Query 038112
Match_columns 625
No_of_seqs 747 out of 3499
Neff 12.2
Searched_HMMs 46136
Date Fri Mar 29 07:43:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.1E-71 2.3E-76 584.8 63.2 598 4-623 53-672 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.5E-68 3.2E-73 561.2 62.5 569 3-609 153-727 (857)
3 PLN03218 maturation of RBCL 1; 100.0 1.7E-65 3.6E-70 525.6 67.7 523 35-609 367-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 1.7E-63 3.6E-68 510.8 62.3 488 110-620 380-894 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 1.1E-59 2.4E-64 482.1 52.1 460 112-606 99-561 (697)
6 PLN03081 pentatricopeptide (PP 100.0 6.8E-57 1.5E-61 461.6 53.4 509 4-574 89-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-39 2.7E-44 353.3 75.9 597 8-624 233-887 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.9E-39 1.3E-43 348.0 76.4 598 8-623 165-819 (899)
9 PRK11447 cellulose synthase su 100.0 3.6E-32 7.9E-37 292.9 70.0 575 9-602 35-700 (1157)
10 PRK11447 cellulose synthase su 100.0 4.2E-31 9.2E-36 284.7 67.5 567 6-605 66-744 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 9.4E-27 2E-31 239.0 64.7 566 10-608 52-710 (987)
12 KOG2002 TPR-containing nuclear 100.0 1.3E-27 2.8E-32 228.7 51.4 555 17-601 145-744 (1018)
13 PRK09782 bacteriophage N4 rece 100.0 1.4E-24 3E-29 223.1 62.2 556 6-609 82-745 (987)
14 KOG4626 O-linked N-acetylgluco 100.0 2.8E-26 6.1E-31 208.6 39.8 437 112-584 60-501 (966)
15 KOG2002 TPR-containing nuclear 100.0 1.1E-23 2.4E-28 202.0 54.0 584 18-623 110-731 (1018)
16 KOG4626 O-linked N-acetylgluco 100.0 2.4E-25 5.2E-30 202.6 38.0 465 14-549 27-501 (966)
17 KOG2076 RNA polymerase III tra 99.9 7.8E-21 1.7E-25 181.5 53.1 588 9-601 146-848 (895)
18 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-21 2.8E-26 198.6 47.8 432 7-462 132-571 (615)
19 KOG0495 HAT repeat protein [RN 99.9 2.7E-19 5.8E-24 164.6 55.1 573 16-622 265-865 (913)
20 TIGR00990 3a0801s09 mitochondr 99.9 7E-21 1.5E-25 193.2 49.7 91 139-233 131-221 (615)
21 PRK15174 Vi polysaccharide exp 99.9 9.2E-22 2E-26 198.4 41.2 375 10-392 13-403 (656)
22 PRK15174 Vi polysaccharide exp 99.9 3.8E-21 8.3E-26 194.0 45.0 327 7-342 47-384 (656)
23 PRK11788 tetratricopeptide rep 99.9 1.9E-22 4.1E-27 194.9 34.4 303 283-609 42-354 (389)
24 PRK10049 pgaA outer membrane p 99.9 8.8E-20 1.9E-24 188.4 49.7 419 168-618 13-470 (765)
25 PRK10049 pgaA outer membrane p 99.9 9.4E-20 2E-24 188.2 47.5 420 134-583 14-470 (765)
26 PRK11788 tetratricopeptide rep 99.9 2.4E-21 5.2E-26 187.2 32.5 295 45-346 42-354 (389)
27 PRK14574 hmsH outer membrane p 99.9 2E-18 4.4E-23 174.3 52.9 445 144-610 43-519 (822)
28 PRK14574 hmsH outer membrane p 99.9 5.8E-18 1.3E-22 171.1 55.1 441 111-581 45-525 (822)
29 KOG2076 RNA polymerase III tra 99.9 1.8E-17 3.8E-22 159.0 51.3 558 38-612 139-777 (895)
30 KOG0495 HAT repeat protein [RN 99.9 2.3E-16 4.9E-21 145.7 54.9 563 10-601 293-879 (913)
31 KOG1915 Cell cycle control pro 99.9 5.4E-16 1.2E-20 137.8 45.7 456 113-601 86-584 (677)
32 KOG2003 TPR repeat-containing 99.9 2E-17 4.3E-22 146.0 36.3 277 249-553 427-709 (840)
33 KOG2003 TPR repeat-containing 99.9 1.9E-17 4.2E-22 146.1 35.2 455 136-622 202-708 (840)
34 KOG1915 Cell cycle control pro 99.8 1.2E-14 2.6E-19 129.3 49.3 476 60-566 61-584 (677)
35 KOG4422 Uncharacterized conser 99.8 4E-14 8.8E-19 124.5 42.6 323 36-372 114-460 (625)
36 KOG4422 Uncharacterized conser 99.8 2.1E-13 4.6E-18 120.0 41.9 436 135-604 116-592 (625)
37 KOG3785 Uncharacterized conser 99.8 1.2E-13 2.5E-18 118.6 39.3 439 110-577 32-498 (557)
38 KOG1155 Anaphase-promoting com 99.8 2.1E-13 4.5E-18 121.4 41.7 384 165-621 159-553 (559)
39 KOG1173 Anaphase-promoting com 99.8 8.5E-14 1.8E-18 127.1 38.0 485 35-580 13-529 (611)
40 KOG2047 mRNA splicing factor [ 99.8 2.6E-11 5.6E-16 112.7 54.3 584 14-623 37-709 (835)
41 TIGR00540 hemY_coli hemY prote 99.8 4.1E-15 8.9E-20 142.6 31.6 287 48-339 94-399 (409)
42 KOG1126 DNA-binding cell divis 99.7 4.9E-16 1.1E-20 144.5 23.3 283 51-340 332-621 (638)
43 KOG0547 Translocase of outer m 99.7 1E-14 2.2E-19 130.4 30.0 419 9-461 122-565 (606)
44 KOG1155 Anaphase-promoting com 99.7 2.2E-13 4.8E-18 121.2 38.0 365 70-460 161-534 (559)
45 KOG2047 mRNA splicing factor [ 99.7 1.3E-11 2.8E-16 114.6 49.9 523 38-590 102-711 (835)
46 PRK10747 putative protoheme IX 99.7 6.1E-14 1.3E-18 133.7 36.2 286 289-601 97-389 (398)
47 KOG3785 Uncharacterized conser 99.7 2.3E-13 5E-18 116.8 34.6 444 142-613 29-499 (557)
48 KOG0547 Translocase of outer m 99.7 4.9E-14 1.1E-18 126.1 31.2 378 208-601 117-565 (606)
49 KOG1173 Anaphase-promoting com 99.7 8.3E-13 1.8E-17 120.7 39.6 455 6-496 20-517 (611)
50 PF13429 TPR_15: Tetratricopep 99.7 3E-17 6.5E-22 149.6 11.4 262 43-337 13-275 (280)
51 TIGR00540 hemY_coli hemY prote 99.7 7.5E-14 1.6E-18 134.0 34.9 292 288-600 96-397 (409)
52 PRK10747 putative protoheme IX 99.7 3.9E-14 8.4E-19 135.1 31.5 279 50-339 96-390 (398)
53 PF13429 TPR_15: Tetratricopep 99.7 6.5E-17 1.4E-21 147.4 11.2 262 7-303 13-275 (280)
54 KOG1156 N-terminal acetyltrans 99.7 7.7E-12 1.7E-16 116.4 42.3 449 85-564 19-508 (700)
55 KOG1126 DNA-binding cell divis 99.7 3.4E-14 7.3E-19 132.5 25.6 285 115-427 334-620 (638)
56 COG3071 HemY Uncharacterized e 99.7 1.1E-12 2.5E-17 114.9 33.1 286 289-601 97-389 (400)
57 COG2956 Predicted N-acetylgluc 99.7 3.8E-13 8.1E-18 114.1 28.6 220 148-369 48-273 (389)
58 COG3071 HemY Uncharacterized e 99.7 3.3E-12 7.2E-17 112.1 33.8 299 218-571 96-394 (400)
59 KOG4162 Predicted calmodulin-b 99.6 2E-10 4.3E-15 109.5 46.6 436 129-601 317-782 (799)
60 KOG1156 N-terminal acetyltrans 99.6 8.1E-11 1.7E-15 109.8 43.1 459 110-600 17-509 (700)
61 COG2956 Predicted N-acetylgluc 99.6 2.2E-12 4.8E-17 109.5 30.1 291 288-602 47-347 (389)
62 KOG4162 Predicted calmodulin-b 99.6 1.5E-10 3.2E-15 110.3 42.3 422 165-624 318-770 (799)
63 PRK12370 invasion protein regu 99.6 3.6E-13 7.8E-18 134.3 24.7 251 16-305 275-535 (553)
64 PF12569 NARP1: NMDA receptor- 99.6 5.1E-11 1.1E-15 114.4 35.8 288 9-305 11-334 (517)
65 KOG3617 WD40 and TPR repeat-co 99.6 2.2E-10 4.8E-15 109.7 38.9 526 14-603 740-1360(1416)
66 KOG2376 Signal recognition par 99.6 7.4E-10 1.6E-14 102.4 40.0 456 112-599 24-517 (652)
67 KOG1129 TPR repeat-containing 99.6 1.5E-12 3.2E-17 110.6 20.8 224 110-339 233-458 (478)
68 KOG1174 Anaphase-promoting com 99.6 3.4E-09 7.4E-14 93.6 41.8 293 254-574 209-505 (564)
69 KOG1127 TPR repeat-containing 99.5 7.2E-10 1.6E-14 108.6 40.5 555 15-601 471-1103(1238)
70 KOG2376 Signal recognition par 99.5 2.3E-09 5.1E-14 99.2 41.6 441 142-621 19-505 (652)
71 KOG0624 dsRNA-activated protei 99.5 3.2E-11 6.9E-16 103.4 27.1 313 7-340 43-371 (504)
72 KOG1129 TPR repeat-containing 99.5 4.2E-12 9E-17 108.0 20.5 256 110-372 189-456 (478)
73 PF12569 NARP1: NMDA receptor- 99.5 2E-09 4.3E-14 103.7 41.2 297 40-372 6-332 (517)
74 PRK12370 invasion protein regu 99.5 1.2E-11 2.6E-16 123.5 27.1 246 114-367 275-529 (553)
75 KOG0548 Molecular co-chaperone 99.5 4.5E-10 9.7E-15 102.8 32.3 99 9-110 9-107 (539)
76 KOG1174 Anaphase-promoting com 99.5 1.3E-08 2.9E-13 90.0 39.5 306 166-497 190-500 (564)
77 KOG1127 TPR repeat-containing 99.5 2.3E-09 5E-14 105.2 38.2 480 113-600 471-994 (1238)
78 KOG4318 Bicoid mRNA stability 99.5 5.6E-10 1.2E-14 108.0 32.8 550 30-617 17-639 (1088)
79 KOG4340 Uncharacterized conser 99.5 1E-10 2.3E-15 98.3 24.4 305 41-369 13-334 (459)
80 COG3063 PilF Tfp pilus assembl 99.5 3E-11 6.4E-16 98.0 20.4 190 42-235 39-236 (250)
81 TIGR02521 type_IV_pilW type IV 99.5 1.1E-10 2.4E-15 104.4 26.4 202 396-601 29-231 (234)
82 TIGR02521 type_IV_pilW type IV 99.4 7.3E-11 1.6E-15 105.6 25.1 199 135-337 31-230 (234)
83 KOG4340 Uncharacterized conser 99.4 3.9E-10 8.5E-15 95.0 26.3 319 8-336 16-372 (459)
84 KOG0985 Vesicle coat protein c 99.4 2.7E-07 5.9E-12 91.1 49.1 509 76-622 609-1263(1666)
85 KOG4318 Bicoid mRNA stability 99.4 4.9E-08 1.1E-12 95.0 42.6 230 3-255 26-285 (1088)
86 KOG0548 Molecular co-chaperone 99.4 7E-09 1.5E-13 95.2 35.1 439 110-585 12-471 (539)
87 KOG0624 dsRNA-activated protei 99.4 2.9E-09 6.2E-14 91.7 29.9 369 33-434 33-427 (504)
88 COG3063 PilF Tfp pilus assembl 99.4 4.2E-10 9.1E-15 91.5 23.3 196 110-309 45-240 (250)
89 KOG1840 Kinesin light chain [C 99.4 4.3E-10 9.4E-15 106.7 26.8 174 277-461 200-395 (508)
90 KOG1125 TPR repeat-containing 99.4 1.9E-10 4.1E-15 106.1 22.9 266 3-297 286-563 (579)
91 PRK11189 lipoprotein NlpI; Pro 99.4 6.7E-10 1.5E-14 101.4 26.2 151 16-197 40-192 (296)
92 KOG1840 Kinesin light chain [C 99.4 1.5E-09 3.2E-14 103.1 28.4 252 309-600 198-477 (508)
93 cd05804 StaR_like StaR_like; a 99.4 5.7E-09 1.2E-13 99.6 33.2 197 35-233 3-213 (355)
94 KOG3616 Selective LIM binding 99.3 2.7E-07 5.8E-12 88.2 40.8 401 141-599 738-1181(1636)
95 PRK11189 lipoprotein NlpI; Pro 99.3 1.7E-09 3.6E-14 98.8 25.9 220 112-341 38-267 (296)
96 KOG3616 Selective LIM binding 99.3 1.9E-07 4.1E-12 89.1 38.3 438 13-529 455-908 (1636)
97 cd05804 StaR_like StaR_like; a 99.3 2E-08 4.3E-13 96.0 33.1 297 71-372 4-334 (355)
98 KOG3617 WD40 and TPR repeat-co 99.2 1E-06 2.2E-11 85.4 39.9 413 38-529 726-1171(1416)
99 KOG0985 Vesicle coat protein c 99.2 3.6E-06 7.8E-11 83.6 46.5 467 6-561 842-1335(1666)
100 PRK04841 transcriptional regul 99.2 4.8E-06 1E-10 90.5 50.9 376 175-567 346-760 (903)
101 KOG2053 Mitochondrial inherita 99.2 4.9E-06 1.1E-10 81.9 41.9 483 50-596 21-564 (932)
102 PF13041 PPR_2: PPR repeat fam 99.2 9.1E-11 2E-15 73.9 6.6 50 571-620 1-50 (50)
103 KOG1125 TPR repeat-containing 99.2 5.1E-09 1.1E-13 97.0 20.3 224 110-338 295-526 (579)
104 KOG1914 mRNA cleavage and poly 99.1 5.5E-06 1.2E-10 76.7 39.2 133 398-532 366-501 (656)
105 KOG1914 mRNA cleavage and poly 99.1 6.7E-06 1.5E-10 76.1 40.1 151 449-601 347-500 (656)
106 PF04733 Coatomer_E: Coatomer 99.1 7.3E-09 1.6E-13 92.9 17.9 244 112-370 13-261 (290)
107 PRK04841 transcriptional regul 99.1 3.3E-07 7.2E-12 99.4 34.3 363 7-372 346-758 (903)
108 PF04733 Coatomer_E: Coatomer 99.1 7.3E-09 1.6E-13 92.9 16.9 149 407-566 111-264 (290)
109 PF13041 PPR_2: PPR repeat fam 99.1 4.6E-10 1E-14 70.6 6.3 49 431-479 1-49 (50)
110 KOG2053 Mitochondrial inherita 99.0 2.7E-05 5.8E-10 76.9 43.6 547 6-600 11-606 (932)
111 PLN02789 farnesyltranstransfer 99.0 1.2E-07 2.5E-12 86.3 23.1 227 10-269 45-301 (320)
112 PLN02789 farnesyltranstransfer 99.0 3.1E-07 6.6E-12 83.6 24.6 221 86-322 33-267 (320)
113 PRK14720 transcript cleavage f 99.0 6.6E-05 1.4E-09 76.9 43.9 241 34-321 27-268 (906)
114 TIGR03302 OM_YfiO outer membra 99.0 6.9E-08 1.5E-12 85.8 18.9 182 35-235 30-232 (235)
115 KOG1128 Uncharacterized conser 99.0 4.5E-07 9.8E-12 86.8 24.3 216 347-601 400-615 (777)
116 KOG1070 rRNA processing protei 99.0 5.8E-07 1.3E-11 92.1 26.5 186 399-589 1498-1687(1710)
117 TIGR03302 OM_YfiO outer membra 99.0 1E-07 2.2E-12 84.8 19.5 58 212-269 172-231 (235)
118 KOG1128 Uncharacterized conser 98.9 2.6E-07 5.5E-12 88.4 21.3 222 132-374 395-616 (777)
119 PRK15359 type III secretion sy 98.9 1.9E-08 4.2E-13 80.4 11.6 95 8-105 30-124 (144)
120 KOG1070 rRNA processing protei 98.9 1.4E-06 3E-11 89.4 26.0 220 118-343 1443-1667(1710)
121 KOG3060 Uncharacterized conser 98.9 2.1E-06 4.6E-11 71.4 22.4 204 362-571 11-222 (289)
122 COG5010 TadD Flp pilus assembl 98.9 1E-07 2.2E-12 79.8 14.8 159 35-197 64-229 (257)
123 PRK10370 formate-dependent nit 98.9 8.1E-07 1.8E-11 75.3 20.3 117 481-601 52-172 (198)
124 PRK14720 transcript cleavage f 98.9 1.9E-06 4.2E-11 87.6 25.9 238 169-444 30-268 (906)
125 PRK10370 formate-dependent nit 98.8 5.5E-07 1.2E-11 76.3 17.6 151 79-237 22-175 (198)
126 COG5010 TadD Flp pilus assembl 98.8 1.1E-06 2.5E-11 73.7 18.5 158 174-335 70-227 (257)
127 KOG3060 Uncharacterized conser 98.8 1.5E-05 3.2E-10 66.6 24.5 187 411-602 25-220 (289)
128 PRK15359 type III secretion sy 98.8 5.1E-07 1.1E-11 72.2 15.7 91 508-601 29-120 (144)
129 KOG3081 Vesicle coat complex C 98.8 3.1E-06 6.8E-11 71.0 19.7 235 113-363 21-259 (299)
130 PRK15179 Vi polysaccharide bio 98.7 4.6E-06 9.9E-11 84.2 24.3 216 72-305 27-245 (694)
131 KOG3081 Vesicle coat complex C 98.7 2.4E-05 5.2E-10 65.9 23.8 150 406-566 116-270 (299)
132 PF07079 DUF1347: Protein of u 98.7 0.00026 5.7E-09 64.6 42.6 156 10-182 14-179 (549)
133 PRK15179 Vi polysaccharide bio 98.7 1.5E-05 3.2E-10 80.6 25.3 131 432-566 85-216 (694)
134 TIGR02552 LcrH_SycD type III s 98.6 1.8E-06 3.8E-11 69.1 14.9 96 503-601 17-113 (135)
135 COG4783 Putative Zn-dependent 98.6 8.5E-05 1.9E-09 68.5 26.9 147 172-339 308-454 (484)
136 KOG0550 Molecular chaperone (D 98.6 3.1E-05 6.7E-10 69.4 22.4 274 284-568 57-351 (486)
137 TIGR02552 LcrH_SycD type III s 98.6 2.7E-06 5.8E-11 68.0 14.5 117 455-577 5-122 (135)
138 KOG0550 Molecular chaperone (D 98.6 3.9E-05 8.5E-10 68.8 22.4 90 251-340 259-351 (486)
139 PRK15363 pathogenicity island 98.5 1E-06 2.3E-11 68.7 10.2 92 7-101 40-131 (157)
140 COG4783 Putative Zn-dependent 98.5 5.9E-05 1.3E-09 69.5 22.7 147 278-462 308-454 (484)
141 PRK10866 outer membrane biogen 98.5 1.2E-05 2.6E-10 70.5 17.6 59 140-198 180-240 (243)
142 COG3898 Uncharacterized membra 98.5 0.00025 5.4E-09 63.3 24.7 280 14-305 96-392 (531)
143 PF12854 PPR_1: PPR repeat 98.4 3.2E-07 7E-12 51.4 3.9 32 568-599 2-33 (34)
144 TIGR02795 tol_pal_ybgF tol-pal 98.4 5.3E-06 1.1E-10 64.6 11.3 102 6-107 6-110 (119)
145 PF09976 TPR_21: Tetratricopep 98.4 3.2E-05 6.9E-10 62.3 15.3 116 481-599 24-144 (145)
146 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.9E-05 4.2E-10 73.5 15.7 121 473-600 174-295 (395)
147 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.8E-05 3.8E-10 73.7 15.2 123 210-337 173-295 (395)
148 PLN03088 SGT1, suppressor of 98.3 4.7E-06 1E-10 78.1 11.6 100 7-109 7-106 (356)
149 PF12854 PPR_1: PPR repeat 98.3 8.1E-07 1.8E-11 49.8 4.0 30 499-528 3-32 (34)
150 PF09976 TPR_21: Tetratricopep 98.3 3.6E-05 7.9E-10 61.9 15.1 125 436-564 15-144 (145)
151 PRK15363 pathogenicity island 98.3 2.4E-05 5.2E-10 61.3 12.7 94 505-601 37-131 (157)
152 PF12895 Apc3: Anaphase-promot 98.3 7.4E-07 1.6E-11 63.8 3.5 83 15-99 2-84 (84)
153 KOG0553 TPR repeat-containing 98.3 1.5E-05 3.2E-10 68.6 11.3 102 475-581 88-190 (304)
154 COG5107 RNA14 Pre-mRNA 3'-end 98.2 0.0038 8.3E-08 57.2 36.7 144 470-618 399-545 (660)
155 PF07079 DUF1347: Protein of u 98.2 0.0041 8.9E-08 57.2 43.5 455 110-613 16-530 (549)
156 KOG2041 WD40 repeat protein [G 98.2 0.0021 4.6E-08 62.1 25.7 211 71-334 690-902 (1189)
157 PF13432 TPR_16: Tetratricopep 98.2 4.8E-06 1E-10 56.1 6.3 60 8-69 3-62 (65)
158 cd00189 TPR Tetratricopeptide 98.2 9.4E-06 2E-10 60.4 8.6 95 5-102 3-97 (100)
159 PF14938 SNAP: Soluble NSF att 98.2 0.00018 3.8E-09 65.5 17.8 121 150-270 89-225 (282)
160 KOG0553 TPR repeat-containing 98.2 5.1E-05 1.1E-09 65.4 13.0 131 440-574 88-222 (304)
161 PF13525 YfiO: Outer membrane 98.2 5.1E-05 1.1E-09 65.0 13.1 173 8-191 11-199 (203)
162 TIGR02795 tol_pal_ybgF tol-pal 98.2 9.2E-05 2E-09 57.6 13.6 95 505-602 4-105 (119)
163 PRK02603 photosystem I assembl 98.2 5.5E-05 1.2E-09 63.1 12.7 87 8-95 41-128 (172)
164 COG4700 Uncharacterized protei 98.1 0.00041 8.8E-09 55.1 16.1 156 9-195 63-218 (251)
165 PLN03088 SGT1, suppressor of 98.1 8.7E-05 1.9E-09 69.7 14.9 104 473-580 7-110 (356)
166 PF14938 SNAP: Soluble NSF att 98.1 0.00098 2.1E-08 60.7 21.2 124 473-599 119-263 (282)
167 COG4700 Uncharacterized protei 98.1 0.0011 2.4E-08 52.8 18.0 128 465-594 86-214 (251)
168 COG4235 Cytochrome c biogenesi 98.1 0.0002 4.3E-09 62.4 15.1 120 491-616 145-268 (287)
169 PF13432 TPR_16: Tetratricopep 98.1 9.3E-06 2E-10 54.7 5.8 63 43-106 2-64 (65)
170 KOG2041 WD40 repeat protein [G 98.1 0.007 1.5E-07 58.7 25.8 177 167-369 689-876 (1189)
171 PRK10866 outer membrane biogen 98.1 0.0037 8E-08 55.0 22.8 67 276-342 32-101 (243)
172 PF12895 Apc3: Anaphase-promot 98.1 1.3E-05 2.7E-10 57.4 6.2 79 255-334 3-82 (84)
173 PF04840 Vps16_C: Vps16, C-ter 98.1 0.0093 2E-07 54.6 29.0 279 3-332 1-284 (319)
174 COG4235 Cytochrome c biogenesi 98.0 0.0001 2.2E-09 64.1 12.3 118 20-165 140-257 (287)
175 COG5107 RNA14 Pre-mRNA 3'-end 98.0 0.01 2.3E-07 54.5 38.8 433 60-532 30-531 (660)
176 cd00189 TPR Tetratricopeptide 98.0 9.6E-05 2.1E-09 54.8 11.0 91 507-600 4-95 (100)
177 PF14559 TPR_19: Tetratricopep 98.0 1.1E-05 2.5E-10 55.0 4.6 55 12-68 1-55 (68)
178 PF13414 TPR_11: TPR repeat; P 98.0 3.3E-05 7.1E-10 52.8 6.8 66 37-103 2-68 (69)
179 PRK10803 tol-pal system protei 98.0 8.1E-05 1.8E-09 65.8 10.8 92 14-105 155-249 (263)
180 COG4105 ComL DNA uptake lipopr 98.0 0.0022 4.7E-08 54.8 18.4 57 141-198 173-232 (254)
181 CHL00033 ycf3 photosystem I as 98.0 0.00031 6.8E-09 58.3 13.8 93 242-334 36-137 (168)
182 PF12688 TPR_5: Tetratrico pep 97.9 0.0002 4.4E-09 54.2 10.8 92 7-99 6-101 (120)
183 CHL00033 ycf3 photosystem I as 97.9 0.00015 3.3E-09 60.2 11.3 90 13-102 10-101 (168)
184 PRK15331 chaperone protein Sic 97.9 7.7E-05 1.7E-09 58.8 8.7 87 12-101 47-133 (165)
185 PRK02603 photosystem I assembl 97.9 0.00073 1.6E-08 56.3 15.3 83 244-326 38-122 (172)
186 PF05843 Suf: Suppressor of fo 97.9 0.00034 7.4E-09 63.3 14.0 129 435-566 3-135 (280)
187 KOG1130 Predicted G-alpha GTPa 97.9 0.00023 5E-09 64.0 11.9 81 45-125 24-120 (639)
188 PF12688 TPR_5: Tetratrico pep 97.9 0.0015 3.3E-08 49.5 14.8 92 247-338 7-103 (120)
189 PF13414 TPR_11: TPR repeat; P 97.9 6.3E-05 1.4E-09 51.4 6.6 63 503-566 3-66 (69)
190 PRK10153 DNA-binding transcrip 97.9 0.0012 2.6E-08 64.9 17.5 143 429-577 333-490 (517)
191 KOG1130 Predicted G-alpha GTPa 97.8 0.00028 6.1E-09 63.5 11.7 225 145-369 27-299 (639)
192 PF13525 YfiO: Outer membrane 97.8 0.0075 1.6E-07 51.7 20.1 65 276-340 5-72 (203)
193 KOG2796 Uncharacterized conser 97.8 0.0022 4.7E-08 54.3 15.6 125 39-164 178-315 (366)
194 PRK10153 DNA-binding transcrip 97.8 0.0018 3.8E-08 63.8 17.8 134 464-601 333-481 (517)
195 PF05843 Suf: Suppressor of fo 97.8 0.00065 1.4E-08 61.5 13.7 131 399-532 2-136 (280)
196 TIGR00756 PPR pentatricopeptid 97.8 5.1E-05 1.1E-09 43.4 4.4 33 575-607 2-34 (35)
197 PF13371 TPR_9: Tetratricopept 97.8 9.4E-05 2E-09 51.2 6.5 60 8-69 1-60 (73)
198 PF14559 TPR_19: Tetratricopep 97.8 4.8E-05 1E-09 51.8 4.7 57 49-106 2-58 (68)
199 TIGR00756 PPR pentatricopeptid 97.7 6E-05 1.3E-09 43.1 4.3 33 435-467 2-34 (35)
200 PF10037 MRP-S27: Mitochondria 97.7 0.00066 1.4E-08 63.8 13.0 124 463-586 61-186 (429)
201 PF13812 PPR_3: Pentatricopept 97.7 7.5E-05 1.6E-09 42.3 4.4 32 575-606 3-34 (34)
202 PF08579 RPM2: Mitochondrial r 97.7 0.00077 1.7E-08 48.9 10.0 74 547-620 34-116 (120)
203 COG1729 Uncharacterized protei 97.7 0.00044 9.6E-09 59.5 10.5 100 10-109 149-251 (262)
204 PRK10803 tol-pal system protei 97.7 0.00067 1.5E-08 60.1 12.0 101 39-164 143-246 (263)
205 PF13812 PPR_3: Pentatricopept 97.7 9.2E-05 2E-09 41.9 4.3 32 540-571 3-34 (34)
206 PF10037 MRP-S27: Mitochondria 97.7 0.0011 2.4E-08 62.4 13.5 124 428-551 61-186 (429)
207 COG3898 Uncharacterized membra 97.7 0.042 9.1E-07 49.8 31.1 118 218-339 96-217 (531)
208 COG4105 ComL DNA uptake lipopr 97.6 0.012 2.6E-07 50.4 17.8 179 36-235 32-233 (254)
209 KOG2796 Uncharacterized conser 97.6 0.033 7.1E-07 47.5 20.2 140 435-577 179-323 (366)
210 PF13512 TPR_18: Tetratricopep 97.6 0.00098 2.1E-08 51.4 9.6 64 10-73 18-82 (142)
211 KOG1258 mRNA processing protei 97.6 0.09 2E-06 50.8 33.4 321 36-372 43-393 (577)
212 COG4785 NlpI Lipoprotein NlpI, 97.6 0.0048 1.1E-07 50.7 13.7 87 18-107 81-167 (297)
213 PF13512 TPR_18: Tetratricopep 97.4 0.0031 6.8E-08 48.7 10.7 75 35-109 7-83 (142)
214 KOG1538 Uncharacterized conser 97.4 0.062 1.3E-06 52.1 21.0 99 275-390 746-844 (1081)
215 PF08579 RPM2: Mitochondrial r 97.4 0.0035 7.5E-08 45.6 10.0 76 510-585 32-116 (120)
216 KOG1585 Protein required for f 97.4 0.026 5.6E-07 47.6 16.2 206 75-299 33-250 (308)
217 PF13371 TPR_9: Tetratricopept 97.4 0.0013 2.8E-08 45.5 7.6 54 512-566 4-57 (73)
218 PRK15331 chaperone protein Sic 97.4 0.016 3.5E-07 46.0 14.2 92 247-339 43-134 (165)
219 PF01535 PPR: PPR repeat; Int 97.3 0.00043 9.4E-09 38.0 3.6 28 435-462 2-29 (31)
220 COG3118 Thioredoxin domain-con 97.3 0.042 9.1E-07 48.1 16.9 153 42-224 138-290 (304)
221 KOG1538 Uncharacterized conser 97.3 0.088 1.9E-06 51.1 20.4 271 173-496 559-845 (1081)
222 KOG0543 FKBP-type peptidyl-pro 97.3 0.0088 1.9E-07 54.6 13.4 96 503-601 257-354 (397)
223 PF01535 PPR: PPR repeat; Int 97.3 0.00049 1.1E-08 37.8 3.6 29 575-603 2-30 (31)
224 PF03704 BTAD: Bacterial trans 97.2 0.021 4.6E-07 46.1 14.2 73 277-349 63-140 (146)
225 PF03704 BTAD: Bacterial trans 97.2 0.006 1.3E-07 49.2 11.0 58 138-196 65-122 (146)
226 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.0048 1E-07 57.7 10.8 100 500-605 72-177 (453)
227 COG1729 Uncharacterized protei 97.2 0.0056 1.2E-07 52.9 10.4 99 41-164 144-244 (262)
228 KOG1258 mRNA processing protei 97.1 0.28 6.1E-06 47.6 36.3 134 169-305 44-180 (577)
229 PF13424 TPR_12: Tetratricopep 97.1 0.0013 2.9E-08 46.1 5.7 61 505-565 7-73 (78)
230 KOG2114 Vacuolar assembly/sort 97.1 0.38 8.2E-06 48.6 24.6 52 544-599 711-762 (933)
231 PF13281 DUF4071: Domain of un 97.1 0.24 5.2E-06 46.1 21.5 76 403-478 146-227 (374)
232 PF13281 DUF4071: Domain of un 97.1 0.21 4.5E-06 46.4 20.4 169 436-608 144-338 (374)
233 PF13424 TPR_12: Tetratricopep 97.1 0.002 4.4E-08 45.2 6.1 64 538-601 5-74 (78)
234 PF10300 DUF3808: Protein of u 97.1 0.018 4E-07 56.4 14.7 97 2-100 185-294 (468)
235 KOG2280 Vacuolar assembly/sort 97.0 0.42 9E-06 47.7 24.3 332 4-369 439-794 (829)
236 KOG2280 Vacuolar assembly/sort 96.9 0.53 1.1E-05 47.0 26.8 112 468-598 684-795 (829)
237 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.021 4.5E-07 53.6 12.6 68 34-102 71-141 (453)
238 COG3118 Thioredoxin domain-con 96.9 0.16 3.5E-06 44.7 16.7 49 182-232 146-194 (304)
239 PF06239 ECSIT: Evolutionarily 96.8 0.023 5.1E-07 47.3 10.9 97 488-586 34-151 (228)
240 KOG0543 FKBP-type peptidyl-pro 96.8 0.021 4.5E-07 52.3 11.2 96 136-234 258-354 (397)
241 KOG2114 Vacuolar assembly/sort 96.8 0.74 1.6E-05 46.7 22.8 83 9-99 375-457 (933)
242 KOG1586 Protein required for f 96.8 0.27 5.9E-06 41.4 19.5 29 244-272 157-185 (288)
243 PF04184 ST7: ST7 protein; In 96.7 0.39 8.4E-06 45.7 19.2 64 171-234 260-323 (539)
244 PF06239 ECSIT: Evolutionarily 96.7 0.055 1.2E-06 45.2 12.4 107 453-564 34-161 (228)
245 PF13428 TPR_14: Tetratricopep 96.7 0.0044 9.6E-08 37.3 4.7 39 40-79 3-41 (44)
246 KOG4555 TPR repeat-containing 96.7 0.029 6.3E-07 42.0 9.5 85 45-130 50-145 (175)
247 PF10300 DUF3808: Protein of u 96.6 0.19 4E-06 49.5 17.8 162 436-600 191-374 (468)
248 KOG2610 Uncharacterized conser 96.6 0.048 1E-06 48.3 12.0 149 82-233 112-274 (491)
249 PRK11906 transcriptional regul 96.6 0.14 3E-06 48.4 15.3 148 448-600 273-434 (458)
250 PF13428 TPR_14: Tetratricopep 96.5 0.0098 2.1E-07 35.8 5.3 40 278-317 3-42 (44)
251 KOG4555 TPR repeat-containing 96.5 0.11 2.3E-06 39.2 11.2 84 82-165 52-145 (175)
252 COG0457 NrfG FOG: TPR repeat [ 96.4 0.63 1.4E-05 41.4 25.5 203 135-339 59-265 (291)
253 KOG2396 HAT (Half-A-TPR) repea 96.4 0.92 2E-05 43.2 38.5 100 465-566 456-558 (568)
254 PRK11906 transcriptional regul 96.3 0.36 7.8E-06 45.8 16.5 149 413-566 273-435 (458)
255 COG4649 Uncharacterized protei 96.3 0.18 3.8E-06 40.2 11.9 140 36-200 57-197 (221)
256 PF04840 Vps16_C: Vps16, C-ter 96.2 1 2.2E-05 41.6 29.3 107 402-528 181-287 (319)
257 PF12921 ATP13: Mitochondrial 96.2 0.093 2E-06 40.4 10.0 29 502-530 1-29 (126)
258 KOG1585 Protein required for f 96.1 0.72 1.6E-05 39.3 19.2 209 209-456 34-250 (308)
259 KOG1941 Acetylcholine receptor 96.1 1.1 2.3E-05 40.8 20.2 167 172-338 85-274 (518)
260 PF04184 ST7: ST7 protein; In 96.1 0.18 4E-06 47.8 13.1 61 6-66 263-323 (539)
261 KOG1941 Acetylcholine receptor 96.0 1.1 2.5E-05 40.6 18.4 130 402-531 126-274 (518)
262 KOG2610 Uncharacterized conser 95.9 0.29 6.3E-06 43.7 12.7 151 181-335 114-272 (491)
263 COG4649 Uncharacterized protei 95.9 0.73 1.6E-05 37.0 14.3 122 110-234 68-195 (221)
264 COG0457 NrfG FOG: TPR repeat [ 95.8 1.3 2.7E-05 39.4 29.3 199 399-601 60-264 (291)
265 PF04053 Coatomer_WDAD: Coatom 95.7 0.8 1.7E-05 44.5 16.3 26 398-423 347-372 (443)
266 PF08631 SPO22: Meiosis protei 95.7 1.6 3.5E-05 39.7 24.9 101 243-345 86-192 (278)
267 PF13431 TPR_17: Tetratricopep 95.6 0.011 2.3E-07 33.1 2.2 32 25-58 2-33 (34)
268 smart00299 CLH Clathrin heavy 95.6 0.88 1.9E-05 36.3 14.3 124 473-619 12-136 (140)
269 PF06552 TOM20_plant: Plant sp 95.6 0.099 2.2E-06 42.2 8.2 117 18-165 7-137 (186)
270 PF04053 Coatomer_WDAD: Coatom 95.4 1.6 3.5E-05 42.5 17.1 101 215-335 270-372 (443)
271 COG3629 DnrI DNA-binding trans 95.3 0.26 5.6E-06 43.7 10.6 75 503-578 153-232 (280)
272 COG4785 NlpI Lipoprotein NlpI, 95.3 1.5 3.2E-05 36.8 16.3 181 112-304 77-265 (297)
273 PF12921 ATP13: Mitochondrial 95.2 0.31 6.6E-06 37.6 9.5 98 134-252 1-99 (126)
274 PF00515 TPR_1: Tetratricopept 95.2 0.05 1.1E-06 30.4 4.0 31 540-572 3-33 (34)
275 KOG4648 Uncharacterized conser 95.1 0.066 1.4E-06 47.6 6.4 90 9-101 104-193 (536)
276 PF07719 TPR_2: Tetratricopept 94.9 0.067 1.4E-06 29.8 4.0 27 540-566 3-29 (34)
277 PF08631 SPO22: Meiosis protei 94.8 3.1 6.8E-05 37.9 27.4 129 322-462 5-150 (278)
278 smart00299 CLH Clathrin heavy 94.8 1.6 3.6E-05 34.7 15.0 40 247-287 13-52 (140)
279 PF13431 TPR_17: Tetratricopep 94.8 0.051 1.1E-06 30.3 3.3 32 299-330 2-33 (34)
280 COG2976 Uncharacterized protei 94.8 0.14 3.1E-06 41.8 6.9 90 39-130 90-189 (207)
281 KOG4234 TPR repeat-containing 94.7 1 2.3E-05 37.1 11.5 97 474-574 101-202 (271)
282 KOG1920 IkappaB kinase complex 94.6 7.7 0.00017 41.7 20.2 54 510-566 972-1027(1265)
283 PRK11619 lytic murein transgly 94.6 6.5 0.00014 40.7 30.7 326 214-565 41-373 (644)
284 PF13176 TPR_7: Tetratricopept 94.6 0.087 1.9E-06 29.9 3.9 25 541-565 2-26 (36)
285 PF09205 DUF1955: Domain of un 94.5 1.6 3.4E-05 33.3 14.0 66 503-569 86-151 (161)
286 KOG1920 IkappaB kinase complex 94.4 6.3 0.00014 42.3 19.0 271 20-336 775-1052(1265)
287 PRK15180 Vi polysaccharide bio 94.4 4.8 0.00011 38.3 28.7 113 15-130 302-421 (831)
288 COG2909 MalT ATP-dependent tra 94.3 7.8 0.00017 40.3 27.4 224 78-301 420-684 (894)
289 PF10602 RPN7: 26S proteasome 94.3 0.8 1.7E-05 38.1 10.6 97 504-600 37-140 (177)
290 PF09613 HrpB1_HrpK: Bacterial 94.2 1.6 3.5E-05 34.9 11.4 45 84-128 21-72 (160)
291 PF07719 TPR_2: Tetratricopept 94.1 0.15 3.2E-06 28.3 4.4 29 40-68 3-31 (34)
292 COG3629 DnrI DNA-binding trans 94.1 0.76 1.6E-05 40.9 10.5 79 276-354 153-236 (280)
293 KOG4234 TPR repeat-containing 94.0 1.7 3.8E-05 35.8 11.4 93 248-340 102-198 (271)
294 KOG0890 Protein kinase of the 94.0 16 0.00035 42.8 26.3 152 211-369 1388-1542(2382)
295 KOG0890 Protein kinase of the 94.0 16 0.00035 42.7 32.9 310 43-374 1388-1731(2382)
296 PF00515 TPR_1: Tetratricopept 94.0 0.15 3.3E-06 28.3 4.2 29 40-68 3-31 (34)
297 PF13174 TPR_6: Tetratricopept 93.9 0.097 2.1E-06 28.8 3.3 29 76-104 3-31 (33)
298 PF06552 TOM20_plant: Plant sp 93.8 0.55 1.2E-05 38.1 8.2 60 520-583 52-123 (186)
299 PF10345 Cohesin_load: Cohesin 93.7 9.8 0.00021 39.5 36.9 94 7-101 64-167 (608)
300 KOG1550 Extracellular protein 93.6 9.3 0.0002 38.9 25.7 143 186-340 228-394 (552)
301 PRK11619 lytic murein transgly 93.6 10 0.00022 39.3 34.8 59 278-336 314-372 (644)
302 PF04910 Tcf25: Transcriptiona 93.5 7 0.00015 37.0 19.8 121 69-198 36-167 (360)
303 PF02259 FAT: FAT domain; Int 93.3 7.7 0.00017 37.0 22.5 116 467-584 145-303 (352)
304 KOG1586 Protein required for f 93.3 4.8 0.0001 34.4 21.0 57 513-571 164-226 (288)
305 PF13176 TPR_7: Tetratricopept 93.1 0.24 5.3E-06 28.0 4.0 26 575-600 1-26 (36)
306 KOG3941 Intermediate in Toll s 93.1 1.1 2.3E-05 39.2 9.3 88 500-587 64-172 (406)
307 PF11207 DUF2989: Protein of u 93.1 1.2 2.6E-05 37.2 9.3 80 513-594 117-199 (203)
308 TIGR02561 HrpB1_HrpK type III 93.1 3 6.5E-05 32.8 10.8 46 85-130 22-74 (153)
309 COG2976 Uncharacterized protei 92.9 4.7 0.0001 33.4 15.0 92 510-603 96-189 (207)
310 PF13181 TPR_8: Tetratricopept 92.8 0.19 4E-06 28.0 3.3 27 540-566 3-29 (34)
311 KOG4648 Uncharacterized conser 92.5 0.85 1.8E-05 41.0 8.2 95 475-573 104-198 (536)
312 PF09613 HrpB1_HrpK: Bacterial 92.5 4.8 0.0001 32.3 14.6 54 477-532 19-73 (160)
313 PF08424 NRDE-2: NRDE-2, neces 92.1 6.4 0.00014 36.7 14.2 83 24-109 7-101 (321)
314 PF00637 Clathrin: Region in C 92.0 0.0045 9.7E-08 49.8 -5.9 53 475-527 14-66 (143)
315 PF09205 DUF1955: Domain of un 91.9 4.6 0.0001 30.9 14.8 31 502-532 119-149 (161)
316 PF02259 FAT: FAT domain; Int 91.8 12 0.00026 35.6 24.6 53 248-304 5-57 (352)
317 KOG3941 Intermediate in Toll s 91.7 2.3 5.1E-05 37.2 9.7 98 465-565 64-182 (406)
318 PRK13184 pknD serine/threonine 91.6 23 0.00049 38.4 27.3 105 3-109 476-588 (932)
319 PF10602 RPN7: 26S proteasome 91.5 2.1 4.5E-05 35.7 9.2 64 538-601 36-101 (177)
320 PF07035 Mic1: Colon cancer-as 91.4 6.9 0.00015 31.9 15.5 134 121-269 15-148 (167)
321 KOG0276 Vesicle coat complex C 91.1 2.6 5.6E-05 41.3 10.3 100 49-161 648-747 (794)
322 KOG4642 Chaperone-dependent E3 90.9 9.7 0.00021 32.8 12.3 93 6-101 7-106 (284)
323 KOG0276 Vesicle coat complex C 90.9 4.6 9.9E-05 39.7 11.7 132 73-230 614-745 (794)
324 TIGR02561 HrpB1_HrpK type III 90.8 6.8 0.00015 30.9 11.5 54 287-340 21-74 (153)
325 PF14561 TPR_20: Tetratricopep 90.7 1.7 3.8E-05 31.1 7.0 73 22-96 8-81 (90)
326 PF13174 TPR_6: Tetratricopept 90.5 0.36 7.9E-06 26.4 2.8 29 40-68 2-30 (33)
327 PF00637 Clathrin: Region in C 90.4 0.028 6E-07 45.2 -2.6 130 5-149 10-139 (143)
328 PF11207 DUF2989: Protein of u 90.3 5.4 0.00012 33.4 10.2 78 479-558 118-198 (203)
329 cd00923 Cyt_c_Oxidase_Va Cytoc 90.2 2.2 4.8E-05 30.5 6.7 48 117-164 24-71 (103)
330 PF13181 TPR_8: Tetratricopept 90.2 0.9 2E-05 25.1 4.3 27 75-101 3-29 (34)
331 PF13170 DUF4003: Protein of u 90.0 15 0.00033 33.6 17.9 130 450-581 79-225 (297)
332 KOG1550 Extracellular protein 89.9 25 0.00054 36.0 27.8 243 323-602 262-538 (552)
333 PF13374 TPR_10: Tetratricopep 89.8 0.86 1.9E-05 26.7 4.3 28 539-566 3-30 (42)
334 KOG2066 Vacuolar assembly/sort 89.8 26 0.00057 36.0 24.5 24 314-337 509-532 (846)
335 PF02284 COX5A: Cytochrome c o 89.8 6.1 0.00013 28.7 9.0 46 521-566 28-73 (108)
336 PF02284 COX5A: Cytochrome c o 89.7 2.7 5.9E-05 30.4 7.0 59 118-177 28-86 (108)
337 KOG4642 Chaperone-dependent E3 89.6 4.2 9.1E-05 34.8 9.2 119 477-599 19-143 (284)
338 KOG4507 Uncharacterized conser 89.2 2 4.2E-05 41.9 7.9 110 469-581 608-718 (886)
339 KOG2471 TPR repeat-containing 89.0 23 0.00049 34.3 16.7 78 541-619 286-380 (696)
340 KOG4570 Uncharacterized conser 88.9 5.4 0.00012 35.7 9.7 100 465-566 61-163 (418)
341 KOG2062 26S proteasome regulat 88.4 32 0.0007 35.2 34.8 120 477-600 510-633 (929)
342 PF09986 DUF2225: Uncharacteri 88.4 12 0.00025 32.4 11.5 63 540-602 120-194 (214)
343 KOG2063 Vacuolar assembly/sort 88.2 30 0.00064 36.9 16.0 125 40-182 506-638 (877)
344 KOG4507 Uncharacterized conser 87.8 7.9 0.00017 38.0 10.8 62 7-70 254-315 (886)
345 KOG2422 Uncharacterized conser 87.4 32 0.0007 34.1 20.6 175 50-233 250-446 (665)
346 PF13374 TPR_10: Tetratricopep 87.0 1.8 3.8E-05 25.3 4.4 29 503-531 2-30 (42)
347 KOG2396 HAT (Half-A-TPR) repea 86.7 32 0.0007 33.4 38.9 100 500-601 456-558 (568)
348 PF07721 TPR_4: Tetratricopept 86.6 0.82 1.8E-05 23.5 2.3 15 9-23 8-22 (26)
349 COG3947 Response regulator con 86.5 23 0.00051 31.6 16.0 58 280-337 283-340 (361)
350 TIGR03504 FimV_Cterm FimV C-te 86.5 1.9 4E-05 25.8 4.0 24 543-566 4-27 (44)
351 PF07035 Mic1: Colon cancer-as 86.5 17 0.00036 29.8 15.5 122 227-363 15-138 (167)
352 PF07721 TPR_4: Tetratricopept 86.3 0.96 2.1E-05 23.2 2.4 20 77-96 5-24 (26)
353 COG0790 FOG: TPR repeat, SEL1 86.3 27 0.00059 32.1 24.9 190 410-612 53-276 (292)
354 KOG3364 Membrane protein invol 86.0 14 0.00031 28.6 9.8 71 500-573 29-104 (149)
355 KOG1464 COP9 signalosome, subu 85.4 25 0.00054 30.9 20.2 248 281-543 70-342 (440)
356 PF10345 Cohesin_load: Cohesin 85.4 50 0.0011 34.4 42.6 185 117-302 38-251 (608)
357 PRK09687 putative lyase; Provi 85.3 29 0.00063 31.6 28.4 203 397-620 67-279 (280)
358 PF04097 Nic96: Nup93/Nic96; 85.3 50 0.0011 34.3 17.9 41 247-288 117-157 (613)
359 COG3947 Response regulator con 85.3 27 0.00059 31.2 16.4 71 540-612 281-357 (361)
360 KOG1464 COP9 signalosome, subu 85.2 26 0.00055 30.9 22.9 251 290-562 41-327 (440)
361 TIGR03504 FimV_Cterm FimV C-te 85.0 2.4 5.2E-05 25.3 3.9 23 579-601 5-27 (44)
362 KOG0545 Aryl-hydrocarbon recep 84.8 8.5 0.00018 33.2 8.4 21 9-29 185-205 (329)
363 PF14853 Fis1_TPR_C: Fis1 C-te 84.3 5.3 0.00011 25.1 5.4 31 542-574 5-35 (53)
364 smart00028 TPR Tetratricopepti 84.1 1.9 4.1E-05 22.8 3.4 26 541-566 4-29 (34)
365 PF14853 Fis1_TPR_C: Fis1 C-te 84.1 7.1 0.00015 24.5 5.9 41 576-618 4-44 (53)
366 KOG3364 Membrane protein invol 84.1 18 0.00039 28.1 9.4 70 240-309 31-104 (149)
367 PF10579 Rapsyn_N: Rapsyn N-te 83.7 3.6 7.7E-05 28.2 4.7 48 550-597 18-67 (80)
368 cd00923 Cyt_c_Oxidase_Va Cytoc 83.5 14 0.00031 26.6 9.7 46 521-566 25-70 (103)
369 PRK10941 hypothetical protein; 83.5 8.2 0.00018 34.7 8.4 62 47-109 190-251 (269)
370 KOG0376 Serine-threonine phosp 83.2 1.4 3E-05 41.9 3.6 95 12-109 14-108 (476)
371 KOG1308 Hsp70-interacting prot 82.9 1 2.2E-05 40.7 2.5 118 479-601 125-243 (377)
372 PF13929 mRNA_stabil: mRNA sta 82.7 36 0.00078 30.6 15.3 138 148-285 141-287 (292)
373 PF07163 Pex26: Pex26 protein; 81.5 21 0.00046 31.7 9.7 89 473-561 88-181 (309)
374 PF08424 NRDE-2: NRDE-2, neces 81.2 48 0.001 31.0 18.4 59 260-319 50-108 (321)
375 PRK10941 hypothetical protein; 80.7 31 0.00066 31.1 11.0 75 543-619 186-262 (269)
376 KOG3807 Predicted membrane pro 80.5 34 0.00073 31.2 10.8 23 176-198 281-303 (556)
377 KOG2300 Uncharacterized conser 80.1 61 0.0013 31.5 34.5 331 7-339 51-474 (629)
378 KOG4570 Uncharacterized conser 80.0 22 0.00048 32.1 9.4 104 164-269 58-163 (418)
379 COG4455 ImpE Protein of avirul 80.0 19 0.00041 30.7 8.5 51 214-265 9-59 (273)
380 KOG0376 Serine-threonine phosp 79.3 4.9 0.00011 38.4 5.7 105 475-585 11-117 (476)
381 smart00028 TPR Tetratricopepti 79.3 2.6 5.6E-05 22.2 2.7 24 43-66 6-29 (34)
382 PF14929 TAF1_subA: TAF RNA Po 79.2 52 0.0011 33.2 12.9 15 204-218 409-423 (547)
383 KOG2062 26S proteasome regulat 79.0 84 0.0018 32.5 36.8 121 442-566 510-634 (929)
384 COG4976 Predicted methyltransf 79.0 13 0.00028 31.9 7.4 59 10-70 3-61 (287)
385 PRK09687 putative lyase; Provi 78.9 52 0.0011 30.0 29.0 137 432-584 141-278 (280)
386 KOG4077 Cytochrome c oxidase, 78.3 18 0.00038 27.6 7.1 46 521-566 67-112 (149)
387 COG1747 Uncharacterized N-term 77.9 74 0.0016 31.3 25.5 182 203-391 63-251 (711)
388 PF12862 Apc5: Anaphase-promot 77.8 8 0.00017 28.1 5.5 56 13-68 9-71 (94)
389 PF09986 DUF2225: Uncharacteri 77.8 46 0.001 28.8 12.8 88 481-568 90-195 (214)
390 PF04097 Nic96: Nup93/Nic96; 76.4 1E+02 0.0022 32.1 26.8 17 583-599 515-531 (613)
391 PF14561 TPR_20: Tetratricopep 76.4 26 0.00056 25.2 8.2 32 169-200 21-52 (90)
392 KOG2066 Vacuolar assembly/sort 75.4 1.1E+02 0.0024 32.0 28.7 103 213-322 363-467 (846)
393 KOG3824 Huntingtin interacting 75.1 5.4 0.00012 35.5 4.5 69 47-116 125-193 (472)
394 PF14689 SPOB_a: Sensor_kinase 75.0 8 0.00017 25.3 4.3 29 572-600 22-50 (62)
395 KOG2908 26S proteasome regulat 74.7 49 0.0011 30.4 10.2 53 479-531 86-143 (380)
396 KOG0551 Hsp90 co-chaperone CNS 74.3 25 0.00055 32.1 8.4 96 470-566 83-181 (390)
397 PF13170 DUF4003: Protein of u 74.2 73 0.0016 29.4 22.3 25 326-350 78-102 (297)
398 COG4455 ImpE Protein of avirul 74.0 49 0.0011 28.4 9.3 77 470-547 3-81 (273)
399 PRK12798 chemotaxis protein; R 72.7 92 0.002 29.9 21.9 197 410-610 124-332 (421)
400 KOG4077 Cytochrome c oxidase, 72.6 33 0.00071 26.2 7.2 49 260-308 68-116 (149)
401 KOG1308 Hsp70-interacting prot 72.4 5.5 0.00012 36.2 4.0 118 444-566 125-243 (377)
402 KOG2471 TPR repeat-containing 72.3 1E+02 0.0022 30.2 28.2 277 44-323 23-382 (696)
403 KOG0545 Aryl-hydrocarbon recep 72.0 68 0.0015 28.1 11.2 66 505-573 232-297 (329)
404 PF07163 Pex26: Pex26 protein; 71.1 78 0.0017 28.4 12.3 90 139-229 87-181 (309)
405 PF04190 DUF410: Protein of un 70.4 83 0.0018 28.4 16.8 158 85-270 2-170 (260)
406 PF07575 Nucleopor_Nup85: Nup8 70.3 1.4E+02 0.003 30.9 18.0 25 73-98 149-173 (566)
407 KOG0687 26S proteasome regulat 69.9 91 0.002 28.7 15.3 98 397-496 103-209 (393)
408 PF12862 Apc5: Anaphase-promot 69.4 31 0.00066 25.0 6.8 52 515-566 10-69 (94)
409 PF10579 Rapsyn_N: Rapsyn N-te 69.0 20 0.00043 24.7 5.1 47 515-561 18-66 (80)
410 COG4941 Predicted RNA polymera 68.1 1E+02 0.0022 28.5 13.7 117 150-271 271-395 (415)
411 KOG2422 Uncharacterized conser 67.2 1.4E+02 0.0031 29.9 15.9 157 410-566 250-447 (665)
412 TIGR02508 type_III_yscG type I 66.5 48 0.001 24.2 7.2 49 111-165 50-98 (115)
413 KOG3824 Huntingtin interacting 66.0 33 0.00071 30.9 7.2 48 83-130 126-180 (472)
414 PF02184 HAT: HAT (Half-A-TPR) 65.8 16 0.00035 20.0 3.4 23 554-578 3-25 (32)
415 smart00386 HAT HAT (Half-A-TPR 65.7 19 0.0004 19.1 4.2 27 291-317 2-28 (33)
416 PF11846 DUF3366: Domain of un 65.6 19 0.00041 30.6 5.9 32 569-600 140-171 (193)
417 PF11663 Toxin_YhaV: Toxin wit 65.2 7.8 0.00017 29.8 3.0 34 583-618 105-138 (140)
418 PF11848 DUF3368: Domain of un 65.1 29 0.00064 21.2 5.1 34 583-616 12-45 (48)
419 COG0790 FOG: TPR repeat, SEL1 64.6 1.2E+02 0.0025 28.0 23.4 147 412-568 91-267 (292)
420 PF07575 Nucleopor_Nup85: Nup8 64.6 1.8E+02 0.0039 30.1 18.8 20 175-194 153-172 (566)
421 PF04190 DUF410: Protein of un 63.4 1.2E+02 0.0025 27.5 16.5 25 502-526 89-113 (260)
422 PF11817 Foie-gras_1: Foie gra 63.0 58 0.0013 29.1 8.7 60 540-599 180-244 (247)
423 KOG4814 Uncharacterized conser 62.8 87 0.0019 31.8 10.0 59 507-566 398-456 (872)
424 PF14689 SPOB_a: Sensor_kinase 62.4 24 0.00052 23.1 4.5 30 537-566 22-51 (62)
425 COG1747 Uncharacterized N-term 61.4 1.8E+02 0.0038 28.9 24.0 148 115-271 81-235 (711)
426 PRK15180 Vi polysaccharide bio 60.2 1.7E+02 0.0038 28.5 33.6 123 145-271 299-421 (831)
427 COG4976 Predicted methyltransf 60.1 23 0.0005 30.4 5.0 53 479-532 6-58 (287)
428 COG0735 Fur Fe2+/Zn2+ uptake r 59.6 51 0.0011 26.4 6.9 59 29-88 12-70 (145)
429 PRK15490 Vi polysaccharide bio 59.2 85 0.0018 31.9 9.6 115 11-132 17-131 (578)
430 PF15297 CKAP2_C: Cytoskeleton 59.1 1.5E+02 0.0032 27.8 10.2 64 519-584 119-186 (353)
431 COG4259 Uncharacterized protei 58.8 48 0.001 24.0 5.6 49 56-104 55-103 (121)
432 KOG0551 Hsp90 co-chaperone CNS 58.6 85 0.0018 29.0 8.5 96 243-338 83-181 (390)
433 PF11846 DUF3366: Domain of un 58.3 59 0.0013 27.6 7.7 36 534-571 140-175 (193)
434 PF09670 Cas_Cas02710: CRISPR- 57.2 1.8E+02 0.0038 28.2 11.2 53 145-198 141-197 (379)
435 PF09670 Cas_Cas02710: CRISPR- 57.0 1.9E+02 0.0041 27.9 12.0 55 442-497 140-198 (379)
436 COG5191 Uncharacterized conser 55.9 61 0.0013 29.4 7.1 71 70-141 104-182 (435)
437 KOG1839 Uncharacterized protei 55.1 1.2E+02 0.0026 33.8 10.4 138 41-198 935-1085(1236)
438 COG2912 Uncharacterized conser 54.9 43 0.00093 29.9 6.1 62 47-109 190-251 (269)
439 PF08311 Mad3_BUB1_I: Mad3/BUB 54.2 1E+02 0.0022 23.9 9.5 44 153-196 81-125 (126)
440 KOG4814 Uncharacterized conser 53.8 1.2E+02 0.0026 30.9 9.3 87 251-338 364-456 (872)
441 KOG4521 Nuclear pore complex, 53.0 2.5E+02 0.0054 31.2 11.9 123 137-263 985-1124(1480)
442 cd00280 TRFH Telomeric Repeat 53.0 1.4E+02 0.0029 25.0 8.1 68 554-624 85-159 (200)
443 PF03745 DUF309: Domain of unk 52.1 61 0.0013 21.2 5.1 48 111-158 10-62 (62)
444 PF10255 Paf67: RNA polymerase 51.6 37 0.0008 32.6 5.6 88 39-126 123-218 (404)
445 PF10516 SHNi-TPR: SHNi-TPR; 51.0 25 0.00054 20.2 2.8 26 5-30 4-29 (38)
446 COG0735 Fur Fe2+/Zn2+ uptake r 50.4 90 0.002 25.0 6.9 48 309-356 19-66 (145)
447 PF03745 DUF309: Domain of unk 50.1 71 0.0015 20.9 5.5 48 216-263 9-61 (62)
448 PF04090 RNA_pol_I_TF: RNA pol 48.3 1.7E+02 0.0038 24.9 8.8 65 39-104 42-107 (199)
449 PF12968 DUF3856: Domain of Un 48.0 1.2E+02 0.0027 23.1 7.8 94 48-162 19-127 (144)
450 PRK06645 DNA polymerase III su 47.6 3.2E+02 0.0069 27.7 13.3 21 148-168 270-290 (507)
451 KOG1114 Tripeptidyl peptidase 47.3 4.1E+02 0.0089 28.9 14.4 64 204-268 1229-1293(1304)
452 KOG0530 Protein farnesyltransf 46.6 2.2E+02 0.0047 25.5 13.7 138 469-609 44-183 (318)
453 PF13929 mRNA_stabil: mRNA sta 46.5 2.3E+02 0.005 25.8 18.9 65 271-335 197-263 (292)
454 cd08819 CARD_MDA5_2 Caspase ac 45.3 1.1E+02 0.0024 21.8 7.1 36 288-327 48-83 (88)
455 COG4259 Uncharacterized protei 45.3 1.2E+02 0.0026 22.1 7.0 52 523-576 57-108 (121)
456 PF11848 DUF3368: Domain of un 44.4 74 0.0016 19.5 4.5 34 145-178 12-45 (48)
457 PF04910 Tcf25: Transcriptiona 44.2 3E+02 0.0064 26.4 21.8 57 405-461 110-167 (360)
458 PF08311 Mad3_BUB1_I: Mad3/BUB 44.0 1.5E+02 0.0033 23.0 10.2 42 521-562 81-123 (126)
459 TIGR02508 type_III_yscG type I 43.8 1.3E+02 0.0028 22.1 9.3 17 215-231 48-64 (115)
460 KOG4567 GTPase-activating prot 43.7 1.6E+02 0.0035 26.9 7.7 44 488-531 263-306 (370)
461 PRK14962 DNA polymerase III su 43.6 3.5E+02 0.0077 27.1 16.4 22 147-168 255-276 (472)
462 cd08819 CARD_MDA5_2 Caspase ac 43.6 1.2E+02 0.0026 21.6 7.1 64 296-364 22-85 (88)
463 KOG0687 26S proteasome regulat 42.7 2.8E+02 0.0061 25.7 14.6 95 504-600 105-208 (393)
464 PRK13184 pknD serine/threonine 41.9 5.3E+02 0.011 28.6 28.6 60 471-530 807-867 (932)
465 KOG4279 Serine/threonine prote 41.3 4.5E+02 0.0098 27.7 14.2 190 416-612 181-403 (1226)
466 KOG0686 COP9 signalosome, subu 41.2 3.4E+02 0.0073 26.2 15.5 62 278-339 152-216 (466)
467 PF11838 ERAP1_C: ERAP1-like C 40.7 3.1E+02 0.0067 25.6 19.8 147 449-600 146-302 (324)
468 PF11663 Toxin_YhaV: Toxin wit 40.4 39 0.00084 26.3 3.2 32 110-143 105-136 (140)
469 PF04762 IKI3: IKI3 family; I 40.3 5.7E+02 0.012 28.5 18.1 20 351-370 700-719 (928)
470 KOG1497 COP9 signalosome, subu 39.8 3.1E+02 0.0067 25.4 15.9 57 508-564 108-170 (399)
471 PF10366 Vps39_1: Vacuolar sor 39.6 70 0.0015 24.0 4.5 49 576-624 42-95 (108)
472 COG5159 RPN6 26S proteasome re 39.2 3E+02 0.0064 25.0 18.5 204 315-532 8-235 (421)
473 KOG2063 Vacuolar assembly/sort 39.2 5.5E+02 0.012 28.1 20.4 28 172-199 506-533 (877)
474 PRK13341 recombination factor 39.2 5.2E+02 0.011 27.8 17.6 22 147-168 270-291 (725)
475 KOG0128 RNA-binding protein SA 39.1 5.1E+02 0.011 27.7 38.0 135 133-271 111-261 (881)
476 COG4941 Predicted RNA polymera 39.1 3.3E+02 0.0071 25.5 12.6 114 485-601 273-393 (415)
477 cd02679 MIT_spastin MIT: domai 38.7 96 0.0021 21.6 4.6 45 550-601 20-67 (79)
478 PF02607 B12-binding_2: B12 bi 38.5 55 0.0012 22.6 3.7 37 549-585 12-48 (79)
479 COG5108 RPO41 Mitochondrial DN 37.9 3E+02 0.0065 28.4 9.4 73 438-513 33-113 (1117)
480 KOG1839 Uncharacterized protei 37.6 5.5E+02 0.012 29.2 12.0 129 467-595 972-1121(1236)
481 COG2137 OraA Uncharacterized p 37.5 2.4E+02 0.0052 23.5 11.7 97 487-587 54-151 (174)
482 KOG4567 GTPase-activating prot 37.3 3.4E+02 0.0073 25.0 9.1 44 155-198 263-306 (370)
483 cd07153 Fur_like Ferric uptake 36.6 97 0.0021 23.5 5.1 49 140-188 5-53 (116)
484 COG5159 RPN6 26S proteasome re 36.3 3.3E+02 0.0072 24.7 23.1 98 350-461 130-234 (421)
485 PRK13342 recombination factor 36.2 4.3E+02 0.0093 26.0 18.5 24 447-470 244-267 (413)
486 PRK10564 maltose regulon perip 36.2 72 0.0016 29.0 4.7 41 133-173 254-295 (303)
487 PRK10564 maltose regulon perip 35.5 96 0.0021 28.3 5.3 31 312-342 259-289 (303)
488 PRK11639 zinc uptake transcrip 34.8 2.6E+02 0.0057 23.1 7.7 61 127-188 18-78 (169)
489 PRK11639 zinc uptake transcrip 34.8 2.3E+02 0.0051 23.4 7.3 54 306-359 21-74 (169)
490 KOG2582 COP9 signalosome, subu 34.0 4.2E+02 0.009 25.1 15.4 20 286-305 193-212 (422)
491 PHA02875 ankyrin repeat protei 33.9 4.6E+02 0.01 25.6 12.2 16 284-299 140-155 (413)
492 PF01475 FUR: Ferric uptake re 33.8 90 0.0019 23.9 4.5 51 138-188 10-60 (120)
493 PF09797 NatB_MDM20: N-acetylt 33.8 4.4E+02 0.0095 25.3 21.8 49 224-273 201-249 (365)
494 PF10475 DUF2450: Protein of u 33.6 3.9E+02 0.0084 24.7 9.8 112 247-368 104-220 (291)
495 PRK09857 putative transposase; 33.6 3.9E+02 0.0084 24.7 10.1 64 543-607 211-274 (292)
496 KOG4521 Nuclear pore complex, 32.3 7.8E+02 0.017 27.8 14.0 132 278-421 985-1125(1480)
497 PF00244 14-3-3: 14-3-3 protei 32.2 3.6E+02 0.0078 23.9 10.9 157 38-198 1-197 (236)
498 PRK09857 putative transposase; 32.1 4.1E+02 0.0089 24.5 9.1 65 279-343 209-273 (292)
499 TIGR03362 VI_chp_7 type VI sec 32.1 4.2E+02 0.0091 24.6 16.4 106 7-115 54-178 (301)
500 COG2812 DnaX DNA polymerase II 31.4 5.7E+02 0.012 26.0 11.1 99 18-133 180-278 (515)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-71 Score=584.80 Aligned_cols=598 Identities=20% Similarity=0.295 Sum_probs=523.9
Q ss_pred CHHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 038112 4 SAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAY 83 (625)
Q Consensus 4 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (625)
+++.+.+.+.+.|++++|..+|+... ..|.+++..++..++.++.+.+.++.|..++..+.+.++.++..+++.++..|
T Consensus 53 ~~n~~i~~l~~~g~~~~A~~l~~~m~-~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~ 131 (857)
T PLN03077 53 DSNSQLRALCSHGQLEQALKLLESMQ-ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMF 131 (857)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHH-hcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Confidence 34677889999999999999999854 45778899999999999999999999999999999999888889999999999
Q ss_pred HccCCchHHHHHHHHhHHh----hCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHH
Q 038112 84 GKNSMPDKALDVFQRMNEI----FGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFD 159 (625)
Q Consensus 84 ~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 159 (625)
.+.|+.+.|+.+|+.+++. +......|.+.|++++|..+|++|...|+.||..+|+.++.+|.+.+++..+.+++.
