BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038112
         (625 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
           OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
          Length = 687

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/679 (54%), Positives = 473/679 (69%), Gaps = 61/679 (8%)

Query: 3   ISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILE 62
           +S K +L LLK+EKNP  A ALFDSATR PGYAHS  ++HHILRRL + ++V HVSRI+E
Sbjct: 8   LSPKHVLKLLKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSETRMVNHVSRIVE 67

Query: 63  LIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGIL------------ 110
           LI  Q+C C EDVALSVI+ YGKNSMPD+ALDVF+RM EIFGCE  I             
Sbjct: 68  LIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEA 127

Query: 111 --------------------------------CRKRQFEKAKRFLNSLWEKGLKPDVYSY 138
                                           C+K++FEKA+ FL+ +W++G KPDV+SY
Sbjct: 128 KQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSY 187

Query: 139 GTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVM 198
            TVIN L K+G L  AL +FDEM ERGV  +V CYNILIDGF K+ D+  A E+W+RL+ 
Sbjct: 188 STVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLE 247

Query: 199 ETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVE 258
           ++SVYPNV T+N+MI+GL KCGR D+CL++W+RMK+NEREKD +TY S IHGLC AGNV+
Sbjct: 248 DSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVD 307

Query: 259 GAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIR 318
            AE V+ E+ E    +D VTYN M+ GFCR GKIKE  ELW +M  K  +N+VSYNILI+
Sbjct: 308 KAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVNIVSYNILIK 367

Query: 319 GLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG--- 375
           GLLENGK+DEA  IW L+  K   AD TT+G+ I+GLC NGY+NKA+ ++ EVE  G   
Sbjct: 368 GLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHL 427

Query: 376 --------------EGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLF 421
                         + RL +A++LV  M KHG +LN++ CN+L+ G I+ S+L  A F  
Sbjct: 428 DVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFL 487

Query: 422 KEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQS 481
           +EM + GC PTVVSYN LI GLCK  +FGEA +FVKEMLE GWKPD+ TYS+L+ GLC+ 
Sbjct: 488 REMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRD 547

Query: 482 KKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTY 541
           +KID+AL+L  QFLQ G   DV M+NILIHGLCS GK++DA+ + +NM+ RNC  NLVTY
Sbjct: 548 RKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTY 607

Query: 542 NTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALC 601
           NTLM+G FK GD ++A  IW ++ +  L+PDIISYN  +KGLC C  +S A EF +DA  
Sbjct: 608 NTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARN 667

Query: 602 RGILPTTITWHILVRAVMN 620
            GI PT  TW+ILVRAV+N
Sbjct: 668 HGIFPTVYTWNILVRAVVN 686


>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
          Length = 754

 Score =  297 bits (761), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 197/666 (29%), Positives = 317/666 (47%), Gaps = 85/666 (12%)

Query: 4   SAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILEL 63
           +A RL NL                 +++P ++  P L+  IL RL        + +ILE 
Sbjct: 65  AALRLFNLA----------------SKKPNFSPEPALYEEILLRLGRSGSFDDMKKILED 108

Query: 64  IEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEA---------------- 107
           ++  +C       L +I++Y +  + D+ L V   M + FG +                 
Sbjct: 109 MKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGN 168

Query: 108 ---------------GI-------------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYG 139
                          GI             LCR  Q   A   L  +   GL PD  ++ 
Sbjct: 169 SLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFT 228

Query: 140 TVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVME 199
           TV+ G ++ GDL GAL + ++M E G   + V  N+++ GF K+G    A    + +  +
Sbjct: 229 TVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQ 288

Query: 200 TSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEG 259
              +P+  T+N ++NGLCK G     +E+ D M +   + D +TY S I GLCK G V+ 
Sbjct: 289 DGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKE 348

Query: 260 AERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIR 318
           A  V  +M+      + VTYN +I   C+  +++E  EL  V+  KG L +V ++N LI+
Sbjct: 349 AVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQ 408

Query: 319 GLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGR 378
           GL        A+ ++E +R K C  D  T+ +LI+ LC  G L++A+ +L +        
Sbjct: 409 GLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQ-------- 460

Query: 379 LADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNT 438
                     M+  GC  +  T N+L++GF +A+K   A  +F EM   G S   V+YNT
Sbjct: 461 ----------MELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNT 510

Query: 439 LINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKG 498
           LI+GLCK  R  +A   + +M+ +G KPD  TY+ L+   C+   I  A  +       G
Sbjct: 511 LIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570

Query: 499 FTPDVTMYNILIHGLCSAGKVEDALQLYSN--MKKRNCVPNLVTYNTLMDGLFKTGDCDK 556
             PD+  Y  LI GLC AG+VE A +L  +  MK  N  P+   YN ++ GLF+     +
Sbjct: 571 CEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPH--AYNPVIQGLFRKRKTTE 628

Query: 557 ALEIWNHILEE-RLRPDIISYNITLKGLCS-CSRMSDAFEFLNDALCRGILPTTITWHIL 614
           A+ ++  +LE+    PD +SY I  +GLC+    + +A +FL + L +G +P   + ++L
Sbjct: 629 AINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYML 688

Query: 615 VRAVMN 620
              ++ 
Sbjct: 689 AEGLLT 694



 Score =  281 bits (718), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 180/634 (28%), Positives = 315/634 (49%), Gaps = 41/634 (6%)

Query: 7   RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEI 66
           +LL+ L+++ +   AL LF+ A+++P ++  P L+  IL RL        + +ILE ++ 
Sbjct: 52  KLLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKS 111

Query: 67  QKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKR------------ 114
            +C       L +I++Y +  + D+ L V   M + FG +       R            
Sbjct: 112 SRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLK 171

Query: 115 --QFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVC 172
             +   AK    S+W  G+KPDV ++  +I  L ++  L  A+ + ++M   G+  +   
Sbjct: 172 LVEISHAKM---SVW--GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKT 226

Query: 173 YNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRM 232
           +  ++ G+ ++GD   A  I E++V     + NV + NV+++G CK GR ++ L     M
Sbjct: 227 FTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNV-SVNVIVHGFCKEGRVEDALNFIQEM 285

Query: 233 KKNERE-KDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGK 291
              +    D +T+ + ++GLCKAG+V+ A  +   M++ G   D  TYN++I G C+ G+
Sbjct: 286 SNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGE 345

Query: 292 IKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGV 350
           +KE  E+ + M  + C  N V+YN LI  L +  +V+EA  +  +L  K    D  T   
Sbjct: 346 VKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNS 405

Query: 351 LINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQ 410
           LI GLC       A+++  E                  M   GC+ + +T N L++    
Sbjct: 406 LIQGLCLTRNHRVAMELFEE------------------MRSKGCEPDEFTYNMLIDSLCS 447

Query: 411 ASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMIT 470
             KL+ A+ + K+M   GC+ +V++YNTLI+G CK  +  EA     EM   G   + +T
Sbjct: 448 KGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVT 507

Query: 471 YSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMK 530
           Y+ LI+GLC+S++++ A +L  Q + +G  PD   YN L+   C  G ++ A  +   M 
Sbjct: 508 YNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMT 567

Query: 531 KRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMS 590
              C P++VTY TL+ GL K G  + A ++   I  + +     +YN  ++GL    + +
Sbjct: 568 SNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTT 627

Query: 591 DAFEFLNDALCRG-ILPTTITWHILVRAVMNNGA 623
           +A     + L +    P  +++ I+ R + N G 
Sbjct: 628 EAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGG 661



 Score =  203 bits (517), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 139/476 (29%), Positives = 225/476 (47%), Gaps = 36/476 (7%)

Query: 79  VIQAYGKNSMPDKALDVFQRMNE---------IFGCEAGILCRKRQFEKAKRFLNSLWEK 129
           ++  + K    + AL+  Q M+           F      LC+    + A   ++ + ++
Sbjct: 265 IVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQE 324

Query: 130 GLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA 189
           G  PDVY+Y +VI+GL K G++  A+ V D+M  R    N V YN LI    K+     A
Sbjct: 325 GYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEA 384

Query: 190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIH 249
            E+  R++    + P+V T+N +I GLC        +E+++ M+    E D FTY   I 
Sbjct: 385 TELA-RVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLID 443

Query: 250 GLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKG-CL 308
            LC  G ++ A  + ++M  SG     +TYN +IDGFC+A K +E  E+++ M   G   
Sbjct: 444 SLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSR 503

Query: 309 NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQIL 368
           N V+YN LI GL ++ +V++A  + + +  +    D  T+  L+   C+ G + KA  I+
Sbjct: 504 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIV 563

Query: 369 NEVEEGG-----------------EGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQA 411
             +   G                  GR+  A+ L+  +   G  L  +  N ++ G  + 
Sbjct: 564 QAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRK 623

Query: 412 SKLENAIFLFKEM-SRKGCSPTVVSYNTLINGLCKVE-RFGEAYSFVKEMLEKGWKPDMI 469
            K   AI LF+EM  +    P  VSY  +  GLC       EA  F+ E+LEKG+ P+  
Sbjct: 624 RKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFS 683

Query: 470 TYSLLINGLCQSKKIDMALKLCCQFLQKG-FT-PDVTMYNILIHGLCSAGKVEDAL 523
           +  +L  GL      +  +KL    +QK  F+  +V+M    + GL    K +DAL
Sbjct: 684 SLYMLAEGLLTLSMEETLVKLVNMVMQKARFSEEEVSM----VKGLLKIRKFQDAL 735


>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
           SV=1
          Length = 730

 Score =  284 bits (726), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 178/645 (27%), Positives = 321/645 (49%), Gaps = 33/645 (5%)

Query: 3   ISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILE 62
           I+  +L  LL+   N  T++ LF     + GY HS  ++  ++ +L        + R+L 
Sbjct: 76  ITPFQLYKLLELPLNVSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLI 135

Query: 63  LIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAG---------ILCRK 113
            ++ +     E + +S+++ Y K   P +   +   M  ++ CE           IL   
Sbjct: 136 QMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSG 195

Query: 114 RQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCY 173
              + A      +  + + P ++++G V+       ++  AL++  +M + G   N V Y
Sbjct: 196 NCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIY 255

Query: 174 NILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMK 233
             LI    K      A ++ E + +   V P+  T+N +I GLCK  R +E  +M +RM 
Sbjct: 256 QTLIHSLSKCNRVNEALQLLEEMFLMGCV-PDAETFNDVILGLCKFDRINEAAKMVNRML 314

Query: 234 KNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIK 293
                 D  TY   ++GLCK G V+ A+ ++  + +  I    V +N +I GF   G++ 
Sbjct: 315 IRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEI----VIFNTLIHGFVTHGRLD 370

Query: 294 ECFE-LWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVL 351
           +    L +++   G + +V +YN LI G  + G V  A+ +   +R K C  +  ++ +L
Sbjct: 371 DAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTIL 430

Query: 352 INGLCKNGYLNKAIQILNEVEEGG-----------------EGRLADAASLVNRMDKHGC 394
           ++G CK G +++A  +LNE+   G                 E R+ +A  +   M + GC
Sbjct: 431 VDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGC 490

Query: 395 KLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYS 454
           K + YT NSL++G  +  ++++A++L ++M  +G     V+YNTLIN   +     EA  
Sbjct: 491 KPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARK 550

Query: 455 FVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLC 514
            V EM+ +G   D ITY+ LI GLC++ ++D A  L  + L+ G  P     NILI+GLC
Sbjct: 551 LVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLC 610

Query: 515 SAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDII 574
            +G VE+A++    M  R   P++VT+N+L++GL + G  +  L ++  +  E + PD +
Sbjct: 611 RSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTV 670

Query: 575 SYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVM 619
           ++N  +  LC    + DA   L++ +  G +P   TW IL+++++
Sbjct: 671 TFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSII 715



 Score =  232 bits (591), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 165/545 (30%), Positives = 268/545 (49%), Gaps = 48/545 (8%)

Query: 37  SPHLFHHILRRLIDPKL------------VVHVSRILELI-EIQKCYC-PEDVAL-SVIQ 81
           + ++F+ +L R I P L            V  +   L L+ ++ K  C P  V   ++I 
Sbjct: 201 AANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIH 260

Query: 82  AYGKNSMPDKALDVFQRMNEIFGCEAGI---------LCRKRQFEKAKRFLNSLWEKGLK 132
           +  K +  ++AL + + M  + GC             LC+  +  +A + +N +  +G  
Sbjct: 261 SLSKCNRVNEALQLLEEMF-LMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFA 319

Query: 133 PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEI 192
           PD  +YG ++NGL K G +  A     ++F R  +  +V +N LI GF   G    AK +
Sbjct: 320 PDDITYGYLMNGLCKIGRVDAA----KDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAV 375

Query: 193 WERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLC 252
              +V    + P+V TYN +I G  K G     LE+   M+    + + ++Y   + G C
Sbjct: 376 LSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFC 435

Query: 253 KAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-LNVV 311
           K G ++ A  V  EM   G+  + V +N +I  FC+  +I E  E++  M RKGC  +V 
Sbjct: 436 KLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVY 495

Query: 312 SYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEV 371
           ++N LI GL E  ++  A+  W LLR      D  + GV+ N +  N  +N  ++     
Sbjct: 496 TFNSLISGLCEVDEIKHAL--W-LLR------DMISEGVVANTVTYNTLINAFLR----- 541

Query: 372 EEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSP 431
                G + +A  LVN M   G  L+  T NSL+ G  +A +++ A  LF++M R G +P
Sbjct: 542 ----RGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAP 597

Query: 432 TVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLC 491
           + +S N LINGLC+     EA  F KEM+ +G  PD++T++ LINGLC++ +I+  L + 
Sbjct: 598 SNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMF 657

Query: 492 CQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKT 551
            +   +G  PD   +N L+  LC  G V DA  L     +   VPN  T++ L+  +   
Sbjct: 658 RKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQ 717

Query: 552 GDCDK 556
              D+
Sbjct: 718 ETLDR 722


>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
           OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
          Length = 598

 Score =  273 bits (699), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 149/505 (29%), Positives = 262/505 (51%), Gaps = 23/505 (4%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
           + R  + E+  +FL ++   G  PD+    T+I G  + G    A  + + +   G   +
Sbjct: 112 MVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPD 171

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
           V+ YN++I G+ K G+   A  + +R+    SV P+VVTYN ++  LC  G+  + +E+ 
Sbjct: 172 VITYNVMISGYCKAGEINNALSVLDRM----SVSPDVVTYNTILRSLCDSGKLKQAMEVL 227

Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
           DRM + +   D  TY   I   C+   V  A ++  EM + G   D VTYN +++G C+ 
Sbjct: 228 DRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKE 287

Query: 290 GKIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348
           G++ E  +    M   GC  NV+++NI++R +   G+  +A  +   +  K  +    T 
Sbjct: 288 GRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTF 347

Query: 349 GVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGF 408
            +LIN LC+ G L +AI IL                   +M +HGC+ N+ + N L++GF
Sbjct: 348 NILINFLCRKGLLGRAIDILE------------------KMPQHGCQPNSLSYNPLLHGF 389

Query: 409 IQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM 468
            +  K++ AI   + M  +GC P +V+YNT++  LCK  +  +A   + ++  KG  P +
Sbjct: 390 CKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVL 449

Query: 469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSN 528
           ITY+ +I+GL ++ K   A+KL  +   K   PD   Y+ L+ GL   GKV++A++ +  
Sbjct: 450 ITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHE 509

Query: 529 MKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSR 588
            ++    PN VT+N++M GL K+   D+A++    ++    +P+  SY I ++GL     
Sbjct: 510 FERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGM 569

Query: 589 MSDAFEFLNDALCRGILPTTITWHI 613
             +A E LN+   +G++  +    +
Sbjct: 570 AKEALELLNELCNKGLMKKSSAEQV 594



 Score =  248 bits (634), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 131/437 (29%), Positives = 238/437 (54%), Gaps = 23/437 (5%)

Query: 180 FFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREK 239
             + G+     +  E +V   +V P+++    +I G C+ G+  +  ++ + ++ +    
Sbjct: 112 MVRTGELEEGFKFLENMVYHGNV-PDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVP 170

Query: 240 DSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELW 299
           D  TY   I G CKAG +  A  V   M    +  D VTYN ++   C +GK+K+  E+ 
Sbjct: 171 DVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVL 227

Query: 300 EVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKN 358
           + M ++ C  +V++Y ILI     +  V  A+ + + +R++ C  D  T+ VL+NG+CK 
Sbjct: 228 DRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKE 287

Query: 359 GYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAI 418
           G L++AI+ LN+                  M   GC+ N  T N ++       +  +A 
Sbjct: 288 GRLDEAIKFLND------------------MPSSGCQPNVITHNIILRSMCSTGRWMDAE 329

Query: 419 FLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGL 478
            L  +M RKG SP+VV++N LIN LC+    G A   +++M + G +P+ ++Y+ L++G 
Sbjct: 330 KLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGF 389

Query: 479 CQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNL 538
           C+ KK+D A++   + + +G  PD+  YN ++  LC  GKVEDA+++ + +  + C P L
Sbjct: 390 CKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVL 449

Query: 539 VTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLND 598
           +TYNT++DGL K G   KA+++ + +  + L+PD I+Y+  + GL    ++ +A +F ++
Sbjct: 450 ITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHE 509

Query: 599 ALCRGILPTTITWHILV 615
               GI P  +T++ ++
Sbjct: 510 FERMGIRPNAVTFNSIM 526



 Score =  226 bits (577), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 117/416 (28%), Positives = 211/416 (50%), Gaps = 20/416 (4%)

Query: 207 VTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYRE 266
           V  N  +  + + G  +E  +  + M  +    D     + I G C+ G    A ++   
Sbjct: 103 VESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEI 162

Query: 267 MVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKV 326
           +  SG   D +TYN MI G+C+AG+I     + + M      +VV+YN ++R L ++GK+
Sbjct: 163 LEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSP--DVVTYNTILRSLCDSGKL 220

Query: 327 DEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLV 386
            +A+ + + + +++C  D  T+ +LI   C++  +  A+++L+E                
Sbjct: 221 KQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDE---------------- 264

Query: 387 NRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKV 446
             M   GC  +  T N L+NG  +  +L+ AI    +M   GC P V+++N ++  +C  
Sbjct: 265 --MRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCST 322

Query: 447 ERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMY 506
            R+ +A   + +ML KG+ P ++T+++LIN LC+   +  A+ +  +  Q G  P+   Y
Sbjct: 323 GRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSY 382

Query: 507 NILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE 566
           N L+HG C   K++ A++    M  R C P++VTYNT++  L K G  + A+EI N +  
Sbjct: 383 NPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSS 442

Query: 567 ERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
           +   P +I+YN  + GL    +   A + L++   + + P TIT+  LV  +   G
Sbjct: 443 KGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREG 498



 Score =  206 bits (524), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 199/378 (52%), Gaps = 22/378 (5%)

Query: 248 IHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC 307
           +  + + G +E   +    MV  G   D +    +I GFCR GK ++  ++ E++   G 
Sbjct: 109 LRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGA 168

Query: 308 L-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQ 366
           + +V++YN++I G  + G+++ A+S+ + +   + + D  T+  ++  LC +G L +A++
Sbjct: 169 VPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAME 225

Query: 367 ILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSR 426
           +L+                  RM +  C  +  T   L+    + S + +A+ L  EM  
Sbjct: 226 VLD------------------RMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRD 267

Query: 427 KGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDM 486
           +GC+P VV+YN L+NG+CK  R  EA  F+ +M   G +P++IT+++++  +C + +   
Sbjct: 268 RGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMD 327

Query: 487 ALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMD 546
           A KL    L+KGF+P V  +NILI+ LC  G +  A+ +   M +  C PN ++YN L+ 
Sbjct: 328 AEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLH 387

Query: 547 GLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILP 606
           G  K    D+A+E    ++     PDI++YN  L  LC   ++ DA E LN    +G  P
Sbjct: 388 GFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSP 447

Query: 607 TTITWHILVRAVMNNGAS 624
             IT++ ++  +   G +
Sbjct: 448 VLITYNTVIDGLAKAGKT 465



 Score =  150 bits (378), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 173/347 (49%), Gaps = 14/347 (4%)

Query: 54  VVHVSRILELIEIQKCYCPEDVALSV-IQAYGKNSMPDKALDVFQRMNEIFGCEAGI--- 109
           V H  ++L+ +  + C  P+ V  +V +    K    D+A+     M    GC+  +   
Sbjct: 255 VGHAMKLLDEMRDRGC-TPDVVTYNVLVNGICKEGRLDEAIKFLNDMPS-SGCQPNVITH 312

Query: 110 ------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFE 163
                 +C   ++  A++ L  +  KG  P V ++  +IN L + G L  A+ + ++M +
Sbjct: 313 NIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQ 372

Query: 164 RGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFD 223
            G + N + YN L+ GF K+    RA E  ER+V     YP++VTYN M+  LCK G+ +
Sbjct: 373 HGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMV-SRGCYPDIVTYNTMLTALCKDGKVE 431

Query: 224 ECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMI 283
           + +E+ +++          TY + I GL KAG    A ++  EM    +  D +TY++++
Sbjct: 432 DAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLV 491

Query: 284 DGFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCN 342
            G  R GK+ E  + +    R G   N V++N ++ GL ++ + D AI     +  + C 
Sbjct: 492 GGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCK 551

Query: 343 ADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRM 389
            + T++ +LI GL   G   +A+++LNE+   G  + + A  +  +M
Sbjct: 552 PNETSYTILIEGLAYEGMAKEALELLNELCNKGLMKKSSAEQVAGKM 598


>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
           OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
          Length = 763

 Score =  273 bits (697), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 178/625 (28%), Positives = 306/625 (48%), Gaps = 32/625 (5%)

Query: 5   AKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRL-IDPKLVVHVSRILEL 63
            K +  ++K +K+P  AL +F+S  +E G+ H+   +  ++ +L    K       ++++
Sbjct: 7   PKHVTAVIKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDM 66

Query: 64  IEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEA---------GILCRKR 114
            E    +  E V +  ++ YG+     +A++VF+RM + + CE           +L    
Sbjct: 67  RENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERM-DFYDCEPTVFSYNAIMSVLVDSG 125

Query: 115 QFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYN 174
            F++A +    + ++G+ PDVYS+   +    K+     AL + + M  +G E NVV Y 
Sbjct: 126 YFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYC 185

Query: 175 ILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKK 234
            ++ GF+++       E++ ++ + + V   + T+N ++  LCK G   EC ++ D++ K
Sbjct: 186 TVVGGFYEENFKAEGYELFGKM-LASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIK 244

Query: 235 NEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKE 294
                + FTY  FI GLC+ G ++GA R+   ++E G   D +TYN +I G C+  K +E
Sbjct: 245 RGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQE 304

Query: 295 CFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLIN 353
                  M  +G   +  +YN LI G  + G V  A  I           D  T+  LI+
Sbjct: 305 AEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLID 364

Query: 354 GLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASK 413
           GLC  G  N+A+ + NE                      G K N    N+L+ G      
Sbjct: 365 GLCHEGETNRALALFNEAL------------------GKGIKPNVILYNTLIKGLSNQGM 406

Query: 414 LENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSL 473
           +  A  L  EMS KG  P V ++N L+NGLCK+    +A   VK M+ KG+ PD+ T+++
Sbjct: 407 ILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNI 466

Query: 474 LINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRN 533
           LI+G     K++ AL++    L  G  PDV  YN L++GLC   K ED ++ Y  M ++ 
Sbjct: 467 LIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKG 526

Query: 534 CVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAF 593
           C PNL T+N L++ L +    D+AL +   +  + + PD +++   + G C    +  A+
Sbjct: 527 CAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAY 586

Query: 594 E-FLNDALCRGILPTTITWHILVRA 617
             F        +  +T T++I++ A
Sbjct: 587 TLFRKMEEAYKVSSSTPTYNIIIHA 611



 Score =  209 bits (532), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 127/441 (28%), Positives = 220/441 (49%), Gaps = 28/441 (6%)

Query: 111 CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNV 170
           C+    + A+R +      G  PD ++Y ++I+GL   G+   ALA+F+E   +G++ NV
Sbjct: 332 CKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNV 391

Query: 171 VCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWD 230
           + YN LI G   +G  + A ++   +  E  + P V T+N+++NGLCK G   +   +  
Sbjct: 392 ILYNTLIKGLSNQGMILEAAQLANEMS-EKGLIPEVQTFNILVNGLCKMGCVSDADGLVK 450

Query: 231 RMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAG 290
            M       D FT+   IHG      +E A  +   M+++G+  D  TYN++++G C+  
Sbjct: 451 VMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTS 510

Query: 291 KIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHG 349
           K ++  E ++ M  KGC  N+ ++NIL+  L    K+DEA+ + E ++ K+ N D+ T G
Sbjct: 511 KFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFG 570

Query: 350 VLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFI 409
            LI+G CKNG L+ A  +  ++EE                  +    +  T N +++ F 
Sbjct: 571 TLIDGFCKNGDLDGAYTLFRKMEEA-----------------YKVSSSTPTYNIIIHAFT 613

Query: 410 QASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMI 469
           +   +  A  LF+EM  +   P   +Y  +++G CK       Y F+ EM+E G+ P + 
Sbjct: 614 EKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLT 673

Query: 470 TYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQ--LYS 527
           T   +IN LC   ++  A  +  + +QKG  P+       ++ +C   K E A    +  
Sbjct: 674 TLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEA------VNTICDVDKKEVAAPKLVLE 727

Query: 528 NMKKRNCVPNLVTYNTLMDGL 548
           ++ K++C+     Y  L DGL
Sbjct: 728 DLLKKSCI-TYYAYELLFDGL 747



 Score =  120 bits (302), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 127/249 (51%)

Query: 374 GGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTV 433
           G +G++ +A ++  RMD + C+   ++ N++M+  + +   + A  ++  M  +G +P V
Sbjct: 87  GRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDV 146

Query: 434 VSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQ 493
            S+   +   CK  R   A   +  M  +G + +++ Y  ++ G  +        +L  +
Sbjct: 147 YSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGK 206

Query: 494 FLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGD 553
            L  G +  ++ +N L+  LC  G V++  +L   + KR  +PNL TYN  + GL + G+
Sbjct: 207 MLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGE 266

Query: 554 CDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHI 613
            D A+ +   ++E+  +PD+I+YN  + GLC  S+  +A  +L   +  G+ P + T++ 
Sbjct: 267 LDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNT 326

Query: 614 LVRAVMNNG 622
           L+      G
Sbjct: 327 LIAGYCKGG 335


>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
           OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
          Length = 747

 Score =  270 bits (689), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 171/583 (29%), Positives = 286/583 (49%), Gaps = 52/583 (8%)

Query: 69  CYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILC----------RKRQFEK 118
           CY    V   V+++Y + S+ DKAL +   + +  G   G+L            KR    
Sbjct: 130 CYSTSSVFDLVVKSYSRLSLIDKALSIVH-LAQAHGFMPGVLSYNAVLDATIRSKRNISF 188

Query: 119 AKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILID 178
           A+     + E  + P+V++Y  +I G   +G++  AL +FD+M  +G   NVV YN LID
Sbjct: 189 AENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLID 248

Query: 179 GFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNERE 238
           G+ K        ++   + ++  + PN+++YNV+INGLC+ GR  E   +   M +    
Sbjct: 249 GYCKLRKIDDGFKLLRSMALK-GLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYS 307

Query: 239 KDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFEL 298
            D  TY + I G CK GN   A  ++ EM+  G+    +TY ++I   C+AG +    E 
Sbjct: 308 LDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEF 367

Query: 299 WEVMGRKG-CLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADS---TTHGVLING 354
            + M  +G C N  +Y  L+ G  + G ++EA   + +LRE N N  S    T+  LING
Sbjct: 368 LDQMRVRGLCPNERTYTTLVDGFSQKGYMNEA---YRVLREMNDNGFSPSVVTYNALING 424

Query: 355 LCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKL 414
            C  G +  AI +L +++E                   G   +  + +++++GF ++  +
Sbjct: 425 HCVTGKMEDAIAVLEDMKE------------------KGLSPDVVSYSTVLSGFCRSYDV 466

Query: 415 ENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLL 474
           + A+ + +EM  KG  P  ++Y++LI G C+  R  EA    +EML  G  PD  TY+ L
Sbjct: 467 DEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTAL 526

Query: 475 INGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNC 534
           IN  C    ++ AL+L  + ++KG  PDV  Y++LI+GL    +  +A +L   +     
Sbjct: 527 INAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEES 586

Query: 535 VPNLVTYNTLMD---------------GLFKTGDCDKALEIWNHILEERLRPDIISYNIT 579
           VP+ VTY+TL++               G    G   +A +++  +L +  +PD  +YNI 
Sbjct: 587 VPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIM 646

Query: 580 LKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
           + G C    +  A+    + +  G L  T+T   LV+A+   G
Sbjct: 647 IHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEG 689



 Score =  235 bits (599), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 158/506 (31%), Positives = 242/506 (47%), Gaps = 55/506 (10%)

Query: 90  DKALDVFQRMNEIFGCEAGIL---------CRKRQFEKAKRFLNSLWEKGLKPDVYSYGT 140
           D AL +F +M E  GC   ++         C+ R+ +   + L S+  KGL+P++ SY  
Sbjct: 222 DVALTLFDKM-ETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNV 280

Query: 141 VINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMET 200
           VINGL + G +     V  EM  RG   + V YN LI G+ K+G++ +A  +    ++  
Sbjct: 281 VINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQAL-VMHAEMLRH 339

Query: 201 SVYPNVVTYNVMINGLCKCGRFDECLEMWDRMK-----KNEREKDSFTYCSFIHGLCKAG 255
            + P+V+TY  +I+ +CK G  +  +E  D+M+      NER     TY + + G  + G
Sbjct: 340 GLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNER-----TYTTLVDGFSQKG 394

Query: 256 NVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKG-CLNVVSYN 314
            +  A RV REM ++G     VTYNA+I+G C  GK+++   + E M  KG   +VVSY+
Sbjct: 395 YMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYS 454

Query: 315 ILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEG 374
            ++ G   +  VDEA+ +   + EK    D+ T+  LI G C+                 
Sbjct: 455 TVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCE----------------- 497

Query: 375 GEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVV 434
            + R  +A  L   M + G   + +T  +L+N +     LE A+ L  EM  KG  P VV
Sbjct: 498 -QRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVV 556

Query: 435 SYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSL---------------LINGLC 479
           +Y+ LINGL K  R  EA   + ++  +   P  +TY                 LI G C
Sbjct: 557 TYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFC 616

Query: 480 QSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLV 539
               +  A ++    L K   PD T YNI+IHG C AG +  A  LY  M K   + + V
Sbjct: 617 MKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTV 676

Query: 540 TYNTLMDGLFKTGDCDKALEIWNHIL 565
           T   L+  L K G  ++   +  H+L
Sbjct: 677 TVIALVKALHKEGKVNELNSVIVHVL 702



 Score =  182 bits (463), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 212/430 (49%), Gaps = 9/430 (2%)

Query: 111 CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNV 170
           C++  F +A      +   GL P V +Y ++I+ + K+G++  A+   D+M  RG+  N 
Sbjct: 321 CKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNE 380

Query: 171 VCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWD 230
             Y  L+DGF +KG YM       R + +    P+VVTYN +ING C  G+ ++ + + +
Sbjct: 381 RTYTTLVDGFSQKG-YMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLE 439

Query: 231 RMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAG 290
            MK+     D  +Y + + G C++ +V+ A RV REMVE GI  D +TY+++I GFC   
Sbjct: 440 DMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQR 499

Query: 291 KIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHG 349
           + KE  +L+E M R G   +  +Y  LI      G +++A+ +   + EK    D  T+ 
Sbjct: 500 RTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYS 559

Query: 350 VLINGLCKNGYLNKAIQILNEV--EEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNG 407
           VLINGL K     +A ++L ++  EE     +       + + ++   +   +  SL+ G
Sbjct: 560 VLINGLNKQSRTREAKRLLLKLFYEESVPSDVT-----YHTLIENCSNIEFKSVVSLIKG 614

Query: 408 FIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPD 467
           F     +  A  +F+ M  K   P   +YN +I+G C+     +AY+  KEM++ G+   
Sbjct: 615 FCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLH 674

Query: 468 MITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYS 527
            +T   L+  L +  K++    +    L+     +     +L+      G ++  L + +
Sbjct: 675 TVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLA 734

Query: 528 NMKKRNCVPN 537
            M K   +PN
Sbjct: 735 EMAKDGFLPN 744



 Score =  110 bits (275), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 109/211 (51%), Gaps = 3/211 (1%)

Query: 415 ENAIFLFKEMSRKG--CSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYS 472
           E A  +FK +      C  T   ++ ++    ++    +A S V      G+ P +++Y+
Sbjct: 114 EYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYN 173

Query: 473 LLINGLCQSKK-IDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKK 531
            +++   +SK+ I  A  +  + L+   +P+V  YNILI G C AG ++ AL L+  M+ 
Sbjct: 174 AVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMET 233

Query: 532 RNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSD 591
           + C+PN+VTYNTL+DG  K    D   ++   +  + L P++ISYN+ + GLC   RM +
Sbjct: 234 KGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKE 293

Query: 592 AFEFLNDALCRGILPTTITWHILVRAVMNNG 622
               L +   RG     +T++ L++     G
Sbjct: 294 VSFVLTEMNRRGYSLDEVTYNTLIKGYCKEG 324


>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
           OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
          Length = 660

 Score =  262 bits (670), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 168/558 (30%), Positives = 280/558 (50%), Gaps = 80/558 (14%)

Query: 57  VSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQF 116
           V ++L  I ++     E   + V +AYGK  +PDKA+D+F RM + F C           
Sbjct: 96  VEKLLSRIRLENRVIIERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRC----------- 144

Query: 117 EKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNIL 176
                          K  V S+ +V+N ++  G           ++ RG+E         
Sbjct: 145 ---------------KRSVKSFNSVLNVIINEG-----------LYHRGLE--------- 169

Query: 177 IDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNE 236
              F+   DY+          M  ++ PN +++N++I  LCK    D  +E++  M + +
Sbjct: 170 ---FY---DYVVNSN------MNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERK 217

Query: 237 REKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECF 296
              D +TYC+ + GLCK   ++ A  +  EM   G     V YN +IDG C+ G +    
Sbjct: 218 CLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVT 277

Query: 297 ELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGL 355
           +L + M  KGC+ N V+YN LI GL   GK+D+A+S+ E +    C  +  T+G LINGL
Sbjct: 278 KLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGL 337

Query: 356 CKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLE 415
            K                  + R  DA  L++ M++ G  LN +  + L++G  +  K E
Sbjct: 338 VK------------------QRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAE 379

Query: 416 NAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLI 475
            A+ L+++M+ KGC P +V Y+ L++GLC+  +  EA   +  M+  G  P+  TYS L+
Sbjct: 380 EAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLM 439

Query: 476 NGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCV 535
            G  ++   + A+++  +  + G + +   Y++LI GLC  G+V++A+ ++S M      
Sbjct: 440 KGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIK 499

Query: 536 PNLVTYNTLMDGLFKTGDCDKALEIWNHIL---EERLRPDIISYNITLKGLCSCSRMSDA 592
           P+ V Y++++ GL   G  D AL++++ +L   E + +PD+++YNI L GLC    +S A
Sbjct: 500 PDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRA 559

Query: 593 FEFLNDALCRGILPTTIT 610
            + LN  L RG  P  IT
Sbjct: 560 VDLLNSMLDRGCDPDVIT 577



 Score =  201 bits (511), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/436 (29%), Positives = 219/436 (50%), Gaps = 26/436 (5%)

Query: 188 RAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNER----EKDSFT 243
           +A +++ R+V E     +V ++N ++N +   G +   LE +D +  +        +  +
Sbjct: 130 KAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLS 189

Query: 244 YCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMG 303
           +   I  LCK   V+ A  V+R M E     D  TY  ++DG C+  +I E   L + M 
Sbjct: 190 FNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQ 249

Query: 304 RKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLN 362
            +GC  + V YN+LI GL + G +     + + +  K C  +  T+  LI+GLC  G L+
Sbjct: 250 SEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLD 309

Query: 363 KAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFK 422
           KA+                  SL+ RM    C  N  T  +L+NG ++  +  +A+ L  
Sbjct: 310 KAV------------------SLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLS 351

Query: 423 EMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSK 482
            M  +G       Y+ LI+GL K  +  EA S  ++M EKG KP+++ YS+L++GLC+  
Sbjct: 352 SMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREG 411

Query: 483 KIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYN 542
           K + A ++  + +  G  P+   Y+ L+ G    G  E+A+Q++  M K  C  N   Y+
Sbjct: 412 KPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYS 471

Query: 543 TLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCR 602
            L+DGL   G   +A+ +W+ +L   ++PD ++Y+  +KGLC    M  A +  ++ LC+
Sbjct: 472 VLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQ 531

Query: 603 ---GILPTTITWHILV 615
                 P  +T++IL+
Sbjct: 532 EEPKSQPDVVTYNILL 547



 Score =  196 bits (497), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 123/454 (27%), Positives = 227/454 (50%), Gaps = 25/454 (5%)

Query: 176 LIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKN 235
           +I+ +   GD+   +++  R+ +E  V     ++ V+     K    D+ ++++ RM   
Sbjct: 83  MIESYANSGDFDSVEKLLSRIRLENRVIIER-SFIVVFRAYGKAHLPDKAVDLFHRMVDE 141

Query: 236 EREKDSF-TYCSFIHGLCKAGNVEGAERVYREMVESG----IFVDAVTYNAMIDGFCRAG 290
            R K S  ++ S ++ +   G        Y  +V S     I  + +++N +I   C+  
Sbjct: 142 FRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLR 201

Query: 291 KIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHG 349
            +    E++  M  + CL +  +Y  L+ GL +  ++DEA+ + + ++ + C+     + 
Sbjct: 202 FVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYN 261

Query: 350 VLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFI 409
           VLI+GLCK G L +  +                  LV+ M   GC  N  T N+L++G  
Sbjct: 262 VLIDGLCKKGDLTRVTK------------------LVDNMFLKGCVPNEVTYNTLIHGLC 303

Query: 410 QASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMI 469
              KL+ A+ L + M    C P  V+Y TLINGL K  R  +A   +  M E+G+  +  
Sbjct: 304 LKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQH 363

Query: 470 TYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNM 529
            YS+LI+GL +  K + A+ L  +  +KG  P++ +Y++L+ GLC  GK  +A ++ + M
Sbjct: 364 IYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRM 423

Query: 530 KKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRM 589
               C+PN  TY++LM G FKTG C++A+++W  + +     +   Y++ + GLC   R+
Sbjct: 424 IASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRV 483

Query: 590 SDAFEFLNDALCRGILPTTITWHILVRAVMNNGA 623
            +A    +  L  GI P T+ +  +++ +   G+
Sbjct: 484 KEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGS 517



 Score =  153 bits (386), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 198/397 (49%), Gaps = 17/397 (4%)

Query: 8   LLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQ 67
           L++ L  E+    A+ L D    E G + SP +++ ++  L     +  V+++++ + ++
Sbjct: 228 LMDGLCKEERIDEAVLLLDEMQSE-GCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLK 286

Query: 68  KCYCPEDVALSVIQAYGKNSMPDKALDVFQRM-------NEI-FGCEAGILCRKRQFEKA 119
            C   E    ++I         DKA+ + +RM       N++ +G     L ++R+   A
Sbjct: 287 GCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDA 346

Query: 120 KRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDG 179
            R L+S+ E+G   + + Y  +I+GL K G    A++++ +M E+G + N+V Y++L+DG
Sbjct: 347 VRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDG 406

Query: 180 FFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREK 239
             ++G    AKEI  R++  +   PN  TY+ ++ G  K G  +E +++W  M K    +
Sbjct: 407 LCREGKPNEAKEILNRMI-ASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSR 465

Query: 240 DSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELW 299
           + F Y   I GLC  G V+ A  V+ +M+  GI  D V Y+++I G C  G +    +L+
Sbjct: 466 NKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLY 525

Query: 300 EVM----GRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGL 355
             M      K   +VV+YNIL+ GL     +  A+ +   + ++ C+ D  T    +N L
Sbjct: 526 HEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTL 585

Query: 356 C-KNGYLNKAIQILNE--VEEGGEGRLADAASLVNRM 389
             K+   +K    L E  V      R++ A ++V  M
Sbjct: 586 SEKSNSCDKGRSFLEELVVRLLKRQRVSGACTIVEVM 622



 Score = 89.7 bits (221), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 111/227 (48%), Gaps = 5/227 (2%)

Query: 404 LMNGFIQASKLENAIFLFKEMSRK-GCSPTVVSYNTLINGLCKVERFGEAYSF----VKE 458
           +   + +A   + A+ LF  M  +  C  +V S+N+++N +     +     F    V  
Sbjct: 118 VFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNS 177

Query: 459 MLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGK 518
            +     P+ ++++L+I  LC+ + +D A+++     ++   PD   Y  L+ GLC   +
Sbjct: 178 NMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEER 237

Query: 519 VEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNI 578
           +++A+ L   M+   C P+ V YN L+DGL K GD  +  ++ +++  +   P+ ++YN 
Sbjct: 238 IDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNT 297

Query: 579 TLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNGAST 625
            + GLC   ++  A   L   +    +P  +T+  L+  ++    +T
Sbjct: 298 LIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAT 344


>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
           OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
          Length = 659

 Score =  259 bits (662), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 168/618 (27%), Positives = 297/618 (48%), Gaps = 39/618 (6%)

Query: 12  LKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYC 71
           L+ E     AL  F S      + H+P  F  ++R+L     V  V  +L+ +++Q  +C
Sbjct: 50  LRQESCVPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHC 109

Query: 72  PEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI---------LCRKRQFEKAKRF 122
            ED+ +SVI  Y +  + ++A+++F R+ E FGC+  +         L  + + +     
Sbjct: 110 SEDLFISVISVYRQVGLAERAVEMFYRIKE-FGCDPSVKIYNHVLDTLLGENRIQMIYMV 168

Query: 123 LNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFK 182
              +   G +P+V++Y  ++  L K+  + GA  +  EM  +G   + V Y  +I    +
Sbjct: 169 YRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCE 228

Query: 183 KGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSF 242
            G     +E+ ER        P V  YN +INGLCK   +    E+   M +     +  
Sbjct: 229 VGLVKEGRELAERF------EPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVI 282

Query: 243 TYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVM 302
           +Y + I+ LC +G +E A     +M++ G   +  T ++++ G    G   +  +LW  M
Sbjct: 283 SYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQM 342

Query: 303 GRKGCL--NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGY 360
            R   L  NVV+YN L++G   +G + +A+S++  + E  C+ +  T+G LING  K G 
Sbjct: 343 IRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGS 402

Query: 361 LNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFL 420
           L+ A+ I N                  +M   GC  N     +++    + SK + A  L
Sbjct: 403 LDGAVYIWN------------------KMLTSGCCPNVVVYTNMVEALCRHSKFKEAESL 444

Query: 421 FKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGW-KPDMITYSLLINGLC 479
            + MS++ C+P+V ++N  I GLC   R   A    ++M ++    P+++TY+ L++GL 
Sbjct: 445 IEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLA 504

Query: 480 QSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLV 539
           ++ +I+ A  L  +   +G     + YN L+HG C+AG    ALQL   M      P+ +
Sbjct: 505 KANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEI 564

Query: 540 TYNTLMDGLFKTGDCDKALEIWNHIL--EERLRPDIISYNITLKGLCSCSRMSDAFEFLN 597
           T N ++    K G  ++A ++ + +     + RPD+ISY   + GLC  +   D    L 
Sbjct: 565 TMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLE 624

Query: 598 DALCRGILPTTITWHILV 615
             +  GI+P+  TW +L+
Sbjct: 625 RMISAGIVPSIATWSVLI 642



 Score =  189 bits (480), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 154/587 (26%), Positives = 259/587 (44%), Gaps = 42/587 (7%)

Query: 63  LIEIQKCYCP----EDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEK 118
           L+++QK   P     ++ ++ +     N    K LDV +R+ +           +     
Sbjct: 10  LLKVQKPLIPFVLNTNLNVNHLLTESPNHAEIKELDVVKRLRQ-----------ESCVPL 58

Query: 119 AKRFLNSLWEKGL-KPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILI 177
           A  F  S+    L K    ++  +I  L   G +     +  +M  +G   +   +  +I
Sbjct: 59  ALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVI 118

Query: 178 DGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNER 237
             + + G   RA E++ R + E    P+V  YN +++ L    R      ++  MK++  
Sbjct: 119 SVYRQVGLAERAVEMFYR-IKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGF 177

Query: 238 EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFE 297
           E + FTY   +  LCK   V+GA+++  EM   G   DAV+Y  +I   C  G +KE  E
Sbjct: 178 EPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRE 237

Query: 298 LWEVMGRKGCLNVVS-YNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLC 356
           L E         VVS YN LI GL +      A  +   + EK  + +  ++  LIN LC
Sbjct: 238 LAERFEP-----VVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLC 292

Query: 357 KNGYLNKAIQILNEVEEGG-----------------EGRLADAASLVNRMDK-HGCKLNA 398
            +G +  A   L ++ + G                  G   DA  L N+M +  G + N 
Sbjct: 293 NSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNV 352

Query: 399 YTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKE 458
              N+L+ GF     +  A+ +F  M   GCSP + +Y +LING  K      A     +
Sbjct: 353 VAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNK 412

Query: 459 MLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGK 518
           ML  G  P+++ Y+ ++  LC+  K   A  L     ++   P V  +N  I GLC AG+
Sbjct: 413 MLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGR 472

Query: 519 VEDALQLYSNMKKRN-CVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYN 577
           ++ A +++  M++++ C PN+VTYN L+DGL K    ++A  +   I    +     +YN
Sbjct: 473 LDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYN 532

Query: 578 ITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNGAS 624
             L G C+      A + +   +  G  P  IT ++++ A    G +
Sbjct: 533 TLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKA 579



 Score =  187 bits (475), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/450 (26%), Positives = 224/450 (49%), Gaps = 28/450 (6%)

Query: 71  CPEDVALS-VIQAYGKNSMPDKALDVFQRMNEIFGCEAGI---LCRKRQFEKAKRFLNSL 126
           CP+ V+ + VI +  +  +  +  ++ +R   +      +   LC++  ++ A   +  +
Sbjct: 213 CPDAVSYTTVISSMCEVGLVKEGRELAERFEPVVSVYNALINGLCKEHDYKGAFELMREM 272

Query: 127 WEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDY 186
            EKG+ P+V SY T+IN L  SG +  A +   +M +RG   N+   + L+ G F +G  
Sbjct: 273 VEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTT 332

Query: 187 MRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCS 246
             A ++W +++    + PNVV YN ++ G C  G   + + ++  M++     +  TY S
Sbjct: 333 FDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGS 392

Query: 247 FIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKG 306
            I+G  K G+++GA  ++ +M+ SG   + V Y  M++  CR  K KE   L E+M ++ 
Sbjct: 393 LINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKEN 452

Query: 307 CL-NVVSYNILIRGLLENGKVDEAISIWELLREKN-CNADSTTHGVLINGLCKNGYLNKA 364
           C  +V ++N  I+GL + G++D A  ++  + +++ C  +  T+  L++GL K       
Sbjct: 453 CAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAK------- 505

Query: 365 IQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEM 424
                        R+ +A  L   +   G + ++ T N+L++G   A     A+ L  +M
Sbjct: 506 -----------ANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKM 554

Query: 425 SRKGCSPTVVSYNTLINGLC---KVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQS 481
              G SP  ++ N +I   C   K ER  +    V     K W+PD+I+Y+ +I GLC+S
Sbjct: 555 MVDGKSPDEITMNMIILAYCKQGKAERAAQMLDLVSCGRRK-WRPDVISYTNVIWGLCRS 613

Query: 482 KKIDMALKLCCQFLQKGFTPDVTMYNILIH 511
              +  + L  + +  G  P +  +++LI+
Sbjct: 614 NCREDGVILLERMISAGIVPSIATWSVLIN 643



 Score = 67.0 bits (162), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 47/255 (18%)

Query: 78  SVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI---------LCRKRQFEKAKRFLNSLWE 128
           S+I  + K    D A+ ++ +M    GC   +         LCR  +F++A+  +  + +
Sbjct: 392 SLINGFAKRGSLDGAVYIWNKM-LTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSK 450

Query: 129 KGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERG-VETNVVCYNILIDGFFKKGD-- 185
           +   P V ++   I GL  +G L  A  VF +M ++     N+V YN L+DG  K     
Sbjct: 451 ENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIE 510

Query: 186 --YMRAKEIWERLV-METSVY-----------------------------PNVVTYNVMI 213
             Y   +EI+ R V   +S Y                             P+ +T N++I
Sbjct: 511 EAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMII 570

Query: 214 NGLCKCGRFDECLEMWDRMKKNERE--KDSFTYCSFIHGLCKAGNVEGAERVYREMVESG 271
              CK G+ +   +M D +    R+   D  +Y + I GLC++   E    +   M+ +G
Sbjct: 571 LAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAG 630

Query: 272 IFVDAVTYNAMIDGF 286
           I     T++ +I+ F
Sbjct: 631 IVPSIATWSVLINCF 645


>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
           SV=2
          Length = 629

 Score =  259 bits (661), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 154/495 (31%), Positives = 253/495 (51%), Gaps = 30/495 (6%)

Query: 134 DVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIW 193
           D+YSY  +IN   +   L  ALAV  +M + G E ++V  + L++G      Y   K I 
Sbjct: 114 DLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNG------YCHGKRIS 167

Query: 194 ERLVMETSVY-----PNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFI 248
           E + +   ++     PN VT+N +I+GL    +  E + + DRM     + D FTY + +
Sbjct: 168 EAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVV 227

Query: 249 HGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL 308
           +GLCK G+++ A  + ++M +  I  D V Y  +ID  C    + +   L+  M  KG  
Sbjct: 228 NGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIR 287

Query: 309 -NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQI 367
            NVV+YN LIR L   G+  +A  +   + E+  N +  T   LI+   K          
Sbjct: 288 PNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK---------- 337

Query: 368 LNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRK 427
                   EG+L +A  L + M K     + +T +SL+NGF    +L+ A  +F+ M  K
Sbjct: 338 --------EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 389

Query: 428 GCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMA 487
            C P VV+YNTLI G CK +R  E     +EM ++G   + +TY+ LI GL Q+   DMA
Sbjct: 390 DCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMA 449

Query: 488 LKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDG 547
            K+  + +  G  PD+  Y+IL+ GLC  GK+E AL ++  ++K    P++ TYN +++G
Sbjct: 450 QKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEG 509

Query: 548 LFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPT 607
           + K G  +   +++  +  + ++P++I Y   + G C      +A     +    G LP 
Sbjct: 510 MCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPN 569