T Consensus 132 ~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~ 211 (857)
T PLN03077 132 VRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211 (857)
T ss_pred HhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHH
Confidence 9999999999999999653 222233389999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 038112 160 EMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREK 239 (625)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 239 (625)
.+.+.|+.||..+++.++.+|++.|+++.|..+|+.|. .||..+|+.++.+|++.|++++|+++|++|...|+.|
T Consensus 212 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999984 4788999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 038112 240 DSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRG 319 (625)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 319 (625)
|..+|+.++.+|.+.|+.+.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|+.|.. ++..+|+.++.+
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~ 363 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISG 363 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999875 488899999999
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----------------CCchHHH
Q 038112 320 LLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG-----------------EGRLADA 382 (625)
Q Consensus 320 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------------~~~~~~a 382 (625)
|.+.|++++|+++|++|...|+.||..|+..++.+|++.|+++.|.++++.+.+.+ .++.++|
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999776654 4566667
Q ss_pred HHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 038112 383 ASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEK 462 (625)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 462 (625)
..+++.|.. ++..+|+.++.+|.+.|+.++|..+|++|.. +..||..+|+.++.+|++.|..+.+.+++..+.+.
T Consensus 444 ~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~ 518 (857)
T PLN03077 444 LEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT 518 (857)
T ss_pred HHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh
Confidence 777766653 3556777777777777777777777777764 46677777777777777777777777777777777
Q ss_pred CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 038112 463 GWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYN 542 (625)
Q Consensus 463 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 542 (625)
|+.++..+++.++.+|++.|++++|.++|+.+ .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+
T Consensus 519 g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 593 (857)
T PLN03077 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593 (857)
T ss_pred CCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Confidence 77777777777777777777777777777765 4678888888888888888888888888888888888888888
Q ss_pred HHHHHHHccCChhHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038112 543 TLMDGLFKTGDCDKALEIWNHIL-EERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNN 621 (625)
Q Consensus 543 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 621 (625)
.++.+|.+.|++++|.++|+.|. +.|+.|+..+|..++++|.+.|++++|.+++++| .+.||..+|++|+.+|...
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~ 670 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIH 670 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHc
Confidence 88888888888888888888888 5688888888888888888888888888888888 3778888888888888776
Q ss_pred CC
Q 038112 622 GA 623 (625)
Q Consensus 622 g~ 623 (625)
|+
T Consensus 671 ~~ 672 (857)
T PLN03077 671 RH 672 (857)
T ss_pred CC
Confidence 65
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.5e-68 Score=561.18 Aligned_cols=569 Identities=19% Similarity=0.240 Sum_probs=521.4
Q ss_pred CCHHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 038112 3 ISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQA 82 (625)
Q Consensus 3 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (625)
++++.+...+.+.|++++|+.+|+.+.. .|..|+..+|..++.++...++...+.+++..+.+.+..++..+++.++.+
T Consensus 153 ~~~n~li~~~~~~g~~~~A~~~f~~M~~-~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~ 231 (857)
T PLN03077 153 FSWNVLVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231 (857)
T ss_pred eEHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHH
Confidence 4667788888888888888888887543 477888888888888888888888888888888888888888899999999
Q ss_pred HHccCCchHHHHHHHHhHHhhC----CCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHH
Q 038112 83 YGKNSMPDKALDVFQRMNEIFG----CEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVF 158 (625)
Q Consensus 83 ~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 158 (625)
|.+.|++++|..+|+.++.... .....|++.|++++|..+|++|...|+.||..+|+.++.+|.+.|+.+.|.+++
T Consensus 232 y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~ 311 (857)
T PLN03077 232 YVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH 311 (857)
T ss_pred HhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Confidence 9999999999999999965322 222338899999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 038112 159 DEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNERE 238 (625)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 238 (625)
..|.+.|+.||..+|+.++.+|++.|++++|.++|+.|. .||..+|+.++.+|.+.|++++|+++|++|.+.++.
T Consensus 312 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 386 (857)
T PLN03077 312 GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386 (857)
T ss_pred HHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999884 478899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 038112 239 KDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIR 318 (625)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 318 (625)
||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+|.+.|++++|.++|+.|.. ++..+|+.++.
T Consensus 387 Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~ 463 (857)
T PLN03077 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIA 463 (857)
T ss_pred CCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999875 37789999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccH
Q 038112 319 GLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNA 398 (625)
Q Consensus 319 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 398 (625)
+|.+.|+.++|+.+|++|.. ++.||..|+..++.+|.+.|..+.+.+++. .+.+.|..++.
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~------------------~~~~~g~~~~~ 524 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHA------------------HVLRTGIGFDG 524 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHH------------------HHHHhCCCccc
Confidence 99999999999999999986 589999999999999999999999999988 78889999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038112 399 YTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGL 478 (625)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 478 (625)
.+++.++.+|.+.|++++|.++|+.+ .||..+|+.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 99999999999999999999999987 4799999999999999999999999999999999999999999999999
Q ss_pred hccCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHH
Q 038112 479 CQSKKIDMALKLCCQFL-QKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKA 557 (625)
Q Consensus 479 ~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 557 (625)
.+.|.+++|.++|+.|. +.|+.|+..+|+.++.+|.+.|++++|.+++++|. +.||..+|..|+.+|...|+.+.+
T Consensus 600 ~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred hhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHH
Confidence 99999999999999999 67999999999999999999999999999999984 689999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHH
Q 038112 558 LEIWNHILEERLRPDI-ISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTI 609 (625)
Q Consensus 558 ~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (625)
....+++.+ +.|+. ..|..+...|...|+|++|.++.+.|.+.|+++++.
T Consensus 677 e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 677 ELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred HHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCC
Confidence 999999998 78854 666777789999999999999999999999988763
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-65 Score=525.55 Aligned_cols=523 Identities=21% Similarity=0.315 Sum_probs=476.1
Q ss_pred CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhc
Q 038112 35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCY-CPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRK 113 (625)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 113 (625)
+.+...+..+...+.+.|++++|.++|+.|.+.+.. ++...+..++..|.+.|.+++|..+|+.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M-------------- 432 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI-------------- 432 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc--------------
Confidence 445666677777777888888888888888887743 34445566777788888888887777766
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHH
Q 038112 114 RQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIW 193 (625)
Q Consensus 114 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 193 (625)
. .|+..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|
T Consensus 433 -------------~----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf 495 (1060)
T PLN03218 433 -------------R----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495 (1060)
T ss_pred -------------C----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 1 38999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--CC
Q 038112 194 ERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVE--SG 271 (625)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~ 271 (625)
+.|.+.+ ..||..+|+.+|.+|++.|++++|.++|++|...++.||..+|+.++.+|++.|++++|.++|++|.. .+
T Consensus 496 ~eM~~~G-v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g 574 (1060)
T PLN03218 496 HEMVNAG-VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP 574 (1060)
T ss_pred HHHHHcC-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC
Confidence 9999876 88999999999999999999999999999999999999999999999999999999999999999986 57
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 038112 272 IFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGV 350 (625)
Q Consensus 272 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 350 (625)
+.||..+|+.++.+|++.|++++|.++|+.|.+.+. ++..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 575 i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyns 654 (1060)
T PLN03218 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654 (1060)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 899999999999999999999999999999999885 4899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038112 351 LINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCS 430 (625)
Q Consensus 351 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 430 (625)
++.+|++.|++++|.++++ .|.+.|+.|+..+|+.++.+|++.|++++|.++|++|...++.
T Consensus 655 LI~a~~k~G~~eeA~~l~~------------------eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 655 LVDVAGHAGDLDKAFEILQ------------------DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHH------------------HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999998 7888899999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038112 431 PTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILI 510 (625)
Q Consensus 431 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 510 (625)
||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|+++.|.+++.+|.+.|+.||..+|+.++
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLI 796 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHc----C-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 038112 511 HGLCS----A-------------------GKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEE 567 (625)
Q Consensus 511 ~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 567 (625)
..|.+ . +..+.|..+|++|.+.|+.||..+|+.++.++.+.+..+.+..+++.+...
T Consensus 797 glc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~ 876 (1060)
T PLN03218 797 GLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS 876 (1060)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC
Confidence 65432 1 224679999999999999999999999998888999999999999998888
Q ss_pred CCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHH
Q 038112 568 RLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTI 609 (625)
Q Consensus 568 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (625)
+..|+..+|+.+++++.+. .++|..++++|.+.|+.|+..
T Consensus 877 ~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 877 ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 8888999999999998432 468999999999999999875
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-63 Score=510.83 Aligned_cols=488 Identities=18% Similarity=0.280 Sum_probs=462.4
Q ss_pred hhhcCChHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhH
Q 038112 110 LCRKRQFEKAKRFLNSLWEKGL-KPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMR 188 (625)
Q Consensus 110 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 188 (625)
+++.|++++|.++|++|...++ +++...++.++..|.+.|..++|..+|+.|.. |+..+|+.++.+|++.|+++.
T Consensus 380 l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~ 455 (1060)
T PLN03218 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDG 455 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHH
Confidence 5677899999999999988875 56788888999999999999999999999874 799999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112 189 AKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMV 268 (625)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 268 (625)
|.++|+.|.+.+ ..||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 456 A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~ 534 (1060)
T PLN03218 456 ALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534 (1060)
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999877 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C-CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Q 038112 269 ESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRK--G-CLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADS 345 (625)
Q Consensus 269 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 345 (625)
+.|+.||..+|+.++.+|++.|++++|.++|++|... + .++..+|+.++.+|++.|++++|.++|+.|.+.++.|+.
T Consensus 535 ~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~ 614 (1060)
T PLN03218 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP 614 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCh
Confidence 9999999999999999999999999999999999863 2 458999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112 346 TTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMS 425 (625)
Q Consensus 346 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 425 (625)
.+|+.++.+|++.|++++|..+|+ .|...|+.||..+|+.++.+|.+.|++++|.++|+.|.
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~------------------eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYD------------------DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHH------------------HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999999999999999 78889999999999999999999999999999999999
Q ss_pred hCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH
Q 038112 426 RKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTM 505 (625)
Q Consensus 426 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 505 (625)
+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----c-------------------CChhHHHHHHH
Q 038112 506 YNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK----T-------------------GDCDKALEIWN 562 (625)
Q Consensus 506 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~ 562 (625)
|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ . +..++|..+|+
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYR 836 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHH
Confidence 999999999999999999999999999999999999999876542 1 22467999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 038112 563 HILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMN 620 (625)
Q Consensus 563 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 620 (625)
+|.+.|+.||..+|..++.++++.+..+.+.++++.|...+..|+..+|++++.++++
T Consensus 837 eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~ 894 (1060)
T PLN03218 837 ETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE 894 (1060)
T ss_pred HHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc
Confidence 9999999999999999998888999999999999999888888999999999999864
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-59 Score=482.11 Aligned_cols=460 Identities=17% Similarity=0.292 Sum_probs=431.0
Q ss_pred hcCChHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHH
Q 038112 112 RKRQFEKAKRFLNSLWEK-GLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAK 190 (625)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 190 (625)
+.|++++|..+|+.|... +..||..+|+.++.+|.+.++.+.+.+++..|.+.|+.||..+|+.++.+|.+.|+++.|.
T Consensus 99 ~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 178 (697)
T PLN03081 99 ACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178 (697)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHH
Confidence 333444444444444443 3578999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038112 191 EIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVES 270 (625)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 270 (625)
++|+.|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|..++.++...|..+.+.+++..+.+.
T Consensus 179 ~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~ 253 (697)
T PLN03081 179 RLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT 253 (697)
T ss_pred HHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 9999984 47999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 038112 271 GIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGV 350 (625)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 350 (625)
|+.||..+++.++.+|++.|++++|.++|+.|.. ++..+|+.++.+|.+.|++++|.++|++|.+.|+.||..||+.
T Consensus 254 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ 330 (697)
T PLN03081 254 GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330 (697)
T ss_pred CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 9999999999999999999999999999999865 4899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038112 351 LINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCS 430 (625)
Q Consensus 351 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 430 (625)
++.+|++.|+++.|.+++. .+.+.|+.|+..+++.++.+|++.|++++|.++|++|.+
T Consensus 331 ll~a~~~~g~~~~a~~i~~------------------~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---- 388 (697)
T PLN03081 331 MIRIFSRLALLEHAKQAHA------------------GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---- 388 (697)
T ss_pred HHHHHHhccchHHHHHHHH------------------HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----
Confidence 9999999999999999998 788899999999999999999999999999999999964
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh-CCCCCCHHHHHHH
Q 038112 431 PTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQ-KGFTPDVTMYNIL 509 (625)
Q Consensus 431 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l 509 (625)
||..+|+.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.+
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 699999999999999999999999999999999999999999999999999999999999999986 6899999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCC
Q 038112 510 IHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD-IISYNITLKGLCSCSR 588 (625)
Q Consensus 510 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 588 (625)
+.+|++.|++++|.++++++ ++.|+..+|+.|+.+|...|+++.|..+++++.+ +.|+ ..+|..++..|.+.|+
T Consensus 469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCC
Confidence 99999999999999998876 4789999999999999999999999999999987 7774 5799999999999999
Q ss_pred hHHHHHHHHHHHHCCCCC
Q 038112 589 MSDAFEFLNDALCRGILP 606 (625)
Q Consensus 589 ~~~A~~~~~~~~~~~~~~ 606 (625)
+++|.++++.|.+.|+.+
T Consensus 544 ~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 544 QAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHHHHHHHcCCcc
Confidence 999999999999998753
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.8e-57 Score=461.62 Aligned_cols=509 Identities=20% Similarity=0.295 Sum_probs=441.9
Q ss_pred CHHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 038112 4 SAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAY 83 (625)
Q Consensus 4 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (625)
++..+...+...|++++|+.+|+++....+..++..+|..++.++.+.++++.|.+++..+.+.+..++..+++.++.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 55667778888999999999999877665667889999999999999999999999999999999888999999999999
Q ss_pred HccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112 84 GKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFE 163 (625)
Q Consensus 84 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 163 (625)
.+.|+++.|.++|+.++ .||..+|+.++.+|.+.|++++|.++|++|.+
T Consensus 169 ~k~g~~~~A~~lf~~m~-------------------------------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~ 217 (697)
T PLN03081 169 VKCGMLIDARRLFDEMP-------------------------------ERNLASWGTIIGGLVDAGNYREAFALFREMWE 217 (697)
T ss_pred hcCCCHHHHHHHHhcCC-------------------------------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999998872 37889999999999999999999999999999
Q ss_pred CCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhh
Q 038112 164 RGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFT 243 (625)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 243 (625)
.|+.|+..+|..++.++...|..+.+.+++..+.+.+ ..||..+++.++.+|++.|++++|.++|++|. ++|..+
T Consensus 218 ~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt 292 (697)
T PLN03081 218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG-VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVA 292 (697)
T ss_pred hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC-CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhH
Confidence 9999999999999999999999999999999888877 88999999999999999999999999999996 578899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHh
Q 038112 244 YCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIRGLLE 322 (625)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 322 (625)
|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..+.+.+.. +..+++.|+.+|++
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988854 88999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHH
Q 038112 323 NGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCN 402 (625)
Q Consensus 323 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 402 (625)
.|++++|.++|++|.+ ||..+|+.++.+|++.|+.++|.++|+ +|...|+.||..+|+
T Consensus 373 ~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~------------------~M~~~g~~Pd~~T~~ 430 (697)
T PLN03081 373 WGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFE------------------RMIAEGVAPNHVTFL 430 (697)
T ss_pred CCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHH------------------HHHHhCCCCCHHHHH
Confidence 9999999999998864 588899999999999999999999998 788889999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcc
Q 038112 403 SLMNGFIQASKLENAIFLFKEMSR-KGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQS 481 (625)
Q Consensus 403 ~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 481 (625)
.++.+|.+.|..++|.++|+.|.+ .++.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.++.+|...
T Consensus 431 ~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~ 507 (697)
T PLN03081 431 AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIH 507 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999975 588999999999999999999999999998765 4689999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHH---HHH----cc--
Q 038112 482 KKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN-LVTYNTLMD---GLF----KT-- 551 (625)
Q Consensus 482 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~---~~~----~~-- 551 (625)
|+++.|..+++++.+.+ +.+..+|..++..|++.|++++|.++++.|.+.|+... ..+|..+.. .+. .+
T Consensus 508 g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~ 586 (697)
T PLN03081 508 KNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQ 586 (697)
T ss_pred CCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCcc
Confidence 99999999999887653 33567899999999999999999999999999887533 222211100 000 01
Q ss_pred --CChhHHHHHHHHHHHcCCCCCHH
Q 038112 552 --GDCDKALEIWNHILEERLRPDII 574 (625)
Q Consensus 552 --g~~~~A~~~~~~~~~~~~~p~~~ 574 (625)
.-++...++..+|.+.|..||..
T Consensus 587 ~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 587 SREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 11344556677777788888643
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.2e-39 Score=353.28 Aligned_cols=597 Identities=15% Similarity=0.082 Sum_probs=397.2
Q ss_pred HHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC
Q 038112 8 LLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS 87 (625)
Q Consensus 8 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (625)
++.++...|++++|...++.+.+.. |.++..+...+..+...|++++|...++.+++.++. ....+..++..+...|
T Consensus 233 ~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g 309 (899)
T TIGR02917 233 LATILIEAGEFEEAEKHADALLKKA--PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLG 309 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcC
Confidence 4455555566666666665555444 444444444444445555555555555555554422 2233334444455555
Q ss_pred CchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHH
Q 038112 88 MPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDE 160 (625)
Q Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 160 (625)
++++|...|+++.+..|..+.+ +.+.|++++|...++++...+ +.+...+..+...+.+.|++++|...|++
T Consensus 310 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 388 (899)
T TIGR02917 310 NLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAK 388 (899)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555555555554444433322 334444444444444444432 23344444444444444444444444444
Q ss_pred HHhCCCCCCchhhH----------------------------------HHHHHHHhcCChhHHHHHHHHHHhCCCCCCCc
Q 038112 161 MFERGVETNVVCYN----------------------------------ILIDGFFKKGDYMRAKEIWERLVMETSVYPNV 206 (625)
Q Consensus 161 ~~~~~~~~~~~~~~----------------------------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 206 (625)
+.+..+ .+...+. .++..+.+.|++++|..+++.+... .+++.
T Consensus 389 ~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~ 465 (899)
T TIGR02917 389 ATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK--QPDNA 465 (899)
T ss_pred HHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCc
Confidence 443321 1223333 3444444555555555555555443 23445
Q ss_pred chHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 038112 207 VTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGF 286 (625)
Q Consensus 207 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (625)
.++..++..+...|++++|.+.|+++.+..+ .+...+..++..+...|++++|.+.++++....+ .+..++..+...+
T Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 543 (899)
T TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLY 543 (899)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHH
Confidence 5666666666667777777777766665432 3444555666666667777777777777666542 2556666667777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 038112 287 CRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQ 366 (625)
Q Consensus 287 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 366 (625)
.+.|++++|..+++.+....+.+...+..++..+...|++++|..+++.+.... +.+...+..++..+...|++++|..
T Consensus 544 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 622 (899)
T TIGR02917 544 LRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVS 622 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777777766666666677777777777777777777777776653 2356667777777777777777777
Q ss_pred HHHHHHhcC----------------CCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038112 367 ILNEVEEGG----------------EGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCS 430 (625)
Q Consensus 367 ~~~~~~~~~----------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 430 (625)
.++++.... .++.++|...+..+.... +.+...+..++..+...|++++|..+++.+.+.. +
T Consensus 623 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 700 (899)
T TIGR02917 623 SFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-P 700 (899)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 777765443 455666777777766553 3356777888888888888888888888887764 3
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038112 431 PTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILI 510 (625)
Q Consensus 431 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 510 (625)
.+...+..+...+...|++++|...++++... .|+..++..++..+.+.|++++|.+.++++.+.. +.+...+..++
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la 777 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALA 777 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 36667778888888899999999999998875 4555777788888999999999999999988864 55788888999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCCh
Q 038112 511 HGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGLCSCSRM 589 (625)
Q Consensus 511 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 589 (625)
..|...|++++|..+|+++.+.+ +++..+++.++..+...|+ .+|+.+++++.+ ..| ++.++..++.++.+.|++
T Consensus 778 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~ 853 (899)
T TIGR02917 778 ELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEA 853 (899)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCH
Confidence 99999999999999999999873 6678889999999999999 889999999998 556 456777888899999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCC
Q 038112 590 SDAFEFLNDALCRGILPTTITWHILVRAVMNNGAS 624 (625)
Q Consensus 590 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 624 (625)
++|.++++++++.+. .++.++..+..++.+.|+.
T Consensus 854 ~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~ 887 (899)
T TIGR02917 854 DRALPLLRKAVNIAP-EAAAIRYHLALALLATGRK 887 (899)
T ss_pred HHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCH
Confidence 999999999998653 3788999999999998864
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.9e-39 Score=348.03 Aligned_cols=598 Identities=13% Similarity=0.072 Sum_probs=326.4
Q ss_pred HHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC
Q 038112 8 LLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS 87 (625)
Q Consensus 8 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (625)
++.++..+|++++|+..++.++... |.++.++..++..+...|++++|...|+.++..+| .+..++..++..+...|
T Consensus 165 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~g 241 (899)
T TIGR02917 165 LAQLALAENRFDEARALIDEVLTAD--PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRP-NNPAVLLALATILIEAG 241 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcC
Confidence 3344444444444444444444433 44444444444444455555555555555544432 24444444444555555
Q ss_pred CchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHH
Q 038112 88 MPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDE 160 (625)
Q Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 160 (625)
++++|...++.+.+..|..+.. +...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++
T Consensus 242 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 320 (899)
T TIGR02917 242 EFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA-PEYLPALLLAGASEYQLGNLEQAYQYLNQ 320 (899)
T ss_pred CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555555444433333222 233444555555554444433 11122222333333444444444444444
Q ss_pred HHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 038112 161 MFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKD 240 (625)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 240 (625)
+.+.. +.+...+..++..+...|++++|...+..+.... +.+...+..++..+.+.|++++|.+.|+++....+ .+
T Consensus 321 ~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~ 396 (899)
T TIGR02917 321 ILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-EN 396 (899)
T ss_pred HHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CC
Confidence 44432 1233333444444444444444444444444331 22333444444444444555555554444443321 12
Q ss_pred hhhHHHHH----------------------------------HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 038112 241 SFTYCSFI----------------------------------HGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGF 286 (625)
Q Consensus 241 ~~~~~~l~----------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (625)
...+..+. ..+...|++++|..+++.+.... +.+..++..++.++
T Consensus 397 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 475 (899)
T TIGR02917 397 AAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIY 475 (899)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHH
Confidence 33333333 34444444444444444444332 22445555556666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 038112 287 CRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQ 366 (625)
Q Consensus 287 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 366 (625)
...|++++|.+.|+++....|.+..++..++..+...|++++|.+.++.+....+. +..++..+...+...|++++|..
T Consensus 476 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 554 (899)
T TIGR02917 476 LGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVA 554 (899)
T ss_pred HhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666666555555556666666666666666666666666554322 44555555666666666666666
Q ss_pred HHHHHHhcC----------------CCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038112 367 ILNEVEEGG----------------EGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCS 430 (625)
Q Consensus 367 ~~~~~~~~~----------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 430 (625)
.++++.... .++.++|..+++.+.... +.+...|..++.++...|++++|...|+.+.+..+
T Consensus 555 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 632 (899)
T TIGR02917 555 WLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP- 632 (899)
T ss_pred HHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence 666554332 345555666665555432 33555666666677777777777777776665432
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038112 431 PTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILI 510 (625)
Q Consensus 431 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 510 (625)
.+...+..+..++...|++++|..+++++.+. .+.+..++..++..+...|++++|..+++.+.+.+ +++...+..++
T Consensus 633 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 710 (899)
T TIGR02917 633 DSALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEG 710 (899)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHH
Confidence 24455666666666677777777777766654 23345566666666777777777777777766653 34566666677
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChH
Q 038112 511 HGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMS 590 (625)
Q Consensus 511 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 590 (625)
.++...|++++|...|+++... .|+..++..++.++.+.|++++|.+.++++++. .+.+...+..++..|.+.|+++
T Consensus 711 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~ 787 (899)
T TIGR02917 711 DLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYD 787 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHH
Confidence 7777777777777777777764 344466666777777777777777777777763 1225566777777777778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 038112 591 DAFEFLNDALCRGILPTTITWHILVRAVMNNGA 623 (625)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 623 (625)
+|.++|+++++.. ++++..+..+...+...|+
T Consensus 788 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 788 KAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc
Confidence 8888888777643 3455667777777666654
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.6e-32 Score=292.86 Aligned_cols=575 Identities=13% Similarity=0.054 Sum_probs=415.7
Q ss_pred HHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHH-------------
Q 038112 9 LNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDV------------- 75 (625)
Q Consensus 9 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------- 75 (625)
+++...+++.+.|.+.+++++..+ |.++.++..++..+.+.|+.++|.+.++++.+..|. +...
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~ 111 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPE 111 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCc
Confidence 467778999999999999999888 999999999999999999999999999999999854 4333
Q ss_pred ---HHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch---hh-----hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 038112 76 ---ALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI---LC-----RKRQFEKAKRFLNSLWEKGLKPDVYSYGTVING 144 (625)
Q Consensus 76 ---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~-----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (625)
....++.+.+.|++++|...|+++.+..|..... +. ..|++++|+..|+++.... |.+...+..+...
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~l 190 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALL 190 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 2455668899999999999999998776665543 22 2499999999999999986 6678888899999
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCC--chh-----------------hHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC
Q 038112 145 LVKSGDLLGALAVFDEMFERGVETN--VVC-----------------YNILIDGFFKKGDYMRAKEIWERLVMETSVYPN 205 (625)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~-----------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 205 (625)
+...|+.++|+..++++........ ... +...+..+-.......|...+....... ..|.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~-~dp~ 269 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL-ADPA 269 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc-cCcc
Confidence 9999999999999999876421100 000 1111111111122334444444433221 1122
Q ss_pred cchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHH-----
Q 038112 206 VVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVD-AVTY----- 279 (625)
Q Consensus 206 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~----- 279 (625)
. ........+...|++++|+..|++..+..+ .+...+..+...+.+.|++++|+..|++.++..+... ...+
T Consensus 270 ~-~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 270 F-RARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred h-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 1 112345667788888888888888887654 3677788888888888888888888888887643221 1111
Q ss_pred -------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038112 280 -------NAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLI 352 (625)
Q Consensus 280 -------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 352 (625)
......+.+.|++++|+..|+++....|.+..++..+..++...|++++|++.|+++.+..+. +...+..+.
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~ 426 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLA 426 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 223456678888888888888888888888888888888888888888888888888877433 344555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-------------------------CCCchHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 038112 353 NGLCKNGYLNKAIQILNEVEEG-------------------------GEGRLADAASLVNRMDKHGCKLNAYTCNSLMNG 407 (625)
Q Consensus 353 ~~~~~~~~~~~a~~~~~~~~~~-------------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 407 (625)
..+. .++.++|...++.+... ..++.++|+..+++.....+. ++..+..+...
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~ 504 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQD 504 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 5553 45677777776543211 146677777777777766443 56677788888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHh---------hHHHHHHHH
Q 038112 408 FIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMI---------TYSLLINGL 478 (625)
Q Consensus 408 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~ 478 (625)
|.+.|++++|...++++.+..+. +...+..+...+...++.++|+..++.+......++.. .+......+
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 88999999999999988765322 44444444455667788888888887764432222211 123445667
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHH
Q 038112 479 CQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKAL 558 (625)
Q Consensus 479 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 558 (625)
...|+.++|..+++. .+++...+..++..+.+.|++++|+..|+++.+. -+.+...+..++.++...|++++|+
T Consensus 584 ~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-EPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 788888888888762 2456667778888888999999999999998886 3556888888999999999999999
Q ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHC
Q 038112 559 EIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALCR 602 (625)
Q Consensus 559 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (625)
+.++.+.+ ..| +...+..+..++...|++++|.+++++++..
T Consensus 658 ~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 658 AQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 99998877 555 4466677778888889999999999988764
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4.2e-31 Score=284.67 Aligned_cols=567 Identities=12% Similarity=0.046 Sum_probs=341.9
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHH----------------HHHHHHhhCCCChhHHHHHHHHHHHhcC
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLF----------------HHILRRLIDPKLVVHVSRILELIEIQKC 69 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 69 (625)
..+++++..+|++++|.+.++.+.+.. |.++... ..++..+...|++++|.+.|+.+++.++
T Consensus 66 ~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p 143 (1157)
T PRK11447 66 AARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAP 143 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC
Confidence 345677788889999999988888777 6665543 3445577788899999999988888765
Q ss_pred CCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCCC---------
Q 038112 70 YCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKP--------- 133 (625)
Q Consensus 70 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~--------- 133 (625)
+................|++++|+..++++.+.+|..+.+ +...|++++|+..|+++.......
T Consensus 144 ~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~ 223 (1157)
T PRK11447 144 PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYG 223 (1157)
T ss_pred CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHH
Confidence 4322222122222335688888999998888888877766 667788888888888876532100
Q ss_pred -------CHh---HHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 038112 134 -------DVY---SYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVY 203 (625)
Q Consensus 134 -------~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 203 (625)
+.. .+...+..+-.......|...+.........|... .......+...|++++|+..|++..+.. +
T Consensus 224 ~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~--P 300 (1157)
T PRK11447 224 QIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN--P 300 (1157)
T ss_pred HHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--C
Confidence 000 00000000000011122222232222211111110 1122333444455555555555544432 2
Q ss_pred CCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCh-hhH------------HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038112 204 PNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDS-FTY------------CSFIHGLCKAGNVEGAERVYREMVES 270 (625)
Q Consensus 204 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~ 270 (625)
.+..++..+..++.+.|++++|+..|++..+..+.... ..+ ......+...|++++|+..|+++++.
T Consensus 301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 23344444445555555555555555544433221110 000 01122334445555555555555444
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH----------------------------------
Q 038112 271 GIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNIL---------------------------------- 316 (625)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l---------------------------------- 316 (625)
.+ .+...+..+..++...|++++|++.|+++.+..|.+..++..+
T Consensus 381 ~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l 459 (1157)
T PRK11447 381 DN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSL 459 (1157)
T ss_pred CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 22 1334444444455555555555555555554444444444444
Q ss_pred --------HHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 038112 317 --------IRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNR 388 (625)
Q Consensus 317 --------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~ 388 (625)
...+...|++++|+..|++..+..+. +...+..+...+...|++++|...++ .
T Consensus 460 ~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~------------------~ 520 (1157)
T PRK11447 460 QNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMR------------------R 520 (1157)
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH------------------H
Confidence 44444555555555555555554322 33444445555555555555555555 5
Q ss_pred HhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh---------hHHHHHHHHhccCCHHHHHHHHHHH
Q 038112 389 MDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVV---------SYNTLINGLCKVERFGEAYSFVKEM 459 (625)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~a~~~~~~~ 459 (625)
+.... +.++..+..+...+...++.++|...++.+......++.. .+......+...|+.++|..+++.
T Consensus 521 al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~- 598 (1157)
T PRK11447 521 LAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ- 598 (1157)
T ss_pred HHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-
Confidence 55433 2245555556666788999999999998875432222221 123456678889999999999872
Q ss_pred HHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 038112 460 LEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLV 539 (625)
Q Consensus 460 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 539 (625)
.+.+...+..+...+.+.|++++|+..|+++++.. +.+...+..++.+|...|++++|.+.++.+.+. .+.+..
T Consensus 599 ----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-~p~~~~ 672 (1157)
T PRK11447 599 ----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT-ANDSLN 672 (1157)
T ss_pred ----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCChH
Confidence 34566677888999999999999999999999874 457889999999999999999999999998875 234567
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCC--CC---CHHHHHHHHHHHhhcCChHHHHHHHHHHHH-CCCC
Q 038112 540 TYNTLMDGLFKTGDCDKALEIWNHILEERL--RP---DIISYNITLKGLCSCSRMSDAFEFLNDALC-RGIL 605 (625)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 605 (625)
++..++.++...|++++|.+++++++...- .| +...+..+...+...|++++|+..|++.+. .|+.
T Consensus 673 ~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 673 TQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 788899999999999999999999988321 11 224566778889999999999999999973 3443
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=9.4e-27 Score=238.96 Aligned_cols=566 Identities=12% Similarity=0.026 Sum_probs=387.7
Q ss_pred HHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCc
Q 038112 10 NLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMP 89 (625)
Q Consensus 10 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (625)
..+...|++++|+..|+.+++.+ |.++.++..++..+...|++++|+..++++++..| .+...+..++.. +++
T Consensus 52 ~~~~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~La~i----~~~ 124 (987)
T PRK09782 52 LKAQKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSLAAI----PVE 124 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHh----ccC
Confidence 33445699999999999999988 99999999999999999999999999999999874 455555555333 999
Q ss_pred hHHHHHHHHhHHhhCCCcchh------------hhcCChHHHHHHHHHHHHCCCCCCHhHHHHH-HHHHHhcCChhhHHH
Q 038112 90 DKALDVFQRMNEIFGCEAGIL------------CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTV-INGLVKSGDLLGALA 156 (625)
Q Consensus 90 ~~A~~~~~~~~~~~~~~~~~~------------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~ 156 (625)
++|..+++++....|....++ ..-.++++|.+.++ .......|+..+.... ...|.+.+++++|+.
T Consensus 125 ~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 125 VKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred hhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 999999999999999988882 12456678888777 3333333345544444 889999999999999
Q ss_pred HHHHHHhCCCCCCchhhHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112 157 VFDEMFERGVETNVVCYNILIDGFFK-KGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKN 235 (625)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (625)
.+.++.+.++. +......+...|.. .++ +++..++... ...+...+..++..+.+.|+.++|.++++++...
T Consensus 204 lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~-----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 204 LYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG-----IFTDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh-----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 99999999643 56667778888887 466 7777775531 3457888999999999999999999999998653
Q ss_pred CCC-CChhhHHHH------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 038112 236 ERE-KDSFTYCSF------------------------------IHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMID 284 (625)
Q Consensus 236 ~~~-~~~~~~~~l------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 284 (625)
... |...++..+ +..+.+.++++.++++. ...|.......-..
T Consensus 277 ~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~r~~ 350 (987)
T PRK09782 277 FTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEMLEERYA 350 (987)
T ss_pred ccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHHHHHHh
Confidence 222 333333222 33344455555444331 12333333211112
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-C-CCCChhhHHHHHHHHHhcCC--
Q 038112 285 GFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREK-N-CNADSTTHGVLINGLCKNGY-- 360 (625)
Q Consensus 285 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~-- 360 (625)
.....+...++...+..+.+..+.+......+.......|+.++|.++++..... + ..++......++..|...+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 351 VSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred hccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 2224477888888888888887888888888888999999999999999988873 1 22333344466777776655
Q ss_pred -HHHHHHHH-------------------------HHHHhcC-----------------CCchHHHHHHHHHHhhCCCCcc
Q 038112 361 -LNKAIQIL-------------------------NEVEEGG-----------------EGRLADAASLVNRMDKHGCKLN 397 (625)
Q Consensus 361 -~~~a~~~~-------------------------~~~~~~~-----------------~~~~~~a~~~~~~~~~~~~~~~ 397 (625)
...+..+. ....... .++..+|+..+....... |+
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd 508 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQ--PD 508 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhC--Cc
Confidence 33333221 1111110 123344555444444432 33
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 038112 398 AYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLING 477 (625)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 477 (625)
......+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...+++.++.. ++....+..+...
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~ 585 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQ 585 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence 333333344445777888888887776554 3344445556666777788888888887777653 2222233333334
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHH
Q 038112 478 LCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKA 557 (625)
Q Consensus 478 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 557 (625)
....|++++|...+++.++. .|+...+..++.++.+.|++++|...+++..... +.+...++.++.++...|++++|
T Consensus 586 l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 44558888888888887775 4567777777788888888888888888887752 44577777788888888888888
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCH
Q 038112 558 LEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTT 608 (625)
Q Consensus 558 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 608 (625)
+..++++++ ..| +...+..+..++...|++++|...+++.++ +.|+.
T Consensus 663 i~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~ 710 (987)
T PRK09782 663 REMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQ 710 (987)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCC
Confidence 888888887 566 456777777888888888888888888875 33543
No 12
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-27 Score=228.68 Aligned_cols=555 Identities=15% Similarity=0.109 Sum_probs=414.8
Q ss_pred ChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHH
Q 038112 17 NPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVF 96 (625)
Q Consensus 17 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 96 (625)
+.+.|.+.|..++++. |++...+..-++.....++|..|..+|..++..+|...+++...++.++.+.|+.+.|+..|
T Consensus 145 ~~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred cHHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHH
Confidence 3689999999999988 99999999999999999999999999999999998888889999999999999999999999
Q ss_pred HHhHHhhCCCcchhh----------hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 038112 97 QRMNEIFGCEAGILC----------RKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGV 166 (625)
Q Consensus 97 ~~~~~~~~~~~~~~~----------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 166 (625)
.++.+..|....+++ ....+..+..++......+ +.++.+.+.|...+.-.|++..++.+...++....
T Consensus 223 ~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 223 ERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 999999997777622 2345777888888887776 67889999999999999999999999999987632
Q ss_pred --CCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhh
Q 038112 167 --ETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPN-VVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFT 243 (625)
Q Consensus 167 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 243 (625)
..-...|..++++|...|++++|...|.+..+.. +.+ +..+..+++.+.+.|+.+.+...|+.+.+..+ .+..+
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~et 378 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYET 378 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHH
Confidence 1234568999999999999999999999988764 222 45567788999999999999999999998754 46677
Q ss_pred HHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hcCCCcHHHHH
Q 038112 244 YCSFIHGLCKAG----NVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMG-----RKGCLNVVSYN 314 (625)
Q Consensus 244 ~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 314 (625)
...+...|...+ ..+.|..++.+.++.- +.|...|..+..++....-+.. +..|..+. ...+..+...|
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHH
Confidence 777777777765 4677888888877764 3478888888888766554433 66665544 22335889999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHc---CCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHH
Q 038112 315 ILIRGLLENGKVDEAISIWELLREK---NCNADS------TTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASL 385 (625)
Q Consensus 315 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ 385 (625)
.++..+...|+++.|...|...... ...+|. .+-..+...+-..++++.|.+.+..+.+..++-
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y------- 529 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY------- 529 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh-------
Confidence 9999999999999999999988766 222233 234456667777889999999998665443221
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC-CC
Q 038112 386 VNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEK-GW 464 (625)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~ 464 (625)
...|..++......+...+|...+..+...+ ..++..+..+...+.....+.-|..-|....+. ..
T Consensus 530 ------------Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~ 596 (1018)
T KOG2002|consen 530 ------------IDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTST 596 (1018)
T ss_pred ------------HHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhcc
Confidence 2222333322233456667777777766543 235556666666676666666666655554443 12
Q ss_pred CCCHhhHHHHHHHHh------------ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 038112 465 KPDMITYSLLINGLC------------QSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKR 532 (625)
Q Consensus 465 ~~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 532 (625)
.+|..+...|.+.|. ..+..++|+++|.++++.. +-|...-+.++-+++..|++.+|..+|.+..+.
T Consensus 597 ~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa 675 (1018)
T KOG2002|consen 597 KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA 675 (1018)
T ss_pred CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH
Confidence 345555555555443 2234567778887777764 446677777777888888888888888888776
Q ss_pred CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 533 NCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERL-RPDIISYNITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 533 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
. ..+..+|.+++.+|...|++..|++.|+..++.-. .-+..+...|.+++++.|.+.+|.+.+.....
T Consensus 676 ~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 676 T-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred H-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3 23566777888888888888888888888777422 33667777888888888888888888777765
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=1.4e-24 Score=223.11 Aligned_cols=556 Identities=10% Similarity=0.014 Sum_probs=397.0
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHH---
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQA--- 82 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--- 82 (625)
..|++.+..+|++++|+..++.+++.+ |.+...+..++.. +++++|..+|+++++..| .+.+++..++..
T Consensus 82 ~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P-~n~~~~~~la~~~~~ 154 (987)
T PRK09782 82 LYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI----PVEVKSVTTVEELLAQQK-ACDAVPTLRCRSEVG 154 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh----ccChhHHHHHHHHHHhCC-CChhHHHHHHHHhhc
Confidence 467899999999999999999999988 8777777766443 999999999999999974 578888888876
Q ss_pred -----HHccCCchHHHHHHHHhHHhhCCCc-------chhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh-cC
Q 038112 83 -----YGKNSMPDKALDVFQRMNEIFGCEA-------GILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVK-SG 149 (625)
Q Consensus 83 -----~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 149 (625)
|.+.+...++++ .+.....|... .+|.+.|++++|+..++++.+.+ +.+......+..++.. .+
T Consensus 155 ~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~ 231 (987)
T PRK09782 155 QNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQL 231 (987)
T ss_pred cchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhC
Confidence 766655555555 22222222221 12778999999999999999987 5566667777777777 46
Q ss_pred ChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchH--------------------
Q 038112 150 DLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTY-------------------- 209 (625)
Q Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------------------- 209 (625)
+ +.+..++... ++.++..+..++..+.+.|+.++|.++++.+.....-.|...+|
T Consensus 232 ~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~ 306 (987)
T PRK09782 232 D-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTV 306 (987)
T ss_pred H-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhh
Confidence 6 7777775532 33578889999999999999999999988865442122222221
Q ss_pred ----------HHHHHHHHhcCChhhHHHHHHH-----------------------------HHhCCCCCChhhHHHHHHH
Q 038112 210 ----------NVMINGLCKCGRFDECLEMWDR-----------------------------MKKNEREKDSFTYCSFIHG 250 (625)
Q Consensus 210 ----------~~l~~~~~~~g~~~~a~~~~~~-----------------------------~~~~~~~~~~~~~~~l~~~ 250 (625)
..++..+.+.++++.+.++..- |.+.. +-+......+.-.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~ 385 (987)
T PRK09782 307 QFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQ 385 (987)
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 1224556667777755554321 00000 0122222222233
Q ss_pred HHhcCCHHHHHHHHHHHHHC-C-CCcCHHHHHHHHHHHHhcCC---HHHH-------------------------HHHHH
Q 038112 251 LCKAGNVEGAERVYREMVES-G-IFVDAVTYNAMIDGFCRAGK---IKEC-------------------------FELWE 300 (625)
Q Consensus 251 ~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a-------------------------~~~~~ 300 (625)
..+.|+.++|.++|+..... + -.++......++..|.+.+. ..++ .+.+.
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 45677788888888877662 1 12233444466677766654 2222 22233
Q ss_pred HHHhcCCC--cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 038112 301 VMGRKGCL--NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGR 378 (625)
Q Consensus 301 ~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 378 (625)
......|. +..+|..+..++.. ++.++|+..+.+..... |+......+...+...|++++|...+++
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rk-------- 534 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQK-------- 534 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHH--------
Confidence 33344455 77788888888876 78888888787777663 4444443445555688888888888873
Q ss_pred hHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 038112 379 LADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKE 458 (625)
Q Consensus 379 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 458 (625)
+... +|+...+..+...+.+.|+++.|...+++..+..+. ....+..+.......|++++|...+++
T Consensus 535 ----------a~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 535 ----------ISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred ----------Hhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3332 333445667778889999999999999999886422 233333344444566999999999999
Q ss_pred HHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 038112 459 MLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNL 538 (625)
Q Consensus 459 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 538 (625)
.++. .|+...+..+..++.+.|++++|...+++.+... +.+...++.++.++...|++++|+..+++..+. .|.+.
T Consensus 602 AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~ 677 (987)
T PRK09782 602 SLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDP 677 (987)
T ss_pred HHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCH
Confidence 9985 5678889999999999999999999999999974 446788899999999999999999999999986 35568
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHH
Q 038112 539 VTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI-ISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTI 609 (625)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (625)
..+..++.++...|++++|+..++++++ +.|+. .+.........+..+++.|.+-+++... +.|+..
T Consensus 678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~--~~~~~~ 745 (987)
T PRK09782 678 ALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT--FSFDSS 745 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cCccch
Confidence 8999999999999999999999999999 78865 6666777778888888888888887764 334443
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=2.8e-26 Score=208.62 Aligned_cols=437 Identities=16% Similarity=0.140 Sum_probs=329.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHH
Q 038112 112 RKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKE 191 (625)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 191 (625)
+.|+|++|++.-..+...+ +.+....-.+...+....+.+....--...++.. +.-..+|..+++.+-..|+++.|+.
T Consensus 60 q~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~ 137 (966)
T KOG4626|consen 60 QGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALA 137 (966)
T ss_pred hccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHH
Confidence 3444444444444444433 2222223333344445555555444444444432 3356778888888888888888888
Q ss_pred HHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038112 192 IWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSF-TYCSFIHGLCKAGNVEGAERVYREMVES 270 (625)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 270 (625)
.|+.+++.. +..+..|..+..++...|+.+.|.+.|.+.++.+ |+.. ....+....-..|+.++|...|-+.++.
T Consensus 138 ~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~ 213 (966)
T KOG4626|consen 138 LYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIET 213 (966)
T ss_pred HHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhh
Confidence 888888763 4566778888888888888888888888877553 2222 2233444455578888888888888775
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 038112 271 GIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGV 350 (625)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 350 (625)
.+. -...|..|...+..+|+...|+..|++..+.+|.-..+|..|..+|...+.++.|+..|.+.....+. ....+..
T Consensus 214 qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gN 291 (966)
T KOG4626|consen 214 QPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGN 291 (966)
T ss_pred CCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhccc
Confidence 321 34567788888888888888888888888888888888888888888888899888888888776322 4555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038112 351 LINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCS 430 (625)
Q Consensus 351 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 430 (625)
+...|...|..+.|+..+++.. ... +.-+..|+.+..++...|+..+|.+.|.+.....+.
T Consensus 292 la~iYyeqG~ldlAI~~Ykral------------------~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ 352 (966)
T KOG4626|consen 292 LACIYYEQGLLDLAIDTYKRAL------------------ELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN 352 (966)
T ss_pred eEEEEeccccHHHHHHHHHHHH------------------hcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc
Confidence 7777888888888888888533 221 224567899999999999999999999999887433
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHH
Q 038112 431 PTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPD-MITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPD-VTMYNI 508 (625)
Q Consensus 431 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ 508 (625)
...+.+.+...+...|.+++|..+|....+ +.|. ...++.+...|.+.|++++|+..+++.+. +.|+ ...++.
T Consensus 353 -hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~N 427 (966)
T KOG4626|consen 353 -HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSN 427 (966)
T ss_pred -cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHh
Confidence 566888999999999999999999999988 4555 46788999999999999999999999998 4665 678999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHh
Q 038112 509 LIHGLCSAGKVEDALQLYSNMKKRNCVPN-LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI-ISYNITLKGLC 584 (625)
Q Consensus 509 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 584 (625)
++..|...|+.+.|+..+.+++.. .|. ...++.|+..|...|+..+|++-|+++++ ++||. ..+..++.++.
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 999999999999999999999984 454 77889999999999999999999999999 89976 67777766543
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.1e-23 Score=202.03 Aligned_cols=584 Identities=14% Similarity=0.060 Sum_probs=438.2
Q ss_pred hhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCC--hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHH
Q 038112 18 PHTALALFDSATREPGYAHSPHLFHHILRRLIDPKL--VVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDV 95 (625)
Q Consensus 18 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 95 (625)
+..|...|+.+-+.+ ......+..-...|...|. ++.|...|..+++.+|+ +.-.+..-+......++|..|..+
T Consensus 110 ~~~at~~~~~A~ki~--m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynkkdY~~al~y 186 (1018)
T KOG2002|consen 110 FDKATLLFDLADKID--MYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPD-NILALLGKARIAYNKKDYRGALKY 186 (1018)
T ss_pred HHHHHHHhhHHHHhh--ccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHhccccHHHHHHH
Confidence 456888888876655 4445555554545555554 59999999999998743 544444455556788999999999
Q ss_pred HHHhHHhhCCCcc-h-------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC---ChhhHHHHHHHHHhC
Q 038112 96 FQRMNEIFGCEAG-I-------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSG---DLLGALAVFDEMFER 164 (625)
Q Consensus 96 ~~~~~~~~~~~~~-~-------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~ 164 (625)
|..++...|.... . +.+.|+.+.|+..|+++++.+ |.++.++..|...-.... .+..+...+......
T Consensus 187 yk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~ 265 (1018)
T KOG2002|consen 187 YKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE 265 (1018)
T ss_pred HHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh
Confidence 9998765554322 2 678999999999999999987 455666666555444443 355677777777766
Q ss_pred CCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhh
Q 038112 165 GVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVY-PNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFT 243 (625)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 243 (625)
+ +-++...+.|...|...|++..+..+...+....... --...|.-+.++|-..|++++|..+|.+..+.........
T Consensus 266 n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 266 N-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred c-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 4 3488999999999999999999999998887653111 1123577889999999999999999999887654322445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 038112 244 YCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAG----KIKECFELWEVMGRKGCLNVVSYNILIRG 319 (625)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 319 (625)
+..+.+.+...|+++.+...|+.+.+.. +.+..+...+...|...+ ..+.|..++.......+.+..+|..+...
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 6678899999999999999999999874 336788888888888775 56888889999888888899999999988
Q ss_pred HHhCCCHHHHHHHHHHHH----HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHh-hCCC
Q 038112 320 LLENGKVDEAISIWELLR----EKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMD-KHGC 394 (625)
Q Consensus 320 ~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~ 394 (625)
+-...-+.. +..|..+. ..+-.+.+...+.+...+...|++..|...|......-. ..+. ..+-
T Consensus 424 ~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~----------~~~n~de~~ 492 (1018)
T KOG2002|consen 424 LEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL----------EVANKDEGK 492 (1018)
T ss_pred HHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh----------hhcCccccc
Confidence 876654444 77666544 445557888999999999999999999999986554310 0000 0111
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 038112 395 KLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPT-VVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSL 473 (625)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 473 (625)
.++..+-..+..+.-..++.+.|.+.|..+.+.. |. +..|..++......+...+|...+.+.... ...++..+..
T Consensus 493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl 569 (1018)
T KOG2002|consen 493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSL 569 (1018)
T ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHH
Confidence 2333344556677778899999999999999863 33 335555554444567888999999998875 3446667777
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHc------------CCCHHHHHHHHHHHHhCCCCCCHHH
Q 038112 474 LINGLCQSKKIDMALKLCCQFLQK-GFTPDVTMYNILIHGLCS------------AGKVEDALQLYSNMKKRNCVPNLVT 540 (625)
Q Consensus 474 l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~ 540 (625)
++..+.+...+..|.+-|..+.+. ...+|+.+...|+..|.. .+..++|+.+|.++++. -|.|...
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-dpkN~yA 648 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN-DPKNMYA 648 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-Ccchhhh
Confidence 777888888888888877776653 123577777777776653 34578899999999987 3668888
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 038112 541 YNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALC-RGILPTTITWHILVRAVM 619 (625)
Q Consensus 541 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 619 (625)
-+.++-+++..|++.+|+.+|.++.+.. .-...+|-.++++|..+|++..|+++|+...+ .+-..+..+...|..++.
T Consensus 649 ANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y 727 (1018)
T KOG2002|consen 649 ANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWY 727 (1018)
T ss_pred ccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 8999999999999999999999999953 33567899999999999999999999999875 444567778888888888
Q ss_pred hcCC
Q 038112 620 NNGA 623 (625)
Q Consensus 620 ~~g~ 623 (625)
++|.
T Consensus 728 ~~~~ 731 (1018)
T KOG2002|consen 728 EAGK 731 (1018)
T ss_pred Hhhh
Confidence 7764
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=2.4e-25 Score=202.65 Aligned_cols=465 Identities=16% Similarity=0.092 Sum_probs=279.2
Q ss_pred ccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHH
Q 038112 14 AEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKAL 93 (625)
Q Consensus 14 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 93 (625)
++-+...+-.+.++-... +........++..+.+.|++++|++....+-.++ +.+......+...++...+++...
T Consensus 27 ~~~~s~~s~~v~qq~~~t---~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~ 102 (966)
T KOG4626|consen 27 QSVSSSGSSSVLQQFNKT---HEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSS 102 (966)
T ss_pred cCcccccchHHHHHhccC---CccchhHHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhh
Confidence 333334444444443222 3344446778888889999999999888887776 446666667777888888888776
Q ss_pred HHHHHhHHhhCCC-------cchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 038112 94 DVFQRMNEIFGCE-------AGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGV 166 (625)
Q Consensus 94 ~~~~~~~~~~~~~-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 166 (625)
..-....+..+.. ..++...|++++|+.+++.+++.. +..+..|..+..++...|+.+.|.+.|.+.++.+
T Consensus 103 a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln- 180 (966)
T KOG4626|consen 103 AGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN- 180 (966)
T ss_pred hhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-
Confidence 6555443333322 222445566666666666666554 3345556666666666666666666666665542
Q ss_pred CCCch-hhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHH
Q 038112 167 ETNVV-CYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYC 245 (625)
Q Consensus 167 ~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 245 (625)
|+.. ....+...+...|++++|...|.+.++.. +.-..+|..|.-.+...|+.-.|+..|++..+..+ .-...|.
T Consensus 181 -P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYi 256 (966)
T KOG4626|consen 181 -PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYI 256 (966)
T ss_pred -cchhhhhcchhHHHHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHh
Confidence 2222 22334444445566666666666555542 22334566666666666666666666666554432 1234455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCC
Q 038112 246 SFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGK 325 (625)
Q Consensus 246 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 325 (625)
.|...|...+.++.|+..|.+.+...+ .....+..+...|..+|.++.|+..|++.....|.-+.+|+.|..++...|+
T Consensus 257 NLGnV~ke~~~~d~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~ 335 (966)
T KOG4626|consen 257 NLGNVYKEARIFDRAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGS 335 (966)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccc
Confidence 555666666666666666655554421 1344455555555566666666666666665555555566666666666666
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHH
Q 038112 326 VDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLM 405 (625)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 405 (625)
+.+|...|.+.+...+. .+...+.+.
T Consensus 336 V~ea~~cYnkaL~l~p~------------------------------------------------------hadam~NLg 361 (966)
T KOG4626|consen 336 VTEAVDCYNKALRLCPN------------------------------------------------------HADAMNNLG 361 (966)
T ss_pred hHHHHHHHHHHHHhCCc------------------------------------------------------cHHHHHHHH
Confidence 66666655555544221 233445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHhccCCH
Q 038112 406 NGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPD-MITYSLLINGLCQSKKI 484 (625)
Q Consensus 406 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 484 (625)
..|...|.++.|..+|....+..+. -....+.+...|.+.|++++|+..+++.+. +.|+ ...++.+...|-..|+.
T Consensus 362 ni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhH
Confidence 5566666666666666655543111 233566677777777777777777777776 5565 35677777778888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 038112 485 DMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN-LVTYNTLMDGLF 549 (625)
Q Consensus 485 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 549 (625)
+.|.+.+.+.+..+ +.-...++.|+..|-..|+..+|+.-|+...+ ++|| +..+..++.+..
T Consensus 439 ~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 439 SAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 88888888877753 22356778888888888888888888888887 4555 556666665543
No 17
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.94 E-value=7.8e-21 Score=181.55 Aligned_cols=588 Identities=11% Similarity=0.065 Sum_probs=405.9
Q ss_pred HHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCC
Q 038112 9 LNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSM 88 (625)
Q Consensus 9 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (625)
|+.+..+|++++|..++..+++++ |..+.+|..|+..|-..|+.+.+...+-.+...+|. +.+.|..+.....++|.
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhccc
Confidence 467778899999999999999999 999999999999999999999999999888888754 77999999999999999
Q ss_pred chHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCCCCHhH----HHHHHHHHHhcCChhhHHHH
Q 038112 89 PDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKPDVYS----YGTVINGLVKSGDLLGALAV 157 (625)
Q Consensus 89 ~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~ 157 (625)
++.|+-.|.++.+..|..... |-+.|+...|...|.++.....+.|..- -..+++.+...++.+.|++.
T Consensus 223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999988877665 6778999999999999998863222222 22345566677878999999
Q ss_pred HHHHHhC-CCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCC--------------------------CCCCCcchHH
Q 038112 158 FDEMFER-GVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMET--------------------------SVYPNVVTYN 210 (625)
Q Consensus 158 ~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------------------------~~~~~~~~~~ 210 (625)
++..... +-..+...++.++..+.+...++.+........... ...++..+ -
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 9988873 223456678889999999999999988777665511 01222222 1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 038112 211 VMINGLCKCGRFDECLEMWDRMKKNE--REKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR 288 (625)
Q Consensus 211 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (625)
.++-++.+....+....+...+.+.. +.-++..|..+..++...|.+.+|+.+|..+......-+...|..++++|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 22334444444444444444444444 4456678999999999999999999999999988666678899999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--------CCCCChhhHHHHHHHHHhcCC
Q 038112 289 AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREK--------NCNADSTTHGVLINGLCKNGY 360 (625)
Q Consensus 289 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~ 360 (625)
.|.++.|.+.|..+....|.+..+...|...+.+.|+.++|.+.+..+... ...|+..........+...|+
T Consensus 462 l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999886522 233444444555667777888
Q ss_pred HHHHHHHHHHHHhcC----------------------CCchHHHHHHHHHH-----------------------hhCCCC
Q 038112 361 LNKAIQILNEVEEGG----------------------EGRLADAASLVNRM-----------------------DKHGCK 395 (625)
Q Consensus 361 ~~~a~~~~~~~~~~~----------------------~~~~~~a~~~~~~~-----------------------~~~~~~ 395 (625)
.++=..+...+.... ......-......+ ...+..
T Consensus 542 ~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Ls 621 (895)
T KOG2076|consen 542 REEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLS 621 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCc
Confidence 776544444333211 00011111111111 111111
Q ss_pred ccH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChh----hHHHHHHHHhccCCHHHHHHHHHHHHHC-CC--C
Q 038112 396 LNA--YTCNSLMNGFIQASKLENAIFLFKEMSRKGCS-PTVV----SYNTLINGLCKVERFGEAYSFVKEMLEK-GW--K 465 (625)
Q Consensus 396 ~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~--~ 465 (625)
.+. ..+..++..+++.+++++|..+...+.....- .+.. .-...+.+....+++..|...++.++.. +. .
T Consensus 622 iddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~ 701 (895)
T KOG2076|consen 622 IDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLD 701 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhh
Confidence 111 23455667788888899998888887764211 1111 1234455566788899999988888764 11 1
Q ss_pred CC-HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038112 466 PD-MITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTL 544 (625)
Q Consensus 466 ~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 544 (625)
|. ...|+.......+.++-.--...+..+.......+.......+.....++.+..|+..+-++...+ |.++.+-..+
T Consensus 702 ~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~-pd~Pl~nl~l 780 (895)
T KOG2076|consen 702 VYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQN-PDSPLINLCL 780 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhC-CCCcHHHHHH
Confidence 11 223443444555555443334444444433222223333334455667888999999888887752 3334444444
Q ss_pred HHHHHc----------cCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 545 MDGLFK----------TGDCDKALEIWNHILEERLR-PDIISYNITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 545 ~~~~~~----------~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
+-++.. +-..-++..++.+..+.... -..+++..++++|...|-..-|..+|++.++
T Consensus 781 glafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~ 848 (895)
T KOG2076|consen 781 GLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE 848 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC
Confidence 444432 11234566666666663211 1457889999999999999999999999995
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=1.3e-21 Score=198.56 Aligned_cols=432 Identities=13% Similarity=-0.021 Sum_probs=302.7
Q ss_pred HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112 7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN 86 (625)
Q Consensus 7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (625)
..+..+...|+++.|+..|+.++... | ++..|..++.++.+.|++++|++.+..+++.+ |.+...+..++.+|...
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~--p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECK--P-DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--C-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 56788899999999999999999876 4 47788999999999999999999999999987 45788999999999999
Q ss_pred CCchHHHHHHHHhHHhhCCCcch---hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112 87 SMPDKALDVFQRMNEIFGCEAGI---LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFE 163 (625)
Q Consensus 87 ~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 163 (625)
|++++|+..|..+....+..... .....-...+.......+... +++...+..+.. +...........-+....+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcccc
Confidence 99999999887764432222111 111111123333334444332 223223333322 2222222222222222222
Q ss_pred CCCCCCchhhHHHHHHH---HhcCChhHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 038112 164 RGVETNVVCYNILIDGF---FKKGDYMRAKEIWERLVMETSVYP-NVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREK 239 (625)
Q Consensus 164 ~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 239 (625)
.... ....+..+...+ ...+++++|.+.|+.....+...| ....+..+..++...|++++|+..+++.....+ .
T Consensus 286 ~~~~-~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~ 363 (615)
T TIGR00990 286 LDEE-TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-R 363 (615)
T ss_pred cccc-cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-C
Confidence 1111 111222222211 234789999999999987643333 445688888999999999999999999987653 3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 038112 240 DSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRG 319 (625)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 319 (625)
....|..+...+...|++++|+..|+++++..+ .+..++..+...+...|++++|+..|+......|.+...+..++.+
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT 442 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHH
Confidence 466788889999999999999999999988753 3688999999999999999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccH-
Q 038112 320 LLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNA- 398 (625)
Q Consensus 320 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 398 (625)
+.+.|++++|+..|+......+ .+...+..+...+...|++++|...+++.....+... ....+.
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~-------------~~~~~~~ 508 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK-------------PMYMNVL 508 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc-------------cccccHH
Confidence 9999999999999999988743 2677888899999999999999999996443221100 000011
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 038112 399 YTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEK 462 (625)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 462 (625)
..++..+..+...|++++|..++++.....+ .+...+..+..++.+.|++++|+..|++..+.
T Consensus 509 ~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 509 PLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1122222333445778888888877766532 23345667777777777777777777777653
No 19
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.93 E-value=2.7e-19 Score=164.62 Aligned_cols=573 Identities=14% Similarity=0.065 Sum_probs=364.5
Q ss_pred CChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHH
Q 038112 16 KNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDV 95 (625)
Q Consensus 16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 95 (625)
++...|..++..+.+.+ |.+|..|.+-++.--..|++..|..+...--.. ++.+.++|...++. .-.+.|..+
T Consensus 265 ~DikKaR~llKSvretn--P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeaiRL----hp~d~aK~v 337 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN--PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAIRL----HPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHHhc----CChHHHHHH
Confidence 45678999999988888 889999998888888899999999888877766 46688888776654 467778888
Q ss_pred HHHhHHhhCCCcchhhhcCChHH----HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCch
Q 038112 96 FQRMNEIFGCEAGILCRKRQFEK----AKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVV 171 (625)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 171 (625)
........|..+.++++.-+++. =..++++.++.- |.++..|...+ ...+.+.|.-++.++.+. ++.+..
T Consensus 338 vA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~i-P~sv~LWKaAV----elE~~~darilL~rAvec-cp~s~d 411 (913)
T KOG0495|consen 338 VANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHI-PRSVRLWKAAV----ELEEPEDARILLERAVEC-CPQSMD 411 (913)
T ss_pred HHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhC-CchHHHHHHHH----hccChHHHHHHHHHHHHh-ccchHH
Confidence 88888888888888766655443 345777777763 55666665543 355666688888887776 444444
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHH----HhCCCCCChhhHHHH
Q 038112 172 CYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRM----KKNEREKDSFTYCSF 247 (625)
Q Consensus 172 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l 247 (625)
.|. ++.+..-|+.|..++....+. ++.+...|.+-...--.+|+.+...+++++- ...|+..+...|..=
T Consensus 412 Lwl----AlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e 485 (913)
T KOG0495|consen 412 LWL----ALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE 485 (913)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH
Confidence 444 444556677888888877765 6667777777777777778887777776653 345667777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCC
Q 038112 248 IHGLCKAGNVEGAERVYREMVESGIFVD--AVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGK 325 (625)
Q Consensus 248 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 325 (625)
...|-..|..-.+..+....+..|+.-. ..+|..-...|.+.+.++-|..+|....+..|.....|...+..--..|.
T Consensus 486 Ae~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt 565 (913)
T KOG0495|consen 486 AEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGT 565 (913)
T ss_pred HHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCc
Confidence 7777777777777777777777665432 35667777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----------------CCchHHHHHHHHHH
Q 038112 326 VDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG----------------EGRLADAASLVNRM 389 (625)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~a~~~~~~~ 389 (625)
.+....++.++...-++ ....|......+...|+...|..++..+.... ...++.|..++.+.
T Consensus 566 ~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 566 RESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred HHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 77777777777776332 44445555566667777777777777544322 22233333333333
Q ss_pred hhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 038112 390 DKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTV-VSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM 468 (625)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 468 (625)
.. ..++..+|..-+..-.-.+..++|.+++++..+. -|+- ..|..+.+.+.+.++.+.|...|..-.+. ++...
T Consensus 645 r~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~i 719 (913)
T KOG0495|consen 645 RS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSI 719 (913)
T ss_pred hc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCc
Confidence 22 2334444444444444445555555555555443 1222 24444455555555555555555444432 22333
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038112 469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGL 548 (625)
Q Consensus 469 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (625)
..|..+...-.+.|++-+|..++++..-++ +-+...|...+++-.+.|+.+.|..+..++.+. ++.+...|..-+...
T Consensus 720 pLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le 797 (913)
T KOG0495|consen 720 PLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLE 797 (913)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhc
Confidence 344444444455555555555555555443 234555555555555555555555555555544 444444455444444
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 038112 549 FKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTT-ITWHILVRAVMNNG 622 (625)
Q Consensus 549 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 622 (625)
-+.++-......+++ ..-|+.+...+...+....++++|+++|++.++ +.||. .+|.-+.....++|
T Consensus 798 ~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 798 PRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred cCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhC
Confidence 444443333333322 334666677777778888888888888888885 34654 67777777777777
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=7e-21 Score=193.24 Aligned_cols=91 Identities=14% Similarity=0.072 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHh
Q 038112 139 GTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCK 218 (625)
Q Consensus 139 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (625)
......+.+.|+++.|+..|+++++. .|++..|..+..+|.+.|++++|++.+...++.. +.+..+|..+..++..
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 33444555556666666666655544 2344555555555666666666666665555542 3334455555555666
Q ss_pred cCChhhHHHHHHHHH
Q 038112 219 CGRFDECLEMWDRMK 233 (625)
Q Consensus 219 ~g~~~~a~~~~~~~~ 233 (625)
.|++++|+..|..+.
T Consensus 207 lg~~~eA~~~~~~~~ 221 (615)
T TIGR00990 207 LGKYADALLDLTASC 221 (615)
T ss_pred cCCHHHHHHHHHHHH
Confidence 666666655554443
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=9.2e-22 Score=198.44 Aligned_cols=375 Identities=11% Similarity=0.072 Sum_probs=267.0
Q ss_pred HHHHccCChhHHHHHHHhhccCCC-CCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCC
Q 038112 10 NLLKAEKNPHTALALFDSATREPG-YAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSM 88 (625)
Q Consensus 10 ~~l~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (625)
..+.+|.+|+.-.-+|...-+... ...+......++..+.+.|++.+|..+++.++...+ .+.+.+..++.+....|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~ 91 (656)
T PRK15174 13 TTLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQ 91 (656)
T ss_pred hhhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCC
Confidence 456677788877777776544321 234445556667777788888888888888888764 356666666677777888
Q ss_pred chHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHH
Q 038112 89 PDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEM 161 (625)
Q Consensus 89 ~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 161 (625)
+++|...|+++....|..+.+ +...|++++|+..|++++... |.+...+..++..+...|++++|...++.+
T Consensus 92 ~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 92 PDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 888888888888877777665 667788888888888887764 556677777888888888888888888877
Q ss_pred HhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCh
Q 038112 162 FERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDS 241 (625)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 241 (625)
....+. +...+..+ ..+...|++++|...++.+.+.. ..++...+..++..+...|++++|+..++++....+ .+.
T Consensus 171 ~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~-~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~ 246 (656)
T PRK15174 171 AQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFF-ALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGA 246 (656)
T ss_pred HHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC-CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCH
Confidence 665332 33333333 34677888888888888876653 122333444556677788888888888888877653 356
Q ss_pred hhHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 038112 242 FTYCSFIHGLCKAGNVEG----AERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILI 317 (625)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 317 (625)
..+..+...+...|++++ |...|+++++..+. +...+..+...+...|++++|+..++.+....|.+..++..+.
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 677778888888888775 78888888776433 6677778888888888888888888888888877888888888
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHhhC
Q 038112 318 RGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG----EGRLADAASLVNRMDKH 392 (625)
Q Consensus 318 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~a~~~~~~~~~~ 392 (625)
.++...|++++|+..++.+...++. +...+..+..++...|++++|...+++..+.. ...+.++..-+......
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISA 403 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHh
Confidence 8888888888888888888776432 22333345667788888888888888877664 34455566655555543
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=3.8e-21 Score=193.98 Aligned_cols=327 Identities=12% Similarity=0.094 Sum_probs=276.3
Q ss_pred HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112 7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN 86 (625)
Q Consensus 7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (625)
.++.-+.++|+++.|+..++.++... |.++.++..++.++...|++++|...++.++...| .+...+..++..+...
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHc
Confidence 45566778999999999999988877 88899999999999999999999999999999974 4788899999999999
Q ss_pred CCchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHH
Q 038112 87 SMPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFD 159 (625)
Q Consensus 87 ~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 159 (625)
|++++|+..++++....|..+.+ +...|++++|...++++.... +.+...+..+ ..+...|++++|...++
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 99999999999998888877665 778899999999999887765 3344444444 34788999999999999
Q ss_pred HHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhh----HHHHHHHHHhC
Q 038112 160 EMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDE----CLEMWDRMKKN 235 (625)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~ 235 (625)
.+.+....++...+..++..+...|++++|+..++.+.... +.+...+..+...+...|++++ |...|++....
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 98877544445555666788889999999999999998863 5566778889999999999986 89999999877
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 038112 236 EREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNI 315 (625)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 315 (625)
.+ .+...+..+...+...|++++|+..+++++...+. +...+..+..++.+.|++++|+..++.+....|.+...+..
T Consensus 280 ~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 280 NS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 64 46778889999999999999999999999987543 56778888999999999999999999999888877766666
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 038112 316 LIRGLLENGKVDEAISIWELLREKNCN 342 (625)
Q Consensus 316 l~~~~~~~~~~~~a~~~~~~~~~~~~~ 342 (625)
+..++...|++++|...|+...+..+.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 788899999999999999999887433
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=1.9e-22 Score=194.90 Aligned_cols=303 Identities=14% Similarity=0.082 Sum_probs=227.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcC
Q 038112 283 IDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNAD---STTHGVLINGLCKNG 359 (625)
Q Consensus 283 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~ 359 (625)
...+...|++++|...|+++....|.+..++..++..+...|++++|..+++.+...+..++ ...+..++..|...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 44455667777777777777777776777777777777777777777777777766532221 234566677777788
Q ss_pred CHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hh
Q 038112 360 YLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTV----VS 435 (625)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 435 (625)
+++.|..++++ +... .+.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..
T Consensus 122 ~~~~A~~~~~~------------------~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 182 (389)
T PRK11788 122 LLDRAEELFLQ------------------LVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHF 182 (389)
T ss_pred CHHHHHHHHHH------------------HHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 88888877774 3322 2335667778888888888888888888888775433221 23
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 038112 436 YNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCS 515 (625)
Q Consensus 436 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 515 (625)
+..++..+...|++++|...++++.+.. +.+...+..++..+.+.|++++|.++++++.+.+......++..++.+|..
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 4566777788899999999999988753 334567777888899999999999999998875433234567888899999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh---cCChHHH
Q 038112 516 AGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCS---CSRMSDA 592 (625)
Q Consensus 516 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A 592 (625)
.|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++++ ..|+...+..++..+.. .|+.+++
T Consensus 262 ~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a 337 (389)
T PRK11788 262 LGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKES 337 (389)
T ss_pred cCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhH
Confidence 99999999999998885 46666678889999999999999999999988 67888888877776664 5688999
Q ss_pred HHHHHHHHHCCCCCCHH
Q 038112 593 FEFLNDALCRGILPTTI 609 (625)
Q Consensus 593 ~~~~~~~~~~~~~~~~~ 609 (625)
+.++++|++.++.|++.
T Consensus 338 ~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 338 LLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 99999999877777776
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=8.8e-20 Score=188.44 Aligned_cols=419 Identities=12% Similarity=0.051 Sum_probs=284.6
Q ss_pred CCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHH
Q 038112 168 TNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSF 247 (625)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 247 (625)
.++......+.+....|+.++|+++|...... .+.+...+..+...+...|++++|..++++.....+ .+...+..+
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 89 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGL 89 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 34455555666666777777777777776642 133344566777777777777777777777665543 345556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHH
Q 038112 248 IHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVD 327 (625)
Q Consensus 248 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 327 (625)
+..+...|++++|+..++++++..+. +.. +..+..++...|++++|+..++++....|.+...+..++.++...+..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 67777777777777777777765322 445 6667777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCh------hhHHHHHHHHH-----hcCCH---HHHHHHHHHHHhcCCCchHHHHHHHHHHhhC-
Q 038112 328 EAISIWELLREKNCNADS------TTHGVLINGLC-----KNGYL---NKAIQILNEVEEGGEGRLADAASLVNRMDKH- 392 (625)
Q Consensus 328 ~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~- 392 (625)
+|+..++.+.. .|+. ......+.... ..+++ +.|+..++ .+...
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~------------------~ll~~~ 226 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD------------------ALEALW 226 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH------------------HHHhhc
Confidence 77777765443 1111 01111112111 11122 44555555 33322
Q ss_pred CCCccH--H---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 038112 393 GCKLNA--Y---TCNSLMNGFIQASKLENAIFLFKEMSRKGCS-PTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKP 466 (625)
Q Consensus 393 ~~~~~~--~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 466 (625)
...|+. . .....+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++.......
T Consensus 227 ~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~ 305 (765)
T PRK10049 227 HDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETI 305 (765)
T ss_pred ccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCC
Confidence 111211 1 1111133456779999999999999887532 222 22235678999999999999999988643111
Q ss_pred ---CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 038112 467 ---DMITYSLLINGLCQSKKIDMALKLCCQFLQKGF-----------TPD---VTMYNILIHGLCSAGKVEDALQLYSNM 529 (625)
Q Consensus 467 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 529 (625)
.......+..++...|++++|...++.+..... .|+ ...+..++..+...|++++|+.+++++
T Consensus 306 ~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~a 385 (765)
T PRK10049 306 ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAREL 385 (765)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 124456677788999999999999999987521 122 235567788899999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCH
Q 038112 530 KKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD-IISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTT 608 (625)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 608 (625)
... .|.+...+..++..+...|++++|++.++++++ +.|+ ...+...+..+.+.|++++|..+++++++. .|+.
T Consensus 386 l~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~ 460 (765)
T PRK10049 386 AYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQD 460 (765)
T ss_pred HHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCC
Confidence 986 466788999999999999999999999999999 7785 567777788899999999999999999963 4665
Q ss_pred HHHHHHHHHH
Q 038112 609 ITWHILVRAV 618 (625)
Q Consensus 609 ~~~~~l~~~~ 618 (625)
.....+-..+
T Consensus 461 ~~~~~~~~~~ 470 (765)
T PRK10049 461 PGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHH
Confidence 5544444433
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=9.4e-20 Score=188.22 Aligned_cols=420 Identities=10% Similarity=0.043 Sum_probs=297.4
Q ss_pred CHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHH
Q 038112 134 DVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMI 213 (625)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 213 (625)
+.....-.+......|+.++|++++.+..... +.+...+..++..+...|++++|.+.|+++.+.. |.+...+..++
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la 90 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLI 90 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 33334444555667888888888888877632 3344567778888888888888888888877753 44556677777
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHH
Q 038112 214 NGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIK 293 (625)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (625)
.++...|++++|+..++++.+..+ .+.. +..+...+...|+.++|+..++++++..+. +...+..+..++...+..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChH
Confidence 888888888888888888877643 3445 777778888888888888888888876443 5566666777777788888
Q ss_pred HHHHHHHHHHhcCCCc-----HHHHHHHHHHHHh-----CCCH---HHHHHHHHHHHHc-CCCCChh-hHH----HHHHH
Q 038112 294 ECFELWEVMGRKGCLN-----VVSYNILIRGLLE-----NGKV---DEAISIWELLREK-NCNADST-THG----VLING 354 (625)
Q Consensus 294 ~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~ 354 (625)
.|++.++.+.. .|.. ......++..... .+++ ++|+..++.+... ...|+.. .+. ..+..
T Consensus 168 ~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 168 PALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 88888876554 2211 1122222222221 2234 7788888888864 2223221 111 11334
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--
Q 038112 355 LCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCK-LNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSP-- 431 (625)
Q Consensus 355 ~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 431 (625)
+...|++++|+..|+ .+...+.+ |+. ....+...|...|++++|...|+++.......
T Consensus 247 Ll~~g~~~eA~~~~~------------------~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~ 307 (765)
T PRK10049 247 LLARDRYKDVISEYQ------------------RLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIAD 307 (765)
T ss_pred HHHhhhHHHHHHHHH------------------HhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCC
Confidence 567788999999888 44444322 221 22235778999999999999999988653221
Q ss_pred -ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC-----------CCC---HhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 038112 432 -TVVSYNTLINGLCKVERFGEAYSFVKEMLEKGW-----------KPD---MITYSLLINGLCQSKKIDMALKLCCQFLQ 496 (625)
Q Consensus 432 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 496 (625)
.......+..++...|++++|..+++.+..... .|+ ...+..+...+...|++++|+++++++..
T Consensus 308 ~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~ 387 (765)
T PRK10049 308 LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY 387 (765)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 123456667778899999999999999987521 122 22455677788999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHH
Q 038112 497 KGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISY 576 (625)
Q Consensus 497 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 576 (625)
.. +.+...+..++..+...|++++|++.++++.... |.+...+..++..+...|++++|..+++++++ ..|+....
T Consensus 388 ~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~ 463 (765)
T PRK10049 388 NA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGV 463 (765)
T ss_pred hC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHH
Confidence 63 5568899999999999999999999999999863 44577888888899999999999999999999 77876655
Q ss_pred HHHHHHH
Q 038112 577 NITLKGL 583 (625)
Q Consensus 577 ~~l~~~~ 583 (625)
..+-+.+
T Consensus 464 ~~~~~~~ 470 (765)
T PRK10049 464 QRLARAR 470 (765)
T ss_pred HHHHHHH
Confidence 5554443
No 26
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=2.4e-21 Score=187.22 Aligned_cols=295 Identities=12% Similarity=0.073 Sum_probs=194.3
Q ss_pred HHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCC-----------cchhhhc
Q 038112 45 LRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCE-----------AGILCRK 113 (625)
Q Consensus 45 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~ 113 (625)
+..+...|++++|...|+++++.+| .+..++..++..+...|++++|...++.+....+.. ...+.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 4445556666666666666666643 345566666666666666666666666654321111 0114455
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCc----hhhHHHHHHHHhcCChhHH
Q 038112 114 RQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNV----VCYNILIDGFFKKGDYMRA 189 (625)
Q Consensus 114 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a 189 (625)
|++++|+.+|+++.+.+ +++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..++..+...|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 55555555555555543 455677778888888888888888888888776433221 1344566677778888888
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038112 190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVE 269 (625)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 269 (625)
...|+++.+.. +.+...+..++..+.+.|++++|.+.++++...++.....++..++.+|...|++++|...++++.+
T Consensus 200 ~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 200 RALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888877652 3345567777788888888888888888887654333345567777888888888888888888777
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCChh
Q 038112 270 SGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLE---NGKVDEAISIWELLREKNCNADST 346 (625)
Q Consensus 270 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 346 (625)
.. |+...+..++..+.+.|++++|..+++.+.+..|.+. .+..++..+.. .|+.++++.+++.+.+.++.|++.
T Consensus 278 ~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 278 EY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 53 4555557777888888888888888887777654443 45555555443 457778888888888766665554
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.91 E-value=2e-18 Score=174.31 Aligned_cols=445 Identities=12% Similarity=0.061 Sum_probs=303.8
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChh
Q 038112 144 GLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFD 223 (625)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 223 (625)
...+.|+++.|+..|++..+..+.-.+..+ .++..+...|+.++|+..+++.... .+........++..+...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHH
Confidence 356788888888888888776332112233 6777777778888888888887621 1112222233355777778888
Q ss_pred hHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112 224 ECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMG 303 (625)
Q Consensus 224 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 303 (625)
+|+++|+++.+..+. ++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 888888888877653 4666667778888888888888888888775 3444444444444444566666888888888
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC---
Q 038112 304 RKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEG---GEG--- 377 (625)
Q Consensus 304 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~--- 377 (625)
...|.+...+..+..++.+.|-...|.++...-... +. ......+ . .+.+.+..+..... ...
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~--~~~~~~l-~-------~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VS--AEHYRQL-E-------RDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cC--HHHHHHH-H-------HHHHHHHHhhcccccccchhhHH
Confidence 888888888888888888888888887666542211 11 1111110 0 00000000000000 000
Q ss_pred chHHHHHHHHHHhh-CCCCcc-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHH
Q 038112 378 RLADAASLVNRMDK-HGCKLN-A----YTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGE 451 (625)
Q Consensus 378 ~~~~a~~~~~~~~~-~~~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 451 (625)
-.+.+..-++.+.. .+..|. . ....-.+.++...+++.++++.|+.+...+.+....+-..+..+|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 11122222333333 111121 1 12233455678889999999999999988765556678889999999999999
Q ss_pred HHHHHHHHHHCC-----CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHH
Q 038112 452 AYSFVKEMLEKG-----WKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGF-----------TPD---VTMYNILIHG 512 (625)
Q Consensus 452 a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~ 512 (625)
|+.++..+.... ..++......|..++...+++++|..+++++.+... .|+ ...+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 999999987642 122334457889999999999999999999987311 122 2344556778
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCChHH
Q 038112 513 LCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD-IISYNITLKGLCSCSRMSD 591 (625)
Q Consensus 513 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 591 (625)
+...|++.+|.+.++++... -|-|..+...++..+...|.+.+|.+.++.+.. +.|+ ..+....+.++...|++.+
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHH
Confidence 88999999999999999886 477899999999999999999999999988877 6774 4677788889999999999
Q ss_pred HHHHHHHHHHCCCCCCHHH
Q 038112 592 AFEFLNDALCRGILPTTIT 610 (625)
Q Consensus 592 A~~~~~~~~~~~~~~~~~~ 610 (625)
|..+.+++.+. .|+...
T Consensus 503 A~~~~~~l~~~--~Pe~~~ 519 (822)
T PRK14574 503 MELLTDDVISR--SPEDIP 519 (822)
T ss_pred HHHHHHHHHhh--CCCchh
Confidence 99999999864 355443
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=5.8e-18 Score=171.07 Aligned_cols=441 Identities=12% Similarity=0.083 Sum_probs=279.7
Q ss_pred hhcCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHH
Q 038112 111 CRKRQFEKAKRFLNSLWEKGLKPDV-YSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA 189 (625)
Q Consensus 111 ~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 189 (625)
.++|+++.|+..|+++++.+ |.+. ..+ .++..+...|+.++|+..+++.... .+........++..+...|++++|
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34444444444444444443 1111 222 5555556667777777776666621 111122222234466666777777
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038112 190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVE 269 (625)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 269 (625)
+++|+++.+.. |.+...+..++..+...++.++|++.++++.... |+...+..++..+...++..+|++.++++.+
T Consensus 122 iely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 122 LALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 77777766653 3344455555666666677777777776666542 2333333333333334455457777777766
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH--HHHHHHHH---------hCCC---HHHHHHHHHH
Q 038112 270 SGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSY--NILIRGLL---------ENGK---VDEAISIWEL 335 (625)
Q Consensus 270 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~l~~~~~---------~~~~---~~~a~~~~~~ 335 (625)
..+. +...+..+..+..+.|-...|.++...-...-.+....+ ...+.-.+ ...+ .+.|+.-++.
T Consensus 198 ~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 5422 556666666666666666666655554332211111111 00000011 1112 3455555666
Q ss_pred HHHc-CCCCChhh-----HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 038112 336 LREK-NCNADSTT-----HGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFI 409 (625)
Q Consensus 336 ~~~~-~~~~~~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (625)
+... +..|.... ..-.+-++...+++.++++.++ .+...+.+....+-..+..+|.
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~------------------~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYE------------------AMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH------------------HhhhcCCCCCHHHHHHHHHHHH
Confidence 5542 12232211 2234557778888888888888 6777776666778899999999
Q ss_pred hcCCHHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC-----------CCC--H-hh
Q 038112 410 QASKLENAIFLFKEMSRKGC-----SPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGW-----------KPD--M-IT 470 (625)
Q Consensus 410 ~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~--~-~~ 470 (625)
..+++++|..+|.++..... .++......|..++...+++++|..+++++.+... .|+ - ..
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 99999999999999976431 22333457888999999999999999999987311 112 1 23
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 038112 471 YSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK 550 (625)
Q Consensus 471 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 550 (625)
...++..+...|+..+|.+.++++.... |-|......++..+...|.+.+|...++.+... -+.+..+....+.++..
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHh
Confidence 4456777889999999999999998864 568999999999999999999999999877765 34457788889999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038112 551 TGDCDKALEIWNHILEERLRPDIISYNITLK 581 (625)
Q Consensus 551 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 581 (625)
.|++.+|..+.+.+.+ ..|+......+-+
T Consensus 497 l~e~~~A~~~~~~l~~--~~Pe~~~~~~l~r 525 (822)
T PRK14574 497 LQEWHQMELLTDDVIS--RSPEDIPSQELDR 525 (822)
T ss_pred hhhHHHHHHHHHHHHh--hCCCchhHHHHHH
Confidence 9999999999999999 7786665554444
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.89 E-value=1.8e-17 Score=158.96 Aligned_cols=558 Identities=15% Similarity=0.082 Sum_probs=374.5
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch-------h
Q 038112 38 PHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI-------L 110 (625)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~ 110 (625)
.....+.+..+...|++++|.+++.+++++.| .+...|..|+.+|-..|+.+++...+-.+....|..... .
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 34455566667778999999999999999974 588899999999999999999999888776666666555 5
Q ss_pred hhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhH----HHHHHHHhcCCh
Q 038112 111 CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYN----ILIDGFFKKGDY 186 (625)
Q Consensus 111 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~ 186 (625)
.+.|++.+|.-+|.++++.+ |++....-.-+..|-+.|+...|...|.++....++.|-.-+. ..++.+...++-
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 67899999999999999987 6666666667788999999999999999999985533333222 345667777888
Q ss_pred hHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhH----------------------
Q 038112 187 MRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTY---------------------- 244 (625)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---------------------- 244 (625)
+.|.+.++.......-..+...++.++..+.+...++.+......+.....++|..-+
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 9999999988875545566778999999999999999999988877652222221111
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Q 038112 245 ----CSFIHGLCKAGNVEGAERVYREMVESG--IFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-NVVSYNILI 317 (625)
Q Consensus 245 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~ 317 (625)
..+.-++......+....+...+.... +.-+...+..+..++...|++.+|+.+|..+....+. +...|..++
T Consensus 377 ~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 377 DLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred cchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 123344555566666666666666665 3445678899999999999999999999999887655 788999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCcc
Q 038112 318 RGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLN 397 (625)
Q Consensus 318 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 397 (625)
.+|...|.+++|.+.|+..+...+. +...-..+...+.+.|+.++|.+.+..+...+.. ........|.
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~----------~~e~~a~~~e 525 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGR----------NAEACAWEPE 525 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc----------chhhccccHH
Confidence 9999999999999999999988433 5556667888899999999999999865422211 1222333445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----------------------CCCChhhHHHHHHHHhccCCHHHHHHH
Q 038112 398 AYTCNSLMNGFIQASKLENAIFLFKEMSRKG----------------------CSPTVVSYNTLINGLCKVERFGEAYSF 455 (625)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~ 455 (625)
..........+.+.|+.++=..+-..|.... ..........++.+-.+.++......-
T Consensus 526 ~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 605 (895)
T KOG2076|consen 526 RRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKA 605 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhc
Confidence 5555555566677777665444444333210 011111222333333333332222111
Q ss_pred HHHH------HHCCCCCCH--hhHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHcCCCHHHH
Q 038112 456 VKEM------LEKGWKPDM--ITYSLLINGLCQSKKIDMALKLCCQFLQKGF-TPDV----TMYNILIHGLCSAGKVEDA 522 (625)
Q Consensus 456 ~~~~------~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A 522 (625)
...- ...++.-+. ..+..++..+++.+.+++|+.+...+..... ..+. ..-...+.+....+++..|
T Consensus 606 l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a 685 (895)
T KOG2076|consen 606 LSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDA 685 (895)
T ss_pred ccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 1111 111121111 2455667788899999999999988876421 1122 2223445666788999999
Q ss_pred HHHHHHHHhC-CC--CCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCChHHHHHHH
Q 038112 523 LQLYSNMKKR-NC--VPN-LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD--IISYNITLKGLCSCSRMSDAFEFL 596 (625)
Q Consensus 523 ~~~~~~~~~~-~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~ 596 (625)
...++.+... +. .|. ...|+.........|+-.-=.+++..+.. .+|+ +........-...++.+..|+..+
T Consensus 686 ~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y 763 (895)
T KOG2076|consen 686 FSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEY 763 (895)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHH
Confidence 9999998875 11 222 33444445555555544434444444443 2332 222333334556678888888877
Q ss_pred HHHHHCCCCCCHHHHH
Q 038112 597 NDALCRGILPTTITWH 612 (625)
Q Consensus 597 ~~~~~~~~~~~~~~~~ 612 (625)
-+... ..||....+
T Consensus 764 ~ra~~--~~pd~Pl~n 777 (895)
T KOG2076|consen 764 MRAFR--QNPDSPLIN 777 (895)
T ss_pred HHHHH--hCCCCcHHH
Confidence 77664 346644444
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.89 E-value=2.3e-16 Score=145.67 Aligned_cols=563 Identities=13% Similarity=0.024 Sum_probs=331.2
Q ss_pred HHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCc
Q 038112 10 NLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMP 89 (625)
Q Consensus 10 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (625)
++--..|++..|..+....++.- |.+..+|..-++ ....+.|..+...+++.. |.+..+|...+..- .+.
T Consensus 293 rLEEvagKl~~Ar~~I~~GCe~c--prSeDvWLeaiR----Lhp~d~aK~vvA~Avr~~-P~Sv~lW~kA~dLE---~~~ 362 (913)
T KOG0495|consen 293 RLEEVAGKLSVARNLIMKGCEEC--PRSEDVWLEAIR----LHPPDVAKTVVANAVRFL-PTSVRLWLKAADLE---SDT 362 (913)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhC--CchHHHHHHHHh----cCChHHHHHHHHHHHHhC-CCChhhhhhHHhhh---hHH
Confidence 44445677777777666666544 666666665543 334455666666666553 34555554444332 122
Q ss_pred hHHHHHHHHhHHhhCCCcch---hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 038112 90 DKALDVFQRMNEIFGCEAGI---LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGV 166 (625)
Q Consensus 90 ~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 166 (625)
..=.+++.+.++..|....+ .....+.+.|+-++.++.+-- +.+...|. ++++..-++.|..+++++.+. +
T Consensus 363 ~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAvecc-p~s~dLwl----AlarLetYenAkkvLNkaRe~-i 436 (913)
T KOG0495|consen 363 KNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECC-PQSMDLWL----ALARLETYENAKKVLNKAREI-I 436 (913)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhc-cchHHHHH----HHHHHHHHHHHHHHHHHHHhh-C
Confidence 33344555555544444443 233344444555555554431 22222222 233444455555555555544 4
Q ss_pred CCCchhhHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC--Ch
Q 038112 167 ETNVVCYNILIDGFFKKGDYMRAKEIWERLVM---ETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREK--DS 241 (625)
Q Consensus 167 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~ 241 (625)
+.++.+|......-...|+.+....+..+.+. .+|+.-+...|..-...+-..|..--+..+....+.-|++- -.
T Consensus 437 ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~ 516 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRK 516 (913)
T ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhH
Confidence 44555555555555555555555554443321 22244444444444444444444444444444444433321 12
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 038112 242 FTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLL 321 (625)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (625)
.+|..-...|.+.+.++-|..+|...++.- +.+...|......--..|..+....+|+++....|.....|......+.
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW 595 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 244444444444555555555554444431 1133334444433334444444444444444444444444444444444
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------------CCchHHHHHHH
Q 038112 322 ENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG---------------EGRLADAASLV 386 (625)
Q Consensus 322 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------~~~~~~a~~~~ 386 (625)
..|+...|..++..+.+..+. +...|...+.......+++.|..+|.+..... .+..++|.+++
T Consensus 596 ~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 444444444444444444322 33444444444444444444444444443322 23344444444
Q ss_pred HHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 038112 387 NRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKP 466 (625)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 466 (625)
+...+. ++.-...|..+.+.+-+.++.+.|...|..-.+. ++..+..|..+...-.+.|..-.|..++++..-.+ +-
T Consensus 675 Ee~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk 751 (913)
T KOG0495|consen 675 EEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PK 751 (913)
T ss_pred HHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CC
Confidence 455544 3335567888889999999999999999887665 34456678888888888899999999999988764 44
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038112 467 DMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMD 546 (625)
Q Consensus 467 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 546 (625)
+...|...++.-.+.|+.+.|..++.++++. .+.+...|..-|....+.++-....+.+++ +..|+.....++.
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~ 825 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAK 825 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHH
Confidence 6788899999999999999999999998886 355667788778777776665555444433 4568888889999
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 547 GLFKTGDCDKALEIWNHILEERLRPDI-ISYNITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 547 ~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
.+.....+++|++.|.++++ ..||. .+|..+...+...|.-++-.++++++..
T Consensus 826 lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 99999999999999999999 67755 7888888999999998888899988874
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=5.4e-16 Score=137.77 Aligned_cols=456 Identities=12% Similarity=0.056 Sum_probs=323.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHH
Q 038112 113 KRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEI 192 (625)
Q Consensus 113 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 192 (625)
++++..|+.+|++++..+ ..+...|...+.+-.++.....|..++++++..-+. -...|.-.+.+-...|+...|+++
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHHHHHhcccHHHHHH
Confidence 344555556666666554 456777888888888888888899999888876332 223455555666677888999999
Q ss_pred HHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 038112 193 WERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVES-G 271 (625)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 271 (625)
|++..+ ..|+..+|++.|..-.+.+.++.|..++++..-. .|++.+|...++.-.+.|+...+..+|+...+. |
T Consensus 164 ferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 164 FERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 988876 6788889999998888888999999998887654 478888888888888888888888888888764 1
Q ss_pred C-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHhCCCHHHHHH--------HHHHHHHcC
Q 038112 272 I-FVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLN--VVSYNILIRGLLENGKVDEAIS--------IWELLREKN 340 (625)
Q Consensus 272 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~--------~~~~~~~~~ 340 (625)
- ..+...+.+.+..-.++..++.|.-+|+-....-|.+ ...|..+...--+-|+...... -++.+...+
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 1 1123344444444556777888888888888776664 5555555555455555433322 234444443
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccH--HHHHHHHH--------HHHh
Q 038112 341 CNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNA--YTCNSLMN--------GFIQ 410 (625)
Q Consensus 341 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~--------~~~~ 410 (625)
+.|-.+|...+..-...|+.+...++++++.. . ++|-. ..|...|- .-..
T Consensus 319 -p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa------------------n-vpp~~ekr~W~RYIYLWinYalyeEle 378 (677)
T KOG1915|consen 319 -PYNYDSWFDYLRLEESVGDKDRIRETYERAIA------------------N-VPPASEKRYWRRYIYLWINYALYEELE 378 (677)
T ss_pred -CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc------------------c-CCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33777788888888888888888888885332 2 22211 11211111 1134
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH----hccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHH
Q 038112 411 ASKLENAIFLFKEMSRKGCSPTVVSYNTLINGL----CKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDM 486 (625)
Q Consensus 411 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 486 (625)
..+.+.+.++|+..++. ++....+|..+--.| .++.+...|.+++..++. ..|...+|...+..-.+.++++.
T Consensus 379 ~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDR 455 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDR 455 (677)
T ss_pred hhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHH
Confidence 67889999999988874 344555665544333 467889999999998885 57888999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 038112 487 ALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNC-VPNLVTYNTLMDGLFKTGDCDKALEIWNHIL 565 (625)
Q Consensus 487 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (625)
+.+++++.++-+ +.+..+|...+..-...|+.+.|..+|+-+++... ......|...+..-...|.+++|..+|++++
T Consensus 456 cRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 456 CRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred HHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 999999999975 45788999999888899999999999999997632 1225567777777788999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHh-----hcC-----------ChHHHHHHHHHHHH
Q 038112 566 EERLRPDIISYNITLKGLC-----SCS-----------RMSDAFEFLNDALC 601 (625)
Q Consensus 566 ~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 601 (625)
+ ..+-..+|-..+..-. +.| ....|.++|+++..
T Consensus 535 ~--rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 535 D--RTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred H--hcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 8 3444445555554322 233 56678888887754
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=2e-17 Score=146.03 Aligned_cols=277 Identities=13% Similarity=0.109 Sum_probs=189.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCH
Q 038112 249 HGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR--AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKV 326 (625)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 326 (625)
..+.+.|+++.|+++++-+.+..-+.....-+.+...+.- -.++..|..+-+.....+.-++.+...-......+|++
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 3467788888888888777665433223333333333332 34577777777777666655777776666667778888
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHH---HHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHH
Q 038112 327 DEAISIWELLREKNCNADSTTHGVL---INGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNS 403 (625)
Q Consensus 327 ~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 403 (625)
++|.+.|++.+.. |......+ .-.+-..|++++|++.|-++.. +. ..+..+...
T Consensus 507 dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~klh~---------------il----~nn~evl~q 563 (840)
T KOG2003|consen 507 DKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHA---------------IL----LNNAEVLVQ 563 (840)
T ss_pred HHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH---------------HH----HhhHHHHHH
Confidence 8888888888776 33333332 3345667778888777764321 11 125666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCC
Q 038112 404 LMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKK 483 (625)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 483 (625)
+...|....+..+|++++.+.... ++.|+.....+...|-+.|+...|.+++-+-..- ++.+..+...+...|....-
T Consensus 564 ianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf 641 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQF 641 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHH
Confidence 777788888888888888776654 3446777788888888888888888776655543 56677777778777787777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 038112 484 IDMALKLCCQFLQKGFTPDVTMYNILIH-GLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGD 553 (625)
Q Consensus 484 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 553 (625)
++++...|++..- +.|+..-|..++. ++.+.|++++|+++|+...+. ++.|...+.-|++.+...|-
T Consensus 642 ~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 642 SEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 8888888887654 5778877776654 445678888888888888776 67777777778877777664
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=1.9e-17 Score=146.07 Aligned_cols=455 Identities=14% Similarity=0.119 Sum_probs=298.6
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchh-hHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCc------ch
Q 038112 136 YSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVC-YNILIDGFFKKGDYMRAKEIWERLVMETSVYPNV------VT 208 (625)
Q Consensus 136 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~ 208 (625)
.++..+.+.|..+....+|+..|+-+.+...-|+... -..+.+.+.+.+.+.+|++.|+..+..- |++ ..
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqv---psink~~riki 278 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQV---PSINKDMRIKI 278 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhc---cccchhhHHHH
Confidence 3445556667777888899999998888766566543 3457788889999999999998877642 332 24
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC------------H
Q 038112 209 YNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVD------------A 276 (625)
Q Consensus 209 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------~ 276 (625)
.+.+...+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|+.....|| .
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 556666788999999999999988766 46777766777788888999999999999886533222 2
Q ss_pred HHHHHH-----HHHHHhcCCHHHHHHHHHHHHh-cCCC---c-----HHH----------------HHHHHHHHHhCCCH
Q 038112 277 VTYNAM-----IDGFCRAGKIKECFELWEVMGR-KGCL---N-----VVS----------------YNILIRGLLENGKV 326 (625)
Q Consensus 277 ~~~~~l-----~~~~~~~~~~~~a~~~~~~~~~-~~~~---~-----~~~----------------~~~l~~~~~~~~~~ 326 (625)
...+.. +.-..+.++ ..|.+..-...+ ..|. + .++ -..-...+.++|++
T Consensus 357 ~ll~eai~nd~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 222221 111111111 112221111111 1110 0 000 01112335566777
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHH
Q 038112 327 DEAISIWELLREKNCNADSTTHGVLINGLCK--NGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSL 404 (625)
Q Consensus 327 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 404 (625)
+.|+++++-+.+.+-+.-+..-+.+...+.. -.++..|.+.-+. .... ...++.....-
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~------------------aln~-dryn~~a~~nk 496 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADI------------------ALNI-DRYNAAALTNK 496 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHH------------------Hhcc-cccCHHHhhcC
Confidence 7777776666655322212222222211111 2234444443332 1111 11122222333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCH
Q 038112 405 MNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKI 484 (625)
Q Consensus 405 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 484 (625)
.+.....|++++|...|++.......-....|| +.-.+...|+.++|++.|-++..- +..+..++..+...|....+.
T Consensus 497 gn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 497 GNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred CceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCH
Confidence 334456789999999999988752221111222 233466789999999998877653 344677888888899999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 038112 485 DMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHI 564 (625)
Q Consensus 485 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (625)
.+|.+++.+.... ++.|+.+...|...|-+.|+-.+|.+++-.-.+. ++-|..+...|+..|....-+++|+.+|+++
T Consensus 575 aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 575 AQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999887765 5778889999999999999999999887666655 6778889999999999999999999999998
Q ss_pred HHcCCCCCHHHHHHHHH-HHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 038112 565 LEERLRPDIISYNITLK-GLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622 (625)
Q Consensus 565 ~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 622 (625)
.- +.|+..-|..++. ++.+.|++.+|..+++...+. ++.|..+...|+..|...|
T Consensus 653 al--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 653 AL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred Hh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 87 8999988887775 455689999999999988753 6667788888888877655
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=1.2e-14 Score=129.32 Aligned_cols=476 Identities=14% Similarity=0.073 Sum_probs=347.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCC
Q 038112 60 ILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLK 132 (625)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~ 132 (625)
-|+.-+..+ ..+...|...++--..++++..|+++|++++.....+..+ -.+..+...|+.+++++...- |
T Consensus 61 efEd~irrn-R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-P 138 (677)
T KOG1915|consen 61 EFEDQIRRN-RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-P 138 (677)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-c
Confidence 344445443 3466778888888888889999999999988866655555 346778888999999988764 3
Q ss_pred CCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHH
Q 038112 133 PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVM 212 (625)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 212 (625)
.-...|...+.+--..|+...|.++|++-.+- .|+...|...++.-.+....+.|+.+|++.+- ..|++.+|...
T Consensus 139 RVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wiky 213 (677)
T KOG1915|consen 139 RVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKY 213 (677)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHH
Confidence 33456777777777889999999999988775 78999999999999999999999999999876 56999999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhc
Q 038112 213 INGLCKCGRFDECLEMWDRMKKNER--EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVD-AVTYNAMIDGFCRA 289 (625)
Q Consensus 213 ~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 289 (625)
...-.++|+...+..+|+...+.-. .-+...+.+++..-.++..++.|.-+|.-.+.+-++.. ...|..+...--+-
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqf 293 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQF 293 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHh
Confidence 9999999999999999988765311 12334566666666677889999999999888733322 34444444444455
Q ss_pred CCHHHHHH--------HHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh-hHHHHHH-----H-
Q 038112 290 GKIKECFE--------LWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADST-THGVLIN-----G- 354 (625)
Q Consensus 290 ~~~~~a~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~-----~- 354 (625)
|+.....+ -++...+.+|.|-.+|...+...-..|+.+...++|++.+..-++.+.. .|...+- +
T Consensus 294 Gd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYal 373 (677)
T KOG1915|consen 294 GDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYAL 373 (677)
T ss_pred cchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHH
Confidence 66544433 3566677788899999999999999999999999999999874332221 1222111 1
Q ss_pred --HHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038112 355 --LCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTC----NSLMNGFIQASKLENAIFLFKEMSRKG 428 (625)
Q Consensus 355 --~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~ 428 (625)
-....+.+.+.+++.. ... -+|....+| ......-.+..++..|.+++...+..
T Consensus 374 yeEle~ed~ertr~vyq~------------------~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~- 433 (677)
T KOG1915|consen 374 YEELEAEDVERTRQVYQA------------------CLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK- 433 (677)
T ss_pred HHHHHhhhHHHHHHHHHH------------------HHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc-
Confidence 1245566667777663 333 122233344 34444456778999999999887754
Q ss_pred CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCCHHHHH
Q 038112 429 CSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGF-TPDVTMYN 507 (625)
Q Consensus 429 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 507 (625)
-|...+|...|..-.+.+.++.+..++++.++.+ +.+..+|......-...|+.+.|..+|.-++.... ......|.
T Consensus 434 -cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk 511 (677)
T KOG1915|consen 434 -CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK 511 (677)
T ss_pred -CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH
Confidence 6788899999999999999999999999999864 44667888888888889999999999999887421 11234566
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----ccC-----------ChhHHHHHHHHHHH
Q 038112 508 ILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLF-----KTG-----------DCDKALEIWNHILE 566 (625)
Q Consensus 508 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 566 (625)
..+..-...|.++.|..+|+++.+. .+...+|...+..-. ..| ....|..+|+++..
T Consensus 512 aYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 512 AYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 6666667899999999999999985 345556666655443 333 45678888888765
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=4e-14 Score=124.45 Aligned_cols=323 Identities=16% Similarity=0.196 Sum_probs=238.9
Q ss_pred CCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHccCCchHH-HHHHHHhHHhhCCCcchhhh
Q 038112 36 HSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQA--YGKNSMPDKA-LDVFQRMNEIFGCEAGILCR 112 (625)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~~ 112 (625)
.....-..++. +...|...++--+|+.|...|.+.++.+-..+.+. |....++--| ++.|-.+ ...+.....--+
T Consensus 114 ~~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~-~~~~E~S~~sWK 191 (625)
T KOG4422|consen 114 LQVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGM-RNFGEDSTSSWK 191 (625)
T ss_pred hhhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhc-cccccccccccc
Confidence 33344444444 34589999999999999999999888887776653 3344444322 3344444 233333333445
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHH
Q 038112 113 KRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEI 192 (625)
Q Consensus 113 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 192 (625)
.|...+ -+|+. .|....++..+|.++++-...+.|.+++++......+.+..+|+.++.+-.-. .-.++
T Consensus 192 ~G~vAd--L~~E~-----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~L 260 (625)
T KOG4422|consen 192 SGAVAD--LLFET-----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKL 260 (625)
T ss_pred cccHHH--HHHhh-----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHH
Confidence 555544 33333 24567889999999999999999999999999888888999999988765432 22677
Q ss_pred HHHHHhCCCCCCCcchHHHHHHHHHhcCChhh----HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHH
Q 038112 193 WERLVMETSVYPNVVTYNVMINGLCKCGRFDE----CLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEG-AERVYREM 267 (625)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~ 267 (625)
..+|.... ..||..++|.++.+..+.|+++. |.+++.+|++.|++|...+|..++..+.+.++..+ +..++.++
T Consensus 261 v~EMisqk-m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 261 VAEMISQK-MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred HHHHHHhh-cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 77887776 89999999999999999998875 46778899999999999999999999999888755 45555555
Q ss_pred HHC----CC---Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CC--cHHHHHHHHHHHHhCCCHHHHHH
Q 038112 268 VES----GI---FV-DAVTYNAMIDGFCRAGKIKECFELWEVMGRKG------CL--NVVSYNILIRGLLENGKVDEAIS 331 (625)
Q Consensus 268 ~~~----~~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~--~~~~~~~l~~~~~~~~~~~~a~~ 331 (625)
... .+ .| +...|...+..|.+..+.+-|.++...+.... +. ....|..+....+.....+.-..
T Consensus 340 ~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~ 419 (625)
T KOG4422|consen 340 QNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLK 419 (625)
T ss_pred HHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 12 22 44556777888888899988888876665332 11 34456677777888888999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112 332 IWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVE 372 (625)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 372 (625)
.|+.|...-+-|...+...++++....+.++-...++....
T Consensus 420 ~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~ 460 (625)
T KOG4422|consen 420 WYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSK 460 (625)
T ss_pred HHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHH
Confidence 99999998888999999999999988898888888877443
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=2.1e-13 Score=120.02 Aligned_cols=436 Identities=16% Similarity=0.186 Sum_probs=290.2
Q ss_pred HhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHH--HHhcCChhHHH-HHHHHHHhCCCCCCCcchHHH
Q 038112 135 VYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDG--FFKKGDYMRAK-EIWERLVMETSVYPNVVTYNV 211 (625)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~ 211 (625)
+.+=+.++. ....|...++.-+|+.|...|++.++..-..+++. |....+.--|. +.|-.+...+ ..+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~--E~S~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG--EDSTSSW-- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc--ccccccc--
Confidence 445555555 45678889999999999999888887776666554 33333332221 2222333222 2233333
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 038112 212 MINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGK 291 (625)
Q Consensus 212 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (625)
+.|+..+ ++-+.. +.+..++..+|.+.++--..+.|.+++++......+.+..+|+.++.+-.-...
T Consensus 191 ------K~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG 257 (625)
T ss_pred ------ccccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc
Confidence 2333332 333333 567778888888888888888888888888777777788888887766443322
Q ss_pred HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHhCCCHHH----HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH-HH
Q 038112 292 IKECFELWEVMGRKG-CLNVVSYNILIRGLLENGKVDE----AISIWELLREKNCNADSTTHGVLINGLCKNGYLNK-AI 365 (625)
Q Consensus 292 ~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~ 365 (625)
.+++.+|.... .||..++|.++.+..+.|+++. |.+++.+|.+.|+.|...+|..++..+.+.++..+ +.
T Consensus 258 ----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 258 ----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred ----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 56666666544 3588888888888888887665 45678889999999999999999998888777644 55
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---hhhHHH
Q 038112 366 QILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKG----CSPT---VVSYNT 438 (625)
Q Consensus 366 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~ 438 (625)
.++.++...-.|. -.+...+.+...|...+..|.+..+.+-|.++-.-+.... +.|+ ...|..
T Consensus 334 ~~i~dI~N~ltGK----------~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~ 403 (625)
T KOG4422|consen 334 SWINDIQNSLTGK----------TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRK 403 (625)
T ss_pred HHHHHHHHhhccC----------cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHH
Confidence 5555443321110 0111123355567778888889999999988876665421 2233 234667
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-
Q 038112 439 LINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAG- 517 (625)
Q Consensus 439 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 517 (625)
+..+.++....+.....++.|+-.-+-|+..+...++++....+.++-.-+++..+...|..-+......++..+++..
T Consensus 404 ~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~ 483 (625)
T KOG4422|consen 404 FFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL 483 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC
Confidence 7778888999999999999999877788889999999999999999988888888887765545544444444444433
Q ss_pred CH--------H-----HHHHHH-------HHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCC----CCH
Q 038112 518 KV--------E-----DALQLY-------SNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLR----PDI 573 (625)
Q Consensus 518 ~~--------~-----~A~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~~ 573 (625)
++ . -|..++ .++.+. .-.....+..+..+.+.|..++|.+++....+++-+ |..
T Consensus 484 hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~l 561 (625)
T KOG4422|consen 484 HPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLL 561 (625)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcch
Confidence 11 0 111111 222332 334566777888889999999999999999765422 233
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHCCC
Q 038112 574 ISYNITLKGLCSCSRMSDAFEFLNDALCRGI 604 (625)
Q Consensus 574 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (625)
....-+.+.-........|...++-|...+.
T Consensus 562 nAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 562 NAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 3344566667777889999999998876543
No 37
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=1.2e-13 Score=118.57 Aligned_cols=439 Identities=13% Similarity=0.099 Sum_probs=251.9
Q ss_pred hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHH
Q 038112 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA 189 (625)
Q Consensus 110 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 189 (625)
+....++..|+.+++.-...+-.....+-..+..++...|++++|..++..+... -.++...+..++-++.-.|.+.+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHH
Confidence 3445566666666665554331112233334556677899999999999888775 455777888888888888999998
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038112 190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVE 269 (625)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 269 (625)
..+-... +.+......+.....+.++-++-..+-+.+.. ...--.++.......-.+++|+++|.+++.
T Consensus 111 ~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 111 KSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8876653 23334444555666677777776666665542 122333455555555668899999999887
Q ss_pred CCCCcCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhH
Q 038112 270 SGIFVDAVTYN-AMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348 (625)
Q Consensus 270 ~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 348 (625)
.+ |+....+ .+.-+|.+..-++-+.+++....+..|.++.+.+..+....+.=.-..|..-...+...+.. . |
T Consensus 180 dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~---~ 253 (557)
T KOG3785|consen 180 DN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E---Y 253 (557)
T ss_pred cC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---c
Confidence 53 3333333 35566778888888889988888888888888887776665543333333333333332211 0 0
Q ss_pred HHHHHHHHh-----cCCHHHHHHHHHHHHhcC-------------CCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh
Q 038112 349 GVLINGLCK-----NGYLNKAIQILNEVEEGG-------------EGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQ 410 (625)
Q Consensus 349 ~~l~~~~~~-----~~~~~~a~~~~~~~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (625)
..+.-+++ -.+-+.|++++-.+...- .++..+|..+..++.. ..|-......++ +..
T Consensus 254 -~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv--~aa 328 (557)
T KOG3785|consen 254 -PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV--FAA 328 (557)
T ss_pred -hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH--HHH
Confidence 01111111 122234444433322211 3344444444433321 122222222222 222
Q ss_pred cC-------CHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccC
Q 038112 411 AS-------KLENAIFLFKEMSRKGCSPTV-VSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSK 482 (625)
Q Consensus 411 ~~-------~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 482 (625)
.| ...-|.+.|+-.-+.+..-|. .--..+...+.-..++++.+-++..+..- +..|......+..+.+..|
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atg 407 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATG 407 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhc
Confidence 22 244555555554444333222 22344555555566777777777777664 3334444445677888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCChhHHHHHH
Q 038112 483 KIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVT-YNTLMDGLFKTGDCDKALEIW 561 (625)
Q Consensus 483 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~ 561 (625)
++.+|.++|-.+....++.+..-...|+++|.+.+.++-|.+++-++.. +.+..+ +..++.-|.+.+.+=-|.+.|
T Consensus 408 ny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 408 NYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred ChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888887776554443333335566788888888888776655433 223333 334456677777777777777
Q ss_pred HHHHHcCCCCCHHHHH
Q 038112 562 NHILEERLRPDIISYN 577 (625)
Q Consensus 562 ~~~~~~~~~p~~~~~~ 577 (625)
..+.. +.|+++.|.
T Consensus 485 d~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 485 DELEI--LDPTPENWE 498 (557)
T ss_pred hHHHc--cCCCccccC
Confidence 77766 677776653
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.1e-13 Score=121.39 Aligned_cols=384 Identities=12% Similarity=0.032 Sum_probs=215.7
Q ss_pred CCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhH
Q 038112 165 GVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTY 244 (625)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 244 (625)
+...|+..+...+..+-+.|....|+..|...+.. .|..-.+|..|..... +. +........ .+.+...+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~lit---~~----e~~~~l~~~-l~~~~h~M 228 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELIT---DI----EILSILVVG-LPSDMHWM 228 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhhc---hH----HHHHHHHhc-CcccchHH
Confidence 34445555555666667777778888777776654 2334444444433221 11 112222111 11111111
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHH
Q 038112 245 --CSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL---NVVSYNILIRG 319 (625)
Q Consensus 245 --~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~ 319 (625)
-.+..++......+++..-.......|++-+...-+..+.+.....+++.|+.+|+++.+.+|- +..+|..++-+
T Consensus 229 ~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 229 KKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 1223444455566666666666666666555555555555566666677777777777666553 44444444322
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHH
Q 038112 320 LLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAY 399 (625)
Q Consensus 320 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 399 (625)
--.. ..-+ . .|..++. +. +--+.
T Consensus 309 ~~~~--skLs--~------------------------------LA~~v~~-------------------id----KyR~E 331 (559)
T KOG1155|consen 309 KNDK--SKLS--Y------------------------------LAQNVSN-------------------ID----KYRPE 331 (559)
T ss_pred Hhhh--HHHH--H------------------------------HHHHHHH-------------------hc----cCCcc
Confidence 1111 0000 0 0111110 11 11233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHh
Q 038112 400 TCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLC 479 (625)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 479 (625)
|...+.+.|.-.++.++|...|++..+.++. ....|..+..-|....+...|.+-++.+++- .+.|...|..++++|.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYE 409 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHH
Confidence 4555666666666777777777776665432 4456666666677777777777777777764 2446667777777777
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHH
Q 038112 480 QSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALE 559 (625)
Q Consensus 480 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 559 (625)
-.+-+.=|+-.|++..... +.|...|..|+.+|.+.++.++|++.|.+....| ..+...+..|+..|-+.++..+|..
T Consensus 410 im~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHH
Confidence 7777777777777776642 4467777777777777777777777777777654 3355667777777777777777777
Q ss_pred HHHHHHHc----CCCCC--HHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038112 560 IWNHILEE----RLRPD--IISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNN 621 (625)
Q Consensus 560 ~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 621 (625)
.|++-++. |...+ ......|..-+.+.+++++|..+....... .+....-..|++-+.+.
T Consensus 488 ~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 488 YYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKALLREIRKI 553 (559)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHHHHHHHHHh
Confidence 77766651 22212 122223444566677777777776666653 45555556666665543
No 39
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=8.5e-14 Score=127.08 Aligned_cols=485 Identities=13% Similarity=0.045 Sum_probs=227.9
Q ss_pred CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcC
Q 038112 35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKR 114 (625)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (625)
..+..-+..+.+-+..+.++.-|.-.-+++.... .++.-...+++++.-.|.++.|......- .
T Consensus 13 ~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~------------- 76 (611)
T KOG1173|consen 13 ELSLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTY-K------------- 76 (611)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHh-h-------------
Confidence 4556666667766666777777777777777654 35555567777777777777777666543 1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC------------------------CCCCCc
Q 038112 115 QFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER------------------------GVETNV 170 (625)
Q Consensus 115 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------~~~~~~ 170 (625)
-. ..|.........++.+..++++|..++...... +.....
T Consensus 77 -------------le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~es 141 (611)
T KOG1173|consen 77 -------------LE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLES 141 (611)
T ss_pred -------------hh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchh
Confidence 10 134445555555555666666666655522000 000011
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhc-CChhhHHHHHHHHHhC-CCCCChhhHHHHH
Q 038112 171 VCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKC-GRFDECLEMWDRMKKN-EREKDSFTYCSFI 248 (625)
Q Consensus 171 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~ 248 (625)
..+..-...|....+.++|+..|...... |...+..+...-... =...+-..+++.+.-. ...-+......+.
T Consensus 142 sic~lRgk~y~al~n~~~ar~~Y~~Al~~-----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~ly 216 (611)
T KOG1173|consen 142 SICYLRGKVYVALDNREEARDKYKEALLA-----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILY 216 (611)
T ss_pred ceeeeeeehhhhhccHHHHHHHHHHHHhc-----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHH
Confidence 11111223344455666666666665443 333333322111100 0011111222110000 0000111111111
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHH
Q 038112 249 HGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDE 328 (625)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (625)
....-...-+.....-.+..-.+..-+.........-+...+++.+..++++.+....|.....+..-+.++...|+..+
T Consensus 217 el~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~ 296 (611)
T KOG1173|consen 217 ELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNK 296 (611)
T ss_pred HhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccch
Confidence 11100000000000000000012233455555555666666777777777777777766666666666666666666655
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 038112 329 AISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGF 408 (625)
Q Consensus 329 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 408 (625)
-..+-.++.+.-+ ..+.+|..+.--|...|+..+|...|.+.. ..+ +.-...|-.+...|
T Consensus 297 Lf~lsh~LV~~yP-~~a~sW~aVg~YYl~i~k~seARry~SKat------------------~lD-~~fgpaWl~fghsf 356 (611)
T KOG1173|consen 297 LFLLSHKLVDLYP-SKALSWFAVGCYYLMIGKYSEARRYFSKAT------------------TLD-PTFGPAWLAFGHSF 356 (611)
T ss_pred HHHHHHHHHHhCC-CCCcchhhHHHHHHHhcCcHHHHHHHHHHh------------------hcC-ccccHHHHHHhHHh
Confidence 5555555555422 244555555555555566666666555321 110 01123455555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHH
Q 038112 409 IQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMAL 488 (625)
Q Consensus 409 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 488 (625)
.-.+.-++|...+....+.-.. ....+-.+.--|.+.+...-|.++|.++... .+.|+..++.+.-.....+.+.+|.
T Consensus 357 a~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~ 434 (611)
T KOG1173|consen 357 AGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEAL 434 (611)
T ss_pred hhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHH
Confidence 5555556665555555443100 1111122222345555555555555555543 2333444444444444555555555
Q ss_pred HHHHHHHhC--CC----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 038112 489 KLCCQFLQK--GF----TPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWN 562 (625)
Q Consensus 489 ~~~~~~~~~--~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 562 (625)
.+|+..+.. .+ .--..+++.|+.+|.+.+.+++|+..+++.... .+.|..++..++.+|...|+++.|++.|.
T Consensus 435 ~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fh 513 (611)
T KOG1173|consen 435 KYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFH 513 (611)
T ss_pred HHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence 555554421 00 012334555555555555555555555555554 34455555555555555555555555555
Q ss_pred HHHHcCCCCCHHHHHHHH
Q 038112 563 HILEERLRPDIISYNITL 580 (625)
Q Consensus 563 ~~~~~~~~p~~~~~~~l~ 580 (625)
+++. +.|+..+-..++
T Consensus 514 KaL~--l~p~n~~~~~lL 529 (611)
T KOG1173|consen 514 KALA--LKPDNIFISELL 529 (611)
T ss_pred HHHh--cCCccHHHHHHH
Confidence 5555 555544444443
No 40
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.75 E-value=2.6e-11 Score=112.72 Aligned_cols=584 Identities=12% Similarity=0.082 Sum_probs=364.4
Q ss_pred ccCCh-hHHHHHHHhhccCCCCCCCHHHHHHHHHHhh--------CCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 038112 14 AEKNP-HTALALFDSATREPGYAHSPHLFHHILRRLI--------DPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYG 84 (625)
Q Consensus 14 ~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (625)
++|.+ ..-..+|+++++.- |.+-..|..-+..-. ...-++..-.+|++.+-.-. .-+.+|...++.+.
T Consensus 37 k~~sp~k~~~~lYERal~~l--p~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mH-kmpRIwl~Ylq~l~ 113 (835)
T KOG2047|consen 37 KAGSPDKQRNLLYERALKEL--PGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMH-KMPRIWLDYLQFLI 113 (835)
T ss_pred HccCChHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Confidence 34444 45667888888876 888888877763211 12234444555555554321 34679999999999
Q ss_pred ccCCchHHHHHHHHhHHhhCCCcch---------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHH
Q 038112 85 KNSMPDKALDVFQRMNEIFGCEAGI---------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGAL 155 (625)
Q Consensus 85 ~~~~~~~A~~~~~~~~~~~~~~~~~---------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 155 (625)
++|+...-+..|++.+...|..-.- ....+-++-+..++++.++-. +..-+-.+..+...+++++|.
T Consensus 114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHHhccchHHHH
Confidence 9999999999999987754432221 445677889999999998754 444677788889999999999
Q ss_pred HHHHHHHhCC------CCCCchhhHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCC--cchHHHHHHHHHhcCChhh
Q 038112 156 AVFDEMFERG------VETNVVCYNILIDGFFKKGDYM---RAKEIWERLVMETSVYPN--VVTYNVMINGLCKCGRFDE 224 (625)
Q Consensus 156 ~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 224 (625)
+.+....... .+.+...|..+.....+.-+.- ....++..+... -+| ...|..|...|.+.|.+++
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r---ftDq~g~Lw~SLAdYYIr~g~~ek 266 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR---FTDQLGFLWCSLADYYIRSGLFEK 266 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc---CcHHHHHHHHHHHHHHHHhhhhHH
Confidence 9999887542 2335566776666666543332 233444444443 233 2468999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHCCC----------
Q 038112 225 CLEMWDRMKKNEREKDSFTYCSFIHGLCKAG----------------------NVEGAERVYREMVESGI---------- 272 (625)
Q Consensus 225 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~~~~~~~~---------- 272 (625)
|.++|++....- .+..-|..+..+|+... +++-...-|+.+....+
T Consensus 267 arDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQ 344 (835)
T KOG2047|consen 267 ARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQ 344 (835)
T ss_pred HHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhc
Confidence 999999887542 23444555555444221 12223333444433211
Q ss_pred -CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-
Q 038112 273 -FVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL------NVVSYNILIRGLLENGKVDEAISIWELLREKNCNAD- 344 (625)
Q Consensus 273 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 344 (625)
+-+...|..-. -...|+..+-...|.++.+.-.| ....|..+...|-..|+.+.|..+|++..+-..+--
T Consensus 345 n~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 345 NPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred CCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 11222232222 22346677777777776554322 456788899999999999999999999887754321
Q ss_pred --hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCC------ccHHHHHHHHHHHHhcCCHHH
Q 038112 345 --STTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCK------LNAYTCNSLMNGFIQASKLEN 416 (625)
Q Consensus 345 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~ 416 (625)
..+|..-...-.+..+++.|..+++....-..+.. +..+ ..+.+ .+..+|...++.--..|-++.
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~---~~~y----d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE---LEYY----DNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh---hhhh----cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 23444445555677888899888886654432221 0000 11111 144566666777777889999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHhc---cCCHHHHHHHHH
Q 038112 417 AIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM-ITYSLLINGLCQ---SKKIDMALKLCC 492 (625)
Q Consensus 417 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~A~~~~~ 492 (625)
...+|+++.+..+. ++.........+..+.-++++.+++++-+..-..|+. ..|+..+..+.+ ...++.|..+|+
T Consensus 496 tk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 496 TKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999999876544 3333333333455667788888888887765333443 345555544432 336889999999
Q ss_pred HHHhCCCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 038112 493 QFLQKGFTPDVT--MYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN--LVTYNTLMDGLFKTGDCDKALEIWNHILEER 568 (625)
Q Consensus 493 ~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 568 (625)
+.++ |.+|... .|......--+-|-...|..+++++... +++. ...|+..+.-....=-+.....+|+++++
T Consensus 575 qaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe-- 650 (835)
T KOG2047|consen 575 QALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE-- 650 (835)
T ss_pred HHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--
Confidence 9998 4444322 2222233334568888889999887764 4443 34566665544443345566778888888
Q ss_pred CCCCHHHHHH---HHHHHhhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCC
Q 038112 569 LRPDIISYNI---TLKGLCSCSRMSDAFEFLNDALCR-GILPTTITWHILVRAVMNNGA 623 (625)
Q Consensus 569 ~~p~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 623 (625)
.-|+...-.. ....-.+.|..+.|..++....+. .-+.+...|.+.-..-.++|+
T Consensus 651 ~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 651 SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 4566544333 334455778888888888877653 223345567776666666665
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.75 E-value=4.1e-15 Score=142.60 Aligned_cols=287 Identities=10% Similarity=0.056 Sum_probs=180.8
Q ss_pred hhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcc-h-------hhhcCChHHH
Q 038112 48 LIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAG-I-------LCRKRQFEKA 119 (625)
Q Consensus 48 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~-------~~~~~~~~~A 119 (625)
....|+++.|.+.+....+..+ .+...+...+++....|+++.|...+.++.+..|.... + +...|+++.|
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~-~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAA-EPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3456777777777777666542 23344445566667777777777777776665555431 2 4456777777
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhH----HHHHHHHhcCChhHHHHHHHH
Q 038112 120 KRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYN----ILIDGFFKKGDYMRAKEIWER 195 (625)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~ 195 (625)
...++.+.+.. |.+..++..+...+...|++++|.+.+..+.+.++. +...+. .........+..++..+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 77777777765 556677778888888888888888888888877544 322221 111111222233323333333
Q ss_pred HHhCCC--CCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038112 196 LVMETS--VYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTY-CSFIHGLCKAGNVEGAERVYREMVESGI 272 (625)
Q Consensus 196 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 272 (625)
+.+..+ .+.+...+..++..+...|+.++|.+.+++..+..+......+ ..........++.+.+.+.++...+..+
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 333210 1236677777888888888888888888888876442221111 1122223345777888888887776632
Q ss_pred CcCH--HHHHHHHHHHHhcCCHHHHHHHHHH--HHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112 273 FVDA--VTYNAMIDGFCRAGKIKECFELWEV--MGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREK 339 (625)
Q Consensus 273 ~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (625)
. ++ .....+...+.+.|++++|.+.|+. ..+..| +...+..+...+.+.|+.++|.+++++....
T Consensus 331 ~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 331 D-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred C-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 44 5666788888888888888888884 444433 4444668888888888888888888876543
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=4.9e-16 Score=144.52 Aligned_cols=283 Identities=11% Similarity=0.039 Sum_probs=149.6
Q ss_pred CCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHH
Q 038112 51 PKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFL 123 (625)
Q Consensus 51 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~ 123 (625)
.=+..+|...|...... .+....+...++++|+..++|++|..+|+.+.+..|....- +.+..+--+---+-
T Consensus 332 ~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 34567888888884443 44456888899999999999999999999987766654332 11111111111111
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 038112 124 NSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVY 203 (625)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 203 (625)
+.+.+.+ +..+.+|-.+..+|.-+++.+.|++.|+++++.++. ...+|..+..-+.....+|.|...|+..+... +
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~--~ 486 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD--P 486 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC--c
Confidence 2222222 344455555555555555555555555555544211 34445555555555555555555555554431 2
Q ss_pred CCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 038112 204 PNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMI 283 (625)
Q Consensus 204 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 283 (625)
.+-.+|..++..|.+.++++.|.-.|++..+.++ .+......+...+.+.|+.++|+++++++...... |+..-...+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHH
Confidence 3333444455555555555555555555554443 23444444455555555555555555555544332 444444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 038112 284 DGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKN 340 (625)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 340 (625)
..+...+++++|+..++++....|.+..++..++..|.+.|+.+.|+.-|.-+...+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 455555555555555555555555555555555555555555555555555554443
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1e-14 Score=130.37 Aligned_cols=419 Identities=11% Similarity=-0.017 Sum_probs=254.5
Q ss_pred HHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCC
Q 038112 9 LNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSM 88 (625)
Q Consensus 9 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (625)
++-+...|+|++|+++|.+++... |..|..|...+-+|...|++++..+--..++..+| .....+..-+.++-..|+
T Consensus 122 GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P-~Y~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNP-DYVKALLRRASAHEQLGK 198 (606)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc-HHHHHHHHHHHHHHhhcc
Confidence 344556777888888888887766 55577777777777778888888888887777763 244566667777777777
Q ss_pred chHHHHHHHHhHHhhCCC----cchhhhcCChHHHHHHHHHHHHCCCC---CCHhHHHHHHHHHHhcCChhhHHHHHHHH
Q 038112 89 PDKALDVFQRMNEIFGCE----AGILCRKRQFEKAKRFLNSLWEKGLK---PDVYSYGTVINGLVKSGDLLGALAVFDEM 161 (625)
Q Consensus 89 ~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 161 (625)
+++|..=..-. ...... ......+.--..|..-..+-...+-+ |+..........+... .
T Consensus 199 ~~eal~D~tv~-ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~------------~ 265 (606)
T KOG0547|consen 199 FDEALFDVTVL-CILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD------------P 265 (606)
T ss_pred HHHHHHhhhHH-HHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc------------c
Confidence 77775433221 111100 00011111112222222222221111 2222222222111100 0
Q ss_pred HhCCCCCCchhhHHHHHHHHh--c---CChhHHHHHHHHHHhCCCCCCC-----------cchHHHHHHHHHhcCChhhH
Q 038112 162 FERGVETNVVCYNILIDGFFK--K---GDYMRAKEIWERLVMETSVYPN-----------VVTYNVMINGLCKCGRFDEC 225 (625)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~--~---g~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a 225 (625)
......+.......+...+.. . ..+..|.+.+.+-.......++ ..+.......+.-.|+.-.|
T Consensus 266 ~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 266 KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 000000011111112111110 1 1333444333322211101111 11233333455567889999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038112 226 LEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRK 305 (625)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 305 (625)
..-|+..+...+.+ ...|-.+...|....+.++....|......++. ++.+|..-..++.-.+++++|..-|++....
T Consensus 346 ~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 346 QEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred hhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999998776543 333777888899999999999999999887654 7888999899999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHH
Q 038112 306 GCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASL 385 (625)
Q Consensus 306 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ 385 (625)
.|.+...|..+..+..+.++++++...|++..++ ++.-+..++.....+...++++.|.+.++......+.
T Consensus 424 ~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~-------- 494 (606)
T KOG0547|consen 424 DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR-------- 494 (606)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc--------
Confidence 9999999999999999999999999999999887 3446788889999999999999999999854422110
Q ss_pred HHHHhhCCC--CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038112 386 VNRMDKHGC--KLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLE 461 (625)
Q Consensus 386 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 461 (625)
..++ .+.+.+...++..- -.+++..|..++++..+.++. ....|..|...-.+.|+.++|+++|++...
T Consensus 495 -----~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 495 -----EHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred -----cccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 0111 11222222222222 236777777777777766433 344677777777777777777777776554
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.2e-13 Score=121.19 Aligned_cols=365 Identities=12% Similarity=0.031 Sum_probs=238.4
Q ss_pred CCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCC-HhHH-HHHHHHHHh
Q 038112 70 YCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPD-VYSY-GTVINGLVK 147 (625)
Q Consensus 70 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~-~~l~~~~~~ 147 (625)
..|...+...+..+-+.|..+.|+..|-......|....++...++.-.-+.......... +.| ...- .-+..++..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l-~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGL-PSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcC-cccchHHHHHHHHHHHHH
Confidence 3456666777778888888889999988888888888887666665555555555544332 222 1111 112344445
Q ss_pred cCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHhcCChhhHH
Q 038112 148 SGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYP-NVVTYNVMINGLCKCGRFDECL 226 (625)
Q Consensus 148 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~ 226 (625)
..+.+++++-.+.....|++.+...-+..+.+.....++++|+.+|+.+.+.++..- |..+|..++ |.++.+..-
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skL-- 315 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKL-- 315 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHH--
Confidence 557788888888888888887777777777777888888888888888887643322 344565554 333332221
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038112 227 EMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKG 306 (625)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 306 (625)
..+-+-.-.-.+--+.|...+++.|.-.++.++|...|++.++.++. ....|..+.+-|....+...|++-++.+.+..
T Consensus 316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~ 394 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN 394 (559)
T ss_pred HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence 11111111101334566777777788888888888888888876543 56677778888888888888888888888888
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHH
Q 038112 307 CLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLV 386 (625)
Q Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~ 386 (625)
|.|-.+|..|+++|.-.+.+.-|+-.|++.....+. |+..|..+...|.+.++.++|++-+..
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykr---------------- 457 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKR---------------- 457 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHH----------------
Confidence 888888888888888888888888888887776433 777777777777777777777777773
Q ss_pred HHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-C-ChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038112 387 NRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRK----GCS-P-TVVSYNTLINGLCKVERFGEAYSFVKEML 460 (625)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 460 (625)
....+ +.+...+..+...|-+.++.++|...|++-.+. |.. | .......|..-+.+.+++++|..+.....
T Consensus 458 --ai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 458 --AILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred --HHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 22222 124466777777777777777777777765541 211 1 11122234444556666666665544443
No 45
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.74 E-value=1.3e-11 Score=114.62 Aligned_cols=523 Identities=12% Similarity=0.147 Sum_probs=295.8
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch----hhh
Q 038112 38 PHLFHHILRRLIDPKLVVHVSRILELIEIQKCY-CPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI----LCR 112 (625)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~ 112 (625)
|..|..-+..+..+|+...-...|..++..-|- ....+|...+......+-++.+..++++.++..|....- ++.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 455555555555555555555555555544221 123455555555555555555555555555544443222 455
Q ss_pred cCChHHHHHHHHHHHHC------CCCCCHhHHHHHHHHHHhcCChhh---HHHHHHHHHhCCCCCCchhhHHHHHHHHhc
Q 038112 113 KRQFEKAKRFLNSLWEK------GLKPDVYSYGTVINGLVKSGDLLG---ALAVFDEMFERGVETNVVCYNILIDGFFKK 183 (625)
Q Consensus 113 ~~~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (625)
.+++++|.+.+...+.. ..+.+...|..+-....++.+.-. ...+++.++..-..-=-..|..|+..|++.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 55555555555554322 113344445555444444333222 233333333321111123456666666666
Q ss_pred CChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHh----------------cC------ChhhHHHHHHHHHhCCC----
Q 038112 184 GDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCK----------------CG------RFDECLEMWDRMKKNER---- 237 (625)
Q Consensus 184 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~g------~~~~a~~~~~~~~~~~~---- 237 (625)
|.+++|..+|++....- ....-|..+-..|.. .+ +++-.+..|+.+....+
T Consensus 262 g~~ekarDvyeeai~~v---~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTV---MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred hhhHHHHHHHHHHHHhh---eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 66666666666655431 122222222222111 01 12223334444433221
Q ss_pred -------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038112 238 -------EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVD------AVTYNAMIDGFCRAGKIKECFELWEVMGR 304 (625)
Q Consensus 238 -------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (625)
+.++..|..-.. ...|+..+-...|.++++. +.|. ...|..+...|-..|+++.|..+|++..+
T Consensus 339 sVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 223444443333 3467788888888888765 2222 35688899999999999999999999988
Q ss_pred cCCCc----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-----------------hhhHHHHHHHHHhcCCHHH
Q 038112 305 KGCLN----VVSYNILIRGLLENGKVDEAISIWELLREKNCNAD-----------------STTHGVLINGLCKNGYLNK 363 (625)
Q Consensus 305 ~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------------~~~~~~l~~~~~~~~~~~~ 363 (625)
...+. ..+|...+..-.+..+++.|+++++......-.|. ...|...+..--..|-++.
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 76552 46777778888888999999998887765421111 1122222222233344444
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHH
Q 038112 364 AIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVV-SYNTLING 442 (625)
Q Consensus 364 a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~ 442 (625)
...+++ .+....+. ++.........+-...-++++.++|++-...-..|+.. .|+..+.-
T Consensus 496 tk~vYd------------------riidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 496 TKAVYD------------------RIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHH------------------HHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 444444 55554443 33333334444555667889999998877654455554 66666555
Q ss_pred Hhc---cCCHHHHHHHHHHHHHCCCCCCHhhHHHHH--HHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHc
Q 038112 443 LCK---VERFGEAYSFVKEMLEKGWKPDMITYSLLI--NGLCQSKKIDMALKLCCQFLQKGFTPD--VTMYNILIHGLCS 515 (625)
Q Consensus 443 ~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 515 (625)
+.+ ....+.|..+|+++.+ |++|...-+..++ ..-.+-|-...|+.+++++... +++. ...|+..+.--..