Query: 608 TITWHILVRAVMNNG 622
           + T++ L+RA + +G
Sbjct: 570 SGTYNTLIRARLRDG 584



 Score =  234 bits (596), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 162/589 (27%), Positives = 284/589 (48%), Gaps = 34/589 (5%)

Query: 1   MVISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRR--LIDPKLVVHVS 58
           +V S  + ++L K       A  LF  + R   ++ + + +   L R  L+D KL   V 
Sbjct: 9   IVASQSKKMSLAKRFAQLRKASPLF--SLRGVYFSAASYDYREKLSRNVLLDLKLDDAVD 66

Query: 59  RILELIEIQKCYCPEDVALS-VIQAYGKNSMPDKALDVFQRMNEI--------FGCEAGI 109
              E+++ +    P  V  + ++ A  K +  D  + + +RM  +        +      
Sbjct: 67  LFGEMVQSRPL--PSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINC 124

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
            CR+ Q   A   L  + + G +PD+ +  +++NG      +  A+A+ D+MF    + N
Sbjct: 125 FCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPN 184

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
            V +N LI G F       A  + +R+V      P++ TY  ++NGLCK G  D  L + 
Sbjct: 185 TVTFNTLIHGLFLHNKASEAVALIDRMVAR-GCQPDLFTYGTVVNGLCKRGDIDLALSLL 243

Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
            +M+K + E D   Y + I  LC   NV  A  ++ EM   GI  + VTYN++I   C  
Sbjct: 244 KKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNY 303

Query: 290 GKIKECFELW-EVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348
           G+  +   L  +++ RK   NVV+++ LI   ++ GK+ EA  +++ + +++ + D  T+
Sbjct: 304 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 363

Query: 349 GVLINGLCKNGYLNKAIQIL---------------NEVEEG--GEGRLADAASLVNRMDK 391
             LING C +  L++A  +                N + +G     R+ +   L   M +
Sbjct: 364 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQ 423

Query: 392 HGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGE 451
            G   N  T N+L+ G  QA   + A  +FK+M   G  P +++Y+ L++GLCK  +  +
Sbjct: 424 RGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEK 483

Query: 452 AYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIH 511
           A    + + +   +PD+ TY+++I G+C++ K++    L C    KG  P+V +Y  +I 
Sbjct: 484 ALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMIS 543

Query: 512 GLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEI 560
           G C  G  E+A  L+  MK+   +PN  TYNTL+    + GD   + E+
Sbjct: 544 GFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAEL 592



 Score =  202 bits (513), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 126/421 (29%), Positives = 214/421 (50%), Gaps = 21/421 (4%)

Query: 103 FGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMF 162
           +G     LC++   + A   L  + +  ++ DV  Y T+I+ L    ++  AL +F EM 
Sbjct: 223 YGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMD 282

Query: 163 ERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRF 222
            +G+  NVV YN LI      G +  A  +   ++ E  + PNVVT++ +I+   K G+ 
Sbjct: 283 NKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI-ERKINPNVVTFSALIDAFVKEGKL 341

Query: 223 DECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAM 282
            E  +++D M K   + D FTY S I+G C    ++ A+ ++  M+    F + VTYN +
Sbjct: 342 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401

Query: 283 IDGFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNC 341
           I GFC+A +++E  EL+  M ++G + N V+YN LI+GL + G  D A  I++ +     
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461

Query: 342 NADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTC 401
             D  T+ +L++GLCK G L KA+ +   ++                  K   + + YT 
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQ------------------KSKMEPDIYTY 503

Query: 402 NSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLE 461
           N ++ G  +A K+E+   LF  +S KG  P V+ Y T+I+G C+     EA +  +EM E
Sbjct: 504 NIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKE 563

Query: 462 KGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVED 521
            G  P+  TY+ LI    +      + +L  +    GF  D +  +++I+ L   G++E 
Sbjct: 564 DGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINML-HDGRLEK 622

Query: 522 A 522
           +
Sbjct: 623 S 623



 Score =  194 bits (492), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 216/435 (49%), Gaps = 24/435 (5%)

Query: 118 KAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILI 177
           +A   ++ +  +G +PD+++YGTV+NGL K GD+  AL++  +M +  +E +VV Y  +I
Sbjct: 203 EAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTII 262

Query: 178 DGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNER 237
           D      +   A  ++  +     + PNVVTYN +I  LC  GR+ +   +   M + + 
Sbjct: 263 DALCNYKNVNDALNLFTEMD-NKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI 321

Query: 238 EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFE 297
             +  T+ + I    K G +  AE++Y EM++  I  D  TY+++I+GFC   ++ E   
Sbjct: 322 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 381

Query: 298 LWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLC 356
           ++E+M  K C  NVV+YN LI+G  +  +V+E + ++  + ++    ++ T+  LI GL 
Sbjct: 382 MFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLF 441

Query: 357 KNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLEN 416
           + G  + A +I                    +M   G   +  T + L++G  +  KLE 
Sbjct: 442 QAGDCDMAQKIFK------------------KMVSDGVPPDIITYSILLDGLCKYGKLEK 483

Query: 417 AIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLIN 476
           A+ +F+ + +    P + +YN +I G+CK  +  + +     +  KG KP++I Y+ +I+
Sbjct: 484 ALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMIS 543

Query: 477 GLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVP 536
           G C+    + A  L  +  + G  P+   YN LI      G    + +L   M+    V 
Sbjct: 544 GFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVG 603

Query: 537 NLVT----YNTLMDG 547
           +  T     N L DG
Sbjct: 604 DASTISMVINMLHDG 618



 Score =  137 bits (344), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 132/239 (55%)

Query: 384 SLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGL 443
           SL  RM       + Y+ N L+N F + S+L  A+ +  +M + G  P +V+ ++L+NG 
Sbjct: 101 SLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGY 160

Query: 444 CKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDV 503
           C  +R  EA + V +M    ++P+ +T++ LI+GL    K   A+ L  + + +G  PD+
Sbjct: 161 CHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDL 220

Query: 504 TMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNH 563
             Y  +++GLC  G ++ AL L   M+K     ++V Y T++D L    + + AL ++  
Sbjct: 221 FTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTE 280

Query: 564 ILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
           +  + +RP++++YN  ++ LC+  R SDA   L+D + R I P  +T+  L+ A +  G
Sbjct: 281 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEG 339



 Score =  136 bits (343), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 126/245 (51%)

Query: 378 RLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYN 437
           +L DA  L   M +     +    N L++   + +K +  I L + M     S  + SYN
Sbjct: 60  KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 119

Query: 438 TLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQK 497
            LIN  C+  +   A + + +M++ G++PD++T S L+NG C  K+I  A+ L  Q    
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 179

Query: 498 GFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKA 557
            + P+   +N LIHGL    K  +A+ L   M  R C P+L TY T+++GL K GD D A
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 239

Query: 558 LEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRA 617
           L +   + + ++  D++ Y   +  LC+   ++DA     +   +GI P  +T++ L+R 
Sbjct: 240 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 299

Query: 618 VMNNG 622
           + N G
Sbjct: 300 LCNYG 304



 Score =  124 bits (312), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 160/328 (48%), Gaps = 16/328 (4%)

Query: 5   AKRLL-NLLKAEKNPH--TALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRIL 61
           A RLL ++++ + NP+  T  AL D+  +E     +  L+  +++R IDP +  + S I 
Sbjct: 309 ASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLI- 367

Query: 62  ELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKR 121
                   +C  D        +      D   +V      I G      C+ ++ E+   
Sbjct: 368 ------NGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKG-----FCKAKRVEEGME 416

Query: 122 FLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFF 181
               + ++GL  +  +Y T+I GL ++GD   A  +F +M   GV  +++ Y+IL+DG  
Sbjct: 417 LFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLC 476

Query: 182 KKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDS 241
           K G   +A  ++E L  ++ + P++ TYN+MI G+CK G+ ++  +++  +     + + 
Sbjct: 477 KYGKLEKALVVFEYL-QKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNV 535

Query: 242 FTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEV 301
             Y + I G C+ G  E A+ ++REM E G   ++ TYN +I    R G      EL + 
Sbjct: 536 IIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKE 595

Query: 302 MGRKGCLNVVSYNILIRGLLENGKVDEA 329
           M   G +   S   ++  +L +G+++++
Sbjct: 596 MRSCGFVGDASTISMVINMLHDGRLEKS 623


>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
           PE=2 SV=1
          Length = 791

 Score =  258 bits (659), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 164/545 (30%), Positives = 273/545 (50%), Gaps = 34/545 (6%)

Query: 92  ALD-VFQRMNEIFGCEAGI---------LCRKRQFEKAKRFLNSLWEK---GLKPDVYSY 138
           A+D V +RM E+ GC   +         LC + + ++A   L+ + +    G  PDV SY
Sbjct: 141 AMDIVLRRMTEL-GCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 199

Query: 139 GTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVM 198
            TVING  K GD   A + + EM +RG+  +VV YN +I    K     +A E+   +V 
Sbjct: 200 TTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMV- 258

Query: 199 ETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVE 258
           +  V P+ +TYN +++G C  G+  E +    +M+ +  E D  TY   +  LCK G   
Sbjct: 259 KNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCM 318

Query: 259 GAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-LNVVSYNILI 317
            A +++  M + G+  +  TY  ++ G+   G + E   L ++M R G   +   ++ILI
Sbjct: 319 EARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILI 378

Query: 318 RGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEG 377
               + GKVD+A+ ++  +R++  N ++ T+G +I  LCK+G                  
Sbjct: 379 CAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSG------------------ 420

Query: 378 RLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYN 437
           R+ DA     +M   G        NSL++G    +K E A  L  EM  +G     + +N
Sbjct: 421 RVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFN 480

Query: 438 TLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQK 497
           ++I+  CK  R  E+    + M+  G KP++ITY+ LING C + K+D A+KL    +  
Sbjct: 481 SIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSV 540

Query: 498 GFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKA 557
           G  P+   Y+ LI+G C   ++EDAL L+  M+     P+++TYN ++ GLF+T     A
Sbjct: 541 GLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAA 600

Query: 558 LEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRA 617
            E++  I E   + ++ +YNI L GLC      DA +   +     +     T++I++ A
Sbjct: 601 KELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDA 660

Query: 618 VMNNG 622
           ++  G
Sbjct: 661 LLKVG 665



 Score =  248 bits (632), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 139/512 (27%), Positives = 261/512 (50%), Gaps = 21/512 (4%)

Query: 131 LKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAK 190
           + PD+ +YG +I    ++G L    A    + ++G   + + +  L+ G         A 
Sbjct: 83  VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 142

Query: 191 EIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNE---REKDSFTYCSF 247
           +I  R + E    PNV +YN+++ GLC   R  E LE+   M  +       D  +Y + 
Sbjct: 143 DIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTV 202

Query: 248 IHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC 307
           I+G  K G+ + A   Y EM++ GI  D VTYN++I   C+A  + +  E+   M + G 
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGV 262

Query: 308 L-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQ 366
           + + ++YN ++ G   +G+  EAI   + +R      D  T+ +L++ LCKNG   +A +
Sbjct: 263 MPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARK 322

Query: 367 ILNEVEEGG-----------------EGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFI 409
           I + + + G                 +G L +   L++ M ++G   + Y  + L+  + 
Sbjct: 323 IFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYA 382

Query: 410 QASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMI 469
           +  K++ A+ +F +M ++G +P  V+Y  +I  LCK  R  +A  + ++M+++G  P  I
Sbjct: 383 KQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNI 442

Query: 470 TYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNM 529
            Y+ LI+GLC   K + A +L  + L +G   +   +N +I   C  G+V ++ +L+  M
Sbjct: 443 VYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELM 502

Query: 530 KKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRM 589
            +    PN++TYNTL++G    G  D+A+++ + ++   L+P+ ++Y+  + G C  SRM
Sbjct: 503 VRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRM 562

Query: 590 SDAFEFLNDALCRGILPTTITWHILVRAVMNN 621
            DA     +    G+ P  IT++I+++ +   
Sbjct: 563 EDALVLFKEMESSGVSPDIITYNIILQGLFQT 594



 Score =  204 bits (519), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 144/581 (24%), Positives = 271/581 (46%), Gaps = 46/581 (7%)

Query: 41  FHHILRRLIDPKLVVHVSRILELIEIQKC--------------YCPEDVAL-SVIQAYGK 85
           +H +L R I P +V + S I  L + Q                  P+ +   S++  Y  
Sbjct: 219 YHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCS 278

Query: 86  NSMPDKALDVFQRMNEIFGCEAGI---------LCRKRQFEKAKRFLNSLWEKGLKPDVY 136
           +  P +A+   ++M    G E  +         LC+  +  +A++  +S+ ++GLKP++ 
Sbjct: 279 SGQPKEAIGFLKKMRSD-GVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEIT 337

Query: 137 SYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERL 196
           +YGT++ G    G L+    + D M   G+  +   ++ILI  + K+G   +A  ++ ++
Sbjct: 338 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKM 397

Query: 197 VMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGN 256
             +  + PN VTY  +I  LCK GR ++ +  +++M        +  Y S IHGLC    
Sbjct: 398 -RQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNK 456

Query: 257 VEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-LNVVSYNI 315
            E AE +  EM++ GI ++ + +N++ID  C+ G++ E  +L+E+M R G   NV++YN 
Sbjct: 457 WERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNT 516

Query: 316 LIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG 375
           LI G    GK+DEA+ +   +       ++ T+  LING CK                  
Sbjct: 517 LINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKIS---------------- 560

Query: 376 EGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVS 435
             R+ DA  L   M+  G   +  T N ++ G  Q  +   A  L+  ++  G    + +
Sbjct: 561 --RMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELST 618

Query: 436 YNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFL 495
           YN +++GLCK +   +A    + +     K +  T++++I+ L +  + D A  L   F 
Sbjct: 619 YNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFS 678

Query: 496 QKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCD 555
             G  P+   Y ++   +   G +E+  QL+ +M+   C  +    N ++  L + G+  
Sbjct: 679 SNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEIT 738

Query: 556 KALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFL 596
           +A    + I E+    +  + ++ +  L S  +  + + FL
Sbjct: 739 RAGTYLSMIDEKHFSLEASTASLFID-LLSGGKYQEYYRFL 778



 Score =  195 bits (495), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 132/470 (28%), Positives = 222/470 (47%), Gaps = 28/470 (5%)

Query: 154 ALAVFDEMFERGVETNVVCYN-ILIDGFFKKGDYMRAKEIWERLVMETS--VYPNVVTYN 210
           A  VFDE+  RG   ++   N  L D    +     A   + R+    +  V P++ TY 
Sbjct: 34  ARHVFDELLRRGRGASIYGLNRALAD--VARDSPAAAVSRYNRMARAGADEVTPDLCTYG 91

Query: 211 VMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGA-ERVYREMVE 269
           ++I   C+ GR D        + K     D+  +   + GLC       A + V R M E
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 270 SGIFVDAVTYNAMIDGFCRAGKIKECFELWEVM----GRKGCLNVVSYNILIRGLLENGK 325
            G   +  +YN ++ G C   + +E  EL  +M    G     +VVSY  +I G  + G 
Sbjct: 152 LGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGD 211

Query: 326 VDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASL 385
            D+A S +  + ++    D  T+  +I  LCK   ++KA+++LN                
Sbjct: 212 SDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNT--------------- 256

Query: 386 VNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCK 445
              M K+G   +  T NS+++G+  + + + AI   K+M   G  P VV+Y+ L++ LCK
Sbjct: 257 ---MVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCK 313

Query: 446 VERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTM 505
             R  EA      M ++G KP++ TY  L+ G      +     L    ++ G  PD  +
Sbjct: 314 NGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYV 373

Query: 506 YNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHIL 565
           ++ILI      GKV+ A+ ++S M+++   PN VTY  ++  L K+G  + A+  +  ++
Sbjct: 374 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 433

Query: 566 EERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILV 615
           +E L P  I YN  + GLC+C++   A E + + L RGI   TI ++ ++
Sbjct: 434 DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSII 483



 Score =  129 bits (324), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 143/317 (45%), Gaps = 27/317 (8%)

Query: 316 LIRGLLENGKVDEAISIWELLREKNCNADSTT-----HGVLINGLCKNGYLNKAIQILNE 370
           L R L +  +   A ++    R     AD  T     +G+LI   C+ G L+     L  
Sbjct: 53  LNRALADVARDSPAAAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGN 112

Query: 371 VEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAI-FLFKEMSRKGC 429
           V                   K G +++A     L+ G     +  +A+  + + M+  GC
Sbjct: 113 VI------------------KKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGC 154

Query: 430 SPTVVSYNTLINGLCKVERFGEAYSFVKEMLEK---GWKPDMITYSLLINGLCQSKKIDM 486
            P V SYN L+ GLC   R  EA   +  M +    G  PD+++Y+ +ING  +    D 
Sbjct: 155 IPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDK 214

Query: 487 ALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMD 546
           A     + L +G  PDV  YN +I  LC A  ++ A+++ + M K   +P+ +TYN+++ 
Sbjct: 215 AYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILH 274

Query: 547 GLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILP 606
           G   +G   +A+     +  + + PD+++Y++ +  LC   R  +A +  +    RG+ P
Sbjct: 275 GYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKP 334

Query: 607 TTITWHILVRAVMNNGA 623
              T+  L++     GA
Sbjct: 335 EITTYGTLLQGYATKGA 351



 Score =  124 bits (312), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 131/249 (52%), Gaps = 8/249 (3%)

Query: 381 DAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGC---SPTVVSYN 437
           DA  + + + + G   + Y  N  +    + S    A+  +  M+R G    +P + +Y 
Sbjct: 33  DARHVFDELLRRGRGASIYGLNRALADVARDSP-AAAVSRYNRMARAGADEVTPDLCTYG 91

Query: 438 TLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQK 497
            LI   C+  R    ++ +  +++KG++ D I ++ L+ GLC  K+   A+ +  + + +
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 498 -GFTPDVTMYNILIHGLCSAGKVEDALQLYSNM---KKRNCVPNLVTYNTLMDGLFKTGD 553
            G  P+V  YNIL+ GLC   + ++AL+L   M   +     P++V+Y T+++G FK GD
Sbjct: 152 LGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGD 211

Query: 554 CDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHI 613
            DKA   ++ +L+  + PD+++YN  +  LC    M  A E LN  +  G++P  +T++ 
Sbjct: 212 SDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNS 271

Query: 614 LVRAVMNNG 622
           ++    ++G
Sbjct: 272 ILHGYCSSG 280


>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
           OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
          Length = 632

 Score =  257 bits (657), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 152/491 (30%), Positives = 256/491 (52%), Gaps = 30/491 (6%)

Query: 80  IQAYGKNSMPDKALDVFQRMNEIFGCEAGIL---------CRKRQFEKAKRFLNSLWEKG 130
           I  + + S    AL V  +M ++ G E  I+         C  ++   A   ++ + E G
Sbjct: 125 INCFCRRSQLSLALAVLAKMMKL-GYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183

Query: 131 LKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAK 190
            KPD +++ T+I+GL        A+A+ D+M +RG + ++V Y  +++G  K+GD   A 
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLAL 243

Query: 191 EIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHG 250
            + +++  +  +  +VV YN +I+GLCK    D+ L ++  M       D FTY S I  
Sbjct: 244 SLLKKM-EKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISC 302

Query: 251 LCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-LN 309
           LC  G    A R+  +M+E  I  + VT++A+ID F + GK+ E  +L++ M ++    +
Sbjct: 303 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 362

Query: 310 VVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILN 369
           + +Y+ LI G   + ++DEA  ++EL+  K+C  +  T+  LI G CK            
Sbjct: 363 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKA----------K 412

Query: 370 EVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGC 429
            VEEG E        L   M + G   N  T  +L++GF QA   +NA  +FK+M   G 
Sbjct: 413 RVEEGME--------LFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGV 464

Query: 430 SPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALK 489
            P +++YN L++GLCK  +  +A    + +     +PD+ TY+++I G+C++ K++   +
Sbjct: 465 HPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWE 524

Query: 490 LCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLF 549
           L C    KG +P+V  YN +I G C  G  E+A  L   MK+   +PN  TYNTL+    
Sbjct: 525 LFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARL 584

Query: 550 KTGDCDKALEI 560
           + GD + + E+
Sbjct: 585 RDGDREASAEL 595



 Score =  243 bits (619), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 168/626 (26%), Positives = 302/626 (48%), Gaps = 51/626 (8%)

Query: 3   ISAKRLLNL--LKAEKNPHTALALFD---SATREPGYAHSPHLFHHILRRLIDPKLVVHV 57
           ++AKRL     L+   NP T  + F+   S   E  +A +   +  ILR           
Sbjct: 7   LTAKRLFVHWNLQGIGNPPTVPSFFNLCGSGCWERSFASASGDYREILR----------- 55

Query: 58  SRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFE 117
           +R+ ++I++       D A+ +     K S P  ++  F ++          + +  +FE
Sbjct: 56  NRLSDIIKV-------DDAVDLFGDMVK-SRPFPSIVEFNKL-------LSAVAKMNKFE 100

Query: 118 KAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILI 177
                   +   G+  D+Y+Y   IN   +   L  ALAV  +M + G E ++V  + L+
Sbjct: 101 LVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLL 160

Query: 178 DGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNER 237
           +G+        A  + +++V E    P+  T+  +I+GL    +  E + + D+M +   
Sbjct: 161 NGYCHSKRISDAVALVDQMV-EMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGC 219

Query: 238 EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFE 297
           + D  TY + ++GLCK G+++ A  + ++M +  I  D V YN +IDG C+   + +   
Sbjct: 220 QPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALN 279

Query: 298 LWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLC 356
           L+  M  KG   +V +Y+ LI  L   G+  +A  +   + E+  N +  T   LI+   
Sbjct: 280 LFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFV 339

Query: 357 KNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLEN 416
           K                  EG+L +A  L + M K     + +T +SL+NGF    +L+ 
Sbjct: 340 K------------------EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 381

Query: 417 AIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLIN 476
           A  +F+ M  K C P VV+Y+TLI G CK +R  E     +EM ++G   + +TY+ LI+
Sbjct: 382 AKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIH 441

Query: 477 GLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVP 536
           G  Q++  D A  +  Q +  G  P++  YNIL+ GLC  GK+  A+ ++  +++    P
Sbjct: 442 GFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEP 501

Query: 537 NLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFL 596
           ++ TYN +++G+ K G  +   E++ ++  + + P++I+YN  + G C      +A   L
Sbjct: 502 DIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLL 561

Query: 597 NDALCRGILPTTITWHILVRAVMNNG 622
                 G LP + T++ L+RA + +G
Sbjct: 562 KKMKEDGPLPNSGTYNTLIRARLRDG 587



 Score =  238 bits (607), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 133/493 (26%), Positives = 252/493 (51%), Gaps = 22/493 (4%)

Query: 133 PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEI 192
           P +  +  +++ + K       +++ ++M   G+  ++  Y+I I+ F ++     A  +
Sbjct: 81  PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140

Query: 193 WERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLC 252
             ++ M+    P++VT + ++NG C   R  + + + D+M +   + D+FT+ + IHGL 
Sbjct: 141 LAKM-MKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLF 199

Query: 253 KAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL--NV 310
                  A  +  +MV+ G   D VTY  +++G C+ G I     L + M  KG +  +V
Sbjct: 200 LHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKM-EKGKIEADV 258

Query: 311 VSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNE 370
           V YN +I GL +   +D+A++++  +  K    D  T+  LI+ LC              
Sbjct: 259 VIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCN------------- 305

Query: 371 VEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCS 430
                 GR +DA+ L++ M +     N  T ++L++ F++  KL  A  L+ EM ++   
Sbjct: 306 -----YGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 360

Query: 431 PTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKL 490
           P + +Y++LING C  +R  EA    + M+ K   P+++TYS LI G C++K+++  ++L
Sbjct: 361 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMEL 420

Query: 491 CCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK 550
             +  Q+G   +   Y  LIHG   A   ++A  ++  M      PN++TYN L+DGL K
Sbjct: 421 FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCK 480

Query: 551 TGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTIT 610
            G   KA+ ++ ++    + PDI +YNI ++G+C   ++ D +E   +   +G+ P  I 
Sbjct: 481 NGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIA 540

Query: 611 WHILVRAVMNNGA 623
           ++ ++      G+
Sbjct: 541 YNTMISGFCRKGS 553



 Score =  197 bits (500), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 125/431 (29%), Positives = 218/431 (50%), Gaps = 53/431 (12%)

Query: 118 KAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILI 177
           +A   ++ + ++G +PD+ +YGTV+NGL K GD+  AL++  +M +  +E +VV YN +I
Sbjct: 206 EAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTII 265

Query: 178 DGFFK----------------KG----------------DYMRAKEIWERL--VMETSVY 203
           DG  K                KG                +Y R  +    L  ++E  + 
Sbjct: 266 DGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKIN 325

Query: 204 PNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERV 263
           PNVVT++ +I+   K G+  E  +++D M K   + D FTY S I+G C    ++ A+ +
Sbjct: 326 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 385

Query: 264 YREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIRGLLE 322
           +  M+    F + VTY+ +I GFC+A +++E  EL+  M ++G + N V+Y  LI G  +
Sbjct: 386 FELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQ 445

Query: 323 NGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADA 382
               D A  +++ +     + +  T+ +L++GLCKNG L KA+ +   ++          
Sbjct: 446 ARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQ---------- 495

Query: 383 ASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLING 442
                   +   + + YT N ++ G  +A K+E+   LF  +S KG SP V++YNT+I+G
Sbjct: 496 --------RSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISG 547

Query: 443 LCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPD 502
            C+     EA S +K+M E G  P+  TY+ LI    +    + + +L  +    GF  D
Sbjct: 548 FCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGD 607

Query: 503 VTMYNILIHGL 513
            +   ++ + L
Sbjct: 608 ASTIGLVTNML 618


>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
           OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
          Length = 907

 Score =  257 bits (657), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 169/597 (28%), Positives = 298/597 (49%), Gaps = 40/597 (6%)

Query: 61  LELIEIQKC--YCPEDVALS-VIQAYGKNSMPDKALDVFQRMNEIFGCEAGI-------- 109
           LE+++   C  + P + A+S +++   K    ++AL++ +R+ + FG    +        
Sbjct: 317 LEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVD-FGVSPNLFVYNALID 375

Query: 110 -LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVET 168
            LC+ R+F +A+   + + + GL+P+  +Y  +I+   + G L  AL+   EM + G++ 
Sbjct: 376 SLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKL 435

Query: 169 NVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEM 228
           +V  YN LI+G  K GD + A E +   ++   + P VVTY  ++ G C  G+ ++ L +
Sbjct: 436 SVYPYNSLINGHCKFGD-ISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRL 494

Query: 229 WDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR 288
           +  M         +T+ + + GL +AG +  A +++ EM E  +  + VTYN MI+G+C 
Sbjct: 495 YHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCE 554

Query: 289 AGKIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTT 347
            G + + FE  + M  KG + +  SY  LI GL   G+  EA    + L + NC  +   
Sbjct: 555 EGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEIC 614

Query: 348 HGVLINGLCKNGYLNKAIQILNEVEEGG-------EGRLADAA----------SLVNRMD 390
           +  L++G C+ G L +A+ +  E+ + G        G L D +           L+  M 
Sbjct: 615 YTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMH 674

Query: 391 KHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFG 450
             G K +     S+++   +    + A  ++  M  +GC P  V+Y  +INGLCK     
Sbjct: 675 DRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVN 734

Query: 451 EAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDM--ALKLCCQFLQKGFTPDVTMYNI 508
           EA     +M      P+ +TY   ++ L + + +DM  A++L    L KG   +   YN+
Sbjct: 735 EAEVLCSKMQPVSSVPNQVTYGCFLDILTKGE-VDMQKAVELHNAIL-KGLLANTATYNM 792

Query: 509 LIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEER 568
           LI G C  G++E+A +L + M      P+ +TY T+++ L +  D  KA+E+WN + E+ 
Sbjct: 793 LIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKG 852

Query: 569 LRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNGAST 625
           +RPD ++YN  + G C    M  A E  N+ L +G++P   T     R   +N  S+
Sbjct: 853 IRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKT----SRTTTSNDTSS 905



 Score =  232 bits (592), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 171/606 (28%), Positives = 270/606 (44%), Gaps = 99/606 (16%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
           L + R F  A    N +   G++PDVY Y  VI  L +  DL  A  +   M   G + N
Sbjct: 202 LVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVN 261

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVY-----PNVVTYNVMINGLCKCGRFDE 224
           +V YN+LIDG  KK      +++WE + ++  +      P+VVTY  ++ GLCK   F+ 
Sbjct: 262 IVPYNVLIDGLCKK------QKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEI 315

Query: 225 CLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMID 284
            LEM D M             S + GL K G +E A  + + +V+ G+  +   YNA+ID
Sbjct: 316 GLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALID 375

Query: 285 GFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNA 343
             C+  K  E   L++ MG+ G   N V+Y+ILI      GK+D A+S    + +     
Sbjct: 376 SLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKL 435

Query: 344 DSTTHGVLINGLCKNGYLNKA----IQILNEVEE----------GG---EGRLADAASLV 386
               +  LING CK G ++ A     +++N+  E          GG   +G++  A  L 
Sbjct: 436 SVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLY 495

Query: 387 NRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKV 446
           + M   G   + YT  +L++G  +A  + +A+ LF EM+     P  V+YN +I G C+ 
Sbjct: 496 HEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEE 555

Query: 447 ERFGEAYSFVKEMLEKGWKPDMITYSLLINGLC--------------------------- 479
               +A+ F+KEM EKG  PD  +Y  LI+GLC                           
Sbjct: 556 GDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICY 615

Query: 480 --------QSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKK 531
                   +  K++ AL +C + +Q+G   D+  Y +LI G       +    L   M  
Sbjct: 616 TGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHD 675

Query: 532 RNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCS------ 585
           R   P+ V Y +++D   KTGD  +A  IW+ ++ E   P+ ++Y   + GLC       
Sbjct: 676 RGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNE 735

Query: 586 ----CSRMSDAFEF-------------------------LNDALCRGILPTTITWHILVR 616
               CS+M                               L++A+ +G+L  T T+++L+R
Sbjct: 736 AEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIR 795

Query: 617 AVMNNG 622
                G
Sbjct: 796 GFCRQG 801



 Score =  208 bits (530), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 123/401 (30%), Positives = 202/401 (50%), Gaps = 18/401 (4%)

Query: 243 TYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVM 302
           T  + +HGL K  +   A  ++ +MV  GI  D   Y  +I   C    +    E+   M
Sbjct: 194 TLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHM 253

Query: 303 GRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYL 361
              GC +N+V YN+LI GL +  KV EA+ I + L  K+   D  T+  L+ GLCK    
Sbjct: 254 EATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEF 313

Query: 362 NKAIQILNE---------------VEEG--GEGRLADAASLVNRMDKHGCKLNAYTCNSL 404
              +++++E               + EG    G++ +A +LV R+   G   N +  N+L
Sbjct: 314 EIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNAL 373

Query: 405 MNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGW 464
           ++   +  K   A  LF  M + G  P  V+Y+ LI+  C+  +   A SF+ EM++ G 
Sbjct: 374 IDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGL 433

Query: 465 KPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQ 524
           K  +  Y+ LING C+   I  A     + + K   P V  Y  L+ G CS GK+  AL+
Sbjct: 434 KLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALR 493

Query: 525 LYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLC 584
           LY  M  +   P++ T+ TL+ GLF+ G    A++++N + E  ++P+ ++YN+ ++G C
Sbjct: 494 LYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYC 553

Query: 585 SCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNGAST 625
               MS AFEFL +   +GI+P T ++  L+  +   G ++
Sbjct: 554 EEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQAS 594



 Score =  202 bits (513), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 152/528 (28%), Positives = 252/528 (47%), Gaps = 55/528 (10%)

Query: 121 RFLNSL-WEKGLKPDVYSYGTVINGLVKSGDLLGALA--------------VFDEMF--- 162
           RF N L   +G      S+  +I+ LVK+     A +              VF+ +F   
Sbjct: 89  RFFNFLGLHRGFDHSTASFCILIHALVKANLFWPASSLLQTLLLRALKPSDVFNVLFSCY 148

Query: 163 ERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRF 222
           E+   ++   +++LI  + +    +    +++ ++ + S+ P V T + +++GL K   F
Sbjct: 149 EKCKLSSSSSFDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHF 208

Query: 223 DECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAM 282
              +E+++ M       D + Y   I  LC+  ++  A+ +   M  +G  V+ V YN +
Sbjct: 209 GLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVL 268

Query: 283 IDGFCRAGKIKECFELWEVMGRKGCL-------NVVSYNILIRGLLENGKVDEAISIWEL 335
           IDG C+  K+      WE +G K  L       +VV+Y  L+ GL    KV E     E+
Sbjct: 269 IDGLCKKQKV------WEAVGIKKDLAGKDLKPDVVTYCTLVYGLC---KVQEFEIGLEM 319

Query: 336 LREKNCNADSTTHGV---LINGLCKNGYLNKAIQILNEVEEGG----------------E 376
           + E  C   S +      L+ GL K G + +A+ ++  V + G                +
Sbjct: 320 MDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCK 379

Query: 377 GR-LADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVS 435
           GR   +A  L +RM K G + N  T + L++ F +  KL+ A+    EM   G   +V  
Sbjct: 380 GRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYP 439

Query: 436 YNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFL 495
           YN+LING CK      A  F+ EM+ K  +P ++TY+ L+ G C   KI+ AL+L  +  
Sbjct: 440 YNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMT 499

Query: 496 QKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCD 555
            KG  P +  +  L+ GL  AG + DA++L++ M + N  PN VTYN +++G  + GD  
Sbjct: 500 GKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMS 559

Query: 556 KALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRG 603
           KA E    + E+ + PD  SY   + GLC   + S+A  F+ D L +G
Sbjct: 560 KAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFV-DGLHKG 606


>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
           SV=1
          Length = 637

 Score =  257 bits (656), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 146/474 (30%), Positives = 263/474 (55%), Gaps = 20/474 (4%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
            CR R+   A   +  + + G +P+  ++ T+INGL   G +  AL + D M E G + +
Sbjct: 133 FCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPD 192

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
           ++  N L++G    G    A  + +++V E    PN VTY  ++N +CK G+    +E+ 
Sbjct: 193 LITINTLVNGLCLSGKEAEAMLLIDKMV-EYGCQPNAVTYGPVLNVMCKSGQTALAMELL 251

Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
            +M++   + D+  Y   I GLCK G+++ A  ++ EM   GI  + +TYN +I GFC A
Sbjct: 252 RKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNA 311

Query: 290 GKIKECFELW-EVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348
           G+  +  +L  +++ RK   NVV++++LI   ++ GK+ EA  + + +  +    D+ T+
Sbjct: 312 GRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITY 371

Query: 349 GVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGF 408
             LI+G CK  +L+KA Q                  +V+ M   GC  N  T N L+NG+
Sbjct: 372 TSLIDGFCKENHLDKANQ------------------MVDLMVSKGCDPNIRTFNILINGY 413

Query: 409 IQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM 468
            +A+++++ + LF++MS +G     V+YNTLI G C++ +   A    +EM+ +   P++
Sbjct: 414 CKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNI 473

Query: 469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSN 528
           +TY +L++GLC + + + AL++  +  +     D+ +YNI+IHG+C+A KV+DA  L+ +
Sbjct: 474 VTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCS 533

Query: 529 MKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKG 582
           +  +   P + TYN ++ GL K G   +A  ++  + E+   PD  +YNI ++ 
Sbjct: 534 LPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRA 587



 Score =  256 bits (653), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 151/491 (30%), Positives = 253/491 (51%), Gaps = 20/491 (4%)

Query: 133 PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEI 192
           P V  +  + + + K+      LA+  +M  +G+  N+   +I+I+ F +      A   
Sbjct: 86  PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 145

Query: 193 WERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLC 252
             +++ +    PN +T++ +INGLC  GR  E LE+ DRM +   + D  T  + ++GLC
Sbjct: 146 MGKII-KLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLC 204

Query: 253 KAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-LNVV 311
            +G    A  +  +MVE G   +AVTY  +++  C++G+     EL   M  +   L+ V
Sbjct: 205 LSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAV 264

Query: 312 SYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEV 371
            Y+I+I GL ++G +D A +++  +  K    +  T+ +LI G C               
Sbjct: 265 KYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFC--------------- 309

Query: 372 EEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSP 431
                GR  D A L+  M K     N  T + L++ F++  KL  A  L KEM  +G +P
Sbjct: 310 ---NAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAP 366

Query: 432 TVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLC 491
             ++Y +LI+G CK     +A   V  M+ KG  P++ T+++LING C++ +ID  L+L 
Sbjct: 367 DTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELF 426

Query: 492 CQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKT 551
            +   +G   D   YN LI G C  GK+  A +L+  M  R   PN+VTY  L+DGL   
Sbjct: 427 RKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDN 486

Query: 552 GDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITW 611
           G+ +KALEI+  I + ++  DI  YNI + G+C+ S++ DA++       +G+ P   T+
Sbjct: 487 GESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTY 546

Query: 612 HILVRAVMNNG 622
           +I++  +   G
Sbjct: 547 NIMIGGLCKKG 557



 Score =  244 bits (624), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 150/545 (27%), Positives = 271/545 (49%), Gaps = 28/545 (5%)

Query: 90  DKALDVFQRMNEI--------FGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTV 141
           D A+D+F+ M           F      + + +Q++        +  KG+  ++Y+   +
Sbjct: 70  DDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIM 129

Query: 142 INGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETS 201
           IN   +   L  A +   ++ + G E N + ++ LI+G   +G    A E+ +R+V E  
Sbjct: 130 INCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMV-EMG 188

Query: 202 VYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAE 261
             P+++T N ++NGLC  G+  E + + D+M +   + ++ TY   ++ +CK+G    A 
Sbjct: 189 HKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAM 248

Query: 262 RVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKG-CLNVVSYNILIRGL 320
            + R+M E  I +DAV Y+ +IDG C+ G +   F L+  M  KG   N+++YNILI G 
Sbjct: 249 ELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGF 308

Query: 321 LENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLA 380
              G+ D+   +   + ++  N +  T  VLI+   K                  EG+L 
Sbjct: 309 CNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVK------------------EGKLR 350

Query: 381 DAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLI 440
           +A  L   M   G   +  T  SL++GF + + L+ A  +   M  KGC P + ++N LI
Sbjct: 351 EAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILI 410

Query: 441 NGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFT 500
           NG CK  R  +     ++M  +G   D +TY+ LI G C+  K+++A +L  + + +   
Sbjct: 411 NGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVP 470

Query: 501 PDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEI 560
           P++  Y IL+ GLC  G+ E AL+++  ++K     ++  YN ++ G+      D A ++
Sbjct: 471 PNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDL 530

Query: 561 WNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMN 620
           +  +  + ++P + +YNI + GLC    +S+A          G  P   T++IL+RA + 
Sbjct: 531 FCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLG 590

Query: 621 NGAST 625
           +G +T
Sbjct: 591 DGDAT 595



 Score =  207 bits (528), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 138/481 (28%), Positives = 246/481 (51%), Gaps = 34/481 (7%)

Query: 56  HVSRILELIE--IQKCYCPEDVAL-SVIQAYGKNSMPDKALDVFQRMNEIFGCEAG---- 108
            VS  LEL++  ++  + P+ + + +++     +    +A+ +  +M E +GC+      
Sbjct: 173 RVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVE-YGCQPNAVTY 231

Query: 109 -----ILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFE 163
                ++C+  Q   A   L  + E+ +K D   Y  +I+GL K G L  A  +F+EM  
Sbjct: 232 GPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEM 291

Query: 164 RGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFD 223
           +G+ TN++ YNILI GF   G +    ++  R +++  + PNVVT++V+I+   K G+  
Sbjct: 292 KGITTNIITYNILIGGFCNAGRWDDGAKLL-RDMIKRKINPNVVTFSVLIDSFVKEGKLR 350

Query: 224 ECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMI 283
           E  E+   M       D+ TY S I G CK  +++ A ++   MV  G   +  T+N +I
Sbjct: 351 EAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILI 410

Query: 284 DGFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCN 342
           +G+C+A +I +  EL+  M  +G + + V+YN LI+G  E GK++ A  +++ +  +   
Sbjct: 411 NGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVP 470

Query: 343 ADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCN 402
            +  T+ +L++GLC NG   KA++I  ++E                  K   +L+    N
Sbjct: 471 PNIVTYKILLDGLCDNGESEKALEIFEKIE------------------KSKMELDIGIYN 512

Query: 403 SLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEK 462
            +++G   ASK+++A  LF  +  KG  P V +YN +I GLCK     EA    ++M E 
Sbjct: 513 IIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEED 572

Query: 463 GWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDA 522
           G  PD  TY++LI           ++KL  +  + GF+ D +   ++I  L S G+++ +
Sbjct: 573 GHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDML-SDGRLKKS 631

Query: 523 L 523
            
Sbjct: 632 F 632



 Score =  109 bits (273), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 119/245 (48%), Gaps = 35/245 (14%)

Query: 413 KLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYS 472
           K ++AI LF++M      PTV+ ++ L + + K +++    +  K+M  KG   ++ T S
Sbjct: 68  KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLS 127

Query: 473 LLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKR 532
           ++IN  C+ +K+ +A     + ++ G+ P+   ++ LI+GLC  G+V +AL+L   M + 
Sbjct: 128 IMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEM 187

Query: 533 NCVPNLVTYNTLMDGL-----------------------------------FKTGDCDKA 557
              P+L+T NTL++GL                                    K+G    A
Sbjct: 188 GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALA 247

Query: 558 LEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRA 617
           +E+   + E  ++ D + Y+I + GLC    + +AF   N+   +GI    IT++IL+  
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGG 307

Query: 618 VMNNG 622
             N G
Sbjct: 308 FCNAG 312


>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
           OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
          Length = 874

 Score =  256 bits (655), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 187/669 (27%), Positives = 318/669 (47%), Gaps = 66/669 (9%)

Query: 11  LLKAEKNPHTALALFD---SATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELI--- 64
           LLK   NP  A  +F    S+  E  +  S      I R L+  K+   +  +  LI   
Sbjct: 9   LLKNTNNPRLAWRIFKRIFSSPSEESHGISLDATPTIARILVRAKMHEEIQELHNLILSS 68

Query: 65  EIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEA------GILCRKRQFEK 118
            IQK        LSV+  + K++  DKA   FQ +   F           +L      E+
Sbjct: 69  SIQKTKLSS--LLSVVSIFAKSNHIDKAFPQFQLVRSRFPENKPSVYLYNLLLESCIKER 126

Query: 119 AKRFLNSLWEK----GLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYN 174
              F++ L++     G+ P  Y++  +I  L  S  +  A  +FDEM E+G + N   + 
Sbjct: 127 RVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFG 186

Query: 175 ILIDGFFKKGDYMRAKEIWERLVMET-SVYPNVVTYNVMINGLCKCGRFDECLEMWDRMK 233
           IL+ G+ K G   +  E+     ME+  V PN V YN +++  C+ GR D+  +M ++M+
Sbjct: 187 ILVRGYCKAGLTDKGLELLN--AMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMR 244

Query: 234 KNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIF----VDAVTYNAMIDGFCRA 289
           +     D  T+ S I  LCK G V  A R++ +M           +++TYN M+ GFC+ 
Sbjct: 245 EEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKV 304

Query: 290 GKIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348
           G +++   L+E +     L ++ SYNI ++GL+ +GK  EA ++ + + +K       ++
Sbjct: 305 GLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSY 364

Query: 349 GVLINGLCKNGYLNKAIQILNEVEEGG-----------------EGRLADAASLVNRMDK 391
            +L++GLCK G L+ A  I+  ++  G                  G++  A SL+  M +
Sbjct: 365 NILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMR 424

Query: 392 HGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGE 451
           + C  NAYTCN L++   +  ++  A  L ++M+ KG     V+ N +++GLC      +
Sbjct: 425 NNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDK 484

Query: 452 AYSFVKEM-----------------------LEKGWKPDMITYSLLINGLCQSKKIDMAL 488
           A   VK M                       +E    PD+ITYS L+NGLC++ +   A 
Sbjct: 485 AIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAK 544

Query: 489 KLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGL 548
            L  + + +   PD   YNI IH  C  GK+  A ++  +M+K+ C  +L TYN+L+ GL
Sbjct: 545 NLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGL 604

Query: 549 FKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTT 608
                  +   + + + E+ + P+I +YN  ++ LC   ++ DA   L++ + + I P  
Sbjct: 605 GIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNV 664

Query: 609 ITWHILVRA 617
            ++  L+ A
Sbjct: 665 FSFKYLIEA 673



 Score =  236 bits (601), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 164/604 (27%), Positives = 291/604 (48%), Gaps = 20/604 (3%)

Query: 33  GYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKA 92
           G A   + F+ ++R L D   V     + + +  + C   E     +++ Y K  + DK 
Sbjct: 142 GIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKG 201

Query: 93  LDVFQRMNE--------IFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVING 144
           L++   M          I+       CR+ + + +++ +  + E+GL PD+ ++ + I+ 
Sbjct: 202 LELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISA 261

Query: 145 LVKSGDLLGALAVFDEM----FERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMET 200
           L K G +L A  +F +M    +      N + YN+++ GF K G    AK ++E  + E 
Sbjct: 262 LCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFES-IREN 320

Query: 201 SVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGA 260
               ++ +YN+ + GL + G+F E   +  +M         ++Y   + GLCK G +  A
Sbjct: 321 DDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDA 380

Query: 261 ERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIRG 319
           + +   M  +G+  DAVTY  ++ G+C  GK+     L + M R  CL N  + NIL+  
Sbjct: 381 KTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHS 440

Query: 320 LLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRL 379
           L + G++ EA  +   + EK    D+ T  ++++GLC +G L+KAI+I+  +   G   L
Sbjct: 441 LWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAAL 500

Query: 380 ADAA-SLVNRMD----KHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVV 434
            +   S +  +D    ++ C  +  T ++L+NG  +A +   A  LF EM  +   P  V
Sbjct: 501 GNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSV 560

Query: 435 SYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQF 494
           +YN  I+  CK  +   A+  +K+M +KG    + TY+ LI GL    +I     L  + 
Sbjct: 561 AYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEM 620

Query: 495 LQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDC 554
            +KG +P++  YN  I  LC   KVEDA  L   M ++N  PN+ ++  L++   K  D 
Sbjct: 621 KEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDF 680

Query: 555 DKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHIL 614
           D A E++   +    + + + Y++    L +  ++  A E L   L RG    T  +  L
Sbjct: 681 DMAQEVFETAVSICGQKEGL-YSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDL 739

Query: 615 VRAV 618
           V ++
Sbjct: 740 VESL 743



 Score =  197 bits (500), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 140/547 (25%), Positives = 250/547 (45%), Gaps = 50/547 (9%)

Query: 107 AGILCRKRQFEKAKRFLNSLWEKGL-KPDVYSYGTVINGLVKSGDLLGALAVFDEMFERG 165
           A IL R +  E+ +   N +    + K  + S  +V++   KS  +  A   F  +  R 
Sbjct: 46  ARILVRAKMHEEIQELHNLILSSSIQKTKLSSLLSVVSIFAKSNHIDKAFPQFQLVRSRF 105

Query: 166 VET--NVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFD 223
            E   +V  YN+L++   K+        +++ +V+   + P   T+N++I  LC     D
Sbjct: 106 PENKPSVYLYNLLLESCIKERRVEFVSWLYKDMVL-CGIAPQTYTFNLLIRALCDSSCVD 164

Query: 224 ECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMI 283
              E++D M +   + + FT+   + G CKAG  +    +   M   G+  + V YN ++
Sbjct: 165 AARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIV 224

Query: 284 DGFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKN-- 340
             FCR G+  +  ++ E M  +G + ++V++N  I  L + GKV +A  I+  +      
Sbjct: 225 SSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYL 284

Query: 341 --CNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNA 398
                +S T+ +++ G CK G L  A  +   + E       D ASL             
Sbjct: 285 GLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIREND-----DLASL------------- 326

Query: 399 YTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKE 458
            + N  + G ++  K   A  + K+M+ KG  P++ SYN L++GLCK+    +A + V  
Sbjct: 327 QSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGL 386

Query: 459 MLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGK 518
           M   G  PD +TY  L++G C   K+D A  L  + ++    P+    NIL+H L   G+
Sbjct: 387 MKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGR 446

Query: 519 VEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIW----------------- 561
           + +A +L   M ++    + VT N ++DGL  +G+ DKA+EI                  
Sbjct: 447 ISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNS 506

Query: 562 ------NHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILV 615
                 + ++E    PD+I+Y+  L GLC   R ++A     + +   + P ++ ++I +
Sbjct: 507 YIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFI 566

Query: 616 RAVMNNG 622
                 G
Sbjct: 567 HHFCKQG 573



 Score = 79.7 bits (195), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 13/241 (5%)

Query: 72  PEDVALSV-IQAYGKNSMPDKALDVFQRMNEIFGCEAGI---------LCRKRQFEKAKR 121
           P+ VA ++ I  + K      A  V + M E  GC   +         L  K Q  +   
Sbjct: 557 PDSVAYNIFIHHFCKQGKISSAFRVLKDM-EKKGCHKSLETYNSLILGLGIKNQIFEIHG 615

Query: 122 FLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFF 181
            ++ + EKG+ P++ +Y T I  L +   +  A  + DEM ++ +  NV  +  LI+ F 
Sbjct: 616 LMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFC 675

Query: 182 KKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDS 241
           K  D+  A+E++E  V        +  Y++M N L   G+  +  E+ + +     E  +
Sbjct: 676 KVPDFDMAQEVFETAVSICGQKEGL--YSLMFNELLAAGQLLKATELLEAVLDRGFELGT 733

Query: 242 FTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEV 301
           F Y   +  LCK   +E A  +  +M++ G   D      +IDG  + G  KE     + 
Sbjct: 734 FLYKDLVESLCKKDELEVASGILHKMIDRGYGFDPAALMPVIDGLGKMGNKKEANSFADK 793

Query: 302 M 302
           M
Sbjct: 794 M 794



 Score = 42.0 bits (97), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 9/181 (4%)

Query: 30  REPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALS-VIQAYGKNSM 88
           +E G + +   ++  ++ L + + V   + +L+ + +QK   P   +   +I+A+ K   
Sbjct: 621 KEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEM-MQKNIAPNVFSFKYLIEAFCKVPD 679

Query: 89  PDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTV 141
            D A +VF+    I G + G+       L    Q  KA   L ++ ++G +   + Y  +
Sbjct: 680 FDMAQEVFETAVSICGQKEGLYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDL 739

Query: 142 INGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETS 201
           +  L K  +L  A  +  +M +RG   +      +IDG  K G+   A    ++++   S
Sbjct: 740 VESLCKKDELEVASGILHKMIDRGYGFDPAALMPVIDGLGKMGNKKEANSFADKMMEMAS 799