T Consensus 557 fi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae 634 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAE 634 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHH
Confidence 443 3468999999999998 6776544332332 2223457788899999997764 3332 3466666643333
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHccCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhhcCChH
Q 038112 516 AGKVEDALQLYSNMKKRNCVPNLVT---YNTLMDGLFKTGDCDKALEIWNHILEERLRP--DIISYNITLKGLCSCSRMS 590 (625)
Q Consensus 516 ~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~ 590 (625)
.=-+.....+|+++++. -|+... ....+..-.+.|..+.|..+|....+- .+| +...|...-..-.+.|+-+
T Consensus 635 ~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 635 IYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCHH
Confidence 22344566778888774 455433 334455567889999999999887773 344 5677777777778888843
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.73 E-value=6.1e-14 Score=133.72 Aligned_cols=286 Identities=13% Similarity=0.083 Sum_probs=175.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 038112 289 AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQIL 368 (625)
Q Consensus 289 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 368 (625)
.|+++.|.+.+.............+..........|+++.|...+.++.+....+...........+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46666666555554433211222222223334566666666666666655422211111112244556666666666666
Q ss_pred HHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-------hHHHHHH
Q 038112 369 NEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVV-------SYNTLIN 441 (625)
Q Consensus 369 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~ 441 (625)
++ +.+.. +-++.....+...|.+.|+++.|..++..+.+....++.. .|..++.
T Consensus 177 ~~------------------~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~ 237 (398)
T PRK10747 177 DK------------------LLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD 237 (398)
T ss_pred HH------------------HHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 63 22222 2245566666666777777777777777776654332211 2222233
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 038112 442 GLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVED 521 (625)
Q Consensus 442 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 521 (625)
......+.+...++++.+.+. .+.+......+...+...|+.++|.+++++..+. +|+..... +.+....++.++
T Consensus 238 ~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~ 312 (398)
T PRK10747 238 QAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQ 312 (398)
T ss_pred HHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHH
Confidence 333344455555666655443 3446667777888888888888888888888774 45553332 223335588888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 522 ALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 522 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
+++..+...+. .+.|+..+..+++.|...|++++|.+.|+.+.+ ..|+...+..+..++.+.|+.++|.+.+++.+.
T Consensus 313 al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 313 LEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888888876 355677788888888888888888888888888 778888888888888888888888888887754
No 47
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=2.3e-13 Score=116.77 Aligned_cols=444 Identities=12% Similarity=0.072 Sum_probs=286.9
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCC
Q 038112 142 INGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGR 221 (625)
Q Consensus 142 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 221 (625)
+.-+....|+..|+.+++-....+-+....+-..++.++...|++++|...|..+.... .++...+..|.-++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHH
Confidence 34456678999999999887765544444566778899999999999999999988764 5667778788888888899
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038112 222 FDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEV 301 (625)
Q Consensus 222 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 301 (625)
+.+|..+-... +.++..-..++....+.++-++-....+.+... ..--.++.......-.+++|++++..
T Consensus 107 Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 107 YIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999887665 334555556666777888877777766665432 23344556666666779999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---
Q 038112 302 MGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADS-TTHGVLINGLCKNGYLNKAIQILNEVEEGGEG--- 377 (625)
Q Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--- 377 (625)
+...++.-...-..+.-+|.+..-++-+.+++...++. -||+ ...+..+....+.=+-..|.+-..++......
T Consensus 177 vL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~ 254 (557)
T KOG3785|consen 177 VLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP 254 (557)
T ss_pred HHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch
Confidence 99877665555555677888888899999988887776 2343 33333333333322222233333333222211
Q ss_pred --------------chHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 038112 378 --------------RLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGL 443 (625)
Q Consensus 378 --------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (625)
.-+.|.+++..+... -+..-..++-.|.+.++..+|..+..++.-. ++.-|..-.-.+
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilKgvv~ 326 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILKGVVF 326 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHHHHHH
Confidence 122233333333221 2233445666788999999999988766421 222232222223
Q ss_pred hccC-------CHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 038112 444 CKVE-------RFGEAYSFVKEMLEKGWKPDMI-TYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCS 515 (625)
Q Consensus 444 ~~~~-------~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 515 (625)
+..| ...-|.+.|+-.-+.+..-|.. --.++...+.-..++++.+..+..+...-...|...+ .++++++.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHH
Confidence 3333 3445555565544444333322 2234445555667788888888887775333344444 57899999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhhcCChHHHHH
Q 038112 516 AGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIIS-YNITLKGLCSCSRMSDAFE 594 (625)
Q Consensus 516 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~ 594 (625)
.|++.+|.++|-++....++.+..-...|+++|.+.+.++-|++++-++- .+.+..+ ...++..|++++.+=-|.+
T Consensus 406 tgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaK 482 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAK 482 (557)
T ss_pred hcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888765555445555678999999999999988764442 2223333 3444578999999888888
Q ss_pred HHHHHHHCCCCCCHHHHHH
Q 038112 595 FLNDALCRGILPTTITWHI 613 (625)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~ 613 (625)
.|+.+.. +.|++..|..
T Consensus 483 AFd~lE~--lDP~pEnWeG 499 (557)
T KOG3785|consen 483 AFDELEI--LDPTPENWEG 499 (557)
T ss_pred hhhHHHc--cCCCccccCC
Confidence 8888764 4566666643
No 48
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=4.9e-14 Score=126.10 Aligned_cols=378 Identities=14% Similarity=0.102 Sum_probs=253.8
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 038112 208 TYNVMINGLCKCGRFDECLEMWDRMKKNEREKD-SFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGF 286 (625)
Q Consensus 208 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (625)
.+...+.-+.++|.+++|+++|...+.. .|+ +..|.....+|...|+|++..+--...++.++. -...+..-..++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAH 193 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHH
Confidence 4566778889999999999999999876 456 777888899999999999999998888886432 356677777888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cC--CCCChhhHHHHHHHHHh------
Q 038112 287 CRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLRE-KN--CNADSTTHGVLINGLCK------ 357 (625)
Q Consensus 287 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~------ 357 (625)
...|++.+|+.-.....-.+..+......++.-..+ ..+....++-.. .+ .-|+.....+....+..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~ 269 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLF 269 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccc
Confidence 889999988765544332222211111222221111 122222222222 21 22333333222222110
Q ss_pred --cC--------------------CHHHHHHHHHHHHhcC-----------------------------CCchHHHHHHH
Q 038112 358 --NG--------------------YLNKAIQILNEVEEGG-----------------------------EGRLADAASLV 386 (625)
Q Consensus 358 --~~--------------------~~~~a~~~~~~~~~~~-----------------------------~~~~~~a~~~~ 386 (625)
.+ .+..|...+.+-.... .++.-.+...+
T Consensus 270 ~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 270 DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 00 1122222111110000 34455555556
Q ss_pred HHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 038112 387 NRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKP 466 (625)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 466 (625)
+..+.....++ ..|-.+...|....+.++..+.|+.....++. ++.+|..-.+.+.-.+++++|..=|++.+... +.
T Consensus 350 ~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe 426 (606)
T KOG0547|consen 350 DAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PE 426 (606)
T ss_pred HHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hh
Confidence 66665544432 23666777788889999999999998887644 66677777777777889999999999998852 33
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-------HH
Q 038112 467 DMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN-------LV 539 (625)
Q Consensus 467 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~ 539 (625)
+...|..+..+..+.+.+++++..|++.+++ ++..+..|+..+..+...+++++|.+.|+..+.. .|. ..
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~ 503 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAA 503 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccch
Confidence 4566777777778889999999999999887 5667899999999999999999999999999874 333 22
Q ss_pred HH--HHHHHHHHccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 540 TY--NTLMDGLFKTGDCDKALEIWNHILEERLRPD-IISYNITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 540 ~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
.+ -.++ .+.-.+++..|..+++++++ +.|. ...+..+...-.+.|+.++|+++|++...
T Consensus 504 plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 504 PLVHKALL-VLQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhhhhhHh-hhchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 21 1222 12235899999999999999 7884 46788999999999999999999998764
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=8.3e-13 Score=120.74 Aligned_cols=455 Identities=13% Similarity=0.037 Sum_probs=243.1
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK 85 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (625)
.++-+-...|.++.-|.-+-+.+... ..+|....-+++++.-.|.++.|..+...-.-. ..+.......+.++.+
T Consensus 20 ~~~~r~~l~q~~y~~a~f~adkV~~l---~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~ 94 (611)
T KOG1173|consen 20 RRLVRDALMQHRYKTALFWADKVAGL---TNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVK 94 (611)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhc---cCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHH
Confidence 33444455677888888777765533 466777777889999899999998877766433 2467778888899999
Q ss_pred cCCchHHHHHHHHhHH------hhCCC-----------------cch---------hhhcCChHHHHHHHHHHHHCCCCC
Q 038112 86 NSMPDKALDVFQRMNE------IFGCE-----------------AGI---------LCRKRQFEKAKRFLNSLWEKGLKP 133 (625)
Q Consensus 86 ~~~~~~A~~~~~~~~~------~~~~~-----------------~~~---------~~~~~~~~~A~~~~~~~~~~~~~~ 133 (625)
..+++.|..++...+. .++.. ..+ |....++++|...|.+++..++ .
T Consensus 95 lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~-~ 173 (611)
T KOG1173|consen 95 LKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADA-K 173 (611)
T ss_pred HHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcch-h
Confidence 9999999999983311 00100 000 4455566777777777665441 1
Q ss_pred CHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC----CCchhhHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCCcch
Q 038112 134 DVYSYGTVINGLVKSGDLLGALAVFDEMFERGVE----TNVVCYNILIDGFF-KKGDYMRAKEIWERLVMETSVYPNVVT 208 (625)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~ 208 (625)
+-..+..++.... -.+.+.++.+...... .+......+..... +..+-+ ....-.. .+..+...+...
T Consensus 174 c~Ea~~~lvs~~m-----lt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~-~~~r~~~-~sl~~l~~~~dl 246 (611)
T KOG1173|consen 174 CFEAFEKLVSAHM-----LTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEE-SLTRNED-ESLIGLAENLDL 246 (611)
T ss_pred hHHHHHHHHHHHh-----cchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccc-ccccCch-hhhhhhhhcHHH
Confidence 2223333333221 1222223333222110 01111111111110 000000 0000000 000012233344
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 038112 209 YNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR 288 (625)
Q Consensus 209 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (625)
.....+-+...+++.+..++++.+.+..+ +....+..-|.++...|+..+-.-+=.++++.- +-.+.+|..++..|..
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHH
Confidence 44455566667777777777777765543 455555555666777777777666666666653 2256677777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 038112 289 AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQIL 368 (625)
Q Consensus 289 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 368 (625)
.|+..+|.+.|.+....++.-..+|..++..+.-.|..++|+..+..+-+.-+. ....+..+.--|.+.++++.|.+.|
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHH
Confidence 777777777777777776667777777777777777777777777666554211 1222223344455566666666665
Q ss_pred HHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-C-CChhhHHHHHHH
Q 038112 369 NEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRK----GC-S-PTVVSYNTLING 442 (625)
Q Consensus 369 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~-~~~~~~~~l~~~ 442 (625)
.+... . .|.|+.+.+-+.......+.+.+|..+|+..... +. . .-..+++.+..+
T Consensus 404 ~~A~a------------------i-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 404 KQALA------------------I-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHh------------------c-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 53211 1 1334455555555555555666666666554421 00 0 012234444455
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 038112 443 LCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQ 496 (625)
Q Consensus 443 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 496 (625)
+.+.+.+++|+..+++.+.. .+-+..++.+++..|...|+++.|.+.|.+.+.
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 55555555555555554443 233444445555555555555555555554443
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=3e-17 Score=149.60 Aligned_cols=262 Identities=15% Similarity=0.150 Sum_probs=75.8
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHH
Q 038112 43 HILRRLIDPKLVVHVSRILELIEIQK-CYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKR 121 (625)
Q Consensus 43 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 121 (625)
.++..+.+.|++++|.+++....... ++.+...+..++......++++.|+..++++....+.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~---------------- 76 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA---------------- 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------------
Confidence 45677777777777777775544443 4455566666666666677777777777766442221
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 038112 122 FLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETS 201 (625)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 201 (625)
++..+..++.. ...+++++|..+++...+.. +++..+..++..+...++++++.++++.+.....
T Consensus 77 ------------~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 141 (280)
T PF13429_consen 77 ------------NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA 141 (280)
T ss_dssp --------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-
T ss_pred ------------ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC
Confidence 23334444443 45555666666555554432 3444455555555566666666666665554333
Q ss_pred CCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 038112 202 VYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNA 281 (625)
Q Consensus 202 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 281 (625)
.+++...|..+...+.+.|+.++|++.+++..+..+ .|......++..+...|+.+++.++++...+.. +.++..+..
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~ 219 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDA 219 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHH
Confidence 344455555555666666666666666666655432 244555555666666666666555555554442 234445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 038112 282 MIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLR 337 (625)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 337 (625)
+..++...|+.++|+.+|+...+..|.|+.....++.++...|+.++|.++.+++.
T Consensus 220 la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 220 LAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred HHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 66666666666666666666666666666666666666666666666666555443
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=7.5e-14 Score=133.97 Aligned_cols=292 Identities=12% Similarity=0.026 Sum_probs=161.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 038112 288 RAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQI 367 (625)
Q Consensus 288 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 367 (625)
..|+++.|.+.+....+..+.+...+.....+....|+++.|.+.+.+..+..+.+...........+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34555555555555544443344444444455555555555555555554432111111222234455555555555555
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-HHHHH---H
Q 038112 368 LNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYN-TLING---L 443 (625)
Q Consensus 368 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~---~ 443 (625)
++. +.+.. |-++.+...+...+.+.|+++.|.+.+..+.+.+.. +...+. .-..+ .
T Consensus 176 l~~------------------l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 176 VDK------------------LLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGL 235 (409)
T ss_pred HHH------------------HHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHH
Confidence 552 22222 224445555666666666666666666666655432 222221 11111 1
Q ss_pred hccCCHHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHcCCCH
Q 038112 444 CKVERFGEAYSFVKEMLEKG---WKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTM-YNILIHGLCSAGKV 519 (625)
Q Consensus 444 ~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~ 519 (625)
...+..+++.+.+..+.+.. .+.+...+..++..+...|+.++|.+++++..+....+.... ...........++.
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~ 315 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDN 315 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCCh
Confidence 12222222333444444321 112566677777778888888888888888877532211111 11111222345677
Q ss_pred HHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHH
Q 038112 520 EDALQLYSNMKKRNCVPNL--VTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLN 597 (625)
Q Consensus 520 ~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 597 (625)
+.+.+.+++..+. .+.|+ .....+++.+.+.|++++|.+.|+.+......|+...+..+...+.+.|+.++|.++++
T Consensus 316 ~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 316 EKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7888888877775 34455 66778888888888888888888843332267888778888888888888888888888
Q ss_pred HHH
Q 038112 598 DAL 600 (625)
Q Consensus 598 ~~~ 600 (625)
+.+
T Consensus 395 ~~l 397 (409)
T TIGR00540 395 DSL 397 (409)
T ss_pred HHH
Confidence 764
No 52
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.71 E-value=3.9e-14 Score=135.06 Aligned_cols=279 Identities=14% Similarity=0.083 Sum_probs=200.5
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHccCCchHHHHHHHHhHHhhCCCcc--------hhhhcCChHHHH
Q 038112 50 DPKLVVHVSRILELIEIQKCYCPEDVALS-VIQAYGKNSMPDKALDVFQRMNEIFGCEAG--------ILCRKRQFEKAK 120 (625)
Q Consensus 50 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------~~~~~~~~~~A~ 120 (625)
..|+++.|++.+....+.. + .+.++.. .+....+.|+++.|...+.++.+..|.... .+...|+++.|.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~-~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA-E-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc-c-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 3688888887777655542 1 2333333 344447788888888888877665555421 156678888888
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCc-------hhhHHHHHHHHhcCChhHHHHHH
Q 038112 121 RFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNV-------VCYNILIDGFFKKGDYMRAKEIW 193 (625)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~ 193 (625)
..++++.+.+ |.++..+..+...+.+.|++++|..++..+.+.+..++. .+|..++.......+.+...++|
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888887776 667788888888888999999999999988887544222 13334444444555667777777
Q ss_pred HHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 038112 194 ERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIF 273 (625)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 273 (625)
+.+.+. .+.+......+...+...|+.++|.+++++..+. +++.... ++.+....++.+++++..+...+..+.
T Consensus 253 ~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 777554 3556777888888999999999999999888764 3444322 334444568889999999888877543
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112 274 VDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREK 339 (625)
Q Consensus 274 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (625)
|+.....+...+.+.+++++|.+.|+.+....|. ...+..+..++.+.|+.++|.+++++....
T Consensus 327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6777888899999999999999999998887644 455667888899999999999998877653
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=6.5e-17 Score=147.41 Aligned_cols=262 Identities=16% Similarity=0.128 Sum_probs=97.6
Q ss_pred HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112 7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN 86 (625)
Q Consensus 7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (625)
.+++++...|+++.|+.+++........|.++..|..++...-..++++.|.+.|++++..++. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4678899999999999999765544323778888888888888899999999999999988643 66677777777 688
Q ss_pred CCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCC-
Q 038112 87 SMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERG- 165 (625)
Q Consensus 87 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 165 (625)
+++++|..++....+ . .+++..+..++..+.+.++++.+..+++.+....
T Consensus 91 ~~~~~A~~~~~~~~~---------------------------~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 141 (280)
T PF13429_consen 91 GDPEEALKLAEKAYE---------------------------R--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA 141 (280)
T ss_dssp --------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-
T ss_pred ccccccccccccccc---------------------------c--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC
Confidence 888888888876532 1 2345556667777777888888888888766542
Q ss_pred CCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHH
Q 038112 166 VETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYC 245 (625)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 245 (625)
.+.++..|..++.++.+.|+.++|++.+++.++.. |.+......++..+...|+.+++.++++...+.. +.++..+.
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~ 218 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWD 218 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHH
Confidence 24466677777788888888888888888887763 4456677777778888888888777777766554 34556677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112 246 SFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMG 303 (625)
Q Consensus 246 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 303 (625)
.+..++...|+.++|+..|++..+..+ .|+.....++.++...|+.++|.++.+.+.
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~~p-~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKLNP-DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHT----------------
T ss_pred HHHHHhccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 778888888888888888888777532 377777788888888888888888776654
No 54
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.69 E-value=7.7e-12 Score=116.42 Aligned_cols=449 Identities=14% Similarity=0.107 Sum_probs=278.8
Q ss_pred ccCCchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHH
Q 038112 85 KNSMPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAV 157 (625)
Q Consensus 85 ~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 157 (625)
..+.|...+...+.+++.+|..+.. +...|+-++|....+..+..+ ..+.+.|..+.-.+....++++|+..
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 4445555555555555554444443 444555666666655555554 34567788888778888999999999
Q ss_pred HHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCC-
Q 038112 158 FDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNE- 236 (625)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~- 236 (625)
|..+...+. .|...|..+.-.-++.|+++........+.+. .+.....|..++.++.-.|+...|..+++...+..
T Consensus 98 y~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 98 YRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999998853 37788888888889999999999888888876 34556678889999999999999999999888754
Q ss_pred CCCChhhHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q 038112 237 REKDSFTYCSFI------HGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNV 310 (625)
Q Consensus 237 ~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 310 (625)
..|+...+.... ......|.+++|.+.+..-... +.-....-..-...+.+.+++++|..++..+....|.+.
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~ 253 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNL 253 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhH
Confidence 235555443322 3455778888888877665443 221223334456778889999999999999999999888
Q ss_pred HHHHHHHHHHHhCCCHHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHHHhcCCCchHHHHHHHHH
Q 038112 311 VSYNILIRGLLENGKVDEAI-SIWELLREKNCNADSTTHGVLINGLCKNGYLN-KAIQILNEVEEGGEGRLADAASLVNR 388 (625)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~a~~~~~~ 388 (625)
..+..+..++.+-.+.-++. .+|....+.-. .......+--......++. ..-.++. .
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~--r~e~p~Rlplsvl~~eel~~~vdkyL~------------------~ 313 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEKYP--RHECPRRLPLSVLNGEELKEIVDKYLR------------------P 313 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc--ccccchhccHHHhCcchhHHHHHHHHH------------------H
Confidence 88888888886333333333 56665554421 1111111111111111111 1222222 4
Q ss_pred HhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CC----------CCCChhhH--HHHHHHHhccCCHHHH
Q 038112 389 MDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSR----KG----------CSPTVVSY--NTLINGLCKVERFGEA 452 (625)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~~--~~l~~~~~~~~~~~~a 452 (625)
..+.|+++ ++..+...|-.-...+-..++...+.. .+ -+|....| -.++..+-..|+++.|
T Consensus 314 ~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A 390 (700)
T KOG1156|consen 314 LLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVA 390 (700)
T ss_pred HhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHH
Confidence 44555443 223333333222211111111111111 00 13444434 3456677788899999
Q ss_pred HHHHHHHHHCCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 038112 453 YSFVKEMLEKGWKPDM-ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKK 531 (625)
Q Consensus 453 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 531 (625)
..+++..+.+ .|+. ..|..-.+.+...|+++.|..++++..+.+ .+|..+-..-+.-..+.++.++|.++.....+
T Consensus 391 ~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 391 LEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred HHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhh
Confidence 9999888875 4543 345555677888889999999988888764 44555544566667788888888888888877
Q ss_pred CCCC--CC----HHHHHH--HHHHHHccCChhHHHHHHHHH
Q 038112 532 RNCV--PN----LVTYNT--LMDGLFKTGDCDKALEIWNHI 564 (625)
Q Consensus 532 ~~~~--~~----~~~~~~--l~~~~~~~g~~~~A~~~~~~~ 564 (625)
.|.. .| .-.|.. =+.+|.+.|++..|++=|..+
T Consensus 468 ~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 468 EGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred cccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 6531 01 111222 245577777777776654444
No 55
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=3.4e-14 Score=132.49 Aligned_cols=285 Identities=10% Similarity=0.022 Sum_probs=136.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCC--CCCchhhHHHHHHHHhcCChhHHHHH
Q 038112 115 QFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGV--ETNVVCYNILIDGFFKKGDYMRAKEI 192 (625)
Q Consensus 115 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~ 192 (625)
+.++|...|+++.++ .....+....+..+|...+++++|..+|+.+.+..+ --+.++|...+-.+-+ .-+--.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHHH
Confidence 344555555553222 233345555555555555555555555555554421 0133344443332211 1111111
Q ss_pred HHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038112 193 WERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGI 272 (625)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 272 (625)
-+.+.+. .+..+.+|-.++.+|.-+++.+.|++.|++..+..+ ....+|+.+..-+.....++.|...|+..+...+
T Consensus 410 aq~Li~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 1222222 133344555555555555555555555555554432 2444555555555555555555555555554321
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038112 273 FVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLI 352 (625)
Q Consensus 273 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 352 (625)
. +-..|..+...|.+.++++.|+-.|+.+...+|.+......++..+.+.|+.++|+++++++...+++ |+......+
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~ 564 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRA 564 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHH
Confidence 1 33444445555555555555555555555555555555555555555555555555555555555433 344444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038112 353 NGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRK 427 (625)
Q Consensus 353 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 427 (625)
..+...+++++|+..++++ +.. ++.+..++..+...|.+.|+.+.|..-|..+...
T Consensus 565 ~il~~~~~~~eal~~LEeL------------------k~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEEL------------------KEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHhhcchHHHHHHHHHH------------------HHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 4455555555555555522 221 1223444455555555555555555555555444
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.68 E-value=1.1e-12 Score=114.91 Aligned_cols=286 Identities=14% Similarity=0.098 Sum_probs=184.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 038112 289 AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQIL 368 (625)
Q Consensus 289 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 368 (625)
.|+|..|++...+..+.+......|..-+.+.-..|+.+.+-.++.++.+....++........+.....|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 35555555555555555444555555555555556666666666655555432333333444445555566666665555
Q ss_pred HHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-------hHHHHHH
Q 038112 369 NEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVV-------SYNTLIN 441 (625)
Q Consensus 369 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~ 441 (625)
.+ +...+ +.++.+......+|.+.|++.....++..+.+.+.-.++. +|+.+++
T Consensus 177 ~~------------------ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~ 237 (400)
T COG3071 177 DQ------------------LLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ 237 (400)
T ss_pred HH------------------HHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence 52 22222 2245556666666777777777777777776665443432 4555555
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 038112 442 GLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVED 521 (625)
Q Consensus 442 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 521 (625)
-....+..+.-...++..... .+.++..-..++.-+.+.|+.++|.++..+..+++..|+ ...+ -.+.+-++.+.
T Consensus 238 q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~ 312 (400)
T COG3071 238 QARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEP 312 (400)
T ss_pred HHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchH
Confidence 555555555555556655543 455666667777788888888888888888888766555 2122 23446677777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 522 ALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 522 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
-++..++..+. .+.++..+..|+..|.+.+.+.+|...|+.+++ ..|+..+|..+.+++.+.|+..+|.+..++.+-
T Consensus 313 l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 313 LIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 77777777765 355667888888888888888888888888887 788888888888888888888888888887763
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=3.8e-13 Score=114.13 Aligned_cols=220 Identities=17% Similarity=0.125 Sum_probs=156.3
Q ss_pred cCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHhcCChhhH
Q 038112 148 SGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNV--VTYNVMINGLCKCGRFDEC 225 (625)
Q Consensus 148 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a 225 (625)
+++.+.|.+.|-+|.+.+. -+..+...|.+.|-+.|..|+|+.+.+.+.+..+.+.+. .+...|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 5677888888888887632 255566778888888888888888888887654222221 2345567778888888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038112 226 LEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVD----AVTYNAMIDGFCRAGKIKECFELWEV 301 (625)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 301 (625)
..+|..+.+.+ +--......|+..|-...+|++|+++-+++.+.+..+. ...|..+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 88888877543 23445667788888888888888888888877754433 23355566666667778888888888
Q ss_pred HHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038112 302 MGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILN 369 (625)
Q Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 369 (625)
....++..+.+-..+.+.....|+++.|++.++.+.+.++.--+.+...+..+|...|+.++....+.
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 88877777777777888888888888888888888777554444555556666666666666666665
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.66 E-value=3.3e-12 Score=112.08 Aligned_cols=299 Identities=14% Similarity=0.118 Sum_probs=216.9
Q ss_pred hcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 038112 218 KCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFE 297 (625)
Q Consensus 218 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 297 (625)
-.|+|..|.+...+-.+.+..| ...|..-+++.-+.|+.+.+-.++.++.+....++........+.....|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3688888888888876665432 344555667777888888888888888776445566666777778888888888888
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038112 298 LWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEG 377 (625)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 377 (625)
-+..+....|.++........+|.+.|++.+...++..+.+.+.-.++..-..
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l--------------------------- 227 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL--------------------------- 227 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH---------------------------
Confidence 88888888888888888888888888888888888888888765533322110
Q ss_pred chHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHH
Q 038112 378 RLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVK 457 (625)
Q Consensus 378 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 457 (625)
...+|..+++-....+..+.-...++....+ ...++..-..++.-+.+.|+.++|.++..
T Consensus 228 -------------------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~ 287 (400)
T COG3071 228 -------------------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIE 287 (400)
T ss_pred -------------------HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHH
Confidence 1224444544444444444544555555432 23355666677777888889999998888
Q ss_pred HHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 038112 458 EMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN 537 (625)
Q Consensus 458 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 537 (625)
+..+++..|. +. ..-.+.+-++...-.+..++..+. .+.++..+..|+..|.+.+.|.+|...|+...+ ..|+
T Consensus 288 ~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s 360 (400)
T COG3071 288 DALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPS 360 (400)
T ss_pred HHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCC
Confidence 8888766655 21 222356677777777777777665 244668888999999999999999999998887 4789
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 038112 538 LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP 571 (625)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 571 (625)
..+|+.++.++.+.|++.+|.+..++.+..-..|
T Consensus 361 ~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 361 ASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999988887543344
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.65 E-value=2e-10 Score=109.55 Aligned_cols=436 Identities=11% Similarity=0.017 Sum_probs=249.8
Q ss_pred CCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcch
Q 038112 129 KGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVT 208 (625)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 208 (625)
..+..|...|..+.-++...|+++.+.+.|++....-+ .....|..+..++...|.-..|..+++........+++...
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 34456778888888888888888888888888876533 25677888888888888888888888876655422344444
Q ss_pred HHHHHHHHH-hcCChhhHHHHHHHHHhC--CC--CCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCC
Q 038112 209 YNVMINGLC-KCGRFDECLEMWDRMKKN--ER--EKDSFTYCSFIHGLCKA-----------GNVEGAERVYREMVESGI 272 (625)
Q Consensus 209 ~~~l~~~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~ 272 (625)
+-..-..|. +.+..++++++..++... +. ...+..|..+.-+|... ....++++.+++.++.+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 444334444 346777777777666541 11 12334454444444321 124567777888877654
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 038112 273 FVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVL 351 (625)
Q Consensus 273 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 351 (625)
. |+.+...+.--|+..++++.|.+..++....++ .++.+|..++-++...+++.+|+.+.+.....-.. +......-
T Consensus 476 ~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~ 553 (799)
T KOG4162|consen 476 T-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGK 553 (799)
T ss_pred C-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhh
Confidence 3 666666777778888888888888888888744 48888888888888888888888888777654111 12222222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC
Q 038112 352 INGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRK--GC 429 (625)
Q Consensus 352 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~ 429 (625)
+..-...++.+++......+..- ++.. +. ....++-....+....+.-. ..
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~-----------we~~------~~----------~q~~~~~g~~~~lk~~l~la~~q~ 606 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLAL-----------WEAE------YG----------VQQTLDEGKLLRLKAGLHLALSQP 606 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHH-----------HHhh------hh----------HhhhhhhhhhhhhhcccccCcccc
Confidence 23333456666666555533210 0000 00 00001111111111111110 11
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC--C------HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 038112 430 SPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKP--D------MITYSLLINGLCQSKKIDMALKLCCQFLQKGFTP 501 (625)
Q Consensus 430 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 501 (625)
...+.++..+.......+........ +...-..| + ...|......+.+.++.++|...+.+..... +.
T Consensus 607 ~~a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l 682 (799)
T KOG4162|consen 607 TDAISTSRYLSSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PL 682 (799)
T ss_pred cccchhhHHHHHHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hh
Confidence 11111222222111110000000000 11111111 1 1234445555666677777776666666542 33
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHH--HHHHHHHcCCCC-CHHHHHH
Q 038112 502 DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALE--IWNHILEERLRP-DIISYNI 578 (625)
Q Consensus 502 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p-~~~~~~~ 578 (625)
....|...+..+...|.+++|...|......+ |.++.+...++.++...|+..-|.. ++..+++ +.| +++.|..
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~ 759 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYY 759 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHH
Confidence 45566666666777777777777777776642 2335666777777777777666666 7777777 556 5577777
Q ss_pred HHHHHhhcCChHHHHHHHHHHHH
Q 038112 579 TLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 579 l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
+...+.+.|+.+.|.+-|....+
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHh
Confidence 77777777777777777776654
No 60
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.64 E-value=8.1e-11 Score=109.82 Aligned_cols=459 Identities=12% Similarity=0.112 Sum_probs=309.6
Q ss_pred hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHH
Q 038112 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA 189 (625)
Q Consensus 110 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 189 (625)
.+..+++...++..+.+++. .+....+.....-.+...|+.++|........+.++. +.++|..++-.+....++++|
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHH
Confidence 34578899999999999884 3445555555555667789999999999998887655 889999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038112 190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVE 269 (625)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 269 (625)
++.|..+...+ +.|...|..+.-.-.+.++++.....-.+..+..+ .....|..++.++.-.|+...|..+++...+
T Consensus 95 iKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 95 IKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998863 56777888888888889999998888887776543 3556788889999999999999999999887
Q ss_pred CC-CCcCHHHHHHH------HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 038112 270 SG-IFVDAVTYNAM------IDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCN 342 (625)
Q Consensus 270 ~~-~~~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 342 (625)
.. -.|+...+... .....+.|.+++|.+.+......-......-..-...+.+.+++++|..++..++.. .
T Consensus 172 t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--n 249 (700)
T KOG1156|consen 172 TQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--N 249 (700)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--C
Confidence 64 24555554332 234567788899988887766554444555556677888999999999999999998 4
Q ss_pred CChhhHHHH-HHHHHhcCCHHHHH-HHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 038112 343 ADSTTHGVL-INGLCKNGYLNKAI-QILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFL 420 (625)
Q Consensus 343 ~~~~~~~~l-~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 420 (625)
||...|... ..++.+..+.-++. .++....+ . .+........-+.......-.+....+
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~------------------~-y~r~e~p~Rlplsvl~~eel~~~vdky 310 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSE------------------K-YPRHECPRRLPLSVLNGEELKEIVDKY 310 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh------------------c-CcccccchhccHHHhCcchhHHHHHHH
Confidence 555555544 44443222222222 44442211 1 110100001111111112223444556
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH----CC----------CCCCHh--hHHHHHHHHhccCCH
Q 038112 421 FKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLE----KG----------WKPDMI--TYSLLINGLCQSKKI 484 (625)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~--~~~~l~~~~~~~~~~ 484 (625)
+....+.|+++ ++..+...|-.-...+-..++...+.. .| -+|... ++..++..+-..|++
T Consensus 311 L~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~ 387 (700)
T KOG1156|consen 311 LRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDY 387 (700)
T ss_pred HHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccH
Confidence 66666766543 233333333222222211111111111 11 134433 344567778899999
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 038112 485 DMALKLCCQFLQKGFTPD-VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNH 563 (625)
Q Consensus 485 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 563 (625)
+.|...++..+++ .|+ +..|..-++.+...|++++|..++++..+.+ .+|..+-..-+.-..+.++.++|.++...
T Consensus 388 ~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~sk 464 (700)
T KOG1156|consen 388 EVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSK 464 (700)
T ss_pred HHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 9999999999886 455 4566667788999999999999999999874 55666655778888899999999999998
Q ss_pred HHHcCCCC-----CHH-HHHHH--HHHHhhcCChHHHHHHHHHHH
Q 038112 564 ILEERLRP-----DII-SYNIT--LKGLCSCSRMSDAFEFLNDAL 600 (625)
Q Consensus 564 ~~~~~~~p-----~~~-~~~~l--~~~~~~~g~~~~A~~~~~~~~ 600 (625)
..+.|... +.. .|..+ +.+|.+.|++-+|++=|...-
T Consensus 465 FTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 465 FTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 88866421 111 23333 347888888888887666553
No 61
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=2.2e-12 Score=109.54 Aligned_cols=291 Identities=16% Similarity=0.126 Sum_probs=222.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCHHHH
Q 038112 288 RAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNAD---STTHGVLINGLCKNGYLNKA 364 (625)
Q Consensus 288 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 364 (625)
-+++.++|.+.|-+|.+.++....+...|.+.|.+.|..|.|+++...+.+...-+. ......+..-|...|-++.|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 457788999999999998888888889999999999999999999888877621111 12234566778889999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh----hHHHHH
Q 038112 365 IQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVV----SYNTLI 440 (625)
Q Consensus 365 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~ 440 (625)
+.+|..+ ...+ .--......++..|-...+|++|+++-+++.+.+..+... .|.-+.
T Consensus 127 E~~f~~L------------------~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELA 187 (389)
T COG2956 127 EDIFNQL------------------VDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELA 187 (389)
T ss_pred HHHHHHH------------------hcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence 9998843 3221 1134466778899999999999999999998876544322 455666
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHH
Q 038112 441 NGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVE 520 (625)
Q Consensus 441 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 520 (625)
..+....+.+.|..++.+..+.+ +.....-..+.+.....|+++.|.+.++.+.+.+..--..+...|..+|...|+.+
T Consensus 188 q~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 188 QQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred HHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 66777889999999999998863 23445556778889999999999999999999765555678889999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh---hcCChHHHHHHHH
Q 038112 521 DALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLC---SCSRMSDAFEFLN 597 (625)
Q Consensus 521 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~ 597 (625)
+....+.++.+. .+....-..+...-....-.+.|..++.+-+. -+|+...+..++..-. .-|+..+.+..++
T Consensus 267 ~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr 342 (389)
T COG2956 267 EGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLR 342 (389)
T ss_pred HHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHH
Confidence 999999999986 34555555666655555556777777766666 5899999998887544 2366888888999
Q ss_pred HHHHC
Q 038112 598 DALCR 602 (625)
Q Consensus 598 ~~~~~ 602 (625)
+|+..
T Consensus 343 ~mvge 347 (389)
T COG2956 343 DMVGE 347 (389)
T ss_pred HHHHH
Confidence 98743
No 62
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.61 E-value=1.5e-10 Score=110.33 Aligned_cols=422 Identities=13% Similarity=0.035 Sum_probs=281.3
Q ss_pred CCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhh-
Q 038112 165 GVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFT- 243 (625)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~- 243 (625)
.+..++..|..+.-++...|+++.+.+.|++.... .......|..+...+...|.-..|..+++........|+..+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 35567888888888999999999999999998654 334556789999999999999999999988765543344333
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CcCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCC
Q 038112 244 YCSFIHGLC-KAGNVEGAERVYREMVES--GI--FVDAVTYNAMIDGFCRA-----------GKIKECFELWEVMGRKGC 307 (625)
Q Consensus 244 ~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~ 307 (625)
+......|. +.+.+++++.+-.+++.. +. ...+..+..+.-+|... ....++++.+++..+.++
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 333333333 457788888877777662 11 11334444444444432 124678888999999999
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 038112 308 LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVN 387 (625)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~ 387 (625)
.|+.+...+..-|+..++.+.|.+..++....+..-+...|..+.-.+...+++..|+.+.+....
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~-------------- 541 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE-------------- 541 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--------------
Confidence 999999999999999999999999999999987777899999999999999999999999985332
Q ss_pred HHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC--CCC
Q 038112 388 RMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEK--GWK 465 (625)
Q Consensus 388 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~ 465 (625)
..+. |-.....-+..-...++.+++......+... +. +.... ...++-...++....+.-. ...
T Consensus 542 ---E~~~--N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~-we-~~~~~-------q~~~~~g~~~~lk~~l~la~~q~~ 607 (799)
T KOG4162|consen 542 ---EFGD--NHVLMDGKIHIELTFNDREEALDTCIHKLAL-WE-AEYGV-------QQTLDEGKLLRLKAGLHLALSQPT 607 (799)
T ss_pred ---Hhhh--hhhhchhhhhhhhhcccHHHHHHHHHHHHHH-HH-hhhhH-------hhhhhhhhhhhhhcccccCccccc
Confidence 1111 1111111122223356777776666655431 00 00000 0111122222222222111 011
Q ss_pred CCHhhHHHHHHHHh-cc--CCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 038112 466 PDMITYSLLINGLC-QS--KKIDMALKLCCQFLQKGFTPD------VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVP 536 (625)
Q Consensus 466 ~~~~~~~~l~~~~~-~~--~~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 536 (625)
-...++..+..-.. +. -..+.. +...... ..|+ ...|......+.+.++.++|...+.++... .+-
T Consensus 608 ~a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~-~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l 682 (799)
T KOG4162|consen 608 DAISTSRYLSSLVASQLKSAGSELK---LPSSTVL-PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPL 682 (799)
T ss_pred ccchhhHHHHHHHHhhhhhcccccc---cCccccc-CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chh
Confidence 11222222222111 11 111111 1111111 1222 345666778888999999999999999886 455
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhhcCChHHHHH--HHHHHHHCCCCCCHHHHHH
Q 038112 537 NLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI-ISYNITLKGLCSCSRMSDAFE--FLNDALCRGILPTTITWHI 613 (625)
Q Consensus 537 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~ 613 (625)
....|...+..+...|..++|.+.|..++. +.|+. .....++.++.+.|+..-|.. ++..+++.+ +.+...|-.
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~ 759 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYY 759 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 788889999999999999999999999999 88955 788999999999998887777 999999754 235678889
Q ss_pred HHHHHHhcCCC
Q 038112 614 LVRAVMNNGAS 624 (625)
Q Consensus 614 l~~~~~~~g~~ 624 (625)
+...+...|++
T Consensus 760 LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 760 LGEVFKKLGDS 770 (799)
T ss_pred HHHHHHHccch
Confidence 98888888875
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.60 E-value=3.6e-13 Score=134.35 Aligned_cols=251 Identities=11% Similarity=-0.020 Sum_probs=140.9
Q ss_pred CChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhh---------CCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112 16 KNPHTALALFDSATREPGYAHSPHLFHHILRRLI---------DPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN 86 (625)
Q Consensus 16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (625)
+++++|+..|+.+++.+ |.++.++..++.++. ..+++++|...++++++.+| .+...+..++.++...
T Consensus 275 ~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHc
Confidence 34567777777777766 666766666665443 22346777777777777763 3666666777777777
Q ss_pred CCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 038112 87 SMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGV 166 (625)
Q Consensus 87 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 166 (625)
|++++|...|+++.+.. |.+...+..+...+...|++++|+..++++.+.++
T Consensus 352 g~~~~A~~~~~~Al~l~----------------------------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P 403 (553)
T PRK12370 352 SEYIVGSLLFKQANLLS----------------------------PISADIKYYYGWNLFMAGQLEEALQTINECLKLDP 403 (553)
T ss_pred cCHHHHHHHHHHHHHhC----------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 77777777777664433 33455566666666667777777777777666633
Q ss_pred CCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHH
Q 038112 167 ETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYP-NVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYC 245 (625)
Q Consensus 167 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 245 (625)
. +...+..++..+...|++++|+..++++.... +| +...+..+..++...|++++|...++++....+ .+....+
T Consensus 404 ~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~ 479 (553)
T PRK12370 404 T-RAAAGITKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVN 479 (553)
T ss_pred C-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHH
Confidence 2 22233333444555666777777766665442 23 233455566666667777777777666554321 1223334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038112 246 SFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRK 305 (625)
Q Consensus 246 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 305 (625)
.+...|...| +.|...++.+.+..-. ...........|.-.|+.+.+..+ +++.+.
T Consensus 480 ~l~~~~~~~g--~~a~~~l~~ll~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 480 LLYAEYCQNS--ERALPTIREFLESEQR-IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHhccH--HHHHHHHHHHHHHhhH-hhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 4444555555 3555555555443100 111111133444555555555554 555544
No 64
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.57 E-value=5.1e-11 Score=114.42 Aligned_cols=288 Identities=14% Similarity=0.156 Sum_probs=213.0
Q ss_pred HHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc--
Q 038112 9 LNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN-- 86 (625)
Q Consensus 9 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 86 (625)
..++..+|++++|+..+......- ..........+..+.+.|+.++|..+|..+++++| .+...+..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I--~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQI--LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcc
Confidence 378889999999999998855443 56667778889999999999999999999999985 4666777777766333
Q ss_pred ---CCchHHHHHHHHhHHhhCCCcch------hhhcCChH-HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHH
Q 038112 87 ---SMPDKALDVFQRMNEIFGCEAGI------LCRKRQFE-KAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALA 156 (625)
Q Consensus 87 ---~~~~~A~~~~~~~~~~~~~~~~~------~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 156 (625)
...+.-.++|+.+...+|..... +.....|. .+..++...+..|+| .+|..+-..|..........+
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 25677788899887777765444 33333443 455667777777753 355666555655555555556
Q ss_pred HHHHHHhC----C----------CCCCc--hhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcC
Q 038112 157 VFDEMFER----G----------VETNV--VCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCG 220 (625)
Q Consensus 157 ~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 220 (625)
++...... + -+|+. .++..++..|...|++++|++.++..+... |..+..|..-...+-+.|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCC
Confidence 66655432 1 12333 245667888889999999999999998863 344667888899999999
Q ss_pred ChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH--------HHHHHHHHHHHhcCCH
Q 038112 221 RFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDA--------VTYNAMIDGFCRAGKI 292 (625)
Q Consensus 221 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~ 292 (625)
++.+|.+.++....... .|...-+..+..+.+.|++++|.+++......+..|.. ......+.+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999987764 46777777888899999999999999999877643322 1224467789999999
Q ss_pred HHHHHHHHHHHhc
Q 038112 293 KECFELWEVMGRK 305 (625)
Q Consensus 293 ~~a~~~~~~~~~~ 305 (625)
..|++.|..+.+.
T Consensus 322 ~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 322 GLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888776543
No 65
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=2.2e-10 Score=109.66 Aligned_cols=526 Identities=12% Similarity=0.104 Sum_probs=306.6
Q ss_pred ccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHc
Q 038112 14 AEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQK--------CYCPEDVALSVIQAYGK 85 (625)
Q Consensus 14 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~ 85 (625)
.-|+.+.|.+..+. -.+..+|..+++.+.+-++.+-|.-++..|.... ...+...-..++.....
T Consensus 740 tiG~MD~AfksI~~-------IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAie 812 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQF-------IKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIE 812 (1416)
T ss_pred EeccHHHHHHHHHH-------HhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHH
Confidence 34888888877766 3457889999999999888888877766664321 11122444556666678
Q ss_pred cCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHH---
Q 038112 86 NSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMF--- 162 (625)
Q Consensus 86 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--- 162 (625)
.|..++|..+|.+. +.+...-..|...|.+++|.++-+.=-... -..+|.....-+...+|.+.|++.|++.-
T Consensus 813 LgMlEeA~~lYr~c-kR~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~ha 888 (1416)
T KOG3617|consen 813 LGMLEEALILYRQC-KRYDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHA 888 (1416)
T ss_pred HhhHHHHHHHHHHH-HHHHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChH
Confidence 89999999999987 444444445778899999988876533222 23456666676777888888888887532
Q ss_pred -------hCC---------CCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHH
Q 038112 163 -------ERG---------VETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECL 226 (625)
Q Consensus 163 -------~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 226 (625)
... -..|...|......+...|+.+.|+.+|.... -|-.+++..+-.|+.++|-
T Consensus 889 fev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~----------D~fs~VrI~C~qGk~~kAa 958 (1416)
T KOG3617|consen 889 FEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK----------DYFSMVRIKCIQGKTDKAA 958 (1416)
T ss_pred HHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh----------hhhhheeeEeeccCchHHH
Confidence 111 12255667777777778899999998887653 3556777888889999998
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---------------CC
Q 038112 227 EMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA---------------GK 291 (625)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------~~ 291 (625)
++-++- .|......+.+.|-..|++.+|...|.+... +...++.|-.+ .+
T Consensus 959 ~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d 1023 (1416)
T KOG3617|consen 959 RIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSD 1023 (1416)
T ss_pred HHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchh
Confidence 887763 4666677789999999999999998877643 22222222222 22
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHH--------HHHc--CCCCChhhHHHHHHHHHhcCCH
Q 038112 292 IKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWEL--------LREK--NCNADSTTHGVLINGLCKNGYL 361 (625)
Q Consensus 292 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~~--~~~~~~~~~~~l~~~~~~~~~~ 361 (625)
.-.|-.+|++... -...-...|-+.|.+.+|+++--. ++.. +...|+...+.....+....++
T Consensus 1024 ~v~aArYyEe~g~-------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qy 1096 (1416)
T KOG3617|consen 1024 LVSAARYYEELGG-------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQY 1096 (1416)
T ss_pred HHHHHHHHHHcch-------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHH
Confidence 2333344443321 122334556677777777665321 1222 3344666777777778888888
Q ss_pred HHHHHHHHHHHhcC-------CCchHHHHHHHHHHhhCC-CCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038112 362 NKAIQILNEVEEGG-------EGRLADAASLVNRMDKHG-CKLN----AYTCNSLMNGFIQASKLENAIFLFKEMSRKGC 429 (625)
Q Consensus 362 ~~a~~~~~~~~~~~-------~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 429 (625)
++|..++-...+-. ..+..-..++-+.|.... ..|+ ..+...+...|.+.|.+..|-+-|.+.-.+
T Consensus 1097 ekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK-- 1174 (1416)
T KOG3617|consen 1097 EKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK-- 1174 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH--
Confidence 88888876543321 111111111111221111 1222 234566777888888888887777665331
Q ss_pred CCChhhHHHHHHHHhccCCHHHH----------------HHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 038112 430 SPTVVSYNTLINGLCKVERFGEA----------------YSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQ 493 (625)
Q Consensus 430 ~~~~~~~~~l~~~~~~~~~~~~a----------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 493 (625)
...++++.+.|+.++. -.+++. .++..++.+...++..|.+..-++.--..|+.
T Consensus 1175 -------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQt---lDWq~~pq~mK~I~tFYTKgqafd~LanFY~~ 1244 (1416)
T KOG3617|consen 1175 -------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQT---LDWQDNPQTMKDIETFYTKGQAFDHLANFYKS 1244 (1416)
T ss_pred -------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhh---cccccChHHHhhhHhhhhcchhHHHHHHHHHH
Confidence 1223444455554431 222221 12344455555554444443333322222222
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----------ccCChhHHHHHHH
Q 038112 494 FLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLF-----------KTGDCDKALEIWN 562 (625)
Q Consensus 494 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~g~~~~A~~~~~ 562 (625)
...- ...-|..+-. ..|-.++|.+.+.++...+ .....++.|-.-.. -..|....+.-..
T Consensus 1245 cAqi----Eiee~q~ydK---a~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~ 1315 (1416)
T KOG3617|consen 1245 CAQI----EIEELQTYDK---AMGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCT 1315 (1416)
T ss_pred HHHh----hHHHHhhhhH---HhHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 2110 1111211111 1234555556665555432 11222222211111 1236666667777
Q ss_pred HHHHcCCCCC----HHHHHHHHHHHhhcCChHHHHHHHHHHHHCC
Q 038112 563 HILEERLRPD----IISYNITLKGLCSCSRMSDAFEFLNDALCRG 603 (625)
Q Consensus 563 ~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (625)
.+++...-|| ...|..++..+....++..|.+.+++|..+-
T Consensus 1316 ~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1316 TLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred HHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 7777544443 3577888899999999999999999998654
No 66
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=7.4e-10 Score=102.40 Aligned_cols=456 Identities=13% Similarity=0.075 Sum_probs=229.1
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHH
Q 038112 112 RKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKE 191 (625)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 191 (625)
..|++++|.+...+++..+ |.+...+..-+.++.+.+.+++|+.+.+.-... ..+...+..-+-|+.+.+..++|+.
T Consensus 24 ~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk 100 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALK 100 (652)
T ss_pred cchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHH
Confidence 4455555555555555554 445555666666667777777777444432211 1111111233445556777777777
Q ss_pred HHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038112 192 IWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNERE-KDSFTYCSFIHGLCKAGNVEGAERVYREMVES 270 (625)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 270 (625)
.++-+. +.+..+...-...+.+.|++++|+++|+.+.+.+.+ .+...-..++.+-. ...+. +.+.. ..
T Consensus 101 ~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v-~~ 169 (652)
T KOG2376|consen 101 TLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSV-PE 169 (652)
T ss_pred HHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhc-cC
Confidence 666221 122335555566677777777777777777654321 11111111111100 00111 11111 11
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------Cc--------HHHHHHHHHHHHhCCCHHHHHHHHHH
Q 038112 271 GIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-------LN--------VVSYNILIRGLLENGKVDEAISIWEL 335 (625)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~ 335 (625)
-...+...+......+...|++.+|+++++...+.+. .+ ..+...+..++...|+.++|..++..
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 1111233344455566677777777777776622110 01 11233455666677888888888887
Q ss_pred HHHcCCCCChhhHHHHHH---HHHhcCCH-H-HHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHH-HHHHHHHH
Q 038112 336 LREKNCNADSTTHGVLIN---GLCKNGYL-N-KAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTC-NSLMNGFI 409 (625)
Q Consensus 336 ~~~~~~~~~~~~~~~l~~---~~~~~~~~-~-~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~ 409 (625)
.+...+. |........+ +.....++ + .++..++.... ...+.... .+... ....... +.++..
T Consensus 250 ~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~---~l~~~~l~---~Ls~~--qk~~i~~N~~lL~l-- 318 (652)
T KOG2376|consen 250 IIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVF---KLAEFLLS---KLSKK--QKQAIYRNNALLAL-- 318 (652)
T ss_pred HHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHH---HhHHHHHH---HHHHH--HHHHHHHHHHHHHH--
Confidence 7777533 4433222222 11111111 1 11111111000 00000000 11100 0011111 122222
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh--ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHH
Q 038112 410 QASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLC--KVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMA 487 (625)
Q Consensus 410 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 487 (625)
..+..+.+.++...+... .|. ..+..++.... +......+..++...-+....-...+....+......|+++.|
T Consensus 319 ~tnk~~q~r~~~a~lp~~--~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 319 FTNKMDQVRELSASLPGM--SPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred HhhhHHHHHHHHHhCCcc--Cch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 234445555544443322 222 23333333322 2224677777777776642222244555666777889999999
Q ss_pred HHHHH--------HHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHccCC
Q 038112 488 LKLCC--------QFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKR------NCVPNLVTYNTLMDGLFKTGD 553 (625)
Q Consensus 488 ~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~ 553 (625)
.+++. .+.+.+.. +.+...+...+.+.++-+.|..++.+.+.- +-..-..++..++..-.+.|+
T Consensus 396 ~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 99998 55554433 344555666777777766676666665532 111113345555566667899
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 038112 554 CDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDA 599 (625)
Q Consensus 554 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 599 (625)
.++|..+++++.+. -++|..+...++.+|++. +.+.|..+-+.+
T Consensus 474 ~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 474 EEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 99999999999983 234778888888888775 567777776655
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=1.5e-12 Score=110.64 Aligned_cols=224 Identities=11% Similarity=0.012 Sum_probs=147.0
Q ss_pred hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHH
Q 038112 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA 189 (625)
Q Consensus 110 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 189 (625)
|.+.|-+.+|.+.|+..+..- |-+.+|..+..+|.+..+...|+.+|.+..+. .|-|+....-+++.+...++.++|
T Consensus 233 ylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~a 309 (478)
T KOG1129|consen 233 YLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQEDA 309 (478)
T ss_pred HHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHHH
Confidence 566667777777776666653 55666666677777777777777777766665 343444445566666667777777
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038112 190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVE 269 (625)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 269 (625)
.++|+...+.. +.++.+...+...|.-.++.+-|+..++++++.|+ .++..|+.+.-+|.-.++++-++..|.+.+.
T Consensus 310 ~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAls 386 (478)
T KOG1129|consen 310 LQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALS 386 (478)
T ss_pred HHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHh
Confidence 77777766653 44555555555666666777777777777777665 3666677777777777777777777666665
Q ss_pred CCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112 270 SGIFV--DAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREK 339 (625)
Q Consensus 270 ~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (625)
..-.| -..+|..+.......|++..|...|+.....++....+++.|...-.+.|++++|..++......
T Consensus 387 tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 387 TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 43222 24566666666666777777777777777666667777777777777777777777776666554
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.4e-09 Score=93.64 Aligned_cols=293 Identities=14% Similarity=0.107 Sum_probs=221.3
Q ss_pred cCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 038112 254 AGNVEGAERVYREMVES-GIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISI 332 (625)
Q Consensus 254 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 332 (625)
.++...+...+-.+... -++-+......+..++...|+.++|+..|+.....+|.+..........+...|+.+....+
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHH
Confidence 34444444444333322 24557788888999999999999999999999998888888888888888899999998888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcC
Q 038112 333 WELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQAS 412 (625)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 412 (625)
...+.... ......|..-+.......+++.|+.+-++ .++... .+...+-.-...+...+
T Consensus 289 ~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK------------------~I~~~~-r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 289 MDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEK------------------CIDSEP-RNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHH------------------HhccCc-ccchHHHhccHHHHhcc
Confidence 88777653 11333444445566677788888877774 333221 23444545556788899
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHH-HHHhcc-CCHHHHHHH
Q 038112 413 KLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLI-NGLCQS-KKIDMALKL 490 (625)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~-~~~~~A~~~ 490 (625)
+.++|.-.|+...... +-+..+|..++..|...|++.+|..+-+...+. ++.+..++..+. ..|.-. .--++|.++
T Consensus 349 R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred chHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 9999999999988763 237789999999999999999999888877664 455666666663 333332 234789999
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 038112 491 CCQFLQKGFTPD-VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERL 569 (625)
Q Consensus 491 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 569 (625)
+++.+.. .|+ ....+.++..+...|..++++.++++... ..||....+.|+..+...+.+.+|...|..++. +
T Consensus 427 ~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~ 500 (564)
T KOG1174|consen 427 AEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--Q 500 (564)
T ss_pred HHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--c
Confidence 9988875 454 56778888999999999999999999988 478999999999999999999999999999998 7
Q ss_pred CCCHH
Q 038112 570 RPDII 574 (625)
Q Consensus 570 ~p~~~ 574 (625)
.|+..
T Consensus 501 dP~~~ 505 (564)
T KOG1174|consen 501 DPKSK 505 (564)
T ss_pred Cccch
Confidence 88543
No 69
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.54 E-value=7.2e-10 Score=108.60 Aligned_cols=555 Identities=13% Similarity=0.023 Sum_probs=303.5
Q ss_pred cCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHH
Q 038112 15 EKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALD 94 (625)
Q Consensus 15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 94 (625)
.++...|+..|-++++.+ +.-..+|..++..|..-.+...|.++|..+-..+ +.+.......+..|++..+++.|..
T Consensus 471 rK~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHH
Confidence 356788999999999988 8889999999999998889999999999999987 4577888899999999999999998
Q ss_pred HHHHhHH---------hhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 038112 95 VFQRMNE---------IFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERG 165 (625)
Q Consensus 95 ~~~~~~~---------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 165 (625)
..-...+ .|+...-.+...+++-.|...|+..+..+ |.|...|..++.+|.+.|++..|+++|.++...+
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 8444322 23332333778899999999999999887 6788999999999999999999999999988763
Q ss_pred CCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-----CCcchHHHHHHHHHhcCChhhHHHHHHHHH-------
Q 038112 166 VETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVY-----PNVVTYNVMINGLCKCGRFDECLEMWDRMK------- 233 (625)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------- 233 (625)
+. +...-.-.....+..|.+.+|...+..+....... .-..++-.+...+...|-..+|..+++..+
T Consensus 627 P~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 627 PL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred cH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 22 22333334455667899999999988876542100 011122222233333444444444444332
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHH------HHHHHH-HHHHHCCCC--------------------cCHHHHHHHHHHH
Q 038112 234 KNEREKDSFTYCSFIHGLCKAGNVE------GAERVY-REMVESGIF--------------------VDAVTYNAMIDGF 286 (625)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~-~~~~~~~~~--------------------~~~~~~~~l~~~~ 286 (625)
......+...|..+..+|.-.-..+ ....++ .+....+.- .+..+|..++..|
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINY 785 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHH
Confidence 2111112222222222211000000 000011 111111111 1223344444333
Q ss_pred Hh----c----CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 038112 287 CR----A----GKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKN 358 (625)
Q Consensus 287 ~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 358 (625)
.+ . .+...|+..+....+....+...|+.|... ...|.+.-+...|-+.....+. ...+|..+.-.+...
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheeccceeEEec
Confidence 33 1 122345555555555555566666665554 4445555555555444443222 444555555566666
Q ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCChh
Q 038112 359 GYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSR----KGCSPTVV 434 (625)
Q Consensus 359 ~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~ 434 (625)
.+++.|...|.... .. .|.+...|-.....-...|+.-++..+|..-.. .|-.++..
T Consensus 864 ~d~E~A~~af~~~q------------------SL-dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~ 924 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQ------------------SL-DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQ 924 (1238)
T ss_pred ccHHHhhHHHHhhh------------------hc-CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhh
Confidence 66666666665322 22 222444454444444455666666666554211 12233333
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHC---------CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCHH
Q 038112 435 SYNTLINGLCKVERFGEAYSFVKEMLEK---------GWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQK-GFTPDVT 504 (625)
Q Consensus 435 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~ 504 (625)
.|-.........|+.++-+...+++... +.+.+...|...+....+.+.+..|.++..+.+.. ...-+..
T Consensus 925 Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~s 1004 (1238)
T KOG1127|consen 925 YWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDES 1004 (1238)
T ss_pred HHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333333444555555444333332211 22333445555555555556666665555554320 0011222
Q ss_pred HHH----HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH----HHH
Q 038112 505 MYN----ILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI----ISY 576 (625)
Q Consensus 505 ~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~ 576 (625)
.|+ .+.+.+...|.++.|..-+...... .+..+...-+. ..-.|+++++.+.|++++. +..+. ...
T Consensus 1005 qynvak~~~gRL~lslgefe~A~~a~~~~~~e---vdEdi~gt~l~-lFfkndf~~sl~~fe~aLs--is~se~d~vvLl 1078 (1238)
T KOG1127|consen 1005 QYNVAKPDAGRLELSLGEFESAKKASWKEWME---VDEDIRGTDLT-LFFKNDFFSSLEFFEQALS--ISNSESDKVVLL 1078 (1238)
T ss_pred hhhhhhhhhhhhhhhhcchhhHhhhhcccchh---HHHHHhhhhHH-HHHHhHHHHHHHHHHHHhh--hcccccchhhhh
Confidence 222 3344555566666554433322211 11111111111 1345677777777777776 22211 234
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 577 NITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 577 ~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
..++.+....+..+.|...+-+...
T Consensus 1079 ~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1079 CKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HHHHHHHhhcccchHHHHHHHHHHH
Confidence 4455555566666677766666654
No 70
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=2.3e-09 Score=99.20 Aligned_cols=441 Identities=14% Similarity=0.083 Sum_probs=261.3
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCC
Q 038112 142 INGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGR 221 (625)
Q Consensus 142 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 221 (625)
+..+...+++++|.+...++...+ +.+...+..-+.++++.+.|++|+.+.+.-.. ...+...+-.-+-+..+.+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhHHHHHHHHHccc
Confidence 455667899999999999999885 55777788888899999999999966554221 11111121233456678999
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038112 222 FDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFV-DAVTYNAMIDGFCRAGKIKECFELWE 300 (625)
Q Consensus 222 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 300 (625)
.++|+..++-.. ..+..+...-.+.+.+.|++++|+.+|+.+.+++.+- +...-..++.+-.. -.+. +.+
T Consensus 95 ~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~q 165 (652)
T KOG2376|consen 95 LDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LLQ 165 (652)
T ss_pred HHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HHH
Confidence 999999998332 2344477777888999999999999999998875431 11222222221111 1111 222
Q ss_pred HHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------CCCCh------h-hHHHHHHHHHhcCCHHHHHH
Q 038112 301 VMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKN-------CNADS------T-THGVLINGLCKNGYLNKAIQ 366 (625)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~------~-~~~~l~~~~~~~~~~~~a~~ 366 (625)
........+-..+......+...|++.+|+++++.....+ ...+. . .-..+.-++-..|+..+|..
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 2222222245556667778889999999999999883321 11111 1 12334556778899999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCH-H-HHHHHHH------------HHHhCCCCCC
Q 038112 367 ILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKL-E-NAIFLFK------------EMSRKGCSPT 432 (625)
Q Consensus 367 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~-~a~~~~~------------~~~~~~~~~~ 432 (625)
++..+......+.. ......|.++. .....++ + .+...++ .+... .-.
T Consensus 246 iy~~~i~~~~~D~~---------------~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~--qk~ 307 (652)
T KOG2376|consen 246 IYVDIIKRNPADEP---------------SLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK--QKQ 307 (652)
T ss_pred HHHHHHHhcCCCch---------------HHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHH--HHH
Confidence 98865443322110 01111122221 1111111 1 1111111 11111 001
Q ss_pred hhhH-HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHh--ccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038112 433 VVSY-NTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLC--QSKKIDMALKLCCQFLQKGFTPDVTMYNIL 509 (625)
Q Consensus 433 ~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 509 (625)
.... +.++..| .+..+.+.++...... ..|.. .+..++..+. +...+..+.+++....+....-...+....
T Consensus 308 ~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~ 382 (652)
T KOG2376|consen 308 AIYRNNALLALF--TNKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLR 382 (652)
T ss_pred HHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHH
Confidence 1112 2333333 3334444444433322 23332 2333333322 222577788888877765333235566677
Q ss_pred HHHHHcCCCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc--CCCCCH----HH
Q 038112 510 IHGLCSAGKVEDALQLYS--------NMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEE--RLRPDI----IS 575 (625)
Q Consensus 510 ~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~----~~ 575 (625)
+......|+++.|++++. .+.+.+ -.+.+...+...+.+.++.+.|..++.+++.. ...+.. .+
T Consensus 383 aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~ 460 (652)
T KOG2376|consen 383 AQLKISQGNPEVALEILSLFLESWKSSILEAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSL 460 (652)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhH
Confidence 788889999999999999 555433 34556667778888888888888888887762 112222 23
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038112 576 YNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNN 621 (625)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 621 (625)
+..++..-.+.|+-++|..+++++.+. .++|..+...++.+|++.
T Consensus 461 ~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 461 MREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc
Confidence 444445555679999999999999975 356778888899888764
No 71
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.53 E-value=3.2e-11 Score=103.45 Aligned_cols=313 Identities=12% Similarity=0.009 Sum_probs=211.9
Q ss_pred HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112 7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN 86 (625)
Q Consensus 7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (625)
+|+.-++..|.+..|+..|..++..+ |.+-.++...+..|+..|+...|+.-+..++...| .-......-+..+.++
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKp-DF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKP-DFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCc-cHHHHHHHhchhhhhc
Confidence 45566666777777777777776655 77777777777777777777777777777777642 2233444555666777
Q ss_pred CCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 038112 87 SMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGV 166 (625)
Q Consensus 87 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 166 (625)
|.++.|..-|+.+++..|+.... .+|..-+..+.+ .......+..+...|+...|+.....+++..
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~-------~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~- 185 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLV-------LEAQSKLALIQE------HWVLVQQLKSASGSGDCQNAIEMITHLLEIQ- 185 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchh-------HHHHHHHHhHHH------HHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-
Confidence 77777777777776655543222 111111111110 1122223344556788888888888888773
Q ss_pred CCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhh---
Q 038112 167 ETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFT--- 243 (625)
Q Consensus 167 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--- 243 (625)
+-|...+..-..+|...|+...|+.-+....+.. ..+...+..+-..+..-|+.+.++..+++.++.++ |...
T Consensus 186 ~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldp--dHK~Cf~ 261 (504)
T KOG0624|consen 186 PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDP--DHKLCFP 261 (504)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCc--chhhHHH
Confidence 4477777778888888888888888777776653 44556666677778888888888888888876543 3221
Q ss_pred -HHHH---------HHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q 038112 244 -YCSF---------IHGLCKAGNVEGAERVYREMVESGIFVD---AVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNV 310 (625)
Q Consensus 244 -~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 310 (625)
|..+ +......++|.++++..+..++..+... ...+..+..++...+++.+|+....++....|.++
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv 341 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDV 341 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHH
Confidence 1111 2345677888888888888887754312 23345566677778889999999999988888888
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 038112 311 VSYNILIRGLLENGKVDEAISIWELLREKN 340 (625)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 340 (625)
.++..-..+|.-...++.|+.-|+...+.+
T Consensus 342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 342 QVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 999888999998889999999999888874
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=4.2e-12 Score=107.98 Aligned_cols=256 Identities=13% Similarity=0.040 Sum_probs=212.1
Q ss_pred hhhcCChHHHHHHHHHHHHC---------CCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHH
Q 038112 110 LCRKRQFEKAKRFLNSLWEK---------GLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGF 180 (625)
Q Consensus 110 ~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 180 (625)
+...++.+.|-........- +...|-+--+.+..+|.+.|.+.+|...|+...+. .|-+.||..|.+.|
T Consensus 189 fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY 266 (478)
T KOG1129|consen 189 FYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVY 266 (478)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHH
Confidence 56677777776544433221 11123333466788999999999999999998887 55778999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 038112 181 FKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGA 260 (625)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 260 (625)
-+..+...|+.++.+.++. +|.++.......+.+-..++.++|.++++...+..+ .+++....+...|.-.++++-|
T Consensus 267 ~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~A 343 (478)
T KOG1129|consen 267 QRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMA 343 (478)
T ss_pred HHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHH
Confidence 9999999999999998876 455666666777889999999999999999988764 5777777788888899999999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C--cHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 038112 261 ERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-L--NVVSYNILIRGLLENGKVDEAISIWELLR 337 (625)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 337 (625)
+..|+++++.|+. ++..|..+.-+|.-.++++-++.-|++...... + -..+|..+..+....|++..|.+.|+-.+
T Consensus 344 lryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL 422 (478)
T KOG1129|consen 344 LRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL 422 (478)
T ss_pred HHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh
Confidence 9999999999987 899999999999999999999999999876543 2 67889999999999999999999999998
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112 338 EKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVE 372 (625)
Q Consensus 338 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 372 (625)
..+.. ....++.+.-.-.+.|+.+.|..++....