Query: 202 V 202
           V
Sbjct: 800 V 800


>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
           SV=1
          Length = 619

 Score =  256 bits (653), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 157/535 (29%), Positives = 279/535 (52%), Gaps = 27/535 (5%)

Query: 90  DKALDVFQRMNEIFGCEAGI----LC----RKRQFEKAKRFLNSLWEKGLKPDVYSYGTV 141
           + A+D+F+ M +       I    LC    R +Q++    F   +   G++ D+Y+   +
Sbjct: 52  NDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIM 111

Query: 142 INGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETS 201
           IN   +   LL A +V    ++ G E + + ++ L++GF  +G    A  + +R+V E  
Sbjct: 112 INCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMV-EMK 170

Query: 202 VYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAE 261
             P++VT + +INGLC  GR  E L + DRM +   + D  TY   ++ LCK+GN   A 
Sbjct: 171 QRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALAL 230

Query: 262 RVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-LNVVSYNILIRGL 320
            ++R+M E  I    V Y+ +ID  C+ G   +   L+  M  KG   +VV+Y+ LI GL
Sbjct: 231 DLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 290

Query: 321 LENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG----- 375
             +GK D+   +   +  +N   D  T   LI+   K G L +A ++ NE+   G     
Sbjct: 291 CNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDT 350

Query: 376 ------------EGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKE 423
                       E  L +A  + + M   GC+ +  T + L+N + +A ++++ + LF+E
Sbjct: 351 ITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFRE 410

Query: 424 MSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKK 483
           +S KG  P  ++YNTL+ G C+  +   A    +EM+ +G  P ++TY +L++GLC + +
Sbjct: 411 ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGE 470

Query: 484 IDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNT 543
           ++ AL++  +  +   T  + +YNI+IHG+C+A KV+DA  L+ ++  +   P++VTYN 
Sbjct: 471 LNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNV 530

Query: 544 LMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLND 598
           ++ GL K G   +A  ++  + E+   PD  +YNI ++     S +  + E + +
Sbjct: 531 MIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEE 585



 Score =  250 bits (639), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 139/460 (30%), Positives = 243/460 (52%), Gaps = 20/460 (4%)

Query: 165 GVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDE 224
           G+E ++    I+I+ + +K   + A  +  R   +    P+ +T++ ++NG C  GR  E
Sbjct: 100 GIEHDMYTMTIMINCYCRKKKLLFAFSVLGR-AWKLGYEPDTITFSTLVNGFCLEGRVSE 158

Query: 225 CLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMID 284
            + + DRM + ++  D  T  + I+GLC  G V  A  +   MVE G   D VTY  +++
Sbjct: 159 AVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLN 218

Query: 285 GFCRAGKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNA 343
             C++G      +L+  M  +    +VV Y+I+I  L ++G  D+A+S++  +  K   A
Sbjct: 219 RLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKA 278

Query: 344 DSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNS 403
           D  T+  LI GLC                   +G+  D A ++  M       +  T ++
Sbjct: 279 DVVTYSSLIGGLCN------------------DGKWDDGAKMLREMIGRNIIPDVVTFSA 320

Query: 404 LMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKG 463
           L++ F++  KL  A  L+ EM  +G +P  ++YN+LI+G CK     EA      M+ KG
Sbjct: 321 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKG 380

Query: 464 WKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDAL 523
            +PD++TYS+LIN  C++K++D  ++L  +   KG  P+   YN L+ G C +GK+  A 
Sbjct: 381 CEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAK 440

Query: 524 QLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGL 583
           +L+  M  R   P++VTY  L+DGL   G+ +KALEI+  + + R+   I  YNI + G+
Sbjct: 441 ELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGM 500

Query: 584 CSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNGA 623
           C+ S++ DA+        +G+ P  +T+++++  +   G+
Sbjct: 501 CNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGS 540



 Score =  216 bits (549), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 127/422 (30%), Positives = 223/422 (52%), Gaps = 20/422 (4%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
           LC K +  +A   ++ + E G +PD  +YG V+N L KSG+   AL +F +M ER ++ +
Sbjct: 185 LCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKAS 244

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
           VV Y+I+ID   K G +  A  ++  + M+  +  +VVTY+ +I GLC  G++D+  +M 
Sbjct: 245 VVQYSIVIDSLCKDGSFDDALSLFNEMEMK-GIKADVVTYSSLIGGLCNDGKWDDGAKML 303

Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
             M       D  T+ + I    K G +  A+ +Y EM+  GI  D +TYN++IDGFC+ 
Sbjct: 304 REMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKE 363

Query: 290 GKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348
             + E  +++++M  KGC  ++V+Y+ILI    +  +VD+ + ++  +  K    ++ T+
Sbjct: 364 NCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITY 423

Query: 349 GVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGF 408
             L+ G C++G LN A ++  E                  M   G   +  T   L++G 
Sbjct: 424 NTLVLGFCQSGKLNAAKELFQE------------------MVSRGVPPSVVTYGILLDGL 465

Query: 409 IQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM 468
               +L  A+ +F++M +   +  +  YN +I+G+C   +  +A+S    + +KG KPD+
Sbjct: 466 CDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDV 525

Query: 469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSN 528
           +TY+++I GLC+   +  A  L  +  + G TPD   YNILI        +  +++L   
Sbjct: 526 VTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEE 585

Query: 529 MK 530
           MK
Sbjct: 586 MK 587



 Score =  192 bits (487), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 124/439 (28%), Positives = 214/439 (48%), Gaps = 31/439 (7%)

Query: 56  HVSRILELIE--IQKCYCPEDVAL-SVIQAYGKNSMPDKALDVFQRMNE--------IFG 104
            VS  L LI+  ++  + P++V    V+    K+     ALD+F++M E         + 
Sbjct: 190 RVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYS 249

Query: 105 CEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER 164
                LC+   F+ A    N +  KG+K DV +Y ++I GL   G       +  EM  R
Sbjct: 250 IVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR 309

Query: 165 GVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDE 224
            +  +VV ++ LID F K+G  + AKE++  ++    + P+ +TYN +I+G CK     E
Sbjct: 310 NIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITR-GIAPDTITYNSLIDGFCKENCLHE 368

Query: 225 CLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMID 284
             +M+D M     E D  TY   I+  CKA  V+   R++RE+   G+  + +TYN ++ 
Sbjct: 369 ANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVL 428

Query: 285 GFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNA 343
           GFC++GK+    EL++ M  +G   +VV+Y IL+ GL +NG++++A+ I+E +++     
Sbjct: 429 GFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTL 488

Query: 344 DSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNS 403
               + ++I+G+C                     ++ DA SL   +   G K +  T N 
Sbjct: 489 GIGIYNIIIHGMCN------------------ASKVDDAWSLFCSLSDKGVKPDVVTYNV 530

Query: 404 LMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKG 463
           ++ G  +   L  A  LF++M   GC+P   +YN LI           +   ++EM   G
Sbjct: 531 MIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCG 590

Query: 464 WKPDMITYSLLINGLCQSK 482
           +  D  T  ++I+ L   +
Sbjct: 591 FSADSSTIKMVIDMLSDRR 609



 Score =  139 bits (351), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 129/234 (55%)

Query: 389 MDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVER 448
           M+ +G + + YT   ++N + +  KL  A  +     + G  P  ++++TL+NG C   R
Sbjct: 96  MELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGR 155

Query: 449 FGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNI 508
             EA + V  M+E   +PD++T S LINGLC   ++  AL L  + ++ GF PD   Y  
Sbjct: 156 VSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGP 215

Query: 509 LIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEER 568
           +++ LC +G    AL L+  M++RN   ++V Y+ ++D L K G  D AL ++N +  + 
Sbjct: 216 VLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKG 275

Query: 569 LRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
           ++ D+++Y+  + GLC+  +  D  + L + + R I+P  +T+  L+   +  G
Sbjct: 276 IKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEG 329



 Score =  107 bits (266), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 118/245 (48%)

Query: 378 RLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYN 437
           ++ DA  L   M +          N L +   +  + +  +   K M   G    + +  
Sbjct: 50  KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 109

Query: 438 TLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQK 497
            +IN  C+ ++   A+S +    + G++PD IT+S L+NG C   ++  A+ L  + ++ 
Sbjct: 110 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 169

Query: 498 GFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKA 557
              PD+   + LI+GLC  G+V +AL L   M +    P+ VTY  +++ L K+G+   A
Sbjct: 170 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALA 229

Query: 558 LEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRA 617
           L+++  + E  ++  ++ Y+I +  LC      DA    N+   +GI    +T+  L+  
Sbjct: 230 LDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGG 289

Query: 618 VMNNG 622
           + N+G
Sbjct: 290 LCNDG 294



 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 114/220 (51%), Gaps = 1/220 (0%)

Query: 404 LMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKG 463
           L NG +   K+ +AI LF+ M +    PT + +N L + + + +++     F K M   G
Sbjct: 42  LRNGIVDI-KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNG 100

Query: 464 WKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDAL 523
            + DM T +++IN  C+ KK+  A  +  +  + G+ PD   ++ L++G C  G+V +A+
Sbjct: 101 IEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAV 160

Query: 524 QLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGL 583
            L   M +    P+LVT +TL++GL   G   +AL + + ++E   +PD ++Y   L  L
Sbjct: 161 ALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRL 220

Query: 584 CSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNGA 623
           C     + A +       R I  + + + I++ ++  +G+
Sbjct: 221 CKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGS 260



 Score =  100 bits (249), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 125/308 (40%), Gaps = 64/308 (20%)

Query: 20  TALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSV 79
           T  AL D   +E     +  L++ ++ R I P  + + S I         +C E+     
Sbjct: 317 TFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLI-------DGFCKENCLHEA 369

Query: 80  IQAYGKNSMPDKALDVFQRMNEIFGCEAGIL---------CRKRQFEKAKRFLNSLWEKG 130
            Q +  + M  K            GCE  I+         C+ ++ +   R    +  KG
Sbjct: 370 NQMF--DLMVSK------------GCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKG 415

Query: 131 LKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAK 190
           L P+  +Y T++ G  +SG L  A  +F EM  RGV  +VV Y IL+DG    G+  +A 
Sbjct: 416 LIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKAL 475

Query: 191 EIWERL----------------------------------VMETSVYPNVVTYNVMINGL 216
           EI+E++                                  + +  V P+VVTYNVMI GL
Sbjct: 476 EIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGL 535

Query: 217 CKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDA 276
           CK G   E   ++ +MK++    D FTY   I        +  +  +  EM   G   D+
Sbjct: 536 CKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADS 595

Query: 277 VTYNAMID 284
            T   +ID
Sbjct: 596 STIKMVID 603


>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
           SV=1
          Length = 974

 Score =  255 bits (652), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 158/520 (30%), Positives = 255/520 (49%), Gaps = 25/520 (4%)

Query: 111 CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNV 170
           CR++   +    L  + ++ +    Y+YGTV+ G+  SGDL GA  +  EM   G   NV
Sbjct: 393 CREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNV 452

Query: 171 VCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWD 230
           V Y  LI  F +   +  A  + + +  E  + P++  YN +I GL K  R DE      
Sbjct: 453 VIYTTLIKTFLQNSRFGDAMRVLKEM-KEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLV 511

Query: 231 RMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAG 290
            M +N  + ++FTY +FI G  +A     A++  +EM E G+  + V    +I+ +C+ G
Sbjct: 512 EMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKG 571

Query: 291 KIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHG 349
           K+ E    +  M  +G L +  +Y +L+ GL +N KVD+A  I+  +R K    D  ++G
Sbjct: 572 KVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYG 631

Query: 350 VLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFI 409
           VLING  K G + KA  I +E+ E                   G   N    N L+ GF 
Sbjct: 632 VLINGFSKLGNMQKASSIFDEMVE------------------EGLTPNVIIYNMLLGGFC 673

Query: 410 QASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMI 469
           ++ ++E A  L  EMS KG  P  V+Y T+I+G CK     EA+    EM  KG  PD  
Sbjct: 674 RSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSF 733

Query: 470 TYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNM 529
            Y+ L++G C+   ++ A+ +     +KG       +N LI+ +   GK E   ++ + +
Sbjct: 734 VYTTLVDGCCRLNDVERAITIFGTN-KKGCASSTAPFNALINWVFKFGKTELKTEVLNRL 792

Query: 530 KK----RNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCS 585
                 R   PN VTYN ++D L K G+ + A E+++ +    L P +I+Y   L G   
Sbjct: 793 MDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDK 852

Query: 586 CSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNGAST 625
             R ++ F   ++A+  GI P  I + +++ A +  G +T
Sbjct: 853 MGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTT 892



 Score =  222 bits (566), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 148/562 (26%), Positives = 261/562 (46%), Gaps = 57/562 (10%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
           LC+ ++ E AK  L  +   G+  D ++Y  +I+GL+K  +   A  +  EM   G+   
Sbjct: 287 LCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIK 346

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
              Y+  I    K+G   +AK +++ ++  + + P    Y  +I G C+     +  E+ 
Sbjct: 347 PYMYDCCICVMSKEGVMEKAKALFDGMI-ASGLIPQAQAYASLIEGYCREKNVRQGYELL 405

Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
             MKK       +TY + + G+C +G+++GA  + +EM+ SG   + V Y  +I  F + 
Sbjct: 406 VEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQN 465

Query: 290 GKIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348
            +  +   + + M  +G   ++  YN LI GL +  ++DEA S    + E     ++ T+
Sbjct: 466 SRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTY 525

Query: 349 GVLINGLCKNGYLNKAIQILNEVEEGG-----------------EGRLADAASLVNRMDK 391
           G  I+G  +      A + + E+ E G                 +G++ +A S    M  
Sbjct: 526 GAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVD 585

Query: 392 HGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGE 451
            G   +A T   LMNG  +  K+++A  +F+EM  KG +P V SY  LING  K+    +
Sbjct: 586 QGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQK 645

Query: 452 AYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIH 511
           A S   EM+E+G  P++I Y++L+ G C+S +I+ A +L  +   KG  P+   Y  +I 
Sbjct: 646 ASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIID 705

Query: 512 GLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDG------------------------ 547
           G C +G + +A +L+  MK +  VP+   Y TL+DG                        
Sbjct: 706 GYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASS 765

Query: 548 ----------LFKTGDCDKALEIWNHILEERL----RPDIISYNITLKGLCSCSRMSDAF 593
                     +FK G  +   E+ N +++       +P+ ++YNI +  LC    +  A 
Sbjct: 766 TAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAK 825

Query: 594 EFLNDALCRGILPTTITWHILV 615
           E  +      ++PT IT+  L+
Sbjct: 826 ELFHQMQNANLMPTVITYTSLL 847



 Score =  211 bits (537), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 141/499 (28%), Positives = 246/499 (49%), Gaps = 22/499 (4%)

Query: 119 AKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILID 178
           A +   S+  KGL P  Y+Y  +I+GL K   L  A ++  EM   GV  +   Y++LID
Sbjct: 261 ALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLID 320

Query: 179 GFFKKGDYMRAKEIWERLVME-TSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNER 237
           G  K  +   AK +   +V    ++ P +  Y+  I  + K G  ++   ++D M  +  
Sbjct: 321 GLLKGRNADAAKGLVHEMVSHGINIKPYM--YDCCICVMSKEGVMEKAKALFDGMIASGL 378

Query: 238 EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFE 297
              +  Y S I G C+  NV     +  EM +  I +   TY  ++ G C +G +   + 
Sbjct: 379 IPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYN 438

Query: 298 LWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLC 356
           + + M   GC  NVV Y  LI+  L+N +  +A+ + + ++E+    D   +  LI GL 
Sbjct: 439 IVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLS 498

Query: 357 KNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLEN 416
           K                    R+ +A S +  M ++G K NA+T  + ++G+I+AS+  +
Sbjct: 499 K------------------AKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFAS 540

Query: 417 AIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLIN 476
           A    KEM   G  P  V    LIN  CK  +  EA S  + M+++G   D  TY++L+N
Sbjct: 541 ADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMN 600

Query: 477 GLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVP 536
           GL ++ K+D A ++  +   KG  PDV  Y +LI+G    G ++ A  ++  M +    P
Sbjct: 601 GLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTP 660

Query: 537 NLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFL 596
           N++ YN L+ G  ++G+ +KA E+ + +  + L P+ ++Y   + G C    +++AF   
Sbjct: 661 NVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLF 720

Query: 597 NDALCRGILPTTITWHILV 615
           ++   +G++P +  +  LV
Sbjct: 721 DEMKLKGLVPDSFVYTTLV 739



 Score =  206 bits (524), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 143/504 (28%), Positives = 244/504 (48%), Gaps = 37/504 (7%)

Query: 78  SVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILC---------RKRQFEKAKRFLNSLWE 128
           ++I+ + +NS    A+ V + M E  G    I C         + ++ ++A+ FL  + E
Sbjct: 457 TLIKTFLQNSRFGDAMRVLKEMKEQ-GIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE 515

Query: 129 KGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMR 188
            GLKP+ ++YG  I+G +++ +   A     EM E GV  N V    LI+ + KKG  + 
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIE 575

Query: 189 AKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFI 248
           A   +  +V +  +  +  TY V++NGL K  + D+  E++  M+      D F+Y   I
Sbjct: 576 ACSAYRSMV-DQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLI 634

Query: 249 HGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC- 307
           +G  K GN++ A  ++ EMVE G+  + + YN ++ GFCR+G+I++  EL + M  KG  
Sbjct: 635 NGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLH 694

Query: 308 LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQI 367
            N V+Y  +I G  ++G + EA  +++ ++ K    DS  +  L++G C+   + +AI I
Sbjct: 695 PNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITI 754

Query: 368 LNEVEEGGEGRLADAASLVNRMDKHG-CKLNAYTCNSLMNG------------------- 407
               ++G     A   +L+N + K G  +L     N LM+G                   
Sbjct: 755 FGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDY 814

Query: 408 FIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPD 467
             +   LE A  LF +M      PTV++Y +L+NG  K+ R  E +    E +  G +PD
Sbjct: 815 LCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPD 874

Query: 468 MITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPD-----VTMYNILIHGLCSAGKVEDA 522
            I YS++IN   +      AL L  Q   K    D     ++    L+ G    G++E A
Sbjct: 875 HIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVA 934

Query: 523 LQLYSNMKKRNCVPNLVTYNTLMD 546
            ++  NM +   +P+  T   L++
Sbjct: 935 EKVMENMVRLQYIPDSATVIELIN 958



 Score =  195 bits (496), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 135/522 (25%), Positives = 232/522 (44%), Gaps = 74/522 (14%)

Query: 157 VFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVME----------------- 199
           V+  M ER V  +V  Y++LI    + G+    K++  +   E                 
Sbjct: 208 VYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKES 267

Query: 200 ---TSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGN 256
                + P   TY+V+I+GLCK  R ++   +   M       D+ TY   I GL K  N
Sbjct: 268 MICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRN 327

Query: 257 VEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-NVVSYNI 315
            + A+ +  EMV  GI +    Y+  I    + G +++   L++ M   G +    +Y  
Sbjct: 328 ADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYAS 387

Query: 316 LIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG 375
           LI G      V +   +   ++++N      T+G ++ G+C +G L+ A  I+ E     
Sbjct: 388 LIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKE----- 442

Query: 376 EGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVS 435
                        M   GC+ N     +L+  F+Q S+  +A+ + KEM  +G +P +  
Sbjct: 443 -------------MIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFC 489

Query: 436 YNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALK------ 489
           YN+LI GL K +R  EA SF+ EM+E G KP+  TY   I+G  ++ +   A K      
Sbjct: 490 YNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMR 549

Query: 490 ---------LCC--------------------QFLQKGFTPDVTMYNILIHGLCSAGKVE 520
                    LC                       + +G   D   Y +L++GL    KV+
Sbjct: 550 ECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVD 609

Query: 521 DALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITL 580
           DA +++  M+ +   P++ +Y  L++G  K G+  KA  I++ ++EE L P++I YN+ L
Sbjct: 610 DAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLL 669

Query: 581 KGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
            G C    +  A E L++   +G+ P  +T+  ++     +G
Sbjct: 670 GGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSG 711



 Score =  159 bits (402), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 196/414 (47%), Gaps = 30/414 (7%)

Query: 111 CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNV 170
           C+K +  +A     S+ ++G+  D  +Y  ++NGL K+  +  A  +F EM  +G+  +V
Sbjct: 568 CKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDV 627

Query: 171 VCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWD 230
             Y +LI+GF K G+  +A  I++ +V E  + PNV+ YN+++ G C+ G  ++  E+ D
Sbjct: 628 FSYGVLINGFSKLGNMQKASSIFDEMV-EEGLTPNVIIYNMLLGGFCRSGEIEKAKELLD 686

Query: 231 RMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAG 290
            M       ++ TYC+ I G CK+G++  A R++ EM   G+  D+  Y  ++DG CR  
Sbjct: 687 EMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLN 746

Query: 291 KIKECFELWEVMGRKGCLNVVS-YNILIRGLLENGKVDEAISIWELLREKNCN----ADS 345
            ++    ++    +KGC +  + +N LI  + + GK +    +   L + + +     + 
Sbjct: 747 DVERAITIFGT-NKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPND 805

Query: 346 TTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLM 405
            T+ ++I+ LCK                  EG L  A  L ++M          T  SL+
Sbjct: 806 VTYNIMIDYLCK------------------EGNLEAAKELFHQMQNANLMPTVITYTSLL 847

Query: 406 NGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEK--- 462
           NG+ +  +      +F E    G  P  + Y+ +IN   K     +A   V +M  K   
Sbjct: 848 NGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAV 907

Query: 463 --GWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLC 514
             G K  + T   L++G  +  ++++A K+    ++  + PD      LI+  C
Sbjct: 908 DDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESC 961



 Score = 66.2 bits (160), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 106/275 (38%), Gaps = 56/275 (20%)

Query: 404 LMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKG 463
           L +G+I    +E A+F+F         P +     L++ L +  R    +   K M+E+ 
Sbjct: 157 LFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERN 216

Query: 464 WKPDMITYSLLINGLCQSK---------------------KIDMALKLCCQFLQKGFTPD 502
              D+ TY +LI   C++                       +D ALKL    + KG  P 
Sbjct: 217 VVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPL 276

Query: 503 VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCD------- 555
              Y++LI GLC   ++EDA  L   M       +  TY+ L+DGL K  + D       
Sbjct: 277 KYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVH 336

Query: 556 ----------------------------KALEIWNHILEERLRPDIISYNITLKGLCSCS 587
                                       KA  +++ ++   L P   +Y   ++G C   
Sbjct: 337 EMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREK 396

Query: 588 RMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
            +   +E L +   R I+ +  T+  +V+ + ++G
Sbjct: 397 NVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSG 431



 Score = 50.8 bits (120), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 86/212 (40%), Gaps = 37/212 (17%)

Query: 425 SRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKI 484
           S+K     + S++ L   LC    F +A S V+ M+E+ W P    +S ++         
Sbjct: 89  SQKVTEQKLDSFSFLALDLCNFGSFEKALSVVERMIERNW-PVAEVWSSIVR-------- 139

Query: 485 DMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTL 544
                 C Q    G + D  ++ IL  G  + G +E+A+ ++S+      VP L     L
Sbjct: 140 ------CSQEFV-GKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVL 192

Query: 545 MDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMS-------------- 590
           +D L +    D   +++  ++E  +  D+ +Y++ +   C    +               
Sbjct: 193 LDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFR 252

Query: 591 -------DAFEFLNDALCRGILPTTITWHILV 615
                   A +     +C+G++P   T+ +L+
Sbjct: 253 TATLNVDGALKLKESMICKGLVPLKYTYDVLI 284


>sp|Q9C6S6|PPR67_ARATH Putative pentatricopeptide repeat-containing protein At1g31840
           OS=Arabidopsis thaliana GN=At1g31840 PE=2 SV=2
          Length = 840

 Score =  255 bits (652), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 148/509 (29%), Positives = 260/509 (51%), Gaps = 20/509 (3%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
            C++ + ++A      + ++G++PD+ +Y T+I+G  K+G L     +F +   +GV+ +
Sbjct: 296 FCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLD 355

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
           VV ++  ID + K GD   A  +++R++ +  + PNVVTY ++I GLC+ GR  E   M+
Sbjct: 356 VVVFSSTIDVYVKSGDLATASVVYKRMLCQ-GISPNVVTYTILIKGLCQDGRIYEAFGMY 414

Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
            ++ K   E    TY S I G CK GN+     +Y +M++ G   D V Y  ++DG  + 
Sbjct: 415 GQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQ 474

Query: 290 GKIKECFEL-WEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348
           G +        +++G+   LNVV +N LI G     + DEA+ ++ L+       D  T 
Sbjct: 475 GLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATF 534

Query: 349 GVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGF 408
             ++            + I+       EGRL +A  L  RM K G + +A    +L++ F
Sbjct: 535 TTVMR-----------VSIM-------EGRLEEALFLFFRMFKMGLEPDALAYCTLIDAF 576

Query: 409 IQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM 468
            +  K    + LF  M R   S  +   N +I+ L K  R  +A  F   ++E   +PD+
Sbjct: 577 CKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDI 636

Query: 469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSN 528
           +TY+ +I G C  +++D A ++        F P+     ILIH LC    ++ A++++S 
Sbjct: 637 VTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSI 696

Query: 529 MKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSR 588
           M ++   PN VTY  LMD   K+ D + + +++  + E+ + P I+SY+I + GLC   R
Sbjct: 697 MAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGR 756

Query: 589 MSDAFEFLNDALCRGILPTTITWHILVRA 617
           + +A    + A+   +LP  + + IL+R 
Sbjct: 757 VDEATNIFHQAIDAKLLPDVVAYAILIRG 785



 Score = 92.8 bits (229), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 117/255 (45%), Gaps = 45/255 (17%)

Query: 72  PEDVAL-SVIQAYGKNSMPDKALDVFQRMN------EIFGCEAGI--LCRKRQFEKAKRF 122
           P+ +A  ++I A+ K+  P   L +F  M       +I  C   I  L +  + E A +F
Sbjct: 564 PDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKF 623

Query: 123 LNSLWEKGLKPDVYSYGTVING-----------------------------------LVK 147
            N+L E  ++PD+ +Y T+I G                                   L K
Sbjct: 624 FNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCK 683

Query: 148 SGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVV 207
           + D+ GA+ +F  M E+G + N V Y  L+D F K  D   + +++E +  E  + P++V
Sbjct: 684 NNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEM-QEKGISPSIV 742

Query: 208 TYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREM 267
           +Y+++I+GLCK GR DE   ++ +    +   D   Y   I G CK G +  A  +Y  M
Sbjct: 743 SYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLYEHM 802

Query: 268 VESGIFVDAVTYNAM 282
           + +G+  D +   A+
Sbjct: 803 LRNGVKPDDLLQRAL 817



 Score = 43.9 bits (102), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 96/215 (44%), Gaps = 15/215 (6%)

Query: 419 FLFKEMSRKGCSPTVVSYNTLINGLCKVE---------RFGEAYSFVKEMLEKGWKPDMI 469
           F + E+S K  S   +++  + NG+  V            G+ ++ +  + ++    D+ 
Sbjct: 90  FRWAEISGKDPSFYTIAHVLIRNGMFDVADKVFDEMITNRGKDFNVLGSIRDRSLDADVC 149

Query: 470 TYSLLINGLCQSKKIDMALKLCCQFLQKGFT-PDVTMYNILIHGLCSAGKVEDALQLYSN 528
            +  L+   C+   +D AL++     Q G   P  ++Y +L + L  + +V+     +  
Sbjct: 150 KF--LMECCCRYGMVDKALEIFVYSTQLGVVIPQDSVYRML-NSLIGSDRVDLIADHFDK 206

Query: 529 MKKRNCVPNLVT-YNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCS 587
           + +    P+ V+ +  ++D LF  G+  KAL+    ++E   R  I+S N  LKGL S  
Sbjct: 207 LCRGGIEPSGVSAHGFVLDALFCKGEVTKALDFHRLVMERGFRVGIVSCNKVLKGL-SVD 265

Query: 588 RMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
           ++  A   L+  L  G  P  +T+  L+      G
Sbjct: 266 QIEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRG 300


>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
           mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
           SV=1
          Length = 614

 Score =  253 bits (647), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 153/506 (30%), Positives = 246/506 (48%), Gaps = 55/506 (10%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
           LCR+ Q   A   L  + + G  P + +  +++NG      +  A+A+ D+M E G + +
Sbjct: 110 LCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPD 169

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
            V +  L+ G F+      A  + ER+V++    P++VTY  +INGLCK G  D  L + 
Sbjct: 170 TVTFTTLVHGLFQHNKASEAVALVERMVVK-GCQPDLVTYGAVINGLCKRGEPDLALNLL 228

Query: 230 DRMKKNERE-----------------------------------KDSFTYCSFIHGLCKA 254
           ++M+K + E                                    D FTY S I  LC  
Sbjct: 229 NKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNY 288

Query: 255 GNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELW-EVMGRKGCLNVVSY 313
           G    A R+  +M+E  I  + VT+N++ID F + GK+ E  +L+ E++ R    N+V+Y
Sbjct: 289 GRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTY 348

Query: 314 NILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEE 373
           N LI G   + ++DEA  I+ L+  K+C  D  T+  LING CK                
Sbjct: 349 NSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCK---------------- 392

Query: 374 GGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTV 433
               ++ D   L   M + G   N  T  +L++GF QAS  +NA  +FK+M   G  P +
Sbjct: 393 --AKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNI 450

Query: 434 VSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQ 493
           ++YNTL++GLCK  +  +A    + + +   +PD+ TY+++  G+C++ K++    L C 
Sbjct: 451 MTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCS 510

Query: 494 FLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGD 553
              KG  PDV  YN +I G C  G  E+A  L+  MK+   +P+  TYNTL+    + GD
Sbjct: 511 LSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGD 570

Query: 554 CDKALEIWNHILEERLRPDIISYNIT 579
              + E+   +   R   D  +Y + 
Sbjct: 571 KAASAELIKEMRSCRFAGDASTYGLV 596



 Score =  241 bits (614), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 142/492 (28%), Positives = 247/492 (50%), Gaps = 22/492 (4%)

Query: 133 PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEI 192
           P +  +  +++ + K       ++  ++M   GV  N+  YNI+I+   ++     A  I
Sbjct: 63  PSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAI 122

Query: 193 WERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLC 252
             ++ M+    P++VT N ++NG C   R  E + + D+M +   + D+ T+ + +HGL 
Sbjct: 123 LGKM-MKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLF 181

Query: 253 KAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL--NV 310
           +      A  +   MV  G   D VTY A+I+G C+ G+      L   M  KG +  +V
Sbjct: 182 QHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKM-EKGKIEADV 240

Query: 311 VSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNE 370
           V Y+ +I  L +   VD+A++++  +  K    D  T+  LI+ LC              
Sbjct: 241 VIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCN------------- 287

Query: 371 VEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCS 430
                 GR +DA+ L++ M +     N  T NSL++ F +  KL  A  LF EM ++   
Sbjct: 288 -----YGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSID 342

Query: 431 PTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKL 490
           P +V+YN+LING C  +R  EA      M+ K   PD++TY+ LING C++KK+   ++L
Sbjct: 343 PNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMEL 402

Query: 491 CCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK 550
                ++G   +   Y  LIHG   A   ++A  ++  M      PN++TYNTL+DGL K
Sbjct: 403 FRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCK 462

Query: 551 TGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTIT 610
            G  +KA+ ++ ++ + ++ PDI +YNI  +G+C   ++ D ++       +G+ P  I 
Sbjct: 463 NGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIA 522

Query: 611 WHILVRAVMNNG 622
           ++ ++      G
Sbjct: 523 YNTMISGFCKKG 534



 Score =  237 bits (605), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 150/542 (27%), Positives = 265/542 (48%), Gaps = 28/542 (5%)

Query: 90  DKALDVFQRMNEI--------FGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTV 141
           D+A+D+F  M +         F      + + ++F+    F   +   G+  ++Y+Y  +
Sbjct: 47  DEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIM 106

Query: 142 INGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETS 201
           IN L +   L  ALA+  +M + G   ++V  N L++GF        A  + +++V E  
Sbjct: 107 INCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV-EMG 165

Query: 202 VYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAE 261
             P+ VT+  +++GL +  +  E + + +RM     + D  TY + I+GLCK G  + A 
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 225

Query: 262 RVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIRGL 320
            +  +M +  I  D V Y+ +ID  C+   + +   L+  M  KG   +V +Y+ LI  L
Sbjct: 226 NLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCL 285

Query: 321 LENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLA 380
              G+  +A  +   + E+  N +  T   LI+   K                  EG+L 
Sbjct: 286 CNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAK------------------EGKLI 327

Query: 381 DAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLI 440
           +A  L + M +     N  T NSL+NGF    +L+ A  +F  M  K C P VV+YNTLI
Sbjct: 328 EAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLI 387

Query: 441 NGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFT 500
           NG CK ++  +     ++M  +G   + +TY+ LI+G  Q+   D A  +  Q +  G  
Sbjct: 388 NGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVH 447

Query: 501 PDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEI 560
           P++  YN L+ GLC  GK+E A+ ++  ++K    P++ TYN + +G+ K G  +   ++
Sbjct: 448 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDL 507

Query: 561 WNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMN 620
           +  +  + ++PD+I+YN  + G C      +A+         G LP + T++ L+RA + 
Sbjct: 508 FCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLR 567

Query: 621 NG 622
           +G
Sbjct: 568 DG 569



 Score =  195 bits (495), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 140/518 (27%), Positives = 236/518 (45%), Gaps = 66/518 (12%)

Query: 2   VISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRIL 61
           +++   LLN          A+AL D    E GY      F  ++  L           ++
Sbjct: 135 IVTLNSLLNGFCHGNRISEAVALVDQMV-EMGYQPDTVTFTTLVHGLFQHNKASEAVALV 193

Query: 62  ELIEIQKCYCPEDVAL-SVIQAYGKNSMPDKALDVFQRMNE--------IFGCEAGILCR 112
           E + ++ C  P+ V   +VI    K   PD AL++  +M +        I+      LC+
Sbjct: 194 ERMVVKGCQ-PDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCK 252

Query: 113 KRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVC 172
            R  + A      +  KG++PDV++Y ++I+ L   G    A  +  +M ER +  NVV 
Sbjct: 253 YRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVT 312

Query: 173 YNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRM 232
           +N LID F K+G  + A+++++ ++ + S+ PN+VTYN +ING C   R DE  +++  M
Sbjct: 313 FNSLIDAFAKEGKLIEAEKLFDEMI-QRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLM 371

Query: 233 KKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKI 292
              +   D  TY + I+G CKA  V     ++R+M   G+  + VTY  +I GF +A   
Sbjct: 372 VSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDC 431

Query: 293 KECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVL 351
                +++ M   G   N+++YN L+ GL +NGK+++A+ ++E L++     D  T+ ++
Sbjct: 432 DNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIM 491

Query: 352 INGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQA 411
             G+CK G          +VE+G +                                   
Sbjct: 492 SEGMCKAG----------KVEDGWD----------------------------------- 506

Query: 412 SKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITY 471
                   LF  +S KG  P V++YNT+I+G CK     EAY+   +M E G  PD  TY
Sbjct: 507 --------LFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTY 558

Query: 472 SLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNIL 509
           + LI    +      + +L  +     F  D + Y ++
Sbjct: 559 NTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLV 596



 Score = 53.5 bits (127), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 66/143 (46%)

Query: 483 KIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYN 542
           K+D A+ L  + ++    P +  ++ L+  +    K +  +     M+      NL TYN
Sbjct: 45  KLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYN 104

Query: 543 TLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCR 602
            +++ L +      AL I   +++    P I++ N  L G C  +R+S+A   ++  +  
Sbjct: 105 IMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 164

Query: 603 GILPTTITWHILVRAVMNNGAST 625
           G  P T+T+  LV  +  +  ++
Sbjct: 165 GYQPDTVTFTTLVHGLFQHNKAS 187


>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
           mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
           SV=1
          Length = 630

 Score =  252 bits (644), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 149/494 (30%), Positives = 254/494 (51%), Gaps = 20/494 (4%)

Query: 130 GLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA 189
           G+  ++Y+Y  +IN   +   L  ALAV  +M + G E ++V  N L++GF        A
Sbjct: 111 GISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDA 170

Query: 190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIH 249
             +  ++V E    P+  T+N +I+GL +  R  E + + DRM     + D  TY   ++
Sbjct: 171 VSLVGQMV-EMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVN 229

Query: 250 GLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL- 308
           GLCK G+++ A  + ++M +  I    V YN +ID  C    + +   L+  M  KG   
Sbjct: 230 GLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRP 289

Query: 309 NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQIL 368
           NVV+YN LIR L   G+  +A  +   + E+  N +  T   LI+   K           
Sbjct: 290 NVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK----------- 338

Query: 369 NEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKG 428
                  EG+L +A  L + M K     + +T +SL+NGF    +L+ A  +F+ M  K 
Sbjct: 339 -------EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 391

Query: 429 CSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMAL 488
           C P VV+YNTLI G CK +R  E     +EM ++G   + +TY+ LI+G  Q+++ D A 
Sbjct: 392 CFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQ 451

Query: 489 KLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGL 548
            +  Q +  G  PD+  Y+IL+ GLC+ GKVE AL ++  +++    P++ TYN +++G+
Sbjct: 452 IVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGM 511

Query: 549 FKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTT 608
            K G  +   +++  +  + ++P++++Y   + G C      +A     +    G LP +
Sbjct: 512 CKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDS 571

Query: 609 ITWHILVRAVMNNG 622
            T++ L+RA + +G
Sbjct: 572 GTYNTLIRAHLRDG 585



 Score =  231 bits (589), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 141/492 (28%), Positives = 248/492 (50%), Gaps = 30/492 (6%)

Query: 79  VIQAYGKNSMPDKALDVFQRMNEIFGCEAGIL---------CRKRQFEKAKRFLNSLWEK 129
           +I  + + S    AL V  +M ++ G E  I+         C   +   A   +  + E 
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKL-GYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180

Query: 130 GLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA 189
           G +PD +++ T+I+GL +      A+A+ D M  +G + ++V Y I+++G  K+GD   A
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240

Query: 190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIH 249
             + +++  +  + P VV YN +I+ LC     ++ L ++  M       +  TY S I 
Sbjct: 241 LSLLKKM-EQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 299

Query: 250 GLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-L 308
            LC  G    A R+  +M+E  I  + VT++A+ID F + GK+ E  +L++ M ++    
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP 359

Query: 309 NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQIL 368
           ++ +Y+ LI G   + ++DEA  ++EL+  K+C  +  T+  LI G CK           
Sbjct: 360 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCK----------A 409

Query: 369 NEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKG 428
             V+EG E        L   M + G   N  T  +L++GF QA + +NA  +FK+M   G
Sbjct: 410 KRVDEGME--------LFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDG 461

Query: 429 CSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMAL 488
             P +++Y+ L++GLC   +   A    + +     +PD+ TY+++I G+C++ K++   
Sbjct: 462 VLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGW 521

Query: 489 KLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGL 548
            L C    KG  P+V  Y  ++ G C  G  E+A  L+  MK+   +P+  TYNTL+   
Sbjct: 522 DLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAH 581

Query: 549 FKTGDCDKALEI 560
            + GD   + E+
Sbjct: 582 LRDGDKAASAEL 593



 Score =  225 bits (574), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 126/447 (28%), Positives = 233/447 (52%), Gaps = 24/447 (5%)

Query: 197 VMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGN 256
           ++++  +P++V ++ +++ + K  +FD  + + ++M+      + +TY   I+  C+   
Sbjct: 72  MVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQ 131

Query: 257 VEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-NVVSYNI 315
           +  A  V  +M++ G   D VT N++++GFC   +I +   L   M   G   +  ++N 
Sbjct: 132 LSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNT 191

Query: 316 LIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEG- 374
           LI GL  + +  EA+++ + +  K C  D  T+G+++NGLCK G ++ A+ +L ++E+G 
Sbjct: 192 LIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGK 251

Query: 375 ----------------GEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAI 418
                               + DA +L   MD  G + N  T NSL+       +  +A 
Sbjct: 252 IEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDAS 311

Query: 419 FLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGL 478
            L  +M  +  +P VV+++ LI+   K  +  EA     EM+++   PD+ TYS LING 
Sbjct: 312 RLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 371

Query: 479 CQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNL 538
           C   ++D A  +    + K   P+V  YN LI G C A +V++ ++L+  M +R  V N 
Sbjct: 372 CMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNT 431

Query: 539 VTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDA---FEF 595
           VTY TL+ G F+  +CD A  ++  ++ + + PDI++Y+I L GLC+  ++  A   FE+
Sbjct: 432 VTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEY 491

Query: 596 LNDALCRGILPTTITWHILVRAVMNNG 622
           L  +    + P   T++I++  +   G
Sbjct: 492 LQRS---KMEPDIYTYNIMIEGMCKAG 515



 Score =  180 bits (456), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 123/458 (26%), Positives = 215/458 (46%), Gaps = 30/458 (6%)

Query: 31  EPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALS-VIQAYGKNSMP 89
           E GY      F+ ++  L           +++ + ++ C  P+ V    V+    K    
Sbjct: 179 EMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQ-PDLVTYGIVVNGLCKRGDI 237

Query: 90  DKALDVFQRMNE--------IFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTV 141
           D AL + ++M +        I+      LC  +    A      +  KG++P+V +Y ++
Sbjct: 238 DLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 297

Query: 142 INGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETS 201
           I  L   G    A  +  +M ER +  NVV ++ LID F K+G  + A+++++ ++ + S
Sbjct: 298 IRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI-KRS 356

Query: 202 VYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAE 261
           + P++ TY+ +ING C   R DE   M++ M   +   +  TY + I G CKA  V+   
Sbjct: 357 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGM 416

Query: 262 RVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIRGL 320
            ++REM + G+  + VTY  +I GF +A +      +++ M   G L ++++Y+IL+ GL
Sbjct: 417 ELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGL 476

Query: 321 LENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLA 380
             NGKV+ A+ ++E L+      D  T+ ++I G+CK                   G++ 
Sbjct: 477 CNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCK------------------AGKVE 518

Query: 381 DAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLI 440
           D   L   +   G K N  T  ++M+GF +    E A  LF+EM  +G  P   +YNTLI
Sbjct: 519 DGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLI 578

Query: 441 NGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGL 478
               +      +   ++EM    +  D  T  L+ N L
Sbjct: 579 RAHLRDGDKAASAELIREMRSCRFVGDASTIGLVTNML 616



 Score =  142 bits (357), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 132/245 (53%)

Query: 378 RLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYN 437
           +L DA +L   M K     +    + L++   + +K +  I L ++M   G S  + +Y+
Sbjct: 61  KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120

Query: 438 TLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQK 497
            LIN  C+  +   A + + +M++ G++PD++T + L+NG C   +I  A+ L  Q ++ 
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180

Query: 498 GFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKA 557
           G+ PD   +N LIHGL    +  +A+ L   M  + C P+LVTY  +++GL K GD D A
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240

Query: 558 LEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRA 617
           L +   + + ++ P ++ YN  +  LC+   ++DA     +   +GI P  +T++ L+R 
Sbjct: 241 LSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 300

Query: 618 VMNNG 622
           + N G
Sbjct: 301 LCNYG 305



 Score = 54.3 bits (129), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 65/143 (45%)

Query: 483 KIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYN 542
           K+D A+ L    ++    P +  ++ L+  +    K +  + L   M+      NL TY+
Sbjct: 61  KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120

Query: 543 TLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCR 602
            L++   +      AL +   +++    PDI++ N  L G C  +R+SDA   +   +  
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180

Query: 603 GILPTTITWHILVRAVMNNGAST 625
           G  P + T++ L+  +  +  ++
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRAS 203


>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
           SV=1
          Length = 644

 Score =  252 bits (643), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 147/484 (30%), Positives = 250/484 (51%), Gaps = 20/484 (4%)

Query: 133 PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEI 192
           P V  +  + + + K+      LA+  +M  +G+  ++   +I+I+ F +      A   
Sbjct: 86  PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145

Query: 193 WERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLC 252
             + +M+    P+ V +N ++NGLC   R  E LE+ DRM +   +    T  + ++GLC
Sbjct: 146 MGK-IMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLC 204

Query: 253 KAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-LNVV 311
             G V  A  +   MVE+G   + VTY  +++  C++G+     EL   M  +   L+ V
Sbjct: 205 LNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAV 264

Query: 312 SYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEV 371
            Y+I+I GL ++G +D A +++  +  K   AD  T+  LI G C               
Sbjct: 265 KYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFC--------------- 309

Query: 372 EEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSP 431
                GR  D A L+  M K     N  T + L++ F++  KL  A  L KEM ++G +P
Sbjct: 310 ---NAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAP 366

Query: 432 TVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLC 491
             ++YN+LI+G CK  R  EA   V  M+ KG  PD++T+++LING C++ +ID  L+L 
Sbjct: 367 NTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELF 426

Query: 492 CQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKT 551
            +   +G   +   YN L+ G C +GK+E A +L+  M  R   P++V+Y  L+DGL   
Sbjct: 427 REMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDN 486

Query: 552 GDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITW 611
           G+ +KALEI+  I + ++  DI  Y I + G+C+ S++ DA++       +G+      +
Sbjct: 487 GELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAY 546

Query: 612 HILV 615
           +I++
Sbjct: 547 NIMI 550



 Score =  252 bits (643), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 147/514 (28%), Positives = 273/514 (53%), Gaps = 21/514 (4%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
            CR R+   A   +  + + G +PD   + T++NGL     +  AL + D M E G +  
Sbjct: 133 FCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPT 192

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
           ++  N L++G    G    A  + +R+V ET   PN VTY  ++N +CK G+    +E+ 
Sbjct: 193 LITLNTLVNGLCLNGKVSDAVVLIDRMV-ETGFQPNEVTYGPVLNVMCKSGQTALAMELL 251

Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
            +M++   + D+  Y   I GLCK G+++ A  ++ EM   G   D +TYN +I GFC A
Sbjct: 252 RKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNA 311

Query: 290 GKIKECFELW-EVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348
           G+  +  +L  +++ RK   NVV++++LI   ++ GK+ EA  + + + ++    ++ T+
Sbjct: 312 GRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITY 371

Query: 349 GVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGF 408
             LI+G CK                  E RL +A  +V+ M   GC  +  T N L+NG+
Sbjct: 372 NSLIDGFCK------------------ENRLEEAIQMVDLMISKGCDPDIMTFNILINGY 413

Query: 409 IQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM 468
            +A+++++ + LF+EMS +G     V+YNTL+ G C+  +   A    +EM+ +  +PD+
Sbjct: 414 CKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDI 473

Query: 469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSN 528
           ++Y +L++GLC + +++ AL++  +  +     D+ +Y I+IHG+C+A KV+DA  L+ +
Sbjct: 474 VSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCS 533

Query: 529 MKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSR 588
           +  +    +   YN ++  L +     KA  ++  + EE   PD ++YNI ++       
Sbjct: 534 LPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDD 593

Query: 589 MSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
            + A E + +    G  P  ++   +V  ++++G
Sbjct: 594 ATTAAELIEEMKSSG-FPADVSTVKMVINMLSSG 626



 Score =  249 bits (635), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 153/549 (27%), Positives = 272/549 (49%), Gaps = 36/549 (6%)

Query: 90  DKALDVFQRM------------NEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYS 137
           D A+D+F+ M            N +F      + + +Q+E        +  KG+   +Y+
Sbjct: 70  DDAVDLFRDMIQSRPLPTVIDFNRLFSA----IAKTKQYELVLALCKQMESKGIAHSIYT 125

Query: 138 YGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLV 197
              +IN   +   L  A +   ++ + G E + V +N L++G   +     A E+ +R+V
Sbjct: 126 LSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMV 185

Query: 198 METSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNV 257
            E    P ++T N ++NGLC  G+  + + + DRM +   + +  TY   ++ +CK+G  
Sbjct: 186 -EMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQT 244

Query: 258 EGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-LNVVSYNIL 316
             A  + R+M E  I +DAV Y+ +IDG C+ G +   F L+  M  KG   ++++YN L
Sbjct: 245 ALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTL 304

Query: 317 IRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGE 376
           I G    G+ D+   +   + ++  + +  T  VLI+   K G L +A Q+L E      
Sbjct: 305 IGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKE------ 358

Query: 377 GRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSY 436
                       M + G   N  T NSL++GF + ++LE AI +   M  KGC P ++++
Sbjct: 359 ------------MMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTF 406

Query: 437 NTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQ 496
           N LING CK  R  +     +EM  +G   + +TY+ L+ G CQS K+++A KL  + + 
Sbjct: 407 NILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVS 466

Query: 497 KGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDK 556
           +   PD+  Y IL+ GLC  G++E AL+++  ++K     ++  Y  ++ G+      D 
Sbjct: 467 RRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDD 526

Query: 557 ALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVR 616
           A +++  +  + ++ D  +YNI +  LC    +S A          G  P  +T++IL+R
Sbjct: 527 AWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIR 586

Query: 617 AVMNNGAST 625
           A + +  +T
Sbjct: 587 AHLGDDDAT 595



 Score =  205 bits (522), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 139/510 (27%), Positives = 253/510 (49%), Gaps = 34/510 (6%)

Query: 33  GYAHSPHLFHHILRRLIDPKLVVHVSRILELIE--IQKCYCPEDVAL-SVIQAYGKNSMP 89
           GY     +F+ +L  L    L   VS  LEL++  ++  + P  + L +++     N   
Sbjct: 153 GYEPDTVIFNTLLNGLC---LECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKV 209

Query: 90  DKALDVFQRM-------NEI-FGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTV 141
             A+ +  RM       NE+ +G    ++C+  Q   A   L  + E+ +K D   Y  +
Sbjct: 210 SDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSII 269

Query: 142 INGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETS 201
           I+GL K G L  A  +F+EM  +G + +++ YN LI GF   G +    ++  R +++  
Sbjct: 270 IDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLL-RDMIKRK 328

Query: 202 VYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAE 261
           + PNVVT++V+I+   K G+  E  ++   M +     ++ TY S I G CK   +E A 
Sbjct: 329 ISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAI 388

Query: 262 RVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIRGL 320
           ++   M+  G   D +T+N +I+G+C+A +I +  EL+  M  +G + N V+YN L++G 
Sbjct: 389 QMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGF 448

Query: 321 LENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLA 380
            ++GK++ A  +++ +  +    D  ++ +L++GLC NG L KA++I  ++E        
Sbjct: 449 CQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIE-------- 500

Query: 381 DAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLI 440
                     K   +L+      +++G   ASK+++A  LF  +  KG      +YN +I
Sbjct: 501 ----------KSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMI 550

Query: 441 NGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFT 500
           + LC+ +   +A    ++M E+G  PD +TY++LI           A +L  +    GF 
Sbjct: 551 SELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFP 610