T Consensus 423 ~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 423 TSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred ccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 88544 56778888888899999999999998543
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.52 E-value=2e-09 Score=103.65 Aligned_cols=297 Identities=14% Similarity=0.071 Sum_probs=185.3
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHH
Q 038112 40 LFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKA 119 (625)
Q Consensus 40 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A 119 (625)
.+......+...|++++|++.++...+.- .....+.-..+..+.+.|+.++|...+..+
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I-~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~L-------------------- 64 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQI-LDKLAVLEKRAELLLKLGRKEEAEKIYREL-------------------- 64 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------------
Confidence 34444555666677777777766655542 223344455666666666666666666665
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHh-----cCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChh-HHHHHH
Q 038112 120 KRFLNSLWEKGLKPDVYSYGTVINGLVK-----SGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYM-RAKEIW 193 (625)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~ 193 (625)
++++ |.|..-|..+..+..- ..+.+....+|+++...- |.......+.-.+..-..+. .+...+
T Consensus 65 -------i~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl 134 (517)
T PF12569_consen 65 -------IDRN-PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYL 134 (517)
T ss_pred -------HHHC-CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHH
Confidence 4454 2333334444444321 124556677777776552 23333322322222212222 233444
Q ss_pred HHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhC--------------CCCCChh--hHHHHHHHHHhcCCH
Q 038112 194 ERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKN--------------EREKDSF--TYCSFIHGLCKAGNV 257 (625)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------~~~~~~~--~~~~l~~~~~~~~~~ 257 (625)
......| +| .+|+.+-..|.......-..+++...... .-+|+.. ++..+.+.|-..|++
T Consensus 135 ~~~l~Kg-vP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~ 210 (517)
T PF12569_consen 135 RPQLRKG-VP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDY 210 (517)
T ss_pred HHHHhcC-Cc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCH
Confidence 4444443 22 25555555555444444444555444321 0123332 446667888899999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 038112 258 EGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLR 337 (625)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 337 (625)
++|++..++.+++.+. .+..|..-++.+-+.|++++|.+.++.....+..|...-+..+..+.+.|++++|.+++....
T Consensus 211 ~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft 289 (517)
T PF12569_consen 211 EKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFT 289 (517)
T ss_pred HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence 9999999999987433 478888889999999999999999999999988888888899999999999999999998887
Q ss_pred HcCCCCChhh--------HHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112 338 EKNCNADSTT--------HGVLINGLCKNGYLNKAIQILNEVE 372 (625)
Q Consensus 338 ~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~~ 372 (625)
..+..|.... ......+|.+.|++..|+..+..+.
T Consensus 290 r~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 290 REDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7764332221 1334678889999999998887544
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.51 E-value=1.2e-11 Score=123.49 Aligned_cols=246 Identities=11% Similarity=0.058 Sum_probs=175.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh---------cCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcC
Q 038112 114 RQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVK---------SGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKG 184 (625)
Q Consensus 114 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 184 (625)
+++++|+.+|+++++.+ |.+...|..+..++.. .+++++|...++++.+.++. +...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 34678888888888876 4456666666655442 23478899999999888543 6778888888888899
Q ss_pred ChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 038112 185 DYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVY 264 (625)
Q Consensus 185 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 264 (625)
++++|...|+++.+.+ |.+...+..+..++...|++++|+..+++..+..+. +...+..++..+...|++++|+..+
T Consensus 353 ~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 353 EYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999988864 445667888888899999999999999998877543 3333344455566788899999999
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 038112 265 REMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNAD 344 (625)
Q Consensus 265 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 344 (625)
+++.....+-++..+..+..++...|++++|...+..+....+.+....+.+...+...| +.+...++.+.+..-. .
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~-~ 506 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR-I 506 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH-h
Confidence 888765433345567778888889999999999998887776667777888888888777 4777777766553211 1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHH
Q 038112 345 STTHGVLINGLCKNGYLNKAIQI 367 (625)
Q Consensus 345 ~~~~~~l~~~~~~~~~~~~a~~~ 367 (625)
..........+.-.|+.+.+..+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW 529 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH
Confidence 11112234445556666665555
No 75
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=4.5e-10 Score=102.82 Aligned_cols=99 Identities=10% Similarity=-0.148 Sum_probs=86.2
Q ss_pred HHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCC
Q 038112 9 LNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSM 88 (625)
Q Consensus 9 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (625)
++...+.|+++.|+..|-.++..+ |++-..|.....+++..|+|++|.+--.+..+.+ |.-+..|...+.++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhccc
Confidence 466778899999999999999888 8888888889999999999999999988888886 4577899999999999999
Q ss_pred chHHHHHHHHhHHhhCCCcchh
Q 038112 89 PDKALDVFQRMNEIFGCEAGIL 110 (625)
Q Consensus 89 ~~~A~~~~~~~~~~~~~~~~~~ 110 (625)
+++|+..|.+-++..|++..++
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~ 107 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLK 107 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHH
Confidence 9999999999888777776663
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.3e-08 Score=90.00 Aligned_cols=306 Identities=11% Similarity=-0.007 Sum_probs=184.3
Q ss_pred CCCCchhhHHHHHHHHh--cCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhh
Q 038112 166 VETNVVCYNILIDGFFK--KGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFT 243 (625)
Q Consensus 166 ~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 243 (625)
++|...+....+.++++ .++-..+...+-.+.....++.|+.....+..++...|+.++|+..|++....++ -+...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp-y~i~~ 268 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP-DNVEA 268 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh-hhhhh
Confidence 34333333334444433 3455555555554444444677777888888888888888888888888764432 12222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhC
Q 038112 244 YCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLEN 323 (625)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (625)
.......+.+.|+++....+...+.... +-....|..-+.......+++.|+.+-++..+..+.+...+..-...+...
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhc
Confidence 2223334456788888777777776542 123444544455556677888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHH
Q 038112 324 GKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNS 403 (625)
Q Consensus 324 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 403 (625)
+++++|.-.|+...... +.+...|..++..|...|.+.+|.-.-+.... .+ +.+..+...
T Consensus 348 ~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--------------~~-----~~sA~~LtL 407 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIR--------------LF-----QNSARSLTL 407 (564)
T ss_pred cchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--------------Hh-----hcchhhhhh
Confidence 88888888888777663 22667777888888888888777665553211 11 112233332
Q ss_pred HH-H-HHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc
Q 038112 404 LM-N-GFIQASKLENAIFLFKEMSRKGCSPTV-VSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQ 480 (625)
Q Consensus 404 l~-~-~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 480 (625)
+. . .+....--++|.++++..... .|+. ...+.+...+...|+.+.++.+++.... ..||....+.+...+..
T Consensus 408 ~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A 483 (564)
T KOG1174|consen 408 FGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRA 483 (564)
T ss_pred hcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHH
Confidence 21 1 112222345666666655543 2332 2344555555666666666666666555 35566666666666666
Q ss_pred cCCHHHHHHHHHHHHhC
Q 038112 481 SKKIDMALKLCCQFLQK 497 (625)
Q Consensus 481 ~~~~~~A~~~~~~~~~~ 497 (625)
.+.+++|++.|...+..
T Consensus 484 ~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 484 QNEPQKAMEYYYKALRQ 500 (564)
T ss_pred hhhHHHHHHHHHHHHhc
Confidence 66666666666666553
No 77
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.48 E-value=2.3e-09 Score=105.19 Aligned_cols=480 Identities=12% Similarity=0.035 Sum_probs=285.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHH
Q 038112 113 KRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEI 192 (625)
Q Consensus 113 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 192 (625)
+++...|+..|-+.+..+ +.-...|..+...|...-+...|.+.|+++.+.+.. +...+..+...|.+..+++.|..+
T Consensus 471 rK~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHH
Confidence 445777777777777655 233456788888787777888899999999888543 777888889999999999999988
Q ss_pred HHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038112 193 WERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGI 272 (625)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 272 (625)
.-...+......-...|....-.|...++...|+.-|+......| .|...|..++.+|...|++..|.++|.++....+
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP 627 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence 554443321111223455566678888999999999998887664 5788899999999999999999999988876532
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHHhCCCHHHHHHHHHHHH-------H
Q 038112 273 FVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLN-------VVSYNILIRGLLENGKVDEAISIWELLR-------E 338 (625)
Q Consensus 273 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~ 338 (625)
. +...-.......+..|++.++...+..+....... ..++..+...+...|-...+...+++.+ .
T Consensus 628 ~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 628 L-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred H-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 2 22223334445567788999988888776543222 2333333333333344444444444332 2
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHH--H----HHHHHH-HHHhcCCCchHH--HHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 038112 339 KNCNADSTTHGVLINGLCKNGYLN--K----AIQILN-EVEEGGEGRLAD--AASLVNRMDKHGCKLNAYTCNSLMNGFI 409 (625)
Q Consensus 339 ~~~~~~~~~~~~l~~~~~~~~~~~--~----a~~~~~-~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (625)
.....+...|..+..+|.-.-..+ . ...++. ++.......-.+ ....-..........++.+|..++..|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 221112333333332221110000 0 011111 111111111111 0000001111111223445555555444
Q ss_pred h----c----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcc
Q 038112 410 Q----A----SKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQS 481 (625)
Q Consensus 410 ~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 481 (625)
+ . .+...|+..+....+.. ..+...|+.+.-. ...|.+.-+.-.|-+.... .+....+|..+.-.+.+.
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEec
Confidence 3 1 23346777777766542 2255667766654 6667777777777666554 244566788888888889
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHccCChhHH
Q 038112 482 KKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKK----RNCVPNLVTYNTLMDGLFKTGDCDKA 557 (625)
Q Consensus 482 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A 557 (625)
.+++.|...|....... +.+...|..........|+.-++..+|..-.. .|--+....|..........|+.++-
T Consensus 864 ~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~ 942 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEES 942 (1238)
T ss_pred ccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHH
Confidence 99999999999887753 33566666666666677888888888776222 23345555555555556667776665
Q ss_pred HHHHHHHHHc--------CCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 038112 558 LEIWNHILEE--------RLRP-DIISYNITLKGLCSCSRMSDAFEFLNDAL 600 (625)
Q Consensus 558 ~~~~~~~~~~--------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (625)
+...+++-.. +-.| +...|...+...-+.+.+.+|.+...++.
T Consensus 943 I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 943 INTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4443332211 1344 34677777777778888888888777764
No 78
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.46 E-value=5.6e-10 Score=108.00 Aligned_cols=550 Identities=14% Similarity=0.097 Sum_probs=282.0
Q ss_pred cCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch
Q 038112 30 REPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI 109 (625)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 109 (625)
+..|+.|+..+|..++..|+..|+.+.|- +|.-|.-.+.|....++..++......++.+.+.+..- +.+.....+
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~a---Dtyt~Ll~a 92 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLA---DTYTNLLKA 92 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCch---hHHHHHHHH
Confidence 33466677777777777787777777777 66666666556666666666666666666555542111 111122222
Q ss_pred hhhcCChH---HHHHHHHHHHH----CCC-----------------CCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 038112 110 LCRKRQFE---KAKRFLNSLWE----KGL-----------------KPDVYSYGTVINGLVKSGDLLGALAVFDEMFERG 165 (625)
Q Consensus 110 ~~~~~~~~---~A~~~~~~~~~----~~~-----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 165 (625)
|...||.. .+++.++.+.. .|. -||.. .++....-.|-++.+++++..+....
T Consensus 93 yr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 93 YRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 44444432 22222222211 111 11211 12222333444555555554443221
Q ss_pred CCCCchhhHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhH
Q 038112 166 VETNVVCYNILIDGFFK-KGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTY 244 (625)
Q Consensus 166 ~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 244 (625)
.. .+... .++-+.. ...+++-..+..... ..|+..++..++.+-...|+.+.|..++.+|.+.|.+.+...|
T Consensus 170 ~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~----e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 170 WN-APFQV--FLRQNVVDNTPVEKLLNMCKSLV----EAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred cc-chHHH--HHHHhccCCchHHHHHHHHHHhh----cCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 10 11111 1222222 122333333333322 2588999999999999999999999999999999998888877
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC
Q 038112 245 CSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENG 324 (625)
Q Consensus 245 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 324 (625)
..++-+ .++...+..+++-|.+.|+.|+..|+...+..+..+|....+. .+.+....+..-.....-.|
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~--------e~sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE--------EGSQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------cccchhhhhhHHHHHHHhcc
Confidence 777665 8888999999999999999999999988877777755532222 12222222222222222222
Q ss_pred -----C-----HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCchHH-----HHHHH
Q 038112 325 -----K-----VDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG---EGRLAD-----AASLV 386 (625)
Q Consensus 325 -----~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~-----a~~~~ 386 (625)
+ ..-....+.+..-.|+......|.... -....|+-+...++...+.... .+...+ +...|
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF 390 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF 390 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence 1 111222222222234333333333322 2333666666666665544322 121111 22223
Q ss_pred HHHhhCCCCccHHHHHHHHHHHHh---cCCHHHHHHHHHHH------------HhCC----CCC---Chh----hHHHHH
Q 038112 387 NRMDKHGCKLNAYTCNSLMNGFIQ---ASKLENAIFLFKEM------------SRKG----CSP---TVV----SYNTLI 440 (625)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~------------~~~~----~~~---~~~----~~~~l~ 440 (625)
.+.....+ ...+. ...+... ........+..... .... ..| -.. .-+.++
T Consensus 391 rr~e~~~~---~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~ 466 (1088)
T KOG4318|consen 391 RRIERHIC---SRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLH 466 (1088)
T ss_pred HHHHhhHH---HHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHH
Confidence 22222111 11111 1111111 11111111111111 1000 000 001 123334
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCC
Q 038112 441 NGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQK--GFTPDVTMYNILIHGLCSAGK 518 (625)
Q Consensus 441 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 518 (625)
..+++.-+..+++..-++.... .-+ ..|..++.-+......+.|..+.+++... .+..+...+..+.+.+.+.+.
T Consensus 467 l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~ 543 (1088)
T KOG4318|consen 467 LTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAI 543 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHH
Confidence 4444444444444332222221 111 45677777778888888888888776542 223355567778888888888
Q ss_pred HHHHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHH
Q 038112 519 VEDALQLYSNMKKRN-CVPN-LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFL 596 (625)
Q Consensus 519 ~~~A~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 596 (625)
..++.+++.++.+.- ..|+ ..++..+.......|+.+.-.++.+-+...|+..+ ..++....+.++...|.+..
T Consensus 544 l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~ 619 (1088)
T KOG4318|consen 544 LYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAP 619 (1088)
T ss_pred HHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcc
Confidence 888888888887641 1222 34555666666778888887777777776555432 33444455666777777766
Q ss_pred HHHHHCCCCCCHHHHHHHHHH
Q 038112 597 NDALCRGILPTTITWHILVRA 617 (625)
Q Consensus 597 ~~~~~~~~~~~~~~~~~l~~~ 617 (625)
+...+. .+|.+.....+.+.
T Consensus 620 e~~~qk-yk~~P~~~e~lcrl 639 (1088)
T KOG4318|consen 620 EPEEQK-YKPYPKDLEGLCRL 639 (1088)
T ss_pred hHHHHH-hcCChHHHHHHHHH
Confidence 665432 34444444444333
No 79
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=1e-10 Score=98.34 Aligned_cols=305 Identities=14% Similarity=0.100 Sum_probs=192.5
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch-------hhhc
Q 038112 41 FHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI-------LCRK 113 (625)
Q Consensus 41 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~ 113 (625)
+.+++..+.+..++++|++++..-..+++ .+...+..++.+|....+++.|.+.++++-...|..... +++.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 34455555666677777777777666653 255666667777777777777777777765555543332 5566
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHH--H--HHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHH
Q 038112 114 RQFEKAKRFLNSLWEKGLKPDVYSYGTVIN--G--LVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA 189 (625)
Q Consensus 114 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 189 (625)
+.+.+|+.+...|.+. ....+..++ + ....+++..+..+.++.... .+..+.....-...+.|+++.|
T Consensus 92 ~i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred cccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHH
Confidence 6677777776666542 222222222 1 23578888888888876633 2556667777777899999999
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHH----HHHHHHHhcCCHHHHHHHHH
Q 038112 190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYC----SFIHGLCKAGNVEGAERVYR 265 (625)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~ 265 (625)
.+-|+...+.+|+.|- .+|+. .-++.+.|+++.|++...++.++|+...+..-. -.+.. ...|+ -+.+..
T Consensus 164 vqkFqaAlqvsGyqpl-lAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgN---t~~lh~ 237 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPL-LAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGN---TLVLHQ 237 (459)
T ss_pred HHHHHHHHhhcCCCch-hHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccc---hHHHHH
Confidence 9999999998877664 35554 446778899999999999999888754333110 00000 00011 011110
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 038112 266 EMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL--NVVSYNILIRGLLENGKVDEAISIWELLREKNCNA 343 (625)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 343 (625)
.. -...++.-...+.+.++++.|.+.+..|..+... ++.+...+.-.- ..+++.+..+-+.-+++.++ .
T Consensus 238 Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-f 308 (459)
T KOG4340|consen 238 SA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-F 308 (459)
T ss_pred HH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-C
Confidence 00 1233444556677888999998888888765443 565555544322 24556666666666666654 4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038112 344 DSTTHGVLINGLCKNGYLNKAIQILN 369 (625)
Q Consensus 344 ~~~~~~~l~~~~~~~~~~~~a~~~~~ 369 (625)
...|+..++-.|++..-++.|.+++.
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 56788888888999888888888776
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.46 E-value=3e-11 Score=98.02 Aligned_cols=190 Identities=13% Similarity=0.050 Sum_probs=120.3
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch-------hhhcC
Q 038112 42 HHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI-------LCRKR 114 (625)
Q Consensus 42 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~ 114 (625)
..++..|+..|++..|.+-++++++.+| .+..++..++..|.+.|..+.|.+.|+++.+..|...++ +|.+|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 3444455555555555555555555542 244455555555555555555555555555544444444 45555
Q ss_pred ChHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHH
Q 038112 115 QFEKAKRFLNSLWEKG-LKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIW 193 (625)
Q Consensus 115 ~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 193 (625)
.+++|...|++++... ...-..+|..+.-+..+.|+++.|...|++..+.... .+.+...+...+...|++..|...+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHH
Confidence 5555555555555432 1223456777777777888888888888888877433 5667777888888888888888888
Q ss_pred HHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112 194 ERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKN 235 (625)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (625)
+.....+ .++..+.-..|..-...|+.+.+.+.=.++...
T Consensus 197 ~~~~~~~--~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 197 ERYQQRG--GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHhcc--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8877765 367777777778888888888877766666544
No 81
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=1.1e-10 Score=104.39 Aligned_cols=202 Identities=12% Similarity=0.043 Sum_probs=168.3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 038112 396 LNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLI 475 (625)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 475 (625)
.....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 345677888899999999999999999998764 2356678888889999999999999999998863 34566778888
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 038112 476 NGLCQSKKIDMALKLCCQFLQKGF-TPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDC 554 (625)
Q Consensus 476 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 554 (625)
..+...|++++|.+.+++...... +.....+..++.++...|++++|...+.+..+.. +.+...+..++..+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 899999999999999999987422 2345677778899999999999999999999863 44577888999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 555 DKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 555 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
++|...++++.+. .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999984 233566777778888899999999999888764
No 82
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=7.3e-11 Score=105.58 Aligned_cols=199 Identities=16% Similarity=0.143 Sum_probs=104.0
Q ss_pred HhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHH
Q 038112 135 VYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMIN 214 (625)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 214 (625)
...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHH
Confidence 3445555555666666666666666665542 2234455555566666666666666666555542 233344555555
Q ss_pred HHHhcCChhhHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHH
Q 038112 215 GLCKCGRFDECLEMWDRMKKNER-EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIK 293 (625)
Q Consensus 215 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (625)
.+...|++++|.+.+++...... ......+..+...+...|++++|...+.+....... +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 55666666666666665554221 112233444455555555555555555555544221 3444555555555555555
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 038112 294 ECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLR 337 (625)
Q Consensus 294 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 337 (625)
+|...+++.....+.+...+..++..+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555555554433344444455555555555555555544443
No 83
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=3.9e-10 Score=94.95 Aligned_cols=319 Identities=13% Similarity=0.078 Sum_probs=208.3
Q ss_pred HHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC
Q 038112 8 LLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS 87 (625)
Q Consensus 8 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (625)
+.-.|....++..|++.+..-.+.. |.+...+..++.+|....++..|..+|+++....|. -.....-.++.+.+.+
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~-~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE-LEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH-HHHHHHHHHHHHHHhc
Confidence 3445577889999999988766655 888999999999999999999999999999987543 3334445677788999
Q ss_pred CchHHHHHHHHhHHhhCC-------CcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHH
Q 038112 88 MPDKALDVFQRMNEIFGC-------EAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDE 160 (625)
Q Consensus 88 ~~~~A~~~~~~~~~~~~~-------~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 160 (625)
.+..|+.+...+.+...- ...+.+..+++..+..++++....+ +..+.+.......+.|+++.|.+-|+.
T Consensus 93 i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 93 IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHH
Confidence 999999999887442111 1111667888888988888876544 455555556566789999999999999
Q ss_pred HHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-------------Cc---------------chHHHH
Q 038112 161 MFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYP-------------NV---------------VTYNVM 212 (625)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------------~~---------------~~~~~l 212 (625)
..+.+.-.....| .++-++.+.|+++.|++...+++++| +.. |+ .++|.-
T Consensus 170 AlqvsGyqpllAY-niALaHy~~~qyasALk~iSEIieRG-~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLK 247 (459)
T KOG4340|consen 170 ALQVSGYQPLLAY-NLALAHYSSRQYASALKHISEIIERG-IRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLK 247 (459)
T ss_pred HHhhcCCCchhHH-HHHHHHHhhhhHHHHHHHHHHHHHhh-hhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhh
Confidence 8887433233344 45667778899999999888887765 211 11 123444
Q ss_pred HHHHHhcCChhhHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 038112 213 INGLCKCGRFDECLEMWDRMKKN-EREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGK 291 (625)
Q Consensus 213 ~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (625)
...+.+.|+++.|.+.+..|.-+ ..+.|+.|...+.-.- ..+++....+-+.-++..++. ...||..++-.|++..-
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHH
Confidence 45566777888887777776532 1234566655543322 234455555555556655443 45677777777888777
Q ss_pred HHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 038112 292 IKECFELWEVMGRKGCL--NVVSYNILIRGLLENGKVDEAISIWELL 336 (625)
Q Consensus 292 ~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 336 (625)
++-|-+++.+-...... +...|+.+-......-..+++.+-++.+
T Consensus 326 f~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 326 FDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 77777766553322111 3333333322223334455555544433
No 84
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=2.7e-07 Score=91.14 Aligned_cols=509 Identities=13% Similarity=0.129 Sum_probs=272.8
Q ss_pred HHHHHHHHHccCCchHHHHHHHHhHHhhC----------CCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 038112 76 ALSVIQAYGKNSMPDKALDVFQRMNEIFG----------CEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGL 145 (625)
Q Consensus 76 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (625)
+..+++.|.+.|-+..|++.|..+.+.-. .+.-.+...-.++++.+++..|+..+++.|..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 56788999999999999998887755211 11112777788999999999999988888887777777767
Q ss_pred HhcCChhhHHHHHHHHHhC-----------CCCCCchhhHHHHHHHHhcCChhHHHHHHHHHH-----------hCCCC-
Q 038112 146 VKSGDLLGALAVFDEMFER-----------GVETNVVCYNILIDGFFKKGDYMRAKEIWERLV-----------METSV- 202 (625)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----------~~~~~- 202 (625)
...=-.+..+++|+..... ++.-|+......+.+.++.|++.+..++.+.-. +....
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 6665667777778776543 245678888888899999999998887755321 11000
Q ss_pred --CC-----CcchHHHHHHHHHhcCChhhHHHHHHHHHhCCC-----------CCChhhHHH-------------HHHHH
Q 038112 203 --YP-----NVVTYNVMINGLCKCGRFDECLEMWDRMKKNER-----------EKDSFTYCS-------------FIHGL 251 (625)
Q Consensus 203 --~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~~~~~~-------------l~~~~ 251 (625)
.| |..-+-.=+..|.-.++..+-+++|-+-..-+. .-+...... +..-.
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~Ev 848 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEV 848 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHH
Confidence 01 111111111122222333333333322111000 011111111 22233
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH-HHH---------HHHHHHhcCC--------------
Q 038112 252 CKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKE-CFE---------LWEVMGRKGC-------------- 307 (625)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~---------~~~~~~~~~~-------------- 307 (625)
-+.++..--...++..+..|.. ++.+++.+...|..+++-.+ -++ +=+-..+++|
T Consensus 849 EkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~ 927 (1666)
T KOG0985|consen 849 EKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDL 927 (1666)
T ss_pred HhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcH
Confidence 3455556666677777777766 88999999988887654222 111 1111122222
Q ss_pred ------CcHHHHHHHHHHHHhCCCHHHHHH-----------HHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHHHHHH
Q 038112 308 ------LNVVSYNILIRGLLENGKVDEAIS-----------IWELLREKNC--NADSTTHGVLINGLCKNGYLNKAIQIL 368 (625)
Q Consensus 308 ------~~~~~~~~l~~~~~~~~~~~~a~~-----------~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 368 (625)
.....|....+.+....+.+-=.+ +.++..+.++ ..|+...+.-+.++...+-..+-++++
T Consensus 928 elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELL 1007 (1666)
T KOG0985|consen 928 ELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELL 1007 (1666)
T ss_pred HHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHH
Confidence 012234444555555555433222 2233333322 235556666778888888888888888
Q ss_pred HHHHhcCCC------------------chHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--
Q 038112 369 NEVEEGGEG------------------RLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKG-- 428 (625)
Q Consensus 369 ~~~~~~~~~------------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 428 (625)
+++.-.... +.....+.++++...+. -.+...+...+-+++|..+|+.....+
T Consensus 1008 EKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa-------~~ia~iai~~~LyEEAF~ifkkf~~n~~A 1080 (1666)
T KOG0985|consen 1008 EKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDA-------PDIAEIAIENQLYEEAFAIFKKFDMNVSA 1080 (1666)
T ss_pred HHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCc-------hhHHHHHhhhhHHHHHHHHHHHhcccHHH
Confidence 887654411 11112222222221111 112333445556677777776542110
Q ss_pred -------------------CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 038112 429 -------------------CSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALK 489 (625)
Q Consensus 429 -------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 489 (625)
--..+..|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.+++-.+
T Consensus 1081 ~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1081 IQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred HHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHH
Confidence 0012334555555555555555554433222 134455555566666666666655
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 038112 490 LCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERL 569 (625)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 569 (625)
.+....++.-.|... ..|+-+|++.++..+-.+++ ..||......++.-|...|.++.|.-+|...
T Consensus 1155 yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v----- 1220 (1666)
T KOG0985|consen 1155 YLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV----- 1220 (1666)
T ss_pred HHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh-----
Confidence 555555543333332 23455555555555444332 2355555555566666666665555544433
Q ss_pred CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 038112 570 RPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622 (625)
Q Consensus 570 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 622 (625)
..|..+...+...|++..|..-.+++ .+..+|..+--+|...+
T Consensus 1221 ----SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1221 ----SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKE 1263 (1666)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchh
Confidence 23555666666666666666555444 35567887777776543
No 85
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.42 E-value=4.9e-08 Score=95.04 Aligned_cols=230 Identities=10% Similarity=0.072 Sum_probs=132.4
Q ss_pred CCHHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 038112 3 ISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQA 82 (625)
Q Consensus 3 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (625)
+|..+|+--+..+|+.+.|- +|..+ +..-.|.....+..+.......++.+.+. .|.+++|..+...
T Consensus 26 vtyqsLiarYc~~gdieaat-if~fm-~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~Ll~a 92 (1088)
T KOG4318|consen 26 VTYQSLIARYCTKGDIEAAT-IFPFM-EIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNLLKA 92 (1088)
T ss_pred hhHHHHHHHHcccCCCcccc-chhhh-hcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHHHHH
Confidence 45667777788899999998 88764 33334666777777777777777776664 3567888888888
Q ss_pred HHccCCchHHHHHHHH-hHH---hhC----------------CC----cch------hhhcCChHHHHHHHHHHHHCCCC
Q 038112 83 YGKNSMPDKALDVFQR-MNE---IFG----------------CE----AGI------LCRKRQFEKAKRFLNSLWEKGLK 132 (625)
Q Consensus 83 ~~~~~~~~~A~~~~~~-~~~---~~~----------------~~----~~~------~~~~~~~~~A~~~~~~~~~~~~~ 132 (625)
|...||... .+..++ +.. .+. +. +++ ..-.|-++.+++++..+.-...
T Consensus 93 yr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~- 170 (1088)
T KOG4318|consen 93 YRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAW- 170 (1088)
T ss_pred HHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccc-
Confidence 888887765 333332 211 100 00 000 2233444444444433321110
Q ss_pred CCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHH
Q 038112 133 PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVM 212 (625)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 212 (625)
..+... +++-+.. ...-..++........-.|++.+|..++.+-...|+.+.|..++..|.+.+ ++-+..-|..|
T Consensus 171 ~~p~~v--fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g-fpir~HyFwpL 245 (1088)
T KOG4318|consen 171 NAPFQV--FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG-FPIRAHYFWPL 245 (1088)
T ss_pred cchHHH--HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC-CCcccccchhh
Confidence 001111 1222221 112222222222222114677788888888888888888888888887776 66666555555
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 038112 213 INGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAG 255 (625)
Q Consensus 213 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 255 (625)
+-+ .++...+..++.-|...|+.|+..|+...+..+..+|
T Consensus 246 l~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred hhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 433 6777777777777777788888877776665555533
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=7e-09 Score=95.21 Aligned_cols=439 Identities=15% Similarity=0.071 Sum_probs=236.1
Q ss_pred hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHH
Q 038112 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA 189 (625)
Q Consensus 110 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 189 (625)
.+..|+++.|+.+|...+..+ |+|...|..-..+++..|++++|++=-.+-++..+. -+..|.....++.-.|++++|
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccHHHH
Confidence 445667777777777767665 557777777777888888888877766666555221 356677788888888888888
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHH---HHHHHHHhC---CCCCChhhHHHHHHHHHhcC-------C
Q 038112 190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECL---EMWDRMKKN---EREKDSFTYCSFIHGLCKAG-------N 256 (625)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~---~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~-------~ 256 (625)
+..|..-++.. +.+...++.+..++.......... .++..+... ........|..++..+-+.. +
T Consensus 90 ~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 90 ILAYSEGLEKD--PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHhhcC--CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 88888877753 445555666665551110000000 000000000 00000111222222111100 0
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh-cCCHH----HHHHHHHHHHhc--CCCcHHHHHHHHHHHHhCCCHHHH
Q 038112 257 VEGAERVYREMVESGIFVDAVTYNAMIDGFCR-AGKIK----ECFELWEVMGRK--GCLNVVSYNILIRGLLENGKVDEA 329 (625)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~----~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 329 (625)
.....+..-.+...+. . .+......... ...+. .......+.... ...-......++....+..+++.+
T Consensus 168 d~r~m~a~~~l~~~~~--~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDE--L--LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cHHHHHHHHHHhcCcc--c--cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 0000000000000000 0 00000000000 00000 000000000000 000223355677888888889999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 038112 330 ISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFI 409 (625)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (625)
++.+....+.. -+..-++....+|...|.+.......+...+.+.....+..- -...+..+..+|.
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~kl------------Iak~~~r~g~a~~ 309 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKL------------IAKALARLGNAYT 309 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHH------------HHHHHHHhhhhhh
Confidence 99998888875 355556667778888888888777666433222111111000 1112223455677
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHhccCCHHHHH
Q 038112 410 QASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM-ITYSLLINGLCQSKKIDMAL 488 (625)
Q Consensus 410 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~ 488 (625)
+.++++.++..|.+.......|+. ..+....+++........- +.|.. .-...-...+.+.|++..|.
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHH
Confidence 778899999999887765434332 2222333444444333332 22222 11222356677888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 038112 489 KLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEER 568 (625)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 568 (625)
..|.++++.. +.|...|....-+|.+.|.+..|+.-.+..++.+ ++....|..-+.++....++++|.+.|.+.++
T Consensus 379 ~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale-- 454 (539)
T KOG0548|consen 379 KHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALE-- 454 (539)
T ss_pred HHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 8888888875 5578888888888888888888888888877752 44466677777777777888888888888888
Q ss_pred CCCCHHHHHHHHHHHhh
Q 038112 569 LRPDIISYNITLKGLCS 585 (625)
Q Consensus 569 ~~p~~~~~~~l~~~~~~ 585 (625)
+.|+..-+...+.-|..
T Consensus 455 ~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVE 471 (539)
T ss_pred cCchhHHHHHHHHHHHH
Confidence 66766444444443443
No 87
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.41 E-value=2.9e-09 Score=91.72 Aligned_cols=369 Identities=13% Similarity=0.102 Sum_probs=267.0
Q ss_pred CCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch---
Q 038112 33 GYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI--- 109 (625)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--- 109 (625)
+.|.+..-...++..++.+|.+..|+.-|..++..+| .+...++.-+..|...|+...|+.-+.++++.-|....+
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp-~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDP-NNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence 3466677788899999999999999999999999864 466777788889999999999999999998877766555
Q ss_pred ----hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCC
Q 038112 110 ----LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGD 185 (625)
Q Consensus 110 ----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 185 (625)
+.++|.+++|..-|+.+++.+ |+..+ ...+..+. ...+++. .....+..+...|+
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl-------~~~~e~~---------~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKL-------ALIQEHW---------VLVQQLKSASGSGD 170 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHH-------HhHHHHH---------HHHHHHHHHhcCCc
Confidence 889999999999999999876 32211 11111111 1111111 12334555677899
Q ss_pred hhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038112 186 YMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYR 265 (625)
Q Consensus 186 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 265 (625)
...|++....+++. .+.+...+..-..+|...|++..|+.-++...+... .+..++..+...+...|+.+.++...+
T Consensus 171 ~~~ai~~i~~llEi--~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 171 CQNAIEMITHLLEI--QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred hhhHHHHHHHHHhc--CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999987 467888888899999999999999988888776543 466777778888999999999999999
Q ss_pred HHHHCCCCcCHHH----HH-------H--HHHHHHhcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHhCCCHHH
Q 038112 266 EMVESGIFVDAVT----YN-------A--MIDGFCRAGKIKECFELWEVMGRKGCL----NVVSYNILIRGLLENGKVDE 328 (625)
Q Consensus 266 ~~~~~~~~~~~~~----~~-------~--l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~ 328 (625)
+.++.+ ||... |. . -+....+.++|.++++-.+...+..|. ....+..+-.++...+++.+
T Consensus 248 ECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 248 ECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred HHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence 988763 44321 11 1 123456789999999999999888776 33455667778888899999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHhhCCCCccHHHHHHHHH
Q 038112 329 AISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGR--LADAASLVNRMDKHGCKLNAYTCNSLMN 406 (625)
Q Consensus 329 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 406 (625)
|++...+++...+. |..++..-..+|.-...++.|+.-++...+.++.+ ..+..+--.++....-..| |..++
T Consensus 326 AiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRD---YYKIL- 400 (504)
T KOG0624|consen 326 AIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRD---YYKIL- 400 (504)
T ss_pred HHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccch---HHHHh-
Confidence 99999999887432 57888888899999999999999999988776443 2233333333333222212 22222
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 038112 407 GFIQASKLENAIFLFKEMSRKGCSPTVV 434 (625)
Q Consensus 407 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 434 (625)
+--+...-.+..+.|+++... ..||..
T Consensus 401 GVkRnAsKqEI~KAYRKlAqk-WHPDNF 427 (504)
T KOG0624|consen 401 GVKRNASKQEITKAYRKLAQK-WHPDNF 427 (504)
T ss_pred hhcccccHHHHHHHHHHHHHh-cCCccc
Confidence 234445566677777777654 445543
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.40 E-value=4.2e-10 Score=91.48 Aligned_cols=196 Identities=15% Similarity=0.026 Sum_probs=131.8
Q ss_pred hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHH
Q 038112 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA 189 (625)
Q Consensus 110 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 189 (625)
|...|++..|..-++++++.+ |.+..+|..+...|.+.|+.+.|.+.|+++.+..+. +..+.+.....+|.+|++++|
T Consensus 45 YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCChHHH
Confidence 444555555555555556555 445666777777777777777777777777776433 566677777777777777777
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038112 190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVE 269 (625)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 269 (625)
.+.|++......+..-..+|..++-+..+.|+++.|...|++.++..+ ..+.+...+.+.....|++..|...++....
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 777777776655555556777777777777777777777777776554 2445566677777777777777777777766
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 038112 270 SGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLN 309 (625)
Q Consensus 270 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 309 (625)
.+. ++..+.-..++.-...|+-+.+-++=..+.+..|.+
T Consensus 202 ~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 202 RGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred ccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 654 566666666777777777776666666665554443
No 89
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.39 E-value=4.3e-10 Score=106.65 Aligned_cols=174 Identities=18% Similarity=0.142 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCC-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCC-
Q 038112 277 VTYNAMIDGFCRAGKIKECFELWEVMGRK-------GCL-NVVSYNILIRGLLENGKVDEAISIWELLREK-----NCN- 342 (625)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~- 342 (625)
.+...+...|...|+++.|+.+++...+. ..+ -....+.+...|...+++++|..+|+++... |..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444666666666666666666665544 112 2333445778888888888888888887754 211
Q ss_pred C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 038112 343 A-DSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLF 421 (625)
Q Consensus 343 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 421 (625)
| -..++..|..+|.+.|++++|...++. |..++........+--...++.+...+...+++++|..++
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~-----------Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~ 348 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCER-----------ALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLL 348 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHH-----------HHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 1 234566777889999999999999884 4444444222211112233455666677777888877777
Q ss_pred HHHHhC---CCCCC----hhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038112 422 KEMSRK---GCSPT----VVSYNTLINGLCKVERFGEAYSFVKEMLE 461 (625)
Q Consensus 422 ~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 461 (625)
....+. -+.++ ..+++.+...|...|++++|.+++++++.
T Consensus 349 q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 349 QKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 765431 01111 12455555556666666666666655543
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=1.9e-10 Score=106.14 Aligned_cols=266 Identities=10% Similarity=0.039 Sum_probs=168.6
Q ss_pred CCHHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 038112 3 ISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQA 82 (625)
Q Consensus 3 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (625)
..|-..+-.|.+.|++..|.-.|+.+++++ |...++|..|+.+...+++-..|+..++++++.. |.+..++..|+..
T Consensus 286 pdPf~eG~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVS 362 (579)
T KOG1125|consen 286 PDPFKEGCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVS 362 (579)
T ss_pred CChHHHHHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence 345667788889999999999999999999 9999999999999999999999999999999997 4589999999999
Q ss_pred HHccCCchHHHHHHHHhHHhhCCCcch-h-hhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHH
Q 038112 83 YGKNSMPDKALDVFQRMNEIFGCEAGI-L-CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDE 160 (625)
Q Consensus 83 ~~~~~~~~~A~~~~~~~~~~~~~~~~~-~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 160 (625)
|...|.-.+|..++++.....+..... . ...++++.- +-.++...+.. ..++|-+
T Consensus 363 ytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~----------~s~~~~~~l~~-------------i~~~fLe 419 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT----------KSFLDSSHLAH-------------IQELFLE 419 (579)
T ss_pred HhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC----------cCCCCHHHHHH-------------HHHHHHH
Confidence 999999999999999876543322221 0 011111100 00122222221 2222222
Q ss_pred H-HhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 038112 161 M-FERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREK 239 (625)
Q Consensus 161 ~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 239 (625)
+ ...+..+|+.++..|...|.-.|++++|+..|+.++... |.|...||.|+..++...+.++|+..|.+.++..+.
T Consensus 420 aa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~- 496 (579)
T KOG1125|consen 420 AARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG- 496 (579)
T ss_pred HHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-
Confidence 2 223333566666666666666666666666666666542 445556666666666666666666666666655332
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 038112 240 DSFTYCSFIHGLCKAGNVEGAERVYREMVES---------GIFVDAVTYNAMIDGFCRAGKIKECFE 297 (625)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~a~~ 297 (625)
-+.+...|.-+|...|.+++|.+.|-.++.. +..++..+|..|=.++.-.++.+.+.+
T Consensus 497 yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 497 YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 2334444555666666666666655554321 112234455555455555555554433
No 91
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.38 E-value=6.7e-10 Score=101.36 Aligned_cols=151 Identities=13% Similarity=-0.059 Sum_probs=72.7
Q ss_pred CChhHHHHHHHhhccCCCC--CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHH
Q 038112 16 KNPHTALALFDSATREPGY--AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKAL 93 (625)
Q Consensus 16 ~~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 93 (625)
+..+.++..+..++..... +..+..|..++..+...|+.++|...|+++++.+| .+...+..++..+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 3444555555554432210 11133455555555555555555555555555542 34555555555555555555555
Q ss_pred HHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhh
Q 038112 94 DVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCY 173 (625)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 173 (625)
..|+++.+ .+ |.+..+|..+..++...|++++|.+.|+...+..+ +....
T Consensus 119 ~~~~~Al~---------------------------l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~ 168 (296)
T PRK11189 119 EAFDSVLE---------------------------LD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYR 168 (296)
T ss_pred HHHHHHHH---------------------------hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHH
Confidence 55555433 22 22344555555555566666666666666655422 21111
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 038112 174 NILIDGFFKKGDYMRAKEIWERLV 197 (625)
Q Consensus 174 ~~l~~~~~~~g~~~~a~~~~~~~~ 197 (625)
......+...++.++|.+.+....
T Consensus 169 ~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 169 ALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHH
Confidence 111122233455666666664443
No 92
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.37 E-value=1.5e-09 Score=103.15 Aligned_cols=252 Identities=15% Similarity=0.093 Sum_probs=168.2
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHH
Q 038112 309 NVVSYNILIRGLLENGKVDEAISIWELLREK-----N-CNADSTTH-GVLINGLCKNGYLNKAIQILNEVEEGGEGRLAD 381 (625)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 381 (625)
-..+...+...|...|+++.|+.+++...+. | ..|...+. ..+...|...+++.+|..+|++
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~----------- 266 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEE----------- 266 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHH-----------
Confidence 4556667999999999999999999988765 2 12333333 3477889999999999999985
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038112 382 AASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLE 461 (625)
Q Consensus 382 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 461 (625)
|..+.+...-...+.-..+++.|...|.+.|++++|...++...+. +++...
T Consensus 267 AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~~~~ 318 (508)
T KOG1840|consen 267 ALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEKLLG 318 (508)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHHhhc
Confidence 3344444433333444556677777788888887777777665431 111000
Q ss_pred CCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-
Q 038112 462 KGWKPDM-ITYSLLINGLCQSKKIDMALKLCCQFLQK---GFTP----DVTMYNILIHGLCSAGKVEDALQLYSNMKKR- 532 (625)
Q Consensus 462 ~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 532 (625)
. ..|.. ..++.+...+...+++++|..+++...+. -+.+ -..+++.|+..|...|++++|.+++++++..
T Consensus 319 ~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 319 A-SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred c-ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 0 01111 12344444555556666666665554431 0111 2467888999999999999999999888754
Q ss_pred ---CC--CC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHc----C-CCCCH-HHHHHHHHHHhhcCChHHHHHHHHHHH
Q 038112 533 ---NC--VP-NLVTYNTLMDGLFKTGDCDKALEIWNHILEE----R-LRPDI-ISYNITLKGLCSCSRMSDAFEFLNDAL 600 (625)
Q Consensus 533 ---~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (625)
+. .+ ....++.|+..|.+.+.+.+|.++|.+...- | -.|+. .+|..|+..|.+.|++++|.++.+.+.
T Consensus 398 ~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 398 RELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11 11 2456788899999999999888888876541 1 12333 678899999999999999999998876
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.36 E-value=5.7e-09 Score=99.64 Aligned_cols=197 Identities=10% Similarity=-0.022 Sum_probs=95.1
Q ss_pred CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCC-C-HHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchh--
Q 038112 35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYC-P-EDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGIL-- 110 (625)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-- 110 (625)
|..+.++..++..+...|+.+.+.+.+....+..++. + .......+..+...|++++|...++++...+|....++
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4555566666665655666666666555555544321 1 11222233344555566666555555544444333211
Q ss_pred ----hh----cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHh
Q 038112 111 ----CR----KRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFK 182 (625)
Q Consensus 111 ----~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (625)
.. .+....+...++... ...+........+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 01 122222222222211 1112223333344455556666666666666666653 2244555556666666
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHhcCChhhHHHHHHHHH
Q 038112 183 KGDYMRAKEIWERLVMETSVYPNV--VTYNVMINGLCKCGRFDECLEMWDRMK 233 (625)
Q Consensus 183 ~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 233 (625)
.|++++|...+++........++. ..|..+...+...|++++|..++++..
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 666666666666655442111121 123345556666666666666666654
No 94
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.33 E-value=2.7e-07 Score=88.17 Aligned_cols=401 Identities=15% Similarity=0.134 Sum_probs=220.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcC
Q 038112 141 VINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCG 220 (625)
Q Consensus 141 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 220 (625)
.+.+......+..|+.+++.+.+.. ..+..|..++..|...|+++.|.++|.+. ..++..|.+|.+.|
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~----------~~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA----------DLFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc----------chhHHHHHHHhccc
Confidence 3445566778888888888887763 24556788888999999999999888653 24566788899999
Q ss_pred ChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038112 221 RFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWE 300 (625)
Q Consensus 221 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 300 (625)
+|+.|.++-++.. +++.....|..-..-.-..|.+.+|.++|-.+- .|+ ..+.+|-+.|..+..+.+..
T Consensus 806 kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 806 KWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred cHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHH
Confidence 9999998877654 445555667666677778888888888775442 233 23567778888877777766
Q ss_pred HHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH
Q 038112 301 VMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLA 380 (625)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 380 (625)
+..... -..+...+..-+-..|+...|...|-+.. .|...++.|...+.|+.|-.+-+. .+ + .
T Consensus 875 k~h~d~--l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakt---eg-g--~ 937 (1636)
T KOG3616|consen 875 KHHGDH--LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKT---EG-G--A 937 (1636)
T ss_pred HhChhh--hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhc---cc-c--c
Confidence 543321 23445566677777888888877664332 244455666666666666655431 00 0 0
Q ss_pred HHHHHHHHHhhCCCCcc--HH------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHH
Q 038112 381 DAASLVNRMDKHGCKLN--AY------TCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEA 452 (625)
Q Consensus 381 ~a~~~~~~~~~~~~~~~--~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 452 (625)
.+...+..+....+.-+ .. ....-+...+..+.++-|..+-+-..+. -.|. ....+...+...|++++|
T Consensus 938 n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~-k~~~--vhlk~a~~ledegk~eda 1014 (1636)
T KOG3616|consen 938 NAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD-KMGE--VHLKLAMFLEDEGKFEDA 1014 (1636)
T ss_pred cHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc-cCcc--chhHHhhhhhhccchhhh
Confidence 11111111111111111 11 1122233444556666666655544432 1222 223344445677888888
Q ss_pred HHHHHHHHHCCCCCCHhhHH-------------------HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038112 453 YSFVKEMLEKGWKPDMITYS-------------------LLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGL 513 (625)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~-------------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 513 (625)
-+.+-+.++.+. -..||. ..+..+.+..+|..|.++.+..-. ..-+.++..-.+..
T Consensus 1015 skhyveaiklnt--ynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~---~~l~dv~tgqar~a 1089 (1636)
T KOG3616|consen 1015 SKHYVEAIKLNT--YNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCE---DLLADVLTGQARGA 1089 (1636)
T ss_pred hHhhHHHhhccc--ccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhCh---hhhHHHHhhhhhcc
Confidence 877777665421 111111 112334444555555444332211 11133444445555
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH----------------HHHcCCCCCHHHHH
Q 038112 514 CSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNH----------------ILEERLRPDIISYN 577 (625)
Q Consensus 514 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----------------~~~~~~~p~~~~~~ 577 (625)
...|++.+|..++-+.. +|+.. ++.|...+-+..|+++.+. .+++|.+ ....|-
T Consensus 1090 iee~d~~kae~fllran----kp~i~-----l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~gar-gvd~fv 1159 (1636)
T KOG3616|consen 1090 IEEGDFLKAEGFLLRAN----KPDIA-----LNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGAR-GVDGFV 1159 (1636)
T ss_pred ccccchhhhhhheeecC----CCchH-----HHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhcccc-ccHHHH
Confidence 56677777766654433 23322 2233444555555444332 2222221 223344
Q ss_pred HHHHHHhhcCChHHHHHHHHHH
Q 038112 578 ITLKGLCSCSRMSDAFEFLNDA 599 (625)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~ 599 (625)
.-.+-.-+.|+|.+|...+-+.
T Consensus 1160 aqak~weq~gd~rkav~~~lki 1181 (1636)
T KOG3616|consen 1160 AQAKEWEQAGDWRKAVDALLKI 1181 (1636)
T ss_pred HHHHHHHhcccHHHHHHHHhhh
Confidence 4444555667777776665554
No 95
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.33 E-value=1.7e-09 Score=98.77 Aligned_cols=220 Identities=16% Similarity=0.020 Sum_probs=155.8
Q ss_pred hcCChHHHHHHHHHHHHCC-CCC--CHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhH
Q 038112 112 RKRQFEKAKRFLNSLWEKG-LKP--DVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMR 188 (625)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 188 (625)
..+..+.++..+.+++... ..| ....|......+.+.|+++.|...|++..+..+ .++..|..++..+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHH
Confidence 3456677777777777542 112 245577788888899999999999999998854 367889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112 189 AKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMV 268 (625)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 268 (625)
|.+.|++..+.. +.+..+|..++.++...|++++|++.|++..+..+ +..........+...++.++|...|.+..
T Consensus 117 A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 117 AYEAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999999998863 44567788888899999999999999999887643 22222222223445678999999997765
Q ss_pred HCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 038112 269 ESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGR-------KGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNC 341 (625)
Q Consensus 269 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 341 (625)
... .++...+ . ......|+...+ +.+..+.. ..+....+|..++..+...|++++|+..|++....++
T Consensus 193 ~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 EKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 432 2222222 2 223334555443 23433332 2223567899999999999999999999999998753
No 96
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.31 E-value=1.9e-07 Score=89.13 Aligned_cols=438 Identities=15% Similarity=0.119 Sum_probs=214.4
Q ss_pred HccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhc---CC-CCHHHHHHHHHHHHccC-
Q 038112 13 KAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQK---CY-CPEDVALSVIQAYGKNS- 87 (625)
Q Consensus 13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~l~~~~~~~~- 87 (625)
...|++++|..+++. .+-. |.....|..+....+..|+.--|.++|..+-+.. .- ....+....-..+.-.|
T Consensus 455 id~~df~ra~afles-~~~~--~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt 531 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLES-LEMG--PDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGT 531 (1636)
T ss_pred cccCchHHHHHHHHh-hccC--ccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCc
Confidence 356899999988886 4434 6667788888888888888888887776554321 00 00000000000010000
Q ss_pred CchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHH----------HCCCCCCHhHHHHHHHHHHhcCChhhHHHH
Q 038112 88 MPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLW----------EKGLKPDVYSYGTVINGLVKSGDLLGALAV 157 (625)
Q Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 157 (625)
++=..+..+..+.+.+.....++..++..++|...|+.+. ..|.|.-...-.+.++++...|+-+.|-++
T Consensus 532 ~fykvra~lail~kkfk~ae~ifleqn~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~el 611 (1636)
T KOG3616|consen 532 DFYKVRAMLAILEKKFKEAEMIFLEQNATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAEL 611 (1636)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHhcccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhh
Confidence 1112222222222222222222333333333333333221 112122222233334444444544444322
Q ss_pred HHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 038112 158 FDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNER 237 (625)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 237 (625)
-+ . +-.+ ...+..|.+.|....|......-.. ...|......+..++.+..-+++|-.+|+++.
T Consensus 612 k~----s----dgd~-laaiqlyika~~p~~a~~~a~n~~~---l~~de~il~~ia~alik~elydkagdlfeki~---- 675 (1636)
T KOG3616|consen 612 KE----S----DGDG-LAAIQLYIKAGKPAKAARAALNDEE---LLADEEILEHIAAALIKGELYDKAGDLFEKIH---- 675 (1636)
T ss_pred cc----c----cCcc-HHHHHHHHHcCCchHHHHhhcCHHH---hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhh----
Confidence 11 1 1111 2344556666665555443211100 22233344444444555555555555555543
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 038112 238 EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTY-NAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNIL 316 (625)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 316 (625)
.++ ..+.+|-+-.-+.+|+++-+-.. +...... ......+...|+++.|+..|-+.. ....-
T Consensus 676 d~d-----kale~fkkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~--------~~~ka 738 (1636)
T KOG3616|consen 676 DFD-----KALECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN--------CLIKA 738 (1636)
T ss_pred CHH-----HHHHHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh--------hHHHH
Confidence 111 12222222223444444433221 1111111 122334445566666666554432 22334
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCc
Q 038112 317 IRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKL 396 (625)
Q Consensus 317 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 396 (625)
+.+......+.+|+.+++.+..+.. .+.-|..+...|...|+++.|.++|.+
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e-------------------------- 790 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTE-------------------------- 790 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHh--------------------------
Confidence 5556667778888888877776632 334456667778888888888877762
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 038112 397 NAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLIN 476 (625)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 476 (625)
...++-.|.+|.+.|+|+.|.++-.+.. |+......|..-..-+-.+|++.+|.+++-... .|+ ..+.
T Consensus 791 -~~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiq 858 (1636)
T KOG3616|consen 791 -ADLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQ 858 (1636)
T ss_pred -cchhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHH
Confidence 2345566777888888888877765543 334445556555556667777777776664432 233 2345
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 038112 477 GLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNM 529 (625)
Q Consensus 477 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 529 (625)
.|-+.|..+..+++..+... ..-..+...+..-|...|+...|..-|-+.
T Consensus 859 mydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 859 MYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 56666666666666554322 112334445556666667776666655443
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.31 E-value=2e-08 Score=95.95 Aligned_cols=297 Identities=14% Similarity=0.028 Sum_probs=192.4
Q ss_pred CCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch----------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 038112 71 CPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI----------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGT 140 (625)
Q Consensus 71 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 140 (625)
.....+..++..+...|+++++...+....+..+..... +...|++++|...+++++... |.+...+..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~ 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH
Confidence 345677778888888899999888888877766644332 677899999999999999875 455545442
Q ss_pred HHHHHHh----cCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Q 038112 141 VINGLVK----SGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGL 216 (625)
Q Consensus 141 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 216 (625)
...+.. .+....+.+.++.. ....+........+...+...|++++|.+.+++..+.. +.+...+..+..++
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~ 158 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVL 158 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHH
Confidence 223333 34444555555441 11112223344456678899999999999999999874 55677888899999
Q ss_pred HhcCChhhHHHHHHHHHhCCCC-CCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHH-H--HHHHHHHhc
Q 038112 217 CKCGRFDECLEMWDRMKKNERE-KDS--FTYCSFIHGLCKAGNVEGAERVYREMVESGI-FVDAVTY-N--AMIDGFCRA 289 (625)
Q Consensus 217 ~~~g~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~ 289 (625)
...|++++|...+++.....+. ++. ..|..+...+...|++++|..++++...... .+..... . .++..+...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 9999999999999998865432 222 2455788899999999999999999865432 1122111 1 233333444
Q ss_pred CCHHHHHHH---HHHHHhcCC--CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--------ChhhHHHHHHHHH
Q 038112 290 GKIKECFEL---WEVMGRKGC--LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNA--------DSTTHGVLINGLC 356 (625)
Q Consensus 290 ~~~~~a~~~---~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~ 356 (625)
|....+..+ ........+ ...........++...|+.+.|..+++.+......+ .........-++.
T Consensus 239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 543333332 122111111 122333357777888999999999998887643220 1111122233566
Q ss_pred hcCCHHHHHHHHHHHH
Q 038112 357 KNGYLNKAIQILNEVE 372 (625)
Q Consensus 357 ~~~~~~~a~~~~~~~~ 372 (625)
..|+++.|...+....
T Consensus 319 ~~g~~~~A~~~L~~al 334 (355)
T cd05804 319 AEGNYATALELLGPVR 334 (355)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 8899999999888543
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1e-06 Score=85.43 Aligned_cols=413 Identities=14% Similarity=0.103 Sum_probs=217.2
Q ss_pred HHHHHHHHH--HhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHH-----------hhC
Q 038112 38 PHLFHHILR--RLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNE-----------IFG 104 (625)
Q Consensus 38 ~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~ 104 (625)
+.+--.++. .|...|+.+.|.+-.+-+. +..+|..++.++.+..+.+-|.-.+..|.. ..+
T Consensus 726 ~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 726 ESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred HHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 444444443 4557899998887766554 357999999999999999999888776632 122
Q ss_pred CCcch-----hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHH
Q 038112 105 CEAGI-----LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDG 179 (625)
Q Consensus 105 ~~~~~-----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 179 (625)
....+ ....|..++|..+|++....+ .+=..|-..|.+++|.++-+.--+..+ ..||...+..
T Consensus 800 ~e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~ 867 (1416)
T KOG3617|consen 800 EEDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKY 867 (1416)
T ss_pred cchhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHH
Confidence 22222 345566666766666655432 222334456667776666553222211 2355556666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 038112 180 FFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEG 259 (625)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 259 (625)
+...++.+.|++.|++. +...++.. +.+ ..++.....+.+++ .|...|.--....-..|+.+.
T Consensus 868 Lear~Di~~AleyyEK~--------~~hafev~-rmL--~e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 868 LEARRDIEAALEYYEKA--------GVHAFEVF-RML--KEYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred HHhhccHHHHHHHHHhc--------CChHHHHH-HHH--HhChHHHHHHHHhc------cchHHHHHHHHHHhcccchHH
Confidence 66666777777666643 11111110 000 01111112222222 244455555555566777777
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112 260 AERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREK 339 (625)
Q Consensus 260 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (625)
|+.+|+.... |..+++..+-+|+.++|-.+-++-. |..+...+.+.|-..|++.+|...|.+...
T Consensus 931 Al~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg-----d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa- 995 (1416)
T KOG3617|consen 931 ALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG-----DKAACYHLARMYENDGDVVKAVKFFTRAQA- 995 (1416)
T ss_pred HHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc-----cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-
Confidence 7777765442 4556666677777777777665533 566677778888888888888877765542
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 038112 340 NCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIF 419 (625)
Q Consensus 340 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 419 (625)
+...++.|-..+.-++-. .-....++.+...+.+.+++.. . -+...+..|-+.|.+.+|++
T Consensus 996 --------fsnAIRlcKEnd~~d~L~---nlal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALe 1056 (1416)
T KOG3617|consen 996 --------FSNAIRLCKENDMKDRLA---NLALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALE 1056 (1416)
T ss_pred --------HHHHHHHHHhcCHHHHHH---HHHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHH
Confidence 222333332222211111 1111111222222222222211 0 11223344566666666655
Q ss_pred HHHH--------HHh--CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 038112 420 LFKE--------MSR--KGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALK 489 (625)
Q Consensus 420 ~~~~--------~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 489 (625)
+--+ ++. .....|+...+.....+....+++.|..++....+. ...+. .|+..+..-..+
T Consensus 1057 lAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~Alq-lC~~~nv~vtee 1126 (1416)
T KOG3617|consen 1057 LAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGALQ-LCKNRNVRVTEE 1126 (1416)
T ss_pred HHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHH-HHhcCCCchhHH
Confidence 4321 111 223446667777777778888888888777665542 12222 233333333333
Q ss_pred HHHHHHh-CCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 038112 490 LCCQFLQ-KGFTPD----VTMYNILIHGLCSAGKVEDALQLYSNM 529 (625)
Q Consensus 490 ~~~~~~~-~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 529 (625)
+-+.|.- ++-.|+ ......++.+|.++|.+..|-+-|.++
T Consensus 1127 ~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1127 FAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 3333321 111222 235556667777777777776665544
No 99
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=3.6e-06 Score=83.63 Aligned_cols=467 Identities=14% Similarity=0.159 Sum_probs=259.4
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK 85 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (625)
.+|..--.+..++..-+..++..+... ..++.++.+++..|...++-.+- .++.++.-+ ...+.-|+.
T Consensus 842 deLv~EvEkRNRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyIDSNNnPE~------fLkeN~yYD----s~vVGkYCE 909 (1666)
T KOG0985|consen 842 DELVEEVEKRNRLKLLLPWLESLIQEG--SQDPATHNALAKIYIDSNNNPER------FLKENPYYD----SKVVGKYCE 909 (1666)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcc--CcchHHHhhhhheeecCCCChHH------hcccCCcch----hhHHhhhhc
Confidence 334433345567777777777766655 78889999999988876654432 233332111 123333444
Q ss_pred cCCchHHHHHHHHhHH----hhCCCcch--------hhhcCChH-----------HHHHHHHHHHHCCCC--CCHhHHHH
Q 038112 86 NSMPDKALDVFQRMNE----IFGCEAGI--------LCRKRQFE-----------KAKRFLNSLWEKGLK--PDVYSYGT 140 (625)
Q Consensus 86 ~~~~~~A~~~~~~~~~----~~~~~~~~--------~~~~~~~~-----------~A~~~~~~~~~~~~~--~~~~~~~~ 140 (625)
..++--|.-.|++-.. ..-++... +.++.+++ --+++.++..+..++ .|+..-..
T Consensus 910 KRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~ 989 (1666)
T KOG0985|consen 910 KRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSV 989 (1666)
T ss_pred ccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHH
Confidence 4444333322222100 00000000 11111111 112233333333221 23334444
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCC--CCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHh
Q 038112 141 VINGLVKSGDLLGALAVFDEMFERGV--ETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCK 218 (625)
Q Consensus 141 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (625)
.+.++...+-..+-+++++++.-... ..+...-+.++-... .-+..+..+..+++-.-+ .| .+......
T Consensus 990 tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyD--a~------~ia~iai~ 1060 (1666)
T KOG0985|consen 990 TVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYD--AP------DIAEIAIE 1060 (1666)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCC--ch------hHHHHHhh
Confidence 45555555556666666665543211 111111122222222 223344444444432211 11 23344455
Q ss_pred cCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 038112 219 CGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFEL 298 (625)
Q Consensus 219 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 298 (625)
.+-+++|..+|++.. .+......++.- .+..+.|.+.-++.. .+.+|..+..+-.+.|...+|++-
T Consensus 1061 ~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred hhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHH
Confidence 556666666666542 344444444432 344555555444321 456777777777777887777776
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 038112 299 WEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGR 378 (625)
Q Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 378 (625)
|-+. .++..|..++....+.|.+++-.+.+...++..-.|... ..++-+|.+.++..+..+.+.
T Consensus 1127 yika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~--------- 1190 (1666)
T KOG0985|consen 1127 YIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA--------- 1190 (1666)
T ss_pred HHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---------
Confidence 6443 367777888888888888888887777766665444433 356667777777766655543
Q ss_pred hHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 038112 379 LADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKE 458 (625)
Q Consensus 379 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 458 (625)
.|+......+.+-|...+.++.|.-+|. ++..|..+...+...|+++.|.+.-++
T Consensus 1191 ----------------gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1191 ----------------GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred ----------------CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566777778888888888888887775 344577788888888888888766555
Q ss_pred HHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 038112 459 MLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNL 538 (625)
Q Consensus 459 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 538 (625)
+ .+..+|..+..+|...+.+.-|. +-..++-....-...++..|...|-+++-+.+++..... -+...
T Consensus 1246 A------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL-ERAHM 1313 (1666)
T KOG0985|consen 1246 A------NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL-ERAHM 1313 (1666)
T ss_pred c------cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch-hHHHH
Confidence 3 35678888888888777766542 222333345566777888888889998888888877643 12334
Q ss_pred HHHHHHHHHHHccCChhHHHHHH
Q 038112 539 VTYNTLMDGLFKTGDCDKALEIW 561 (625)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~A~~~~ 561 (625)
-.|+.|+-.|.+- ++++-.+.+
T Consensus 1314 gmfTELaiLYsky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1314 GMFTELAILYSKY-KPEKMMEHL 1335 (1666)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHH
Confidence 5667777666654 344444433
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.24 E-value=4.8e-06 Score=90.47 Aligned_cols=376 Identities=9% Similarity=-0.043 Sum_probs=231.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 038112 175 ILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKA 254 (625)
Q Consensus 175 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 254 (625)
..+..+...|++.+|...+..... ...-..............|+++.+..+++.+.......++.........+...
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGD---AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCC---HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 344456667777766654443211 00001111222334556778877777776653221122333334455566778
Q ss_pred CCHHHHHHHHHHHHHCCC------CcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-c----HHHHHHHHHHHH
Q 038112 255 GNVEGAERVYREMVESGI------FVD--AVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-N----VVSYNILIRGLL 321 (625)
Q Consensus 255 ~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~l~~~~~ 321 (625)
|+++++...+......-. .+. ......+...+...|++++|...++......+. + ..+...+...+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 999999998887754311 111 122233445567889999999999987764322 2 234566777788
Q ss_pred hCCCHHHHHHHHHHHHHcCCC---C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCC--
Q 038112 322 ENGKVDEAISIWELLREKNCN---A--DSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGC-- 394 (625)
Q Consensus 322 ~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-- 394 (625)
..|++++|...+++....... + .......+...+...|+++.|...+++... + ....+.
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~-----------~---~~~~~~~~ 568 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQ-----------L---IEEQHLEQ 568 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------H---HHHhcccc
Confidence 899999999999887753111 1 123445566778899999999999885432 1 112221
Q ss_pred -CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC--CCCC
Q 038112 395 -KLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKG--CSP--TVVSYNTLINGLCKVERFGEAYSFVKEMLEKG--WKPD 467 (625)
Q Consensus 395 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~ 467 (625)
......+..+...+...|++++|...+.+..... ..+ ....+..+...+...|++++|...+..+.... ....
T Consensus 569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~ 648 (903)
T PRK04841 569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYH 648 (903)
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 1123334556667778899999999998876531 111 12344456667788999999999998875421 1111
Q ss_pred Hh--hH--HHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCC
Q 038112 468 MI--TY--SLLINGLCQSKKIDMALKLCCQFLQKGFTPD---VTMYNILIHGLCSAGKVEDALQLYSNMKKR----NCVP 536 (625)
Q Consensus 468 ~~--~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~ 536 (625)
.. .. ...+..+...|+.+.|...+........... ...+..+..++...|++++|...++++... |...
T Consensus 649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~ 728 (903)
T PRK04841 649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS 728 (903)
T ss_pred HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH
Confidence 10 10 1122344567899999998877654211111 112346777888999999999999988753 2222
Q ss_pred C-HHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 038112 537 N-LVTYNTLMDGLFKTGDCDKALEIWNHILEE 567 (625)
Q Consensus 537 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 567 (625)
+ ..+...++.++...|+.++|...+.++++.
T Consensus 729 ~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 729 DLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 346677888899999999999999999984
No 101
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.19 E-value=4.9e-06 Score=81.86 Aligned_cols=483 Identities=14% Similarity=0.086 Sum_probs=233.7
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHC
Q 038112 50 DPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEK 129 (625)
Q Consensus 50 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 129 (625)
..+++..|....+.+++..|. .......=+-.+.+.|+.++|..+++.. ...
T Consensus 21 d~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~---------------------------~~~ 72 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEAL---------------------------YGL 72 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhh---------------------------ccC
Confidence 456666666666666666432 1111111112234555555555554443 333
Q ss_pred CCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchH
Q 038112 130 GLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTY 209 (625)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 209 (625)
+ +.|..+...+-.+|.+.+..++|..+|+++... -|+......+..+|.+.+.+.+-.+.--++-+. .+.+...+
T Consensus 73 ~-~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyf 147 (932)
T KOG2053|consen 73 K-GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYF 147 (932)
T ss_pred C-CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchH
Confidence 2 236666777777777777777777777777765 334555566666777766665544433333332 33444444
Q ss_pred HHHHHHHHhcC-C---------hhhHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCcCHH
Q 038112 210 NVMINGLCKCG-R---------FDECLEMWDRMKKNE-REKDSFTYCSFIHGLCKAGNVEGAERVY-REMVESGIFVDAV 277 (625)
Q Consensus 210 ~~l~~~~~~~g-~---------~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~ 277 (625)
-.++....+.- . ..-|.+.++.+.+.+ ..-+..-...-.......|.+++|.+++ ....+.-...+..
T Consensus 148 WsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~ 227 (932)
T KOG2053|consen 148 WSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLY 227 (932)
T ss_pred HHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchH
Confidence 44444444321 1 112444455554433 1111111222223344567788888777 3333332333444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH----HHHHHHH---------HhCCCHHHHHHHHHHHHHcCCCCC
Q 038112 278 TYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSY----NILIRGL---------LENGKVDEAISIWELLREKNCNAD 344 (625)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~l~~~~---------~~~~~~~~a~~~~~~~~~~~~~~~ 344 (625)
.-+.-+..+...+++.+..++-.++...++++-..| ..++... ...+..+...+...+......
T Consensus 228 l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~--- 304 (932)
T KOG2053|consen 228 LENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKS--- 304 (932)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccc---
Confidence 445566677777788887777777777766651111 1111110 011112222222222221111
Q ss_pred hhhHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 038112 345 STTHGVLING---LCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLF 421 (625)
Q Consensus 345 ~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 421 (625)
...+..-+.+ +...|+.+++...|- .+-|..| .+..=+..|...=..++...++
T Consensus 305 Rgp~LA~lel~kr~~~~gd~ee~~~~y~--------------------~kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~ 361 (932)
T KOG2053|consen 305 RGPYLARLELDKRYKLIGDSEEMLSYYF--------------------KKFGDKP---CCAIDLNHYLGHLNIDQLKSLM 361 (932)
T ss_pred cCcHHHHHHHHHHhcccCChHHHHHHHH--------------------HHhCCCc---HhHhhHHHhhccCCHHHHHHHH
Confidence 1111111111 223344444433322 1111111 1222223333333344444444
Q ss_pred HHHHhCCCCCChh-------hHHHHHHHHhccC-----CHHHHHHHHHHHH---HCC------CCCCHh---------hH
Q 038112 422 KEMSRKGCSPTVV-------SYNTLINGLCKVE-----RFGEAYSFVKEML---EKG------WKPDMI---------TY 471 (625)
Q Consensus 422 ~~~~~~~~~~~~~-------~~~~l~~~~~~~~-----~~~~a~~~~~~~~---~~~------~~~~~~---------~~ 471 (625)
...... .++.. -+...+..-...| ..+.-..++.++. +.| +-|+.. +.
T Consensus 362 ~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav 439 (932)
T KOG2053|consen 362 SKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAV 439 (932)
T ss_pred HHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHH
Confidence 444332 11111 0111111111122 2233344443332 222 222222 34
Q ss_pred HHHHHHHhccCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038112 472 SLLINGLCQSKKID---MALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGL 548 (625)
Q Consensus 472 ~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (625)
+.++..|.+.++.. +|+-+++...... +.|..+-..+++.|+-.|-+..|.++|..+--.++..|...|. +..-+
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~ 517 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRA 517 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHH
Confidence 56777888888765 4555555555542 4456666778899999999999999999887666666655443 34456
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHH
Q 038112 549 FKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFL 596 (625)
Q Consensus 549 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 596 (625)
...|++..+...++..... +..+..--..++..-++.|.+++-.++.
T Consensus 518 ~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr~g~ySkI~em~ 564 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYRRGAYSKIPEML 564 (932)
T ss_pred HhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHHcCchhhhHHHH
Confidence 6788999999998888772 1112222223344444566666554443
No 102
>PF13041 PPR_2: PPR repeat family
Probab=99.18 E-value=9.1e-11 Score=73.88 Aligned_cols=50 Identities=28% Similarity=0.729 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 038112 571 PDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMN 620 (625)
Q Consensus 571 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 620 (625)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888888764
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=5.1e-09 Score=96.98 Aligned_cols=224 Identities=9% Similarity=0.033 Sum_probs=154.3
Q ss_pred hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHH
Q 038112 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA 189 (625)
Q Consensus 110 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 189 (625)
+.+.|+..+|.-.|+..++.+ |.+..+|..|......+++-..|+..+++..+..+. +......|+..|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 777888888888888888776 667778888888888888888888888888877533 667777788888888888888
Q ss_pred HHHHHHHHhCCCCCCCcchHHH----H-H--HHHHhcCChhhHHHHHHHHH-hCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 038112 190 KEIWERLVMETSVYPNVVTYNV----M-I--NGLCKCGRFDECLEMWDRMK-KNEREKDSFTYCSFIHGLCKAGNVEGAE 261 (625)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~----l-~--~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 261 (625)
...++..+... +|-...-.. . . ..+.....+....++|-++. ..+..+|+.+...|.-.|.-.|++++|+
T Consensus 373 l~~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 88877775532 110000000 0 0 01111122233344444443 3333467777777777777888888888
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 038112 262 RVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLRE 338 (625)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (625)
+.|+.++...+. |...|+.|...++...+.++|+..|.++.+..|.-+.++..|...|...|.+++|.+.|-..+.
T Consensus 451 Dcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 888888776433 6677888888888888888888888888888777778888888888888888888877765543
No 104
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.15 E-value=5.5e-06 Score=76.70 Aligned_cols=133 Identities=16% Similarity=0.146 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 038112 398 AYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSP-TVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLIN 476 (625)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 476 (625)
.-+|...++...+..-+..|+.+|.+..+.+..+ ++..+++++.-++. ++..-|.++|+--.+. ...+..-....+.
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~Yld 443 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLD 443 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHH
Confidence 3467778888888888899999999988876655 66677888876654 7788899999876654 2333444455666
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 038112 477 GLCQSKKIDMALKLCCQFLQKGFTPD--VTMYNILIHGLCSAGKVEDALQLYSNMKKR 532 (625)
Q Consensus 477 ~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 532 (625)
.+...++-..+..+|++.+..+++|+ ..+|..++..-+.-|+...+.++-++....
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 77788888889999999888755554 568888888888889988888887777654
No 105
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.13 E-value=6.7e-06 Score=76.14 Aligned_cols=151 Identities=13% Similarity=0.115 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHH
Q 038112 449 FGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTP-DVTMYNILIHGLCSAGKVEDALQLYS 527 (625)
Q Consensus 449 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 527 (625)
.+.....++++...-...-..+|..+++.-.+..-+..|..+|.++.+.+..+ ++.+.++++..|+ .++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 55556666666553222223467777888888888999999999999876665 6778888888665 688899999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 528 NMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI--ISYNITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 528 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
.-.+. ...++......+..+...|+-..|..+|++++..++.|+. .+|..++.--..-|+...++++-+++..
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 88876 5556777778888889999999999999999998777754 7899999888888999999999888764
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.11 E-value=7.3e-09 Score=92.88 Aligned_cols=244 Identities=16% Similarity=0.118 Sum_probs=142.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHH
Q 038112 112 RKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKE 191 (625)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 191 (625)
-.|+|..++.-.+ ....+.+.+......+.+++...|+++.++ .++... .+|.......+...+...++-+.++.
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHHHHH
Confidence 3566666665444 222221223334455666777777766443 333333 25555555555555554455566665
Q ss_pred HHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038112 192 IWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESG 271 (625)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 271 (625)
-++..........+.........++...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+.+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~ 161 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID 161 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55554433211122222233335566678888888777542 355666677788888888888888888887653
Q ss_pred CCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhh
Q 038112 272 IFVDAVTYNAMIDGFCR----AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTT 347 (625)
Q Consensus 272 ~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 347 (625)
+..+...++.++.. .+.+.+|..+|+++....++++...+.++.++...|++++|.+++.+....+.. ++.+
T Consensus 162 ---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~ 237 (290)
T PF04733_consen 162 ---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDT 237 (290)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHH
T ss_pred ---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHH
Confidence 23444444444432 345888888888887776667788888888888888888888888887766543 6667
Q ss_pred HHHHHHHHHhcCCH-HHHHHHHHH
Q 038112 348 HGVLINGLCKNGYL-NKAIQILNE 370 (625)
Q Consensus 348 ~~~l~~~~~~~~~~-~~a~~~~~~ 370 (625)
+..++......|+. +.+.+.+.+
T Consensus 238 LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 238 LANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHH
Confidence 77777777777776 555566653
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.11 E-value=3.3e-07 Score=99.40 Aligned_cols=363 Identities=12% Similarity=0.014 Sum_probs=230.6
Q ss_pred HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112 7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN 86 (625)
Q Consensus 7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (625)
..+..+...|++.+|+..+..+-.. +.-.......+..+...|++..+...+..+.......++......+..+...
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 3455667788888888766553211 1112223334445667788887777766652211112334445566677788
Q ss_pred CCchHHHHHHHHhHHhhCCC-----cc-----------hhhhcCChHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHH
Q 038112 87 SMPDKALDVFQRMNEIFGCE-----AG-----------ILCRKRQFEKAKRFLNSLWEKGLKPDV----YSYGTVINGLV 146 (625)
Q Consensus 87 ~~~~~A~~~~~~~~~~~~~~-----~~-----------~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~ 146 (625)
|++++|..++..+....... +. ++...|++++|...+++.+......+. ...+.+...+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 99999999998775432221 11 156789999999999998764212222 23455666777
Q ss_pred hcCChhhHHHHHHHHHhCCCC-----CCchhhHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCC---CcchHHHHHHH
Q 038112 147 KSGDLLGALAVFDEMFERGVE-----TNVVCYNILIDGFFKKGDYMRAKEIWERLVMET---SVYP---NVVTYNVMING 215 (625)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~---~~~~~~~l~~~ 215 (625)
..|++++|...+++....... ....++..+...+...|++++|...+++..... +... ....+..+...
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 899999999999888753111 112345566778889999999999888765531 1111 12234455667
Q ss_pred HHhcCChhhHHHHHHHHHhC----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCcCHH--HH--HHHHHH
Q 038112 216 LCKCGRFDECLEMWDRMKKN----EREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESG--IFVDAV--TY--NAMIDG 285 (625)
Q Consensus 216 ~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~ 285 (625)
+...|++++|...+++.... +.......+..+...+...|++++|...+....... ...... .. ...+..
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 78889999999998887542 111123345556677889999999999998885431 111111 11 112244
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHH
Q 038112 286 FCRAGKIKECFELWEVMGRKGCLNV----VSYNILIRGLLENGKVDEAISIWELLREK----NCNA-DSTTHGVLINGLC 356 (625)
Q Consensus 286 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~ 356 (625)
+...|+.+.|..++........... ..+..+..++...|++++|...++..... +... ...+...+..++.
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 5568899999999877654322222 12456778888999999999999887754 2221 1234556677889
Q ss_pred hcCCHHHHHHHHHHHH
Q 038112 357 KNGYLNKAIQILNEVE 372 (625)
Q Consensus 357 ~~~~~~~a~~~~~~~~ 372 (625)
..|+.++|...+.+..
T Consensus 743 ~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 743 QQGRKSEAQRVLLEAL 758 (903)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 9999999999998644
No 108
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.09 E-value=7.3e-09 Score=92.87 Aligned_cols=149 Identities=17% Similarity=0.142 Sum_probs=65.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc----cC
Q 038112 407 GFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQ----SK 482 (625)
Q Consensus 407 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 482 (625)
.+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+. ..| .+...+..++.. .+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCch
Confidence 344445555555544321 13344444445555555555555555555442 112 222233332221 12
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh-hHHHHHH
Q 038112 483 KIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDC-DKALEIW 561 (625)
Q Consensus 483 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~ 561 (625)
.+.+|..+|+++.+. .++++.+.+.++.+....|++++|.+++.+....+ +.++.++..++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 345555555554443 23445555555555555555555555555544432 23344444455554555544 3344444
Q ss_pred HHHHH
Q 038112 562 NHILE 566 (625)
Q Consensus 562 ~~~~~ 566 (625)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 44444
No 109
>PF13041 PPR_2: PPR repeat family
Probab=99.07 E-value=4.6e-10 Score=70.64 Aligned_cols=49 Identities=59% Similarity=1.057 Sum_probs=23.8
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHh
Q 038112 431 PTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLC 479 (625)
Q Consensus 431 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 479 (625)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 110
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.05 E-value=2.7e-05 Score=76.88 Aligned_cols=547 Identities=15% Similarity=0.119 Sum_probs=275.8
Q ss_pred HHHHHHH--HccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 038112 6 KRLLNLL--KAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAY 83 (625)
Q Consensus 6 ~~l~~~l--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (625)
+++.-++ ...+++..|++-....+++. |..+.+...-+-.+.+.|+.++|..+++.....+ +.+..++..+-.+|
T Consensus 11 rr~rpi~d~ld~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y 87 (932)
T KOG2053|consen 11 RRLRPIYDLLDSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVY 87 (932)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHH
Confidence 3444444 47789999999999999887 7777666666667889999999998888777664 44778888899999
Q ss_pred HccCCchHHHHHHHHhHHhhCCCcch------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-Chh----
Q 038112 84 GKNSMPDKALDVFQRMNEIFGCEAGI------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSG-DLL---- 152 (625)
Q Consensus 84 ~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~---- 152 (625)
-..+.+++|..+|+++.+.+|..-.. |.+.++|.+-.+.--++.+ +.|.++..+-.+++.....- ..+
T Consensus 88 ~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 88 RDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred HHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCccccc
Confidence 99999999999999998887773222 5666666554444444443 23445555555555444321 111
Q ss_pred -----hHHHHHHHHHhCCCCC-CchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHH
Q 038112 153 -----GALAVFDEMFERGVET-NVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECL 226 (625)
Q Consensus 153 -----~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 226 (625)
-|...++.+.+.+.+. +..-...-...+...|.+++|.+++..-....-...+...-+.-+..+...+++.+..
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence 1333444444332111 1111222223334456666666665322111101112222233445555566666666
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038112 227 EMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKG 306 (625)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 306 (625)
++..++...+. |. |...+.. +++-+.....+| .. ..+...+..+...+..++.....
T Consensus 247 ~l~~~Ll~k~~--Dd--y~~~~~s------------v~klLe~~~~~~-a~------~~~s~~~~l~~~~ek~~~~i~~~ 303 (932)
T KOG2053|consen 247 ELSSRLLEKGN--DD--YKIYTDS------------VFKLLELLNKEP-AE------AAHSLSKSLDECIEKAQKNIGSK 303 (932)
T ss_pred HHHHHHHHhCC--cc--hHHHHHH------------HHHHHHhccccc-ch------hhhhhhhhHHHHHHHHHHhhccc
Confidence 66555555432 11 2211111 111111110011 00 01112223333333333333221
Q ss_pred CCcH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHH
Q 038112 307 CLNV-VSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASL 385 (625)
Q Consensus 307 ~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ 385 (625)
...+ -++..+..-+..-|+.+++.-.|-+-... . ..+..=+..|...=..+.-..++........... .....
T Consensus 304 ~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~--k---pcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s-~~~k~ 377 (932)
T KOG2053|consen 304 SRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGD--K---PCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSS-GDEKV 377 (932)
T ss_pred ccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCC--C---cHhHhhHHHhhccCCHHHHHHHHHHhhccCCcch-hhHHH
Confidence 1111 12222222233446666655443222111 1 1111112222222222222222222211111000 00000
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHHhcC-----CHHHHHHHHHHHH---hC------CCCCChh---------hHHHHHHH
Q 038112 386 VNRMDKHGCKLNAYTCNSLMNGFIQAS-----KLENAIFLFKEMS---RK------GCSPTVV---------SYNTLING 442 (625)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~---~~------~~~~~~~---------~~~~l~~~ 442 (625)
+.+ +...+..-...| ..+.-..++.+.. ++ +.-|+.. +-+.+++.
T Consensus 378 l~~------------h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~ 445 (932)
T KOG2053|consen 378 LQQ------------HLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDL 445 (932)
T ss_pred HHH------------HHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHH
Confidence 000 000111111111 1122222222211 11 2223332 23567788
Q ss_pred HhccCCHH---HHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH
Q 038112 443 LCKVERFG---EAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKV 519 (625)
Q Consensus 443 ~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 519 (625)
+.+.++.. +|+-+++.-... -+.+..+-..+++.|.-.|-+..|.++++.+--+.+..|..-|. +...+...|++
T Consensus 446 ~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~ 523 (932)
T KOG2053|consen 446 WRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRS 523 (932)
T ss_pred HHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccc
Confidence 88888766 445555554443 24456666788999999999999999999887666666655443 34556788999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH---HHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHH
Q 038112 520 EDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNH---ILEERLRPDIISYNITLKGLCSCSRMSDAFEFL 596 (625)
Q Consensus 520 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 596 (625)
..+...++...+. ...+..---.++....+.|.+.+..++..- +..+-..--..+-+..++..+..++.++-.+.+
T Consensus 524 ~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~ 602 (932)
T KOG2053|consen 524 SFASNTFNEHLKF-YDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLL 602 (932)
T ss_pred hhHHHHHHHHHHH-HhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 9999999888764 222322223344444577888877665322 211111112234456666777788888888888
Q ss_pred HHHH
Q 038112 597 NDAL 600 (625)
Q Consensus 597 ~~~~ 600 (625)
..|.
T Consensus 603 ~~~~ 606 (932)
T KOG2053|consen 603 ESMK 606 (932)
T ss_pred hccc
Confidence 8886
No 111
>PLN02789 farnesyltranstransferase
Probab=99.05 E-value=1.2e-07 Score=86.33 Aligned_cols=227 Identities=11% Similarity=0.016 Sum_probs=119.3
Q ss_pred HHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCC
Q 038112 10 NLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPK-LVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSM 88 (625)
Q Consensus 10 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (625)
.++...++.++|+..+..+++.+ |.+..+|.....++...| ++++++..++.++..++ .+..+|.....++.+.|+
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCc
Confidence 44445555556666665555555 555555555555555554 34555555555555543 244455544444433333
Q ss_pred chHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 038112 89 PDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVET 168 (625)
Q Consensus 89 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 168 (625)
. ..++++.+++++++.+ +.+..+|+....++...|+++++++.++++++.++.
T Consensus 122 ~-------------------------~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~- 174 (320)
T PLN02789 122 D-------------------------AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR- 174 (320)
T ss_pred h-------------------------hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-
Confidence 2 0133444455555544 345556666666666666666666666666665443
Q ss_pred CchhhHHHHHHHHhc---CCh----hHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhc----CChhhHHHHHHHHHhCCC
Q 038112 169 NVVCYNILIDGFFKK---GDY----MRAKEIWERLVMETSVYPNVVTYNVMINGLCKC----GRFDECLEMWDRMKKNER 237 (625)
Q Consensus 169 ~~~~~~~l~~~~~~~---g~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~ 237 (625)
+..+|+....++.+. |.. ++.++....++.. .+.|..+|+.+...+... +...+|.+.+.+....++
T Consensus 175 N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 175 NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 444555544444333 212 3455555455544 245556666666655552 233456666666554332
Q ss_pred CCChhhHHHHHHHHHhcC------------------CHHHHHHHHHHHHH
Q 038112 238 EKDSFTYCSFIHGLCKAG------------------NVEGAERVYREMVE 269 (625)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~------------------~~~~a~~~~~~~~~ 269 (625)
.+......|+..|+... ..++|.+++..+.+
T Consensus 253 -~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 301 (320)
T PLN02789 253 -NHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEV 301 (320)
T ss_pred -CcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHh
Confidence 34455555666555421 34678888888843
No 112
>PLN02789 farnesyltranstransferase
Probab=99.02 E-value=3.1e-07 Score=83.65 Aligned_cols=221 Identities=12% Similarity=0.044 Sum_probs=142.3
Q ss_pred cCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-ChhhHHHHHHHHHhC
Q 038112 86 NSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSG-DLLGALAVFDEMFER 164 (625)
Q Consensus 86 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 164 (625)
.+++.+|..+|+.+. ...+..++|+.++++++..+ |.+..+|+.-...+...| ++++++..++++.+.
T Consensus 33 ~~~~~~a~~~~ra~l----------~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~ 101 (320)
T PLN02789 33 TPEFREAMDYFRAVY----------ASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAED 101 (320)
T ss_pred CHHHHHHHHHHHHHH----------HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH
Confidence 356666666666663 34566777777777777765 445556666666666666 567888888888776
Q ss_pred CCCCCchhhHHHHHHHHhcCCh--hHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChh
Q 038112 165 GVETNVVCYNILIDGFFKKGDY--MRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSF 242 (625)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 242 (625)
+++ +..+|+....++.+.|+. +++...++.+.+.+ +.+..+|+...-++...|+++++++.++++++.++ .+..
T Consensus 102 npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~s 177 (320)
T PLN02789 102 NPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNS 177 (320)
T ss_pred CCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-Cchh
Confidence 443 555666555555555553 56677777777653 56677777777777777888888888888877664 3555
Q ss_pred hHHHHHHHHHhc---CC----HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCcHH
Q 038112 243 TYCSFIHGLCKA---GN----VEGAERVYREMVESGIFVDAVTYNAMIDGFCRA----GKIKECFELWEVMGRKGCLNVV 311 (625)
Q Consensus 243 ~~~~l~~~~~~~---~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~ 311 (625)
.|+.....+... |. .++.+....+++...+. +...|+.+..++... +...+|.+.+.+.....+.+..
T Consensus 178 AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~ 256 (320)
T PLN02789 178 AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVF 256 (320)
T ss_pred HHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHH
Confidence 666555444433 22 23556666666665433 666676666666552 3345677777777666666777
Q ss_pred HHHHHHHHHHh
Q 038112 312 SYNILIRGLLE 322 (625)
Q Consensus 312 ~~~~l~~~~~~ 322 (625)
+...|+..|..
T Consensus 257 al~~l~d~~~~ 267 (320)
T PLN02789 257 ALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHh
Confidence 77777777765
No 113
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.99 E-value=6.6e-05 Score=76.87 Aligned_cols=241 Identities=9% Similarity=0.044 Sum_probs=172.0
Q ss_pred CCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhc
Q 038112 34 YAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRK 113 (625)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 113 (625)
.|.+..++..|+..+...+++++|.++.+..++..| .....+..++..+...+++.++..+ .+.... ...
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~-------~~~ 96 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL--NLIDSF-------SQN 96 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh--hhhhhc-------ccc
Confidence 488899999999999999999999999998888864 4566677777788999998888877 443322 234
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHH
Q 038112 114 RQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIW 193 (625)
Q Consensus 114 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 193 (625)
.++....-+...+...+ .+..++..+..+|-+.|+.++|..+++++.+.+ +-|+.+.+.++..|... ++++|++++
T Consensus 97 ~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 45655555555665543 566788889999999999999999999999987 44888999999999988 999999998
Q ss_pred HHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC
Q 038112 194 ERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVES-GI 272 (625)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~ 272 (625)
.+.+.. +...+++..+.+++.++....+. +...+..+.+ .+... +.
T Consensus 173 ~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~----------------ki~~~~~~ 219 (906)
T PRK14720 173 KKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIER----------------KVLGHREF 219 (906)
T ss_pred HHHHHH----------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHH----------------HHHhhhcc
Confidence 887543 66667788888888877755331 2222222222 22211 11
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 038112 273 FVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLL 321 (625)
Q Consensus 273 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (625)
.--..++..+-..|-...+++++..+++.+....+.|..+...++.+|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 1223444455556666677777777777777777777777777777665
No 114
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.98 E-value=6.9e-08 Score=85.81 Aligned_cols=182 Identities=14% Similarity=0.108 Sum_probs=121.9
Q ss_pred CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch---
Q 038112 35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCP--EDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI--- 109 (625)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--- 109 (625)
+..+..+..++..+...|++++|...++.+++..|... ...+..++.++.+.|++++|...++++.+.+|..+.+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 56677777888888888888888888888887764321 2466777888888888888888888887777766652
Q ss_pred -------hhh--------cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhH
Q 038112 110 -------LCR--------KRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYN 174 (625)
Q Consensus 110 -------~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 174 (625)
+.. .|++++|...|+++.... |.+...+..+..... ... ... ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~~--------~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HHH--------HHHH
Confidence 222 267888888888888765 233333322221111 000 000 1123
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112 175 ILIDGFFKKGDYMRAKEIWERLVMETSVYP-NVVTYNVMINGLCKCGRFDECLEMWDRMKKN 235 (625)
Q Consensus 175 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (625)
.++..+...|++++|+..++.+....+..| ....+..++.++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566778888899999888888877642122 3457788888888899999998888887754
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.97 E-value=4.5e-07 Score=86.79 Aligned_cols=216 Identities=13% Similarity=0.069 Sum_probs=175.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038112 347 THGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSR 426 (625)
Q Consensus 347 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 426 (625)
.-..+...+...|-...|..+++ ....|..++.+|...|+..+|..+..+..+
T Consensus 400 ~q~~laell~slGitksAl~I~E---------------------------rlemw~~vi~CY~~lg~~~kaeei~~q~le 452 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFE---------------------------RLEMWDPVILCYLLLGQHGKAEEINRQELE 452 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHH---------------------------hHHHHHHHHHHHHHhcccchHHHHHHHHhc
Confidence 34556778888999999999988 445678889999999999999999988887
Q ss_pred CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038112 427 KGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMY 506 (625)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 506 (625)
+ +|++..|..+++......-++.|.++.+..... .-..+.......++++++.+.|+.-.+.+ +.-..+|
T Consensus 453 k--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~w 522 (777)
T KOG1128|consen 453 K--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTW 522 (777)
T ss_pred C--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHH
Confidence 4 788999999999888888888998888765432 11122222344789999999999888764 4467889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 038112 507 NILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSC 586 (625)
Q Consensus 507 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 586 (625)
..+..+..+.++++.|.+.|...... -+.+...|+++..+|.+.|+..+|...++++++.+ .-+..+|........+.
T Consensus 523 f~~G~~ALqlek~q~av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdv 600 (777)
T KOG1128|consen 523 FGLGCAALQLEKEQAAVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDV 600 (777)
T ss_pred HhccHHHHHHhhhHHHHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhc
Confidence 99999999999999999999999985 24458899999999999999999999999999965 33556677777777899
Q ss_pred CChHHHHHHHHHHHH
Q 038112 587 SRMSDAFEFLNDALC 601 (625)
Q Consensus 587 g~~~~A~~~~~~~~~ 601 (625)
|.+++|++.++++.+
T Consensus 601 ge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 601 GEFEDAIKAYHRLLD 615 (777)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999999874
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.97 E-value=5.8e-07 Score=92.12 Aligned_cols=186 Identities=14% Similarity=0.097 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038112 399 YTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGL 478 (625)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 478 (625)
..|.++++.-...|.-+...++|+++.+.. .....|..|...|.+.+.+++|.++++.|.+. +......|...+..+
T Consensus 1498 NiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1498 NIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFL 1574 (1710)
T ss_pred HHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHH
Confidence 356677777777778888889999988752 23457888899999999999999999999986 445678899999999
Q ss_pred hccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHH
Q 038112 479 CQSKKIDMALKLCCQFLQKGFT-PDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKA 557 (625)
Q Consensus 479 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 557 (625)
.+..+-+.|..++.++++.-.. .........+..-.+.|+.+.+..+|+..... .|.-...|+.+++.-.++|+.+.+
T Consensus 1575 l~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~v 1653 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYV 1653 (1710)
T ss_pred hcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHH
Confidence 9999999999999998885211 13455566677778999999999999999886 455688999999999999999999
Q ss_pred HHHHHHHHHcCCCCC-HH-HHHHHHHHHhh-cCCh
Q 038112 558 LEIWNHILEERLRPD-II-SYNITLKGLCS-CSRM 589 (625)
Q Consensus 558 ~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~-~g~~ 589 (625)
+.+|+++++.++.|- .. .|..++ .|-+ .|+-
T Consensus 1654 R~lfeRvi~l~l~~kkmKfffKkwL-eyEk~~Gde 1687 (1710)
T KOG1070|consen 1654 RDLFERVIELKLSIKKMKFFFKKWL-EYEKSHGDE 1687 (1710)
T ss_pred HHHHHHHHhcCCChhHhHHHHHHHH-HHHHhcCch
Confidence 999999999888873 33 333333 3443 3553
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.97 E-value=1e-07 Score=84.77 Aligned_cols=58 Identities=10% Similarity=0.108 Sum_probs=28.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038112 212 MINGLCKCGRFDECLEMWDRMKKNERE--KDSFTYCSFIHGLCKAGNVEGAERVYREMVE 269 (625)
Q Consensus 212 l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 269 (625)
+...+.+.|++++|+..+++.....+. .....+..++.++...|++++|...++.+..
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334455555555555555555443221 1233444555555555555555555554443
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.94 E-value=2.6e-07 Score=88.43 Aligned_cols=222 Identities=13% Similarity=0.061 Sum_probs=128.3
Q ss_pred CCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHH
Q 038112 132 KPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNV 211 (625)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 211 (625)
+|--..-..+...+...|-...|..+|++.. .|..++.+|...|+..+|..+..+..+. +|+...|..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~ 462 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCL 462 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHH
Confidence 3433344445555566666666666666432 3444566666666666666666655542 456666666
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 038112 212 MINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGK 291 (625)
Q Consensus 212 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (625)
+++......-+++|.++.+.... ..-..+.....+.++++++.+.|+.-.+.. +....+|..+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 66655555556666666554432 112222222334566666666666665543 2245666666666666666
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038112 292 IKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEV 371 (625)
Q Consensus 292 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 371 (625)
++.|.+.|.......|.+..+|+++..+|.+.++-.+|...+.+..+-+. -+...|...+....+.|.++.|.+.+.++
T Consensus 535 ~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666552 23444555555556666666666666665
Q ss_pred Hhc
Q 038112 372 EEG 374 (625)
Q Consensus 372 ~~~ 374 (625)
...
T Consensus 614 l~~ 616 (777)
T KOG1128|consen 614 LDL 616 (777)
T ss_pred HHh
Confidence 544
No 119
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.92 E-value=1.9e-08 Score=80.37 Aligned_cols=95 Identities=9% Similarity=-0.100 Sum_probs=53.4
Q ss_pred HHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC
Q 038112 8 LLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS 87 (625)
Q Consensus 8 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (625)
++.++...|++++|+..|+.++..+ |.+..++..++.++.+.|++++|...|+.++..+| .+...+..++.++...|
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcC
Confidence 3455555556666666666555555 55555555555555555666666666666655542 35555555555555555
Q ss_pred CchHHHHHHHHhHHhhCC
Q 038112 88 MPDKALDVFQRMNEIFGC 105 (625)
Q Consensus 88 ~~~~A~~~~~~~~~~~~~ 105 (625)
++++|+..|+.+....|.
T Consensus 107 ~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYA 124 (144)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 555555555555444333
No 120
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.89 E-value=1.4e-06 Score=89.44 Aligned_cols=220 Identities=11% Similarity=0.051 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCC---CchhhHHHHHHHHhcCChhHHHHHH
Q 038112 118 KAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER-GVET---NVVCYNILIDGFFKKGDYMRAKEIW 193 (625)
Q Consensus 118 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~ 193 (625)
.|.. |++.+..+ |.....|...+......++.+.|+++++++... ++.- -...|.++++.....|.-+...++|
T Consensus 1443 saeD-ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAED-FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHH-HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 3444 44444433 566778999999999999999999999999876 2211 1236778888888889899999999
Q ss_pred HHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 038112 194 ERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIF 273 (625)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 273 (625)
+++.+.. .....|..|...|.+.+.+++|-++++.|.+.-- .....|...+..+.+..+-+.|..++.++++.-++
T Consensus 1521 eRAcqyc---d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1521 ERACQYC---DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHhc---chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 9998752 3345788999999999999999999999987543 46778999999999999999999999999886322
Q ss_pred c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 038112 274 V-DAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNA 343 (625)
Q Consensus 274 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 343 (625)
. ........+..-.+.|+.+.+..+|+......|.....|+.+++.-.+.|+.+.+..+|+++...++.|
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 1 234455566677789999999999999999999999999999999999999999999999999997765
No 121
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=2.1e-06 Score=71.39 Aligned_cols=204 Identities=15% Similarity=0.128 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHhhC---C-CCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 038112 362 NKAIQILNEVEEGGEGRLADAASLVNRMDKH---G-CKLNAY-TCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSY 436 (625)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 436 (625)
++....++...+....+.++..++...+... + ..++.. .+..++-+....|+.+.|...++++...- +.+...-
T Consensus 11 ~~l~~~~~~wr~~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~ 89 (289)
T KOG3060|consen 11 EELRDQMRKWREETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVG 89 (289)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHH
Confidence 3444444455555566666666666655432 2 333333 34455555666777777777777776642 2122222
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 038112 437 NTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSA 516 (625)
Q Consensus 437 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 516 (625)
..-...+-..|.+++|+++++.+++.+ +.|..++..-+...-..|+.-+|++.+....+. +..|...|..+...|...
T Consensus 90 ~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~ 167 (289)
T KOG3060|consen 90 KLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSE 167 (289)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhH
Confidence 222222445677777888877777754 445556655555566667766777777777665 455777777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---ChhHHHHHHHHHHHcCCCC
Q 038112 517 GKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTG---DCDKALEIWNHILEERLRP 571 (625)
Q Consensus 517 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p 571 (625)
|++++|.-++++++-. -|.++..+..++..+.-.| +..-|.++|.+.++ +.|
T Consensus 168 ~~f~kA~fClEE~ll~-~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk--l~~ 222 (289)
T KOG3060|consen 168 GDFEKAAFCLEELLLI-QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK--LNP 222 (289)
T ss_pred hHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--hCh
Confidence 8888887777777764 2445666667776665544 45567777777777 555
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.88 E-value=1e-07 Score=79.80 Aligned_cols=159 Identities=13% Similarity=0.054 Sum_probs=102.2
Q ss_pred CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch-----
Q 038112 35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI----- 109 (625)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----- 109 (625)
|.+..+ ..+...+...|+-+....+........ +.+..+....+...++.|++..|...|.++....|.+..+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence 444555 555555555666666655555544432 3344455556666666666666666666665554444444
Q ss_pred --hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChh
Q 038112 110 --LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYM 187 (625)
Q Consensus 110 --~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 187 (625)
|-+.|+++.|..-|.+.++-. +.++...+.+.-.+.-.|+.+.|..++......+ +-|..+-..+.......|+++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChH
Confidence 556666666666666666543 3456677777777888888888888888887763 336777777888888888888
Q ss_pred HHHHHHHHHH
Q 038112 188 RAKEIWERLV 197 (625)
Q Consensus 188 ~a~~~~~~~~ 197 (625)
+|..+...-.
T Consensus 220 ~A~~i~~~e~ 229 (257)
T COG5010 220 EAEDIAVQEL 229 (257)
T ss_pred HHHhhccccc
Confidence 8888766543
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.87 E-value=8.1e-07 Score=75.25 Aligned_cols=117 Identities=14% Similarity=0.176 Sum_probs=62.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HccCC--hhHH
Q 038112 481 SKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGL-FKTGD--CDKA 557 (625)
Q Consensus 481 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 557 (625)
.++.+++...++..++.+ +.+...|..++..|...|++++|...|++..+.. +.+...+..++.++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344445555555554442 3355555555555555666666666665555542 33455555555542 44444 3556
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 558 LEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 558 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
.++++++++ ..| +...+..++..+.+.|++++|+..++++++
T Consensus 130 ~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALA--LDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666555 444 334555555555555666666666666554
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.86 E-value=1.9e-06 Score=87.62 Aligned_cols=238 Identities=11% Similarity=0.074 Sum_probs=181.1
Q ss_pred CchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHH
Q 038112 169 NVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFI 248 (625)
Q Consensus 169 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 248 (625)
+...+..|+..+...+++++|.++.+...+.. +.....|..++..+.+.++.+.+.-+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 55678889999989999999999999777753 34444555555677777775555444 223
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHH
Q 038112 249 HGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDE 328 (625)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (625)
.......++.-...++..+... .-+...+..++.+|-+.|+.+++..+|+++.+.+|.++.+.+.++..|... +.++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 3333344444444444455543 224568888999999999999999999999999988999999999999999 9999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhC-CCCccHHHHHHHHHH
Q 038112 329 AISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKH-GCKLNAYTCNSLMNG 407 (625)
Q Consensus 329 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 407 (625)
|.+++.+.... +...+++..+.+++.++....+.+.+....+.+.+... +...-..++..+-..
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 99988877655 66677888999999999988888888888888887765 545566677778888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 038112 408 FIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLC 444 (625)
Q Consensus 408 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (625)
|...++++++..+++.+.+.... |......++.+|.
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 99999999999999999987544 5556666776665
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.82 E-value=5.5e-07 Score=76.26 Aligned_cols=151 Identities=11% Similarity=0.166 Sum_probs=114.1
Q ss_pred HHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHH
Q 038112 79 VIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVF 158 (625)
Q Consensus 79 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 158 (625)
-+..|...|+++......+.+.. + ...+...++.+++...+++.+..+ |.+...|..+...+...|++++|...|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~--~--~~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~ 96 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD--P--LHQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAY 96 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC--c--cccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34568888888887665543311 1 112334677788888888888876 678888999999999999999999999
Q ss_pred HHHHhCCCCCCchhhHHHHHHH-HhcCC--hhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112 159 DEMFERGVETNVVCYNILIDGF-FKKGD--YMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKN 235 (625)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (625)
++..+..+ .+...+..++.++ ...|+ .++|.+++++..+.+ +.+..++..+...+.+.|++++|+..++++.+.
T Consensus 97 ~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 97 RQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99888754 3777788888764 56676 488999999888874 556677888888888899999999999888876
Q ss_pred CC
Q 038112 236 ER 237 (625)
Q Consensus 236 ~~ 237 (625)
.+
T Consensus 174 ~~ 175 (198)
T PRK10370 174 NS 175 (198)
T ss_pred CC
Confidence 54
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.81 E-value=1.1e-06 Score=73.68 Aligned_cols=158 Identities=14% Similarity=0.096 Sum_probs=95.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 038112 174 NILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCK 253 (625)
Q Consensus 174 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 253 (625)
..+...+...|+-+....+....... .+.+....+.++....+.|++..|...+++..... ++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHH
Confidence 44555555566666665555554332 23333444456666666666666666666665444 3566666666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHH
Q 038112 254 AGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIW 333 (625)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 333 (625)
.|+++.|..-|.+..+..+. ++...+.+...+.-.|+++.|..++.......+.+..+-..+..+....|++++|..+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666666666665322 45556666666666666666666666666665556666666666666666666666554
Q ss_pred HH
Q 038112 334 EL 335 (625)
Q Consensus 334 ~~ 335 (625)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 43
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=1.5e-05 Score=66.55 Aligned_cols=187 Identities=14% Similarity=0.155 Sum_probs=143.1
Q ss_pred cCCHHHHHHHHHHHHh---CC-CCCChh-hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHH
Q 038112 411 ASKLENAIFLFKEMSR---KG-CSPTVV-SYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKID 485 (625)
Q Consensus 411 ~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 485 (625)
..+.++..+++.++.. .+ ..++.. .|..++-+....|+.+-|..+++.+... ++-+......-...+...|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 4567788888877764 23 334443 4556666777889999999999998876 4444444444445567789999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 038112 486 MALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHIL 565 (625)
Q Consensus 486 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (625)
+|.++++.+++.+ +.|..++-.-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999999876 446667766666677788888999888888887 77899999999999999999999999999999
Q ss_pred HcCCCC-CHHHHHHHHHHHhhcC---ChHHHHHHHHHHHHC
Q 038112 566 EERLRP-DIISYNITLKGLCSCS---RMSDAFEFLNDALCR 602 (625)
Q Consensus 566 ~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 602 (625)
- +.| ++..+..+...++-.| +.+-|.++|.+.++-
T Consensus 182 l--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 L--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred H--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 8 777 6677777887766554 566788999998863
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.79 E-value=5.1e-07 Score=72.17 Aligned_cols=91 Identities=14% Similarity=-0.024 Sum_probs=49.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhc
Q 038112 508 ILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGLCSC 586 (625)
Q Consensus 508 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 586 (625)
.++..+...|++++|...|+.+.... +.+...+..++.++...|++++|+..|+++++ +.| +...+..+..++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHc
Confidence 34455555555555555555555542 33455555555555555555555555555555 344 335555555555555
Q ss_pred CChHHHHHHHHHHHH
Q 038112 587 SRMSDAFEFLNDALC 601 (625)
Q Consensus 587 g~~~~A~~~~~~~~~ 601 (625)
|++++|++.++..++
T Consensus 106 g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 106 GEPGLAREAFQTAIK 120 (144)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555553
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=3.1e-06 Score=71.00 Aligned_cols=235 Identities=17% Similarity=0.124 Sum_probs=136.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHH
Q 038112 113 KRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEI 192 (625)
Q Consensus 113 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 192 (625)
.|+|..++..-+...... .++..-..+-++|...|.+...+. ++.... .|.......+.......++.+.-..-
T Consensus 21 ~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred hhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHHH
Confidence 355555544444333221 334444445556666666544332 222221 22333344444444444554444433
Q ss_pred HHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038112 193 WERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGI 272 (625)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 272 (625)
..+.........+......-+..|+..|++++|++...... +......-...+.+..+++-|.+.+++|.+..
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id- 167 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID- 167 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 33332222122222223333456778888888888776632 33344444556667778888888888887752
Q ss_pred CcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhH
Q 038112 273 FVDAVTYNAMIDGFCR----AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348 (625)
Q Consensus 273 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 348 (625)
+..+...|..++.+ .+++..|.-+|+++...-++++...+..+.++...|++++|..+++..+..... ++.++
T Consensus 168 --ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL 244 (299)
T KOG3081|consen 168 --EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETL 244 (299)
T ss_pred --hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHH
Confidence 55666666666654 356788888888888877788888888888888888888888888888877544 66666
Q ss_pred HHHHHHHHhcCCHHH
Q 038112 349 GVLINGLCKNGYLNK 363 (625)
Q Consensus 349 ~~l~~~~~~~~~~~~ 363 (625)
..++..-...|...+
T Consensus 245 ~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHHHHhCCChH
Confidence 666665555555433
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.75 E-value=4.6e-06 Score=84.22 Aligned_cols=216 Identities=12% Similarity=0.103 Sum_probs=142.3
Q ss_pred CHHHHHHHHHHHHccCCchHH-HHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHH--HCCCCCCHhHHHHHHHHHHhc
Q 038112 72 PEDVALSVIQAYGKNSMPDKA-LDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLW--EKGLKPDVYSYGTVINGLVKS 148 (625)
Q Consensus 72 ~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ 148 (625)
++.+...+=...+.-|..++| ++++.++.+. ..+.+....+...+-+++ -+..+.++..+..|.....+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~ 99 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQV-------LERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAA 99 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHHH-------HHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHc
Confidence 344444444555666666665 3344444332 112222222222222221 123456688888888888899
Q ss_pred CChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHH
Q 038112 149 GDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEM 228 (625)
Q Consensus 149 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 228 (625)
|++++|..+++...+.. |-+...+..++..+.+.+++++|...+++..... +.+......+..++.+.|++++|..+
T Consensus 100 g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~a~~l~~~g~~~~A~~~ 176 (694)
T PRK15179 100 HRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLEAKSWDEIGQSEQADAC 176 (694)
T ss_pred CCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHhcchHHHHHH
Confidence 99999999999988873 3356677788888889999999999998888763 55666777788888889999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038112 229 WDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRK 305 (625)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 305 (625)
|+++...++ -+..++..+...+...|+.++|...|+...+.. .+....++.++ +++..-..+++.+...
T Consensus 177 y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 245 (694)
T PRK15179 177 FERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALRRLGVE 245 (694)
T ss_pred HHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHHcCcc
Confidence 999887433 357788888888888999999999998887752 23334443332 2333344555555443
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=2.4e-05 Score=65.87 Aligned_cols=150 Identities=15% Similarity=0.123 Sum_probs=77.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc----c
Q 038112 406 NGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQ----S 481 (625)
Q Consensus 406 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 481 (625)
..|...+++++|.+...... +......=...+.+..+.+-|...+++|.+- .+..|++.|..++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 34555556666655554411 2222222233344555566666666666542 234455555554432 2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHH-HHH
Q 038112 482 KKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKA-LEI 560 (625)
Q Consensus 482 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~ 560 (625)
+.+..|.-+|+++.++ .+|+..+.+..+.++...|++++|..+++.+.... ..++.++..++.+-...|...++ .+.
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 3455666666666554 35566666666666666666666666666666552 33455555555555555544332 334
Q ss_pred HHHHHH
Q 038112 561 WNHILE 566 (625)
Q Consensus 561 ~~~~~~ 566 (625)
+.++..
T Consensus 265 l~QLk~ 270 (299)
T KOG3081|consen 265 LSQLKL 270 (299)
T ss_pred HHHHHh
Confidence 444444
No 132
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.68 E-value=0.00026 Score=64.59 Aligned_cols=156 Identities=17% Similarity=0.150 Sum_probs=91.5
Q ss_pred HHHHccCChhHHHHHHHhhccCCCCCCCHHHHH------HHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 038112 10 NLLKAEKNPHTALALFDSATREPGYAHSPHLFH------HILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAY 83 (625)
Q Consensus 10 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (625)
=+|.+|+++.+|..+|.++.+.. ..++..+. .+++++. ..+.+.....+....+..+. .+.+-...+-..
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~-s~~l~LF~~L~~ 89 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGK-SAYLPLFKALVA 89 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 35678899999999998877654 33333332 3445554 45677777777777766532 332222222334
Q ss_pred HccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112 84 GKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFE 163 (625)
Q Consensus 84 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 163 (625)
.+.+.+..|.+.+......-......+... -+.+. -+|-..=+..+.++...|++.+++.++++++.
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~--------ni~~l-----~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDT--------NIQQL-----FSDFFLDEIEAHSLIETGRFSEGRAILNRIIE 156 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhh--------hHHHH-----hhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 578888888888775532111100000000 01111 12334445567778899999999999998876
Q ss_pred CCC----CCCchhhHHHHHHHHh
Q 038112 164 RGV----ETNVVCYNILIDGFFK 182 (625)
Q Consensus 164 ~~~----~~~~~~~~~l~~~~~~ 182 (625)
.=. .-++.+|+.++-.+.+
T Consensus 157 ~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 157 RLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHhhhhhcccHHHHHHHHHHHhH
Confidence 533 3678888887666644
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.67 E-value=1.5e-05 Score=80.63 Aligned_cols=131 Identities=14% Similarity=0.161 Sum_probs=74.3
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038112 432 TVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPD-MITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILI 510 (625)
Q Consensus 432 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 510 (625)
+...+..|.....+.|.+++|..+++.+.+. .|+ ......++..+.+.+++++|+..+++..... +.+......++
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 4555555555566666666666666666553 333 3344455555566666666666666665543 22445555555
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 511 HGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 511 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
.++...|++++|..+|+++... .+.+..++..++.++...|+.++|...|+++++
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5666666666666666666653 223355555666666666666666666666655
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.65 E-value=1.8e-06 Score=69.06 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038112 503 VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLK 581 (625)
Q Consensus 503 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 581 (625)
......++..+...|++++|...++.+...+ +.+...+..++.++...|++++|..+++++++ ..| +...+..+..
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~ 93 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA--LDPDDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCChHHHHHHHH
Confidence 3444555566666666666666666666542 33556666666666666666666666666665 334 3455555666
Q ss_pred HHhhcCChHHHHHHHHHHHH
Q 038112 582 GLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 582 ~~~~~g~~~~A~~~~~~~~~ 601 (625)
+|...|++++|.+++++.++
T Consensus 94 ~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666664
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=8.5e-05 Score=68.52 Aligned_cols=147 Identities=14% Similarity=0.154 Sum_probs=92.5
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 038112 172 CYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGL 251 (625)
Q Consensus 172 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 251 (625)
.+.-....+...|++++|+..++.+... .|.|...+......+.+.++.++|.+.++++....+. .......+..++
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~al 384 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHH
Confidence 3333444455667777777777776665 3445555556667777777777777777777665332 244555666777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHH
Q 038112 252 CKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAIS 331 (625)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 331 (625)
.+.|++.+|+.+++...... +.++..|..|.++|...|+..++..-. ...+...|++++|+.
T Consensus 385 l~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~ 446 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAII 446 (484)
T ss_pred HhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHH
Confidence 77777777777777766653 336677777777777777655554433 334556677777776
Q ss_pred HHHHHHHc
Q 038112 332 IWELLREK 339 (625)
Q Consensus 332 ~~~~~~~~ 339 (625)
.+....+.
T Consensus 447 ~l~~A~~~ 454 (484)
T COG4783 447 FLMRASQQ 454 (484)
T ss_pred HHHHHHHh
Confidence 66666655
No 136
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3.1e-05 Score=69.44 Aligned_cols=274 Identities=11% Similarity=0.030 Sum_probs=168.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 038112 284 DGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNK 363 (625)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 363 (625)
..+.+..++.+|+..+....+..|.+...|..-+..+...++++++.--.+.-.+.... .+.......+.+...++..+
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHH
Confidence 34556666777777777777777777777777777777777777776655554443211 22233334444555555555
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHhhCCC-CccHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 038112 364 AIQILNEVEEGGEGRLADAASLVNRMDKHGC-KLNAYTCNSL-MNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLIN 441 (625)
Q Consensus 364 a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 441 (625)
|.+.++.- .......+...++.+..... +|....+..+ ..++.-.++++.|.+.--.+.+.+.. + .+...++
T Consensus 136 A~~~~~~~---~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n--~~al~vr 209 (486)
T KOG0550|consen 136 AEEKLKSK---QAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-N--AEALYVR 209 (486)
T ss_pred HHHHhhhh---hhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-h--hHHHHhc
Confidence 55555411 11122223333333333322 2333444433 24566778889888888777765321 2 2233332
Q ss_pred --HHhccCCHHHHHHHHHHHHHCCCCCCHhhHH-------------HHHHHHhccCCHHHHHHHHHHHHhC---CCCCCH
Q 038112 442 --GLCKVERFGEAYSFVKEMLEKGWKPDMITYS-------------LLINGLCQSKKIDMALKLCCQFLQK---GFTPDV 503 (625)
Q Consensus 442 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~ 503 (625)
++.-.++.+.+...|++.+.. .|+..... .-..-..+.|++..|.+++.+.+.. +..|+.
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na 287 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA 287 (486)
T ss_pred ccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence 234567888888888888874 44443221 2223346788899999999988873 344566
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 038112 504 TMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN-LVTYNTLMDGLFKTGDCDKALEIWNHILEER 568 (625)
Q Consensus 504 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 568 (625)
..|.....+..+.|+.++|+.--+...+. .+. ...+..-+.++...+++++|.+-|+++.+..
T Consensus 288 klY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 288 KLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77777778888899999999888888774 332 3445556677788889999999999988843
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.59 E-value=2.7e-06 Score=67.98 Aligned_cols=117 Identities=18% Similarity=0.171 Sum_probs=92.3
Q ss_pred HHHHHHHCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 038112 455 FVKEMLEKGWKP-DMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRN 533 (625)
Q Consensus 455 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 533 (625)
.+++++.. .| +......+...+...|++++|...++.+...+ +.+...+..++.++...|++++|..++++..+.+
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555543 33 34556677778888999999999999988764 4477888889999999999999999999988863
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHH
Q 038112 534 CVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYN 577 (625)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 577 (625)
+.+...+..++.++...|++++|...|+++++ +.|+...+.
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~ 122 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPEYS 122 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccchHH
Confidence 55688888899999999999999999999998 667655443
No 138
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=3.9e-05 Score=68.83 Aligned_cols=90 Identities=18% Similarity=0.090 Sum_probs=66.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCC---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHH
Q 038112 251 LCKAGNVEGAERVYREMVESG---IFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVD 327 (625)
Q Consensus 251 ~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 327 (625)
..+.|++..|.+.|.+.+... ..++...|.....+..+.|+.++|+.--......++....++..-..++...++|+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888777652 34556667777777778888888888888877776666777777777777888888
Q ss_pred HHHHHHHHHHHcC
Q 038112 328 EAISIWELLREKN 340 (625)
Q Consensus 328 ~a~~~~~~~~~~~ 340 (625)
+|.+-+++..+..
T Consensus 339 ~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 339 EAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHhhc
Confidence 8888888777663
No 139
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.54 E-value=1e-06 Score=68.71 Aligned_cols=92 Identities=14% Similarity=-0.039 Sum_probs=83.1
Q ss_pred HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112 7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN 86 (625)
Q Consensus 7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (625)
.++-.+..+|++++|.++|+.+...+ |.+..-|..|+-++-..|++++|+..|..+...++ .++..+..++.++...
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 35566778999999999999999988 99999999999999999999999999999999984 5888999999999999
Q ss_pred CCchHHHHHHHHhHH
Q 038112 87 SMPDKALDVFQRMNE 101 (625)
Q Consensus 87 ~~~~~A~~~~~~~~~ 101 (625)
|+.+.|+..|+.+..
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998865
No 140
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=5.9e-05 Score=69.54 Aligned_cols=147 Identities=20% Similarity=0.125 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038112 278 TYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCK 357 (625)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 357 (625)
........+...|++++|+..++.+....|.|+..+......+.+.++..+|.+.++++....+. .......+..++.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~ 386 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHh
Confidence 33344444555566666666666666666666666666666666666666666666666655222 13344445556666
Q ss_pred cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 038112 358 NGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYN 437 (625)
Q Consensus 358 ~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 437 (625)
.|++.+|+.+++.. .. ..+.++..|..|..+|...|+..++.....+
T Consensus 387 ~g~~~eai~~L~~~------------------~~-~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE-------------- 433 (484)
T COG4783 387 GGKPQEAIRILNRY------------------LF-NDPEDPNGWDLLAQAYAELGNRAEALLARAE-------------- 433 (484)
T ss_pred cCChHHHHHHHHHH------------------hh-cCCCCchHHHHHHHHHHHhCchHHHHHHHHH--------------
Confidence 66666666665531 11 1233555666666666666665555443332
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHC
Q 038112 438 TLINGLCKVERFGEAYSFVKEMLEK 462 (625)
Q Consensus 438 ~l~~~~~~~~~~~~a~~~~~~~~~~ 462 (625)
.+...|+++.|...+....+.
T Consensus 434 ----~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 434 ----GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred ----HHHhCCCHHHHHHHHHHHHHh
Confidence 233355666666655555544
No 141
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.52 E-value=1.2e-05 Score=70.50 Aligned_cols=59 Identities=8% Similarity=0.152 Sum_probs=46.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhC--CCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHh
Q 038112 140 TVINGLVKSGDLLGALAVFDEMFER--GVETNVVCYNILIDGFFKKGDYMRAKEIWERLVM 198 (625)
Q Consensus 140 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 198 (625)
.+...|.+.|.+..|..-++.+++. +.+........+..+|...|..++|.++...+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 3446688899999999999999986 3334456677888999999999999988776543
No 142
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.50 E-value=0.00025 Score=63.35 Aligned_cols=280 Identities=11% Similarity=0.034 Sum_probs=183.3
Q ss_pred ccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHH
Q 038112 14 AEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKAL 93 (625)
Q Consensus 14 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 93 (625)
--||-..|.+.-.++.+.-..-+.+.+...-+++-.-.|+++.|.+-|+.|+.- |+.-.-.+..|.-.--+.|+.+.|+
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHH
Confidence 458888888888876654412233333333445666789999999999999963 1111112222323335789999999
Q ss_pred HHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCC-CCCCHhH--HHHHHHHH---HhcCChhhHHHHHHH
Q 038112 94 DVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKG-LKPDVYS--YGTVINGL---VKSGDLLGALAVFDE 160 (625)
Q Consensus 94 ~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~-~~~~~~~--~~~l~~~~---~~~~~~~~a~~~~~~ 160 (625)
.+-+.....-|..+.+ .+..|+++.|+++++.-.... +.+++.- -..|+.+- .-..+...|...-.+
T Consensus 175 ~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~ 254 (531)
T COG3898 175 HYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE 254 (531)
T ss_pred HHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 9999988888887777 788999999999999866542 2233322 11222211 123456677776666
Q ss_pred HHhCCCCCCch-hhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhC-CC-
Q 038112 161 MFERGVETNVV-CYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKN-ER- 237 (625)
Q Consensus 161 ~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~- 237 (625)
..+. .||.. .-....+.+.+.|+..++-.+++.+-+.. |....+.. ..+.+.|+ .++.-+++..+. ..
T Consensus 255 a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e---PHP~ia~l--Y~~ar~gd--ta~dRlkRa~~L~slk 325 (531)
T COG3898 255 ANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE---PHPDIALL--YVRARSGD--TALDRLKRAKKLESLK 325 (531)
T ss_pred Hhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC---CChHHHHH--HHHhcCCC--cHHHHHHHHHHHHhcC
Confidence 6655 44433 23345678899999999999999988754 44433332 23444554 344444333221 11
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhc
Q 038112 238 EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA-GKIKECFELWEVMGRK 305 (625)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 305 (625)
+.+..+...+.++....|++..|..--+..... .|....|..|...-... |+-.++..++.+..+.
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 346667778888999999999988877777654 67788888888776554 9999999999888765
No 143
>PF12854 PPR_1: PPR repeat
Probab=98.45 E-value=3.2e-07 Score=51.43 Aligned_cols=32 Identities=31% Similarity=0.840 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 038112 568 RLRPDIISYNITLKGLCSCSRMSDAFEFLNDA 599 (625)
Q Consensus 568 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 599 (625)
|+.||..+|+.++.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56667777777777777777777777776665
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.40 E-value=5.3e-06 Score=64.62 Aligned_cols=102 Identities=9% Similarity=0.012 Sum_probs=80.5
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCC-CCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREP-GYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYC--PEDVALSVIQA 82 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 82 (625)
-.++..+..+|++++|+..|+.++... +.+..+.++..++.++.+.|++++|.+.|+.++...|.. ...++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 356778888999999999999887654 223335677888999999999999999999999876432 25678888888
Q ss_pred HHccCCchHHHHHHHHhHHhhCCCc
Q 038112 83 YGKNSMPDKALDVFQRMNEIFGCEA 107 (625)
Q Consensus 83 ~~~~~~~~~A~~~~~~~~~~~~~~~ 107 (625)
+.+.|++++|...++++...+|..+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCCh
Confidence 9999999999999998877666544
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.37 E-value=3.2e-05 Score=62.28 Aligned_cols=116 Identities=13% Similarity=0.039 Sum_probs=64.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChh
Q 038112 481 SKKIDMALKLCCQFLQKGFTPD---VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN--LVTYNTLMDGLFKTGDCD 555 (625)
Q Consensus 481 ~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 555 (625)
.++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......|+ ......|+.++...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 556666666666666542 112 22333445566666777777777776666531121 223445666666677777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 038112 556 KALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDA 599 (625)
Q Consensus 556 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 599 (625)
+|+..++.... -...+..+...+++|.+.|++++|+..|++.
T Consensus 103 ~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77766655322 1123344555566666777777777666653
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.36 E-value=1.9e-05 Score=73.51 Aligned_cols=121 Identities=18% Similarity=0.206 Sum_probs=68.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 038112 473 LLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTG 552 (625)
Q Consensus 473 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 552 (625)
.++..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++++..+. .+.+...+...+..+...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 33444445555666666666665542 33 2233555555555666666666666554 2334555555556666666
Q ss_pred ChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 038112 553 DCDKALEIWNHILEERLRPD-IISYNITLKGLCSCSRMSDAFEFLNDAL 600 (625)
Q Consensus 553 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (625)
+++.|+.+.+++.+ ..|+ ..+|..|+.+|.+.|++++|+-.++.+.
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66666666666666 4553 3566666666666666666666666553
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.35 E-value=1.8e-05 Score=73.74 Aligned_cols=123 Identities=12% Similarity=0.131 Sum_probs=101.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 038112 210 NVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289 (625)
Q Consensus 210 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (625)
..++..+...++++.|+.+|+++.+.. +.....+++.+...++..+|.+++++.++..+ .+...+......+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~----pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD----PEVAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC----CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 345566777889999999999998653 33555678888888888999999999887643 3677777778888899
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 038112 290 GKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLR 337 (625)
Q Consensus 290 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 337 (625)
++++.|+++.+++....|.+..+|..|+.+|...|+++.|+-.++.+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999988899999999999999999999998887654
No 148
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.35 E-value=4.7e-06 Score=78.10 Aligned_cols=100 Identities=9% Similarity=-0.066 Sum_probs=89.7
Q ss_pred HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112 7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN 86 (625)
Q Consensus 7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (625)
.-++-+...|++++|+..|+.+++.. |.++.++..++.++...|++++|+..++.++..++ .+...+..++.+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHh
Confidence 45677889999999999999999988 89999999999999999999999999999999974 5788999999999999
Q ss_pred CCchHHHHHHHHhHHhhCCCcch
Q 038112 87 SMPDKALDVFQRMNEIFGCEAGI 109 (625)
Q Consensus 87 ~~~~~A~~~~~~~~~~~~~~~~~ 109 (625)
|++++|+..|+++....|..+.+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRF 106 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999997766665554
No 149
>PF12854 PPR_1: PPR repeat
Probab=98.35 E-value=8.1e-07 Score=49.80 Aligned_cols=30 Identities=47% Similarity=0.987 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 038112 499 FTPDVTMYNILIHGLCSAGKVEDALQLYSN 528 (625)
Q Consensus 499 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 528 (625)
+.||..+|+.|+.+|++.|++++|.++|++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 334444444444444444444444444443
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.34 E-value=3.6e-05 Score=61.95 Aligned_cols=125 Identities=15% Similarity=0.144 Sum_probs=82.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHH
Q 038112 436 YNTLINGLCKVERFGEAYSFVKEMLEKGWKPD---MITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPD--VTMYNILI 510 (625)
Q Consensus 436 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 510 (625)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......|+ ......+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33333333 3677777777777777652 222 22334455667778888888888888887642222 22445567
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 038112 511 HGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHI 564 (625)
Q Consensus 511 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (625)
.++...|++++|+..++..... ...+..+...+.++.+.|++++|+..|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7788888888888888664432 334556777888888888888888888765
No 151
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.31 E-value=2.4e-05 Score=61.26 Aligned_cols=94 Identities=9% Similarity=0.041 Sum_probs=53.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 038112 505 MYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGL 583 (625)
Q Consensus 505 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 583 (625)
....+...+...|++++|.++|+-+...+ +-+..-|..|+.++...|++++|+..|..+.. +.| |+..+..+..++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHH
Confidence 33344444555666666666666665532 22455555666666666666666666666665 444 445566666666
Q ss_pred hhcCChHHHHHHHHHHHH
Q 038112 584 CSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~ 601 (625)
...|+.+.|.+-|+..+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666665553
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.27 E-value=7.4e-07 Score=63.78 Aligned_cols=83 Identities=7% Similarity=0.052 Sum_probs=65.6
Q ss_pred cCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHH
Q 038112 15 EKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALD 94 (625)
Q Consensus 15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 94 (625)
+|+++.|+.+|+.+....+..++...+..++.++.+.|++++|..+++. .+.++ .+......++.++.+.|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 7899999999999988772212566677789999999999999999998 55543 345666677999999999999999
Q ss_pred HHHHh
Q 038112 95 VFQRM 99 (625)
Q Consensus 95 ~~~~~ 99 (625)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99863
No 153
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=1.5e-05 Score=68.59 Aligned_cols=102 Identities=24% Similarity=0.291 Sum_probs=82.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCC
Q 038112 475 INGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN-LVTYNTLMDGLFKTGD 553 (625)
Q Consensus 475 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 553 (625)
..-..+.+++.+|+..|.++++.. +-|+..|..-..+|.+.|.++.|++-.+..+.. .|+ ..+|..|+.+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCc
Confidence 345678889999999999998864 446777888888999999999999988888884 444 7788999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038112 554 CDKALEIWNHILEERLRPDIISYNITLK 581 (625)
Q Consensus 554 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 581 (625)
+++|++.|+++++ +.|+..+|..=+.
T Consensus 165 ~~~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 165 YEEAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 9999999999998 8888776654443
No 154
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.24 E-value=0.0038 Score=57.23 Aligned_cols=144 Identities=12% Similarity=0.184 Sum_probs=109.3
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038112 470 TYSLLINGLCQSKKIDMALKLCCQFLQKG-FTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGL 548 (625)
Q Consensus 470 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (625)
.|...+.+..+....+.|..+|-++.+.+ +.+++.+++.++..+ ..|++..|..+|+.-... ++.+....+..+..+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK-FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh-CCCchHHHHHHHHHH
Confidence 34556666667778899999999999987 567888889998866 468899999999988876 455555556777788
Q ss_pred HccCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038112 549 FKTGDCDKALEIWNHILEERLRPD--IISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAV 618 (625)
Q Consensus 549 ~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 618 (625)
...++-+.|..+|+..+++ +..+ ..+|..++.--..-|+...+..+=++|.+ .-|...+.....+-|
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 8999999999999987764 3333 46888888887888999999888888875 335554444444444
No 155
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.23 E-value=0.0041 Score=57.17 Aligned_cols=455 Identities=15% Similarity=0.179 Sum_probs=227.3
Q ss_pred hhhcCChHHHHHHHHHHHHCCCCCC------HhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHH--HH
Q 038112 110 LCRKRQFEKAKRFLNSLWEKGLKPD------VYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDG--FF 181 (625)
Q Consensus 110 ~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 181 (625)
+.+++++.+|.++|.++.+.. ..+ ...-+.+++++.. ++.+.....+....+. .| ...|..+..+ +.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 334555556666555555432 111 2233455566553 3445444444444444 12 2334444433 45
Q ss_pred hcCChhHHHHHHHHHHhC--CCCCC-----------CcchHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCCChhhH
Q 038112 182 KKGDYMRAKEIWERLVME--TSVYP-----------NVVTYNVMINGLCKCGRFDECLEMWDRMKKN----EREKDSFTY 244 (625)
Q Consensus 182 ~~g~~~~a~~~~~~~~~~--~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~ 244 (625)
+.+.+.+|.+.+...... +..+| +...=+..+.++...|.+.++..+++++... ...-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 788899998887766554 10111 1111234567778888999888888877653 233677777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 038112 245 CSFIHGLCKAGNVEGAERVYREMVES---GIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLL 321 (625)
Q Consensus 245 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (625)
+.++-.+.+ ..|-++.+. .+-| . |..++..|.+.=..-++.. +++ -.|.......++....
T Consensus 171 d~~vlmlsr--------SYfLEl~e~~s~dl~p--d-yYemilfY~kki~~~d~~~-Y~k----~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 171 DRAVLMLSR--------SYFLELKESMSSDLYP--D-YYEMILFYLKKIHAFDQRP-YEK----FIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHHHHhH--------HHHHHHHHhcccccCh--H-HHHHHHHHHHHHHHHhhch-HHh----hCcHHHHHHHHHHHHH
Confidence 775554433 233333322 2222 2 2333333333211000000 000 0011111111111111
Q ss_pred hC--CCHHHHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccH
Q 038112 322 EN--GKVDEAISIWELLREKNCNADSTTH-GVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNA 398 (625)
Q Consensus 322 ~~--~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 398 (625)
-. .+..--.++++.-...-+.|+.... ..+...... +.+.+..+.+.+.... .+.+.+ .-.
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~----------i~~Lke----~li 298 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSK----------IEKLKE----ELI 298 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHh----------HHHHHH----HHH
Confidence 10 0111112222222222233433322 222333322 4444444444322110 001111 123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-------HHHHHHhc----cCCHHHHHHHHHHHHHCCCCCC
Q 038112 399 YTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYN-------TLINGLCK----VERFGEAYSFVKEMLEKGWKPD 467 (625)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 467 (625)
.++..++....+.++...|.+.+.-+.... |+...-. .+-+..+. .-+...-+.++......++ |
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--D 374 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--D 374 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--c
Confidence 467778888888899999988888777653 3322111 11122221 1123334455555554332 3
Q ss_pred Hhh----HHHHHHHHhccCC-HHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHc---CCCHHHHHHHHHHHHhCCCC
Q 038112 468 MIT----YSLLINGLCQSKK-IDMALKLCCQFLQKGFTPDVTMYNILI----HGLCS---AGKVEDALQLYSNMKKRNCV 535 (625)
Q Consensus 468 ~~~----~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~ 535 (625)
..- +.....-+.+.|. -++|+.+++.+++-. +-|...-+.+. ..|.. ...+..-+.+-+-+.+.|++
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 221 1222333455555 788999999988742 23443333322 23322 22344444444445556776
Q ss_pred C----CHHHHHHHHHH--HHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHH
Q 038112 536 P----NLVTYNTLMDG--LFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTI 609 (625)
Q Consensus 536 ~----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (625)
| +...-|.|..+ +..+|++.++.-+-.-+.+ +.|++.+|.-++-++....++++|..++.++ +|+..
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~ 526 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNER 526 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchh
Confidence 6 34456666655 5578999999887777777 8999999999999999999999999999885 46666
Q ss_pred HHHH
Q 038112 610 TWHI 613 (625)
Q Consensus 610 ~~~~ 613 (625)
.+++
T Consensus 527 ~~ds 530 (549)
T PF07079_consen 527 MRDS 530 (549)
T ss_pred hHHH
Confidence 6653
No 156
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.23 E-value=0.0021 Score=62.14 Aligned_cols=211 Identities=14% Similarity=0.091 Sum_probs=105.2
Q ss_pred CCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHH--HHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 038112 71 CPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKA--KRFLNSLWEKGLKPDVYSYGTVINGLVKS 148 (625)
Q Consensus 71 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (625)
|.+..|..++......-.++.|...|-+. |+|... .+-+..+.+.. .-.+=+.+ --
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc--------------~dY~Gik~vkrl~~i~s~~------~q~aei~~--~~ 747 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRC--------------GDYAGIKLVKRLRTIHSKE------QQRAEISA--FY 747 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhh--------------ccccchhHHHHhhhhhhHH------HHhHhHhh--hh
Confidence 56788888887766666677776666544 333211 11111111111 00111111 23
Q ss_pred CChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHH
Q 038112 149 GDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEM 228 (625)
Q Consensus 149 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 228 (625)
|++++|.++|-+|-+++ ..+..+.+.|++-+..++++.--.......-..+|+.+...+.....|++|.+.