Query: 501 PDVTMYNILIHGLCSAGKVEDALQLYSNMK 530
            DV+   ++I+ L S    +  L + S  +
Sbjct: 611 ADVSTVKMVINMLSSGELDKSFLDMLSTTR 640



 Score =  110 bits (274), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 112/211 (53%)

Query: 413 KLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYS 472
           K ++A+ LF++M +    PTV+ +N L + + K +++    +  K+M  KG    + T S
Sbjct: 68  KADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLS 127

Query: 473 LLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKR 532
           ++IN  C+ +K+  A     + ++ G+ PD  ++N L++GLC   +V +AL+L   M + 
Sbjct: 128 IMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEM 187

Query: 533 NCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDA 592
              P L+T NTL++GL   G    A+ + + ++E   +P+ ++Y   L  +C   + + A
Sbjct: 188 GHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALA 247

Query: 593 FEFLNDALCRGILPTTITWHILVRAVMNNGA 623
            E L     R I    + + I++  +  +G+
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKDGS 278


>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
           OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
          Length = 871

 Score =  252 bits (643), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 171/659 (25%), Positives = 310/659 (47%), Gaps = 69/659 (10%)

Query: 8   LLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQ 67
           L+    A  +    L LF    +E GY  + HLF  ++R       V     +L+  E++
Sbjct: 174 LIGAFSAVNHSDMMLTLFQQ-MQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLD--EMK 230

Query: 68  KCYCPEDVALS--VIQAYGKNSMPDKALDVFQRMNE--------IFGCEAGILCRKR--- 114
                 D+ L    I ++GK    D A   F  +           +    G+LC+     
Sbjct: 231 SSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLD 290

Query: 115 --------------------------------QFEKAKRFLNSLWEKGLKPDVYSYGTVI 142
                                           +F++A   L     KG  P V +Y  ++
Sbjct: 291 EAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCIL 350

Query: 143 NGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSV 202
             L K G +  AL VF+EM ++    N+  YNILID   + G    A E+ + +  +  +
Sbjct: 351 TCLRKMGKVDEALKVFEEM-KKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSM-QKAGL 408

Query: 203 YPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAER 262
           +PNV T N+M++ LCK  + DE   M++ M       D  T+CS I GL K G V+ A +
Sbjct: 409 FPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYK 468

Query: 263 VYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-LNVVSYNILIRGLL 321
           VY +M++S    +++ Y ++I  F   G+ ++  ++++ M  + C  ++   N  +  + 
Sbjct: 469 VYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMF 528

Query: 322 ENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLAD 381
           + G+ ++  +++E ++ +    D+ ++ +LI+GL K G+ N+  ++   ++E        
Sbjct: 529 KAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKE-------- 580

Query: 382 AASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLIN 441
                      GC L+    N +++GF +  K+  A  L +EM  KG  PTVV+Y ++I+
Sbjct: 581 ----------QGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVID 630

Query: 442 GLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTP 501
           GL K++R  EAY   +E   K  + +++ YS LI+G  +  +ID A  +  + +QKG TP
Sbjct: 631 GLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTP 690

Query: 502 DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIW 561
           ++  +N L+  L  A ++ +AL  + +MK+  C PN VTY  L++GL K    +KA   W
Sbjct: 691 NLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFW 750

Query: 562 NHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMN 620
             + ++ ++P  ISY   + GL     +++A    +     G +P +  ++ ++  + N
Sbjct: 751 QEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSN 809



 Score =  233 bits (595), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 159/589 (26%), Positives = 271/589 (46%), Gaps = 90/589 (15%)

Query: 122 FLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFF 181
               + E G +P V+ + T+I G  K G +  AL++ DEM    ++ ++V YN+ ID F 
Sbjct: 190 LFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFG 249

Query: 182 KKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDS 241
           K G    A + +   +    + P+ VTY  MI  LCK  R DE +EM++ ++KN R   +
Sbjct: 250 KVGKVDMAWKFFHE-IEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCT 308

Query: 242 FTYCSFIHG-----------------------------------LCKAGNVEGAERVYRE 266
           + Y + I G                                   L K G V+ A +V+ E
Sbjct: 309 YAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEE 368

Query: 267 MVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGK 325
           M +     +  TYN +ID  CRAGK+   FEL + M + G   NV + NI++  L ++ K
Sbjct: 369 MKKDAA-PNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQK 427

Query: 326 VDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEG----------- 374
           +DEA +++E +  K C  D  T   LI+GL K G ++ A ++  ++ +            
Sbjct: 428 LDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTS 487

Query: 375 ------GEGRLADAASLVNRMDKHGCK-----LNAY------------------------ 399
                   GR  D   +   M    C      LN Y                        
Sbjct: 488 LIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARR 547

Query: 400 ------TCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAY 453
                 + + L++G I+A        LF  M  +GC     +YN +I+G CK  +  +AY
Sbjct: 548 FVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAY 607

Query: 454 SFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGL 513
             ++EM  KG++P ++TY  +I+GL +  ++D A  L  +   K    +V +Y+ LI G 
Sbjct: 608 QLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGF 667

Query: 514 CSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI 573
              G++++A  +   + ++   PNL T+N+L+D L K  + ++AL  +  + E +  P+ 
Sbjct: 668 GKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQ 727

Query: 574 ISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
           ++Y I + GLC   + + AF F  +   +G+ P+TI++  ++  +   G
Sbjct: 728 VTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAG 776



 Score =  222 bits (565), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 138/459 (30%), Positives = 232/459 (50%), Gaps = 21/459 (4%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
           LC+ ++ ++A      +  K   PD  ++ ++I+GL K G +  A  V+++M +    TN
Sbjct: 422 LCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTN 481

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
            + Y  LI  FF  G      +I++ ++ + +  P++   N  ++ + K G  ++   M+
Sbjct: 482 SIVYTSLIKNFFNHGRKEDGHKIYKDMINQ-NCSPDLQLLNTYMDCMFKAGEPEKGRAMF 540

Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
           + +K      D+ +Y   IHGL KAG       ++  M E G  +D   YN +IDGFC+ 
Sbjct: 541 EEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKC 600

Query: 290 GKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348
           GK+ + ++L E M  KG    VV+Y  +I GL +  ++DEA  ++E  + K    +   +
Sbjct: 601 GKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIY 660

Query: 349 GVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGF 408
             LI+G  K G +++A  IL E+ +                   G   N YT NSL++  
Sbjct: 661 SSLIDGFGKVGRIDEAYLILEELMQ------------------KGLTPNLYTWNSLLDAL 702

Query: 409 IQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM 468
           ++A ++  A+  F+ M    C+P  V+Y  LINGLCKV +F +A+ F +EM ++G KP  
Sbjct: 703 VKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPST 762

Query: 469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSN 528
           I+Y+ +I+GL ++  I  A  L  +F   G  PD   YN +I GL +  +  DA  L+  
Sbjct: 763 ISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEE 822

Query: 529 MKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEE 567
            ++R    +  T   L+D L K  DC +   I   +L E
Sbjct: 823 TRRRGLPIHNKTCVVLLDTLHKN-DCLEQAAIVGAVLRE 860



 Score =  209 bits (532), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 146/558 (26%), Positives = 264/558 (47%), Gaps = 62/558 (11%)

Query: 96  FQRMNEIFGCEAG------ILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSG 149
           ++R  E+  C         ++ R R F+   + L  +   G  P V +   ++ G VK+ 
Sbjct: 88  YERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKAN 147

Query: 150 D-------------------------LLGA----------LAVFDEMFERGVETNVVCYN 174
                                     L+GA          L +F +M E G E  V  + 
Sbjct: 148 KLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFT 207

Query: 175 ILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKK 234
            LI GF K+G    A  + + +   +S+  ++V YNV I+   K G+ D   + +  ++ 
Sbjct: 208 TLIRGFAKEGRVDSALSLLDEM-KSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEA 266

Query: 235 NEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKE 294
           N  + D  TY S I  LCKA  ++ A  ++  + ++        YN MI G+  AGK  E
Sbjct: 267 NGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDE 326

Query: 295 CFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLIN 353
            + L E    KG + +V++YN ++  L + GKVDEA+ ++E ++ K+   + +T+ +LI+
Sbjct: 327 AYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMK-KDAAPNLSTYNILID 385

Query: 354 GLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASK 413
            LC+ G L+ A +                  L + M K G   N  T N +++   ++ K
Sbjct: 386 MLCRAGKLDTAFE------------------LRDSMQKAGLFPNVRTVNIMVDRLCKSQK 427

Query: 414 LENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSL 473
           L+ A  +F+EM  K C+P  +++ +LI+GL KV R  +AY   ++ML+   + + I Y+ 
Sbjct: 428 LDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTS 487

Query: 474 LINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRN 533
           LI       + +   K+    + +  +PD+ + N  +  +  AG+ E    ++  +K R 
Sbjct: 488 LIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARR 547

Query: 534 CVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAF 593
            VP+  +Y+ L+ GL K G  ++  E++  + E+    D  +YNI + G C C +++ A+
Sbjct: 548 FVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAY 607

Query: 594 EFLNDALCRGILPTTITW 611
           + L +   +G  PT +T+
Sbjct: 608 QLLEEMKTKGFEPTVVTY 625



 Score =  102 bits (254), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 151/354 (42%), Gaps = 59/354 (16%)

Query: 316 LIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG 375
           ++R L +  +  E    +E   E     +S    +L+   C+N   +   QIL E+   G
Sbjct: 71  VLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRN--FDALDQILGEMSVAG 128

Query: 376 EG-----------------RLADAASLVNRMDKHGCK--LNAYTCNSLMNGFIQASKLEN 416
            G                 +L +   +V  M K   +   +AYT  +L+  F   +  + 
Sbjct: 129 FGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYT--TLIGAFSAVNHSDM 186

Query: 417 AIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLIN 476
            + LF++M   G  PTV  + TLI G  K  R   A S + EM       D++ Y++ I+
Sbjct: 187 MLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCID 246

Query: 477 GLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKK----- 531
              +  K+DMA K   +    G  PD   Y  +I  LC A ++++A++++ +++K     
Sbjct: 247 SFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVP 306

Query: 532 ------------------------------RNCVPNLVTYNTLMDGLFKTGDCDKALEIW 561
                                         +  +P+++ YN ++  L K G  D+AL+++
Sbjct: 307 CTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVF 366

Query: 562 NHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILV 615
              +++   P++ +YNI +  LC   ++  AFE  +     G+ P   T +I+V
Sbjct: 367 EE-MKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMV 419



 Score =  102 bits (253), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 111/239 (46%)

Query: 384 SLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGL 443
            ++  M   G   +  TC  ++ G ++A+KL     + + M +    P   +Y TLI   
Sbjct: 119 QILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAF 178

Query: 444 CKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDV 503
             V       +  ++M E G++P +  ++ LI G  +  ++D AL L  +        D+
Sbjct: 179 SAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADI 238

Query: 504 TMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNH 563
            +YN+ I      GKV+ A + +  ++     P+ VTY +++  L K    D+A+E++ H
Sbjct: 239 VLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEH 298

Query: 564 ILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
           + + R  P   +YN  + G  S  +  +A+  L     +G +P+ I ++ ++  +   G
Sbjct: 299 LEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMG 357


>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
           SV=1
          Length = 816

 Score =  251 bits (642), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 154/514 (29%), Positives = 254/514 (49%), Gaps = 20/514 (3%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
           L + +QF        ++ E   +P  + YG  I   VK  D+   L +F+ M    +  +
Sbjct: 154 LVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPS 213

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
           V  YN+LIDG  K      A+++++ + +   + P+++TYN +I+G CK G  ++  ++ 
Sbjct: 214 VFIYNVLIDGLCKGKRMNDAEQLFDEM-LARRLLPSLITYNTLIDGYCKAGNPEKSFKVR 272

Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
           +RMK +  E    T+ + + GL KAG VE AE V +EM + G   DA T++ + DG+   
Sbjct: 273 ERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSN 332

Query: 290 GKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348
            K +    ++E     G  +N  + +IL+  L + GK+++A  I      K    +   +
Sbjct: 333 EKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIY 392

Query: 349 GVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGF 408
             +I+G C+                  +G L  A   +  M+K G K +    N L+  F
Sbjct: 393 NTMIDGYCR------------------KGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRF 434

Query: 409 IQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM 468
            +  ++ENA     +M  KG SP+V +YN LI G  +   F + +  +KEM + G  P++
Sbjct: 435 CELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNV 494

Query: 469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSN 528
           ++Y  LIN LC+  K+  A  +      +G +P V +YN+LI G CS GK+EDA +    
Sbjct: 495 VSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKE 554

Query: 529 MKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSR 588
           M K+    NLVTYNTL+DGL  TG   +A ++   I  + L+PD+ +YN  + G      
Sbjct: 555 MLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGN 614

Query: 589 MSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
           +        +    GI PT  T+H+L+      G
Sbjct: 615 VQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEG 648



 Score =  207 bits (526), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 155/578 (26%), Positives = 257/578 (44%), Gaps = 52/578 (8%)

Query: 37  SPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVF 96
           +  LF  +L R + P L+ + +                    +I  Y K   P+K+  V 
Sbjct: 233 AEQLFDEMLARRLLPSLITYNT--------------------LIDGYCKAGNPEKSFKVR 272

Query: 97  QRMNE--------IFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKS 148
           +RM           F      L +    E A+  L  + + G  PD +++  + +G   +
Sbjct: 273 ERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSN 332

Query: 149 GDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVT 208
                AL V++   + GV+ N    +IL++   K+G   +A+EI  R  M   + PN V 
Sbjct: 333 EKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGR-EMAKGLVPNEVI 391

Query: 209 YNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMV 268
           YN MI+G C+ G         + M+K   + D   Y   I   C+ G +E AE+   +M 
Sbjct: 392 YNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMK 451

Query: 269 ESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVD 327
             G+     TYN +I G+ R  +  +CF++ + M   G + NVVSY  LI  L +  K+ 
Sbjct: 452 LKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLL 511

Query: 328 EAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVN 387
           EA  +   + ++  +     + +LI+G C                   +G++ DA     
Sbjct: 512 EAQIVKRDMEDRGVSPKVRIYNMLIDGCC------------------SKGKIEDAFRFSK 553

Query: 388 RMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVE 447
            M K G +LN  T N+L++G     KL  A  L  E+SRKG  P V +YN+LI+G     
Sbjct: 554 EMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAG 613

Query: 448 RFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYN 507
                 +  +EM   G KP + TY LLI+ LC  + I++  +L   F +    PD+ +YN
Sbjct: 614 NVQRCIALYEEMKRSGIKPTLKTYHLLIS-LCTKEGIELTERL---FGEMSLKPDLLVYN 669

Query: 508 ILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEE 567
            ++H     G +E A  L   M +++   +  TYN+L+ G  K G   +   + + +   
Sbjct: 670 GVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAR 729

Query: 568 RLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGIL 605
            + P+  +YNI +KG C       A+ +  +   +G L
Sbjct: 730 EMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGFL 767



 Score =  185 bits (470), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 145/516 (28%), Positives = 251/516 (48%), Gaps = 27/516 (5%)

Query: 41  FHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVI-QAYGKNSMPDKALDVFQ-- 97
           F+ +L+ L    +V     +L+ ++    + P+    S++   Y  N   + AL V++  
Sbjct: 287 FNTLLKGLFKAGMVEDAENVLKEMK-DLGFVPDAFTFSILFDGYSSNEKAEAALGVYETA 345

Query: 98  -----RMNEIFGCEA--GILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGD 150
                +MN  + C      LC++ + EKA+  L     KGL P+   Y T+I+G  + GD
Sbjct: 346 VDSGVKMN-AYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGD 404

Query: 151 LLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYN 210
           L+GA    + M ++G++ + + YN LI  F + G+   A++   ++ ++  V P+V TYN
Sbjct: 405 LVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLK-GVSPSVETYN 463

Query: 211 VMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVES 270
           ++I G  +   FD+C ++   M+ N    +  +Y + I+ LCK   +  A+ V R+M + 
Sbjct: 464 ILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDR 523

Query: 271 GIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEA 329
           G+      YN +IDG C  GKI++ F   + M +KG  LN+V+YN LI GL   GK+ EA
Sbjct: 524 GVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEA 583

Query: 330 ISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG-EGRLADAASLVNR 388
             +   +  K    D  T+  LI+G    G + + I +  E++  G +  L     L++ 
Sbjct: 584 EDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISL 643

Query: 389 MDKHGCKL------------NAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSY 436
             K G +L            +    N +++ +     +E A  L K+M  K       +Y
Sbjct: 644 CTKEGIELTERLFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTY 703

Query: 437 NTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQ 496
           N+LI G  KV +  E  S + EM  +  +P+  TY++++ G C+ K    A     +  +
Sbjct: 704 NSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQE 763

Query: 497 KGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKR 532
           KGF  DV + N L+ GL    + ++A  + S M  R
Sbjct: 764 KGFLLDVCIGNELVSGLKEEWRSKEAEIVISEMNGR 799



 Score = 80.1 bits (196), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 3/196 (1%)

Query: 430 SPTV---VSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDM 486
           SP++    SY  L   L + +   EA      +  +G  P   + +LL++ L ++K+  +
Sbjct: 103 SPSLKHDFSYLLLSVLLNESKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRV 162

Query: 487 ALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMD 546
            + +    L+  F P   MY   I        V   L+L++ MK     P++  YN L+D
Sbjct: 163 TINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLID 222

Query: 547 GLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILP 606
           GL K    + A ++++ +L  RL P +I+YN  + G C       +F+         I P
Sbjct: 223 GLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEP 282

Query: 607 TTITWHILVRAVMNNG 622
           + IT++ L++ +   G
Sbjct: 283 SLITFNTLLKGLFKAG 298


>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
           OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
          Length = 743

 Score =  248 bits (634), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 163/548 (29%), Positives = 270/548 (49%), Gaps = 52/548 (9%)

Query: 74  DVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKP 133
           D+ALS   AY     P  AL +FQ+M  +                            LKP
Sbjct: 135 DIALS---AYLHEGKPHVALQIFQKMIRL---------------------------KLKP 164

Query: 134 DVYSYGTVINGLVK---SGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAK 190
           ++ +  T++ GLV+   S  +  A  VFD+M + GV  NV  +N+L++G+  +G    A 
Sbjct: 165 NLLTCNTLLIGLVRYPSSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDAL 224

Query: 191 EIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHG 250
            + ER+V E  V P+ VTYN ++  + K GR  +  E+   MKKN    +  TY + ++G
Sbjct: 225 GMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYG 284

Query: 251 LCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGR-KGCLN 309
            CK G+++ A ++   M ++ +  D  TYN +I+G C AG ++E  EL + M   K   +
Sbjct: 285 YCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPD 344

Query: 310 VVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILN 369
           VV+YN LI G  E G   EA  + E +      A+  TH + +  LCK            
Sbjct: 345 VVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCK------------ 392

Query: 370 EVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGC 429
             EE  E        LV   D HG   +  T ++L+  +++   L  A+ + +EM +KG 
Sbjct: 393 --EEKREAVTRKVKELV---DMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGI 447

Query: 430 SPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALK 489
               ++ NT+++ LCK  +  EA++ +    ++G+  D +TY  LI G  + +K++ AL+
Sbjct: 448 KMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALE 507

Query: 490 LCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLF 549
           +  +  +   TP V+ +N LI GLC  GK E A++ +  + +   +P+  T+N+++ G  
Sbjct: 508 MWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYC 567

Query: 550 KTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTI 609
           K G  +KA E +N  ++   +PD  + NI L GLC       A  F N  L       T+
Sbjct: 568 KEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFN-TLIEEREVDTV 626

Query: 610 TWHILVRA 617
           T++ ++ A
Sbjct: 627 TYNTMISA 634



 Score =  216 bits (550), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 144/511 (28%), Positives = 249/511 (48%), Gaps = 29/511 (5%)

Query: 124 NSLWEKGL----KPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDG 179
           NSL    L     P    +   ++  +  G    AL +F +M    ++ N++  N L+ G
Sbjct: 116 NSLLHPNLHLSPPPSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIG 175

Query: 180 FFKKGDYMR---AKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNE 236
             +         A+E+++ +V +  V  NV T+NV++NG C  G+ ++ L M +RM    
Sbjct: 176 LVRYPSSFSISSAREVFDDMV-KIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEF 234

Query: 237 R-EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKEC 295
           +   D+ TY + +  + K G +   + +  +M ++G+  + VTYN ++ G+C+ G +KE 
Sbjct: 235 KVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEA 294

Query: 296 FELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLING 354
           F++ E+M +   L ++ +YNILI GL   G + E + + + ++      D  T+  LI+G
Sbjct: 295 FQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDG 354

Query: 355 LCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKL 414
             + G                     +A  L+ +M+  G K N  T N  +    +  K 
Sbjct: 355 CFELGLS------------------LEARKLMEQMENDGVKANQVTHNISLKWLCKEEKR 396

Query: 415 ENAIFLFKEM-SRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSL 473
           E      KE+    G SP +V+Y+TLI    KV     A   ++EM +KG K + IT + 
Sbjct: 397 EAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNT 456

Query: 474 LINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRN 533
           +++ LC+ +K+D A  L     ++GF  D   Y  LI G     KVE AL+++  MKK  
Sbjct: 457 ILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVK 516

Query: 534 CVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAF 593
             P + T+N+L+ GL   G  + A+E ++ + E  L PD  ++N  + G C   R+  AF
Sbjct: 517 ITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAF 576

Query: 594 EFLNDALCRGILPTTITWHILVRAVMNNGAS 624
           EF N+++     P   T +IL+  +   G +
Sbjct: 577 EFYNESIKHSFKPDNYTCNILLNGLCKEGMT 607



 Score =  184 bits (468), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 121/407 (29%), Positives = 202/407 (49%), Gaps = 29/407 (7%)

Query: 111 CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNV 170
           C+    ++A + +  + +  + PD+ +Y  +INGL  +G +   L + D M    ++ +V
Sbjct: 286 CKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDV 345

Query: 171 VCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWD 230
           V YN LIDG F+ G  + A+++ E++  +  V  N VT+N+ +  LCK    +E  E   
Sbjct: 346 VTYNTLIDGCFELGLSLEARKLMEQMEND-GVKANQVTHNISLKWLCK----EEKREAVT 400

Query: 231 RMKKNEREKDSF-----TYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDG 285
           R  K   +   F     TY + I    K G++ GA  + REM + GI ++ +T N ++D 
Sbjct: 401 RKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDA 460

Query: 286 FCRAGKIKECFELWEVMGRKG-CLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNAD 344
            C+  K+ E   L     ++G  ++ V+Y  LI G     KV++A+ +W+ +++      
Sbjct: 461 LCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPT 520

Query: 345 STTHGVLINGLCKNGYLNKAIQILNEVEEGG-----------------EGRLADAASLVN 387
            +T   LI GLC +G    A++  +E+ E G                 EGR+  A    N
Sbjct: 521 VSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYN 580

Query: 388 RMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVE 447
              KH  K + YTCN L+NG  +    E A+  F  +  +    T V+YNT+I+  CK +
Sbjct: 581 ESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREVDT-VTYNTMISAFCKDK 639

Query: 448 RFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQF 494
           +  EAY  + EM EKG +PD  TY+  I+ L +  K+    +L  +F
Sbjct: 640 KLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELLKKF 686



 Score =  128 bits (322), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 145/281 (51%), Gaps = 13/281 (4%)

Query: 59  RILELIEIQKCYCPEDVAL-SVIQAYGKNSMPDKALDVFQRMNE--------IFGCEAGI 109
           ++ EL+++   + P+ V   ++I+AY K      AL++ + M +                
Sbjct: 402 KVKELVDMH-GFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDA 460

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
           LC++R+ ++A   LNS  ++G   D  +YGT+I G  +   +  AL ++DEM +  +   
Sbjct: 461 LCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPT 520

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
           V  +N LI G    G    A E ++ L  E+ + P+  T+N +I G CK GR ++  E +
Sbjct: 521 VSTFNSLIGGLCHHGKTELAMEKFDELA-ESGLLPDDSTFNSIILGYCKEGRVEKAFEFY 579

Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
           +   K+  + D++T    ++GLCK G  E A   +  ++E    VD VTYN MI  FC+ 
Sbjct: 580 NESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEER-EVDTVTYNTMISAFCKD 638

Query: 290 GKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEA 329
            K+KE ++L   M  KG   +  +YN  I  L+E+GK+ E 
Sbjct: 639 KKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSET 679


>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
           OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
          Length = 621

 Score =  248 bits (633), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 143/473 (30%), Positives = 260/473 (54%), Gaps = 20/473 (4%)

Query: 111 CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNV 170
           CR R+   A   +  + + G +PD  ++ T+INGL   G +  AL + D M E G +  +
Sbjct: 118 CRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTL 177

Query: 171 VCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWD 230
           +  N L++G    G    A  + +R+V ET   PN VTY  ++  +CK G+    +E+  
Sbjct: 178 ITLNALVNGLCLNGKVSDAVLLIDRMV-ETGFQPNEVTYGPVLKVMCKSGQTALAMELLR 236

Query: 231 RMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAG 290
           +M++ + + D+  Y   I GLCK G+++ A  ++ EM   G   D + Y  +I GFC AG
Sbjct: 237 KMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAG 296

Query: 291 KIKECFELW-EVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHG 349
           +  +  +L  +++ RK   +VV+++ LI   ++ GK+ EA  + + + ++  + D+ T+ 
Sbjct: 297 RWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYT 356

Query: 350 VLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFI 409
            LI+G CK   L+KA  +L+                   M   GC  N  T N L+NG+ 
Sbjct: 357 SLIDGFCKENQLDKANHMLD------------------LMVSKGCGPNIRTFNILINGYC 398

Query: 410 QASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMI 469
           +A+ +++ + LF++MS +G     V+YNTLI G C++ +   A    +EM+ +  +PD++
Sbjct: 399 KANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIV 458

Query: 470 TYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNM 529
           +Y +L++GLC + + + AL++  +  +     D+ +YNI+IHG+C+A KV+DA  L+ ++
Sbjct: 459 SYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSL 518

Query: 530 KKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKG 582
             +   P++ TYN ++ GL K G   +A  ++  + E+   P+  +YNI ++ 
Sbjct: 519 PLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRA 571



 Score =  241 bits (615), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 157/543 (28%), Positives = 259/543 (47%), Gaps = 63/543 (11%)

Query: 90  DKALDVFQRMNEI--------FGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTV 141
           D A+D+FQ M           F     ++ R +Q++        +  KG+  ++Y+   +
Sbjct: 54  DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIM 113

Query: 142 INGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETS 201
           IN   +   L  A +   ++ + G E                                  
Sbjct: 114 INCCCRCRKLSLAFSAMGKIIKLGYE---------------------------------- 139

Query: 202 VYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAE 261
             P+ VT++ +INGLC  GR  E LE+ DRM +   +    T  + ++GLC  G V  A 
Sbjct: 140 --PDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAV 197

Query: 262 RVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMG-RKGCLNVVSYNILIRGL 320
            +   MVE+G   + VTY  ++   C++G+     EL   M  RK  L+ V Y+I+I GL
Sbjct: 198 LLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGL 257

Query: 321 LENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLA 380
            ++G +D A +++  +  K   AD   +  LI G C                    GR  
Sbjct: 258 CKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCY------------------AGRWD 299

Query: 381 DAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLI 440
           D A L+  M K     +    ++L++ F++  KL  A  L KEM ++G SP  V+Y +LI
Sbjct: 300 DGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLI 359

Query: 441 NGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFT 500
           +G CK  +  +A   +  M+ KG  P++ T+++LING C++  ID  L+L  +   +G  
Sbjct: 360 DGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVV 419

Query: 501 PDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEI 560
            D   YN LI G C  GK+E A +L+  M  R   P++V+Y  L+DGL   G+ +KALEI
Sbjct: 420 ADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEI 479

Query: 561 WNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMN 620
           +  I + ++  DI  YNI + G+C+ S++ DA++       +G+ P   T++I++  +  
Sbjct: 480 FEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCK 539

Query: 621 NGA 623
            G+
Sbjct: 540 KGS 542



 Score =  189 bits (480), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 132/480 (27%), Positives = 236/480 (49%), Gaps = 32/480 (6%)

Query: 56  HVSRILELIE--IQKCYCPEDVAL-SVIQAYGKNSMPDKALDVFQRM-------NEI-FG 104
            VS  LEL++  ++  + P  + L +++     N     A+ +  RM       NE+ +G
Sbjct: 157 RVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYG 216

Query: 105 CEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER 164
               ++C+  Q   A   L  + E+ +K D   Y  +I+GL K G L  A  +F+EM  +
Sbjct: 217 PVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIK 276

Query: 165 GVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDE 224
           G + +++ Y  LI GF   G +    ++  R +++  + P+VV ++ +I+   K G+  E
Sbjct: 277 GFKADIIIYTTLIRGFCYAGRWDDGAKLL-RDMIKRKITPDVVAFSALIDCFVKEGKLRE 335

Query: 225 CLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMID 284
             E+   M +     D+ TY S I G CK   ++ A  +   MV  G   +  T+N +I+
Sbjct: 336 AEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILIN 395

Query: 285 GFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNA 343
           G+C+A  I +  EL+  M  +G + + V+YN LI+G  E GK++ A  +++ +  +    
Sbjct: 396 GYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRP 455

Query: 344 DSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNS 403
           D  ++ +L++GLC NG   KA++I  ++E                  K   +L+    N 
Sbjct: 456 DIVSYKILLDGLCDNGEPEKALEIFEKIE------------------KSKMELDIGIYNI 497

Query: 404 LMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKG 463
           +++G   ASK+++A  LF  +  KG  P V +YN +I GLCK     EA    ++M E G
Sbjct: 498 IIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDG 557

Query: 464 WKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDAL 523
             P+  TY++LI           + KL  +  + GF+ D +   +++  L S G+++ + 
Sbjct: 558 HSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVDML-SDGRLKKSF 616



 Score =  108 bits (269), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 113/211 (53%)

Query: 413 KLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYS 472
           K ++A+ LF+EM+R    P ++ ++ L + + + +++       K+M  KG   ++ T S
Sbjct: 52  KEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLS 111

Query: 473 LLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKR 532
           ++IN  C+ +K+ +A     + ++ G+ PD   ++ LI+GLC  G+V +AL+L   M + 
Sbjct: 112 IMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEM 171

Query: 533 NCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDA 592
              P L+T N L++GL   G    A+ + + ++E   +P+ ++Y   LK +C   + + A
Sbjct: 172 GHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALA 231

Query: 593 FEFLNDALCRGILPTTITWHILVRAVMNNGA 623
            E L     R I    + + I++  +  +G+
Sbjct: 232 MELLRKMEERKIKLDAVKYSIIIDGLCKDGS 262


>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
           OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
          Length = 566

 Score =  245 bits (625), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 146/515 (28%), Positives = 266/515 (51%), Gaps = 26/515 (5%)

Query: 115 QFEKAKRFLNSLWE-KGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCY 173
           QF  +   L+ L E +  K     Y  +IN  V+S  L  +++ F+EM + G      C+
Sbjct: 73  QFFTSSSLLHYLTESETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCF 132

Query: 174 NILIDGFFKKGDYMRAKEIWERLVME--TSVYPNVVTYNVMINGLCKCGRFDECLEMWDR 231
           N L+        + +    W     E  + V  +V ++ ++I G C+ G  ++  ++   
Sbjct: 133 NYLLTFVVGSSSFNQ----WWSFFNENKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIE 188

Query: 232 MKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGK 291
           + +     +   Y + I G CK G +E A+ ++ EM + G+  +  TY  +I+G  + G 
Sbjct: 189 LTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGV 248

Query: 292 IKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGV 350
            K+ FE++E M   G   N+ +YN ++  L ++G+  +A  +++ +RE+  + +  T+  
Sbjct: 249 KKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNT 308

Query: 351 LINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQ 410
           LI GLC+                  E +L +A  +V++M   G   N  T N+L++GF  
Sbjct: 309 LIGGLCR------------------EMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCG 350

Query: 411 ASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMIT 470
             KL  A+ L +++  +G SP++V+YN L++G C+      A   VKEM E+G KP  +T
Sbjct: 351 VGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVT 410

Query: 471 YSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMK 530
           Y++LI+   +S  ++ A++L     + G  PDV  Y++LIHG C  G++ +A +L+ +M 
Sbjct: 411 YTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMV 470

Query: 531 KRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMS 590
           ++NC PN V YNT++ G  K G   +AL++   + E+ L P++ SY   ++ LC   +  
Sbjct: 471 EKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSK 530

Query: 591 DAFEFLNDALCRGILPTTITWHILVRAVMNNGAST 625
           +A   +   +  GI P+T    ++ RA  ++  S+
Sbjct: 531 EAERLVEKMIDSGIDPSTSILSLISRAKNDSHVSS 565



 Score =  202 bits (513), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 130/419 (31%), Positives = 212/419 (50%), Gaps = 25/419 (5%)

Query: 92  ALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDL 151
            LDV+     I GC     C   + EK+   L  L E G  P+V  Y T+I+G  K G++
Sbjct: 160 VLDVYSFGILIKGC-----CEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEI 214

Query: 152 LGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNV 211
             A  +F EM + G+  N   Y +LI+G FK G   +  E++E++  E  V+PN+ TYN 
Sbjct: 215 EKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKM-QEDGVFPNLYTYNC 273

Query: 212 MINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESG 271
           ++N LCK GR  +  +++D M++     +  TY + I GLC+   +  A +V  +M   G
Sbjct: 274 VMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDG 333

Query: 272 IFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKG-CLNVVSYNILIRGLLENGKVDEAI 330
           I  + +TYN +IDGFC  GK+ +   L   +  +G   ++V+YNIL+ G    G    A 
Sbjct: 334 INPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAA 393

Query: 331 SIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMD 390
            + + + E+       T+ +LI+   ++  + KAIQ+          RL+        M+
Sbjct: 394 KMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQL----------RLS--------ME 435

Query: 391 KHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFG 450
           + G   + +T + L++GF    ++  A  LFK M  K C P  V YNT+I G CK     
Sbjct: 436 ELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSY 495

Query: 451 EAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNIL 509
            A   +KEM EK   P++ +Y  +I  LC+ +K   A +L  + +  G  P  ++ +++
Sbjct: 496 RALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLI 554



 Score =  119 bits (298), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 128/259 (49%), Gaps = 10/259 (3%)

Query: 85  KNSMPDKALDVFQRMNE--------IFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVY 136
           K+     A  VF  M E         +    G LCR+ +  +A + ++ +   G+ P++ 
Sbjct: 280 KDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLI 339

Query: 137 SYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERL 196
           +Y T+I+G    G L  AL++  ++  RG+  ++V YNIL+ GF +KGD   A ++ + +
Sbjct: 340 TYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEM 399

Query: 197 VMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGN 256
             E  + P+ VTY ++I+   +    ++ +++   M++     D  TY   IHG C  G 
Sbjct: 400 -EERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQ 458

Query: 257 VEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKG-CLNVVSYNI 315
           +  A R+++ MVE     + V YN MI G+C+ G      +L + M  K    NV SY  
Sbjct: 459 MNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRY 518

Query: 316 LIRGLLENGKVDEAISIWE 334
           +I  L +  K  EA  + E
Sbjct: 519 MIEVLCKERKSKEAERLVE 537


>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
           SV=2
          Length = 630

 Score =  244 bits (623), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 145/494 (29%), Positives = 252/494 (51%), Gaps = 20/494 (4%)

Query: 130 GLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA 189
           G+  + Y+Y  +IN   +   L  ALAV  +M + G E N+V  + L++G+        A
Sbjct: 111 GIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEA 170

Query: 190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIH 249
             + +++ + T   PN VT+N +I+GL    +  E + + DRM     + D  TY   ++
Sbjct: 171 VALVDQMFV-TGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVN 229

Query: 250 GLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL- 308
           GLCK G+ + A  +  +M +  +    + YN +IDG C+   + +   L++ M  KG   
Sbjct: 230 GLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRP 289

Query: 309 NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQIL 368
           NVV+Y+ LI  L   G+  +A  +   + E+  N D  T   LI+   K           
Sbjct: 290 NVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK----------- 338

Query: 369 NEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKG 428
                  EG+L +A  L + M K     +  T +SL+NGF    +L+ A  +F+ M  K 
Sbjct: 339 -------EGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH 391

Query: 429 CSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMAL 488
           C P VV+YNTLI G CK +R  E     +EM ++G   + +TY++LI GL Q+   DMA 
Sbjct: 392 CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQ 451

Query: 489 KLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGL 548
           ++  + +  G  P++  YN L+ GLC  GK+E A+ ++  +++    P + TYN +++G+
Sbjct: 452 EIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGM 511

Query: 549 FKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTT 608
            K G  +   +++ ++  + ++PD+++YN  + G C      +A     +    G LP +
Sbjct: 512 CKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNS 571

Query: 609 ITWHILVRAVMNNG 622
             ++ L+RA + +G
Sbjct: 572 GCYNTLIRARLRDG 585



 Score =  243 bits (620), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 137/451 (30%), Positives = 233/451 (51%), Gaps = 20/451 (4%)

Query: 111 CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNV 170
           C  ++  +A   ++ ++  G +P+  ++ T+I+GL        A+A+ D M  +G + ++
Sbjct: 162 CHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDL 221

Query: 171 VCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWD 230
           V Y ++++G  K+GD   A  +  ++  +  + P V+ YN +I+GLCK    D+ L ++ 
Sbjct: 222 VTYGVVVNGLCKRGDTDLAFNLLNKM-EQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFK 280

Query: 231 RMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAG 290
            M+      +  TY S I  LC  G    A R+  +M+E  I  D  T++A+ID F + G
Sbjct: 281 EMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEG 340

Query: 291 KIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHG 349
           K+ E  +L++ M ++    ++V+Y+ LI G   + ++DEA  ++E +  K+C  D  T+ 
Sbjct: 341 KLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYN 400

Query: 350 VLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFI 409
            LI G CK             VEEG E        +   M + G   N  T N L+ G  
Sbjct: 401 TLIKGFCK----------YKRVEEGME--------VFREMSQRGLVGNTVTYNILIQGLF 442

Query: 410 QASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMI 469
           QA   + A  +FKEM   G  P +++YNTL++GLCK  +  +A    + +     +P + 
Sbjct: 443 QAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIY 502

Query: 470 TYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNM 529
           TY+++I G+C++ K++    L C    KG  PDV  YN +I G C  G  E+A  L+  M
Sbjct: 503 TYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEM 562

Query: 530 KKRNCVPNLVTYNTLMDGLFKTGDCDKALEI 560
           K+   +PN   YNTL+    + GD + + E+
Sbjct: 563 KEDGTLPNSGCYNTLIRARLRDGDREASAEL 593



 Score =  239 bits (609), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 133/493 (26%), Positives = 254/493 (51%), Gaps = 22/493 (4%)

Query: 133 PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEI 192
           P +  +  +++ + K       +++ ++M   G+  N   Y+ILI+ F ++     A  +
Sbjct: 79  PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 138

Query: 193 WERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLC 252
             ++ M+    PN+VT + ++NG C   R  E + + D+M     + ++ T+ + IHGL 
Sbjct: 139 LGKM-MKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLF 197

Query: 253 KAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL--NV 310
                  A  +   MV  G   D VTY  +++G C+ G     F L   M  +G L   V
Sbjct: 198 LHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKM-EQGKLEPGV 256

Query: 311 VSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNE 370
           + YN +I GL +   +D+A+++++ +  K    +  T+  LI+ LC              
Sbjct: 257 LIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCN------------- 303

Query: 371 VEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCS 430
                 GR +DA+ L++ M +     + +T ++L++ F++  KL  A  L+ EM ++   
Sbjct: 304 -----YGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSID 358

Query: 431 PTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKL 490
           P++V+Y++LING C  +R  EA    + M+ K   PD++TY+ LI G C+ K+++  +++
Sbjct: 359 PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEV 418

Query: 491 CCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK 550
             +  Q+G   +   YNILI GL  AG  + A +++  M      PN++TYNTL+DGL K
Sbjct: 419 FREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCK 478

Query: 551 TGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTIT 610
            G  +KA+ ++ ++   ++ P I +YNI ++G+C   ++ D ++   +   +G+ P  + 
Sbjct: 479 NGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVA 538

Query: 611 WHILVRAVMNNGA 623
           ++ ++      G+
Sbjct: 539 YNTMISGFCRKGS 551



 Score =  197 bits (500), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 128/465 (27%), Positives = 220/465 (47%), Gaps = 60/465 (12%)

Query: 214 NGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIF 273
           NGL +  + D+ + ++  M K+        +   +  + K    +    +  +M   GI 
Sbjct: 55  NGLSEL-KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIP 113

Query: 274 VDAVTYNAMI-----------------------------------DGFCRAGKIKECFEL 298
            +  TY+ +I                                   +G+C + +I E   L
Sbjct: 114 HNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVAL 173

Query: 299 WEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCK 357
            + M   G   N V++N LI GL  + K  EA+++ + +  K C  D  T+GV++NGLCK
Sbjct: 174 VDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCK 233

Query: 358 NGYLNKAIQILNEVEEGG------------EG-----RLADAASLVNRMDKHGCKLNAYT 400
            G  + A  +LN++E+G             +G      + DA +L   M+  G + N  T
Sbjct: 234 RGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVT 293

Query: 401 CNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEML 460
            +SL++      +  +A  L  +M  +  +P V +++ LI+   K  +  EA     EM+
Sbjct: 294 YSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMV 353

Query: 461 EKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVE 520
           ++   P ++TYS LING C   ++D A ++    + K   PDV  YN LI G C   +VE
Sbjct: 354 KRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVE 413

Query: 521 DALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITL 580
           + ++++  M +R  V N VTYN L+ GLF+ GDCD A EI+  ++ + + P+I++YN  L
Sbjct: 414 EGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLL 473

Query: 581 KGLCSCSRMSDA---FEFLNDALCRGILPTTITWHILVRAVMNNG 622
            GLC   ++  A   FE+L  +    + PT  T++I++  +   G
Sbjct: 474 DGLCKNGKLEKAMVVFEYLQRS---KMEPTIYTYNIMIEGMCKAG 515


>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
           OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
          Length = 559

 Score =  243 bits (621), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 144/508 (28%), Positives = 260/508 (51%), Gaps = 19/508 (3%)

Query: 133 PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEI 192
           P ++ +  +++ + K       +++ ++M   G+  N+  YNILI+ F ++     A  +
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67

Query: 193 WERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLC 252
             ++ M+    P++VT + ++NG C   R  + + + D+M +     D+ T+ + IHGL 
Sbjct: 68  LGKM-MKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLF 126

Query: 253 KAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVM-GRKGCLNVV 311
                  A  +   MV+ G   + VTY  +++G C+ G I   F L   M   K   +VV
Sbjct: 127 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVV 186

Query: 312 SYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEV 371
            +N +I  L +   VD+A+++++ +  K    +  T+  LI+ LC  G  + A Q+L+++
Sbjct: 187 IFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM 246

Query: 372 EEGG-----------------EGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKL 414
            E                   EG+  +A  L + M K     + +T NSL+NGF    +L
Sbjct: 247 IEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRL 306

Query: 415 ENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLL 474
           + A  +F+ M  K C P + +YNTLI G CK +R  +     +EM  +G   D +TY+ L
Sbjct: 307 DKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTL 366

Query: 475 INGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNC 534
           I GL      D A K+  Q +  G  PD+  Y+IL+ GLC+ GK+E AL+++  M+K   
Sbjct: 367 IQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 426

Query: 535 VPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFE 594
             ++  Y T+++G+ K G  D   +++  +  + ++P++++YN  + GLCS   + +A+ 
Sbjct: 427 KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYA 486

Query: 595 FLNDALCRGILPTTITWHILVRAVMNNG 622
            L      G LP + T++ L+RA + +G
Sbjct: 487 LLKKMKEDGPLPDSGTYNTLIRAHLRDG 514



 Score =  235 bits (600), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 139/474 (29%), Positives = 244/474 (51%), Gaps = 20/474 (4%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
            CR+ Q   A   L  + + G +P + +  +++NG      +  A+A+ D+M E G   +
Sbjct: 55  FCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPD 114

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
            + +  LI G F       A  + +R+V +    PN+VTY V++NGLCK G  D    + 
Sbjct: 115 TITFTTLIHGLFLHNKASEAVALVDRMV-QRGCQPNLVTYGVVVNGLCKRGDIDLAFNLL 173

Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
           ++M+  + E D   + + I  LCK  +V+ A  +++EM   GI  + VTY+++I   C  
Sbjct: 174 NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSY 233

Query: 290 GKIKECFELW-EVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348
           G+  +  +L  +++ +K   N+V++N LI   ++ GK  EA  + + + +++ + D  T+
Sbjct: 234 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTY 293

Query: 349 GVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGF 408
             LING C +  L+KA Q+                     M    C  +  T N+L+ GF
Sbjct: 294 NSLINGFCMHDRLDKAKQMF------------------EFMVSKDCFPDLDTYNTLIKGF 335

Query: 409 IQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM 468
            ++ ++E+   LF+EMS +G     V+Y TLI GL        A    K+M+  G  PD+
Sbjct: 336 CKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDI 395

Query: 469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSN 528
           +TYS+L++GLC + K++ AL++     +     D+ +Y  +I G+C AGKV+D   L+ +
Sbjct: 396 MTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCS 455

Query: 529 MKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKG 582
           +  +   PN+VTYNT++ GL       +A  +   + E+   PD  +YN  ++ 
Sbjct: 456 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRA 509



 Score =  224 bits (572), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/452 (29%), Positives = 225/452 (49%), Gaps = 22/452 (4%)

Query: 111 CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNV 170
           C  ++   A   ++ + E G +PD  ++ T+I+GL        A+A+ D M +RG + N+
Sbjct: 91  CHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNL 150

Query: 171 VCYNILIDGFFKKGDYMRAKEIWERLVMETS-VYPNVVTYNVMINGLCKCGRFDECLEMW 229
           V Y ++++G  K+GD   A  +  +  ME + +  +VV +N +I+ LCK    D+ L ++
Sbjct: 151 VTYGVVVNGLCKRGDIDLAFNLLNK--MEAAKIEADVVIFNTIIDSLCKYRHVDDALNLF 208

Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
             M+      +  TY S I  LC  G    A ++  +M+E  I  + VT+NA+ID F + 
Sbjct: 209 KEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKE 268

Query: 290 GKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348
           GK  E  +L + M ++    ++ +YN LI G   + ++D+A  ++E +  K+C  D  T+
Sbjct: 269 GKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTY 328

Query: 349 GVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGF 408
             LI G CK+                   R+ D   L   M   G   +  T  +L+ G 
Sbjct: 329 NTLIKGFCKSK------------------RVEDGTELFREMSHRGLVGDTVTYTTLIQGL 370

Query: 409 IQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM 468
                 +NA  +FK+M   G  P +++Y+ L++GLC   +  +A      M +   K D+
Sbjct: 371 FHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI 430

Query: 469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSN 528
             Y+ +I G+C++ K+D    L C    KG  P+V  YN +I GLCS   +++A  L   
Sbjct: 431 YIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKK 490

Query: 529 MKKRNCVPNLVTYNTLMDGLFKTGDCDKALEI 560
           MK+   +P+  TYNTL+    + GD   + E+
Sbjct: 491 MKEDGPLPDSGTYNTLIRAHLRDGDKAASAEL 522



 Score =  173 bits (439), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 128/489 (26%), Positives = 223/489 (45%), Gaps = 35/489 (7%)

Query: 2   VISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRIL 61
           +++   LLN     K    A+AL D    E GY      F  ++  L    L    S  +
Sbjct: 80  IVTLSSLLNGYCHGKRISDAVALVDQMV-EMGYRPDTITFTTLIHGLF---LHNKASEAV 135

Query: 62  ELIE--IQKCYCPEDVALSVI-QAYGKNSMPDKALDVFQRMNE--------IFGCEAGIL 110
            L++  +Q+   P  V   V+     K    D A ++  +M          IF      L
Sbjct: 136 ALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSL 195

Query: 111 CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNV 170
           C+ R  + A      +  KG++P+V +Y ++I+ L   G    A  +  +M E+ +  N+
Sbjct: 196 CKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNL 255

Query: 171 VCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWD 230
           V +N LID F K+G ++ A+++ + ++ + S+ P++ TYN +ING C   R D+  +M++
Sbjct: 256 VTFNALIDAFVKEGKFVEAEKLHDDMI-KRSIDPDIFTYNSLINGFCMHDRLDKAKQMFE 314

Query: 231 RMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAG 290
            M   +   D  TY + I G CK+  VE    ++REM   G+  D VTY  +I G    G
Sbjct: 315 FMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDG 374

Query: 291 KIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHG 349
                 ++++ M   G   ++++Y+IL+ GL  NGK+++A+ +++ +++     D   + 
Sbjct: 375 DCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYT 434

Query: 350 VLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFI 409
            +I G+CK                   G++ D   L   +   G K N  T N++++G  
Sbjct: 435 TMIEGMCK------------------AGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLC 476

Query: 410 QASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMI 469
               L+ A  L K+M   G  P   +YNTLI    +      +   ++EM    +  D  
Sbjct: 477 SKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDAS 536

Query: 470 TYSLLINGL 478
           T  L+ N L
Sbjct: 537 TIGLVANML 545


>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
           OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
          Length = 634

 Score =  243 bits (619), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 152/512 (29%), Positives = 262/512 (51%), Gaps = 26/512 (5%)

Query: 118 KAKRF--LNSLWEKGLKPDV----YSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVV 171
           K K+F  + SL EK  + ++    Y+Y  +IN   +   +  ALA+  +M + G E ++V
Sbjct: 97  KMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIV 156

Query: 172 CYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDR 231
             + L++G+        A  + +++V E    P+ +T+  +I+GL    +  E + + DR
Sbjct: 157 TLSSLLNGYCHGKRISDAVALVDQMV-EMGYRPDTITFTTLIHGLFLHNKASEAVALVDR 215

Query: 232 MKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGK 291
           M +   + +  TY   ++GLCK G+ + A  +  +M  + I  D V +N +ID  C+   
Sbjct: 216 MVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRH 275

Query: 292 IKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGV 350
           + +   L++ M  KG   NVV+Y+ LI  L   G+  +A  +   + EK  N +  T   
Sbjct: 276 VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNA 335

Query: 351 LINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQ 410
           LI+   K                  EG+  +A  L + M K     + +T NSL+NGF  
Sbjct: 336 LIDAFVK------------------EGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCM 377

Query: 411 ASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMIT 470
             +L+ A  +F+ M  K C P VV+YNTLI G CK +R  +     +EM  +G   D +T
Sbjct: 378 HDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVT 437

Query: 471 YSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMK 530
           Y+ LI GL      D A K+  Q +  G  PD+  Y+IL+ GLC+ GK+E AL+++  M+
Sbjct: 438 YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQ 497

Query: 531 KRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMS 590
           K     ++  Y T+++G+ K G  D   +++  +  + ++P++++YN  + GLCS   + 
Sbjct: 498 KSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQ 557

Query: 591 DAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
           +A+  L      G LP + T++ L+RA + +G
Sbjct: 558 EAYALLKKMKEDGPLPNSGTYNTLIRAHLRDG 589



 Score =  228 bits (580), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 134/464 (28%), Positives = 229/464 (49%), Gaps = 22/464 (4%)

Query: 111 CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNV 170
           C  ++   A   ++ + E G +PD  ++ T+I+GL        A+A+ D M +RG + N+
Sbjct: 166 CHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNL 225

Query: 171 VCYNILIDGFFKKGDYMRAKEIWERLVMETS-VYPNVVTYNVMINGLCKCGRFDECLEMW 229
           V Y ++++G  K+GD   A  +  +  ME + +  +VV +N +I+ LCK    D+ L ++
Sbjct: 226 VTYGVVVNGLCKRGDTDLALNLLNK--MEAAKIEADVVIFNTIIDSLCKYRHVDDALNLF 283

Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
             M+      +  TY S I  LC  G    A ++  +M+E  I  + VT+NA+ID F + 
Sbjct: 284 KEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKE 343

Query: 290 GKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348
           GK  E  +L++ M ++    ++ +YN L+ G   + ++D+A  ++E +  K+C  D  T+
Sbjct: 344 GKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTY 403

Query: 349 GVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGF 408
             LI G CK+                   R+ D   L   M   G   +  T  +L+ G 
Sbjct: 404 NTLIKGFCKSK------------------RVEDGTELFREMSHRGLVGDTVTYTTLIQGL 445

Query: 409 IQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM 468
                 +NA  +FK+M   G  P +++Y+ L++GLC   +  +A      M +   K D+
Sbjct: 446 FHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI 505

Query: 469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSN 528
             Y+ +I G+C++ K+D    L C    KG  P+V  YN +I GLCS   +++A  L   
Sbjct: 506 YIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKK 565

Query: 529 MKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD 572
           MK+   +PN  TYNTL+    + GD   + E+   +   R   D
Sbjct: 566 MKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGD 609



 Score =  221 bits (563), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 118/412 (28%), Positives = 218/412 (52%), Gaps = 18/412 (4%)

Query: 204 PNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERV 263
           P++V +N +++ + K  +FD  + + ++M++ E     +TY   I+  C+   +  A  +
Sbjct: 83  PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 142

Query: 264 YREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIRGLLE 322
             +M++ G     VT +++++G+C   +I +   L + M   G   + +++  LI GL  
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202

Query: 323 NGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEG-------- 374
           + K  EA+++ + + ++ C  +  T+GV++NGLCK G  + A+ +LN++E          
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 262

Query: 375 ---------GEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMS 425
                        + DA +L   M+  G + N  T +SL++      +  +A  L  +M 
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322

Query: 426 RKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKID 485
            K  +P +V++N LI+   K  +F EA     +M+++   PD+ TY+ L+NG C   ++D
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 382

Query: 486 MALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLM 545
            A ++    + K   PDV  YN LI G C + +VED  +L+  M  R  V + VTY TL+
Sbjct: 383 KAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 442

Query: 546 DGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLN 597
            GLF  GDCD A +++  ++ + + PDI++Y+I L GLC+  ++  A E  +
Sbjct: 443 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFD 494



 Score =  178 bits (451), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 128/489 (26%), Positives = 225/489 (46%), Gaps = 35/489 (7%)

Query: 2   VISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRIL 61
           +++   LLN     K    A+AL D    E GY      F  ++  L    L    S  +
Sbjct: 155 IVTLSSLLNGYCHGKRISDAVALVDQMV-EMGYRPDTITFTTLIHGLF---LHNKASEAV 210

Query: 62  ELIE--IQKCYCPEDVALSVI-QAYGKNSMPDKALDVFQRMNE--------IFGCEAGIL 110
            L++  +Q+   P  V   V+     K    D AL++  +M          IF      L
Sbjct: 211 ALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSL 270

Query: 111 CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNV 170
           C+ R  + A      +  KG++P+V +Y ++I+ L   G    A  +  +M E+ +  N+
Sbjct: 271 CKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNL 330

Query: 171 VCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWD 230
           V +N LID F K+G ++ A+++++ ++ + S+ P++ TYN ++NG C   R D+  +M++
Sbjct: 331 VTFNALIDAFVKEGKFVEAEKLYDDMI-KRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFE 389

Query: 231 RMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAG 290
            M   +   D  TY + I G CK+  VE    ++REM   G+  D VTY  +I G    G
Sbjct: 390 FMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDG 449

Query: 291 KIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHG 349
                 ++++ M   G   ++++Y+IL+ GL  NGK+++A+ +++ +++     D   + 
Sbjct: 450 DCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYT 509

Query: 350 VLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFI 409
            +I G+CK                   G++ D   L   +   G K N  T N++++G  
Sbjct: 510 TMIEGMCK------------------AGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLC 551

Query: 410 QASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMI 469
               L+ A  L K+M   G  P   +YNTLI    +      +   ++EM    +  D  
Sbjct: 552 SKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDAS 611

Query: 470 TYSLLINGL 478
           T  L+ N L
Sbjct: 612 TIGLVANML 620



 Score =  139 bits (350), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 125/245 (51%)

Query: 378 RLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYN 437
           +L DA  L   M K     +    N L++   +  K +  I L ++M R      + +YN
Sbjct: 65  KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 124

Query: 438 TLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQK 497
            LIN  C+  +   A + + +M++ G++P ++T S L+NG C  K+I  A+ L  Q ++ 
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184

Query: 498 GFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKA 557
           G+ PD   +  LIHGL    K  +A+ L   M +R C PNLVTY  +++GL K GD D A
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 244

Query: 558 LEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRA 617
           L + N +   ++  D++ +N  +  LC    + DA     +   +GI P  +T+  L+  
Sbjct: 245 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 304

Query: 618 VMNNG 622
           + + G
Sbjct: 305 LCSYG 309



 Score = 57.8 bits (138), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 2/153 (1%)

Query: 473 LLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKR 532
           +L NGL    K+D A+ L    ++    P +  +N L+  +    K +  + L   M++ 
Sbjct: 56  ILRNGL-HDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRL 114

Query: 533 NCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDA 592
             V  L TYN L++   +      AL +   +++    P I++ +  L G C   R+SDA
Sbjct: 115 EIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDA 174

Query: 593 FEFLNDALCRGILPTTITWHILVRAV-MNNGAS 624
              ++  +  G  P TIT+  L+  + ++N AS
Sbjct: 175 VALVDQMVEMGYRPDTITFTTLIHGLFLHNKAS 207


>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
           OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
          Length = 915

 Score =  242 bits (618), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 175/627 (27%), Positives = 309/627 (49%), Gaps = 29/627 (4%)

Query: 2   VISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRIL 61
            IS   + +L   + +P TAL      ++ P Y HS + +  +L  LI+   V  V +I 
Sbjct: 87  AISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKI- 145

Query: 62  ELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQF---EK 118
            L+ I+ C    D AL V+    K +  D+  ++  ++  I GC   +L    +F   ++
Sbjct: 146 RLLMIKSCDSVGD-ALYVLDLCRKMN-KDERFELKYKL--IIGCYNTLLNSLARFGLVDE 201

Query: 119 AKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILID 178
            K+    + E  + P++Y+Y  ++NG  K G++  A     ++ E G++ +   Y  LI 
Sbjct: 202 MKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIM 261

Query: 179 GFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNERE 238
           G+ ++ D   A +++  + ++     N V Y  +I+GLC   R DE ++++ +MK +E  
Sbjct: 262 GYCQRKDLDSAFKVFNEMPLK-GCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECF 320

Query: 239 KDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFEL 298
               TY   I  LC +     A  + +EM E+GI  +  TY  +ID  C   K ++  EL
Sbjct: 321 PTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKAREL 380

Query: 299 WEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCK 357
              M  KG + NV++YN LI G  + G +++A+ + EL+  +  + ++ T+  LI G CK
Sbjct: 381 LGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK 440

Query: 358 NGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENA 417
           +  ++KA+ +LN++ E     L D                  T NSL++G  ++   ++A
Sbjct: 441 SN-VHKAMGVLNKMLE--RKVLPDVV----------------TYNSLIDGQCRSGNFDSA 481

Query: 418 IFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLING 477
             L   M+ +G  P   +Y ++I+ LCK +R  EA      + +KG  P+++ Y+ LI+G
Sbjct: 482 YRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDG 541

Query: 478 LCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN 537
            C++ K+D A  +  + L K   P+   +N LIHGLC+ GK+++A  L   M K    P 
Sbjct: 542 YCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPT 601

Query: 538 LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLN 597
           + T   L+  L K GD D A   +  +L    +PD  +Y   ++  C   R+ DA + + 
Sbjct: 602 VSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMA 661

Query: 598 DALCRGILPTTITWHILVRAVMNNGAS 624
                G+ P   T+  L++   + G +
Sbjct: 662 KMRENGVSPDLFTYSSLIKGYGDLGQT 688



 Score =  220 bits (561), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 155/568 (27%), Positives = 269/568 (47%), Gaps = 52/568 (9%)

Query: 78  SVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI---------LCRKRQFEKAKRFLNSLWE 128
           S+I  Y +    D A  VF  M  + GC             LC  R+ ++A      + +
Sbjct: 258 SLIMGYCQRKDLDSAFKVFNEM-PLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKD 316

Query: 129 KGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMR 188
               P V +Y  +I  L  S     AL +  EM E G++ N+  Y +LID    +  + +
Sbjct: 317 DECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEK 376

Query: 189 AKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFI 248
           A+E+  ++ +E  + PNV+TYN +ING CK G  ++ +++ + M+  +   ++ TY   I
Sbjct: 377 ARELLGQM-LEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELI 435

Query: 249 HGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL 308
            G CK+ NV  A  V  +M+E  +  D VTYN++IDG CR+G     + L  +M  +G +
Sbjct: 436 KGYCKS-NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLV 494

Query: 309 -NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQI 367
            +  +Y  +I  L ++ +V+EA  +++ L +K  N +   +  LI+G CK          
Sbjct: 495 PDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCK---------- 544

Query: 368 LNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRK 427
                    G++ +A  ++ +M    C  N+ T N+L++G     KL+ A  L ++M + 
Sbjct: 545 --------AGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKI 596

Query: 428 GCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMA 487
           G  PTV +   LI+ L K   F  AYS  ++ML  G KPD  TY+  I   C+  ++  A
Sbjct: 597 GLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDA 656

Query: 488 LKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDG 547
             +  +  + G +PD+  Y+ LI G    G+   A  +   M+   C P+  T+ +L+  
Sbjct: 657 EDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKH 716

Query: 548 LFKTG------------------DCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRM 589
           L +                    + D  +E+   ++E  + P+  SY   + G+C    +
Sbjct: 717 LLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNL 776

Query: 590 SDAFEFLNDALCR--GILPTTITWHILV 615
             A E + D + R  GI P+ + ++ L+
Sbjct: 777 RVA-EKVFDHMQRNEGISPSELVFNALL 803



 Score =  218 bits (556), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 164/626 (26%), Positives = 296/626 (47%), Gaps = 55/626 (8%)

Query: 39  HLFHHI-LRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQ 97
           HL H + + R ID  + + V      ++  +C+        +I++   +    +AL++ +
Sbjct: 293 HLIHGLCVARRIDEAMDLFVK-----MKDDECFPTVRTYTVLIKSLCGSERKSEALNLVK 347

Query: 98  RMNEIFGCEAGI---------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKS 148
            M E  G +  I         LC + +FEKA+  L  + EKGL P+V +Y  +ING  K 
Sbjct: 348 EMEET-GIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKR 406

Query: 149 GDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVT 208
           G +  A+ V + M  R +  N   YN LI G+ K  +  +A  +  ++ +E  V P+VVT
Sbjct: 407 GMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNKM-LERKVLPDVVT 464

Query: 209 YNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMV 268
           YN +I+G C+ G FD    +   M       D +TY S I  LCK+  VE A  ++  + 
Sbjct: 465 YNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLE 524

Query: 269 ESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVD 327
           + G+  + V Y A+IDG+C+AGK+ E   + E M  K CL N +++N LI GL  +GK+ 
Sbjct: 525 QKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLK 584

Query: 328 EAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG------------ 375
           EA  + E + +       +T  +LI+ L K+G  + A     ++   G            
Sbjct: 585 EATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFI 644

Query: 376 -----EGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCS 430
                EGRL DA  ++ +M ++G   + +T +SL+ G+    +   A  + K M   GC 
Sbjct: 645 QTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCE 704

Query: 431 PTVVSYNTLINGLCKVE------------------RFGEAYSFVKEMLEKGWKPDMITYS 472
           P+  ++ +LI  L +++                   F      +++M+E    P+  +Y 
Sbjct: 705 PSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYE 764

Query: 473 LLINGLCQSKKIDMALKLCCQFLQ-KGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKK 531
            LI G+C+   + +A K+     + +G +P   ++N L+   C   K  +A ++  +M  
Sbjct: 765 KLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMIC 824

Query: 532 RNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSD 591
              +P L +   L+ GL+K G+ ++   ++ ++L+     D +++ I + G+     +  
Sbjct: 825 VGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEA 884

Query: 592 AFEFLNDALCRGILPTTITWHILVRA 617
            +E  N     G   ++ T+ +L+  
Sbjct: 885 FYELFNVMEKNGCKFSSQTYSLLIEG 910



 Score =  189 bits (479), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 153/573 (26%), Positives = 272/573 (47%), Gaps = 39/573 (6%)

Query: 9   LNLLKA------EKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRI-- 60
           LNL+K       + N HT   L DS   +  +  +  L   +L + + P ++ + + I  
Sbjct: 343 LNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALING 402

Query: 61  -------------LELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNE------ 101
                        +EL+E +K          +I+ Y K+++  KA+ V  +M E      
Sbjct: 403 YCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNV-HKAMGVLNKMLERKVLPD 461

Query: 102 --IFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFD 159
              +       CR   F+ A R L+ + ++GL PD ++Y ++I+ L KS  +  A  +FD
Sbjct: 462 VVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFD 521

Query: 160 EMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKC 219
            + ++GV  NVV Y  LIDG+ K G    A  + E+++ +  + PN +T+N +I+GLC  
Sbjct: 522 SLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCL-PNSLTFNALIHGLCAD 580

Query: 220 GRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTY 279
           G+  E   + ++M K   +    T    IH L K G+ + A   +++M+ SG   DA TY
Sbjct: 581 GKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTY 640

Query: 280 NAMIDGFCRAGKIKECFELWEVMGRKG-CLNVVSYNILIRGLLENGKVDEAISIWELLRE 338
              I  +CR G++ +  ++   M   G   ++ +Y+ LI+G  + G+ + A  + + +R+
Sbjct: 641 TTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRD 700

Query: 339 KNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLAD---AASLVNRMDKHGCK 395
             C     T   LI  L +  Y     Q  +E E      + +      L+ +M +H   
Sbjct: 701 TGCEPSQHTFLSLIKHLLEMKY---GKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVT 757

Query: 396 LNAYTCNSLMNGFIQASKLENAIFLFKEMSR-KGCSPTVVSYNTLINGLCKVERFGEAYS 454
            NA +   L+ G  +   L  A  +F  M R +G SP+ + +N L++  CK+++  EA  
Sbjct: 758 PNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAK 817

Query: 455 FVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLC 514
            V +M+  G  P + +  +LI GL +  + +    +    LQ G+  D   + I+I G+ 
Sbjct: 818 VVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVG 877

Query: 515 SAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDG 547
             G VE   +L++ M+K  C  +  TY+ L++G
Sbjct: 878 KQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910


>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
           SV=2
          Length = 838

 Score =  241 bits (616), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 157/562 (27%), Positives = 261/562 (46%), Gaps = 63/562 (11%)

Query: 102 IFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEM 161
           +F       C+  + E+A +  + + E G+ P+V ++ TVI+GL   G    A    ++M
Sbjct: 275 LFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKM 334

Query: 162 FERGVETNVVCYNILIDGFFKK---GD-YMRAKEIWERLVMETSVYPNVVTYNVMINGLC 217
            ERG+E  ++ Y+IL+ G  +    GD Y   KE+ ++        PNV+ YN +I+   
Sbjct: 335 VERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKK-----GFPPNVIVYNNLIDSFI 389

Query: 218 KCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAV 277
           + G  ++ +E+ D M        S TY + I G CK G  + AER+ +EM+  G  V+  
Sbjct: 390 EAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQG 449

Query: 278 TYNA-----------------------------------MIDGFCRAGKIKECFELWEVM 302
           ++ +                                   +I G C+ GK  +  ELW   
Sbjct: 450 SFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQF 509

Query: 303 GRKG-CLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYL 361
             KG  ++  + N L+ GL E GK+DEA  I + +  + C  D  ++  LI+G C    L
Sbjct: 510 LNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKL 569

Query: 362 NKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLF 421
           ++A   L+E                  M K G K + YT + L+ G    +K+E AI  +
Sbjct: 570 DEAFMFLDE------------------MVKRGLKPDNYTYSILICGLFNMNKVEEAIQFW 611

Query: 422 KEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQS 481
            +  R G  P V +Y+ +I+G CK ER  E   F  EM+ K  +P+ + Y+ LI   C+S
Sbjct: 612 DDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRS 671

Query: 482 KKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTY 541
            ++ MAL+L      KG +P+   Y  LI G+    +VE+A  L+  M+     PN+  Y
Sbjct: 672 GRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHY 731

Query: 542 NTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALC 601
             L+DG  K G   K   +   +  + + P+ I+Y + + G      +++A   LN+   
Sbjct: 732 TALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMRE 791

Query: 602 RGILPTTITWHILVRAVMNNGA 623
           +GI+P +IT+   +   +  G 
Sbjct: 792 KGIVPDSITYKEFIYGYLKQGG 813



 Score =  236 bits (602), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 149/508 (29%), Positives = 253/508 (49%), Gaps = 20/508 (3%)

Query: 126 LWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGD 185
           L  KG+ P   +   ++  LV++ +       FD +  +GV  +V  +   I+ F K G 
Sbjct: 230 LANKGMFPSKTTCNILLTSLVRANEFQKCCEAFD-VVCKGVSPDVYLFTTAINAFCKGGK 288

Query: 186 YMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYC 245
              A +++ ++  E  V PNVVT+N +I+GL  CGR+DE     ++M +   E    TY 
Sbjct: 289 VEEAVKLFSKM-EEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYS 347

Query: 246 SFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRK 305
             + GL +A  +  A  V +EM + G   + + YN +ID F  AG + +  E+ ++M  K
Sbjct: 348 ILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSK 407

Query: 306 G-CLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKA 364
           G  L   +YN LI+G  +NG+ D A  + + +     N +  +   +I  LC +   + A
Sbjct: 408 GLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSA 467

Query: 365 IQILNEV----EEGGEGRLADAASLVNRMDKH-------------GCKLNAYTCNSLMNG 407
           ++ + E+       G G L    S + +  KH             G  ++  T N+L++G
Sbjct: 468 LRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHG 527

Query: 408 FIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPD 467
             +A KL+ A  + KE+  +GC    VSYNTLI+G C  ++  EA+ F+ EM+++G KPD
Sbjct: 528 LCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPD 587

Query: 468 MITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYS 527
             TYS+LI GL    K++ A++      + G  PDV  Y+++I G C A + E+  + + 
Sbjct: 588 NYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFD 647

Query: 528 NMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCS 587
            M  +N  PN V YN L+    ++G    ALE+   +  + + P+  +Y   +KG+   S
Sbjct: 648 EMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIIS 707

Query: 588 RMSDAFEFLNDALCRGILPTTITWHILV 615
           R+ +A     +    G+ P    +  L+
Sbjct: 708 RVEEAKLLFEEMRMEGLEPNVFHYTALI 735



 Score =  102 bits (254), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 7/165 (4%)

Query: 462 KGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQ---KGFTPDVTMYNILIHGLCSAGK 518
           KG  P   T ++L+  L ++ +     + CC+      KG +PDV ++   I+  C  GK
Sbjct: 233 KGMFPSKTTCNILLTSLVRANE----FQKCCEAFDVVCKGVSPDVYLFTTAINAFCKGGK 288

Query: 519 VEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNI 578
           VE+A++L+S M++    PN+VT+NT++DGL   G  D+A      ++E  + P +I+Y+I
Sbjct: 289 VEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSI 348

Query: 579 TLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNGA 623
            +KGL    R+ DA+  L +   +G  P  I ++ L+ + +  G+
Sbjct: 349 LVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGS 393



 Score = 36.6 bits (83), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 26/53 (49%)

Query: 108 GILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDE 160
           G   R     +A R LN + EKG+ PD  +Y   I G +K G +L A    DE
Sbjct: 771 GGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDE 823


>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
           OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
          Length = 1096

 Score =  239 bits (610), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 146/495 (29%), Positives = 246/495 (49%), Gaps = 22/495 (4%)

Query: 130 GLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA 189
           G  P VY+   ++  +VKSG+ +   +   EM +R +  +V  +NILI+    +G + ++
Sbjct: 153 GFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKS 212

Query: 190 KEIWERLVMETSVY-PNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFI 248
             + ++  ME S Y P +VTYN +++  CK GRF   +E+ D MK    + D  TY   I
Sbjct: 213 SYLMQK--MEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLI 270

Query: 249 HGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKG-C 307
           H LC++  +     + R+M +  I  + VTYN +I+GF   GK+    +L   M   G  
Sbjct: 271 HDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLS 330

Query: 308 LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQI 367
            N V++N LI G +  G   EA+ ++ ++  K       ++GVL++GLCKN   + A   
Sbjct: 331 PNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLA--- 387

Query: 368 LNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRK 427
                               RM ++G  +   T   +++G  +   L+ A+ L  EMS+ 
Sbjct: 388 ---------------RGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKD 432

Query: 428 GCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMA 487
           G  P +V+Y+ LING CKV RF  A   V  +   G  P+ I YS LI   C+   +  A
Sbjct: 433 GIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEA 492

Query: 488 LKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDG 547
           +++    + +G T D   +N+L+  LC AGKV +A +    M     +PN V+++ L++G
Sbjct: 493 IRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLING 552

Query: 548 LFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPT 607
              +G+  KA  +++ + +    P   +Y   LKGLC    + +A +FL           
Sbjct: 553 YGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVD 612

Query: 608 TITWHILVRAVMNNG 622
           T+ ++ L+ A+  +G
Sbjct: 613 TVMYNTLLTAMCKSG 627



 Score =  202 bits (513), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 144/518 (27%), Positives = 252/518 (48%), Gaps = 45/518 (8%)

Query: 109 ILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVET 168
           IL R R ++ A+  L  L             ++++G  KS  + GAL        R   +
Sbjct: 81  ILVRARMYDPARHILKEL-------------SLMSG--KSSFVFGALMTT----YRLCNS 121

Query: 169 NVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEM 228
           N   Y+ILI  + ++G    + EI+ RL+      P+V T N ++  + K G   E + +
Sbjct: 122 NPSVYDILIRVYLREGMIQDSLEIF-RLMGLYGFNPSVYTCNAILGSVVKSG---EDVSV 177

Query: 229 WDRMKKNEREK---DSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDG 285
           W  +K+  + K   D  T+   I+ LC  G+ E +  + ++M +SG     VTYN ++  
Sbjct: 178 WSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHW 237

Query: 286 FCRAGKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNAD 344
           +C+ G+ K   EL + M  KG   +V +YN+LI  L  + ++ +   +   +R++  + +
Sbjct: 238 YCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPN 297

Query: 345 STTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSL 404
             T+  LING                     EG++  A+ L+N M   G   N  T N+L
Sbjct: 298 EVTYNTLINGF------------------SNEGKVLIASQLLNEMLSFGLSPNHVTFNAL 339

Query: 405 MNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGW 464
           ++G I     + A+ +F  M  KG +P+ VSY  L++GLCK   F  A  F   M   G 
Sbjct: 340 IDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGV 399

Query: 465 KPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQ 524
               ITY+ +I+GLC++  +D A+ L  +  + G  PD+  Y+ LI+G C  G+ + A +
Sbjct: 400 CVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKE 459

Query: 525 LYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLC 584
           +   + +    PN + Y+TL+    + G   +A+ I+  ++ E    D  ++N+ +  LC
Sbjct: 460 IVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLC 519

Query: 585 SCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
              ++++A EF+      GILP T+++  L+    N+G
Sbjct: 520 KAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSG 557



 Score =  194 bits (493), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 140/602 (23%), Positives = 263/602 (43%), Gaps = 90/602 (14%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
           LC+  +F+ A+ F   +   G+     +Y  +I+GL K+G L  A+ + +EM + G++ +
Sbjct: 378 LCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPD 437

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
           +V Y+ LI+GF K G +  AKEI  R +    + PN + Y+ +I   C+ G   E + ++
Sbjct: 438 IVTYSALINGFCKVGRFKTAKEIVCR-IYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIY 496

Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
           + M      +D FT+   +  LCKAG V  AE   R M   GI  + V+++ +I+G+  +
Sbjct: 497 EAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNS 556

Query: 290 GKIKECFELWEVMGRKG------------------------------------CLNVVSY 313
           G+  + F +++ M + G                                     ++ V Y
Sbjct: 557 GEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMY 616

Query: 314 NILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEE 373
           N L+  + ++G + +A+S++  + +++   DS T+  LI+GLC+ G    AI    E E 
Sbjct: 617 NTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEA 676

Query: 374 GGE------------------GRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLE 415
            G                   G+         +MD  G   +  T N++++G+ +  K+E
Sbjct: 677 RGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIE 736

Query: 416 NAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLI 475
               L  EM  +   P + +YN L++G  K +    ++   + ++  G  PD +T   L+
Sbjct: 737 KTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLV 796

Query: 476 NGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYS-------- 527
            G+C+S  +++ LK+   F+ +G   D   +N+LI   C+ G++  A  L          
Sbjct: 797 LGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGIS 856

Query: 528 ---------------------------NMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEI 560
                                       M K+   P    Y  L++GL + GD   A  +
Sbjct: 857 LDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVV 916

Query: 561 WNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMN 620
              ++  ++ P  ++ +  ++ L  C +  +A   L   L   ++PT  ++  L+     
Sbjct: 917 KEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCK 976

Query: 621 NG 622
           NG
Sbjct: 977 NG 978



 Score =  191 bits (486), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 149/553 (26%), Positives = 247/553 (44%), Gaps = 56/553 (10%)

Query: 110  LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
            LC+  +  +A+ F+  +   G+ P+  S+  +ING   SG+ L A +VFDEM + G    
Sbjct: 518  LCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPT 577

Query: 170  VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
               Y  L+ G  K G ++R  E + + +       + V YN ++  +CK G   + + ++
Sbjct: 578  FFTYGSLLKGLCK-GGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLF 636

Query: 230  DRMKKNEREKDSFTYCSFIHGLCKAGN---------------------------VEG--- 259
              M +     DS+TY S I GLC+ G                            V+G   
Sbjct: 637  GEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFK 696

Query: 260  -----AERVYREMVES-GIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRK-GCLNVVS 312
                 A   +RE +++ G   D VT NAMIDG+ R GKI++  +L   MG + G  N+ +
Sbjct: 697  AGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTT 756

Query: 313  YNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILN--- 369
            YNIL+ G  +   V  +  ++  +       D  T   L+ G+C++  L   ++IL    
Sbjct: 757  YNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFI 816

Query: 370  ----EVEEG----------GEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLE 415
                EV+              G +  A  LV  M   G  L+  TC+++++   +  + +
Sbjct: 817  CRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQ 876

Query: 416  NAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLI 475
             +  +  EMS++G SP    Y  LINGLC+V     A+   +EM+     P  +  S ++
Sbjct: 877  ESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMV 936

Query: 476  NGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCV 535
              L +  K D A  L    L+    P +  +  L+H  C  G V +AL+L   M      
Sbjct: 937  RALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLK 996

Query: 536  PNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSC-SRMSDAFE 594
             +LV+YN L+ GL   GD   A E++  +  +    +  +Y   ++GL +  +  S A  
Sbjct: 997  LDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGLLARETAFSGADI 1056

Query: 595  FLNDALCRGILPT 607
             L D L RG + +
Sbjct: 1057 ILKDLLARGFITS 1069



 Score = 33.1 bits (74), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 38/92 (41%)

Query: 532 RNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSD 591
           R C  N   Y+ L+    + G    +LEI+  +      P + + N  L  +        
Sbjct: 117 RLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVS 176

Query: 592 AFEFLNDALCRGILPTTITWHILVRAVMNNGA 623
            + FL + L R I P   T++IL+  +   G+
Sbjct: 177 VWSFLKEMLKRKICPDVATFNILINVLCAEGS 208


>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
           OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
          Length = 629

 Score =  238 bits (608), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 171/621 (27%), Positives = 296/621 (47%), Gaps = 54/621 (8%)

Query: 3   ISAKRLLNL--LKAEKNPHTALALFD---SATREPGYAHSPHLFHHILRRLIDPKLVVHV 57
           ++AKRL     L+   NP T  + F+   S   E  +A +   +  ILR           
Sbjct: 7   LTAKRLFVHWNLQGIGNPPTVPSFFNLCGSGCWERSFASASGDYREILR----------- 55

Query: 58  SRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFE 117
           +R+ ++I++       D A+ +     K S P  ++  F ++          + +  +FE
Sbjct: 56  NRLSDIIKV-------DDAVDLFGDMVK-SRPFPSIVEFNKL-------LSAVAKMNKFE 100

Query: 118 KAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILI 177
                   +   G+  D+Y+Y   IN   +   L  ALAV  +M + G E ++V  + L+
Sbjct: 101 LVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLL 160

Query: 178 DGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNER 237
           +G+        A  + +++V E    P+  T+  +I+GL    +  E + + D+M +   
Sbjct: 161 NGYCHSKRISDAVALVDQMV-EMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGC 219

Query: 238 EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFE 297
           + D  TY + ++GLCK G+++ A  +  +M  + I  + V +N +ID  C+   ++   +
Sbjct: 220 QPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVD 279

Query: 298 LWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLC 356
           L+  M  KG   NVV+YN LI  L   G+  +A  +   + EK  N +  T   LI+   
Sbjct: 280 LFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFF 339

Query: 357 KNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLEN 416
           K                  EG+L +A  L   M +     +  T N L+NGF   ++L+ 
Sbjct: 340 K------------------EGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDE 381

Query: 417 AIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLIN 476
           A  +FK M  K C P + +YNTLING CK +R  +     +EM ++G   + +TY+ +I 
Sbjct: 382 AKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQ 441

Query: 477 GLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVP 536
           G  Q+   D A  +  Q +      D+  Y+IL+HGLCS GK++ AL ++  ++K     
Sbjct: 442 GFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMEL 501

Query: 537 NLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFL 596
           N+  YNT+++G+ K G   K  E W+      ++PD+++YN  + GLCS   + +A +  
Sbjct: 502 NIFIYNTMIEGMCKAG---KVGEAWDLFCSLSIKPDVVTYNTMISGLCSKRLLQEADDLF 558

Query: 597 NDALCRGILPTTITWHILVRA 617
                 G LP + T++ L+RA
Sbjct: 559 RKMKEDGTLPNSGTYNTLIRA 579



 Score =  221 bits (564), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 142/489 (29%), Positives = 245/489 (50%), Gaps = 37/489 (7%)

Query: 80  IQAYGKNSMPDKALDVFQRMNEIFGCEAGIL---------CRKRQFEKAKRFLNSLWEKG 130
           I  + + S    AL V  +M ++ G E  I+         C  ++   A   ++ + E G
Sbjct: 125 INCFCRRSQLSLALAVLAKMMKL-GYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183

Query: 131 LKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAK 190
            KPD +++ T+I+GL        A+A+ D+M +RG + ++V Y  +++G  K+GD   A 
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLAL 243

Query: 191 EIWERLVMETS-VYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIH 249
            +  +  ME + +  NVV +N +I+ LCK    +  ++++  M+      +  TY S I+
Sbjct: 244 NLLNK--MEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLIN 301

Query: 250 GLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-L 308
            LC  G    A R+   M+E  I  + VT+NA+ID F + GK+ E  +L E M ++    
Sbjct: 302 CLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDP 361

Query: 309 NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQIL 368
           + ++YN+LI G   + ++DEA  +++ +  K+C  +  T+  LING CK           
Sbjct: 362 DTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCK--------- 412

Query: 369 NEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKG 428
                    R+ D   L   M + G   N  T  +++ GF QA   ++A  +FK+M    
Sbjct: 413 ---------RVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNR 463

Query: 429 CSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMAL 488
               +++Y+ L++GLC   +   A    K + +   + ++  Y+ +I G+C++ K+  A 
Sbjct: 464 VPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAW 523

Query: 489 KLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGL 548
            L C    K   PDV  YN +I GLCS   +++A  L+  MK+   +PN  TYNTL+   
Sbjct: 524 DLFCSLSIK---PDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRAN 580

Query: 549 FKTGDCDKA 557
            +  DCD+A
Sbjct: 581 LR--DCDRA 587



 Score =  183 bits (464), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 138/490 (28%), Positives = 230/490 (46%), Gaps = 40/490 (8%)

Query: 2   VISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRIL 61
           +++   LLN     K    A+AL D    E GY      F  ++  L    L    S  +
Sbjct: 153 IVTLSSLLNGYCHSKRISDAVALVDQMV-EMGYKPDTFTFTTLIHGLF---LHNKASEAV 208

Query: 62  ELIE--IQKCYCPEDVAL-SVIQAYGKNSMPDKALDVFQRMNE--------IFGCEAGIL 110
            L++  +Q+   P+ V   +V+    K    D AL++  +M          IF      L
Sbjct: 209 ALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSL 268

Query: 111 CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNV 170
           C+ R  E A      +  KG++P+V +Y ++IN L   G    A  +   M E+ +  NV
Sbjct: 269 CKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNV 328

Query: 171 VCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWD 230
           V +N LID FFK+G  + A+++ E ++ + S+ P+ +TYN++ING C   R DE  +M+ 
Sbjct: 329 VTFNALIDAFFKEGKLVEAEKLHEEMI-QRSIDPDTITYNLLINGFCMHNRLDEAKQMFK 387

Query: 231 RMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAG 290
            M   +   +  TY + I+G CK   VE    ++REM + G+  + VTY  +I GF +AG
Sbjct: 388 FMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAG 447

Query: 291 KIKECFELWEVM-GRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHG 349
                  +++ M   +   ++++Y+IL+ GL   GK+D A+ I++ L++     +   + 
Sbjct: 448 DCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYN 507

Query: 350 VLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFI 409
            +I G+CK G + +A  +   +                       K +  T N++++G  
Sbjct: 508 TMIEGMCKAGKVGEAWDLFCSL---------------------SIKPDVVTYNTMISGLC 546

Query: 410 QASKLENAIFLFKEMSRKGCSPTVVSYNTLING-LCKVERFGEAYSFVKEMLEKGWKPDM 468
               L+ A  LF++M   G  P   +YNTLI   L   +R   A   +KEM   G+  D 
Sbjct: 547 SKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASA-ELIKEMRSSGFVGDA 605

Query: 469 ITYSLLINGL 478
            T SL+ N L
Sbjct: 606 STISLVTNML 615



 Score =  181 bits (460), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 210/416 (50%), Gaps = 24/416 (5%)

Query: 117 EKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNIL 176
            +A   ++ + ++G +PD+ +YGTV+NGL K GD+  AL + ++M    ++ NVV +N +
Sbjct: 205 SEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTI 264

Query: 177 IDGFFKKGDYMRAKEIWERLVMET-SVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKN 235
           ID   K      A +++    MET  + PNVVTYN +IN LC  GR+ +   +   M + 
Sbjct: 265 IDSLCKYRHVEVAVDLFTE--METKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEK 322

Query: 236 EREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKEC 295
           +   +  T+ + I    K G +  AE+++ EM++  I  D +TYN +I+GFC   ++ E 
Sbjct: 323 KINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEA 382

Query: 296 FELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLING 354
            ++++ M  K CL N+ +YN LI G  +  +V++ + ++  + ++    ++ T+  +I G
Sbjct: 383 KQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQG 442

Query: 355 LCKNGYLNKAIQILNEVEEG-----------------GEGRLADAASLVNRMDKHGCKLN 397
             + G  + A  +  ++                      G+L  A  +   + K   +LN
Sbjct: 443 FFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELN 502

Query: 398 AYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVK 457
            +  N+++ G  +A K+  A  LF  +S K   P VV+YNT+I+GLC      EA    +
Sbjct: 503 IFIYNTMIEGMCKAGKVGEAWDLFCSLSIK---PDVVTYNTMISGLCSKRLLQEADDLFR 559

Query: 458 EMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGL 513
           +M E G  P+  TY+ LI    +      + +L  +    GF  D +  +++ + L
Sbjct: 560 KMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTISLVTNML 615



 Score =  163 bits (413), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 199/413 (48%), Gaps = 19/413 (4%)

Query: 211 VMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVES 270
           ++ N L    + D+ ++++  M K+        +   +  + K    E    +  +M   
Sbjct: 53  ILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTL 112

Query: 271 GIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEA 329
           GI  D  TY+  I+ FCR  ++     +   M + G   ++V+ + L+ G   + ++ +A
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 172

Query: 330 ISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRM 389
           +++ + + E     D+ T   LI+GL  +   NKA               ++A +LV++M
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHGLFLH---NKA---------------SEAVALVDQM 214

Query: 390 DKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERF 449
            + GC+ +  T  +++NG  +   ++ A+ L  +M        VV +NT+I+ LCK    
Sbjct: 215 VQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHV 274

Query: 450 GEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNIL 509
             A     EM  KG +P+++TY+ LIN LC   +   A +L    L+K   P+V  +N L
Sbjct: 275 EVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNAL 334

Query: 510 IHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERL 569
           I      GK+ +A +L+  M +R+  P+ +TYN L++G       D+A +++  ++ +  
Sbjct: 335 IDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDC 394

Query: 570 RPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
            P+I +YN  + G C C R+ D  E   +   RG++  T+T+  +++     G
Sbjct: 395 LPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAG 447



 Score =  108 bits (271), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 151/332 (45%), Gaps = 27/332 (8%)

Query: 5   AKRLL-NLLKAEKNPH--TALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRIL 61
           A RLL N+L+ + NP+  T  AL D+  +E     +  L   +++R IDP  + +   I 
Sbjct: 312 ASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLI- 370

Query: 62  ELIEIQKCYCPEDVALSVIQAY----GKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFE 117
                   +C  +      Q +     K+ +P+      Q  N +        C+ ++ E
Sbjct: 371 ------NGFCMHNRLDEAKQMFKFMVSKDCLPN-----IQTYNTLING----FCKCKRVE 415

Query: 118 KAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILI 177
                   + ++GL  +  +Y T+I G  ++GD   A  VF +M    V T+++ Y+IL+
Sbjct: 416 DGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILL 475

Query: 178 DGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNER 237
            G    G    A  I++ L  ++ +  N+  YN MI G+CK G+  E    WD       
Sbjct: 476 HGLCSYGKLDTALVIFKYL-QKSEMELNIFIYNTMIEGMCKAGKVGEA---WDLFCSLSI 531

Query: 238 EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFE 297
           + D  TY + I GLC    ++ A+ ++R+M E G   ++ TYN +I    R        E
Sbjct: 532 KPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAE 591

Query: 298 LWEVMGRKGCLNVVSYNILIRGLLENGKVDEA 329
           L + M   G +   S   L+  +L +G++D++
Sbjct: 592 LIKEMRSSGFVGDASTISLVTNMLHDGRLDKS 623


>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
           SV=1
          Length = 987

 Score =  236 bits (602), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 157/555 (28%), Positives = 268/555 (48%), Gaps = 22/555 (3%)

Query: 61  LELIEIQKCYCPEDVALS-VIQAYGKNSMPDKALDVFQRMNEIFGC------EAGILC-- 111
           L L+E +  + P+ V  + +I    + S+ ++A+D   RM     C       + +LC  
Sbjct: 290 LTLVETEN-FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRAT-SCLPNVVTYSTLLCGC 347

Query: 112 -RKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNV 170
             K+Q  + KR LN +  +G  P    + ++++    SGD   A  +  +M + G     
Sbjct: 348 LNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGY 407

Query: 171 VCYNILIDGFFKKGDYMR------AKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDE 224
           V YNILI       D +       A++ +  + +   V  N +  +     LC  G++++
Sbjct: 408 VVYNILIGSICGDKDSLNCDLLDLAEKAYSEM-LAAGVVLNKINVSSFTRCLCSAGKYEK 466

Query: 225 CLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMID 284
              +   M       D+ TY   ++ LC A  +E A  ++ EM   G+  D  TY  M+D
Sbjct: 467 AFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVD 526

Query: 285 GFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNA 343
            FC+AG I++  + +  M   GC  NVV+Y  LI   L+  KV  A  ++E +  + C  
Sbjct: 527 SFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLP 586

Query: 344 DSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNS 403
           +  T+  LI+G CK G + KA QI   +   G   + D      + D +  + N  T  +
Sbjct: 587 NIVTYSALIDGHCKAGQVEKACQIFERM--CGSKDVPDVDMYFKQYDDNSERPNVVTYGA 644

Query: 404 LMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKG 463
           L++GF ++ ++E A  L   MS +GC P  + Y+ LI+GLCKV +  EA     EM E G
Sbjct: 645 LLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHG 704

Query: 464 WKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDAL 523
           +   + TYS LI+   + K+ D+A K+  + L+    P+V +Y  +I GLC  GK ++A 
Sbjct: 705 FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAY 764

Query: 524 QLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGL 583
           +L   M+++ C PN+VTY  ++DG    G  +  LE+   +  + + P+ ++Y + +   
Sbjct: 765 KLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHC 824

Query: 584 CSCSRMSDAFEFLND 598
           C    +  A   L +
Sbjct: 825 CKNGALDVAHNLLEE 839



 Score =  209 bits (532), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 144/537 (26%), Positives = 244/537 (45%), Gaps = 42/537 (7%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
           LC    FE+A  FLN +      P+V +Y T++ G +    L     V + M   G   +
Sbjct: 312 LCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPS 371

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLC------KCGRFD 223
              +N L+  +   GD+  A ++ +++V +    P  V YN++I  +C       C   D
Sbjct: 372 PKIFNSLVHAYCTSGDHSYAYKLLKKMV-KCGHMPGYVVYNILIGSICGDKDSLNCDLLD 430

Query: 224 ECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMI 283
              + +  M       +     SF   LC AG  E A  V REM+  G   D  TY+ ++
Sbjct: 431 LAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVL 490

Query: 284 DGFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCN 342
           +  C A K++  F L+E M R G + +V +Y I++    + G +++A   +  +RE  C 
Sbjct: 491 NYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCT 550

Query: 343 ADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCN 402
            +  T+  LI+   K     K +   NE              L   M   GC  N  T +
Sbjct: 551 PNVVTYTALIHAYLKA----KKVSYANE--------------LFETMLSEGCLPNIVTYS 592

Query: 403 SLMNGFIQASKLENA--IF--------------LFKEMSRKGCSPTVVSYNTLINGLCKV 446
           +L++G  +A ++E A  IF               FK+       P VV+Y  L++G CK 
Sbjct: 593 ALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKS 652

Query: 447 ERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMY 506
            R  EA   +  M  +G +P+ I Y  LI+GLC+  K+D A ++  +  + GF   +  Y
Sbjct: 653 HRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTY 712

Query: 507 NILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE 566
           + LI       + + A ++ S M + +C PN+V Y  ++DGL K G  D+A ++   + E
Sbjct: 713 SSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEE 772

Query: 567 ERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNGA 623
           +  +P++++Y   + G     ++    E L     +G+ P  +T+ +L+     NGA
Sbjct: 773 KGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGA 829



 Score =  202 bits (513), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 160/628 (25%), Positives = 274/628 (43%), Gaps = 127/628 (20%)

Query: 59  RILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRM------------------- 99
           R+L ++ ++ CY    +  S++ AY  +     A  + ++M                   
Sbjct: 358 RVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSI 417

Query: 100 ---NEIFGCE--------------AGI-------------LCRKRQFEKAKRFLNSLWEK 129
               +   C+              AG+             LC   ++EKA   +  +  +
Sbjct: 418 CGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQ 477

Query: 130 GLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA 189
           G  PD  +Y  V+N L  +  +  A  +F+EM   G+  +V  Y I++D F K G   +A
Sbjct: 478 GFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQA 537

Query: 190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIH 249
           ++ W   + E    PNVVTY  +I+   K  +     E+++ M       +  TY + I 
Sbjct: 538 RK-WFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALID 596

Query: 250 GLCKAGNVEGAERVYREMVESGIFVD----------------AVTYNAMIDGFCRAGKIK 293
           G CKAG VE A +++  M  S    D                 VTY A++DGFC++ +++
Sbjct: 597 GHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVE 656

Query: 294 ECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLI 352
           E  +L + M  +GC  N + Y+ LI GL + GK+DEA  +   + E    A   T+  LI
Sbjct: 657 EARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLI 716

Query: 353 NGLCKNGYLNKAIQILNEVEEGG-----------------EGRLADAASLVNRMDKHGCK 395
           +   K    + A ++L+++ E                    G+  +A  L+  M++ GC+
Sbjct: 717 DRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQ 776

Query: 396 LNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSF 455
            N  T  ++++GF    K+E  + L + M  KG +P  V+Y  LI+  CK      A++ 
Sbjct: 777 PNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNL 836

Query: 456 VKEMLEKGWK---------------------------------PDMITYSLLINGLCQSK 482
           ++EM +  W                                  P +  Y LLI+ L +++
Sbjct: 837 LEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQ 896

Query: 483 KIDMALKLCCQFLQKGFTPDVTM------YNILIHGLCSAGKVEDALQLYSNMKKRNCVP 536
           +++MAL+L    L++  T   T+      YN LI  LC A KVE A QL+S M K+  +P
Sbjct: 897 RLEMALRL----LEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIP 952

Query: 537 NLVTYNTLMDGLFKTGDCDKALEIWNHI 564
            + ++ +L+ GLF+     +AL + + I
Sbjct: 953 EMQSFCSLIKGLFRNSKISEALLLLDFI 980



 Score =  154 bits (389), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/470 (25%), Positives = 196/470 (41%), Gaps = 64/470 (13%)

Query: 165 GVETNVVCYNILIDGFFKKGDYMRAKEIWERLVME-TSVYPNVVTYNVMINGLCKCGRFD 223
           G +     YN L+D   +  D    +E  +++  +   V+   +  NV++   C+ G F 
Sbjct: 160 GYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFGEFL--NVLVRKHCRNGSFS 217

Query: 224 ECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMI 283
             LE   R+K         TY   I    KA  ++ A  ++REM  + + +D  T     
Sbjct: 218 IALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFA 277

Query: 284 DGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNA 343
              C+ GK +E   L E        + V Y  LI GL E    +EA+     +R  +C  
Sbjct: 278 YSLCKVGKWREALTLVET--ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLP 335

Query: 344 DSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNS 403
           +  T+  L   LC  G LNK              +L     ++N M   GC  +    NS
Sbjct: 336 NVVTYSTL---LC--GCLNKK-------------QLGRCKRVLNMMMMEGCYPSPKIFNS 377

Query: 404 LMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLING--------------------- 442
           L++ +  +     A  L K+M + G  P  V YN LI                       
Sbjct: 378 LVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYS 437

Query: 443 --------------------LCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSK 482
                               LC   ++ +A+S ++EM+ +G+ PD  TYS ++N LC + 
Sbjct: 438 EMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNAS 497

Query: 483 KIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYN 542
           K+++A  L  +  + G   DV  Y I++   C AG +E A + ++ M++  C PN+VTY 
Sbjct: 498 KMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYT 557

Query: 543 TLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDA 592
            L+    K      A E++  +L E   P+I++Y+  + G C   ++  A
Sbjct: 558 ALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKA 607


>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
           OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
          Length = 729

 Score =  234 bits (596), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 139/500 (27%), Positives = 245/500 (49%), Gaps = 22/500 (4%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
           LC+  + EK   FL+ + EKG+ PD+ +Y T+I+     G +  A  + + M  +G    
Sbjct: 245 LCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPG 304

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
           V  YN +I+G  K G Y RAKE++  + + + + P+  TY  ++   CK G   E  +++
Sbjct: 305 VYTYNTVINGLCKHGKYERAKEVFAEM-LRSGLSPDSTTYRSLLMEACKKGDVVETEKVF 363

Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
             M+  +   D   + S +    ++GN++ A   +  + E+G+  D V Y  +I G+CR 
Sbjct: 364 SDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRK 423

Query: 290 GKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348
           G I     L   M ++GC ++VV+YN ++ GL +   + EA  ++  + E+    DS T 
Sbjct: 424 GMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTL 483

Query: 349 GVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGF 408
            +LI+G CK G L  A++                  L  +M +   +L+  T N+L++GF
Sbjct: 484 TILIDGHCKLGNLQNAME------------------LFQKMKEKRIRLDVVTYNTLLDGF 525

Query: 409 IQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM 468
            +   ++ A  ++ +M  K   PT +SY+ L+N LC      EA+    EM+ K  KP +
Sbjct: 526 GKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTV 585

Query: 469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSN 528
           +  + +I G C+S           + + +GF PD   YN LI+G      +  A  L   
Sbjct: 586 MICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKK 645

Query: 529 MKKRN--CVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSC 586
           M++     VP++ TYN+++ G  +     +A  +   ++E  + PD  +Y   + G  S 
Sbjct: 646 MEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQ 705

Query: 587 SRMSDAFEFLNDALCRGILP 606
             +++AF   ++ L RG  P
Sbjct: 706 DNLTEAFRIHDEMLQRGFSP 725



 Score =  229 bits (584), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 145/524 (27%), Positives = 252/524 (48%), Gaps = 21/524 (4%)

Query: 112 RKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVV 171
           + R+  +A      L  KG    + +   +I  LV+ G +  A  V+ E+   GV  NV 
Sbjct: 177 QARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVY 236

Query: 172 CYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDR 231
             NI+++   K G   +      + V E  VYP++VTYN +I+     G  +E  E+ + 
Sbjct: 237 TLNIMVNALCKDGKMEKVGTFLSQ-VQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNA 295

Query: 232 MKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGK 291
           M         +TY + I+GLCK G  E A+ V+ EM+ SG+  D+ TY +++   C+ G 
Sbjct: 296 MPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGD 355

Query: 292 IKECFELWEVM-GRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGV 350
           + E  +++  M  R    ++V ++ ++     +G +D+A+  +  ++E     D+  + +
Sbjct: 356 VVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTI 415