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777666665442 234455566666666655543211110111123566677777777777777766
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038112 229 WDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL 308 (625)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 308 (625)
+..-. + ....+.++.+..++++...+.+.+ +.+....-.+..++.+.|.-++|.+.+-+... +
T Consensus 819 Y~~~~------~---~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~---p 881 (1189)
T KOG2041|consen 819 YSYCG------D---TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL---P 881 (1189)
T ss_pred HHhcc------c---hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC---c
Confidence 65432 1 112345555555555544444333 22444555566666666666666655533221 1
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHH
Q 038112 309 NVVSYNILIRGLLENGKVDEAISIWE 334 (625)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~a~~~~~ 334 (625)
..-+..|...+++.+|.++-+
T Consensus 882 -----kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 882 -----KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHH
Confidence 122344555556666665543
No 157
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.21 E-value=4.8e-06 Score=56.14 Aligned_cols=60 Identities=17% Similarity=0.102 Sum_probs=46.7
Q ss_pred HHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcC
Q 038112 8 LLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKC 69 (625)
Q Consensus 8 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 69 (625)
++..+..+|++++|+..|+.+++.. |.++.++..++.++...|++++|...|+.+++..|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 5677778888888888888877777 77888888888888888888888888888877753
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.21 E-value=9.4e-06 Score=60.44 Aligned_cols=95 Identities=14% Similarity=0.041 Sum_probs=82.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 038112 5 AKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYG 84 (625)
Q Consensus 5 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (625)
...++.++..+|++++|+..|+.+++.. |.++..+..++.++...+++++|.+.++.+++..+ .+...+..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHH
Confidence 3467888899999999999999998876 77778889999999999999999999999999864 35578888999999
Q ss_pred ccCCchHHHHHHHHhHHh
Q 038112 85 KNSMPDKALDVFQRMNEI 102 (625)
Q Consensus 85 ~~~~~~~A~~~~~~~~~~ 102 (625)
..|+++.|...+......
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999887543
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.19 E-value=0.00018 Score=65.49 Aligned_cols=121 Identities=17% Similarity=0.246 Sum_probs=54.9
Q ss_pred ChhhHHHHHHHHHhC----CCC-CCchhhHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCCC----cchHHHHHHHHHhc
Q 038112 150 DLLGALAVFDEMFER----GVE-TNVVCYNILIDGFFKK-GDYMRAKEIWERLVMETSVYPN----VVTYNVMINGLCKC 219 (625)
Q Consensus 150 ~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 219 (625)
++++|+..++++.+. |-+ .-...+..++..|... |+++.|++.|++..+....... ..++..++..+.+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 566666665555432 100 0112344455556565 6777777766665442100001 12344555566666
Q ss_pred CChhhHHHHHHHHHhCCCCCC-----hh-hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038112 220 GRFDECLEMWDRMKKNEREKD-----SF-TYCSFIHGLCKAGNVEGAERVYREMVES 270 (625)
Q Consensus 220 g~~~~a~~~~~~~~~~~~~~~-----~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 270 (625)
|++++|.++|+++.......+ .. .+...+-++...||+..|...+++....
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666666666666554322111 11 1222333444556666666666655543
No 160
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=5.1e-05 Score=65.44 Aligned_cols=131 Identities=20% Similarity=0.137 Sum_probs=97.0
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH
Q 038112 440 INGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKV 519 (625)
Q Consensus 440 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 519 (625)
..-+.+.+++++|+..|.++++. .+.|.+-|..-..+|.+.|.++.|.+-.+..+..+ +....+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence 34456788999999999999986 24466778888899999999999999999998853 22467999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHccCChh---HHHHHHHHHHHcCCCCCHH
Q 038112 520 EDALQLYSNMKKRNCVPNLVTY-NTLMDGLFKTGDCD---KALEIWNHILEERLRPDII 574 (625)
Q Consensus 520 ~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~ 574 (625)
++|++.|++.+. +.|+-.+| ..|-.+-.+.+... .+..-++.....|..|+..
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~ 222 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSR 222 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccch
Confidence 999999999998 56664444 45555555555444 4444454444455555543
No 161
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.17 E-value=5.1e-05 Score=65.02 Aligned_cols=173 Identities=15% Similarity=0.084 Sum_probs=113.4
Q ss_pred HHHHHHccCChhHHHHHHHhhccC-CCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCH--HHHHHHHHHHH
Q 038112 8 LLNLLKAEKNPHTALALFDSATRE-PGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPE--DVALSVIQAYG 84 (625)
Q Consensus 8 l~~~l~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~ 84 (625)
.+..+..+|++.+|+..|+.+... ++.+..+.+...++.++.+.|++..|...+++.++..|..+. .++..++.++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 356677899999999999998854 455677788888999999999999999999999998765333 24444444433
Q ss_pred cc-----------CCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhh
Q 038112 85 KN-----------SMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLG 153 (625)
Q Consensus 85 ~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 153 (625)
.. +...+|...|+.+...+|..+-+ .+|...+..+...- ...-..+...|.+.|.+..
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~-------~~A~~~l~~l~~~l----a~~e~~ia~~Y~~~~~y~a 159 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA-------EEAKKRLAELRNRL----AEHELYIARFYYKRGKYKA 159 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH-------HHHHHHHHHHHHHH----HHHHHHHHHHHHCTT-HHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH-------HHHHHHHHHHHHHH----HHHHHHHHHHHHHcccHHH
Confidence 22 23457788888888888876654 33433333332210 1112335677889999999
Q ss_pred HHHHHHHHHhCC--CCCCchhhHHHHHHHHhcCChhHHHH
Q 038112 154 ALAVFDEMFERG--VETNVVCYNILIDGFFKKGDYMRAKE 191 (625)
Q Consensus 154 a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~ 191 (625)
|..-++.+++.= .+........++.++.+.|..+.+..
T Consensus 160 A~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 160 AIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 999999998871 11122456778888999998885543
No 162
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.16 E-value=9.2e-05 Score=57.55 Aligned_cols=95 Identities=16% Similarity=0.097 Sum_probs=57.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC----HHHHH
Q 038112 505 MYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN---LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD----IISYN 577 (625)
Q Consensus 505 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~ 577 (625)
++..++..+...|++++|.+.|..+.... +.+ ...+..++.++...|++++|...|+.+.. ..|+ ...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~ 80 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK--KYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HCCCCCcccHHHH
Confidence 44455566666677777777776666542 111 34455566667777777777777776665 2332 34455
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHC
Q 038112 578 ITLKGLCSCSRMSDAFEFLNDALCR 602 (625)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (625)
.+..++.+.|++++|.+.++++++.
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHH
Confidence 6666666677777777777776653
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.15 E-value=5.5e-05 Score=63.08 Aligned_cols=87 Identities=7% Similarity=-0.117 Sum_probs=39.9
Q ss_pred HHHHHHccCChhHHHHHHHhhccCCCCCC-CHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112 8 LLNLLKAEKNPHTALALFDSATREPGYAH-SPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN 86 (625)
Q Consensus 8 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (625)
++..+...|++++|+..|+.+++....++ ....+..++.++.+.|++++|...+.+++...+ .+...+..++.++...
T Consensus 41 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~ 119 (172)
T PRK02603 41 DGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAVIYHKR 119 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHc
Confidence 34444445555555555555443321111 134444455555555555555555555555432 2344444444455444
Q ss_pred CCchHHHHH
Q 038112 87 SMPDKALDV 95 (625)
Q Consensus 87 ~~~~~A~~~ 95 (625)
|+...+..-
T Consensus 120 g~~~~a~~~ 128 (172)
T PRK02603 120 GEKAEEAGD 128 (172)
T ss_pred CChHhHhhC
Confidence 444444433
No 164
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.14 E-value=0.00041 Score=55.15 Aligned_cols=156 Identities=13% Similarity=0.001 Sum_probs=95.7
Q ss_pred HHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCC
Q 038112 9 LNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSM 88 (625)
Q Consensus 9 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (625)
...+.+.-|++.+++-....... .++...-..++.++.+.|++.+|...|++.+..-+-.+..+...++++.+..++
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~---ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~ 139 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAI---APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE 139 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhh---chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc
Confidence 34444444555444333332221 455666677889999999999999999999987677788889999999999999
Q ss_pred chHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 038112 89 PDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVET 168 (625)
Q Consensus 89 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 168 (625)
+..|...++++-+-.|... .|| ....+.+.+...|.+..|...|+...+. -|
T Consensus 140 ~A~a~~tLe~l~e~~pa~r------------------------~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~--yp 191 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAFR------------------------SPD--GHLLFARTLAAQGKYADAESAFEVAISY--YP 191 (251)
T ss_pred HHHHHHHHHHHhhcCCccC------------------------CCC--chHHHHHHHHhcCCchhHHHHHHHHHHh--CC
Confidence 9999999888754322111 122 2233444555555555555555555554 23
Q ss_pred CchhhHHHHHHHHhcCChhHHHHHHHH
Q 038112 169 NVVCYNILIDGFFKKGDYMRAKEIWER 195 (625)
Q Consensus 169 ~~~~~~~l~~~~~~~g~~~~a~~~~~~ 195 (625)
+...-......+.++|+.+++..-+..
T Consensus 192 g~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 192 GPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 333333344445555555554443333
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.13 E-value=8.7e-05 Score=69.71 Aligned_cols=104 Identities=11% Similarity=0.054 Sum_probs=81.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 038112 473 LLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTG 552 (625)
Q Consensus 473 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 552 (625)
.....+...|+++.|+..|+++++.. +.+...|..++.+|...|++++|+..+++++... +.+...|..++.+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 34556677889999999999888864 4467788888888888999999999999888863 446778888888899999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038112 553 DCDKALEIWNHILEERLRPDIISYNITL 580 (625)
Q Consensus 553 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 580 (625)
++++|+..|+++++ +.|+......++
T Consensus 85 ~~~eA~~~~~~al~--l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGAS--LAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 99999999999888 677654444443
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.12 E-value=0.00098 Score=60.69 Aligned_cols=124 Identities=12% Similarity=0.095 Sum_probs=78.0
Q ss_pred HHHHHHhcc-CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC-----CCH-H
Q 038112 473 LLINGLCQS-KKIDMALKLCCQFLQK----GFTPD--VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCV-----PNL-V 539 (625)
Q Consensus 473 ~l~~~~~~~-~~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~-~ 539 (625)
.+...|... |++++|.+.|++..+. + .+. ...+..++..+.+.|++++|.++|+++...... .+. .
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 344556666 7888888888877652 2 111 345667788888999999999999988765222 122 2
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCC----C--HHHHHHHHHHHhhc--CChHHHHHHHHHH
Q 038112 540 TYNTLMDGLFKTGDCDKALEIWNHILEERLRP----D--IISYNITLKGLCSC--SRMSDAFEFLNDA 599 (625)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~--~~~~~~l~~~~~~~--g~~~~A~~~~~~~ 599 (625)
.+...+-++...||+..|.+.+++... ..| + ......++.+|-.. ..+++++.-|+.+
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~--~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCS--QDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGT--TSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 334455677888999999999999887 333 2 24556666666542 4466666666665
No 167
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.12 E-value=0.0011 Score=52.84 Aligned_cols=128 Identities=16% Similarity=0.082 Sum_probs=66.1
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCCHHHHHH
Q 038112 465 KPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNC-VPNLVTYNT 543 (625)
Q Consensus 465 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ 543 (625)
.|+...-..+..+....|+..+|...|++...--+..|......+.++....+++..|...++.+.+.+. ..++.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3444444455555555566666666665555433344555555555555555666666666555554310 001233334
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHH
Q 038112 544 LMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFE 594 (625)
Q Consensus 544 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 594 (625)
+++.+...|.++.|...|+.+++ .-|+...-......+.++|+..++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 55555566666666666666555 44555444444444555555554443
No 168
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.0002 Score=62.35 Aligned_cols=120 Identities=20% Similarity=0.198 Sum_probs=88.2
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---ChhHHHHHHHHHHHc
Q 038112 491 CCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTG---DCDKALEIWNHILEE 567 (625)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 567 (625)
++.-+..+ +.|...|..|+..|...|+++.|...|.+..+. .++|+..+..++.++.... +..++..++++++.
T Consensus 145 Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~- 221 (287)
T COG4235 145 LETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA- 221 (287)
T ss_pred HHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh-
Confidence 33334443 557888888888888888888888888888886 3567778777777765533 45678888888888
Q ss_pred CCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038112 568 RLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVR 616 (625)
Q Consensus 568 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 616 (625)
.+| |......+...+...|++.+|...++.|++. -|....+..++.
T Consensus 222 -~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 222 -LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred -cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 667 5567777778888888999999888888863 355555555544
No 169
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.10 E-value=9.3e-06 Score=54.71 Aligned_cols=63 Identities=14% Similarity=-0.016 Sum_probs=55.4
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCC
Q 038112 43 HILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCE 106 (625)
Q Consensus 43 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 106 (625)
.++..+.+.|++++|++.|+.+++.. |.+...+..++.++...|++++|..+|+++.+..|.+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 46778889999999999999999997 4588999999999999999999999999998877764
No 170
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.07 E-value=0.007 Score=58.74 Aligned_cols=177 Identities=13% Similarity=0.057 Sum_probs=108.9
Q ss_pred CCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHH----------HHHHhcCChhhHHHHHHHHHhCC
Q 038112 167 ETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMI----------NGLCKCGRFDECLEMWDRMKKNE 236 (625)
Q Consensus 167 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~g~~~~a~~~~~~~~~~~ 236 (625)
.|.+..|..+++.....-.++.|...|-+...-. .......|- ..-.--|++++|.+++-.+..+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~----Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA----GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc----chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 5678888888888877777888887776654332 221111111 12223478888888887665332
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 038112 237 REKDSFTYCSFIHGLCKAGNVEGAERVYREMVES-GIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNI 315 (625)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 315 (625)
..+..+.+.|++-...++++.--.. .-..-...++.+...+.....+++|.+.|..... ...
T Consensus 765 ---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~ 827 (1189)
T KOG2041|consen 765 ---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TEN 827 (1189)
T ss_pred ---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHh
Confidence 2356667778887777666532110 0011245677888888888888888888876442 234
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038112 316 LIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILN 369 (625)
Q Consensus 316 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 369 (625)
.+.++.+..++++-..+.+.+ +-+...+-.+..++...|.-++|.+.+-
T Consensus 828 ~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 556666666666655444333 2255566677788888888888777654
No 171
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.06 E-value=0.0037 Score=55.04 Aligned_cols=67 Identities=15% Similarity=0.049 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH---HHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 038112 276 AVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSY---NILIRGLLENGKVDEAISIWELLREKNCN 342 (625)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 342 (625)
+..+......+...|++++|.+.|+.+....|.+..+. ..++.++.+.+++++|...+++..+..+.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 33344444555556666666666666666655543332 45566666667777777777666665433
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.06 E-value=1.3e-05 Score=57.37 Aligned_cols=79 Identities=28% Similarity=0.320 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHH
Q 038112 255 GNVEGAERVYREMVESGIF-VDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIW 333 (625)
Q Consensus 255 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 333 (625)
|+++.|+.+++++.+..+. ++...+..++.+|.+.|++++|.++++. .+.++.+......++.++.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4455555555555544321 1233334445555555555555555544 2222233344444455555555555555555
Q ss_pred H
Q 038112 334 E 334 (625)
Q Consensus 334 ~ 334 (625)
+
T Consensus 82 ~ 82 (84)
T PF12895_consen 82 E 82 (84)
T ss_dssp H
T ss_pred h
Confidence 4
No 173
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.06 E-value=0.0093 Score=54.61 Aligned_cols=279 Identities=16% Similarity=0.116 Sum_probs=131.3
Q ss_pred CCHHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHH-HHHHHHH
Q 038112 3 ISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPED-VALSVIQ 81 (625)
Q Consensus 3 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~ 81 (625)
+|...+++.-...|++..|..+.+. .+.+ ..-+-.+...|+++.| +..+++.+ +++ ++..++.
T Consensus 1 IS~a~IA~~A~~~GR~~LA~~LL~~-------Ep~~---~~qVplLL~m~e~e~A---L~kAi~Sg---D~DLi~~vLl~ 64 (319)
T PF04840_consen 1 ISYAEIARKAYEEGRPKLATKLLEL-------EPRA---SKQVPLLLKMGEDELA---LNKAIESG---DTDLIYLVLLH 64 (319)
T ss_pred CCHHHHHHHHHHcChHHHHHHHHHc-------CCCh---HHHHHHHhcCCchHHH---HHHHHHcC---CccHHHHHHHH
Confidence 5788999999999999999998875 1112 2224455677887777 66777776 344 5555555
Q ss_pred HHHccCCchHHHHHHHHhHHhhCCCcch---hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHH
Q 038112 82 AYGKNSMPDKALDVFQRMNEIFGCEAGI---LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVF 158 (625)
Q Consensus 82 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 158 (625)
.--+.. ..-|.++....|..... +++..+.+.-..+|.+--.. .......+-.++ +..+.+.-...+
T Consensus 65 L~~~l~-----~s~f~~il~~~p~a~~l~~~~~r~~~~~~L~~~y~q~d~~----~~~a~~~l~~~~-~~~~~~~~~~~L 134 (319)
T PF04840_consen 65 LKRKLS-----LSQFFKILNQNPVASNLYKKYCREQDRELLKDFYYQEDRF----QELANLHLQEAL-SQKDVEEKISFL 134 (319)
T ss_pred HHHhCC-----HHHHHHHHHhCcchHHHHHHHHHhccHHHHHHHHHhcchH----HHHHHHHHHHHH-hCCChHHHHHHH
Confidence 443222 12233444444432222 45545555544444331110 011111111111 112333322222
Q ss_pred HHHHhC-CCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 038112 159 DEMFER-GVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNER 237 (625)
Q Consensus 159 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 237 (625)
..+.+. +-..+......++.-..+ -.++-..+....+......+.+..+.-+...|+...|.++-.+..
T Consensus 135 ~~a~~~y~~~k~~~f~~~~~e~q~~------Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk---- 204 (319)
T PF04840_consen 135 KQAQKLYSKSKNDAFEAKLIEEQIK------LLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEFK---- 204 (319)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHH------HHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHcC----
Confidence 222221 000010111111111110 011111111111011112234444555666666666666655554
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 038112 238 EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILI 317 (625)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 317 (625)
-|+...|...+.+++..++|++-.++... +-++..|...+..|.+.|...+|..++..+. +..-+
T Consensus 205 v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~~---------~~~rv 269 (319)
T PF04840_consen 205 VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKIP---------DEERV 269 (319)
T ss_pred CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhCC---------hHHHH
Confidence 45666666666777777776665554321 1133445556666666666666666665521 13445
Q ss_pred HHHHhCCCHHHHHHH
Q 038112 318 RGLLENGKVDEAISI 332 (625)
Q Consensus 318 ~~~~~~~~~~~a~~~ 332 (625)
..|.+.|++.+|.+.
T Consensus 270 ~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 270 EMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHCCCHHHHHHH
Confidence 556666666666544
No 174
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.0001 Score=64.06 Aligned_cols=118 Identities=9% Similarity=0.047 Sum_probs=67.3
Q ss_pred HHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHh
Q 038112 20 TALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRM 99 (625)
Q Consensus 20 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 99 (625)
..+.-++.-+.++ |.+...|..|+.+|...|++..|...|.++.+.. +.+++.+..++..+..+.+
T Consensus 140 ~l~a~Le~~L~~n--P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~----------- 205 (287)
T COG4235 140 ALIARLETHLQQN--PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAG----------- 205 (287)
T ss_pred HHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcC-----------
Confidence 3334444444444 5555555555555555555555555555555543 2344455444444322211
Q ss_pred HHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 038112 100 NEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERG 165 (625)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 165 (625)
...-.++..+|++++..+ +.|+.+...+...+...|++.+|...++.|.+..
T Consensus 206 -------------~~~ta~a~~ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 206 -------------QQMTAKARALLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred -------------CcccHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 112345666666666665 5667777777777888888888888888888774
No 175
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.04 E-value=0.01 Score=54.52 Aligned_cols=433 Identities=10% Similarity=0.059 Sum_probs=229.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch---h----hhcCChHHHHHHHHHHHHCCCC
Q 038112 60 ILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI---L----CRKRQFEKAKRFLNSLWEKGLK 132 (625)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~----~~~~~~~~A~~~~~~~~~~~~~ 132 (625)
.+++-++.+ |.+...|..|++-+..+|.+++-+++++++...+|..+.+ + ...++|...+.+|.+++...
T Consensus 30 rLRerIkdN-PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-- 106 (660)
T COG5107 30 RLRERIKDN-PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS-- 106 (660)
T ss_pred HHHHHhhcC-chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--
Confidence 455556665 4588899999999999999999999999998888877777 2 23478889999999998875
Q ss_pred CCHhHHHHHHHHHHhcCCh------hhHHHHHHHHHh-CCCCCC-chhhHHHHHHH---------HhcCChhHHHHHHHH
Q 038112 133 PDVYSYGTVINGLVKSGDL------LGALAVFDEMFE-RGVETN-VVCYNILIDGF---------FKKGDYMRAKEIWER 195 (625)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~---------~~~g~~~~a~~~~~~ 195 (625)
.+...|...+.--.+.+.. ....+.|+-... .++.|- ...|...+..+ .++.+.+..+..|.+
T Consensus 107 l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~r 186 (660)
T COG5107 107 LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMR 186 (660)
T ss_pred ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 4466677666644443311 122344444443 234443 23344433322 123345556666666
Q ss_pred HHhCCCCCCCcchHHHH------HHHHHh---cC----ChhhHHHHHHHHHh--CCCC----CChhhHHHHHHHHHhcCC
Q 038112 196 LVMETSVYPNVVTYNVM------INGLCK---CG----RFDECLEMWDRMKK--NERE----KDSFTYCSFIHGLCKAGN 256 (625)
Q Consensus 196 ~~~~~~~~~~~~~~~~l------~~~~~~---~g----~~~~a~~~~~~~~~--~~~~----~~~~~~~~l~~~~~~~~~ 256 (625)
++..+ ...-...|+.. +.-... -| -+-.|...++++.. .|.. .+..+++...+
T Consensus 187 al~tP-~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r------- 258 (660)
T COG5107 187 ALQTP-MGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAAR------- 258 (660)
T ss_pred HHcCc-cccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccc-------
Confidence 66532 11101112111 000000 00 11222333333221 1110 01111111000
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-----CC-H-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHH
Q 038112 257 VEGAERVYREMVESGIFVDAVTYNAMIDGFCRA-----GK-I-KECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEA 329 (625)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~-~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 329 (625)
....-|...+.--... |+ . ...--+++.....-+..+..|.....-+...++-+.|
T Consensus 259 -----------------~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~a 321 (660)
T COG5107 259 -----------------TSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKA 321 (660)
T ss_pred -----------------cccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHH
Confidence 0000011111111110 00 0 1111123333333333555666666666666666666
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---------------CCCchHHHHHHHHHHhhCCC
Q 038112 330 ISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEG---------------GEGRLADAASLVNRMDKHGC 394 (625)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~~ 394 (625)
+...+..... .+.....+...|.-..+.+.....|++.... ..++.+-..+++-.-.
T Consensus 322 l~tv~rg~~~----spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~---- 393 (660)
T COG5107 322 LKTVERGIEM----SPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRI---- 393 (660)
T ss_pred HHHHHhcccC----CCchheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHH----
Confidence 6655433322 1111112222222223333222222221110 0111111111111111
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhH-H
Q 038112 395 KLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKG-CSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITY-S 472 (625)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~ 472 (625)
..-..+|...++...+..-.+.|+.+|-+..+.+ +.+++..+++++..++ .|+...|..+|+--... .||...| .
T Consensus 394 ~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~ 470 (660)
T COG5107 394 NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKE 470 (660)
T ss_pred hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHH
Confidence 1234567778888888889999999999999887 6678888999998665 47888999999876654 3444433 4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 038112 473 LLINGLCQSKKIDMALKLCCQFLQKGFTPD--VTMYNILIHGLCSAGKVEDALQLYSNMKKR 532 (625)
Q Consensus 473 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 532 (625)
..+..+...++-+.|..+|+..+.. +..+ ..+|..++..-..-|+...+..+-+++...
T Consensus 471 kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 5566677889999999999976653 2223 568888888888889998888887777764
No 176
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.03 E-value=9.6e-05 Score=54.81 Aligned_cols=91 Identities=24% Similarity=0.294 Sum_probs=51.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhh
Q 038112 507 NILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGLCS 585 (625)
Q Consensus 507 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 585 (625)
..++..+...|++++|...++++.+. .+.+...+..++.++...|++++|.+.++.... ..| +..++..++..+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALEL-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHH
Confidence 34455555566666666666666554 123345555566666666666666666666655 233 23455555556666
Q ss_pred cCChHHHHHHHHHHH
Q 038112 586 CSRMSDAFEFLNDAL 600 (625)
Q Consensus 586 ~g~~~~A~~~~~~~~ 600 (625)
.|++++|...++...
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 666666666666655
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.99 E-value=1.1e-05 Score=54.96 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=40.0
Q ss_pred HHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhc
Q 038112 12 LKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQK 68 (625)
Q Consensus 12 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 68 (625)
+..+|++++|+..|+.++... |.++.+...++.++.+.|++++|.++++.+....
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ChhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 345677777777777777666 7777777777777777777777777777777765
No 178
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.98 E-value=3.3e-05 Score=52.81 Aligned_cols=66 Identities=9% Similarity=-0.011 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC-CchHHHHHHHHhHHhh
Q 038112 37 SPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS-MPDKALDVFQRMNEIF 103 (625)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~ 103 (625)
++..|..++..+...|++++|+..|+++++.++ .+..++..++.++...| ++++|+..++++.+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 456677777777777777777777777777753 36667777777777777 5777777777765543
No 179
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.97 E-value=8.1e-05 Score=65.78 Aligned_cols=92 Identities=10% Similarity=0.015 Sum_probs=42.1
Q ss_pred ccCChhHHHHHHHhhccCC-CCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHccCCch
Q 038112 14 AEKNPHTALALFDSATREP-GYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCY--CPEDVALSVIQAYGKNSMPD 90 (625)
Q Consensus 14 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 90 (625)
.+|++++|+..|+..++.. ..+..+.++..++.++...|++++|...|+.+++..|. ..++.+..++.++...|+++
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence 3455555555555544433 11111344455555555555555555555555544321 12334444444454555555
Q ss_pred HHHHHHHHhHHhhCC
Q 038112 91 KALDVFQRMNEIFGC 105 (625)
Q Consensus 91 ~A~~~~~~~~~~~~~ 105 (625)
.|...|+.+.+.+|.
T Consensus 235 ~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 235 KAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHHHCcC
Confidence 555555555444443
No 180
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.97 E-value=0.0022 Score=54.77 Aligned_cols=57 Identities=19% Similarity=0.245 Sum_probs=43.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCc---hhhHHHHHHHHhcCChhHHHHHHHHHHh
Q 038112 141 VINGLVKSGDLLGALAVFDEMFERGVETNV---VCYNILIDGFFKKGDYMRAKEIWERLVM 198 (625)
Q Consensus 141 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 198 (625)
+.+.|.+.|.+..|..-++.|++. .+... ..+..+..+|...|-.++|...-.-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 456788999999999999999988 33333 3566677889999999999887655443
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.97 E-value=0.00031 Score=58.32 Aligned_cols=93 Identities=15% Similarity=0.045 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 038112 242 FTYCSFIHGLCKAGNVEGAERVYREMVESGIFV--DAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRG 319 (625)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 319 (625)
..+..++..+...|++++|+..|+..+.....+ ...++..+..++...|++++|+..++......+.....+..+..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 344555556666666666666666665542221 123566666666667777777777766666655555556666555
Q ss_pred HH-------hCCCHHHHHHHHH
Q 038112 320 LL-------ENGKVDEAISIWE 334 (625)
Q Consensus 320 ~~-------~~~~~~~a~~~~~ 334 (625)
+. ..|+++.|...++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHH
Confidence 55 5666664444443
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.94 E-value=0.0002 Score=54.24 Aligned_cols=92 Identities=13% Similarity=0.042 Sum_probs=52.6
Q ss_pred HHHHHHHccCChhHHHHHHHhhccCCCCC--CCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCC--CCHHHHHHHHHH
Q 038112 7 RLLNLLKAEKNPHTALALFDSATREPGYA--HSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCY--CPEDVALSVIQA 82 (625)
Q Consensus 7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~ 82 (625)
+++.++-..|+.++|+.+|+.++.. |.. .-..++..++.++...|++++|..+++......|. .+..+...++-+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 3455666667777777777766653 211 12345556666666677777777777766665321 123333444455
Q ss_pred HHccCCchHHHHHHHHh
Q 038112 83 YGKNSMPDKALDVFQRM 99 (625)
Q Consensus 83 ~~~~~~~~~A~~~~~~~ 99 (625)
+...|++++|++++-..
T Consensus 85 L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 56666666666665543
No 183
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.93 E-value=0.00015 Score=60.21 Aligned_cols=90 Identities=7% Similarity=-0.144 Sum_probs=68.5
Q ss_pred HccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHccCCch
Q 038112 13 KAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYC--PEDVALSVIQAYGKNSMPD 90 (625)
Q Consensus 13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 90 (625)
..++.+..+...+....++.+.......+..++..+...|++++|...|+.++...+.+ ...++..++.++...|+++
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~ 89 (168)
T CHL00033 10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT 89 (168)
T ss_pred ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH
Confidence 33455666777776655566455557778888889999999999999999998775332 2347888899999999999
Q ss_pred HHHHHHHHhHHh
Q 038112 91 KALDVFQRMNEI 102 (625)
Q Consensus 91 ~A~~~~~~~~~~ 102 (625)
+|+..++++...
T Consensus 90 eA~~~~~~Al~~ 101 (168)
T CHL00033 90 KALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999887553
No 184
>PRK15331 chaperone protein SicA; Provisional
Probab=97.93 E-value=7.7e-05 Score=58.75 Aligned_cols=87 Identities=11% Similarity=-0.075 Sum_probs=71.1
Q ss_pred HHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchH
Q 038112 12 LKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDK 91 (625)
Q Consensus 12 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 91 (625)
+..+|++++|..+|+.....+ +.++.-+..|+.++-..+++++|+..|..+...++ .++......+.++...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 447888888888888887777 77888888888888888888888888888887764 466777788888888888888
Q ss_pred HHHHHHHhHH
Q 038112 92 ALDVFQRMNE 101 (625)
Q Consensus 92 A~~~~~~~~~ 101 (625)
|+..|+.+..
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 8888887744
No 185
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.92 E-value=0.00073 Score=56.34 Aligned_cols=83 Identities=12% Similarity=0.007 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 038112 244 YCSFIHGLCKAGNVEGAERVYREMVESGIFVD--AVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLL 321 (625)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (625)
+..+...+...|++++|...|++.++....+. ...+..++.++.+.|++++|...+++.....+.+...+..+..++.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 44444555555555555555555554322211 2345555555566666666666666655555555555555555555
Q ss_pred hCCCH
Q 038112 322 ENGKV 326 (625)
Q Consensus 322 ~~~~~ 326 (625)
..|+.
T Consensus 118 ~~g~~ 122 (172)
T PRK02603 118 KRGEK 122 (172)
T ss_pred HcCCh
Confidence 55543
No 186
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.91 E-value=0.00034 Score=63.27 Aligned_cols=129 Identities=14% Similarity=0.095 Sum_probs=67.6
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038112 435 SYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQ-SKKIDMALKLCCQFLQKGFTPDVTMYNILIHGL 513 (625)
Q Consensus 435 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 513 (625)
+|..++....+.+..+.|..+|.++.+.+ ..+...|......-.. .++.+.|.++|+..++. ++.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555566666666666665331 2233344433333222 34445566666666654 344555566666666
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 514 CSAGKVEDALQLYSNMKKRNCVPNL---VTYNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 514 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
...++.+.|..+|++.... ++++. .+|...+..-.+.|+.+.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666654 22222 3566666666666666666666666665
No 187
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.88 E-value=0.00023 Score=64.00 Aligned_cols=81 Identities=15% Similarity=-0.082 Sum_probs=50.2
Q ss_pred HHHhhCCCChhHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHccCCchHHHHHHHHhHH-------------hhCCCcc
Q 038112 45 LRRLIDPKLVVHVSRILELIEIQKCY---CPEDVALSVIQAYGKNSMPDKALDVFQRMNE-------------IFGCEAG 108 (625)
Q Consensus 45 ~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~~~~~~ 108 (625)
+..+++.|+.......|+.+++.|.. .-..+|..|+.+|+-.++|+.|.++...-+. ..+....
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 45677888888888888888887643 1123667778888888888888776543211 1122222
Q ss_pred hhhhcCChHHHHHHHHH
Q 038112 109 ILCRKRQFEKAKRFLNS 125 (625)
Q Consensus 109 ~~~~~~~~~~A~~~~~~ 125 (625)
.+--.|.|++|+.+..+
T Consensus 104 tlKv~G~fdeA~~cc~r 120 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFR 120 (639)
T ss_pred hhhhhcccchHHHHHHH
Confidence 25556777777654443
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.88 E-value=0.0015 Score=49.53 Aligned_cols=92 Identities=17% Similarity=0.106 Sum_probs=57.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHH
Q 038112 247 FIHGLCKAGNVEGAERVYREMVESGIFVD--AVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL---NVVSYNILIRGLL 321 (625)
Q Consensus 247 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~ 321 (625)
+..++-..|+.++|+.+|++.+..|.... ...+..+...+...|++++|..+++......|. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45556666777777777777777665433 334555666677777777777777777665554 4444444555666
Q ss_pred hCCCHHHHHHHHHHHHH
Q 038112 322 ENGKVDEAISIWELLRE 338 (625)
Q Consensus 322 ~~~~~~~a~~~~~~~~~ 338 (625)
..|+.++|+..+-....
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 77777777766654443
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.87 E-value=6.3e-05 Score=51.40 Aligned_cols=63 Identities=21% Similarity=0.285 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHH
Q 038112 503 VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTG-DCDKALEIWNHILE 566 (625)
Q Consensus 503 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 566 (625)
+..|..++..+...|++++|+..|++.++.+ +.+...+..++.++...| ++++|++.++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3444444555555555555555555555431 223444455555555555 35555555555444
No 190
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.85 E-value=0.0012 Score=64.94 Aligned_cols=143 Identities=15% Similarity=0.131 Sum_probs=77.1
Q ss_pred CCCChhhHHHHHHHHhcc-----CCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHhcc--------CCHHHHHHHHHHH
Q 038112 429 CSPTVVSYNTLINGLCKV-----ERFGEAYSFVKEMLEKGWKPDM-ITYSLLINGLCQS--------KKIDMALKLCCQF 494 (625)
Q Consensus 429 ~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------~~~~~A~~~~~~~ 494 (625)
.+.+...|...+++.... +....|..+|+++++. .|+. ..+..+..++... .+...+.+...+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345666777776664322 2355677777777764 4443 3333333322211 1122333333333
Q ss_pred HhC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH
Q 038112 495 LQK-GFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI 573 (625)
Q Consensus 495 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 573 (625)
... ..+.+...+..+.......|++++|...++++... .|+...|..++.++...|+.++|.+.++++.. +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 221 12234455555555555566777777777776664 35666666667777777777777777777666 56655
Q ss_pred HHHH
Q 038112 574 ISYN 577 (625)
Q Consensus 574 ~~~~ 577 (625)
.+|.
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 5443
No 191
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.85 E-value=0.00028 Score=63.47 Aligned_cols=225 Identities=19% Similarity=0.160 Sum_probs=97.9
Q ss_pred HHhcCChhhHHHHHHHHHhCCCC---CCchhhHHHHHHHHhcCChhHHHHHHHHHH----hCCCCCCCcchHHHHHHHHH
Q 038112 145 LVKSGDLLGALAVFDEMFERGVE---TNVVCYNILIDGFFKKGDYMRAKEIWERLV----METSVYPNVVTYNVMINGLC 217 (625)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~~l~~~~~ 217 (625)
+++.|+......+|+.+++.|.. .=+.+|..|.++|.-.+++++|++....=+ ..+.-.....+...|...+-
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 45556666666666666555432 112345555556666666666665432100 00101112233334445555
Q ss_pred hcCChhhHHHHHHHHHh----CCC-CCChhhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHC--
Q 038112 218 KCGRFDECLEMWDRMKK----NER-EKDSFTYCSFIHGLCKAGN--------------------VEGAERVYREMVES-- 270 (625)
Q Consensus 218 ~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~-- 270 (625)
-.|.+++|+-+..+-+. .|. ......+..+...|...|. ++.|.+.|.+-++.
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666554433221 110 1122334445555554442 22233333222111
Q ss_pred --CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCC--cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--
Q 038112 271 --GIF-VDAVTYNAMIDGFCRAGKIKECFELWEVMG----RKGCL--NVVSYNILIRGLLENGKVDEAISIWELLREK-- 339 (625)
Q Consensus 271 --~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 339 (625)
|-. .--..|..+...|.-.|+++.|+...+.-. +-+.. ...++..+..+++-.|+++.|.+.|+.....
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 000 011233344444445566666655443221 11111 3445556666666666666666666543322
Q ss_pred --CC-CCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038112 340 --NC-NADSTTHGVLINGLCKNGYLNKAIQILN 369 (625)
Q Consensus 340 --~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 369 (625)
|- .....+...+.+.|.-..++++|+.++.
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~ 299 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQ 299 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 11 1122333445555555555555555554
No 192
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.83 E-value=0.0075 Score=51.73 Aligned_cols=65 Identities=17% Similarity=0.130 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 038112 276 AVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL---NVVSYNILIRGLLENGKVDEAISIWELLREKN 340 (625)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 340 (625)
...+...+..+...|++.+|.+.|+.+....|. ...+...++.++.+.|+++.|...++..+..-
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 344445555666677777777777777665543 44556666777777777777777777776653
No 193
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.0022 Score=54.29 Aligned_cols=125 Identities=14% Similarity=0.093 Sum_probs=86.2
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcc----------
Q 038112 39 HLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAG---------- 108 (625)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------- 108 (625)
.+-+.++..+...|.|.-....+..+++.+++.++.....+++.-.+.||.+.|...|+++.+..+....
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3445677788889999999999999999998889999999999999999999999999987543222111
Q ss_pred ---hhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112 109 ---ILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER 164 (625)
Q Consensus 109 ---~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 164 (625)
++.-.+++.+|...|.+++..+ +.++..-|.-.-++.-.|+..+|++.++.|...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1445556666666666665554 334444444333344456666666666666655
No 194
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.80 E-value=0.0018 Score=63.83 Aligned_cols=134 Identities=15% Similarity=0.057 Sum_probs=82.3
Q ss_pred CCCCHhhHHHHHHHHhc--c---CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcC--------CCHHHHHHHHHHH
Q 038112 464 WKPDMITYSLLINGLCQ--S---KKIDMALKLCCQFLQKGFTPD-VTMYNILIHGLCSA--------GKVEDALQLYSNM 529 (625)
Q Consensus 464 ~~~~~~~~~~l~~~~~~--~---~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 529 (625)
.+.+...|...+++... . ++...|..+|+++++. .|+ ...+..+..++... .+...+.+...+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 34555666666655432 2 2356777888887775 333 44444444333221 1233444444444
Q ss_pred HhC-CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 530 KKR-NCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 530 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
... ..+.++.++..++-.....|++++|...++++++ +.|+...|..++..+...|+.++|.+.+++...
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 332 1233456677776666677888888888888887 667777777777788888888888888887775
No 195
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.79 E-value=0.00065 Score=61.48 Aligned_cols=131 Identities=14% Similarity=0.079 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 038112 399 YTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLING-LCKVERFGEAYSFVKEMLEKGWKPDMITYSLLING 477 (625)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 477 (625)
.+|..++...-+.+..+.|+.+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888888889999999999999998542 2345556555555 33356777799999998876 56677888888899
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 038112 478 LCQSKKIDMALKLCCQFLQKGFTPD---VTMYNILIHGLCSAGKVEDALQLYSNMKKR 532 (625)
Q Consensus 478 ~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 532 (625)
+...++.+.|..+|++.+.. +.++ ...|...+..-.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999876 3333 358899998888999999999999999885
No 196
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.79 E-value=5.1e-05 Score=43.35 Aligned_cols=33 Identities=39% Similarity=0.835 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC
Q 038112 575 SYNITLKGLCSCSRMSDAFEFLNDALCRGILPT 607 (625)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (625)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466677777777777777777777777777665
No 197
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.78 E-value=9.4e-05 Score=51.24 Aligned_cols=60 Identities=17% Similarity=0.102 Sum_probs=52.1
Q ss_pred HHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcC
Q 038112 8 LLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKC 69 (625)
Q Consensus 8 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 69 (625)
|.+++..+++++.|+..++.++..+ |.++..+...+.++.+.|++.+|.+.++.+++.+|
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4577888899999999999988887 88888888899999999999999999999998874
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.76 E-value=4.8e-05 Score=51.80 Aligned_cols=57 Identities=16% Similarity=0.069 Sum_probs=49.4
Q ss_pred hCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCC
Q 038112 49 IDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCE 106 (625)
Q Consensus 49 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 106 (625)
.+.|++++|.+.|+.++...| .+..+...++.+|.+.|++++|..+++++....|..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hhccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 468999999999999999974 588999999999999999999999999997765543
No 199
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.75 E-value=6e-05 Score=43.05 Aligned_cols=33 Identities=61% Similarity=1.033 Sum_probs=18.7
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 038112 435 SYNTLINGLCKVERFGEAYSFVKEMLEKGWKPD 467 (625)
Q Consensus 435 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 467 (625)
+|+.++.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 200
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.74 E-value=0.00066 Score=63.81 Aligned_cols=124 Identities=14% Similarity=0.184 Sum_probs=87.0
Q ss_pred CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 038112 463 GWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQK--GFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVT 540 (625)
Q Consensus 463 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 540 (625)
+.+.+...+..++..+....+.+.+..++.++... ....-..+...+++.|...|..++++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556666777777777777777788877777664 1111123445777888888888888888887777788888888
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 038112 541 YNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSC 586 (625)
Q Consensus 541 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 586 (625)
++.|+..+.+.|++..|.++...|...+.-.+..++.-.+.+|++.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888877777655555666665555566555
No 201
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.73 E-value=7.5e-05 Score=42.28 Aligned_cols=32 Identities=19% Similarity=0.434 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHCCCCC
Q 038112 575 SYNITLKGLCSCSRMSDAFEFLNDALCRGILP 606 (625)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (625)
+|+.++.+|.+.|+++.|.++++.|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 202
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.71 E-value=0.00077 Score=48.90 Aligned_cols=74 Identities=16% Similarity=0.390 Sum_probs=43.6
Q ss_pred HHHccCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhhc--------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038112 547 GLFKTGDCDKALEIWNHILEERL-RPDIISYNITLKGLCSC--------SRMSDAFEFLNDALCRGILPTTITWHILVRA 617 (625)
Q Consensus 547 ~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (625)
.|...+++...-.+|+.+.+.|+ -|+..+|+.++.+..+. ++.-+.+..|+.|+..+++|+..+|+.++..
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 33444555555555555555555 55555555555544332 1234456677777777777777777777777
Q ss_pred HHh
Q 038112 618 VMN 620 (625)
Q Consensus 618 ~~~ 620 (625)
+.+
T Consensus 114 Llk 116 (120)
T PF08579_consen 114 LLK 116 (120)
T ss_pred HHH
Confidence 654
No 203
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.71 E-value=0.00044 Score=59.45 Aligned_cols=100 Identities=13% Similarity=0.078 Sum_probs=59.7
Q ss_pred HHHHccCChhHHHHHHHhhccC-CCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHcc
Q 038112 10 NLLKAEKNPHTALALFDSATRE-PGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCY--CPEDVALSVIQAYGKN 86 (625)
Q Consensus 10 ~~l~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 86 (625)
--+...|++..|...|..-++. ++.+-.+.+++-|+.++...|++++|...|..+.+..|. .-++.+..|+.+..+.
T Consensus 149 ~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 149 LDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence 3344556666666666654432 344455566666666666666666666666666665432 2335666666666666
Q ss_pred CCchHHHHHHHHhHHhhCCCcch
Q 038112 87 SMPDKALDVFQRMNEIFGCEAGI 109 (625)
Q Consensus 87 ~~~~~A~~~~~~~~~~~~~~~~~ 109 (625)
|+.++|...|+++.+.+|..+.+
T Consensus 229 ~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 229 GNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred cCHHHHHHHHHHHHHHCCCCHHH
Confidence 66666666666666666655443
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.70 E-value=0.00067 Score=60.08 Aligned_cols=101 Identities=12% Similarity=-0.031 Sum_probs=70.0
Q ss_pred HHHHHHHHHh-hCCCChhHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCC
Q 038112 39 HLFHHILRRL-IDPKLVVHVSRILELIEIQKCYCP--EDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQ 115 (625)
Q Consensus 39 ~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 115 (625)
..++..+..+ .+.|++++|...|+.+++..|... +..+..++.+|...|++++|...|+.+...+|..+.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~------- 215 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK------- 215 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-------
Confidence 4444444443 567888888888888888865432 467788888888888888888888888766654332
Q ss_pred hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112 116 FEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER 164 (625)
Q Consensus 116 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 164 (625)
...++..++..+...|+.+.|..+|+.+++.
T Consensus 216 ------------------~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 216 ------------------AADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred ------------------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2334444555666777888888888877776
No 205
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.68 E-value=9.2e-05 Score=41.90 Aligned_cols=32 Identities=38% Similarity=0.709 Sum_probs=17.7
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 038112 540 TYNTLMDGLFKTGDCDKALEIWNHILEERLRP 571 (625)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 571 (625)
+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 206
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.67 E-value=0.0011 Score=62.35 Aligned_cols=124 Identities=16% Similarity=0.126 Sum_probs=101.7
Q ss_pred CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH
Q 038112 428 GCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEK--GWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTM 505 (625)
Q Consensus 428 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 505 (625)
+.+.+......++..+....+.+++..++.+.... ....-..|...+++.|...|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34456667788888888888899999999988865 2222234667999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 038112 506 YNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKT 551 (625)
Q Consensus 506 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 551 (625)
++.|+..+.+.|++..|.++...|...+...++.++..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998876666777766555555554
No 207
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.66 E-value=0.042 Score=49.81 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=75.6
Q ss_pred hcCChhhHHHHHHHHHhCCCCCChhhHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCcCHH--HHHHHHHHHHhcCCHH
Q 038112 218 KCGRFDECLEMWDRMKKNEREKDSFTYCSFI--HGLCKAGNVEGAERVYREMVESGIFVDAV--TYNAMIDGFCRAGKIK 293 (625)
Q Consensus 218 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~ 293 (625)
-.|+-..|.++-.+..+. +..|..-...++ ++-.-.|+++.|.+-|+.|... |... -+..|.-...+.|..+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence 356666666665544321 112333333333 3445678888888888888752 2221 1223333345678888
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112 294 ECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREK 339 (625)
Q Consensus 294 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (625)
.|..+-+......|.-..++...+...+..|+++.|+++.+.-...
T Consensus 172 aAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 172 AARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 8888888888877778888888888888888888888888766554
No 208
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.64 E-value=0.012 Score=50.36 Aligned_cols=179 Identities=15% Similarity=0.120 Sum_probs=115.9
Q ss_pred CCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch----
Q 038112 36 HSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCY--CPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI---- 109 (625)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---- 109 (625)
.++..+..-+...++.|++++|.+.|+.+..+.|. -...+..-++.++.+.++++.|+..+++....+|..+++
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 35677777888888999999999999999987643 234466667778889999999999999998988888887
Q ss_pred hhh-----------cCChH---HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHH
Q 038112 110 LCR-----------KRQFE---KAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNI 175 (625)
Q Consensus 110 ~~~-----------~~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 175 (625)
|.+ ..+.. .|..-|+.++.+= || +.-...|...+..+... =...=..
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--Pn-------------S~Ya~dA~~~i~~~~d~----LA~~Em~ 172 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PN-------------SRYAPDAKARIVKLNDA----LAGHEMA 172 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CC-------------CcchhhHHHHHHHHHHH----HHHHHHH
Confidence 111 11222 2222222222221 11 11112222222222211 0011135
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCCcc---hHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112 176 LIDGFFKKGDYMRAKEIWERLVMETSVYPNVV---TYNVMINGLCKCGRFDECLEMWDRMKKN 235 (625)
Q Consensus 176 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (625)
+++.|.+.|.+..|..-++.+++.. +.+.. .+-.+..+|...|-.++|.+.-.-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y--~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENY--PDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 7888999999999999999999873 33333 4556678999999999998887666544
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.033 Score=47.51 Aligned_cols=140 Identities=13% Similarity=0.053 Sum_probs=105.4
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC-----CCCCCHHHHHHH
Q 038112 435 SYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQK-----GFTPDVTMYNIL 509 (625)
Q Consensus 435 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l 509 (625)
..+.++..+...|.+.-....+.+.++...+.+......+++.-.+.|+.+.|...|++..+. ++..+..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445667777778888888889999988766667778888888889999999999999876653 223333334444
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHH
Q 038112 510 IHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYN 577 (625)
Q Consensus 510 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 577 (625)
...|.-.+++..|...+.++...+ +.|+...|.-+-+..-.|+...|++..+.+.+ ..|.+.+-.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 455667788999999998888763 44677777777778888999999999999998 666554443
No 210
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.57 E-value=0.00098 Score=51.43 Aligned_cols=64 Identities=5% Similarity=-0.148 Sum_probs=42.9
Q ss_pred HHHHccCChhHHHHHHHhhccCC-CCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCH
Q 038112 10 NLLKAEKNPHTALALFDSATREP-GYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPE 73 (625)
Q Consensus 10 ~~l~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 73 (625)
.-..+.|+|.+|+..|+.+..+. ..+..+.+-..++.++.+++++++|...+++.++.+|....
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 44566777777777777766543 33455566666777777777777777777777777654333
No 211
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.56 E-value=0.09 Score=50.85 Aligned_cols=321 Identities=11% Similarity=0.039 Sum_probs=166.2
Q ss_pred CCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch---h--
Q 038112 36 HSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI---L-- 110 (625)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~-- 110 (625)
.+...|..++.--......+.+..+|..++..- |.-...|...+..-.+.|..+.+..+|++.....|..... |
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLA 121 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344555555544334444455666666666553 4344566677777778888888888888877766654444 1
Q ss_pred ---hhcCChHHHHHHHHHHHHC-CCC-CCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHH---Hh
Q 038112 111 ---CRKRQFEKAKRFLNSLWEK-GLK-PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGF---FK 182 (625)
Q Consensus 111 ---~~~~~~~~A~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~ 182 (625)
...|+.+..+..|+++... |.. -....|...|..-..++++.....++++.++.- ...++.....| .+
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLN 197 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHh
Confidence 1346667777777776654 211 234457777777777788888888888877651 11122111111 11
Q ss_pred c------CChhHHHHHHHHHHhCC---CCCCCcchHHHHHHHHHh-cCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038112 183 K------GDYMRAKEIWERLVMET---SVYPNVVTYNVMINGLCK-CGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLC 252 (625)
Q Consensus 183 ~------g~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 252 (625)
. ...+++.++-.....+. ...+....+...+.--.. .+..+++...+.+.. ..--..+.
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~ 266 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQ 266 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHH
Confidence 1 12222222211111100 000000001110000000 001111111111100 00011222
Q ss_pred hcCCHHHHHHHHHHHHHCC---CC----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCC
Q 038112 253 KAGNVEGAERVYREMVESG---IF----VDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGK 325 (625)
Q Consensus 253 ~~~~~~~a~~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 325 (625)
......+....++..++.. ++ ++..+|...+..-...|+++.+.-+|+...-........|...+......|+
T Consensus 267 ~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 267 KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGD 346 (577)
T ss_pred hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCc
Confidence 2223333444444444331 12 2356777778888888999999999988876555577788888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112 326 VDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVE 372 (625)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 372 (625)
.+-|..++....+...+-.+.+...-....-..|++..|..+++.+.
T Consensus 347 ~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~ 393 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIE 393 (577)
T ss_pred hhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 88888777766665433233332222233444567777777777443
No 212
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.56 E-value=0.0048 Score=50.65 Aligned_cols=87 Identities=10% Similarity=-0.120 Sum_probs=47.0
Q ss_pred hhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHH
Q 038112 18 PHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQ 97 (625)
Q Consensus 18 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 97 (625)
++.|.--|.+++... |.-|.+++.++--+...|+++.|.+.|..+...+|.-+....+.-+.. .-.|++.-|.+-|.
T Consensus 81 ~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~ 157 (297)
T COG4785 81 RALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLL 157 (297)
T ss_pred HHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHH
Confidence 344555555555444 566666666666566666666666666666666544333333333332 24566666666555
Q ss_pred HhHHhhCCCc
Q 038112 98 RMNEIFGCEA 107 (625)
Q Consensus 98 ~~~~~~~~~~ 107 (625)
+.-+..|..|
T Consensus 158 ~fYQ~D~~DP 167 (297)
T COG4785 158 AFYQDDPNDP 167 (297)
T ss_pred HHHhcCCCCh
Confidence 5555444444
No 213
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.43 E-value=0.0031 Score=48.72 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch
Q 038112 35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCY--CPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI 109 (625)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 109 (625)
..++..+..-+....+.|++.+|.+.|+.+..+-|. -...+...++.+|.+.+++++|+..+++..+.+|..+.+
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 455777888888899999999999999999998653 244577789999999999999999999999999998887
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.41 E-value=0.062 Score=52.10 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038112 275 DAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLING 354 (625)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 354 (625)
+..+...+..-+.+...+.-|-++|..+... ..+.+.....+++++|..+-++..+. -...+....+-
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~hPe~----~~dVy~pyaqw 813 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKHPEF----KDDVYMPYAQW 813 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhCccc----cccccchHHHH
Confidence 3445555555556667777777777776542 34566677778888887776654443 22234444455
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 038112 355 LCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMD 390 (625)
Q Consensus 355 ~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~ 390 (625)
+....++++|.+.|-+ .|+..+|..+++++.
T Consensus 814 LAE~DrFeEAqkAfhk-----AGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHK-----AGRQREAVQVLEQLT 844 (1081)
T ss_pred hhhhhhHHHHHHHHHH-----hcchHHHHHHHHHhh
Confidence 5555666666555543 233444444444444
No 215
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.41 E-value=0.0035 Score=45.64 Aligned_cols=76 Identities=24% Similarity=0.442 Sum_probs=50.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccC--------ChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038112 510 IHGLCSAGKVEDALQLYSNMKKRNC-VPNLVTYNTLMDGLFKTG--------DCDKALEIWNHILEERLRPDIISYNITL 580 (625)
Q Consensus 510 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 580 (625)
+.-+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ..-..+.+|+.++..+++|+.++|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344455777777777777777776 667777777666655422 2334566777787777888888888777
Q ss_pred HHHhh
Q 038112 581 KGLCS 585 (625)
Q Consensus 581 ~~~~~ 585 (625)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 76654
No 216
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.026 Score=47.55 Aligned_cols=206 Identities=14% Similarity=0.147 Sum_probs=108.3
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhH
Q 038112 75 VALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGA 154 (625)
Q Consensus 75 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 154 (625)
.|.....+|-...+++.|...+.+..+-+..+.+.+...+.++.|.-+.+++..-+ .-+..|+.....|..+|..+.|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kls--Evvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLS--EVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhCCcchH
Confidence 44455556666777777777777766555555666666666777777777665532 3345567777778888888887
Q ss_pred HHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCCCcchHHHHHHHHHhcCChhhHHHHHH
Q 038112 155 LAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMET----SVYPNVVTYNVMINGLCKCGRFDECLEMWD 230 (625)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 230 (625)
-..+++.-+. ...-+.+.|+++|++....- ....-...+......+.+...+++|-..+.
T Consensus 111 AmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 111 AMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFL 174 (308)
T ss_pred HHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHH
Confidence 7777665443 11223344444444432210 000111123334455666666666655444
Q ss_pred HHHhC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038112 231 RMKKN----EREKD-SFTYCSFIHGLCKAGNVEGAERVYREMVESGI---FVDAVTYNAMIDGFCRAGKIKECFELW 299 (625)
Q Consensus 231 ~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~ 299 (625)
+-... .--++ -..|...|-.+....++..|...++.--+.+- .-+..+...|+.+| ..|+.+++.+++
T Consensus 175 Ke~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 175 KEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 32210 00111 12344455555566677777777766444321 12344555555554 345555554443
No 217
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.37 E-value=0.0013 Score=45.49 Aligned_cols=54 Identities=20% Similarity=0.203 Sum_probs=27.9
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 512 GLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 512 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
.|.+.+++++|.++++.+...+ |.++..+...+.++...|++++|.+.++++++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445555555555555555541 33444455555555555555555555555555
No 218
>PRK15331 chaperone protein SicA; Provisional
Probab=97.37 E-value=0.016 Score=46.02 Aligned_cols=92 Identities=13% Similarity=0.077 Sum_probs=68.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCH
Q 038112 247 FIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKV 326 (625)
Q Consensus 247 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 326 (625)
...-+...|++++|..+|.-+.-.++. +..-+..|..++...+++++|+..|.......+.|+........++...|+.
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 344455778888888888777765433 6666777777777788888888888777777667777777778888888888
Q ss_pred HHHHHHHHHHHHc
Q 038112 327 DEAISIWELLREK 339 (625)
Q Consensus 327 ~~a~~~~~~~~~~ 339 (625)
+.|...|......
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 8888887777763
No 219
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.29 E-value=0.00043 Score=38.02 Aligned_cols=28 Identities=46% Similarity=0.859 Sum_probs=13.7
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 038112 435 SYNTLINGLCKVERFGEAYSFVKEMLEK 462 (625)
Q Consensus 435 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 462 (625)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444555555555555555555544443
No 220
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.042 Score=48.11 Aligned_cols=153 Identities=10% Similarity=-0.003 Sum_probs=80.3
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHH
Q 038112 42 HHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKR 121 (625)
Q Consensus 42 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 121 (625)
..-+......|++.+|..+|..+....+. +..+...++.+|...|+++.|..++..++.....
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~---------------- 200 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD---------------- 200 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchh----------------
Confidence 33444555667777777777777766533 4566666777777777777777777666431110
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 038112 122 FLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETS 201 (625)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 201 (625)
........-+..+.+.....+...+-++.-.. +-|...-..++..+...|+.+.|.+.+-.+.+.+.
T Consensus 201 -----------~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 201 -----------KAAHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred -----------hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 00011111122223333333333333332222 22555566666777777777777776666655543
Q ss_pred CCCCcchHHHHHHHHHhcCChhh
Q 038112 202 VYPNVVTYNVMINGLCKCGRFDE 224 (625)
Q Consensus 202 ~~~~~~~~~~l~~~~~~~g~~~~ 224 (625)
...|...-..++..+.-.|.-+.
T Consensus 268 ~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 268 GFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred cccCcHHHHHHHHHHHhcCCCCH
Confidence 34444455566665555554333
No 221
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.28 E-value=0.088 Score=51.11 Aligned_cols=271 Identities=14% Similarity=0.115 Sum_probs=130.2
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038112 173 YNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLC 252 (625)
Q Consensus 173 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 252 (625)
+..-+..|...|.+++|.++---- -...-|..|.......=+++-|.+.|.+....
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iaclg-------Vv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl----------------- 614 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIACLG-------VTDTDWRELAMEALEALDFETARKAYIRVRDL----------------- 614 (1081)
T ss_pred ccccchhhhhccchhhhhcccccc-------eecchHHHHHHHHHhhhhhHHHHHHHHHHhcc-----------------
Confidence 333444566667776665532111 11223555554444444444444444433211
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH-----HHHHHHHHHhCCCHH
Q 038112 253 KAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVS-----YNILIRGLLENGKVD 327 (625)
Q Consensus 253 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~ 327 (625)
.+-+.+.-++++.+.|-.|+... +...++-.|++.+|-++|.+-...+.. .+. ...+.+-+...|..+
T Consensus 615 ---~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRA-lEmyTDlRMFD~aQE~~~~g~~~ 687 (1081)
T KOG1538|consen 615 ---RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRA-LEMYTDLRMFDYAQEFLGSGDPK 687 (1081)
T ss_pred ---HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhH-HHHHHHHHHHHHHHHHhhcCChH
Confidence 12222333455555555555432 233444556666666665543322110 011 112333444455544
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 038112 328 EAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNG 407 (625)
Q Consensus 328 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 407 (625)
+-..+.++-.+.. -+..--......+...|+.++|..+.-+ .+=.+.++ ++...-...+..+...+...
T Consensus 688 eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~~d-----~gW~d~li----dI~rkld~~ere~l~~~a~y 756 (1081)
T KOG1538|consen 688 EKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEICGD-----HGWVDMLI----DIARKLDKAEREPLLLCATY 756 (1081)
T ss_pred HHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhhhc-----ccHHHHHH----HHHhhcchhhhhHHHHHHHH
Confidence 4444433322210 0111122344556667777777666541 11111112 22222122344555666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHh-----------hHHHHHH
Q 038112 408 FIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMI-----------TYSLLIN 476 (625)
Q Consensus 408 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l~~ 476 (625)
+.+...+.-|-++|..|-.. ..+.+.....+++.+|..+-+...+ +.|+.. -|...-.
T Consensus 757 lk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqk 825 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQK 825 (1081)
T ss_pred HhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHH
Confidence 67777788888888776532 3456677788899999888777655 233322 1223334
Q ss_pred HHhccCCHHHHHHHHHHHHh
Q 038112 477 GLCQSKKIDMALKLCCQFLQ 496 (625)
Q Consensus 477 ~~~~~~~~~~A~~~~~~~~~ 496 (625)
+|.+.|+-.+|..+++++..
T Consensus 826 AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 826 AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHhcchHHHHHHHHHhhh
Confidence 55566666666666665543
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0088 Score=54.56 Aligned_cols=96 Identities=11% Similarity=0.084 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 038112 503 VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDII-SYNITLK 581 (625)
Q Consensus 503 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~ 581 (625)
..+++.++.+|.+.+++.+|+..-++.+..+ ++|...+..-+.++...|+++.|+..|+++++ +.|+.. +-..++.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHH
Confidence 3466778889999999999999999999874 67888999999999999999999999999999 888654 4444444
Q ss_pred HHhhcCCh-HHHHHHHHHHHH
Q 038112 582 GLCSCSRM-SDAFEFLNDALC 601 (625)
Q Consensus 582 ~~~~~g~~-~~A~~~~~~~~~ 601 (625)
.-.+..+. +...++|..|..
T Consensus 334 l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 44343333 345788888864
No 223
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.25 E-value=0.00049 Score=37.81 Aligned_cols=29 Identities=28% Similarity=0.655 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHCC
Q 038112 575 SYNITLKGLCSCSRMSDAFEFLNDALCRG 603 (625)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (625)
+|+.++.+|.+.|++++|.+++++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555556666666666666666655544
No 224
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.21 E-value=0.021 Score=46.07 Aligned_cols=73 Identities=19% Similarity=0.323 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCCChhhHH
Q 038112 277 VTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLRE-----KNCNADSTTHG 349 (625)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 349 (625)
.+...++..+...|++++|..+.+.+....|.+...|..++.++...|+..+|.++|+.+.. .|+.|+..+-.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 34556777888899999999999999999999999999999999999999999999988753 48888776643
No 225
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.21 E-value=0.006 Score=49.23 Aligned_cols=58 Identities=19% Similarity=0.361 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHH
Q 038112 138 YGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERL 196 (625)
Q Consensus 138 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 196 (625)
...++..+...|+++.|..+.+.+.... |.+...|..++.++...|+...|.+.|+.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3334444445555555555555555542 224445555555555555555555555443
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.16 E-value=0.0048 Score=57.66 Aligned_cols=100 Identities=19% Similarity=0.131 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHH
Q 038112 500 TPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNL----VTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIIS 575 (625)
Q Consensus 500 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 575 (625)
+.+...++.++.+|...|++++|+..|++.++. .|+. .+|.+++.+|...|+.++|+..++++++.+ .| .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 446889999999999999999999999999985 4553 359999999999999999999999999831 22 2
Q ss_pred HHHHHH--HHhhcCChHHHHHHHHHHHHCCCC
Q 038112 576 YNITLK--GLCSCSRMSDAFEFLNDALCRGIL 605 (625)
Q Consensus 576 ~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~ 605 (625)
|..+.. .+....+.++..++++.+.+.|..
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 221111 122223445777788888776643
No 227
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.15 E-value=0.0056 Score=52.87 Aligned_cols=99 Identities=9% Similarity=-0.009 Sum_probs=71.7
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHH
Q 038112 41 FHHILRRLIDPKLVVHVSRILELIEIQKCY--CPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEK 118 (625)
Q Consensus 41 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (625)
.+..+..+.+.|++..|...|...++..|. -.+..++.|++++...|++++|...|..+.+.+|..+.+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA--------- 214 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA--------- 214 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC---------
Confidence 444555666788899999999999988653 234577889999999999999999999887777655433
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112 119 AKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER 164 (625)
Q Consensus 119 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 164 (625)
+..+..|.....+.|+.++|..+|+++++.
T Consensus 215 ----------------pdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 215 ----------------PDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred ----------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344555555666667777777777776665
No 228
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.14 E-value=0.28 Score=47.62 Aligned_cols=134 Identities=12% Similarity=0.133 Sum_probs=80.8
Q ss_pred CchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHH
Q 038112 169 NVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFI 248 (625)
Q Consensus 169 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 248 (625)
+...|..++.--....+.+.+..++..++.. .|.-..-|......-.+.|..+.+.++|++.... ++.+...|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 3444554544433444456666677776654 2222234566666666778888888888877643 335555665555
Q ss_pred HHHH-hcCCHHHHHHHHHHHHHC-CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038112 249 HGLC-KAGNVEGAERVYREMVES-GI-FVDAVTYNAMIDGFCRAGKIKECFELWEVMGRK 305 (625)
Q Consensus 249 ~~~~-~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 305 (625)
..+. ..|+.+.....|+.++.. |. -.+...|...+..-..++++.....+++.+...
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 4433 456777777777777654 21 123455666666667777777777777777765
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.14 E-value=0.0013 Score=46.08 Aligned_cols=61 Identities=28% Similarity=0.433 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHccCChhHHHHHHHHHH
Q 038112 505 MYNILIHGLCSAGKVEDALQLYSNMKKR----NC-VPN-LVTYNTLMDGLFKTGDCDKALEIWNHIL 565 (625)
Q Consensus 505 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (625)
+++.++.+|...|++++|+++|++..+. |- .|+ ..++..++.++...|++++|++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555554432 10 011 3344455555555555555555555544
No 230
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.38 Score=48.65 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=27.8
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 038112 544 LMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDA 599 (625)
Q Consensus 544 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 599 (625)
++..+....+.+.++.+.+..-+. ++..|..++..+.+.+..+.-.+...+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~v 762 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKV 762 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence 444555556666666655544321 5566666666666665444444444433
No 231
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.10 E-value=0.24 Score=46.08 Aligned_cols=76 Identities=16% Similarity=0.076 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHhc---cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 038112 403 SLMNGFIQASKLENAIFLFKEMSRKG---CSPTVVSYNTLINGLCK---VERFGEAYSFVKEMLEKGWKPDMITYSLLIN 476 (625)
Q Consensus 403 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 476 (625)
.++-+|-...+++..+++++.+.... +......--...-++.+ .|+.++|+.++..+......++..++..+++
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34444555555555555555555431 00011111122223333 4555555555555443334445555555544
Q ss_pred HH
Q 038112 477 GL 478 (625)
Q Consensus 477 ~~ 478 (625)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 43
No 232
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.08 E-value=0.21 Score=46.44 Aligned_cols=169 Identities=12% Similarity=0.049 Sum_probs=110.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHhc---cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038112 436 YNTLINGLCKVERFGEAYSFVKEMLEKG---WKPDMITYSLLINGLCQ---SKKIDMALKLCCQFLQKGFTPDVTMYNIL 509 (625)
Q Consensus 436 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 509 (625)
...++-+|....+++..+++++.+.... +......-...+.++.+ .|+.++|+.++..+......+++.++..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3355556888999999999999988742 11123333345556666 89999999999996665567888899888
Q ss_pred HHHHH----c-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChh----HHHHHH---H-HHHHcCCCC-
Q 038112 510 IHGLC----S-----AGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCD----KALEIW---N-HILEERLRP- 571 (625)
Q Consensus 510 ~~~~~----~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~-~~~~~~~~p- 571 (625)
+..|- . ....++|+..|.+..+. .||...--+++..+...|... +..++- . .+.++|...
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 87664 2 23578999999998874 466544444444444444322 222222 1 122333222
Q ss_pred --CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCH
Q 038112 572 --DIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTT 608 (625)
Q Consensus 572 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 608 (625)
+.-.+.+++.++.-.|+.++|.+.+++|.+. .|+.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l--~~~~ 338 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL--KPPA 338 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCcc
Confidence 3344566777888899999999999999864 3444
No 233
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.07 E-value=0.002 Score=45.16 Aligned_cols=64 Identities=23% Similarity=0.281 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHc--CCCC---C-HHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 538 LVTYNTLMDGLFKTGDCDKALEIWNHILEE--RLRP---D-IISYNITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
..+++.++.+|...|++++|+..|+++++. ...+ + ..++..+..+|...|++++|.+++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 457899999999999999999999999862 1222 2 35678888999999999999999999864
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.07 E-value=0.018 Score=56.37 Aligned_cols=97 Identities=14% Similarity=0.144 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHH---ccCChhHHHHHHHhhccCCCCCCCHHHH------HHHHHHhh----CCCChhHHHHHHHHHHHhc
Q 038112 2 VISAKRLLNLLK---AEKNPHTALALFDSATREPGYAHSPHLF------HHILRRLI----DPKLVVHVSRILELIEIQK 68 (625)
Q Consensus 2 ~~~~~~l~~~l~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~------~~l~~~~~----~~~~~~~a~~~~~~~~~~~ 68 (625)
|+-|..+.+++. ..||-+.+++.+..+.+..+. ..+.+- +.++.... .....+.|.+++..+.++.