Query: 351 LINGLCKNGYLNKAIQILNEVEEGG-----------------EGRLADAASLVNRMDKHG 393
           LI G C+ G ++ A+ + NE+ + G                    L +A  L N M +  
Sbjct: 416 LIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERA 475

Query: 394 CKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAY 453
              ++YT   L++G  +   L+NA+ LF++M  K     VV+YNTL++G  KV     A 
Sbjct: 476 LFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAK 535

Query: 454 SFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGL 513
               +M+ K   P  I+YS+L+N LC    +  A ++  + + K   P V + N +I G 
Sbjct: 536 EIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGY 595

Query: 514 CSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEER--LRP 571
           C +G   D       M     VP+ ++YNTL+ G  +  +  KA  +   + EE+  L P
Sbjct: 596 CRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVP 655

Query: 572 DIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILV 615
           D+ +YN  L G C  ++M +A   L   + RG+ P   T+  ++
Sbjct: 656 DVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMI 699



 Score =  214 bits (544), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 124/454 (27%), Positives = 227/454 (50%), Gaps = 31/454 (6%)

Query: 78  SVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI---------LCRKRQFEKAKRFLNSLWE 128
           ++I AY    + ++A ++   M    G   G+         LC+  ++E+AK     +  
Sbjct: 275 TLISAYSSKGLMEEAFELMNAMPGK-GFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLR 333

Query: 129 KGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMR 188
            GL PD  +Y +++    K GD++    VF +M  R V  ++VC++ ++  F + G+  +
Sbjct: 334 SGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDK 393

Query: 189 AKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFI 248
           A  ++   V E  + P+ V Y ++I G C+ G     + + + M +     D  TY + +
Sbjct: 394 AL-MYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTIL 452

Query: 249 HGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC- 307
           HGLCK   +  A++++ EM E  +F D+ T   +IDG C+ G ++   EL++ M  K   
Sbjct: 453 HGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIR 512

Query: 308 LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQI 367
           L+VV+YN L+ G  + G +D A  IW  +  K       ++ +L+N LC  G+L +A ++
Sbjct: 513 LDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRV 572

Query: 368 LNEVEEGG-----------------EGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQ 410
            +E+                      G  +D  S + +M   G   +  + N+L+ GF++
Sbjct: 573 WDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVR 632

Query: 411 ASKLENAIFLFKEMSRK--GCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM 468
              +  A  L K+M  +  G  P V +YN++++G C+  +  EA   +++M+E+G  PD 
Sbjct: 633 EENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDR 692

Query: 469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPD 502
            TY+ +ING      +  A ++  + LQ+GF+PD
Sbjct: 693 STYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726



 Score =  203 bits (516), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 142/547 (25%), Positives = 254/547 (46%), Gaps = 38/547 (6%)

Query: 98  RMNEIFGCEAGILCRKRQFEKAKRFLNSL--WEKGLKPDVYSYGTVINGLVKSGDLLGAL 155
           R+N +   E    CR       +RF++ L       K    S   +I+ LV+SG L  A 
Sbjct: 75  RLNPLAVVEVLYRCRN-DLTLGQRFVDQLGFHFPNFKHTSLSLSAMIHILVRSGRLSDAQ 133

Query: 156 AVFDEMFERGVETNVVCYNILIDGFFKKGD-----------YMRAKEIWE-----RLVME 199
           +    M  R   + +   N L   F   G            Y++A+++ E      L+  
Sbjct: 134 SCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRS 193

Query: 200 TSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEG 259
                ++   N +I  L + G  +    ++  + ++    + +T    ++ LCK G +E 
Sbjct: 194 KGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEK 253

Query: 260 AERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKG-CLNVVSYNILIR 318
                 ++ E G++ D VTYN +I  +   G ++E FEL   M  KG    V +YN +I 
Sbjct: 254 VGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVIN 313

Query: 319 GLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGR 378
           GL ++GK + A  ++  +     + DSTT+  L+   CK                  +G 
Sbjct: 314 GLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACK------------------KGD 355

Query: 379 LADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNT 438
           + +   + + M       +    +S+M+ F ++  L+ A+  F  +   G  P  V Y  
Sbjct: 356 VVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTI 415

Query: 439 LINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKG 498
           LI G C+      A +   EML++G   D++TY+ +++GLC+ K +  A KL  +  ++ 
Sbjct: 416 LIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERA 475

Query: 499 FTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKAL 558
             PD     ILI G C  G +++A++L+  MK++    ++VTYNTL+DG  K GD D A 
Sbjct: 476 LFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAK 535

Query: 559 EIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAV 618
           EIW  ++ + + P  ISY+I +  LCS   +++AF   ++ + + I PT +  + +++  
Sbjct: 536 EIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGY 595

Query: 619 MNNGAST 625
             +G ++
Sbjct: 596 CRSGNAS 602


>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
           OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
          Length = 577

 Score =  233 bits (595), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 134/465 (28%), Positives = 245/465 (52%), Gaps = 22/465 (4%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
            CR+ Q   A   L  + + G +P + +  +++NG      +  A+A+ D+M E G   +
Sbjct: 130 FCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPD 189

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
            + +  LI G F       A  + +R+V +    PN+VTY V++NGLCK G  D    + 
Sbjct: 190 TITFTTLIHGLFLHNKASEAVALVDRMV-QRGCQPNLVTYGVVVNGLCKRGDIDLAFNLL 248

Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
           ++M+  + E +   Y + I  LCK  + + A  ++ EM   G+  + +TY+++I   C  
Sbjct: 249 NKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNY 308

Query: 290 GKIKECFELW-EVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348
            +  +   L  +++ RK   NVV++N LI   ++ GK+ EA  +++ + +++ + D  T+
Sbjct: 309 ERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 368

Query: 349 GVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGF 408
             LING C +                   RL +A  +   M    C  N  T N+L+NGF
Sbjct: 369 SSLINGFCMHD------------------RLDEAKHMFELMISKDCFPNVVTYNTLINGF 410

Query: 409 IQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM 468
            +A +++  + LF+EMS++G     V+Y TLI+G  +      A    K+M+  G  P++
Sbjct: 411 CKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNI 470

Query: 469 ITYSLLINGLCQSKKIDMALKLCCQFLQKG-FTPDVTMYNILIHGLCSAGKVEDALQLYS 527
           +TY+ L++GLC++ K++ A+ +  ++LQ+    P +  YNI+I G+C AGKVED   L+ 
Sbjct: 471 MTYNTLLDGLCKNGKLEKAM-VVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFC 529

Query: 528 NMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD 572
           ++  +   P+++ YNT++ G  + G  ++A  ++  + E+   PD
Sbjct: 530 SLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPD 574



 Score =  233 bits (594), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 133/491 (27%), Positives = 247/491 (50%), Gaps = 20/491 (4%)

Query: 133 PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEI 192
           P ++ +  +++ + K       +++ ++M   G+  N+  YNILI+ F ++     A  +
Sbjct: 83  PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 142

Query: 193 WERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLC 252
             ++ M+    P++VT + ++NG C   R  + + + D+M +     D+ T+ + IHGL 
Sbjct: 143 LGKM-MKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLF 201

Query: 253 KAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVM-GRKGCLNVV 311
                  A  +   MV+ G   + VTY  +++G C+ G I   F L   M   K   NVV
Sbjct: 202 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVV 261

Query: 312 SYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEV 371
            Y+ +I  L +    D+A++++  +  K    +  T+  LI+ LC               
Sbjct: 262 IYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCN-------------- 307

Query: 372 EEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSP 431
                 R +DA+ L++ M +     N  T N+L++ F++  KL  A  L+ EM ++   P
Sbjct: 308 ----YERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDP 363

Query: 432 TVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLC 491
            + +Y++LING C  +R  EA    + M+ K   P+++TY+ LING C++K+ID  ++L 
Sbjct: 364 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELF 423

Query: 492 CQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKT 551
            +  Q+G   +   Y  LIHG   A   ++A  ++  M      PN++TYNTL+DGL K 
Sbjct: 424 REMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKN 483

Query: 552 GDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITW 611
           G  +KA+ ++ ++   ++ P I +YNI ++G+C   ++ D ++       +G+ P  I +
Sbjct: 484 GKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIY 543

Query: 612 HILVRAVMNNG 622
           + ++      G
Sbjct: 544 NTMISGFCRKG 554



 Score =  186 bits (471), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 134/492 (27%), Positives = 233/492 (47%), Gaps = 45/492 (9%)

Query: 1   MVISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVV----- 55
           +VIS    +  L    N +T   L +   R    + +  L   +++   +P +V      
Sbjct: 103 LVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLL 162

Query: 56  ----HVSRILELIE-----IQKCYCPEDVALS-VIQAYGKNSMPDKALDVFQRMNEIFGC 105
               H  RI + +      ++  Y P+ +  + +I     ++   +A+ +  RM +  GC
Sbjct: 163 NGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQ-RGC 221

Query: 106 EAGI---------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALA 156
           +  +         LC++   + A   LN +    ++ +V  Y TVI+ L K      AL 
Sbjct: 222 QPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALN 281

Query: 157 VFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGL 216
           +F EM  +GV  NV+ Y+ LI        +  A  +   ++ E  + PNVVT+N +I+  
Sbjct: 282 LFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMI-ERKINPNVVTFNALIDAF 340

Query: 217 CKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDA 276
            K G+  E  +++D M K   + D FTY S I+G C    ++ A+ ++  M+    F + 
Sbjct: 341 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNV 400

Query: 277 VTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWEL 335
           VTYN +I+GFC+A +I E  EL+  M ++G + N V+Y  LI G  +    D A  +++ 
Sbjct: 401 VTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQ 460

Query: 336 LREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCK 395
           +     + +  T+  L++GLCKNG L KA+ +   ++              ++M+     
Sbjct: 461 MVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR-------------SKMEP---- 503

Query: 396 LNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSF 455
              YT N ++ G  +A K+E+   LF  +S KG  P V+ YNT+I+G C+     EA + 
Sbjct: 504 -TIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADAL 562

Query: 456 VKEMLEKGWKPD 467
            ++M E G  PD
Sbjct: 563 FRKMREDGPLPD 574



 Score =  147 bits (371), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 154/314 (49%), Gaps = 45/314 (14%)

Query: 78  SVIQAYGKNSMPDKALDVFQRMNE--------IFGCEAGILCRKRQFEKAKRFLNSLWEK 129
           +VI +  K    D AL++F  M           +      LC   ++  A R L+ + E+
Sbjct: 265 TVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIER 324

Query: 130 GLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA 189
            + P+V ++  +I+  VK G L+ A  ++DEM +R ++ ++  Y+ LI+GF        A
Sbjct: 325 KINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 384

Query: 190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIH 249
           K ++E L++    +PNVVTYN +ING CK  R DE +E++  M +     ++ TY + IH
Sbjct: 385 KHMFE-LMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIH 443

Query: 250 GLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGR----- 304
           G  +A + + A+ V+++MV  G+  + +TYN ++DG C+ GK+++   ++E + R     
Sbjct: 444 GFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP 503

Query: 305 ------------------------------KGC-LNVVSYNILIRGLLENGKVDEAISIW 333
                                         KG   +V+ YN +I G    G  +EA +++
Sbjct: 504 TIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALF 563

Query: 334 ELLREKNCNADSTT 347
             +RE     DS T
Sbjct: 564 RKMREDGPLPDSGT 577



 Score =  107 bits (267), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 132/277 (47%), Gaps = 16/277 (5%)

Query: 5   AKRLL-NLLKAEKNPH--TALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRIL 61
           A RLL ++++ + NP+  T  AL D+  +E     +  L+  +++R IDP +  + S I 
Sbjct: 314 ASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLI- 372

Query: 62  ELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKR 121
                   +C  D        +      D   +V      I G      C+ ++ ++   
Sbjct: 373 ------NGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLING-----FCKAKRIDEGVE 421

Query: 122 FLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFF 181
               + ++GL  +  +Y T+I+G  ++ D   A  VF +M   GV  N++ YN L+DG  
Sbjct: 422 LFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLC 481

Query: 182 KKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDS 241
           K G   +A  ++E L   + + P + TYN+MI G+CK G+ ++  +++  +     + D 
Sbjct: 482 KNGKLEKAMVVFEYL-QRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDV 540

Query: 242 FTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVT 278
             Y + I G C+ G  E A+ ++R+M E G   D+ T
Sbjct: 541 IIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577


>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
           mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
           SV=1
          Length = 602

 Score =  233 bits (594), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 128/474 (27%), Positives = 250/474 (52%), Gaps = 20/474 (4%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
           + R +QF     F   L   G+  ++Y+   +IN   +      A +V  ++ + G E +
Sbjct: 98  IARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPD 157

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
              +N LI G F +G    A  + +R+V E    P+VVTYN ++NG+C+ G     L++ 
Sbjct: 158 TTTFNTLIKGLFLEGKVSEAVVLVDRMV-ENGCQPDVVTYNSIVNGICRSGDTSLALDLL 216

Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
            +M++   + D FTY + I  LC+ G ++ A  +++EM   GI    VTYN+++ G C+A
Sbjct: 217 RKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKA 276

Query: 290 GKIKE-CFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348
           GK  +    L +++ R+   NV+++N+L+   ++ GK+ EA  +++ +  +  + +  T+
Sbjct: 277 GKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITY 336

Query: 349 GVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGF 408
             L++G C                   + RL++A ++++ M ++ C  +  T  SL+ G+
Sbjct: 337 NTLMDGYCM------------------QNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGY 378

Query: 409 IQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM 468
               ++++ + +F+ +S++G     V+Y+ L+ G C+  +   A    +EM+  G  PD+
Sbjct: 379 CMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDV 438

Query: 469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSN 528
           +TY +L++GLC + K++ AL++     +      + MY  +I G+C  GKVEDA  L+ +
Sbjct: 439 MTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCS 498

Query: 529 MKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKG 582
           +  +   PN++TY  ++ GL K G   +A  +   + E+   P+  +YN  ++ 
Sbjct: 499 LPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 552



 Score =  230 bits (587), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 132/471 (28%), Positives = 238/471 (50%), Gaps = 20/471 (4%)

Query: 154 ALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMI 213
           A+A+F EM       ++V ++       +   +    +  ++L +   +  N+ T N+MI
Sbjct: 72  AIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELN-GIAHNIYTLNIMI 130

Query: 214 NGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIF 273
           N  C+C +      +  ++ K   E D+ T+ + I GL   G V  A  +   MVE+G  
Sbjct: 131 NCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQ 190

Query: 274 VDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISI 332
            D VTYN++++G CR+G      +L   M  +    +V +Y+ +I  L  +G +D AIS+
Sbjct: 191 PDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISL 250

Query: 333 WELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKH 392
           ++ +  K   +   T+  L+ GLCK G  N                  D A L+  M   
Sbjct: 251 FKEMETKGIKSSVVTYNSLVRGLCKAGKWN------------------DGALLLKDMVSR 292

Query: 393 GCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEA 452
               N  T N L++ F++  KL+ A  L+KEM  +G SP +++YNTL++G C   R  EA
Sbjct: 293 EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEA 352

Query: 453 YSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHG 512
            + +  M+     PD++T++ LI G C  K++D  +K+     ++G   +   Y+IL+ G
Sbjct: 353 NNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQG 412

Query: 513 LCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD 572
            C +GK++ A +L+  M     +P+++TY  L+DGL   G  +KALEI+  + + ++   
Sbjct: 413 FCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLG 472

Query: 573 IISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNGA 623
           I+ Y   ++G+C   ++ DA+       C+G+ P  +T+ +++  +   G+
Sbjct: 473 IVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGS 523



 Score =  228 bits (582), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 140/494 (28%), Positives = 249/494 (50%), Gaps = 20/494 (4%)

Query: 133 PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEI 192
           P +  +    + + ++      L    ++   G+  N+   NI+I+ F +      A  +
Sbjct: 86  PSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 145

Query: 193 WERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLC 252
             + VM+    P+  T+N +I GL   G+  E + + DRM +N  + D  TY S ++G+C
Sbjct: 146 LGK-VMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGIC 204

Query: 253 KAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-LNVV 311
           ++G+   A  + R+M E  +  D  TY+ +ID  CR G I     L++ M  KG   +VV
Sbjct: 205 RSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVV 264

Query: 312 SYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEV 371
           +YN L+RGL + GK ++   + + +  +    +  T  VL++   K              
Sbjct: 265 TYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVK-------------- 310

Query: 372 EEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSP 431
               EG+L +A  L   M   G   N  T N+LM+G+   ++L  A  +   M R  CSP
Sbjct: 311 ----EGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSP 366

Query: 432 TVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLC 491
            +V++ +LI G C V+R  +     + + ++G   + +TYS+L+ G CQS KI +A +L 
Sbjct: 367 DIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELF 426

Query: 492 CQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKT 551
            + +  G  PDV  Y IL+ GLC  GK+E AL+++ +++K      +V Y T+++G+ K 
Sbjct: 427 QEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKG 486

Query: 552 GDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITW 611
           G  + A  ++  +  + ++P++++Y + + GLC    +S+A   L      G  P   T+
Sbjct: 487 GKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTY 546

Query: 612 HILVRAVMNNGAST 625
           + L+RA + +G  T
Sbjct: 547 NTLIRAHLRDGDLT 560



 Score =  194 bits (494), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/458 (26%), Positives = 226/458 (49%), Gaps = 20/458 (4%)

Query: 119 AKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILID 178
           A   L  + + G +PD  ++ T+I GL   G +  A+ + D M E G + +VV YN +++
Sbjct: 142 AYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVN 201

Query: 179 GFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNERE 238
           G  + GD   A ++  ++  E +V  +V TY+ +I+ LC+ G  D  + ++  M+    +
Sbjct: 202 GICRSGDTSLALDLLRKM-EERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIK 260

Query: 239 KDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFEL 298
               TY S + GLCKAG       + ++MV   I  + +T+N ++D F + GK++E  EL
Sbjct: 261 SSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANEL 320

Query: 299 WEVMGRKG-CLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCK 357
           ++ M  +G   N+++YN L+ G     ++ EA ++ +L+    C+ D  T   LI G C 
Sbjct: 321 YKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCM 380

Query: 358 NGYLNKAIQILNEVEEGG-----------------EGRLADAASLVNRMDKHGCKLNAYT 400
              ++  +++   + + G                  G++  A  L   M  HG   +  T
Sbjct: 381 VKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMT 440

Query: 401 CNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEML 460
              L++G     KLE A+ +F+++ +      +V Y T+I G+CK  +  +A++    + 
Sbjct: 441 YGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLP 500

Query: 461 EKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVE 520
            KG KP+++TY+++I+GLC+   +  A  L  +  + G  P+   YN LI      G + 
Sbjct: 501 CKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLT 560

Query: 521 DALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKAL 558
            + +L   MK      +  +   ++D L  +G+ DK+ 
Sbjct: 561 ASAKLIEEMKSCGFSADASSIKMVIDMLL-SGELDKSF 597



 Score =  181 bits (458), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 197/405 (48%), Gaps = 55/405 (13%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVET- 168
           +CR      A   L  + E+ +K DV++Y T+I+ L + G +  A+++F EM  +G+++ 
Sbjct: 203 ICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSS 262

Query: 169 ----------------------------------NVVCYNILIDGFFKKGDYMRAKEIWE 194
                                             NV+ +N+L+D F K+G    A E+++
Sbjct: 263 VVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYK 322

Query: 195 RLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKA 254
            ++    + PN++TYN +++G C   R  E   M D M +N+   D  T+ S I G C  
Sbjct: 323 EMITR-GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMV 381

Query: 255 GNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-NVVSY 313
             V+   +V+R + + G+  +AVTY+ ++ GFC++GKIK   EL++ M   G L +V++Y
Sbjct: 382 KRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTY 441

Query: 314 NILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEE 373
            IL+ GL +NGK+++A+ I+E L++   +     +  +I G+CK                
Sbjct: 442 GILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKG--------------- 486

Query: 374 GGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTV 433
              G++ DA +L   +   G K N  T   +++G  +   L  A  L ++M   G +P  
Sbjct: 487 ---GKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPND 543

Query: 434 VSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGL 478
            +YNTLI    +      +   ++EM   G+  D  +  ++I+ L
Sbjct: 544 CTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 588



 Score =  114 bits (286), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 147/292 (50%), Gaps = 38/292 (13%)

Query: 109 ILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVING------LVKSGDLL---------- 152
           +  ++ + ++A      +  +G+ P++ +Y T+++G      L ++ ++L          
Sbjct: 307 VFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSP 366

Query: 153 -------------------GALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIW 193
                                + VF  + +RG+  N V Y+IL+ GF + G    A+E++
Sbjct: 367 DIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELF 426

Query: 194 ERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCK 253
           + +V    V P+V+TY ++++GLC  G+ ++ LE+++ ++K++ +     Y + I G+CK
Sbjct: 427 QEMV-SHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCK 485

Query: 254 AGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKG-CLNVVS 312
            G VE A  ++  +   G+  + +TY  MI G C+ G + E   L   M   G   N  +
Sbjct: 486 GGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCT 545

Query: 313 YNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKA 364
           YN LIR  L +G +  +  + E ++    +AD+++  ++I+ L  +G L+K+
Sbjct: 546 YNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLL-SGELDKS 596


>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
           OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
          Length = 666

 Score =  231 bits (590), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 151/554 (27%), Positives = 269/554 (48%), Gaps = 43/554 (7%)

Query: 79  VIQAYGKNSMPDKALDVFQRMNEI---------FGCEAGILCRKRQFEKAKRFLNSLWEK 129
           VI  + + + PD A+ ++++M EI         F       C   +   +      L + 
Sbjct: 112 VIGVFVRMNRPDVAISLYRKM-EIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKL 170

Query: 130 GLKPDVYSYGTVINGL----------------VKSGDLLGALAVFDEMFERGVETNVVCY 173
           G +PDV ++ T+++GL                V++G  L A+A+FD+M E G+   V+ +
Sbjct: 171 GFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG-FLEAVALFDQMVEIGLTPVVITF 229

Query: 174 NILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMK 233
           N LI+G   +G  + A  +  ++V +  ++ +VVTY  ++NG+CK G     L +  +M+
Sbjct: 230 NTLINGLCLEGRVLEAAALVNKMVGK-GLHIDVVTYGTIVNGMCKMGDTKSALNLLSKME 288

Query: 234 KNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIK 293
           +   + D   Y + I  LCK G+   A+ ++ EM+E GI  +  TYN MIDGFC  G+  
Sbjct: 289 ETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWS 348

Query: 294 ECFELW-EVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLI 352
           +   L  +++ R+   +V+++N LI   ++ GK+ EA  + + +  +    D+ T+  +I
Sbjct: 349 DAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMI 408

Query: 353 NGLCKNGYLNKAIQILNEVEEGG-------------EGRLADAASLVNRMDKHGCKLNAY 399
            G CK+   + A  + + +                   R+ +   L+  + + G   N  
Sbjct: 409 YGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTT 468

Query: 400 TCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEM 459
           T N+L++GF +   L  A  LF+EM   G  P  ++ N L+ G C+ E+  EA    + +
Sbjct: 469 TYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVI 528

Query: 460 LEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKV 519
                  D + Y+++I+G+C+  K+D A  L C     G  PDV  YN++I G C    +
Sbjct: 529 QMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAI 588

Query: 520 EDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNIT 579
            DA  L+  MK     P+  TYNTL+ G  K G+ DK++E+ + +       D  +  + 
Sbjct: 589 SDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKM- 647

Query: 580 LKGLCSCSRMSDAF 593
           +  L +  R+  +F
Sbjct: 648 VADLITDGRLDKSF 661



 Score =  197 bits (501), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 133/506 (26%), Positives = 242/506 (47%), Gaps = 44/506 (8%)

Query: 154 ALAVFDEMF-ERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYP-NVVTYNV 211
           A+  FD M   R   T V C N +I  F +      A  ++ +  ME    P N+ ++N+
Sbjct: 90  AIDFFDYMVRSRPFYTAVDC-NKVIGVFVRMNRPDVAISLYRK--MEIRRIPLNIYSFNI 146

Query: 212 MINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESG 271
           +I   C C +    L  + ++ K   + D  T+ + +HGLC    +  A  ++  MVE+G
Sbjct: 147 LIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG 206

Query: 272 IFVDAV----------------TYNAMIDGFCRAGKIKECFELWEVMGRKGC-LNVVSYN 314
            F++AV                T+N +I+G C  G++ E   L   M  KG  ++VV+Y 
Sbjct: 207 -FLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYG 265

Query: 315 ILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEG 374
            ++ G+ + G    A+++   + E +   D   +  +I+ LCK+G+ + A  + +E+ E 
Sbjct: 266 TIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEK 325

Query: 375 G-----------------EGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENA 417
           G                  GR +DA  L+  M +     +  T N+L++  ++  KL  A
Sbjct: 326 GIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEA 385

Query: 418 IFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLING 477
             L  EM  +   P  V+YN++I G CK  RF +A    K M +    PD++T++ +I+ 
Sbjct: 386 EKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDA----KHMFDLMASPDVVTFNTIIDV 441

Query: 478 LCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN 537
            C++K++D  ++L  +  ++G   + T YN LIHG C    +  A  L+  M      P+
Sbjct: 442 YCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPD 501

Query: 538 LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLN 597
            +T N L+ G  +    ++ALE++  I   ++  D ++YNI + G+C  S++ +A++   
Sbjct: 502 TITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFC 561

Query: 598 DALCRGILPTTITWHILVRAVMNNGA 623
                G+ P   T+++++       A
Sbjct: 562 SLPIHGVEPDVQTYNVMISGFCGKSA 587



 Score =  177 bits (448), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/459 (24%), Positives = 215/459 (46%), Gaps = 43/459 (9%)

Query: 180 FFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREK 239
           +FK  D   A + ++ +V     Y   V  N +I    +  R D  + ++ +M+      
Sbjct: 83  YFKSLD--DAIDFFDYMVRSRPFY-TAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPL 139

Query: 240 DSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELW 299
           + +++   I   C    +  +   + ++ + G   D VT+N ++ G C   +I E   L+
Sbjct: 140 NIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALF 199

Query: 300 EVMGRKGCLN----------------VVSYNILIRGLLENGKVDEAISIWELLREKNCNA 343
             M   G L                 V+++N LI GL   G+V EA ++   +  K  + 
Sbjct: 200 GYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHI 259

Query: 344 DSTTHGVLINGLCKNGYLNKAIQILNEVEEGG-EGRLADAASLVNRMDKHGCKLNAYTCN 402
           D  T+G ++NG+CK G    A+ +L+++EE   +  +   +++++R+ K G         
Sbjct: 260 DVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDG--------- 310

Query: 403 SLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEK 462
                        +A +LF EM  KG +P V +YN +I+G C   R+ +A   +++M+E+
Sbjct: 311 ----------HHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIER 360

Query: 463 GWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDA 522
              PD++T++ LI+   +  K+  A KLC + L +   PD   YN +I+G C   + +DA
Sbjct: 361 EINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDA 420

Query: 523 LQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKG 582
             ++  M      P++VT+NT++D   +    D+ +++   I    L  +  +YN  + G
Sbjct: 421 KHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHG 476

Query: 583 LCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNN 621
            C    ++ A +   + +  G+ P TIT +IL+     N
Sbjct: 477 FCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCEN 515


>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
           SV=1
          Length = 602

 Score =  231 bits (589), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 145/483 (30%), Positives = 237/483 (49%), Gaps = 24/483 (4%)

Query: 111 CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNV 170
           CR   + ++   L ++  KG  PDV     +I G     ++  A+ V  E+ E+  + +V
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVM-EILEKFGQPDV 158

Query: 171 VCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWD 230
             YN LI+GF K      A  + +R+       P+ VTYN+MI  LC  G+ D  L++ +
Sbjct: 159 FAYNALINGFCKMNRIDDATRVLDRM-RSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLN 217

Query: 231 RMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAG 290
           ++  +  +    TY   I      G V+ A ++  EM+  G+  D  TYN +I G C+ G
Sbjct: 218 QLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEG 277

Query: 291 KIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHG 349
            +   FE+   +  KGC  +V+SYNIL+R LL  GK +E   +   +  + C+ +  T+ 
Sbjct: 278 MVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYS 337

Query: 350 VLINGLCKNGYLNKAIQILNEVEEGG-----------------EGRLADAASLVNRMDKH 392
           +LI  LC++G + +A+ +L  ++E G                 EGRL  A   +  M   
Sbjct: 338 ILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISD 397

Query: 393 GCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEA 452
           GC  +    N+++    +  K + A+ +F ++   GCSP   SYNT+ + L        A
Sbjct: 398 GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRA 457

Query: 453 YSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHG 512
              + EM+  G  PD ITY+ +I+ LC+   +D A +L        F P V  YNI++ G
Sbjct: 458 LHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLG 517

Query: 513 LCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD 572
            C A ++EDA+ +  +M    C PN  TY  L++G+   G   +A+E+ N +    +R D
Sbjct: 518 FCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDL----VRID 573

Query: 573 IIS 575
            IS
Sbjct: 574 AIS 576



 Score =  204 bits (520), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 119/435 (27%), Positives = 211/435 (48%), Gaps = 21/435 (4%)

Query: 182 KKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDS 241
           + G+Y+ +  + E +V +    P+V+    +I G        + + + + ++K   + D 
Sbjct: 101 RSGNYIESLHLLETMVRK-GYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDV 158

Query: 242 FTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEV 301
           F Y + I+G CK   ++ A RV   M       D VTYN MI   C  GK+    ++   
Sbjct: 159 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQ 218

Query: 302 MGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGY 360
           +    C   V++Y ILI   +  G VDEA+ + + +  +    D  T+  +I G+CK G 
Sbjct: 219 LLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGM 278

Query: 361 LNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFL 420
           +++A +                  +V  ++  GC+ +  + N L+   +   K E    L
Sbjct: 279 VDRAFE------------------MVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKL 320

Query: 421 FKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQ 480
             +M  + C P VV+Y+ LI  LC+  +  EA + +K M EKG  PD  +Y  LI   C+
Sbjct: 321 MTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCR 380

Query: 481 SKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVT 540
             ++D+A++     +  G  PD+  YN ++  LC  GK + AL+++  + +  C PN  +
Sbjct: 381 EGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSS 440

Query: 541 YNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDAL 600
           YNT+   L+ +GD  +AL +   ++   + PD I+YN  +  LC    + +AFE L D  
Sbjct: 441 YNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMR 500

Query: 601 CRGILPTTITWHILV 615
                P+ +T++I++
Sbjct: 501 SCEFHPSVVTYNIVL 515



 Score =  199 bits (505), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 125/453 (27%), Positives = 226/453 (49%), Gaps = 28/453 (6%)

Query: 109 ILCRK--------RQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDE 160
           ILC K        R   KA R +  + EK  +PDV++Y  +ING  K   +  A  V D 
Sbjct: 125 ILCTKLIKGFFTLRNIPKAVRVM-EILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDR 183

Query: 161 MFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCG 220
           M  +    + V YNI+I     +G    A ++  +L+ + +  P V+TY ++I      G
Sbjct: 184 MRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSD-NCQPTVITYTILIEATMLEG 242

Query: 221 RFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYN 280
             DE L++ D M     + D FTY + I G+CK G V+ A  + R +   G   D ++YN
Sbjct: 243 GVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYN 302

Query: 281 AMIDGFCRAGKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREK 339
            ++      GK +E  +L   M  + C  NVV+Y+ILI  L  +GK++EA+++ +L++EK
Sbjct: 303 ILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEK 362

Query: 340 NCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG-----------------EGRLADA 382
               D+ ++  LI   C+ G L+ AI+ L  +   G                  G+   A
Sbjct: 363 GLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQA 422

Query: 383 ASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLING 442
             +  ++ + GC  N+ + N++ +    +     A+ +  EM   G  P  ++YN++I+ 
Sbjct: 423 LEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISC 482

Query: 443 LCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPD 502
           LC+     EA+  + +M    + P ++TY++++ G C++ +I+ A+ +    +  G  P+
Sbjct: 483 LCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPN 542

Query: 503 VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCV 535
            T Y +LI G+  AG   +A++L +++ + + +
Sbjct: 543 ETTYTVLIEGIGFAGYRAEAMELANDLVRIDAI 575



 Score =  193 bits (491), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 194/391 (49%), Gaps = 17/391 (4%)

Query: 249 HGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL 308
           H  C++GN   +  +   MV  G   D +    +I GF     I +   + E++ + G  
Sbjct: 97  HRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQP 156

Query: 309 NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQIL 368
           +V +YN LI G  +  ++D+A  + + +R K+ + D+ T+ ++I  LC  G L+ A+++L
Sbjct: 157 DVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVL 216

Query: 369 NEVEEGG-----------------EGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQA 411
           N++                     EG + +A  L++ M   G K + +T N+++ G  + 
Sbjct: 217 NQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKE 276

Query: 412 SKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITY 471
             ++ A  + + +  KGC P V+SYN L+  L    ++ E    + +M  +   P+++TY
Sbjct: 277 GMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTY 336

Query: 472 SLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKK 531
           S+LI  LC+  KI+ A+ L     +KG TPD   Y+ LI   C  G+++ A++    M  
Sbjct: 337 SILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMIS 396

Query: 532 RNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSD 591
             C+P++V YNT++  L K G  D+ALEI+  + E    P+  SYN     L S      
Sbjct: 397 DGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIR 456

Query: 592 AFEFLNDALCRGILPTTITWHILVRAVMNNG 622
           A   + + +  GI P  IT++ ++  +   G
Sbjct: 457 ALHMILEMMSNGIDPDEITYNSMISCLCREG 487



 Score =  191 bits (484), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/480 (26%), Positives = 236/480 (49%), Gaps = 42/480 (8%)

Query: 22  LALFDSATREPGYAHSPHLFHHILRRLIDPKLVV------------HVSRILELIEIQKC 69
           L +F  + R   Y  S HL   ++R+  +P +++            ++ + + ++EI + 
Sbjct: 93  LKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEK 152

Query: 70  YCPEDVAL--SVIQAYGKNSMPDKALDVFQRMNE--------IFGCEAGILCRKRQFEKA 119
           +   DV    ++I  + K +  D A  V  RM           +    G LC + + + A
Sbjct: 153 FGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLA 212

Query: 120 KRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDG 179
            + LN L     +P V +Y  +I   +  G +  AL + DEM  RG++ ++  YN +I G
Sbjct: 213 LKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRG 272

Query: 180 FFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREK 239
             K+G   RA E+   L ++    P+V++YN+++  L   G+++E  ++  +M   + + 
Sbjct: 273 MCKEGMVDRAFEMVRNLELK-GCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDP 331

Query: 240 DSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELW 299
           +  TY   I  LC+ G +E A  + + M E G+  DA +Y+ +I  FCR G++    E  
Sbjct: 332 NVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFL 391

Query: 300 EVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKN 358
           E M   GCL ++V+YN ++  L +NGK D+A+ I+  L E  C+ +S+++  + + L  +
Sbjct: 392 ETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSS 451

Query: 359 GYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAI 418
           G   +A+ ++ E                  M  +G   +  T NS+++   +   ++ A 
Sbjct: 452 GDKIRALHMILE------------------MMSNGIDPDEITYNSMISCLCREGMVDEAF 493

Query: 419 FLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGL 478
            L  +M      P+VV+YN ++ G CK  R  +A + ++ M+  G +P+  TY++LI G+
Sbjct: 494 ELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGI 553



 Score =  105 bits (262), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 100/209 (47%), Gaps = 1/209 (0%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
            CR+ + + A  FL ++   G  PD+ +Y TV+  L K+G    AL +F ++ E G   N
Sbjct: 378 FCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPN 437

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
              YN +    +  GD +RA  +   + M   + P+ +TYN MI+ LC+ G  DE  E+ 
Sbjct: 438 SSSYNTMFSALWSSGDKIRALHMILEM-MSNGIDPDEITYNSMISCLCREGMVDEAFELL 496

Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
             M+  E      TY   + G CKA  +E A  V   MV +G   +  TY  +I+G   A
Sbjct: 497 VDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFA 556

Query: 290 GKIKECFELWEVMGRKGCLNVVSYNILIR 318
           G   E  EL   + R   ++  S+  L R
Sbjct: 557 GYRAEAMELANDLVRIDAISEYSFKRLHR 585


>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
           mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
           SV=1
          Length = 590

 Score =  230 bits (587), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 139/453 (30%), Positives = 226/453 (49%), Gaps = 21/453 (4%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
            CR+ Q   A   L  + + G  P + +  +++NG      +  A+A+ D+M E G + +
Sbjct: 120 FCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPD 179

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
            V +  L+ G F+      A  + ER+V++    P++VTY  +INGLCK G  D  L + 
Sbjct: 180 TVTFTTLVHGLFQHNKASEAVALVERMVVK-GCQPDLVTYGAVINGLCKRGEPDLALNLL 238

Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
           ++M+K + E D   Y + I GLCK  +++ A  ++ +M   GI  D  TYN +I   C  
Sbjct: 239 NKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNY 298

Query: 290 GKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIW-ELLREKNCNADSTT 347
           G+  +   L   M  K    ++V +N LI   ++ GK+ EA  ++ E+++ K+C  D   
Sbjct: 299 GRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVA 358

Query: 348 HGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNG 407
           +  LI G CK             VEEG E        +   M + G   N  T  +L++G
Sbjct: 359 YNTLIKGFCK----------YKRVEEGME--------VFREMSQRGLVGNTVTYTTLIHG 400

Query: 408 FIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPD 467
           F QA   +NA  +FK+M   G  P +++YN L++GLC       A    + M ++  K D
Sbjct: 401 FFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLD 460

Query: 468 MITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYS 527
           ++TY+ +I  LC++ K++    L C    KG  P+V  Y  ++ G C  G  E+A  L+ 
Sbjct: 461 IVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFV 520

Query: 528 NMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEI 560
            MK+   +PN  TYNTL+    + GD   + E+
Sbjct: 521 EMKEDGPLPNSGTYNTLIRARLRDGDEAASAEL 553



 Score =  229 bits (584), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 141/493 (28%), Positives = 250/493 (50%), Gaps = 23/493 (4%)

Query: 133 PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEI 192
           P +  +  +++ + K       +++ ++M   G+  N+  Y+I I+ F ++     A  I
Sbjct: 73  PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAI 132

Query: 193 WERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLC 252
             ++ M+    P++VT N ++NG C   R  E + + D+M +   + D+ T+ + +HGL 
Sbjct: 133 LGKM-MKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLF 191

Query: 253 KAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL--NV 310
           +      A  +   MV  G   D VTY A+I+G C+ G+      L   M  KG +  +V
Sbjct: 192 QHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKM-EKGKIEADV 250

Query: 311 VSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNE 370
           V YN +I GL +   +D+A  ++  +  K    D  T+  LI+ LC              
Sbjct: 251 VIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCN------------- 297

Query: 371 VEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSR-KGC 429
                 GR +DA+ L++ M +     +    N+L++ F++  KL  A  L+ EM + K C
Sbjct: 298 -----YGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHC 352

Query: 430 SPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALK 489
            P VV+YNTLI G CK +R  E     +EM ++G   + +TY+ LI+G  Q++  D A  
Sbjct: 353 FPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 412

Query: 490 LCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLF 549
           +  Q +  G  PD+  YNIL+ GLC+ G VE AL ++  M+KR+   ++VTY T+++ L 
Sbjct: 413 VFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALC 472

Query: 550 KTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTI 609
           K G  +   +++  +  + ++P++++Y   + G C      +A     +    G LP + 
Sbjct: 473 KAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSG 532

Query: 610 TWHILVRAVMNNG 622
           T++ L+RA + +G
Sbjct: 533 TYNTLIRARLRDG 545



 Score =  210 bits (535), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 133/456 (29%), Positives = 229/456 (50%), Gaps = 23/456 (5%)

Query: 130 GLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA 189
           G+  ++Y+Y   IN   +   L  ALA+  +M + G   ++V  N L++GF        A
Sbjct: 105 GISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEA 164

Query: 190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIH 249
             + +++V E    P+ VT+  +++GL +  +  E + + +RM     + D  TY + I+
Sbjct: 165 VALVDQMV-EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVIN 223

Query: 250 GLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-L 308
           GLCK G  + A  +  +M +  I  D V YN +IDG C+   + + F+L+  M  KG   
Sbjct: 224 GLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKP 283

Query: 309 NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQIL 368
           +V +YN LI  L   G+  +A  +   + EKN N D      LI+   K           
Sbjct: 284 DVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVK----------- 332

Query: 369 NEVEEGGEGRLADAASLVNRM--DKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSR 426
                  EG+L +A  L + M   KH C  +    N+L+ GF +  ++E  + +F+EMS+
Sbjct: 333 -------EGKLVEAEKLYDEMVKSKH-CFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQ 384

Query: 427 KGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDM 486
           +G     V+Y TLI+G  +      A    K+M+  G  PD++TY++L++GLC +  ++ 
Sbjct: 385 RGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVET 444

Query: 487 ALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMD 546
           AL +     ++    D+  Y  +I  LC AGKVED   L+ ++  +   PN+VTY T+M 
Sbjct: 445 ALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMS 504

Query: 547 GLFKTGDCDKALEIWNHILEERLRPDIISYNITLKG 582
           G  + G  ++A  ++  + E+   P+  +YN  ++ 
Sbjct: 505 GFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRA 540



 Score =  175 bits (443), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 193/384 (50%), Gaps = 12/384 (3%)

Query: 2   VISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRIL 61
           +++   LLN          A+AL D    E GY      F  ++  L           ++
Sbjct: 145 IVTLNSLLNGFCHGNRISEAVALVDQMV-EMGYQPDTVTFTTLVHGLFQHNKASEAVALV 203

Query: 62  ELIEIQKCYCPEDVAL-SVIQAYGKNSMPDKALDVFQRMNE--------IFGCEAGILCR 112
           E + ++ C  P+ V   +VI    K   PD AL++  +M +        I+      LC+
Sbjct: 204 ERMVVKGCQ-PDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCK 262

Query: 113 KRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVC 172
            +  + A    N +  KG+KPDV++Y  +I+ L   G    A  +  +M E+ +  ++V 
Sbjct: 263 YKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVF 322

Query: 173 YNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRM 232
           +N LID F K+G  + A+++++ +V     +P+VV YN +I G CK  R +E +E++  M
Sbjct: 323 FNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREM 382

Query: 233 KKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKI 292
            +     ++ TY + IHG  +A + + A+ V+++MV  G+  D +TYN ++DG C  G +
Sbjct: 383 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNV 442

Query: 293 KECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVL 351
           +    ++E M ++   L++V+Y  +I  L + GKV++   ++  L  K    +  T+  +
Sbjct: 443 ETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTM 502

Query: 352 INGLCKNGYLNKAIQILNEVEEGG 375
           ++G C+ G   +A  +  E++E G
Sbjct: 503 MSGFCRKGLKEEADALFVEMKEDG 526



 Score =  140 bits (354), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 127/245 (51%)

Query: 378 RLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYN 437
           +L DA  L   M K     +    + L++   + +K +  I L ++M   G S  + +Y+
Sbjct: 55  KLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 114

Query: 438 TLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQK 497
             IN  C+  +   A + + +M++ G+ P ++T + L+NG C   +I  A+ L  Q ++ 
Sbjct: 115 IFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 174

Query: 498 GFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKA 557
           G+ PD   +  L+HGL    K  +A+ L   M  + C P+LVTY  +++GL K G+ D A
Sbjct: 175 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 234

Query: 558 LEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRA 617
           L + N + + ++  D++ YN  + GLC    M DAF+  N    +GI P   T++ L+  
Sbjct: 235 LNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISC 294

Query: 618 VMNNG 622
           + N G
Sbjct: 295 LCNYG 299



 Score = 53.1 bits (126), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 65/146 (44%)

Query: 480 QSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLV 539
           Q  K+D A+ L    ++    P +  ++ L+  +    K +  + L   M+      NL 
Sbjct: 52  QDLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLY 111

Query: 540 TYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDA 599
           TY+  ++   +      AL I   +++    P I++ N  L G C  +R+S+A   ++  
Sbjct: 112 TYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQM 171

Query: 600 LCRGILPTTITWHILVRAVMNNGAST 625
           +  G  P T+T+  LV  +  +  ++
Sbjct: 172 VEMGYQPDTVTFTTLVHGLFQHNKAS 197


>sp|Q9LN69|PPR50_ARATH Putative pentatricopeptide repeat-containing protein At1g19290
           OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2
          Length = 904

 Score =  230 bits (587), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 172/622 (27%), Positives = 290/622 (46%), Gaps = 96/622 (15%)

Query: 96  FQRMNEIFGCEAGI--LCRKRQFEKAKRFLNSLWEK-GLKPDVYSYGTVINGLVKSGDLL 152
           F+   ++F C   +   CR    +KA  F        GL+ +V +Y ++ING    GD+ 
Sbjct: 219 FEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVE 278

Query: 153 GALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVM 212
           G   V   M ERGV  NVV Y  LI G+ KKG    A+ ++E L+ E  +  +   Y V+
Sbjct: 279 GMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFE-LLKEKKLVADQHMYGVL 337

Query: 213 INGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGI 272
           ++G C+ G+  + + + D M +     ++    S I+G CK+G +  AE+++  M +  +
Sbjct: 338 MDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSL 397

Query: 273 FVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAIS 331
             D  TYN ++DG+CRAG + E  +L + M +K  +  V++YNIL++G    G   + +S
Sbjct: 398 KPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLS 457

Query: 332 IWELLREKNCNAD-----------------------------------STTHGVLINGLC 356
           +W+++ ++  NAD                                   + T  V+I+GLC
Sbjct: 458 LWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLC 517

Query: 357 KNGYLNKAIQILNEV---------------EEG--GEGRLADAASLVNRMDKHGCKLNAY 399
           K   +N+A +IL+ V                 G    G L +A ++   M++ G      
Sbjct: 518 KMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERKGIFPTIE 577

Query: 400 TCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEM 459
             N+L++G  +   L     L  E+  +G +PTV +Y  LI G C +    +AY+   EM
Sbjct: 578 MYNTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMIDKAYATCFEM 637

Query: 460 LEKGWKPDMITYSLLINGLCQSKKIDMALKLCC----------------QFLQKGFT--- 500
           +EKG   ++   S + N L +  KID A  L                  +FL+   T   
Sbjct: 638 IEKGITLNVNICSKIANSLFRLDKIDEACLLLQKIVDFDLLLPGYQSLKEFLEASATTCL 697

Query: 501 -------------------PDVTMYNILIHGLCSAGKVEDALQLYSNMKKRN-CVPNLVT 540
                              P+  +YN+ I GLC AGK+EDA +L+S++   +  +P+  T
Sbjct: 698 KTQKIAESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDEYT 757

Query: 541 YNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDAL 600
           Y  L+ G    GD +KA  + + +  + + P+I++YN  +KGLC    +  A   L+   
Sbjct: 758 YTILIHGCAIAGDINKAFTLRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLP 817

Query: 601 CRGILPTTITWHILVRAVMNNG 622
            +GI P  IT++ L+  ++ +G
Sbjct: 818 QKGITPNAITYNTLIDGLVKSG 839



 Score =  202 bits (515), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 145/557 (26%), Positives = 249/557 (44%), Gaps = 66/557 (11%)

Query: 78  SVIQAYGKNSMPDKALDVFQRMNE--------IFGCEAGILCRKRQFEKAKRFLNSLWEK 129
           S+I+ Y K  + ++A  VF+ + E        ++G      CR  Q   A R  +++ E 
Sbjct: 301 SLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEI 360

Query: 130 GLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA 189
           G++ +     ++ING  KSG L+ A  +F  M +  ++ +   YN L+DG+ + G    A
Sbjct: 361 GVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEA 420

Query: 190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIH 249
            ++ +++  +  V P V+TYN+++ G  + G F + L +W  M K     D  +  + + 
Sbjct: 421 LKLCDQMC-QKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLE 479

Query: 250 GLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLN 309
            L K G+   A +++  ++  G+  D +T N MI G C+  K+ E  E+ + +    C  
Sbjct: 480 ALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKP 539

Query: 310 VV-SYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQIL 368
            V +Y  L  G  + G + EA ++ E +  K        +  LI+G  K  +LNK   ++
Sbjct: 540 AVQTYQALSHGYYKVGNLKEAFAVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVADLV 599

Query: 369 NEVEEGGE-----------------GRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQA 411
            E+   G                  G +  A +    M + G  LN   C+ + N   + 
Sbjct: 600 IELRARGLTPTVATYGALITGWCNIGMIDKAYATCFEMIEKGITLNVNICSKIANSLFRL 659

Query: 412 SKLENAIFL-------------------FKEMSRKGC-------------------SPTV 433
            K++ A  L                   F E S   C                    P  
Sbjct: 660 DKIDEACLLLQKIVDFDLLLPGYQSLKEFLEASATTCLKTQKIAESVENSTPKKLLVPNN 719

Query: 434 VSYNTLINGLCKVERFGEAYSFVKEMLEKG-WKPDMITYSLLINGLCQSKKIDMALKLCC 492
           + YN  I GLCK  +  +A     ++L    + PD  TY++LI+G   +  I+ A  L  
Sbjct: 720 IVYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDEYTYTILIHGCAIAGDINKAFTLRD 779

Query: 493 QFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTG 552
           +   KG  P++  YN LI GLC  G V+ A +L   + ++   PN +TYNTL+DGL K+G
Sbjct: 780 EMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGLVKSG 839

Query: 553 DCDKALEIWNHILEERL 569
           +  +A+ +   ++E+ L
Sbjct: 840 NVAEAMRLKEKMIEKGL 856



 Score =  197 bits (501), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 214/417 (51%), Gaps = 19/417 (4%)

Query: 225 CLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVES-GIFVDAVTYNAMI 283
            L ++D+M   E   D FT    ++  C++GNV+ A    +E   S G+ ++ VTYN++I
Sbjct: 209 ALHVYDQMISFEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLI 268

Query: 284 DGFCRAGKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCN 342
           +G+   G ++    +  +M  +G   NVV+Y  LI+G  + G ++EA  ++ELL+EK   
Sbjct: 269 NGYAMIGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLV 328

Query: 343 ADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG-----------------EGRLADAASL 385
           AD   +GVL++G C+ G +  A+++ + + E G                  G+L +A  +
Sbjct: 329 ADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQI 388

Query: 386 VNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCK 445
            +RM+    K + +T N+L++G+ +A  ++ A+ L  +M +K   PTV++YN L+ G  +
Sbjct: 389 FSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSR 448

Query: 446 VERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTM 505
           +  F +  S  K ML++G   D I+ S L+  L +    + A+KL    L +G   D   
Sbjct: 449 IGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTIT 508

Query: 506 YNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHIL 565
            N++I GLC   KV +A ++  N+    C P + TY  L  G +K G+  +A  +  ++ 
Sbjct: 509 LNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYME 568

Query: 566 EERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
            + + P I  YN  + G      ++   + + +   RG+ PT  T+  L+    N G
Sbjct: 569 RKGIFPTIEMYNTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALITGWCNIG 625



 Score =  170 bits (430), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 202/430 (46%), Gaps = 29/430 (6%)

Query: 192 IWERLVM---ETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFI 248
           +W  LV    E S  P V  +++++    + G     L ++D M    R     +  S +
Sbjct: 140 VWGELVRVFKEFSFSPTV--FDMILKVYAEKGLVKNALHVFDNMGNYGRIPSLLSCNSLL 197

Query: 249 HGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECF----ELWEVMGR 304
             L + G    A  VY +M+   +  D  T + +++ +CR+G + +      E    +G 
Sbjct: 198 SNLVRKGENFVALHVYDQMISFEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGL 257

Query: 305 KGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKA 364
           +  LNVV+YN LI G    G V+    +  L+ E+  + +  T+  LI G CK G + +A
Sbjct: 258 E--LNVVTYNSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEA 315

Query: 365 IQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEM 424
             +   ++E           LV     +G          LM+G+ +  ++ +A+ +   M
Sbjct: 316 EHVFELLKE---------KKLVADQHMYGV---------LMDGYCRTGQIRDAVRVHDNM 357

Query: 425 SRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKI 484
              G        N+LING CK  +  EA      M +   KPD  TY+ L++G C++  +
Sbjct: 358 IEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYV 417

Query: 485 DMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTL 544
           D ALKLC Q  QK   P V  YNIL+ G    G   D L L+  M KR    + ++ +TL
Sbjct: 418 DEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTL 477

Query: 545 MDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGI 604
           ++ LFK GD ++A+++W ++L   L  D I+ N+ + GLC   ++++A E L++      
Sbjct: 478 LEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRC 537

Query: 605 LPTTITWHIL 614
            P   T+  L
Sbjct: 538 KPAVQTYQAL 547



 Score =  147 bits (370), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/418 (26%), Positives = 203/418 (48%), Gaps = 35/418 (8%)

Query: 223 DECLEMWDRMKKNEREKDSF-TYCSFIHGLCKAGNVEGAERVYREMV---ESGIFV---- 274
           + CLE+++   K ++ +  +  YC  +H L +A N +  +    E+V    SG  V    
Sbjct: 85  EACLEIFNLASKQQKFRPDYKAYCKMVHILSRARNYQQTKSYLCELVALNHSGFVVWGEL 144

Query: 275 ---------DAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIRGLLENG 324
                        ++ ++  +   G +K    +++ MG  G + +++S N L+  L+  G
Sbjct: 145 VRVFKEFSFSPTVFDMILKVYAEKGLVKNALHVFDNMGNYGRIPSLLSCNSLLSNLVRKG 204

Query: 325 KVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAAS 384
           +   A+ +++ +     + D  T  +++N  C++G ++KA+    E E          +S
Sbjct: 205 ENFVALHVYDQMISFEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETE----------SS 254

Query: 385 LVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLC 444
           L       G +LN  T NSL+NG+     +E    + + MS +G S  VV+Y +LI G C
Sbjct: 255 L-------GLELNVVTYNSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYC 307

Query: 445 KVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVT 504
           K     EA    + + EK    D   Y +L++G C++ +I  A+++    ++ G   + T
Sbjct: 308 KKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTT 367

Query: 505 MYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHI 564
           + N LI+G C +G++ +A Q++S M   +  P+  TYNTL+DG  + G  D+AL++ + +
Sbjct: 368 ICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQM 427

Query: 565 LEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
            ++ + P +++YNI LKG        D        L RG+    I+   L+ A+   G
Sbjct: 428 CQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLG 485



 Score =  112 bits (281), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 127/275 (46%), Gaps = 39/275 (14%)

Query: 114 RQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNV--- 170
           R   K    +  L  +GL P V +YG +I G    G +  A A   EM E+G+  NV   
Sbjct: 590 RHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMIDKAYATCFEMIEKGITLNVNIC 649

Query: 171 -----------------------VCYNILIDGFFKKGDYMRA--------KEIWERLVME 199
                                  V +++L+ G+    +++ A        ++I E +   
Sbjct: 650 SKIANSLFRLDKIDEACLLLQKIVDFDLLLPGYQSLKEFLEASATTCLKTQKIAESVENS 709

Query: 200 TS---VYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNER-EKDSFTYCSFIHGLCKAG 255
           T    + PN + YNV I GLCK G+ ++  +++  +  ++R   D +TY   IHG   AG
Sbjct: 710 TPKKLLVPNNIVYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDEYTYTILIHGCAIAG 769

Query: 256 NVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-NVVSYN 314
           ++  A  +  EM   GI  + VTYNA+I G C+ G +     L   + +KG   N ++YN
Sbjct: 770 DINKAFTLRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYN 829

Query: 315 ILIRGLLENGKVDEAISIWELLREKNCNADSTTHG 349
            LI GL+++G V EA+ + E + EK     S   G
Sbjct: 830 TLIDGLVKSGNVAEAMRLKEKMIEKGLVRGSDKQG 864



 Score = 91.3 bits (225), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 9/159 (5%)

Query: 169 NVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEM 228
           N + YN+ I G  K G    A++++  L+      P+  TY ++I+G    G  ++   +
Sbjct: 718 NNIVYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDEYTYTILIHGCAIAGDINKAFTL 777

Query: 229 WDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR 288
            D M       +  TY + I GLCK GNV+ A+R+  ++ + GI  +A+TYN +IDG  +
Sbjct: 778 RDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGLVK 837

Query: 289 AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVD 327
           +G + E   L E M  KG         L+RG  + G VD
Sbjct: 838 SGNVAEAMRLKEKMIEKG---------LVRGSDKQGDVD 867


>sp|P0C7Q9|PPR56_ARATH Pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2
           SV=1
          Length = 718

 Score =  230 bits (586), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 154/527 (29%), Positives = 253/527 (48%), Gaps = 25/527 (4%)

Query: 119 AKRFLNS---LWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNI 175
           A++FL S   +  KG  P V +   V+  L  S  +  A AV++ M E G+   V+ +N 
Sbjct: 184 AEKFLLSFEKMIRKGFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPTVITFNT 243

Query: 176 LIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKN 235
           ++D  FK GD  R  +IW  +      +  V TYN++ING  K G+ +E       M+++
Sbjct: 244 MLDSCFKAGDLERVDKIWLEMKRRNIEFSEV-TYNILINGFSKNGKMEEARRFHGDMRRS 302

Query: 236 EREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKEC 295
                 +++   I G CK G  + A  V  EM+ +GI+    TYN  I   C  G+I + 
Sbjct: 303 GFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDA 362

Query: 296 FELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGL 355
            EL   M      +VVSYN L+ G ++ GK  EA  +++ LR  + +    T+  LI+GL
Sbjct: 363 RELLSSMA---APDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGL 419

Query: 356 CKNGYLNKAIQILNEVEEG-----------------GEGRLADAASLVNRMDKHGCKLNA 398
           C++G L  A ++  E+                      G L+ A  + + M + G K + 
Sbjct: 420 CESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDG 479

Query: 399 YTCNSLMNGFIQASKLENAIFLFKEM-SRKGCSPTVVSYNTLINGLCKVERFGEAYSFVK 457
           Y   +   G ++    + A  L +EM +    +P +  YN  I+GLCKV    +A  F +
Sbjct: 480 YAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQR 539

Query: 458 EMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAG 517
           ++   G  PD +TY+ +I G  ++ +  MA  L  + L+K   P V  Y +LI+G   AG
Sbjct: 540 KIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAG 599

Query: 518 KVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYN 577
           ++E A Q  + MKKR   PN++T+N L+ G+ K G+ D+A      + EE + P+  SY 
Sbjct: 600 RLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYT 659

Query: 578 ITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNGAS 624
           + +   C   +  +  +   + L + I P   T   L + +  +  S
Sbjct: 660 MLISKNCDFEKWEEVVKLYKEMLDKEIEPDGYTHRALFKHLEKDHES 706



 Score =  206 bits (524), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 129/438 (29%), Positives = 218/438 (49%), Gaps = 25/438 (5%)

Query: 115 QFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYN 174
           + E+A+RF   +   G     YS+  +I G  K G    A  V DEM   G+      YN
Sbjct: 288 KMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYN 347

Query: 175 ILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKK 234
           I I      G    A+E+     + +   P+VV+YN +++G  K G+F E   ++D ++ 
Sbjct: 348 IYICALCDFGRIDDAREL-----LSSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRA 402

Query: 235 NEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKE 294
            +      TY + I GLC++GN+EGA+R+  EM    IF D +TY  ++ GF + G +  
Sbjct: 403 GDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSM 462

Query: 295 CFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNA-DSTTHGVLI 352
             E+++ M RKG   +  +Y     G L  G  D+A  + E +   + +A D T + V I
Sbjct: 463 ATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRI 522

Query: 353 NGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQAS 412
           +GLCK G L KAI+   ++                   + G   +  T  +++ G+++  
Sbjct: 523 DGLCKVGNLVKAIEFQRKIF------------------RVGLVPDHVTYTTVIRGYLENG 564

Query: 413 KLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYS 472
           + + A  L+ EM RK   P+V++Y  LI G  K  R  +A+ +  EM ++G +P+++T++
Sbjct: 565 QFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHN 624

Query: 473 LLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKR 532
            L+ G+C++  ID A +  C+  ++G  P+   Y +LI   C   K E+ ++LY  M  +
Sbjct: 625 ALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKLYKEMLDK 684

Query: 533 NCVPNLVTYNTLMDGLFK 550
              P+  T+  L   L K
Sbjct: 685 EIEPDGYTHRALFKHLEK 702



 Score =  200 bits (508), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 151/532 (28%), Positives = 257/532 (48%), Gaps = 40/532 (7%)

Query: 83  YGKNSMPDKALDVFQRM------NEIFGCEA--GILCRKRQFEKAKRFLNSLWEKGLKPD 134
           Y K SM +K L  F++M        +  C     +L   R   KA     ++ E G+ P 
Sbjct: 178 YTKKSMAEKFLLSFEKMIRKGFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPT 237

Query: 135 VYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWE 194
           V ++ T+++   K+GDL     ++ EM  R +E + V YNILI+GF K G    A+    
Sbjct: 238 VITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHG 297

Query: 195 RLVMET-SVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCK 253
            +     +V P   ++N +I G CK G FD+   + D M        + TY  +I  LC 
Sbjct: 298 DMRRSGFAVTP--YSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCD 355

Query: 254 AGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLN--VV 311
            G ++ A    RE++ S    D V+YN ++ G+ + GK  E   L++ + R G ++  +V
Sbjct: 356 FGRIDDA----RELLSSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDL-RAGDIHPSIV 410

Query: 312 SYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEV 371
           +YN LI GL E+G ++ A  + E +  +    D  T+  L+ G  KNG L+ A ++ +E+
Sbjct: 411 TYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEM 470

Query: 372 ------EEG--------GEGRLAD---AASLVNRM---DKHGCKLNAYTCNSLMNGFIQA 411
                  +G        GE RL D   A  L   M   D H   L  Y  N  ++G  + 
Sbjct: 471 LRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIY--NVRIDGLCKV 528

Query: 412 SKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITY 471
             L  AI   +++ R G  P  V+Y T+I G  +  +F  A +   EML K   P +ITY
Sbjct: 529 GNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITY 588

Query: 472 SLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKK 531
            +LI G  ++ +++ A +   +  ++G  P+V  +N L++G+C AG +++A +    M++
Sbjct: 589 FVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEE 648

Query: 532 RNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGL 583
               PN  +Y  L+         ++ ++++  +L++ + PD  ++    K L
Sbjct: 649 EGIPPNKYSYTMLISKNCDFEKWEEVVKLYKEMLDKEIEPDGYTHRALFKHL 700


>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
           SV=1
          Length = 741

 Score =  229 bits (585), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 147/505 (29%), Positives = 244/505 (48%), Gaps = 23/505 (4%)

Query: 118 KAKRFLNSLWEKGLKPDVYSYGTVINGLVKS-GDLLGALAVFDEMFERGVETNVVCYNIL 176
           +A+R    +   GL   V S    +  L K       A+ VF E  E GV  NV  YNI+
Sbjct: 193 EARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIV 252

Query: 177 IDGFFKKGDYMRAKEIWERLVMETSVY-PNVVTYNVMINGLCKCGRFDECLEMWDRMKKN 235
           I    + G    A  +   L+ME   Y P+V++Y+ ++NG C+ G  D+  ++ + MK+ 
Sbjct: 253 IHFVCQLGRIKEAHHLL--LLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRK 310

Query: 236 EREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKEC 295
             + +S+ Y S I  LC+   +  AE  + EM+  GI  D V Y  +IDGFC+ G I+  
Sbjct: 311 GLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAA 370

Query: 296 FEL-WEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLING 354
            +  +E+  R    +V++Y  +I G  + G + EA  ++  +  K    DS T   LING
Sbjct: 371 SKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELING 430

Query: 355 LCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKL 414
            CK G++                   DA  + N M + GC  N  T  +L++G  +   L
Sbjct: 431 YCKAGHMK------------------DAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDL 472

Query: 415 ENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLL 474
           ++A  L  EM + G  P + +YN+++NGLCK     EA   V E    G   D +TY+ L
Sbjct: 473 DSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTL 532

Query: 475 INGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNC 534
           ++  C+S ++D A ++  + L KG  P +  +N+L++G C  G +ED  +L + M  +  
Sbjct: 533 MDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGI 592

Query: 535 VPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFE 594
            PN  T+N+L+       +   A  I+  +    + PD  +Y   +KG C    M +A+ 
Sbjct: 593 APNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWF 652

Query: 595 FLNDALCRGILPTTITWHILVRAVM 619
              +   +G   +  T+ +L++  +
Sbjct: 653 LFQEMKGKGFSVSVSTYSVLIKGFL 677



 Score =  228 bits (581), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 140/466 (30%), Positives = 234/466 (50%), Gaps = 25/466 (5%)

Query: 111 CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNV 170
           CR  + +K  + +  +  KGLKP+ Y YG++I  L +   L  A   F EM  +G+  + 
Sbjct: 292 CRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDT 351

Query: 171 VCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWD 230
           V Y  LIDGF K+GD +RA   +   +    + P+V+TY  +I+G C+ G   E  +++ 
Sbjct: 352 VVYTTLIDGFCKRGD-IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFH 410

Query: 231 RMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAG 290
            M     E DS T+   I+G CKAG+++ A RV+  M+++G   + VTY  +IDG C+ G
Sbjct: 411 EMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEG 470

Query: 291 KIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHG 349
            +    EL   M + G   N+ +YN ++ GL ++G ++EA+ +         NAD+ T+ 
Sbjct: 471 DLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYT 530

Query: 350 VLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFI 409
            L++  CK+G ++KA +IL E                  M   G +    T N LMNGF 
Sbjct: 531 TLMDAYCKSGEMDKAQEILKE------------------MLGKGLQPTIVTFNVLMNGFC 572

Query: 410 QASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMI 469
               LE+   L   M  KG +P   ++N+L+   C       A +  K+M  +G  PD  
Sbjct: 573 LHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGK 632

Query: 470 TYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNM 529
           TY  L+ G C+++ +  A  L  +   KGF+  V+ Y++LI G     K  +A +++  M
Sbjct: 633 TYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQM 692

Query: 530 KKRNCVPNLVTYNTLMDGLFKTGDCDKALE-----IWNHILEERLR 570
           ++     +   ++   D  +K    D  ++     I N++++E+LR
Sbjct: 693 RREGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEIIENYLVDEQLR 738



 Score =  200 bits (508), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 134/489 (27%), Positives = 230/489 (47%), Gaps = 21/489 (4%)

Query: 130 GLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA 189
           G  P V+        LV  G L  A  VF++M   G+  +V   N+ +    K       
Sbjct: 172 GSDPRVFD--VFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTAT 229

Query: 190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIH 249
             I  R   E  V  NV +YN++I+ +C+ GR  E   +   M+      D  +Y + ++
Sbjct: 230 AIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVN 289

Query: 250 GLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL- 308
           G C+ G ++   ++   M   G+  ++  Y ++I   CR  K+ E  E +  M R+G L 
Sbjct: 290 GYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILP 349

Query: 309 NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQIL 368
           + V Y  LI G  + G +  A   +  +  ++   D  T+  +I+G C         QI 
Sbjct: 350 DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFC---------QI- 399

Query: 369 NEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKG 428
                   G + +A  L + M   G + ++ T   L+NG+ +A  +++A  +   M + G
Sbjct: 400 --------GDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAG 451

Query: 429 CSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMAL 488
           CSP VV+Y TLI+GLCK      A   + EM + G +P++ TY+ ++NGLC+S  I+ A+
Sbjct: 452 CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 511

Query: 489 KLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGL 548
           KL  +F   G   D   Y  L+   C +G+++ A ++   M  +   P +VT+N LM+G 
Sbjct: 512 KLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGF 571

Query: 549 FKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTT 608
              G  +   ++ N +L + + P+  ++N  +K  C  + +  A     D   RG+ P  
Sbjct: 572 CLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDG 631

Query: 609 ITWHILVRA 617
            T+  LV+ 
Sbjct: 632 KTYENLVKG 640



 Score =  197 bits (502), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 131/462 (28%), Positives = 226/462 (48%), Gaps = 34/462 (7%)

Query: 60  ILELIEIQKCYCPEDVALS-VIQAYGKNSMPDKALDVFQRMNE--------IFGCEAGIL 110
           +L L+E+ K Y P+ ++ S V+  Y +    DK   + + M          I+G   G+L
Sbjct: 268 LLLLMEL-KGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLL 326

Query: 111 CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNV 170
           CR  +  +A+   + +  +G+ PD   Y T+I+G  K GD+  A   F EM  R +  +V
Sbjct: 327 CRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDV 386

Query: 171 VCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWD 230
           + Y  +I GF + GD + A +++  +  +  + P+ VT+  +ING CK G   +   + +
Sbjct: 387 LTYTAIISGFCQIGDMVEAGKLFHEMFCK-GLEPDSVTFTELINGYCKAGHMKDAFRVHN 445

Query: 231 RMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAG 290
            M +     +  TY + I GLCK G+++ A  +  EM + G+  +  TYN++++G C++G
Sbjct: 446 HMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSG 505

Query: 291 KIKECFEL---WEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTT 347
            I+E  +L   +E  G     + V+Y  L+    ++G++D+A  I + +  K       T
Sbjct: 506 NIEEAVKLVGEFEAAGLNA--DTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVT 563

Query: 348 HGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNG 407
             VL+NG C +G L                   D   L+N M   G   NA T NSL+  
Sbjct: 564 FNVLMNGFCLHGMLE------------------DGEKLLNWMLAKGIAPNATTFNSLVKQ 605

Query: 408 FIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPD 467
           +   + L+ A  ++K+M  +G  P   +Y  L+ G CK     EA+   +EM  KG+   
Sbjct: 606 YCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVS 665

Query: 468 MITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNIL 509
           + TYS+LI G  + KK   A ++  Q  ++G   D  +++  
Sbjct: 666 VSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFF 707



 Score =  184 bits (468), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 120/388 (30%), Positives = 190/388 (48%), Gaps = 26/388 (6%)

Query: 240 DSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMI-----DGFCRAGKIKE 294
           D   +  F   L   G +  A RV+ +M+  G+ +   + N  +     D +  A  I  
Sbjct: 174 DPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIV 233

Query: 295 CFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLING 354
             E  EV     C NV SYNI+I  + + G++ EA  +  L+  K    D  ++  ++NG
Sbjct: 234 FREFPEV---GVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNG 290

Query: 355 LCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKL 414
            C+ G L+K  +                  L+  M + G K N+Y   S++    +  KL
Sbjct: 291 YCRFGELDKVWK------------------LIEVMKRKGLKPNSYIYGSIIGLLCRICKL 332

Query: 415 ENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLL 474
             A   F EM R+G  P  V Y TLI+G CK      A  F  EM  +   PD++TY+ +
Sbjct: 333 AEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAI 392

Query: 475 INGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNC 534
           I+G CQ   +  A KL  +   KG  PD   +  LI+G C AG ++DA +++++M +  C
Sbjct: 393 ISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGC 452

Query: 535 VPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFE 594
            PN+VTY TL+DGL K GD D A E+ + + +  L+P+I +YN  + GLC    + +A +
Sbjct: 453 SPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVK 512

Query: 595 FLNDALCRGILPTTITWHILVRAVMNNG 622
            + +    G+   T+T+  L+ A   +G
Sbjct: 513 LVGEFEAAGLNADTVTYTTLMDAYCKSG 540


>sp|Q9LVD3|PP434_ARATH Pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial OS=Arabidopsis thaliana GN=At5g57250 PE=2
           SV=2
          Length = 971

 Score =  226 bits (577), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 179/700 (25%), Positives = 313/700 (44%), Gaps = 97/700 (13%)

Query: 17  NPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPED-- 74
           +P   L +     R  G   S   F  ++ R ++   + +   +LE++  +    P D  
Sbjct: 113 DPSKGLLILRDCLRNHGAFPSSLTFCSLIYRFVEKGEMDNAIEVLEMMTNKNVNYPFDNF 172

Query: 75  VALSVIQAYGKNSMPDKALDVFQRMNE---------IFGCEAGILCRKRQFEKAKRFLNS 125
           V  +VI  + K   P+ AL  F+   +          +      LC+  + ++ +  +  
Sbjct: 173 VCSAVISGFCKIGKPELALGFFESAVDSGVLVPNLVTYTTLVSALCQLGKVDEVRDLVRR 232

Query: 126 LWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGD 185
           L ++G + D   Y   I+G  K G L+ AL    EM E+G+  +VV Y+ILIDG  K+G+
Sbjct: 233 LEDEGFEFDCVFYSNWIHGYFKGGALVDALMQDREMVEKGMNRDVVSYSILIDGLSKEGN 292

Query: 186 YMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYC 245
              A  +  +++ E  V PN++TY  +I GLCK G+ +E   +++R+     E D F Y 
Sbjct: 293 VEEALGLLGKMIKE-GVEPNLITYTAIIRGLCKMGKLEEAFVLFNRILSVGIEVDEFLYV 351

Query: 246 SFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFE-------- 297
           + I G+C+ GN+  A  +  +M + GI    +TYN +I+G C AG++ E  E        
Sbjct: 352 TLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVINGLCMAGRVSEADEVSKGVVGD 411

Query: 298 -------------------LWEVMGR----KGCLNVVSYNILIRGLLENGKVDEAISIWE 334
                              + E+  R    K  +++V  NIL++  L  G   EA +++ 
Sbjct: 412 VITYSTLLDSYIKVQNIDAVLEIRRRFLEAKIPMDLVMCNILLKAFLLMGAYGEADALYR 471

Query: 335 LLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG----------------EGR 378
            + E +   D+ T+  +I G CK G + +A+++ NE+ +                  +G 
Sbjct: 472 AMPEMDLTPDTATYATMIKGYCKTGQIEEALEMFNELRKSSVSAAVCYNRIIDALCKKGM 531

Query: 379 LADAASLVNRMDKHGCKLNAYTCNSLMN------------GFI----------------- 409
           L  A  ++  + + G  L+ +T  +L++            G +                 
Sbjct: 532 LDTATEVLIELWEKGLYLDIHTSRTLLHSIHANGGDKGILGLVYGLEQLNSDVCLGMLND 591

Query: 410 ------QASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKG 463
                 +    E AI ++  M RKG + T  S  T++  L    R  +AY  V    E  
Sbjct: 592 AILLLCKRGSFEAAIEVYMIMRRKGLTVTFPS--TILKTLVDNLRSLDAYLLVVNAGETT 649

Query: 464 WKP-DMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDA 522
               D+I Y+++INGLC+   +  AL LC     +G T +   YN LI+GLC  G + +A
Sbjct: 650 LSSMDVIDYTIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEA 709

Query: 523 LQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKG 582
           L+L+ +++    VP+ VTY  L+D L K G    A ++ + ++ + L P+II YN  + G
Sbjct: 710 LRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDG 769

Query: 583 LCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
            C   +  DA   ++  +   + P   T   +++     G
Sbjct: 770 YCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKG 809



 Score =  191 bits (484), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 145/577 (25%), Positives = 242/577 (41%), Gaps = 92/577 (15%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
           L ++   E+A   L  + ++G++P++ +Y  +I GL K G L  A  +F+ +   G+E +
Sbjct: 287 LSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKMGKLEEAFVLFNRILSVGIEVD 346

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
              Y  LIDG  +KG+  RA  +   +  +  + P+++TYN +INGLC  GR  E  E+ 
Sbjct: 347 EFLYVTLIDGICRKGNLNRAFSMLGDM-EQRGIQPSILTYNTVINGLCMAGRVSEADEVS 405

Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEG------------------------------ 259
             +       D  TY + +    K  N++                               
Sbjct: 406 KGVVG-----DVITYSTLLDSYIKVQNIDAVLEIRRRFLEAKIPMDLVMCNILLKAFLLM 460

Query: 260 -----AERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYN 314
                A+ +YR M E  +  D  TY  MI G+C+ G+I+E  E++  + +      V YN
Sbjct: 461 GAYGEADALYRAMPEMDLTPDTATYATMIKGYCKTGQIEEALEMFNELRKSSVSAAVCYN 520

Query: 315 ILIRGLLENGKVDEAISIWELLREKNCNADSTT-----HGVLING--------------- 354
            +I  L + G +D A  +   L EK    D  T     H +  NG               
Sbjct: 521 RIIDALCKKGMLDTATEVLIELWEKGLYLDIHTSRTLLHSIHANGGDKGILGLVYGLEQL 580

Query: 355 ---------------LCKNGYLNKAIQILNEVEEGG---------------EGRLADAAS 384
                          LCK G    AI++   +   G                 R  DA  
Sbjct: 581 NSDVCLGMLNDAILLLCKRGSFEAAIEVYMIMRRKGLTVTFPSTILKTLVDNLRSLDAYL 640

Query: 385 LV-NRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGL 443
           LV N  +     ++      ++NG  +   L  A+ L      +G +   ++YN+LINGL
Sbjct: 641 LVVNAGETTLSSMDVIDYTIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGL 700

Query: 444 CKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDV 503
           C+     EA      +   G  P  +TY +LI+ LC+      A KL    + KG  P++
Sbjct: 701 CQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNI 760

Query: 504 TMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNH 563
            +YN ++ G C  G+ EDA+++ S        P+  T ++++ G  K GD ++AL ++  
Sbjct: 761 IIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDMEEALSVFTE 820

Query: 564 ILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDAL 600
             ++ +  D   +   +KG C+  RM +A   L + L
Sbjct: 821 FKDKNISADFFGFLFLIKGFCTKGRMEEARGLLREML 857



 Score =  173 bits (439), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 140/559 (25%), Positives = 249/559 (44%), Gaps = 64/559 (11%)

Query: 123 LNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFK 182
           L SL + G  P + S    +  L +       L  + ++  + +  N   Y+I+   F  
Sbjct: 14  LQSLLKSGFSPTLNSIDRFLRYLYRLQKFNCILQFYSQLDSKQININHRIYSIVSWAFLN 73

Query: 183 KGDYMRAKEIWERLVMETSVYPNVVTYNVMING--------------------------- 215
              Y  A++     + + S++P     + +I+G                           
Sbjct: 74  LNRYEDAEKFINIHISKASIFPRTHMLDSLIHGFSITRDDPSKGLLILRDCLRNHGAFPS 133

Query: 216 -LCKC---------GRFDECLEMWDRM--KKNEREKDSFTYCSFIHGLCKAGNVEGAERV 263
            L  C         G  D  +E+ + M  K      D+F   + I G CK G  E A   
Sbjct: 134 SLTFCSLIYRFVEKGEMDNAIEVLEMMTNKNVNYPFDNFVCSAVISGFCKIGKPELALGF 193

Query: 264 YREMVESGIFV-DAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-LNVVSYNILIRGLL 321
           +   V+SG+ V + VTY  ++   C+ GK+ E  +L   +  +G   + V Y+  I G  
Sbjct: 194 FESAVDSGVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGYF 253

Query: 322 ENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNE-VEEGGE---- 376
           + G + +A+     + EK  N D  ++ +LI+GL K G + +A+ +L + ++EG E    
Sbjct: 254 KGGALVDALMQDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLI 313

Query: 377 ------------GRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEM 424
                       G+L +A  L NR+   G +++ +   +L++G  +   L  A  +  +M
Sbjct: 314 TYTAIIRGLCKMGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDM 373

Query: 425 SRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKI 484
            ++G  P++++YNT+INGLC   R  EA     + + KG   D+ITYS L++   + + I
Sbjct: 374 EQRGIQPSILTYNTVINGLCMAGRVSEA-----DEVSKGVVGDVITYSTLLDSYIKVQNI 428

Query: 485 DMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTL 544
           D  L++  +FL+     D+ M NIL+      G   +A  LY  M + +  P+  TY T+
Sbjct: 429 DAVLEIRRRFLEAKIPMDLVMCNILLKAFLLMGAYGEADALYRAMPEMDLTPDTATYATM 488

Query: 545 MDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGI 604
           + G  KTG  ++ALE++N + +  +    + YN  +  LC    +  A E L +   +G+
Sbjct: 489 IKGYCKTGQIEEALEMFNELRKSSVSA-AVCYNRIIDALCKKGMLDTATEVLIELWEKGL 547

Query: 605 LPTTITWHILVRAVMNNGA 623
                T   L+ ++  NG 
Sbjct: 548 YLDIHTSRTLLHSIHANGG 566



 Score =  158 bits (399), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 137/599 (22%), Positives = 249/599 (41%), Gaps = 98/599 (16%)

Query: 24  LFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAY 83
           L D  ++E     +  L   +++  ++P L+ + + I  L ++ K      V  + I + 
Sbjct: 283 LIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKMGKLE-EAFVLFNRILSV 341

Query: 84  GKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVIN 143
           G        +D F  +  I G     +CRK    +A   L  + ++G++P + +Y TVIN
Sbjct: 342 GIE------VDEFLYVTLIDG-----ICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVIN 390

Query: 144 GL------------------------------VKSGDLLGALAVFDEMFERGVETNVVCY 173
           GL                              +K  ++   L +     E  +  ++V  
Sbjct: 391 GLCMAGRVSEADEVSKGVVGDVITYSTLLDSYIKVQNIDAVLEIRRRFLEAKIPMDLVMC 450

Query: 174 NILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMK 233
           NIL+  F   G Y  A  ++ R + E  + P+  TY  MI G CK G+ +E LEM++ ++
Sbjct: 451 NILLKAFLLMGAYGEADALY-RAMPEMDLTPDTATYATMIKGYCKTGQIEEALEMFNELR 509

Query: 234 KNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDG-------- 285
           K+     +  Y   I  LCK G ++ A  V  E+ E G+++D  T   ++          
Sbjct: 510 KSSVSA-AVCYNRIIDALCKKGMLDTATEVLIELWEKGLYLDIHTSRTLLHSIHANGGDK 568

Query: 286 ---------------------------FCRAGKIKECFELWEVMGRKGCLNVVSYNILIR 318
                                       C+ G  +   E++ +M RKG L V   + +++
Sbjct: 569 GILGLVYGLEQLNSDVCLGMLNDAILLLCKRGSFEAAIEVYMIMRRKG-LTVTFPSTILK 627

Query: 319 GLLENGK-VDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG-- 375
            L++N + +D  + +         + D   + ++INGLCK G+L KA+ + +  +  G  
Sbjct: 628 TLVDNLRSLDAYLLVVNAGETTLSSMDVIDYTIIINGLCKEGFLVKALNLCSFAKSRGVT 687

Query: 376 ---------------EGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFL 420
                          +G L +A  L + ++  G   +  T   L++   +     +A  L
Sbjct: 688 LNTITYNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKL 747

Query: 421 FKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQ 480
              M  KG  P ++ YN++++G CK+ +  +A   V   +     PD  T S +I G C+
Sbjct: 748 LDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCK 807

Query: 481 SKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLV 539
              ++ AL +  +F  K  + D   +  LI G C+ G++E+A  L   M     V  L+
Sbjct: 808 KGDMEEALSVFTEFKDKNISADFFGFLFLIKGFCTKGRMEEARGLLREMLVSESVVKLI 866



 Score = 49.3 bits (116), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 21/209 (10%)

Query: 111 CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNV 170
           C+  Q E A R ++      + PD ++  ++I G  K GD+  AL+VF E  ++ +  + 
Sbjct: 771 CKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISADF 830

Query: 171 VCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNV------VTYNVMING----LCKCG 220
             +  LI GF  KG    A+ +   +++  SV   +      +  +  I G    LC+ G
Sbjct: 831 FGFLFLIKGFCTKGRMEEARGLLREMLVSESVVKLINRVDAELAESESIRGFLVELCEQG 890

Query: 221 RFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFV-DAVTY 279
           R  + +++ D       E  S  Y S    L     ++    V  E ++   +V D  + 
Sbjct: 891 RVPQAIKILD-------EISSTIYPSG-KNLGSYQRLQFLNDVNEEEIKKKDYVHDFHSL 942

Query: 280 NAMIDGFCRAGKIKECFELWEVMGRKGCL 308
           ++ +   C +GK+++  E   VM    C+
Sbjct: 943 HSTVSSLCTSGKLEQANEF--VMSVLSCM 969


>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic
            OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
          Length = 1112

 Score =  223 bits (568), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 159/553 (28%), Positives = 280/553 (50%), Gaps = 79/553 (14%)

Query: 78   SVIQAYGKNSMPDKALDVFQRM------------NEIFGCEAGILCRKRQFEKAKRFLNS 125
            +++   GKN    +A+++F+ M            N +F C    LC+  +   A + L  
Sbjct: 578  TLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDC----LCKNDEVTLALKMLFK 633

Query: 126  LWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGD 185
            + + G  PDV++Y T+I GLVK+G +  A+  F +M ++ V  + V    L+ G  K   
Sbjct: 634  MMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQM-KKLVYPDFVTLCTLLPGVVKASL 692

Query: 186  YMRAKEI----------------WERLV---METSVYPNVVTYN--VMINGLCKCGRFDE 224
               A +I                WE L+   +  +   N V+++  ++ NG+C+ G  D 
Sbjct: 693  IEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDG--DS 750

Query: 225  CL-----------------EMWDRMKKNEREKDSF-TYCSFIHGLCKAGNVEGAERVYRE 266
             L                  ++++  K+   +    TY   I GL +A  +E A+ V+ +
Sbjct: 751  ILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQ 810

Query: 267  MVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGK 325
            +  +G   D  TYN ++D + ++GKI E FEL++ M    C  N +++NI+I GL++ G 
Sbjct: 811  VKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGN 870

Query: 326  VDEAISIW-ELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAAS 384
            VD+A+ ++ +L+ +++ +  + T+G LI+GL K+G                  RL +A  
Sbjct: 871  VDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSG------------------RLYEAKQ 912

Query: 385  LVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLC 444
            L   M  +GC+ N    N L+NGF +A + + A  LFK M ++G  P + +Y+ L++ LC
Sbjct: 913  LFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLC 972

Query: 445  KVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQF-LQKGFTPDV 503
             V R  E   + KE+ E G  PD++ Y+L+INGL +S +++ AL L  +    +G TPD+
Sbjct: 973  MVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDL 1032

Query: 504  TMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNH 563
              YN LI  L  AG VE+A ++Y+ +++    PN+ T+N L+ G   +G  + A  ++  
Sbjct: 1033 YTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQT 1092

Query: 564  ILEERLRPDIISY 576
            ++     P+  +Y
Sbjct: 1093 MVTGGFSPNTGTY 1105



 Score =  218 bits (556), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 155/626 (24%), Positives = 296/626 (47%), Gaps = 31/626 (4%)

Query: 4   SAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRL-IDPKLVVHVSRILE 62
           S++ +   LK+  +  ++ + F S        H+    +++L  L +D KL   ++ + +
Sbjct: 84  SSEEVTRGLKSFPDTDSSFSYFKSVAGNLNLVHTTETCNYMLEALRVDGKLE-EMAYVFD 142

Query: 63  LIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEI--------FGCEAGILCRKR 114
           L++ +      +  L++ ++        +A    ++M E         +     +L + R
Sbjct: 143 LMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSR 202

Query: 115 QFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYN 174
              +A      +  +G +P + +Y +++ GL K  D+   + +  EM   G++ NV  + 
Sbjct: 203 FCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFT 262

Query: 175 ILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKK 234
           I I    + G    A EI +R+  E    P+VVTY V+I+ LC   + D   E++++MK 
Sbjct: 263 ICIRVLGRAGKINEAYEILKRMDDE-GCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKT 321

Query: 235 NEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKE 294
              + D  TY + +       +++  ++ + EM + G   D VT+  ++D  C+AG   E
Sbjct: 322 GRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGE 381

Query: 295 CFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLIN 353
            F+  +VM  +G L N+ +YN LI GLL   ++D+A+ ++  +        + T+ V I+
Sbjct: 382 AFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFID 441

Query: 354 GLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASK 413
              K+G    ++  L   E               +M   G   N   CN+ +    +A +
Sbjct: 442 YYGKSG---DSVSALETFE---------------KMKTKGIAPNIVACNASLYSLAKAGR 483

Query: 414 LENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSL 473
              A  +F  +   G  P  V+YN ++    KV    EA   + EM+E G +PD+I  + 
Sbjct: 484 DREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNS 543

Query: 474 LINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRN 533
           LIN L ++ ++D A K+  +  +    P V  YN L+ GL   GK+++A++L+  M ++ 
Sbjct: 544 LINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKG 603

Query: 534 CVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAF 593
           C PN +T+NTL D L K  +   AL++   +++    PD+ +YN  + GL    ++ +A 
Sbjct: 604 CPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAM 663

Query: 594 EFLNDALCRGILPTTITWHILVRAVM 619
            F +  + + + P  +T   L+  V+
Sbjct: 664 CFFHQ-MKKLVYPDFVTLCTLLPGVV 688



 Score =  206 bits (524), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 156/603 (25%), Positives = 292/603 (48%), Gaps = 74/603 (12%)

Query: 72   PEDVALSVI-QAYGKNSMPDKALDVFQRMNEIFGCEAGI---------LCRKRQFEKAKR 121
            P+ V  +++ + Y K    D+A+ +   M E  GCE  +         L +  + ++A +
Sbjct: 501  PDSVTYNMMMKCYSKVGEIDEAIKLLSEMME-NGCEPDVIVVNSLINTLYKADRVDEAWK 559

Query: 122  FLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFF 181
                + E  LKP V +Y T++ GL K+G +  A+ +F+ M ++G   N + +N L D   
Sbjct: 560  MFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLC 619

Query: 182  KKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDS 241
            K  +   A ++  ++ M+    P+V TYN +I GL K G+  E +  + +MKK     D 
Sbjct: 620  KNDEVTLALKMLFKM-MDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKK-LVYPDF 677

Query: 242  FTYCSFIHGLCKAGNVEGAERVYRE---------------------MVESGIFVDAVTYN 280
             T C+ + G+ KA  +E A ++                        + E+GI  +AV+++
Sbjct: 678  VTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGI-DNAVSFS 736

Query: 281  AMI--DGFCRAGK------IKECFELWEVMGRKGCL-----------NVVSYNILIRGLL 321
              +  +G CR G       I+   +   V G +               + +YN+LI GLL
Sbjct: 737  ERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLL 796

Query: 322  ENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLAD 381
            E   ++ A  ++  ++   C  D  T+  L++   K+G +++  ++  E           
Sbjct: 797  EADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKE----------- 845

Query: 382  AASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKE-MSRKGCSPTVVSYNTLI 440
                   M  H C+ N  T N +++G ++A  +++A+ L+ + MS +  SPT  +Y  LI
Sbjct: 846  -------MSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLI 898

Query: 441  NGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFT 500
            +GL K  R  EA    + ML+ G +P+   Y++LING  ++ + D A  L  + +++G  
Sbjct: 899  DGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVR 958

Query: 501  PDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEI 560
            PD+  Y++L+  LC  G+V++ L  +  +K+    P++V YN +++GL K+   ++AL +
Sbjct: 959  PDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVL 1018

Query: 561  WNHILEER-LRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVM 619
            +N +   R + PD+ +YN  +  L     + +A +  N+    G+ P   T++ L+R   
Sbjct: 1019 FNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYS 1078

Query: 620  NNG 622
             +G
Sbjct: 1079 LSG 1081



 Score =  202 bits (515), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 163/665 (24%), Positives = 299/665 (44%), Gaps = 87/665 (13%)

Query: 25  FDSATREPGYAHSPHLFHHILRRLID----PKLVVHVSRILELIEIQKCYCPEDV----- 75
           F    R  G A   +  + IL+R+ D    P +V +   I  L   +K  C ++V     
Sbjct: 261 FTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMK 320

Query: 76  ----------ALSVIQAYGKNSMPDKALDVFQRMNE--------IFGCEAGILCRKRQFE 117
                      ++++  +  N   D     +  M +         F      LC+   F 
Sbjct: 321 TGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFG 380

Query: 118 KAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILI 177
           +A   L+ + ++G+ P++++Y T+I GL++   L  AL +F  M   GV+     Y + I
Sbjct: 381 EAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFI 440

Query: 178 DGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNER 237
           D + K GD + A E +E++  +  + PN+V  N  +  L K GR  E  +++  +K    
Sbjct: 441 DYYGKSGDSVSALETFEKMKTK-GIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGL 499

Query: 238 EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFE 297
             DS TY   +    K G ++ A ++  EM+E+G   D +  N++I+   +A ++ E ++
Sbjct: 500 VPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWK 559

Query: 298 LWEVMGR-KGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLC 356
           ++  M   K    VV+YN L+ GL +NGK+ EAI ++E + +K C  ++ T   L + LC
Sbjct: 560 MFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLC 619

Query: 357 KNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLEN 416
           KN  +  A+++L                   +M   GC  + +T N+++ G ++  +++ 
Sbjct: 620 KNDEVTLALKML------------------FKMMDMGCVPDVFTYNTIIFGLVKNGQVKE 661

Query: 417 AIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVK------------------- 457
           A+  F +M +K   P  V+  TL+ G+ K     +AY  +                    
Sbjct: 662 AMCFFHQM-KKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLI 720

Query: 458 -EMLEKGWKPDMITYS--LLINGLCQS---------------KKIDMALKLCCQFLQK-G 498
             +L +    + +++S  L+ NG+C+                  +  A  L  +F +  G
Sbjct: 721 GSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLG 780

Query: 499 FTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKAL 558
             P +  YN+LI GL  A  +E A  ++  +K   C+P++ TYN L+D   K+G  D+  
Sbjct: 781 VQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELF 840

Query: 559 EIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALC-RGILPTTITWHILVRA 617
           E++  +       + I++NI + GL     + DA +   D +  R   PT  T+  L+  
Sbjct: 841 ELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDG 900

Query: 618 VMNNG 622
           +  +G
Sbjct: 901 LSKSG 905



 Score =  201 bits (512), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 140/527 (26%), Positives = 250/527 (47%), Gaps = 21/527 (3%)

Query: 115 QFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYN 174
           + E+     + + ++ +K D  +Y T+   L   G L  A     +M E G   N   YN
Sbjct: 133 KLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYN 192

Query: 175 ILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKK 234
            LI    K      A E++ R+++E    P++ TY+ ++ GL K    D  + +   M+ 
Sbjct: 193 GLIHLLLKSRFCTEAMEVYRRMILE-GFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMET 251

Query: 235 NEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKE 294
              + + +T+   I  L +AG +  A  + + M + G   D VTY  +ID  C A K+  
Sbjct: 252 LGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDC 311

Query: 295 CFELWEVM--GRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLI 352
             E++E M  GR    + V+Y  L+    +N  +D     W  + +     D  T  +L+
Sbjct: 312 AKEVFEKMKTGRHKP-DRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILV 370

Query: 353 NGLCKNGYLNKAIQILNEVEEGG-----------------EGRLADAASLVNRMDKHGCK 395
           + LCK G   +A   L+ + + G                   RL DA  L   M+  G K
Sbjct: 371 DALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVK 430

Query: 396 LNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSF 455
             AYT    ++ + ++    +A+  F++M  KG +P +V+ N  +  L K  R  EA   
Sbjct: 431 PTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQI 490

Query: 456 VKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCS 515
              + + G  PD +TY++++    +  +ID A+KL  + ++ G  PDV + N LI+ L  
Sbjct: 491 FYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYK 550

Query: 516 AGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIIS 575
           A +V++A +++  MK+    P +VTYNTL+ GL K G   +A+E++  ++++   P+ I+
Sbjct: 551 ADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTIT 610

Query: 576 YNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
           +N     LC    ++ A + L   +  G +P   T++ ++  ++ NG
Sbjct: 611 FNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNG 657



 Score =  199 bits (505), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 152/589 (25%), Positives = 271/589 (46%), Gaps = 72/589 (12%)

Query: 15  EKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEI--QKCYCP 72
           +++ +T L +F S + + G   +P+     LR++ +   V++      LI +  +  +C 
Sbjct: 150 KRDTNTYLTIFKSLSVKGGLKQAPY----ALRKMREFGFVLNAYSYNGLIHLLLKSRFCT 205

Query: 73  EDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLK 132
           E      ++ Y +       L+ F+   + +      L ++R  +     L  +   GLK
Sbjct: 206 E-----AMEVYRR-----MILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLK 255

Query: 133 PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDG------------- 179
           P+VY++   I  L ++G +  A  +   M + G   +VV Y +LID              
Sbjct: 256 PNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEV 315

Query: 180 ----------------------FFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLC 217
                                 F    D    K+ W  +  +  V P+VVT+ ++++ LC
Sbjct: 316 FEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHV-PDVVTFTILVDALC 374

Query: 218 KCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAV 277
           K G F E  +  D M+      +  TY + I GL +   ++ A  ++  M   G+   A 
Sbjct: 375 KAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAY 434

Query: 278 TYNAMIDGFCRAGKIKECFELWEVMGRKG-CLNVVSYNILIRGLLENGKVDEAISIWELL 336
           TY   ID + ++G      E +E M  KG   N+V+ N  +  L + G+  EA  I+  L
Sbjct: 435 TYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGL 494

Query: 337 REKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKL 396
           ++     DS T+ +++    K G +++AI++L+E+ E                  +GC+ 
Sbjct: 495 KDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMME------------------NGCEP 536

Query: 397 NAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFV 456
           +    NSL+N   +A +++ A  +F  M      PTVV+YNTL+ GL K  +  EA    
Sbjct: 537 DVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELF 596

Query: 457 KEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSA 516
           + M++KG  P+ IT++ L + LC++ ++ +ALK+  + +  G  PDV  YN +I GL   
Sbjct: 597 EGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKN 656

Query: 517 GKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHIL 565
           G+V++A+  +  MKK    P+ VT  TL+ G+ K    + A +I  + L
Sbjct: 657 GQVKEAMCFFHQMKKL-VYPDFVTLCTLLPGVVKASLIEDAYKIITNFL 704



 Score =  155 bits (392), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 188/388 (48%), Gaps = 38/388 (9%)

Query: 126  LWEKGLKPDV-YSYGTVINGLVKSGDLL---------------GALAVFDEMF-ERGVET 168
            L E G+   V +S   V NG+ + GD +               GA  +F++   + GV+ 
Sbjct: 724  LAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQP 783

Query: 169  NVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEM 228
             +  YN+LI G  +      A++++ + V  T   P+V TYN +++   K G+ DE  E+
Sbjct: 784  KLPTYNLLIGGLLEADMIEIAQDVFLQ-VKSTGCIPDVATYNFLLDAYGKSGKIDELFEL 842

Query: 229  WDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVD-AVTYNAMIDGFC 287
            +  M  +E E ++ T+   I GL KAGNV+ A  +Y +++    F   A TY  +IDG  
Sbjct: 843  YKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLS 902

Query: 288  RAGKIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADST 346
            ++G++ E  +L+E M   GC  N   YNILI G  + G+ D A ++++ + ++    D  
Sbjct: 903  KSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLK 962

Query: 347  THGVLINGLCKNGYLNKAIQILNEVEEGG-----------------EGRLADAASLVNRM 389
            T+ VL++ LC  G +++ +    E++E G                   RL +A  L N M
Sbjct: 963  TYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEM 1022

Query: 390  D-KHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVER 448
                G   + YT NSL+     A  +E A  ++ E+ R G  P V ++N LI G     +
Sbjct: 1023 KTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGK 1082

Query: 449  FGEAYSFVKEMLEKGWKPDMITYSLLIN 476
               AY+  + M+  G+ P+  TY  L N
Sbjct: 1083 PEHAYAVYQTMVTGGFSPNTGTYEQLPN 1110



 Score =  133 bits (334), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 165/340 (48%), Gaps = 21/340 (6%)

Query: 306 GCLNVV----SYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYL 361
           G LN+V    + N ++  L  +GK++E   +++L++++    D+ T+  +   L   G L
Sbjct: 110 GNLNLVHTTETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGL 169

Query: 362 NKAIQILNEVEEGG----------------EGRL-ADAASLVNRMDKHGCKLNAYTCNSL 404
            +A   L ++ E G                + R   +A  +  RM   G + +  T +SL
Sbjct: 170 KQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSL 229

Query: 405 MNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGW 464
           M G  +   +++ + L KEM   G  P V ++   I  L +  +  EAY  +K M ++G 
Sbjct: 230 MVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGC 289

Query: 465 KPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQ 524
            PD++TY++LI+ LC ++K+D A ++  +       PD   Y  L+        ++   Q
Sbjct: 290 GPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQ 349

Query: 525 LYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLC 584
            +S M+K   VP++VT+  L+D L K G+  +A +  + + ++ + P++ +YN  + GL 
Sbjct: 350 FWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLL 409

Query: 585 SCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNGAS 624
              R+ DA E   +    G+ PT  T+ + +     +G S
Sbjct: 410 RVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDS 449


>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
           mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
           SV=1
          Length = 528

 Score =  223 bits (568), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 135/497 (27%), Positives = 243/497 (48%), Gaps = 33/497 (6%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
            CR+R F                   Y Y  V+   +   +L  A+ +F  M +     +
Sbjct: 32  FCRRRAFSGKTS--------------YDYREVLRTGLSDIELDDAIGLFGVMAQSRPFPS 77

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
           ++ ++ L+    K   +       E++ +   +  N+ TYN++IN  C+C R    L + 
Sbjct: 78  IIEFSKLLSAIAKMNKFDLVISFGEKMEI-LGISHNLYTYNILINCFCRCSRLSLALALL 136

Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
            +M K   E D  T  S ++G C    +  A  +  +MVE G   D VT+  +I G    
Sbjct: 137 GKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLH 196

Query: 290 GKIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348
            K  E   L + M ++GC  ++V+Y  ++ GL + G  D A+++   +      A+   +
Sbjct: 197 NKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIY 256

Query: 349 GVLINGLCKNGYLNKAIQILNEVEEGG-----------------EGRLADAASLVNRMDK 391
             +I+ LCK  + + A+ +  E+E  G                  GR +DA+ L++ M +
Sbjct: 257 STVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIE 316

Query: 392 HGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGE 451
                N  T ++L++ F++  KL  A  L++EM ++   P + +Y++LING C ++R GE
Sbjct: 317 RKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGE 376

Query: 452 AYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIH 511
           A   ++ M+ K   P+++TY+ LING C++K++D  ++L  +  Q+G   +   Y  LIH
Sbjct: 377 AKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIH 436

Query: 512 GLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP 571
           G   A   ++A  ++  M      PN++TYN L+DGL K G   KA+ ++ ++    + P
Sbjct: 437 GFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEP 496

Query: 572 DIISYNITLKGLCSCSR 588
           DI +YNI ++G+C   +
Sbjct: 497 DIYTYNIMIEGMCKAGK 513



 Score =  209 bits (533), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 233/448 (52%), Gaps = 24/448 (5%)

Query: 196 LVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAG 255
           ++ ++  +P+++ ++ +++ + K  +FD  +   ++M+      + +TY   I+  C+  
Sbjct: 68  VMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCS 127

Query: 256 NVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-LNVVSYN 314
            +  A  +  +M++ G   D VT N++++GFC   +I +   L + M   G   + V++ 
Sbjct: 128 RLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFT 187

Query: 315 ILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEG 374
            LI GL  + K  EA+++ + + ++ C  D  T+G ++NGLCK G  + A+ +LN++E  
Sbjct: 188 TLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAA 247

Query: 375 G-EGRLA----------------DAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENA 417
             E  +                 DA +L   M+  G + N  T +SL++      +  +A
Sbjct: 248 KIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDA 307

Query: 418 IFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLING 477
             L  +M  +  +P +V+++ LI+   K  +  +A    +EM+++   P++ TYS LING
Sbjct: 308 SRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLING 367

Query: 478 LCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN 537
            C   ++  A ++    ++K   P+V  YN LI+G C A +V+  ++L+  M +R  V N
Sbjct: 368 FCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGN 427

Query: 538 LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDA---FE 594
            VTY TL+ G F+  DCD A  ++  ++   + P+I++YNI L GLC   +++ A   FE
Sbjct: 428 TVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFE 487

Query: 595 FLNDALCRGILPTTITWHILVRAVMNNG 622
           +L  +      P   T++I++  +   G
Sbjct: 488 YLQRSTME---PDIYTYNIMIEGMCKAG 512



 Score =  192 bits (489), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 113/380 (29%), Positives = 196/380 (51%), Gaps = 22/380 (5%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
            C   +   A   ++ + E G KPD  ++ T+I+GL        A+A+ D M +RG + +
Sbjct: 158 FCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPD 217

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETS-VYPNVVTYNVMINGLCKCGRFDECLEM 228
           +V Y  +++G  K+GD   A  +  +  ME + +  NVV Y+ +I+ LCK    D+ L +
Sbjct: 218 LVTYGAVVNGLCKRGDTDLALNLLNK--MEAAKIEANVVIYSTVIDSLCKYRHEDDALNL 275

Query: 229 WDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR 288
           +  M+      +  TY S I  LC  G    A R+  +M+E  I  + VT++A+ID F +
Sbjct: 276 FTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVK 335

Query: 289 AGKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTT 347
            GK+ +  +L+E M ++    N+ +Y+ LI G     ++ EA  + EL+  K+C  +  T
Sbjct: 336 KGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVT 395

Query: 348 HGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNG 407
           +  LING CK   ++K +++  E                  M + G   N  T  +L++G
Sbjct: 396 YNTLINGFCKAKRVDKGMELFRE------------------MSQRGLVGNTVTYTTLIHG 437

Query: 408 FIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPD 467
           F QA   +NA  +FK+M   G  P +++YN L++GLCK  +  +A    + +     +PD
Sbjct: 438 FFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPD 497

Query: 468 MITYSLLINGLCQSKKIDMA 487
           + TY+++I G+C++ K  M 
Sbjct: 498 IYTYNIMIEGMCKAGKWKMG 517



 Score =  159 bits (402), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 186/370 (50%), Gaps = 17/370 (4%)

Query: 2   VISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRIL 61
           +++   LLN          A+AL D    E GY      F  ++  L    L    S  +
Sbjct: 148 IVTLNSLLNGFCHGNRISDAVALVDQMV-EMGYKPDTVTFTTLIHGLF---LHNKASEAV 203

Query: 62  ELIE--IQKCYCPEDVAL-SVIQAYGKNSMPDKALDVFQRMNE--------IFGCEAGIL 110
            LI+  +Q+   P+ V   +V+    K    D AL++  +M          I+      L
Sbjct: 204 ALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSL 263

Query: 111 CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNV 170
           C+ R  + A      +  KG++P+V +Y ++I+ L   G    A  +  +M ER +  N+
Sbjct: 264 CKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNL 323

Query: 171 VCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWD 230
           V ++ LID F KKG  ++A++++E ++ + S+ PN+ TY+ +ING C   R  E  +M +
Sbjct: 324 VTFSALIDAFVKKGKLVKAEKLYEEMI-KRSIDPNIFTYSSLINGFCMLDRLGEAKQMLE 382

Query: 231 RMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAG 290
            M + +   +  TY + I+G CKA  V+    ++REM + G+  + VTY  +I GF +A 
Sbjct: 383 LMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQAR 442

Query: 291 KIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHG 349
                  +++ M   G   N+++YNIL+ GL +NGK+ +A+ ++E L+      D  T+ 
Sbjct: 443 DCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYN 502

Query: 350 VLINGLCKNG 359
           ++I G+CK G
Sbjct: 503 IMIEGMCKAG 512



 Score =  150 bits (379), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 176/344 (51%), Gaps = 20/344 (5%)

Query: 291 KIKECFELWEVMGR-KGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHG 349
           ++ +   L+ VM + +   +++ ++ L+  + +  K D  IS  E +     + +  T+ 
Sbjct: 58  ELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYN 117

Query: 350 VLINGLC----------------KNGYLNKAIQILNEVEEG--GEGRLADAASLVNRMDK 391
           +LIN  C                K GY    I  LN +  G     R++DA +LV++M +
Sbjct: 118 ILINCFCRCSRLSLALALLGKMMKLGY-EPDIVTLNSLLNGFCHGNRISDAVALVDQMVE 176

Query: 392 HGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGE 451
            G K +  T  +L++G    +K   A+ L   M ++GC P +V+Y  ++NGLCK      
Sbjct: 177 MGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDL 236

Query: 452 AYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIH 511
           A + + +M     + +++ YS +I+ LC+ +  D AL L  +   KG  P+V  Y+ LI 
Sbjct: 237 ALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLIS 296

Query: 512 GLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP 571
            LC+ G+  DA +L S+M +R   PNLVT++ L+D   K G   KA +++  +++  + P
Sbjct: 297 CLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDP 356

Query: 572 DIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILV 615
           +I +Y+  + G C   R+ +A + L   + +  LP  +T++ L+
Sbjct: 357 NIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLI 400


>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
           SV=1
          Length = 880

 Score =  221 bits (564), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 153/529 (28%), Positives = 249/529 (47%), Gaps = 58/529 (10%)

Query: 150 DLLGALAVFDEMFER-GVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVT 208
           ++L  +  FDE+ E  G   N  CY+ L+    K      A   + R+  +  V   ++ 
Sbjct: 139 EMLKLMYCFDELREVFGFRLNYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVV-GMID 197

Query: 209 YNVMINGLCKCGRFDECLEMW-DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREM 267
           Y  ++N LCK G + E  EM+  ++ K     DS    S + G C+  N+  A +V+  M
Sbjct: 198 YRTIVNALCKNG-YTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVM 256

Query: 268 V-ESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGK 325
             E     ++V+Y+ +I G C  G+++E F L + MG KGC  +  +Y +LI+ L + G 
Sbjct: 257 SKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGL 316

Query: 326 VDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKA---------------IQILNE 370
           +D+A ++++ +  + C  +  T+ VLI+GLC++G + +A               +   N 
Sbjct: 317 IDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNA 376

Query: 371 VEEG--GEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKG 428
           +  G   +GR+  A  L+  M+K  CK N  T N LM G  +  K   A+ L K M   G
Sbjct: 377 LINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNG 436

Query: 429 CSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMAL 488
            SP +VSYN LI+GLC+      AY  +  M     +PD +T++ +IN  C+  K D+A 
Sbjct: 437 LSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVAS 496

Query: 489 KLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDA-------------------------- 522
                 L+KG + D      LI G+C  GK  DA                          
Sbjct: 497 AFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDML 556

Query: 523 ---------LQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI 573
                    L +   + K   VP++VTY TL+DGL ++GD   +  I   +      P++
Sbjct: 557 SKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNV 616

Query: 574 ISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
             Y I + GLC   R+ +A + L+     G+ P  +T+ ++V+  +NNG
Sbjct: 617 YPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNG 665



 Score =  220 bits (561), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 144/493 (29%), Positives = 253/493 (51%), Gaps = 20/493 (4%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMF-ERGVET 168
           LC+    E A+ F++ + + G   D +   +++ G  +  +L  AL VFD M  E     
Sbjct: 205 LCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAP 264

Query: 169 NVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEM 228
           N V Y+ILI G  + G    A  + +++  E    P+  TY V+I  LC  G  D+   +
Sbjct: 265 NSVSYSILIHGLCEVGRLEEAFGLKDQM-GEKGCQPSTRTYTVLIKALCDRGLIDKAFNL 323

Query: 229 WDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR 288
           +D M     + +  TY   I GLC+ G +E A  V R+MV+  IF   +TYNA+I+G+C+
Sbjct: 324 FDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCK 383

Query: 289 AGKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTT 347
            G++   FEL  VM ++ C  NV ++N L+ GL   GK  +A+ + + + +   + D  +
Sbjct: 384 DGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVS 443

Query: 348 HGVLINGLCKNGYLNKAIQILN-----EVEEG------------GEGRLADAASLVNRMD 390
           + VLI+GLC+ G++N A ++L+     ++E               +G+   A++ +  M 
Sbjct: 444 YNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLML 503

Query: 391 KHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFG 450
           + G  L+  T  +L++G  +  K  +A+F+ + + +     T  S N +++ L K  +  
Sbjct: 504 RKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVK 563

Query: 451 EAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILI 510
           E  + + ++ + G  P ++TY+ L++GL +S  I  + ++       G  P+V  Y I+I
Sbjct: 564 EELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIII 623

Query: 511 HGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLR 570
           +GLC  G+VE+A +L S M+     PN VTY  ++ G    G  D+ALE    ++E    
Sbjct: 624 NGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYE 683

Query: 571 PDIISYNITLKGL 583
            +   Y+  L+G 
Sbjct: 684 LNDRIYSSLLQGF 696



 Score =  209 bits (531), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 146/579 (25%), Positives = 270/579 (46%), Gaps = 53/579 (9%)

Query: 92  ALDVFQRMNEIFGCEAGI---------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVI 142
           AL VF  M++   C             LC   + E+A    + + EKG +P   +Y  +I
Sbjct: 249 ALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLI 308

Query: 143 NGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSV 202
             L   G +  A  +FDEM  RG + NV  Y +LIDG  + G    A  +  ++V +  +
Sbjct: 309 KALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKD-RI 367

Query: 203 YPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAER 262
           +P+V+TYN +ING CK GR     E+   M+K   + +  T+   + GLC+ G    A  
Sbjct: 368 FPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVH 427

Query: 263 VYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNV----VSYNILIR 318
           + + M+++G+  D V+YN +IDG CR G +   ++L   M    C ++    +++  +I 
Sbjct: 428 LLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMN---CFDIEPDCLTFTAIIN 484

Query: 319 GLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGR 378
              + GK D A +   L+  K  + D  T   LI+G+CK G    A+ IL  + +     
Sbjct: 485 AFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILT 544

Query: 379 LADAASLVNRMDKHGCKL-----------------NAYTCNSLMNGFIQASKLENAIFLF 421
              + +++  M   GCK+                 +  T  +L++G I++  +  +  + 
Sbjct: 545 TPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRIL 604

Query: 422 KEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQS 481
           + M   GC P V  Y  +INGLC+  R  EA   +  M + G  P+ +TY++++ G   +
Sbjct: 605 ELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNN 664

Query: 482 KKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQ--LYSNMKKR----NCV 535
            K+D AL+     +++G+  +  +Y+ L+ G   + K  D  +    S++  R     C+
Sbjct: 665 GKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQKGIDNSEESTVSDIALRETDPECI 724

Query: 536 PNLVTYNTLMDG------------LFKTGDCDKALEIWNHILEERLRPDIISYNITLKGL 583
             L++    + G            L K G  D++ ++  ++LE  +  +  + +I ++  
Sbjct: 725 NELISVVEQLGGCISGLCIFLVTRLCKEGRTDESNDLVQNVLERGVFLE-KAMDIIMESY 783

Query: 584 CSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
           CS  + +   E +   L  G +P+  ++ ++++ +   G
Sbjct: 784 CSKKKHTKCMELITLVLKSGFVPSFKSFCLVIQGLKKEG 822



 Score =  154 bits (390), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 179/396 (45%), Gaps = 51/396 (12%)

Query: 229 WDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR 288
           + RM+ +        Y + ++ LCK G  E AE    ++++ G  +D+    +++ GFCR
Sbjct: 183 YRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCR 242

Query: 289 AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348
              +++  ++++VM +                                 E  C  +S ++
Sbjct: 243 GLNLRDALKVFDVMSK---------------------------------EVTCAPNSVSY 269

Query: 349 GVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGF 408
            +LI+GLC+                   GRL +A  L ++M + GC+ +  T   L+   
Sbjct: 270 SILIHGLCE------------------VGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKAL 311

Query: 409 IQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM 468
                ++ A  LF EM  +GC P V +Y  LI+GLC+  +  EA    ++M++    P +
Sbjct: 312 CDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSV 371

Query: 469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSN 528
           ITY+ LING C+  ++  A +L     ++   P+V  +N L+ GLC  GK   A+ L   
Sbjct: 372 ITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKR 431

Query: 529 MKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSR 588
           M      P++V+YN L+DGL + G  + A ++ + +    + PD +++   +   C   +
Sbjct: 432 MLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGK 491

Query: 589 MSDAFEFLNDALCRGILPTTITWHILVRAVMNNGAS 624
              A  FL   L +GI    +T   L+  V   G +
Sbjct: 492 ADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKT 527



 Score = 52.4 bits (124), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 99/251 (39%), Gaps = 55/251 (21%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
           LC+  + E+A++ L+++ + G+ P+  +Y  ++ G V +G L  AL     M ERG E N
Sbjct: 626 LCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELN 685

Query: 170 VVCYNILIDGFF--KKG-DYMRAKEIWERLVMETSVYPNVVTYNV--------------- 211
              Y+ L+ GF   +KG D      + +  + ET   P  +   +               
Sbjct: 686 DRIYSSLLQGFVLSQKGIDNSEESTVSDIALRETD--PECINELISVVEQLGGCISGLCI 743

Query: 212 -MINGLCKCGRFDE----------------------------------CLEMWDRMKKNE 236
            ++  LCK GR DE                                  C+E+   + K+ 
Sbjct: 744 FLVTRLCKEGRTDESNDLVQNVLERGVFLEKAMDIIMESYCSKKKHTKCMELITLVLKSG 803

Query: 237 REKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECF 296
                 ++C  I GL K G+ E A  +  E++ S   V+       ++      +  +C 
Sbjct: 804 FVPSFKSFCLVIQGLKKEGDAERARELVMELLTSNGVVEKSGVLTYVECLMEGDETGDCS 863

Query: 297 ELWEVMGRKGC 307
           E+ +++ +  C
Sbjct: 864 EVIDLVDQLHC 874


>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
           OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
          Length = 704

 Score =  221 bits (562), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 139/500 (27%), Positives = 241/500 (48%), Gaps = 22/500 (4%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
           LCR  +  KA   L  +    L PDV+SY TVI G  +  +L  AL + +EM   G   +
Sbjct: 152 LCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWS 211

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
           +V + ILID F K G    A    + +     +  ++V Y  +I G C CG  D    ++
Sbjct: 212 LVTWGILIDAFCKAGKMDEAMGFLKEMKF-MGLEADLVVYTSLIRGFCDCGELDRGKALF 270

Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
           D + +      + TY + I G CK G ++ A  ++  M+E G+  +  TY  +IDG C  
Sbjct: 271 DEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGV 330

Query: 290 GKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348
           GK KE  +L  +M  K    N V+YNI+I  L ++G V +A+ I EL++++    D+ T+
Sbjct: 331 GKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITY 390

Query: 349 GVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRM--DKHGCKLNAYTCNSLMN 406
            +L+ GLC                   +G L +A+ L+  M  D      +  + N+L++
Sbjct: 391 NILLGGLC------------------AKGDLDEASKLLYLMLKDSSYTDPDVISYNALIH 432

Query: 407 GFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKP 466
           G  + ++L  A+ ++  +  K  +   V+ N L+N   K     +A    K++ +     
Sbjct: 433 GLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVR 492

Query: 467 DMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLY 526
           +  TY+ +I+G C++  +++A  L C+       P V  YN L+  LC  G ++ A +L+
Sbjct: 493 NSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLF 552

Query: 527 SNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSC 586
             M++ N  P++V++N ++DG  K GD   A  +   +    L PD+ +Y+  +      
Sbjct: 553 EEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKL 612

Query: 587 SRMSDAFEFLNDALCRGILP 606
             + +A  F +  +  G  P
Sbjct: 613 GYLDEAISFFDKMVDSGFEP 632



 Score =  208 bits (529), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 143/507 (28%), Positives = 249/507 (49%), Gaps = 32/507 (6%)

Query: 78  SVIQAYGKNSMPDKALDVFQRMNEIFGCEA-----GIL----CRKRQFEKAKRFLNSLWE 128
           +VI+ + +    +KAL++   M    GC       GIL    C+  + ++A  FL  +  
Sbjct: 182 TVIRGFCEGKELEKALELANEMKGS-GCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKF 240

Query: 129 KGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMR 188
            GL+ D+  Y ++I G    G+L    A+FDE+ ERG     + YN LI GF K G    
Sbjct: 241 MGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKE 300

Query: 189 AKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFI 248
           A EI+E  ++E  V PNV TY  +I+GLC  G+  E L++ + M + + E ++ TY   I
Sbjct: 301 ASEIFE-FMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIII 359

Query: 249 HGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL 308
           + LCK G V  A  +   M +     D +TYN ++ G C  G + E  +L  +M +    
Sbjct: 360 NKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSY 419

Query: 309 ---NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAI 365
              +V+SYN LI GL +  ++ +A+ I++LL EK    D  T  +L+N   K G +NKA+
Sbjct: 420 TDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAM 479

Query: 366 QILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMS 425
           ++  ++ +    R                  N+ T  ++++GF +   L  A  L  +M 
Sbjct: 480 ELWKQISDSKIVR------------------NSDTYTAMIDGFCKTGMLNVAKGLLCKMR 521

Query: 426 RKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKID 485
                P+V  YN L++ LCK     +A+   +EM      PD+++++++I+G  ++  I 
Sbjct: 522 VSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIK 581

Query: 486 MALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLM 545
            A  L     + G +PD+  Y+ LI+     G +++A+  +  M      P+    ++++
Sbjct: 582 SAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVL 641

Query: 546 DGLFKTGDCDKALEIWNHILEERLRPD 572
                 G+ DK  E+   ++++ +  D
Sbjct: 642 KYCISQGETDKLTELVKKLVDKDIVLD 668



 Score =  195 bits (496), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 134/492 (27%), Positives = 237/492 (48%), Gaps = 22/492 (4%)

Query: 135 VYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWE 194
            ++   ++  LV+S +   A + + +M E     N V  + L++ + +      A  +  
Sbjct: 72  AFAGNNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLA 131

Query: 195 RLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKA 254
            L+++     NV  +N+++ GLC+     + + +   M++N    D F+Y + I G C+ 
Sbjct: 132 -LMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEG 190

Query: 255 GNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-LNVVSY 313
             +E A  +  EM  SG     VT+  +ID FC+AGK+ E     + M   G   ++V Y
Sbjct: 191 KELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVY 250

Query: 314 NILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEE 373
             LIRG  + G++D   ++++ + E+  +  + T+  LI G CK                
Sbjct: 251 TSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCK---------------- 294

Query: 374 GGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTV 433
              G+L +A+ +   M + G + N YT   L++G     K + A+ L   M  K   P  
Sbjct: 295 --LGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNA 352

Query: 434 VSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQ 493
           V+YN +IN LCK     +A   V+ M ++  +PD ITY++L+ GLC    +D A KL   
Sbjct: 353 VTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYL 412

Query: 494 FLQ-KGFT-PDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKT 551
            L+   +T PDV  YN LIHGLC   ++  AL +Y  + ++    + VT N L++   K 
Sbjct: 413 MLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKA 472

Query: 552 GDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITW 611
           GD +KA+E+W  I + ++  +  +Y   + G C    ++ A   L       + P+   +
Sbjct: 473 GDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDY 532

Query: 612 HILVRAVMNNGA 623
           + L+ ++   G+
Sbjct: 533 NCLLSSLCKEGS 544



 Score =  164 bits (414), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 189/378 (50%), Gaps = 22/378 (5%)

Query: 248 IHGLCKAGN--VEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRK 305
           +  LC+  N  ++ A  V+++ V+SG  + A   N ++    R+   +  F  +  M   
Sbjct: 43  LRSLCEDSNPQLKNAVSVFQQAVDSGSSL-AFAGNNLMAKLVRSRNHELAFSFYRKMLET 101

Query: 306 GC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKA 364
              +N VS + L+   ++  K   A  +  L+ ++    +   H +L+ GLC+N    KA
Sbjct: 102 DTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKA 161

Query: 365 IQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEM 424
           + +L E                  M ++    + ++ N+++ GF +  +LE A+ L  EM
Sbjct: 162 VSLLRE------------------MRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEM 203

Query: 425 SRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKI 484
              GCS ++V++  LI+  CK  +  EA  F+KEM   G + D++ Y+ LI G C   ++
Sbjct: 204 KGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGEL 263

Query: 485 DMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTL 544
           D    L  + L++G +P    YN LI G C  G++++A +++  M +R   PN+ TY  L
Sbjct: 264 DRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGL 323

Query: 545 MDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGI 604
           +DGL   G   +AL++ N ++E+   P+ ++YNI +  LC    ++DA E +     R  
Sbjct: 324 IDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRT 383

Query: 605 LPTTITWHILVRAVMNNG 622
            P  IT++IL+  +   G
Sbjct: 384 RPDNITYNILLGGLCAKG 401


>sp|Q9FLJ4|PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400
           OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1
          Length = 654

 Score =  219 bits (558), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 146/513 (28%), Positives = 252/513 (49%), Gaps = 25/513 (4%)

Query: 115 QFEKAKRFLNSLW---EKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVV 171
           +F +   F  +LW   E    PD  +  +++NGLV+          +  M  RG+  +V 
Sbjct: 141 EFLEMGLFEEALWVSREMKCSPDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVH 200

Query: 172 CYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDR 231
            Y +L    FK+G Y + +++ + +     + PNV  Y + I  LC+  + +E  +M++ 
Sbjct: 201 IYFVLFQCCFKQGLYSKKEKLLDEMT-SLGIKPNVYIYTIYILDLCRDNKMEEAEKMFEL 259

Query: 232 MKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGK 291
           MKK+    + +TY + I G CK GNV  A  +Y+E++ + +  + V +  ++DGFC+A +
Sbjct: 260 MKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARE 319

Query: 292 IKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGV 350
           +     L+  M + G   N+  YN LI G  ++G + EA+ +   +   N + D  T+ +
Sbjct: 320 LVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTI 379

Query: 351 LINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQ 410
           LINGLC                   E ++A+A  L  +M       ++ T NSL++G+ +
Sbjct: 380 LINGLCI------------------EDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCK 421

Query: 411 ASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMIT 470
              +E A+ L  EM+  G  P +++++TLI+G C V     A     EM  KG  PD++T
Sbjct: 422 EYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVT 481

Query: 471 YSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYS-NM 529
           Y+ LI+   +   +  AL+L    L+ G  P+   +  L+ G    G++  A+  Y  N 
Sbjct: 482 YTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENN 541

Query: 530 KKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRM 589
           ++R+C  N V +  L++GL + G   +A   ++ +    + PDI SY   LKG     R+
Sbjct: 542 QQRSCW-NHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHLQEKRI 600

Query: 590 SDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
           +D      D +  GILP  +   +L R    NG
Sbjct: 601 TDTMMLQCDMIKTGILPNLLVNQLLARFYQANG 633



 Score =  172 bits (436), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 209/429 (48%), Gaps = 21/429 (4%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
           LCR  + E+A++    + + G+ P++Y+Y  +I+G  K+G++  A  ++ E+    +  N
Sbjct: 244 LCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPN 303

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
           VV +  L+DGF K  + + A+ ++  +V +  V PN+  YN +I+G CK G   E + + 
Sbjct: 304 VVVFGTLVDGFCKARELVTARSLFVHMV-KFGVDPNLYVYNCLIHGHCKSGNMLEAVGLL 362

Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
             M+      D FTY   I+GLC    V  A R++++M    IF  + TYN++I G+C+ 
Sbjct: 363 SEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKE 422

Query: 290 GKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348
             +++  +L   M   G   N+++++ LI G      +  A+ ++  +  K    D  T+
Sbjct: 423 YNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTY 482

Query: 349 GVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGF 408
             LI+   K   + +A+++ +++ E G                     N +T   L++GF
Sbjct: 483 TALIDAHFKEANMKEALRLYSDMLEAG------------------IHPNDHTFACLVDGF 524

Query: 409 IQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM 468
            +  +L  AI  ++E +++      V +  LI GLC+      A  F  +M   G  PD+
Sbjct: 525 WKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPDI 584

Query: 469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSN 528
            +Y  ++ G  Q K+I   + L C  ++ G  P++ +  +L     + G V+ A  L +N
Sbjct: 585 CSYVSMLKGHLQEKRITDTMMLQCDMIKTGILPNLLVNQLLARFYQANGYVKSACFL-TN 643

Query: 529 MKKRNCVPN 537
             +   V N
Sbjct: 644 SSRLKTVSN 652



 Score =  168 bits (426), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/427 (27%), Positives = 195/427 (45%), Gaps = 23/427 (5%)

Query: 173 YNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRM 232
           +++LI  F + G +  A  +W    M+ S  P+      ++NGL +  RFD     +  M
Sbjct: 135 FSLLIMEFLEMGLFEEA--LWVSREMKCS--PDSKACLSILNGLVRRRRFDSVWVDYQLM 190

Query: 233 KKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKI 292
                  D   Y        K G     E++  EM   GI  +   Y   I   CR  K+
Sbjct: 191 ISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKM 250

Query: 293 KECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVL 351
           +E  +++E+M + G L N+ +Y+ +I G  + G V +A  +++ +       +    G L
Sbjct: 251 EEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTL 310

Query: 352 INGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQA 411
           ++G CK                     L  A SL   M K G   N Y  N L++G  ++
Sbjct: 311 VDGFCK------------------ARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKS 352

Query: 412 SKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITY 471
             +  A+ L  EM     SP V +Y  LINGLC  ++  EA    ++M  +   P   TY
Sbjct: 353 GNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATY 412

Query: 472 SLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKK 531
           + LI+G C+   ++ AL LC +    G  P++  ++ LI G C+   ++ A+ LY  M  
Sbjct: 413 NSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTI 472

Query: 532 RNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSD 591
           +  VP++VTY  L+D  FK  +  +AL +++ +LE  + P+  ++   + G     R+S 
Sbjct: 473 KGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSV 532

Query: 592 AFEFLND 598
           A +F  +
Sbjct: 533 AIDFYQE 539



 Score =  152 bits (384), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 190/419 (45%), Gaps = 22/419 (5%)

Query: 205 NVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVY 264
           ++  ++++I    + G F+E L +   MK +    DS    S ++GL +    +     Y
Sbjct: 131 SIGVFSLLIMEFLEMGLFEEALWVSREMKCS---PDSKACLSILNGLVRRRRFDSVWVDY 187

Query: 265 REMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-LNVVSYNILIRGLLEN 323
           + M+  G+  D   Y  +     + G   +  +L + M   G   NV  Y I I  L  +
Sbjct: 188 QLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRD 247

Query: 324 GKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAA 383
            K++EA  ++EL+++     +  T+  +I+G CK G + +A  +  E+           A
Sbjct: 248 NKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEIL---------VA 298

Query: 384 SLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGL 443
            L+          N     +L++GF +A +L  A  LF  M + G  P +  YN LI+G 
Sbjct: 299 ELLP---------NVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGH 349

Query: 444 CKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDV 503
           CK     EA   + EM      PD+ TY++LINGLC   ++  A +L  +   +   P  
Sbjct: 350 CKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSS 409

Query: 504 TMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNH 563
             YN LIHG C    +E AL L S M      PN++T++TL+DG     D   A+ ++  
Sbjct: 410 ATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFE 469

Query: 564 ILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
           +  + + PD+++Y   +      + M +A    +D L  GI P   T+  LV      G
Sbjct: 470 MTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEG 528



 Score =  140 bits (353), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 169/359 (47%), Gaps = 31/359 (8%)

Query: 102 IFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEM 161
           +FG      C+ R+   A+     + + G+ P++Y Y  +I+G  KSG++L A+ +  EM
Sbjct: 306 VFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEM 365

Query: 162 FERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGR 221
               +  +V  Y ILI+G   +     A  +++++  E  ++P+  TYN +I+G CK   
Sbjct: 366 ESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNE-RIFPSSATYNSLIHGYCKEYN 424

Query: 222 FDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNA 281
            ++ L++   M  +  E +  T+ + I G C   +++ A  +Y EM   GI  D VTY A
Sbjct: 425 MEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTA 484

Query: 282 MIDGFCRAGKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKN 340
           +ID   +   +KE   L+  M   G   N  ++  L+ G  + G++  AI  ++   ++ 
Sbjct: 485 LIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQR 544

Query: 341 CNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYT 400
              +      LI GLC+NGY+ +A +  +                    D   C +    
Sbjct: 545 SCWNHVGFTCLIEGLCQNGYILRASRFFS--------------------DMRSCGITPDI 584

Query: 401 CN--SLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVK 457
           C+  S++ G +Q  ++ + + L  +M + G  P     N L+N L  + RF +A  +VK
Sbjct: 585 CSYVSMLKGHLQEKRITDTMMLQCDMIKTGILP-----NLLVNQL--LARFYQANGYVK 636


>sp|Q9LER0|PP381_ARATH Pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial OS=Arabidopsis thaliana GN=At5g14770 PE=2
           SV=2
          Length = 940

 Score =  218 bits (555), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 153/554 (27%), Positives = 263/554 (47%), Gaps = 48/554 (8%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFE------ 163
           LC     ++A +FL+ + + G+ PD  SY T+I+G  K G+ + A A+ DE+ E      
Sbjct: 173 LCEHGLADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKALVDEISELNLITH 232

Query: 164 ----------------------RGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETS 201
                                  G + +VV ++ +I+   K G  +    +  R + E S
Sbjct: 233 TILLSSYYNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKGGKVLEGG-LLLREMEEMS 291

Query: 202 VYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAE 261
           VYPN VTY  +++ L K   +   L ++ +M       D   Y   + GL KAG++  AE
Sbjct: 292 VYPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAE 351

Query: 262 RVYREMVESGIFVDAVTYNAMIDGFCRAGKIKEC-FELWEVMGRKGCLNVVSYNILIRGL 320
           + ++ ++E     + VTY A++DG C+AG +    F + +++ +    NVV+Y+ +I G 
Sbjct: 352 KTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGY 411

Query: 321 LENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNE-----VEEGG 375
           ++ G ++EA+S+   + ++N   +  T+G +I+GL K G    AI++  E     VEE  
Sbjct: 412 VKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENN 471

Query: 376 E------------GRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKE 423
                        GR+ +   LV  M   G  L+     SL++ F +    E A+   +E
Sbjct: 472 YILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEAALAWAEE 531

Query: 424 MSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKK 483
           M  +G    VVSYN LI+G+ K  + G  +++ K M EKG +PD+ T+++++N   +   
Sbjct: 532 MQERGMPWDVVSYNVLISGMLKFGKVGADWAY-KGMREKGIEPDIATFNIMMNSQRKQGD 590

Query: 484 IDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNT 543
            +  LKL  +    G  P +   NI++  LC  GK+E+A+ + + M      PNL TY  
Sbjct: 591 SEGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLTTYRI 650

Query: 544 LMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRG 603
            +D   K    D   +    +L   ++     YN  +  LC       A   + D   RG
Sbjct: 651 FLDTSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDMEARG 710

Query: 604 ILPTTITWHILVRA 617
            +P T+T++ L+  
Sbjct: 711 FIPDTVTFNSLMHG 724



 Score =  207 bits (527), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 142/515 (27%), Positives = 247/515 (47%), Gaps = 23/515 (4%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
           L +     +A++    L E    P+V +Y  +++GL K+GDL  A  +  +M E+ V  N
Sbjct: 341 LFKAGDLREAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPN 400

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
           VV Y+ +I+G+ KKG    A  +  ++  + +V PN  TY  +I+GL K G+ +  +E+ 
Sbjct: 401 VVTYSSMINGYVKKGMLEEAVSLLRKM-EDQNVVPNGFTYGTVIDGLFKAGKEEMAIELS 459

Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
             M+    E++++   + ++ L + G ++  + + ++MV  G+ +D + Y ++ID F + 
Sbjct: 460 KEMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKG 519

Query: 290 GKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348
           G  +      E M  +G   +VVSYN+LI G+L+ GKV  A   ++ +REK    D  T 
Sbjct: 520 GDEEAALAWAEEMQERGMPWDVVSYNVLISGMLKFGKVG-ADWAYKGMREKGIEPDIATF 578

Query: 349 GVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGF 408
            +++N   K G                EG L     L ++M   G K +  +CN ++   
Sbjct: 579 NIMMNSQRKQG--------------DSEGIL----KLWDKMKSCGIKPSLMSCNIVVGML 620

Query: 409 IQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM 468
            +  K+E AI +  +M      P + +Y   ++   K +R    +   + +L  G K   
Sbjct: 621 CENGKMEEAIHILNQMMLMEIHPNLTTYRIFLDTSSKHKRADAIFKTHETLLSYGIKLSR 680

Query: 469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSN 528
             Y+ LI  LC+      A  +      +GF PD   +N L+HG      V  AL  YS 
Sbjct: 681 QVYNTLIATLCKLGMTKKAAMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSV 740

Query: 529 MKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEER-LRPDIISYNITLKGLCSCS 587
           M +    PN+ TYNT++ GL   G   K ++ W   ++ R +RPD  +YN  + G     
Sbjct: 741 MMEAGISPNVATYNTIIRGLSDAG-LIKEVDKWLSEMKSRGMRPDDFTYNALISGQAKIG 799

Query: 588 RMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
            M  +     + +  G++P T T+++L+    N G
Sbjct: 800 NMKGSMTIYCEMIADGLVPKTSTYNVLISEFANVG 834



 Score =  181 bits (459), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 128/472 (27%), Positives = 218/472 (46%), Gaps = 27/472 (5%)

Query: 151 LLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYN 210
           L GA      M   GV  +   +N LI  F   G       +    ++   V P+V   N
Sbjct: 76  LYGAARTLSAMCTFGVVPDSRLWNSLIHQFNVNGLVHDQVSLIYSKMIACGVSPDVFALN 135

Query: 211 VMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVES 270
           V+I+  CK GR    + +   ++      D+ TY + I GLC+ G  + A +   EMV+ 
Sbjct: 136 VLIHSFCKVGRLSFAISL---LRNRVISIDTVTYNTVISGLCEHGLADEAYQFLSEMVKM 192

Query: 271 GIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAI 330
           GI  D V+YN +IDGFC+ G       L + +     LN++++ IL+        ++EA 
Sbjct: 193 GILPDTVSYNTLIDGFCKVGNFVRAKALVDEISE---LNLITHTILLSSYYNLHAIEEA- 248

Query: 331 SIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMD 390
             +  +     + D  T   +IN LCK G          +V EGG         L+  M+
Sbjct: 249 --YRDMVMSGFDPDVVTFSSIINRLCKGG----------KVLEGG--------LLLREME 288

Query: 391 KHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFG 450
           +     N  T  +L++   +A+   +A+ L+ +M  +G    +V Y  L++GL K     
Sbjct: 289 EMSVYPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLR 348

Query: 451 EAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILI 510
           EA    K +LE    P+++TY+ L++GLC++  +  A  +  Q L+K   P+V  Y+ +I
Sbjct: 349 EAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMI 408

Query: 511 HGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLR 570
           +G    G +E+A+ L   M+ +N VPN  TY T++DGLFK G  + A+E+   +    + 
Sbjct: 409 NGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVE 468

Query: 571 PDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
            +    +  +  L    R+ +    + D + +G+    I +  L+      G
Sbjct: 469 ENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGG 520



 Score =  179 bits (454), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 152/587 (25%), Positives = 251/587 (42%), Gaps = 67/587 (11%)

Query: 17  NPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVA 76
           N  T   L DS  +   Y H+  L+  ++ R I   LVV+   +  L +       E   
Sbjct: 295 NHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTF 354

Query: 77  LSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVY 136
             +++    N +P+            +      LC+      A+  +  + EK + P+V 
Sbjct: 355 KMLLE---DNQVPNVV---------TYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVV 402

Query: 137 SYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERL 196
           +Y ++ING VK G L  A+++  +M ++ V  N   Y  +IDG FK G    A E+ + +
Sbjct: 403 TYSSMINGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEM 462

Query: 197 VMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFI-------- 248
            +   V  N    + ++N L + GR  E   +   M       D   Y S I        
Sbjct: 463 RL-IGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGD 521

Query: 249 ---------------------------HGLCKAGNVEGAERVYREMVESGIFVDAVTYNA 281
                                       G+ K G V GA+  Y+ M E GI  D  T+N 
Sbjct: 522 EEAALAWAEEMQERGMPWDVVSYNVLISGMLKFGKV-GADWAYKGMREKGIEPDIATFNI 580

Query: 282 MIDGFCRAGKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKN 340
           M++   + G  +   +LW+ M   G   +++S NI++  L ENGK++EAI I   +    
Sbjct: 581 MMNSQRKQGDSEGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLME 640

Query: 341 CNADSTTHGVLINGLCKN-----------GYLNKAIQILNEVEEG------GEGRLADAA 383
            + + TT+ + ++   K+             L+  I++  +V           G    AA
Sbjct: 641 IHPNLTTYRIFLDTSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAA 700

Query: 384 SLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGL 443
            ++  M+  G   +  T NSLM+G+   S +  A+  +  M   G SP V +YNT+I GL
Sbjct: 701 MVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGL 760

Query: 444 CKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDV 503
                  E   ++ EM  +G +PD  TY+ LI+G  +   +  ++ + C+ +  G  P  
Sbjct: 761 SDAGLIKEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKT 820

Query: 504 TMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK 550
           + YN+LI    + GK+  A +L   M KR   PN  TY T++ GL K
Sbjct: 821 STYNVLISEFANVGKMLQARELLKEMGKRGVSPNTSTYCTMISGLCK 867



 Score =  133 bits (334), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 179/390 (45%), Gaps = 69/390 (17%)

Query: 126 LWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGD 185
           + E+G+  DV SY  +I+G++K G + GA   +  M E+G+E ++  +NI+++   K+GD
Sbjct: 532 MQERGMPWDVVSYNVLISGMLKFGKV-GADWAYKGMREKGIEPDIATFNIMMNSQRKQGD 590

Query: 186 YMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRM------------- 232
                ++W+++     + P++++ N+++  LC+ G+ +E + + ++M             
Sbjct: 591 SEGILKLWDKM-KSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLTTYR 649

Query: 233 ------KKNEREKDSF----------------TYCSFIHGLCKAGNVEGAERVYREMVES 270
                  K++R    F                 Y + I  LCK G  + A  V  +M   
Sbjct: 650 IFLDTSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDMEAR 709

Query: 271 GIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKG-CLNVVSYNILIRGLLENGKVDEA 329
           G   D VT+N+++ G+     +++    + VM   G   NV +YN +IRGL + G + E 
Sbjct: 710 GFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKEV 769

Query: 330 ISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRM 389
                 ++ +    D  T+  LI+G  K G +  ++ I  E+       +AD        
Sbjct: 770 DKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEM-------IAD-------- 814

Query: 390 DKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKV--- 446
              G      T N L++ F    K+  A  L KEM ++G SP   +Y T+I+GLCK+   
Sbjct: 815 ---GLVPKTSTYNVLISEFANVGKMLQARELLKEMGKRGVSPNTSTYCTMISGLCKLCTH 871

Query: 447 ---------ERFGEAYSFVKEML-EKGWKP 466
                        EA   +KEM+ EKG+ P
Sbjct: 872 PDVEWNKKAMYLAEAKGLLKEMVEEKGYIP 901


>sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2
           SV=1
          Length = 851

 Score =  218 bits (554), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 169/607 (27%), Positives = 278/607 (45%), Gaps = 67/607 (11%)

Query: 79  VIQAYGKNSMPDKALDVFQRMNE--------IFGCEAGILCRKRQFEKAKRFLNSLWEKG 130
           +++A  +   P +AL+V  R  E        ++       C+      A   L  + EK 
Sbjct: 239 LMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMANSLLREMKEKK 298

Query: 131 L-KPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA 189
           L  P   +Y +VI   VK G++  A+ + DEM   G+  NVV    LI G  K  D + A
Sbjct: 299 LCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSA 358

Query: 190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIH 249
             +++++  E    PN VT++V+I    K G  ++ LE + +M+        F   + I 
Sbjct: 359 LVLFDKMEKEGP-SPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQ 417

Query: 250 GLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-L 308
           G  K    E A +++ E  E+G+  +    N ++   C+ GK  E  EL   M  +G   
Sbjct: 418 GWLKGQKHEEALKLFDESFETGL-ANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGP 476

Query: 309 NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQIL 368
           NVVSYN ++ G      +D A  ++  + EK    ++ T+ +LI+G  +N     A++++
Sbjct: 477 NVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVV 536

Query: 369 NE-----VEEGGE------------GRLADAASLVNRM--DKHGCKLNAYTCNSLMNGFI 409
           N      +E  G             G+ + A  L+  M  +K  C ++  + NS+++GF 
Sbjct: 537 NHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLC-VSCMSYNSIIDGFF 595

Query: 410 QASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMI 469
           +  ++++A+  ++EM   G SP V++Y +L+NGLCK  R  +A     EM  KG K D+ 
Sbjct: 596 KEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIP 655

Query: 470 TYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNM 529
            Y  LI+G C+   ++ A  L  + L++G  P   +YN LI G  + G +  AL LY  M
Sbjct: 656 AYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKM 715

Query: 530 KKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSR- 588
            K     +L TY TL+DGL K G+   A E++  +    L PD I Y + + GL    + 
Sbjct: 716 LKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQF 775

Query: 589 ----------------------------------MSDAFEFLNDALCRGILPTTITWHIL 614
                                             + +AF   ++ L +GILP   T+ IL
Sbjct: 776 VKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDIL 835

Query: 615 VRAVMNN 621
           V   + N
Sbjct: 836 VSGQVGN 842



 Score =  176 bits (447), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 142/607 (23%), Positives = 270/607 (44%), Gaps = 65/607 (10%)

Query: 79  VIQAYGKNSMPDKALDVFQRMNEI--------FGCEAGILCRKRQFEKAKRFLNSLWEKG 130
           ++ AY K+   D A+D+  +M E+               L ++    +AK   + +   G
Sbjct: 169 LLNAYSKDRQTDHAVDIVNQMLELDVIPFFPYVNRTLSALVQRNSLTEAKELYSRMVAIG 228

Query: 131 LKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAK 190
           +  D  +   ++   ++      AL V     ERG E + + Y++ +    K  D   A 
Sbjct: 229 VDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMAN 288

Query: 191 EIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHG 250
            +   +  +    P+  TY  +I    K G  D+ + + D M  +    +     S I G
Sbjct: 289 SLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITG 348

Query: 251 LCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-N 309
            CK  ++  A  ++ +M + G   ++VT++ +I+ F + G++++  E ++ M   G   +
Sbjct: 349 HCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPS 408

Query: 310 VVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILN 369
           V   + +I+G L+  K +EA+ +++   E    A+      +++ LCK G  ++A ++L+
Sbjct: 409 VFHVHTIIQGWLKGQKHEEALKLFDESFETGL-ANVFVCNTILSWLCKQGKTDEATELLS 467

Query: 370 EVEEGGEG----------------RLADAASLV--NRMDKHGCKLNAYTCNSLMNGFIQA 411
           ++E  G G                +  D A +V  N ++K G K N YT + L++G  + 
Sbjct: 468 KMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEK-GLKPNNYTYSILIDGCFRN 526

Query: 412 SKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEK--------- 462
              +NA+ +   M+        V Y T+INGLCKV +  +A   +  M+E+         
Sbjct: 527 HDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMS 586

Query: 463 ---------------------------GWKPDMITYSLLINGLCQSKKIDMALKLCCQFL 495
                                      G  P++ITY+ L+NGLC++ ++D AL++  +  
Sbjct: 587 YNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMK 646

Query: 496 QKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCD 555
            KG   D+  Y  LI G C    +E A  L+S + +    P+   YN+L+ G    G+  
Sbjct: 647 NKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMV 706

Query: 556 KALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILV 615
            AL+++  +L++ LR D+ +Y   + GL     +  A E   +    G++P  I + ++V
Sbjct: 707 AALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIV 766

Query: 616 RAVMNNG 622
             +   G
Sbjct: 767 NGLSKKG 773



 Score =  175 bits (444), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 130/505 (25%), Positives = 240/505 (47%), Gaps = 24/505 (4%)

Query: 121 RFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGF 180
           + ++S    G + +  ++  ++N   K      A+ + ++M E  V       N  +   
Sbjct: 149 KLVDSAKSFGFEVNSRAFNYLLNAYSKDRQTDHAVDIVNQMLELDVIPFFPYVNRTLSAL 208

Query: 181 FKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKD 240
            ++     AKE++ R+V    V  + VT  +++    +  +  E LE+  R  +   E D
Sbjct: 209 VQRNSLTEAKELYSRMVA-IGVDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPD 267

Query: 241 SFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAV-TYNAMIDGFCRAGKIKECFELW 299
           S  Y   +   CK  ++  A  + REM E  + V +  TY ++I    + G + +   L 
Sbjct: 268 SLLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLK 327

Query: 300 EVMGRKG-CLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKN 358
           + M   G  +NVV+   LI G  +N  +  A+ +++ + ++  + +S T  VLI    KN
Sbjct: 328 DEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKN 387

Query: 359 GYLNKAIQILNEVEEGG------------EGRLA-----DAASLVNRMDKHGCKLNAYTC 401
           G + KA++   ++E  G            +G L      +A  L +   + G   N + C
Sbjct: 388 GEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLA-NVFVC 446

Query: 402 NSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLE 461
           N++++   +  K + A  L  +M  +G  P VVSYN ++ G C+ +    A      +LE
Sbjct: 447 NTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILE 506

Query: 462 KGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVED 521
           KG KP+  TYS+LI+G  ++     AL++           +  +Y  +I+GLC  G+   
Sbjct: 507 KGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSK 566

Query: 522 ALQLYSNM--KKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNIT 579
           A +L +NM  +KR CV + ++YN+++DG FK G+ D A+  +  +    + P++I+Y   
Sbjct: 567 ARELLANMIEEKRLCV-SCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSL 625

Query: 580 LKGLCSCSRMSDAFEFLNDALCRGI 604
           + GLC  +RM  A E  ++   +G+
Sbjct: 626 MNGLCKNNRMDQALEMRDEMKNKGV 650



 Score =  125 bits (314), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 180/407 (44%), Gaps = 20/407 (4%)

Query: 238 EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFE 297
           E +S  +   ++   K    + A  +  +M+E  +       N  +    +   + E  E
Sbjct: 160 EVNSRAFNYLLNAYSKDRQTDHAVDIVNQMLELDVIPFFPYVNRTLSALVQRNSLTEAKE 219

Query: 298 LWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLC 356
           L+  M   G   + V+  +L+R  L   K  EA+ +     E+    DS  + + +   C
Sbjct: 220 LYSRMVAIGVDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLAVQACC 279

Query: 357 KNGYLNKAIQILNEVEEGG------------------EGRLADAASLVNRMDKHGCKLNA 398
           K   L  A  +L E++E                    +G + DA  L + M   G  +N 
Sbjct: 280 KTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNV 339

Query: 399 YTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKE 458
               SL+ G  + + L +A+ LF +M ++G SP  V+++ LI    K     +A  F K+
Sbjct: 340 VAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKK 399

Query: 459 MLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGK 518
           M   G  P +     +I G  + +K + ALKL  +  + G   +V + N ++  LC  GK
Sbjct: 400 MEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLA-NVFVCNTILSWLCKQGK 458

Query: 519 VEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNI 578
            ++A +L S M+ R   PN+V+YN +M G  +  + D A  ++++ILE+ L+P+  +Y+I
Sbjct: 459 TDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSI 518

Query: 579 TLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNGAST 625
            + G        +A E +N      I    + +  ++  +   G ++
Sbjct: 519 LIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTS 565



 Score = 82.8 bits (203), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 110/241 (45%), Gaps = 1/241 (0%)

Query: 383 ASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLING 442
           + LV+     G ++N+   N L+N + +  + ++A+ +  +M      P     N  ++ 
Sbjct: 148 SKLVDSAKSFGFEVNSRAFNYLLNAYSKDRQTDHAVDIVNQMLELDVIPFFPYVNRTLSA 207

Query: 443 LCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPD 502
           L +     EA      M+  G   D +T  LL+    + +K   AL++  + +++G  PD
Sbjct: 208 LVQRNSLTEAKELYSRMVAIGVDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPD 267

Query: 503 VTMYNILIHGLCSAGKVEDALQLYSNMK-KRNCVPNLVTYNTLMDGLFKTGDCDKALEIW 561
             +Y++ +   C    +  A  L   MK K+ CVP+  TY +++    K G+ D A+ + 
Sbjct: 268 SLLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLK 327

Query: 562 NHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNN 621
           + +L + +  ++++    + G C  + +  A    +     G  P ++T+ +L+     N
Sbjct: 328 DEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKN 387

Query: 622 G 622
           G
Sbjct: 388 G 388


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.139    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 231,911,246
Number of Sequences: 539616
Number of extensions: 9794955
Number of successful extensions: 39934
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 23542
Number of HSP's gapped (non-prelim): 3540
length of query: 625
length of database: 191,569,459
effective HSP length: 124
effective length of query: 501
effective length of database: 124,657,075
effective search space: 62453194575
effective search space used: 62453194575
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)