T Consensus 185 SlLPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i-~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y 263 (468)
T PF10300_consen 185 SLLPPKVLKLLSFVGFSGDRELGLRLLWEASKSENI-RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY 263 (468)
T ss_pred HhCCHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCc-chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC
Confidence 455666665554 668888888888877664433 333222 22222222 2456677888888888774
Q ss_pred CCCCHHHHHHHHHHHHccCCchHHHHHHHHhH
Q 038112 69 CYCPEDVALSVIQAYGKNSMPDKALDVFQRMN 100 (625)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 100 (625)
|...--...-++.+...|+.++|++.|++..
T Consensus 264 -P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 264 -PNSALFLFFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred -CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 3344444456677777888888888888653
No 235
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.42 Score=47.70 Aligned_cols=332 Identities=13% Similarity=0.116 Sum_probs=173.8
Q ss_pred CHHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 038112 4 SAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPK--LVVHVSRILELIEIQKCYCPEDVALSVIQ 81 (625)
Q Consensus 4 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 81 (625)
+-..+.+-|...+.|..|+++-.++ +.+.. ....++...++.+.+.. .-+++.+....=++.. -.+.-.|..+++
T Consensus 439 ~~~~vi~Rl~~r~~Y~vaIQva~~l-~~p~~-~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~ 515 (829)
T KOG2280|consen 439 SEEVVIDRLVDRHLYSVAIQVAKLL-NLPES-QGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIAR 515 (829)
T ss_pred chhhhhHHHHhcchhHHHHHHHHHh-CCccc-cccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHH
Confidence 3345566677778899999888873 33211 22466666676666553 2223333333222221 134556777777
Q ss_pred HHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH---------HhcCChh
Q 038112 82 AYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGL---------VKSGDLL 152 (625)
Q Consensus 82 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~ 152 (625)
-...+|+++-|+.+++.- ...+.....+.+.++++.|+. ++.+.+ .++. ++..++..- ....+..
T Consensus 516 ~Ay~~GR~~LA~kLle~E-~~~~~qV~lLL~m~~~~~AL~---kaies~-d~~L-i~~Vllhlk~~~~~s~l~~~l~~~p 589 (829)
T KOG2280|consen 516 RAYQEGRFELARKLLELE-PRSGEQVPLLLKMKDSSLALK---KAIESG-DTDL-IIQVLLHLKNKLNRSSLFMTLRNQP 589 (829)
T ss_pred HHHhcCcHHHHHHHHhcC-CCccchhHHHhccchHHHHHH---HHHhcC-Cchh-HHHHHHHHHHHHHHHHHHHHHHhch
Confidence 777889999888888754 223333444666677666654 333333 1222 222222111 1112233
Q ss_pred hHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHH-H-HhCCCCCCCcchHHHHHHHHHhcCChhhH-----
Q 038112 153 GALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWER-L-VMETSVYPNVVTYNVMINGLCKCGRFDEC----- 225 (625)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a----- 225 (625)
.|..+|.+..+.. +..+ +-. +..+++-..+...|.. - .......+-..........+.+.....-.
T Consensus 590 ~a~~lY~~~~r~~---~~~~---l~d-~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 590 LALSLYRQFMRHQ---DRAT---LYD-FYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred hhhHHHHHHHHhh---chhh---hhh-hhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 3444444443321 1111 111 1222222222222211 0 01000111222233333444443331111
Q ss_pred -----HHHHHHHH-hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038112 226 -----LEMWDRMK-KNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELW 299 (625)
Q Consensus 226 -----~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 299 (625)
+.+.+.+. +.+..-...+.+-.+.-+...|+-.+|.++-.+.. -||-..|-.-+.+++..+++++-+++-
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 11111111 12223344455666677778888888888877654 357778888888888888888776655
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038112 300 EVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILN 369 (625)
Q Consensus 300 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 369 (625)
+... ++..|.....+|.+.|+.++|.+++.+.... .....+|.+.|++.+|.+.--
T Consensus 739 kskk-----sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 739 KSKK-----SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hccC-----CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHH
Confidence 4432 4667777888899999999998887543322 146677888888888876543
No 236
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.53 Score=47.01 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=75.8
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038112 468 MITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDG 547 (625)
Q Consensus 468 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 547 (625)
..+.+.-+..+...|+..+|.++-.++. -||...|..-+.+++..+++++-+++-+... ++.-|.-...+
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~ 753 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEA 753 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHH
Confidence 3445555666777788888888766653 4677777777788888888877666544433 24456667778
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHH
Q 038112 548 LFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLND 598 (625)
Q Consensus 548 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 598 (625)
|.+.|+.++|.+++-+.-. .. -...+|.+.|++.+|.+..-+
T Consensus 754 c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHH
Confidence 8888888888887765432 11 456677778888777765443
No 237
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.92 E-value=0.021 Score=53.62 Aligned_cols=68 Identities=10% Similarity=-0.075 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHccCCchHHHHHHHHhHHh
Q 038112 34 YAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPE---DVALSVIQAYGKNSMPDKALDVFQRMNEI 102 (625)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 102 (625)
.|.++.++..++.+|...|++++|+..|++++..+|. +. ..++.++.+|...|++++|+..++++.+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3678899999999999999999999999999999754 44 35899999999999999999999998663
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.16 Score=44.66 Aligned_cols=49 Identities=10% Similarity=0.158 Sum_probs=19.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHH
Q 038112 182 KKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRM 232 (625)
Q Consensus 182 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 232 (625)
..|++.+|...|....... +.+......++.+|...|+.+.|..++..+
T Consensus 146 ~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 3344444444444433331 222233333344444444444444444433
No 239
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.83 E-value=0.023 Score=47.26 Aligned_cols=97 Identities=15% Similarity=0.131 Sum_probs=66.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC----------
Q 038112 488 LKLCCQFLQKGFTPDVTMYNILIHGLCS-----AGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTG---------- 552 (625)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------- 552 (625)
...|+.... ...+..+|..++..|.+ .|..+=....+..|.+.|+..|..+|+.|++++=+..
T Consensus 34 ~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 34 EELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred HHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 344444422 24578888888888874 4677777888888999899999999999999876521
Q ss_pred ------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 038112 553 ------DCDKALEIWNHILEERLRPDIISYNITLKGLCSC 586 (625)
Q Consensus 553 ------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 586 (625)
+-+-|++++++|...|+-||.+++..++..+.+.
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 2233566666666666666666666666665443
No 240
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.021 Score=52.28 Aligned_cols=96 Identities=14% Similarity=0.117 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHH
Q 038112 136 YSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMING 215 (625)
Q Consensus 136 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 215 (625)
..+..+..++.+.+++..|+...++.+..+ ++|+.....-..++...|+++.|+..|+++.+.. |.|-.+-+.++.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 456777788889999999999999999885 4488888888999999999999999999998863 3344445555555
Q ss_pred HHhcCChh-hHHHHHHHHHh
Q 038112 216 LCKCGRFD-ECLEMWDRMKK 234 (625)
Q Consensus 216 ~~~~g~~~-~a~~~~~~~~~ 234 (625)
--+..... ...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 55544444 34677777764
No 241
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.74 Score=46.71 Aligned_cols=83 Identities=11% Similarity=0.190 Sum_probs=61.4
Q ss_pred HHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCC
Q 038112 9 LNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSM 88 (625)
Q Consensus 9 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (625)
+.-|..+|++++|...|-+.+. .-..++ ++.-+....+..+...+++.+.+.+.. +.+....|+.+|.+.++
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~---~le~s~----Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIG---FLEPSE----VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHcc---cCChHH----HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcc
Confidence 3456688999999998888662 233333 455566777888888899999988754 66777788999999998
Q ss_pred chHHHHHHHHh
Q 038112 89 PDKALDVFQRM 99 (625)
Q Consensus 89 ~~~A~~~~~~~ 99 (625)
.+.-.+..+..
T Consensus 447 ~~kL~efI~~~ 457 (933)
T KOG2114|consen 447 VEKLTEFISKC 457 (933)
T ss_pred hHHHHHHHhcC
Confidence 88777766655
No 242
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.27 Score=41.43 Aligned_cols=29 Identities=10% Similarity=0.146 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038112 244 YCSFIHGLCKAGNVEGAERVYREMVESGI 272 (625)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 272 (625)
+..+.......+++.+|+++|+++....+
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444556677777777777665543
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.75 E-value=0.39 Score=45.69 Aligned_cols=64 Identities=14% Similarity=0.131 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112 171 VCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKK 234 (625)
Q Consensus 171 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (625)
.+-..++.++-+.|+.++|++.+.++.+..+...+......|+.++...+.+.++..++.+..+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3344566666677777777777777776532222334566677777777777777777777643
No 244
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.75 E-value=0.055 Score=45.17 Aligned_cols=107 Identities=13% Similarity=0.196 Sum_probs=81.8
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHhc-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-----------
Q 038112 453 YSFVKEMLEKGWKPDMITYSLLINGLCQ-----SKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSA----------- 516 (625)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------- 516 (625)
...|+.... -..+..+|..++..+.+ .|..+=....++.|.+.|+.-|..+|+.|+.++-+.
T Consensus 34 ~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 34 EELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred HHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 344554432 24588899999998874 456666777788888999999999999999987542
Q ss_pred -----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 038112 517 -----GKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHI 564 (625)
Q Consensus 517 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (625)
.+-+-|++++++|...|+-||..++..|+..+.+.+. +..-+.+|
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~---p~~K~~rm 161 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH---PMKKYRRM 161 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH---HHHHHHHH
Confidence 2456799999999999999999999999999876554 44444444
No 245
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.72 E-value=0.0044 Score=37.33 Aligned_cols=39 Identities=8% Similarity=-0.080 Sum_probs=19.4
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHH
Q 038112 40 LFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSV 79 (625)
Q Consensus 40 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 79 (625)
++..++.++.+.|++++|+++|+++++..| .+...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P-~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDP-DDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CCHHHHHHh
Confidence 444555555555555555555555555542 344444443
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.71 E-value=0.029 Score=42.01 Aligned_cols=85 Identities=12% Similarity=-0.026 Sum_probs=45.2
Q ss_pred HHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch-----------hhhc
Q 038112 45 LRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI-----------LCRK 113 (625)
Q Consensus 45 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----------~~~~ 113 (625)
+.+++..|+.+.|++.|.+.+..- |..+..|+.-++.+--+|+.++|++-+++.++..+..... |...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 334455555555555555555553 3355555555555555555555555555555433332222 4445
Q ss_pred CChHHHHHHHHHHHHCC
Q 038112 114 RQFEKAKRFLNSLWEKG 130 (625)
Q Consensus 114 ~~~~~A~~~~~~~~~~~ 130 (625)
|+-+.|+.-|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 66666666666655554
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.65 E-value=0.19 Score=49.51 Aligned_cols=162 Identities=14% Similarity=0.121 Sum_probs=97.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCCH-----hhHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 038112 436 YNTLINGLCKVERFGEAYSFVKEMLEKG-WKPDM-----ITYSLLINGLCQ----SKKIDMALKLCCQFLQKGFTPDVTM 505 (625)
Q Consensus 436 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 505 (625)
+..++...+-.|+-+.+++.+....+.+ +.-.. ..|..++..+.. ..+.+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 4455555556677777777776665432 11111 122333332222 34667788888888775 455544
Q ss_pred HH-HHHHHHHcCCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038112 506 YN-ILIHGLCSAGKVEDALQLYSNMKKRN---CVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLK 581 (625)
Q Consensus 506 ~~-~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 581 (625)
|. .-++.+...|++++|++.|++..... .+.....+..++.++.-.+++++|.+.|..+.+.. .-+..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 43 33566777888888888888765321 11234556678888888888888888888888731 113344444433
Q ss_pred -HHhhcCCh-------HHHHHHHHHHH
Q 038112 582 -GLCSCSRM-------SDAFEFLNDAL 600 (625)
Q Consensus 582 -~~~~~g~~-------~~A~~~~~~~~ 600 (625)
++...|+. ++|.+++.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 44456777 77888887764
No 248
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.048 Score=48.31 Aligned_cols=149 Identities=13% Similarity=0.032 Sum_probs=100.6
Q ss_pred HHHccCCchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHC---CCCCCHhHHHHHHHHHHhcCCh
Q 038112 82 AYGKNSMPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEK---GLKPDVYSYGTVINGLVKSGDL 151 (625)
Q Consensus 82 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 151 (625)
.+...|++-+|-..++++++.+|...-+ +.-.|+.+.-...+++++.. ++|-..+....+.-++...|-+
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3446777888888888888887776554 66678888888888888765 2222233333344455678899
Q ss_pred hhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC----cchHHHHHHHHHhcCChhhHHH
Q 038112 152 LGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPN----VVTYNVMINGLCKCGRFDECLE 227 (625)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~ 227 (625)
++|.+.-++..+.+ +.|...-......+...|+..++.++...-... .... ...|-...-.+...+.++.|++
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~--Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD--WRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc--hhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 99998888888774 336667777788888889999888876654332 1121 1223334456777789999999
Q ss_pred HHHHHH
Q 038112 228 MWDRMK 233 (625)
Q Consensus 228 ~~~~~~ 233 (625)
+|++-.
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 997643
No 249
>PRK11906 transcriptional regulator; Provisional
Probab=96.58 E-value=0.14 Score=48.40 Aligned_cols=148 Identities=14% Similarity=0.072 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHHHC-CCCCC-HhhHHHHHHHHhc---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 038112 448 RFGEAYSFVKEMLEK-GWKPD-MITYSLLINGLCQ---------SKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSA 516 (625)
Q Consensus 448 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 516 (625)
..+.|+.+|.+.... ...|+ ...|..+..++.. ..+..+|.++.++..+.+ +.|+.....++.+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 456788899998822 24555 3444444443321 233556788888888876 55888888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhhcCChHHHH
Q 038112 517 GKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI---ISYNITLKGLCSCSRMSDAF 593 (625)
Q Consensus 517 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~ 593 (625)
++++.|...|++....+ +....+|...+..+.-.|+.++|.+.++++++ +.|.. .+....++.|+..+ .++|+
T Consensus 352 ~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhhH
Confidence 89999999999999863 44477888899999999999999999999988 77743 34444455777665 57788
Q ss_pred HHHHHHH
Q 038112 594 EFLNDAL 600 (625)
Q Consensus 594 ~~~~~~~ 600 (625)
+++-+-.
T Consensus 428 ~~~~~~~ 434 (458)
T PRK11906 428 KLYYKET 434 (458)
T ss_pred HHHhhcc
Confidence 8776554
No 250
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.54 E-value=0.0098 Score=35.82 Aligned_cols=40 Identities=15% Similarity=0.107 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 038112 278 TYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILI 317 (625)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 317 (625)
++..+...|.+.|++++|+++|+++.+..|.++.+|..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4556666777777777777777777777666666666554
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.50 E-value=0.11 Score=39.15 Aligned_cols=84 Identities=20% Similarity=0.035 Sum_probs=46.6
Q ss_pred HHHccCCchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhcCCh
Q 038112 82 AYGKNSMPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKPD---VYSYGTVINGLVKSGDL 151 (625)
Q Consensus 82 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 151 (625)
+++..|+.+.|++.|.+.+..-|..+++ +.-+|+.++|+.-+++.++..-+.. ..+|..-...|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 4556666666666666666655555554 4455666666666666655321111 12233333445556666
Q ss_pred hhHHHHHHHHHhCC
Q 038112 152 LGALAVFDEMFERG 165 (625)
Q Consensus 152 ~~a~~~~~~~~~~~ 165 (625)
+.|..=|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666666655
No 252
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.42 E-value=0.63 Score=41.41 Aligned_cols=203 Identities=19% Similarity=0.112 Sum_probs=128.0
Q ss_pred HhHHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHH
Q 038112 135 VYSYGTVINGLVKSGDLLGALAVFDEMFER-GVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMI 213 (625)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 213 (625)
...+......+...+++..+...+...... ........+......+...+++..+...+....... +.+........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 136 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD--PDPDLAEALLA 136 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC--CCcchHHHHHH
Confidence 455566666677777777777777776652 233355566666777777777888888887776643 11112222333
Q ss_pred H-HHHhcCChhhHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 038112 214 N-GLCKCGRFDECLEMWDRMKKNER--EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAG 290 (625)
Q Consensus 214 ~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (625)
. .+...|+++.+...+.+.....+ ......+......+...++.+.+...+..............+..+...+...+
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 3 67778888888888887754221 11223333334445667778888888887776532213566667777777777
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112 291 KIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREK 339 (625)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (625)
+++.+...+.......+.....+..+...+...+..+.+...+......
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888777766554445555555555666677777777777665
No 253
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.41 E-value=0.92 Score=43.16 Aligned_cols=100 Identities=11% Similarity=0.094 Sum_probs=69.8
Q ss_pred CCCHhhH-HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038112 465 KPDMITY-SLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCS--AGKVEDALQLYSNMKKRNCVPNLVTY 541 (625)
Q Consensus 465 ~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~ 541 (625)
.|+..++ +.++..+.+.|-..+|...+..+... ++|+...|..+++.-.. .-+..-+..+|+.+... +..|+..|
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw 533 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLW 533 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHH
Confidence 3444443 45666677788888888888888776 46677777777654321 22367778888888766 33677888
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHH
Q 038112 542 NTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 542 ~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
......-...|..+.+-.++.++.+
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHH
Confidence 7777777788888888887777766
No 254
>PRK11906 transcriptional regulator; Provisional
Probab=96.34 E-value=0.36 Score=45.76 Aligned_cols=149 Identities=13% Similarity=0.048 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHHHhC-CCCCC-hhhHHHHHHHHhc---------cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcc
Q 038112 413 KLENAIFLFKEMSRK-GCSPT-VVSYNTLINGLCK---------VERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQS 481 (625)
Q Consensus 413 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 481 (625)
..+.|..+|.+.... ...|+ ...|..+..++.. .....+|.++.++.++.+ +.|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 457888899998822 22343 3456665554432 223456777888888764 45778888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCChhHHH
Q 038112 482 KKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNL---VTYNTLMDGLFKTGDCDKAL 558 (625)
Q Consensus 482 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~ 558 (625)
++++.|...|++....+ +....+|........-.|+.++|.+.+++..+. .|.. .+....+..|+.. ..+.|+
T Consensus 352 ~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 88999999999999864 335677777788888899999999999998874 4542 2223333355544 567777
Q ss_pred HHHHHHHH
Q 038112 559 EIWNHILE 566 (625)
Q Consensus 559 ~~~~~~~~ 566 (625)
.+|-+-.+
T Consensus 428 ~~~~~~~~ 435 (458)
T PRK11906 428 KLYYKETE 435 (458)
T ss_pred HHHhhccc
Confidence 77654433
No 255
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.28 E-value=0.18 Score=40.24 Aligned_cols=140 Identities=14% Similarity=0.083 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcC
Q 038112 36 HSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPE-DVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKR 114 (625)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (625)
.+...|..-+. +++.+..++|+..|..+.+.|...-+ -..+..+......|+...|...|+.+-.. ...|....
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~r--- 131 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGR--- 131 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhh---
Confidence 34455554443 44667777888888888777654322 23345556667777777777777776321 11111100
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHH
Q 038112 115 QFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWE 194 (625)
Q Consensus 115 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 194 (625)
| .....-...+...|.++......+.+-..+-+.....-..|.-+-.+.|++..|...|.
T Consensus 132 -------------------d-~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~ 191 (221)
T COG4649 132 -------------------D-LARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFV 191 (221)
T ss_pred -------------------H-HHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHH
Confidence 0 00111112234555555555555554443333333444445555556666666666666
Q ss_pred HHHhCC
Q 038112 195 RLVMET 200 (625)
Q Consensus 195 ~~~~~~ 200 (625)
.+....
T Consensus 192 qia~Da 197 (221)
T COG4649 192 QIANDA 197 (221)
T ss_pred HHHccc
Confidence 665543
No 256
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.19 E-value=1 Score=41.56 Aligned_cols=107 Identities=19% Similarity=0.160 Sum_probs=65.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcc
Q 038112 402 NSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQS 481 (625)
Q Consensus 402 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 481 (625)
+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-..+... +-++.-|...+.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 334455566677666666655543 35666777777777777777766654322 11346667777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 038112 482 KKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSN 528 (625)
Q Consensus 482 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 528 (625)
|+..+|..+..++ ++ ..-+..|.+.|++.+|.+.--+
T Consensus 251 ~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 251 GNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777666551 11 2345566677777777665433
No 257
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.17 E-value=0.093 Score=40.42 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 038112 502 DVTMYNILIHGLCSAGKVEDALQLYSNMK 530 (625)
Q Consensus 502 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 530 (625)
|..++..++.++++.|+.+....+++..-
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W 29 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW 29 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence 35667778888888888888877776654
No 258
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.72 Score=39.35 Aligned_cols=209 Identities=13% Similarity=0.099 Sum_probs=104.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 038112 209 YNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR 288 (625)
Q Consensus 209 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (625)
|.....+|...+++++|...+.+..+.. +.+...|. - ...+++|.-+.+++.+. .--...+......|.+
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 4445566777778888877776665321 22222222 1 23345566666665543 1123445556667777
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-----CChhhHHHHHHHHHhcCCHHH
Q 038112 289 AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCN-----ADSTTHGVLINGLCKNGYLNK 363 (625)
Q Consensus 289 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~ 363 (625)
+|.++.|-..+++..+. ...-++++|+++|.+....-.. .-...+....+.+.+...+++
T Consensus 104 ~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred hCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 77777776666665442 3445566666666655432100 011223334445555566655
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCChhhHHHHH
Q 038112 364 AIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKG---CSPTVVSYNTLI 440 (625)
Q Consensus 364 a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~ 440 (625)
|-..+.+... +...... ....-..+...|-.+....++..|.+.++.-.+.+ -+-+..+...|+
T Consensus 169 aa~a~lKe~~-----------~~~~~~~--y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 169 AATAFLKEGV-----------AADKCDA--YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred HHHHHHHhhh-----------HHHHHhh--cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 5544432100 0001111 11112234555556666677778877777643321 122444556666
Q ss_pred HHHhccCCHHHHHHHH
Q 038112 441 NGLCKVERFGEAYSFV 456 (625)
Q Consensus 441 ~~~~~~~~~~~a~~~~ 456 (625)
.+| ..|+.+++..++
T Consensus 236 ~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 236 TAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHh-ccCCHHHHHHHH
Confidence 555 345666555443
No 259
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.08 E-value=1.1 Score=40.75 Aligned_cols=167 Identities=13% Similarity=0.035 Sum_probs=96.8
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHhcCChhhHHHHHHHHHhCC-----CCCChhh
Q 038112 172 CYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNV---VTYNVMINGLCKCGRFDECLEMWDRMKKNE-----REKDSFT 243 (625)
Q Consensus 172 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~ 243 (625)
.|..+.+.+.+..++.+++.+-..-....+..|.. .....+..++...+.++++++.|+...+.. ......+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 45556666666666666666655555444333321 123345566666777888888877765421 1122345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----C--
Q 038112 244 YCSFIHGLCKAGNVEGAERVYREMVES----GIFV-----DAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC----L-- 308 (625)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-- 308 (625)
+..+...|.+..|+++|.-...+..+. ++.. .......+.-++-..|.+..|.+.-++..+... .
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 777777778888888777665554332 2220 012233445556667777777776666543321 1
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 038112 309 NVVSYNILIRGLLENGKVDEAISIWELLRE 338 (625)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (625)
.......+.+.|...|+.+.|+.-|+....
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 444556677788888888888777766543
No 260
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.06 E-value=0.18 Score=47.76 Aligned_cols=61 Identities=13% Similarity=0.179 Sum_probs=28.5
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEI 66 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 66 (625)
.+|+..+.+.|+.++|++.|+..++..+......+...++.+++..+.+.++..++.+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3444555555555555555555444331112233444445555555555555555554433
No 261
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.03 E-value=1.1 Score=40.61 Aligned_cols=130 Identities=15% Similarity=0.160 Sum_probs=79.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCC-CH-----
Q 038112 402 NSLMNGFIQASKLENAIFLFKEMSRKG-----CSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEK--GWKP-DM----- 468 (625)
Q Consensus 402 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~-~~----- 468 (625)
..+..++...+.++++.+.|+...+.. ......++..+...|.+..++++|.-+..+..+. .+.. |.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 345666677777888888887766421 1112346777777888888888887766655432 1111 11
Q ss_pred -hhHHHHHHHHhccCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 038112 469 -ITYSLLINGLCQSKKIDMALKLCCQFLQ----KGFTP-DVTMYNILIHGLCSAGKVEDALQLYSNMKK 531 (625)
Q Consensus 469 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 531 (625)
.....+.-++...|..-.|.+..++..+ .|-.+ .......++..|...|+.+.|+.-|+.+..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 1223344456677777777777776654 33222 133445667788888888888887776654
No 262
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.29 Score=43.67 Aligned_cols=151 Identities=15% Similarity=0.148 Sum_probs=84.3
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHH----HHHHHHHhcCC
Q 038112 181 FKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYC----SFIHGLCKAGN 256 (625)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~ 256 (625)
...|+..+|-..|+++++. +|.|..++...=.++.-.|+.+.-...++++...= .++...|. .+.-++...|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhcc
Confidence 3456667777777777765 46666666666667777777777777776665320 12222221 22233445677
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHhCCCHHHHHHH
Q 038112 257 VEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL----NVVSYNILIRGLLENGKVDEAISI 332 (625)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~ 332 (625)
+++|++.-++..+.+.. |...-......+.-.|++.++.++..+-...... -..-|-...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 77777777766665422 5555555666666667777776666554332211 111122233344455666666666
Q ss_pred HHH
Q 038112 333 WEL 335 (625)
Q Consensus 333 ~~~ 335 (625)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 654
No 263
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.86 E-value=0.73 Score=36.95 Aligned_cols=122 Identities=16% Similarity=0.115 Sum_probs=67.2
Q ss_pred hhhcCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHH-----HHHHHhc
Q 038112 110 LCRKRQFEKAKRFLNSLWEKGLKPDV-YSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNIL-----IDGFFKK 183 (625)
Q Consensus 110 ~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~ 183 (625)
+.+.+..++|+.-|..+.+.|...-+ .............|+...|...|+++-.-...| .....+ .-.+...
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P--~~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP--QIGRDLARLRAAYLLVDN 145 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc--chhhHHHHHHHHHHHhcc
Confidence 44566667777777777666533222 122333344556777777777777766543222 222222 2234456
Q ss_pred CChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112 184 GDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKK 234 (625)
Q Consensus 184 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (625)
|.++......+.+...+ .+.-...-..|.-+-.+.|++..|.+.|..+..
T Consensus 146 gsy~dV~srvepLa~d~-n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 146 GSYDDVSSRVEPLAGDG-NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccHHHHHHHhhhccCCC-ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 77776666666554433 223333445566666677777777777776654
No 264
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.82 E-value=1.3 Score=39.41 Aligned_cols=199 Identities=22% Similarity=0.150 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH-
Q 038112 399 YTCNSLMNGFIQASKLENAIFLFKEMSRK-GCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLIN- 476 (625)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 476 (625)
.........+...+.+..+...+...... ........+......+...+.+..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444445555555666555555555431 112233344444555555555666666666665532221 111112222
Q ss_pred HHhccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCC
Q 038112 477 GLCQSKKIDMALKLCCQFLQKGF--TPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVP-NLVTYNTLMDGLFKTGD 553 (625)
Q Consensus 477 ~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 553 (625)
.+...|+++.|...+.+...... ......+......+...++++.+...+...... .+. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL-NPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-CcccchHHHHHhhHHHHHccc
Confidence 45666667777766666644211 012333333334455666777777777776664 223 35566666666777777
Q ss_pred hhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 554 CDKALEIWNHILEERLRPD-IISYNITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 554 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
++.|...+..... ..|+ ...+..+...+...+..+++...+.+...
T Consensus 218 ~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777766 4443 33444444444455666777766666654
No 265
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.70 E-value=0.8 Score=44.48 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038112 398 AYTCNSLMNGFIQASKLENAIFLFKE 423 (625)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 423 (625)
...|..|.....+.|+++-|.+.|.+
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 33444444444444444444444443
No 266
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.68 E-value=1.6 Score=39.70 Aligned_cols=101 Identities=10% Similarity=-0.013 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 038112 243 TYCSFIHGLCKAGNVE---GAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRG 319 (625)
Q Consensus 243 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 319 (625)
++..++.+|...+..+ +|..+++.+...... .+.++..-+..+.+.++.+.+.+.+..|..........+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 3445556666555533 344455555433211 234444445555556777777777777766544233333333333
Q ss_pred H---HhCCCHHHHHHHHHHHHHcCCCCCh
Q 038112 320 L---LENGKVDEAISIWELLREKNCNADS 345 (625)
Q Consensus 320 ~---~~~~~~~~a~~~~~~~~~~~~~~~~ 345 (625)
+ .. .....+...+..+....+.|..
T Consensus 165 i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 3 22 2234555555555544444443
No 267
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.63 E-value=0.011 Score=33.11 Aligned_cols=32 Identities=3% Similarity=0.093 Sum_probs=18.3
Q ss_pred HHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHH
Q 038112 25 FDSATREPGYAHSPHLFHHILRRLIDPKLVVHVS 58 (625)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 58 (625)
|+.+++.+ |.++.+|..++.+|...|++++|+
T Consensus 2 y~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN--PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34445545 566666666666666666665553
No 268
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.63 E-value=0.88 Score=36.25 Aligned_cols=124 Identities=10% Similarity=0.142 Sum_probs=56.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 038112 473 LLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTG 552 (625)
Q Consensus 473 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 552 (625)
.++..+...+.+.....+++.+...+ ..+....+.++..|++.+ ..+....++. . .+.......++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 34444444455555555555555544 234455555555555432 2333333331 0 12222334555555555
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038112 553 DCDKALEIWNHILEERLRPDIISYNITLKGLCSC-SRMSDAFEFLNDALCRGILPTTITWHILVRAVM 619 (625)
Q Consensus 553 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (625)
-++++.-++.++-. +...+..+... ++++.|.+++.+. .++..|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 55555555554422 11122222222 5556666655542 24456665555543
No 269
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.61 E-value=0.099 Score=42.20 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=75.7
Q ss_pred hhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCC----------ChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC
Q 038112 18 PHTALALFDSATREPGYAHSPHLFHHILRRLIDPK----------LVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS 87 (625)
Q Consensus 18 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (625)
|+.|.+.++.....+ |.++..+..=+.++.... -+++|..-|+.++..+| ...+.+..++.+|...+
T Consensus 7 FE~ark~aea~y~~n--P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P-~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN--PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINP-NKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHH
Confidence 466777777766667 888988877776665432 24556666777777764 47788888888887655
Q ss_pred C----chHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112 88 M----PDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFE 163 (625)
Q Consensus 88 ~----~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 163 (625)
. ..+|... |++|...|+++...+ |+...|+.-+.... .|-++..++.+
T Consensus 84 ~l~~d~~~A~~~--------------------F~kA~~~FqkAv~~~--P~ne~Y~ksLe~~~------kap~lh~e~~~ 135 (186)
T PF06552_consen 84 FLTPDTAEAEEY--------------------FEKATEYFQKAVDED--PNNELYRKSLEMAA------KAPELHMEIHK 135 (186)
T ss_dssp HH---HHHHHHH--------------------HHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHH
T ss_pred hhcCChHHHHHH--------------------HHHHHHHHHHHHhcC--CCcHHHHHHHHHHH------hhHHHHHHHHH
Confidence 3 2333333 456778888888765 88888888777653 46667777766
Q ss_pred CC
Q 038112 164 RG 165 (625)
Q Consensus 164 ~~ 165 (625)
.+
T Consensus 136 ~~ 137 (186)
T PF06552_consen 136 QG 137 (186)
T ss_dssp SS
T ss_pred HH
Confidence 54
No 270
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.36 E-value=1.6 Score=42.47 Aligned_cols=101 Identities=18% Similarity=0.130 Sum_probs=44.2
Q ss_pred HHHhcCChhhHHHHHH--HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 038112 215 GLCKCGRFDECLEMWD--RMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKI 292 (625)
Q Consensus 215 ~~~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (625)
...-.++++++.++.+ ++. .. ........++..+.+.|..+.|+++-. |+. .-.....+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll-~~--i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLL-PN--IPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTG-GG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhc-cc--CChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCH
Confidence 3444556666555554 111 11 113335555555555666665555432 221 123344555666
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 038112 293 KECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWEL 335 (625)
Q Consensus 293 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 335 (625)
+.|.++.+... +...|..|.......|+++-|.+.|.+
T Consensus 335 ~~A~~~a~~~~-----~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 335 DIALEIAKELD-----DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHHHHCCCCS-----THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 65555443321 445566666666666666666555544
No 271
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.30 E-value=0.26 Score=43.71 Aligned_cols=75 Identities=12% Similarity=0.234 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH-----cCCCCCHHHHH
Q 038112 503 VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE-----ERLRPDIISYN 577 (625)
Q Consensus 503 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 577 (625)
..++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3445556666666666666666666666652 44566666666666666666666666666544 35555544443
Q ss_pred H
Q 038112 578 I 578 (625)
Q Consensus 578 ~ 578 (625)
.
T Consensus 232 ~ 232 (280)
T COG3629 232 L 232 (280)
T ss_pred H
Confidence 3
No 272
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.30 E-value=1.5 Score=36.78 Aligned_cols=181 Identities=12% Similarity=0.018 Sum_probs=95.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHH
Q 038112 112 RKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKE 191 (625)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 191 (625)
..|-+.-|+--|.+.+... |.-+.+||.+.--+...|+++.|.+.|+...+.++.-+-...+. .-.+.--|++.-|.+
T Consensus 77 SlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR-gi~~YY~gR~~LAq~ 154 (297)
T COG4785 77 SLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR-GIALYYGGRYKLAQD 154 (297)
T ss_pred hhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc-ceeeeecCchHhhHH
Confidence 4455666666677766654 34466788888888889999999999999888755433222222 223345688888887
Q ss_pred HHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHH-HHHHhCCCCCChhhHHHHH-HHHHhcCCHHHHHHHHHHHHH
Q 038112 192 IWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW-DRMKKNEREKDSFTYCSFI-HGLCKAGNVEGAERVYREMVE 269 (625)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~ 269 (625)
-+.+.-+.+...|-...|..+.. +.-++.+|..-+ ++.. ..|..-|...+ ..|...=..+ .+++++..
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a 224 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISEE---TLMERLKA 224 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccHH---HHHHHHHh
Confidence 77776665433333333433332 234555555433 3333 23434443333 2222221112 22222222
Q ss_pred CCCC------cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038112 270 SGIF------VDAVTYNAMIDGFCRAGKIKECFELWEVMGR 304 (625)
Q Consensus 270 ~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (625)
..-. .-+.+|..+...+...|+.++|..+|+-...
T Consensus 225 ~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 225 DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 1100 0124455555556666666666666655543
No 273
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.16 E-value=0.31 Score=37.62 Aligned_cols=98 Identities=14% Similarity=0.153 Sum_probs=58.0
Q ss_pred CHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHH
Q 038112 134 DVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMI 213 (625)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 213 (625)
|..++..++.++++.|+.+....+++..-.-++..... .+. .....+..|+.....+++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~-----------~~~----------~~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKK-----------EGD----------YPPSSPLYPTSRLLIAIV 59 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccc-----------cCc----------cCCCCCCCCCHHHHHHHH
Confidence 35667788888888888888888877654322111000 000 222333566666677777
Q ss_pred HHHHhcCChhhHHHHHHHHHh-CCCCCChhhHHHHHHHHH
Q 038112 214 NGLCKCGRFDECLEMWDRMKK-NEREKDSFTYCSFIHGLC 252 (625)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 252 (625)
.+|+.+|++..|+++++.+.+ -+++.+..+|..|+.-..
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 777777777777777766654 234445566666665443
No 274
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.15 E-value=0.05 Score=30.37 Aligned_cols=31 Identities=42% Similarity=0.754 Sum_probs=18.2
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC
Q 038112 540 TYNTLMDGLFKTGDCDKALEIWNHILEERLRPD 572 (625)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 572 (625)
+|..++.+|...|++++|+..|+++++ +.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 455666666666666666666666666 4443
No 275
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.14 E-value=0.066 Score=47.60 Aligned_cols=90 Identities=11% Similarity=-0.059 Sum_probs=48.7
Q ss_pred HHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCC
Q 038112 9 LNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSM 88 (625)
Q Consensus 9 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (625)
++-+.+||.|++|+.-|..++... |+++..+...+.+|++..++..|+.-...++..+ ..-...|..-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 445556666666666666666555 6666666666666666666666666666555543 1122233333333344444
Q ss_pred chHHHHHHHHhHH
Q 038112 89 PDKALDVFQRMNE 101 (625)
Q Consensus 89 ~~~A~~~~~~~~~ 101 (625)
.++|.+-++.++.
T Consensus 181 ~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 181 NMEAKKDCETVLA 193 (536)
T ss_pred HHHHHHhHHHHHh
Confidence 4444444444433
No 276
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.86 E-value=0.067 Score=29.80 Aligned_cols=27 Identities=22% Similarity=0.505 Sum_probs=14.9
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 540 TYNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
.+..++.++...|++++|++.|+++++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555556666666666555555
No 277
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.80 E-value=3.1 Score=37.89 Aligned_cols=129 Identities=15% Similarity=0.138 Sum_probs=65.4
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCChhh-------HHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCchHHHHHHHHH---Hh
Q 038112 322 ENGKVDEAISIWELLREKNCNADSTT-------HGVLINGLCKNG-YLNKAIQILNEVEEGGEGRLADAASLVNR---MD 390 (625)
Q Consensus 322 ~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~a~~~~~~---~~ 390 (625)
+.|+.+.|..++.+........++.. +..++......+ +++.|..++++. .++++. +.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a-----------~~~l~~~~~~~ 73 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRA-----------YDILEKPGKMD 73 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH-----------HHHHHhhhhcc
Confidence 45556666655555544321112222 222233344555 888888888743 333322 11
Q ss_pred hCCCC---ccHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 038112 391 KHGCK---LNAYTCNSLMNGFIQASKLE---NAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEK 462 (625)
Q Consensus 391 ~~~~~---~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 462 (625)
..+.. .-..+...++.+|...+..+ +|..+++.+...... .+..+..-+..+.+.++.+++.+.+.+|+..
T Consensus 74 ~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 74 KLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 11111 12234566667777666544 444555555443221 2334444555555577777777777777764
No 278
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.79 E-value=1.6 Score=34.68 Aligned_cols=40 Identities=8% Similarity=0.042 Sum_probs=16.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 038112 247 FIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFC 287 (625)
Q Consensus 247 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 287 (625)
++..+...+........++.+...+. .++...+.++..|+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~ 52 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHH
Confidence 33444444444444444444444332 23334444444444
No 279
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.79 E-value=0.051 Score=30.34 Aligned_cols=32 Identities=28% Similarity=0.276 Sum_probs=23.4
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHH
Q 038112 299 WEVMGRKGCLNVVSYNILIRGLLENGKVDEAI 330 (625)
Q Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 330 (625)
|++..+..|.+..+|+.+...+...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45566667777778888888888777777765
No 280
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.75 E-value=0.14 Score=41.80 Aligned_cols=90 Identities=16% Similarity=0.120 Sum_probs=64.5
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHccCCchHHHHHHHHhHHh------hCCCcc
Q 038112 39 HLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPED----VALSVIQAYGKNSMPDKALDVFQRMNEI------FGCEAG 108 (625)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~ 108 (625)
.+...++..+...|++++|+..++..+... .+.. +-..|++.....|.+++|...++..... .....+
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t--~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGD 167 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQT--KDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGD 167 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccc--hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhh
Confidence 334456677888899999999999888642 2222 3345778888899999999988876331 112234
Q ss_pred hhhhcCChHHHHHHHHHHHHCC
Q 038112 109 ILCRKRQFEKAKRFLNSLWEKG 130 (625)
Q Consensus 109 ~~~~~~~~~~A~~~~~~~~~~~ 130 (625)
++...|+-++|+.-|++.+..+
T Consensus 168 ill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 168 ILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHcCchHHHHHHHHHHHHcc
Confidence 4888899999999999988875
No 281
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.71 E-value=1 Score=37.08 Aligned_cols=97 Identities=20% Similarity=0.118 Sum_probs=67.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038112 474 LINGLCQSKKIDMALKLCCQFLQKGFTPD-----VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGL 548 (625)
Q Consensus 474 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (625)
-..-+.+.|++++|..-|..+++.- ++. ...|..-+.++.+.+.++.|+.-..+.++.+ +.....+..-+.+|
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeay 178 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAY 178 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHH
Confidence 3556677888888888888888752 222 2345555567778888888888888887753 22344555556778
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCHH
Q 038112 549 FKTGDCDKALEIWNHILEERLRPDII 574 (625)
Q Consensus 549 ~~~g~~~~A~~~~~~~~~~~~~p~~~ 574 (625)
.+...+++|+.-|+++++ ..|...
T Consensus 179 ek~ek~eealeDyKki~E--~dPs~~ 202 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILE--SDPSRR 202 (271)
T ss_pred HhhhhHHHHHHHHHHHHH--hCcchH
Confidence 888888888888888888 566543
No 282
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.65 E-value=7.7 Score=41.71 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=27.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 510 IHGLCSAGKVEDALQLYSNMKKRNCVPNLV--TYNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 510 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
+.+|..+|+|.+|..+..++... .+.. +-..|+.-+...++.-+|-++..+...
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 34555566666666655554421 1211 124455556666666666666555543
No 283
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.60 E-value=6.5 Score=40.66 Aligned_cols=326 Identities=9% Similarity=0.013 Sum_probs=152.3
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHhcCCH
Q 038112 214 NGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDA-VTYNAMIDGFCRAGKI 292 (625)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 292 (625)
.-..+.|++..+.++...+..... ..-..|..+... .....+++....++ +..-.|-. ..-......+.+.+++
T Consensus 41 ~~a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~-l~~~~~~ev~~Fl~---~~~~~P~~~~Lr~~~l~~La~~~~w 115 (644)
T PRK11619 41 KQAWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQD-LMNQPAVQVTNFIR---ANPTLPPARSLQSRFVNELARREDW 115 (644)
T ss_pred HHHHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhc-cccCCHHHHHHHHH---HCCCCchHHHHHHHHHHHHHHccCH
Confidence 345567778877777766642211 111112221111 11223443333333 22112222 2223334445566666
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112 293 KECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVE 372 (625)
Q Consensus 293 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 372 (625)
...+.++ ...|.+.........+....|+.++|....+.+-..|.. .+.....++..+.+.|.+....-.-+-..
T Consensus 116 ~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R~~~ 190 (644)
T PRK11619 116 RGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAYLERIRL 190 (644)
T ss_pred HHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 6665522 122446666666777777888877777666666555433 45566677777766665444332111111
Q ss_pred hcCCCchHHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh--ccCCH
Q 038112 373 EGGEGRLADAASLVNRMDKHGCKLN-AYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLC--KVERF 449 (625)
Q Consensus 373 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~ 449 (625)
....++...+..+...+ +++ ......++..+. +...+...+.. +.++...-..++.++. ...+.
T Consensus 191 al~~~~~~lA~~l~~~l-----~~~~~~~a~a~~al~~---~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~ 257 (644)
T PRK11619 191 AMKAGNTGLVTYLAKQL-----PADYQTIASALIKLQN---DPNTVETFART-----TGPTDFTRQMAAVAFASVARQDA 257 (644)
T ss_pred HHHCCCHHHHHHHHHhc-----ChhHHHHHHHHHHHHH---CHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCH
Confidence 11123333333332222 111 111112222111 12222221111 1122211111111221 23456
Q ss_pred HHHHHHHHHHHHCC-CCCCH--hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 038112 450 GEAYSFVKEMLEKG-WKPDM--ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLY 526 (625)
Q Consensus 450 ~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 526 (625)
+.|..++....... +.+.. .....+.......+..+++...++...... .+......-+......++++.+...+
T Consensus 258 ~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i 335 (644)
T PRK11619 258 ENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWL 335 (644)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHH
Confidence 77777777764432 22221 122333333333322456666666544321 23444444455555788888888777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 038112 527 SNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHIL 565 (625)
Q Consensus 527 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (625)
..|... ......-..-+++++...|+.++|..+|+++.
T Consensus 336 ~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 336 ARLPME-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777553 23345556677788777888888888888874
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.55 E-value=0.087 Score=29.90 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=14.8
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHH
Q 038112 541 YNTLMDGLFKTGDCDKALEIWNHIL 565 (625)
Q Consensus 541 ~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (625)
+..|+..|.+.|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666644
No 285
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.54 E-value=1.6 Score=33.32 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 038112 503 VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERL 569 (625)
Q Consensus 503 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 569 (625)
.......+..+...|+-++-.+++..+.+. -.+++.....++.+|.+.|+..++.++++++.++|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 444455556666777777777777776653 356677777777777777777777777777777664
No 286
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.39 E-value=6.3 Score=42.28 Aligned_cols=271 Identities=13% Similarity=0.093 Sum_probs=131.1
Q ss_pred HHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHH
Q 038112 20 TALALFDSATREPGYAHSPHLFHHILRRLIDPK--LVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQ 97 (625)
Q Consensus 20 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 97 (625)
......+.++... +++ .-...++.++.+.+ ..+.+++......... ....+-..+=.++. .-.+-.+|+
T Consensus 775 ~vc~~vr~~l~~~--~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~--~~~~ad~al~hll~----Lvdvn~lfn 845 (1265)
T KOG1920|consen 775 SVCDAVRNALERR--APD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQ--VAVSADEALKHLLF----LVDVNELFN 845 (1265)
T ss_pred HHHHHHHHHHhhc--Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcc--cchhHHHHHHHHHh----hccHHHHHH
Confidence 3344444444433 333 44455666776665 5666666555555411 11111111111111 111223333
Q ss_pred HhHHhhCCCcch---hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhH
Q 038112 98 RMNEIFGCEAGI---LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYN 174 (625)
Q Consensus 98 ~~~~~~~~~~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 174 (625)
.++..+...... ...+.|+.+-+.+++++... +++..-|. |.. ..++++.|+.-+..+- ...|.
T Consensus 846 ~ALgtYDl~Lal~VAq~SqkDPkEyLP~L~el~~m--~~~~rkF~--ID~--~L~ry~~AL~hLs~~~-------~~~~~ 912 (1265)
T KOG1920|consen 846 SALGTYDLDLALLVAQKSQKDPKEYLPFLNELKKM--ETLLRKFK--IDD--YLKRYEDALSHLSECG-------ETYFP 912 (1265)
T ss_pred hhhcccchHHHHHHHHHhccChHHHHHHHHHHhhc--hhhhhhee--HHH--HHHHHHHHHHHHHHcC-------ccccH
Confidence 332222211111 23466777777777776632 22222221 111 2355666655554432 22344
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 038112 175 ILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKA 254 (625)
Q Consensus 175 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 254 (625)
...+.-.+.|.+++|..++..-.+ .-...|......+...+.+++|.-.|+..-+ ....+.+|...
T Consensus 913 e~~n~I~kh~Ly~~aL~ly~~~~e-----~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~ 978 (1265)
T KOG1920|consen 913 ECKNYIKKHGLYDEALALYKPDSE-----KQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKEC 978 (1265)
T ss_pred HHHHHHHhcccchhhhheeccCHH-----HHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHh
Confidence 444455566777777766432111 1122344445555566777777766665431 12245667777
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 038112 255 GNVEGAERVYREMVESGIFVDAV--TYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISI 332 (625)
Q Consensus 255 ~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 332 (625)
|+|.+|+.+..++... .+.. +-..|+.-+...+++-+|-++..+.... ...+ +..+++...+++|+++
T Consensus 979 ~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~~a----v~ll~ka~~~~eAlrv 1048 (1265)
T KOG1920|consen 979 GDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PEEA----VALLCKAKEWEEALRV 1048 (1265)
T ss_pred ccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HHHH----HHHHhhHhHHHHHHHH
Confidence 8888888777766432 1211 2245666667777777777777665543 2222 3334444456666665
Q ss_pred HHHH
Q 038112 333 WELL 336 (625)
Q Consensus 333 ~~~~ 336 (625)
....
T Consensus 1049 a~~~ 1052 (1265)
T KOG1920|consen 1049 ASKA 1052 (1265)
T ss_pred HHhc
Confidence 5443
No 287
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.38 E-value=4.8 Score=38.27 Aligned_cols=113 Identities=10% Similarity=-0.030 Sum_probs=62.5
Q ss_pred cCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHH
Q 038112 15 EKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALD 94 (625)
Q Consensus 15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 94 (625)
.|+...|-+-...+++.. |.+|.............|.|+++...+..+.+.- .....+...+++...+.|++++|..
T Consensus 302 ~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~-~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII-GTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh-cCCchHHHHHHHhhhchhhHHHHHH
Confidence 456655555555455444 5555555555555566677777776666655542 2334455566666667777777777
Q ss_pred HHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCC
Q 038112 95 VFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKG 130 (625)
Q Consensus 95 ~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~ 130 (625)
.-+.++...-..+.+ ....|-++++.-.+.++...+
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 666665433222322 223445556666666555444
No 288
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.29 E-value=7.8 Score=40.29 Aligned_cols=224 Identities=10% Similarity=-0.005 Sum_probs=103.5
Q ss_pred HHHHHHHccCCchHHHHHHHHhHHhhCCCcch----------------hhhcCChHHHHHHHHHHHHCC----CCCCHhH
Q 038112 78 SVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI----------------LCRKRQFEKAKRFLNSLWEKG----LKPDVYS 137 (625)
Q Consensus 78 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----------------~~~~~~~~~A~~~~~~~~~~~----~~~~~~~ 137 (625)
.-+-......++.+|..+..++....+..... ....|+++.|.++.+..+..- ..+....
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~ 499 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVA 499 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence 34445566777888877777775543331000 445677777777777766542 1123444
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHH-----HHHHHhcCChhHHH--HHHHHHHhCCC--CCCC---
Q 038112 138 YGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNIL-----IDGFFKKGDYMRAK--EIWERLVMETS--VYPN--- 205 (625)
Q Consensus 138 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~g~~~~a~--~~~~~~~~~~~--~~~~--- 205 (625)
+..+..+..-.|+++.|..+..+..+..-..++..+... ...+..+|+...+. ..|........ .+..
T Consensus 500 ~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~ 579 (894)
T COG2909 500 LSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFL 579 (894)
T ss_pred hhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhH
Confidence 555556666677777777777666554222233322222 23345566332222 22222222110 0011
Q ss_pred cchHHHHHHHHHh-cCChhhHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CcCHHH
Q 038112 206 VVTYNVMINGLCK-CGRFDECLEMWDRMKKNEREKDSFT--YCSFIHGLCKAGNVEGAERVYREMVESGI----FVDAVT 278 (625)
Q Consensus 206 ~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~ 278 (625)
......+..++.+ .+...++..-++......+.|-... +..++......|+.++|...+.++..... .++..+
T Consensus 580 ~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a 659 (894)
T COG2909 580 VRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLA 659 (894)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence 1122223333333 1111222222222222222222222 22566677777888888777777654321 122222
Q ss_pred HHHH--HHHHHhcCCHHHHHHHHHH
Q 038112 279 YNAM--IDGFCRAGKIKECFELWEV 301 (625)
Q Consensus 279 ~~~l--~~~~~~~~~~~~a~~~~~~ 301 (625)
.... +......|+.+.+.....+
T Consensus 660 ~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 660 AAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhhHHHhcccCCHHHHHHHHHh
Confidence 1112 2223455777666666555
No 289
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.27 E-value=0.8 Score=38.07 Aligned_cols=97 Identities=18% Similarity=0.175 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHH--H
Q 038112 504 TMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN--LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYN--I 578 (625)
Q Consensus 504 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~--~ 578 (625)
..+..++..|.+.|+.+.|.+.|.++.+....+. ...+..+++.....|++..+...+.++...--.+ |...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4566777778888888888888888776533333 4455677777777888888877777766521111 122111 1
Q ss_pred HHH--HHhhcCChHHHHHHHHHHH
Q 038112 579 TLK--GLCSCSRMSDAFEFLNDAL 600 (625)
Q Consensus 579 l~~--~~~~~g~~~~A~~~~~~~~ 600 (625)
+.. .+...+++.+|.+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 222 3445688888887777664
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.17 E-value=1.6 Score=34.89 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=19.9
Q ss_pred HccCCchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHH
Q 038112 84 GKNSMPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWE 128 (625)
Q Consensus 84 ~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~ 128 (625)
.+.++.+++..+++-+.-..|..+.+ +..+|+|.+|+.+|+.+..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 34445555555555443333333333 3344444444444444433
No 291
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.14 E-value=0.15 Score=28.33 Aligned_cols=29 Identities=3% Similarity=-0.197 Sum_probs=13.8
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHhc
Q 038112 40 LFHHILRRLIDPKLVVHVSRILELIEIQK 68 (625)
Q Consensus 40 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 68 (625)
++..++.++...|++++|.+.|+++++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 34444555555555555555555555443
No 292
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.09 E-value=0.76 Score=40.90 Aligned_cols=79 Identities=14% Similarity=0.193 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCCChhhHHH
Q 038112 276 AVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLRE-----KNCNADSTTHGV 350 (625)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 350 (625)
..++..++..+...|+++.+.+.++.+....|.+...|..++.+|...|+...|+..|+.+.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345666778888889999999999999999888999999999999999999999998888765 477777666554
Q ss_pred HHHH
Q 038112 351 LING 354 (625)
Q Consensus 351 l~~~ 354 (625)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
No 293
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.04 E-value=1.7 Score=35.84 Aligned_cols=93 Identities=17% Similarity=0.129 Sum_probs=63.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhC
Q 038112 248 IHGLCKAGNVEGAERVYREMVESGIFVD----AVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLEN 323 (625)
Q Consensus 248 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (625)
..-+...|++++|..-|...+...+... ...|..-..++.+.+.++.|++-.......+|....+...-+.+|-+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 3456677888888888888777633222 223444455666777777777777777777777666666667777777
Q ss_pred CCHHHHHHHHHHHHHcC
Q 038112 324 GKVDEAISIWELLREKN 340 (625)
Q Consensus 324 ~~~~~a~~~~~~~~~~~ 340 (625)
..+++|+.-|.++.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 77777777777777763
No 294
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.98 E-value=16 Score=42.76 Aligned_cols=152 Identities=11% Similarity=0.102 Sum_probs=100.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 038112 211 VMINGLCKCGRFDECLEMWDRMKKNER--EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR 288 (625)
Q Consensus 211 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (625)
.+..+-.+.+.+.+|+-.+++-..... ......+..+...|...++++...-+...... +.. +..-+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s-l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS-LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc-HHHHHHHHHh
Confidence 455677788999999999988421111 11222344445589999999888777664111 222 2333445677
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHH-HHHHHHhcCCHHHHHHH
Q 038112 289 AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGV-LINGLCKNGYLNKAIQI 367 (625)
Q Consensus 289 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~ 367 (625)
.|++..|...|+.+.+.+++....++.++......|.++..+-..+...... .+....++. -..+-.+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 8999999999999999999988889988888888888888887666655542 223333333 23444677777766665
Q ss_pred HH
Q 038112 368 LN 369 (625)
Q Consensus 368 ~~ 369 (625)
+.
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 43
No 295
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.96 E-value=16 Score=42.75 Aligned_cols=310 Identities=13% Similarity=0.050 Sum_probs=171.3
Q ss_pred HHHHHhhCCCChhHHHHHHHHH----HHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCC---CcchhhhcCC
Q 038112 43 HILRRLIDPKLVVHVSRILELI----EIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGC---EAGILCRKRQ 115 (625)
Q Consensus 43 ~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~ 115 (625)
.++.+-.+.+.+..|...+++- .+.+ .....+..+-..|+..+++|....+...-.. .++ ........|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-~~sl~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA-DPSLYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-CccHHHHHHHHHhhcc
Confidence 5666777889999999999983 2222 1233445555599999999999988874211 111 1122667899
Q ss_pred hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHH-HHHHHhcCChhHHHHHHH
Q 038112 116 FEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNIL-IDGFFKKGDYMRAKEIWE 194 (625)
Q Consensus 116 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~ 194 (625)
+..|...|+++.+.+ ++....++.++......+.++..+...+-..... .+....++.+ ..+.-+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999999987 4557778888888888888888888776665552 2233333332 333456677776665443
Q ss_pred HHHhCCCCCCCcchHHHH--HHHHHhcCChh--hHHHHHHHHHhCCCCC---------ChhhHHHHHHHHHhcCCHHHHH
Q 038112 195 RLVMETSVYPNVVTYNVM--INGLCKCGRFD--ECLEMWDRMKKNEREK---------DSFTYCSFIHGLCKAGNVEGAE 261 (625)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~--~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~ 261 (625)
. .+...|... +....+...-+ .-.+.++.+.+.-+.| -...|..++..+.-. +-.
T Consensus 1543 ---~-----~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----el~ 1610 (2382)
T KOG0890|consen 1543 ---D-----RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----ELE 1610 (2382)
T ss_pred ---c-----ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----HHH
Confidence 1 233344333 33333332222 1122333332211110 011222222221111 111
Q ss_pred HHHHHHHHCCCCc------CHHHHHHHHHHHHhcCCHHHHHHHHHH----HHhc---CCCcHHHHHHHHHHHHhCCCHHH
Q 038112 262 RVYREMVESGIFV------DAVTYNAMIDGFCRAGKIKECFELWEV----MGRK---GCLNVVSYNILIRGLLENGKVDE 328 (625)
Q Consensus 262 ~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~---~~~~~~~~~~l~~~~~~~~~~~~ 328 (625)
...+... +..+ +..-|...+..-....+..+-+--+++ .... +..-..+|...++...+.|+++.
T Consensus 1611 ~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1611 NSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred HHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 1111111 1111 122232222221111112221111111 1111 22367889999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038112 329 AISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEG 374 (625)
Q Consensus 329 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 374 (625)
|...+-...+.+ -+..+...+......|+-..|..++++..+.
T Consensus 1689 A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1689 AQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 988776666654 3445556677888999999999999876644
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.96 E-value=0.15 Score=28.35 Aligned_cols=29 Identities=0% Similarity=-0.196 Sum_probs=15.4
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHhc
Q 038112 40 LFHHILRRLIDPKLVVHVSRILELIEIQK 68 (625)
Q Consensus 40 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 68 (625)
+|..++.++...|++++|+..|+++++.+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 44555555555555555555555555544
No 297
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.93 E-value=0.097 Score=28.84 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=16.8
Q ss_pred HHHHHHHHHccCCchHHHHHHHHhHHhhC
Q 038112 76 ALSVIQAYGKNSMPDKALDVFQRMNEIFG 104 (625)
Q Consensus 76 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 104 (625)
+..++.++.+.|++++|...|+++...+|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34555555566666666666666655554
No 298
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.78 E-value=0.55 Score=38.13 Aligned_cols=60 Identities=22% Similarity=0.226 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccC-----------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038112 520 EDALQLYSNMKKRNCVPN-LVTYNTLMDGLFKTG-----------DCDKALEIWNHILEERLRPDIISYNITLKGL 583 (625)
Q Consensus 520 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 583 (625)
++|+.-|++++. +.|+ ..++..++.++...+ .+++|...|+++.+ .+|+...|+.-+...
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 344444444444 3344 456666666655432 24555556666666 677777777666654
No 299
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.73 E-value=9.8 Score=39.46 Aligned_cols=94 Identities=13% Similarity=0.016 Sum_probs=54.0
Q ss_pred HHHHHHH-ccCChhHHHHHHHhhccCCCCCCCH----HHHHHHHHHhhCCCChhHHHHHHHHHHHhcCC--CCHHHH-HH
Q 038112 7 RLLNLLK-AEKNPHTALALFDSATREPGYAHSP----HLFHHILRRLIDPKLVVHVSRILELIEIQKCY--CPEDVA-LS 78 (625)
Q Consensus 7 ~l~~~l~-~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~-~~ 78 (625)
+++++|. ...++++|..++.++......+.-. ..-..++..+.+.+... |.+.++..+..--. .....+ ..
T Consensus 64 ~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~fr 142 (608)
T PF10345_consen 64 RLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFR 142 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHH
Confidence 5677775 7788999999999876543221111 11233455555555544 88888887764311 112211 22
Q ss_pred HH--HHHHccCCchHHHHHHHHhHH
Q 038112 79 VI--QAYGKNSMPDKALDVFQRMNE 101 (625)
Q Consensus 79 l~--~~~~~~~~~~~A~~~~~~~~~ 101 (625)
++ ..+...+++..|.+.++.+..
T Consensus 143 ll~~~l~~~~~d~~~Al~~L~~~~~ 167 (608)
T PF10345_consen 143 LLKIQLALQHKDYNAALENLQSIAQ 167 (608)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 22 222233788888888887754
No 300
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.64 E-value=9.3 Score=38.93 Aligned_cols=143 Identities=11% Similarity=0.051 Sum_probs=91.2
Q ss_pred hhHHHHHHHHHHhCCCCCCCcchHHHHHHH-----HHhcCChhhHHHHHHHHHh-------CCCCCChhhHHHHHHHHHh
Q 038112 186 YMRAKEIWERLVMETSVYPNVVTYNVMING-----LCKCGRFDECLEMWDRMKK-------NEREKDSFTYCSFIHGLCK 253 (625)
Q Consensus 186 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~ 253 (625)
...+.+.++...+.+ +......++.+ +....|.+.|+.+|+.... .+ .+.....+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 456888888877765 33333333322 3456788999999888865 33 34456667777776
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh---
Q 038112 254 AG-----NVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA---GKIKECFELWEVMGRKGCLNVVSYNILIRGLLE--- 322 (625)
Q Consensus 254 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 322 (625)
.. +.+.|..++....+.|.+ +... .+...+... .+...|.++|......+.. .++..+..+|..
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~--~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGNP-DAQY--LLGVLYETGTKERDYRRAFEYYSLAAKAGHI--LAIYRLALCYELGLG 375 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCc-hHHH--HHHHHHHcCCccccHHHHHHHHHHHHHcCCh--HHHHHHHHHHHhCCC
Confidence 43 667799999888887633 4333 333333332 4578899999988877644 334444443332
Q ss_pred -CCCHHHHHHHHHHHHHcC
Q 038112 323 -NGKVDEAISIWELLREKN 340 (625)
Q Consensus 323 -~~~~~~a~~~~~~~~~~~ 340 (625)
..+...|..++.+..+.|
T Consensus 376 v~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG 394 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc
Confidence 346788888888888886
No 301
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.60 E-value=10 Score=39.25 Aligned_cols=59 Identities=15% Similarity=-0.018 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 038112 278 TYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELL 336 (625)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 336 (625)
.....++.....++++.+...+..|............-+..++...|+.++|...|+.+
T Consensus 314 ~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 314 LLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33334444445566666655555554433334444555555555566666666666554
No 302
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=93.49 E-value=7 Score=37.03 Aligned_cols=121 Identities=13% Similarity=0.080 Sum_probs=79.2
Q ss_pred CCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhh-------hcCChHHHHHHHHHHHHCCCCCCHhHHHH-
Q 038112 69 CYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILC-------RKRQFEKAKRFLNSLWEKGLKPDVYSYGT- 140 (625)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~- 140 (625)
.|-..+++..+...+..+|+.+.|.++.++++-.......... ..|.. + +.-...-|...|.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~---r------L~~~~~eNR~fflal 106 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNC---R------LDYRRPENRQFFLAL 106 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc---c------cCCccccchHHHHHH
Confidence 3568889999999999999999999999887542221111000 00000 0 00011123333333
Q ss_pred --HHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHH-hcCChhHHHHHHHHHHh
Q 038112 141 --VINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFF-KKGDYMRAKEIWERLVM 198 (625)
Q Consensus 141 --l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 198 (625)
.+..+.+.|.+..|+++.+-+...++.-|+......+..|+ +.++++--+++++....
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 35667889999999999999999877667777777777664 67888888888877654
No 303
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.32 E-value=7.7 Score=36.97 Aligned_cols=116 Identities=14% Similarity=0.069 Sum_probs=68.1
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-------
Q 038112 467 DMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTP---DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVP------- 536 (625)
Q Consensus 467 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------- 536 (625)
...++..++..+.+.|.++.|...+..+...+... .+.+...-+......|+..+|+..++.........
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34566677777778888888877777776632111 23344444556667777777777777666511110
Q ss_pred -------------------C-------HHHHHHHHHHHHcc------CChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 038112 537 -------------------N-------LVTYNTLMDGLFKT------GDCDKALEIWNHILEERLRPDI-ISYNITLKGL 583 (625)
Q Consensus 537 -------------------~-------~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~ 583 (625)
+ ...+..++.-+... +..+++...|.++.+ +.|+. ..|..+...+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK--LDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH--hChhHHHHHHHHHHHH
Confidence 0 12233334444444 777888888888888 66633 4555555443
Q ss_pred h
Q 038112 584 C 584 (625)
Q Consensus 584 ~ 584 (625)
.
T Consensus 303 ~ 303 (352)
T PF02259_consen 303 D 303 (352)
T ss_pred H
Confidence 3
No 304
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.26 E-value=4.8 Score=34.41 Aligned_cols=57 Identities=18% Similarity=0.181 Sum_probs=29.0
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHH------HHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 038112 513 LCSAGKVEDALQLYSNMKKRNCVPNLVTY------NTLMDGLFKTGDCDKALEIWNHILEERLRP 571 (625)
Q Consensus 513 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 571 (625)
-...+++.+|+++|++........+..-| ..-+-++....|.-.+...+++..+ +.|
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~--~dP 226 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE--LDP 226 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh--cCC
Confidence 34556677777777776654333222212 1222233333555555666666665 555
No 305
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.10 E-value=0.24 Score=28.03 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHH
Q 038112 575 SYNITLKGLCSCSRMSDAFEFLNDAL 600 (625)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (625)
++..+...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999965
No 306
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.08 E-value=1.1 Score=39.22 Aligned_cols=88 Identities=15% Similarity=0.116 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh----------------hHHH
Q 038112 500 TPDVTMYNILIHGLCS-----AGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDC----------------DKAL 558 (625)
Q Consensus 500 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------------~~A~ 558 (625)
.-|..+|...+..+.. .+..+-....++.|.+.|+..|..+|+.|+..+-+..-. +=++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 4467777777776653 356666777788888888888999999888876553211 1244
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 038112 559 EIWNHILEERLRPDIISYNITLKGLCSCS 587 (625)
Q Consensus 559 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 587 (625)
+++++|...|+-||.++-..++.++.+.+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 55555555555555555555555554433
No 307
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.08 E-value=1.2 Score=37.15 Aligned_cols=80 Identities=11% Similarity=0.026 Sum_probs=55.9
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhhcCCh
Q 038112 513 LCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEE---RLRPDIISYNITLKGLCSCSRM 589 (625)
Q Consensus 513 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~ 589 (625)
+.+.|+ +.|.+.|-.+...+.-.++.....|+..|. ..|.++++.++.++++. +-.+|++.+..|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344454 577777777777655556666667766665 45778888888888772 2356778888888888888888
Q ss_pred HHHHH
Q 038112 590 SDAFE 594 (625)
Q Consensus 590 ~~A~~ 594 (625)
+.|.-
T Consensus 195 e~AYi 199 (203)
T PF11207_consen 195 EQAYI 199 (203)
T ss_pred hhhhh
Confidence 87753
No 308
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.06 E-value=3 Score=32.82 Aligned_cols=46 Identities=15% Similarity=0.274 Sum_probs=24.8
Q ss_pred ccCCchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCC
Q 038112 85 KNSMPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKG 130 (625)
Q Consensus 85 ~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~ 130 (625)
..++++++..+++.+.-..|..+.+ +...|++.+|..+|+.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3555666666655554444444443 455555566665555555543
No 309
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.92 E-value=4.7 Score=33.42 Aligned_cols=92 Identities=16% Similarity=0.068 Sum_probs=48.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 038112 510 IHGLCSAGKVEDALQLYSNMKKRNCVPN--LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCS 587 (625)
Q Consensus 510 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 587 (625)
...+...|++++|..-++.........+ ..+--.|++.....|.+++|+..++...+.+. .......-.+++...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 4455666666666666665554311111 12223455556666666666666655544221 1222333445666666
Q ss_pred ChHHHHHHHHHHHHCC
Q 038112 588 RMSDAFEFLNDALCRG 603 (625)
Q Consensus 588 ~~~~A~~~~~~~~~~~ 603 (625)
+.++|+.-|++.++.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 6666666666666543
No 310
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.81 E-value=0.19 Score=27.96 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=16.5
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 540 TYNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
+|..++..|...|++++|...|+++++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666666666666666655
No 311
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.52 E-value=0.85 Score=40.96 Aligned_cols=95 Identities=12% Similarity=-0.005 Sum_probs=58.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 038112 475 INGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDC 554 (625)
Q Consensus 475 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 554 (625)
...|.+.|.+++|+.+|...+... +.++.++..-+.+|.+...+..|..-...++..+ ..-...|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 556777777777777777766642 2266666666777777777777766666655531 11133444445555556666
Q ss_pred hHHHHHHHHHHHcCCCCCH
Q 038112 555 DKALEIWNHILEERLRPDI 573 (625)
Q Consensus 555 ~~A~~~~~~~~~~~~~p~~ 573 (625)
.+|.+-++.+++ +.|+.
T Consensus 182 ~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 182 MEAKKDCETVLA--LEPKN 198 (536)
T ss_pred HHHHHhHHHHHh--hCccc
Confidence 777777777776 66653
No 312
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.45 E-value=4.8 Score=32.34 Aligned_cols=54 Identities=19% Similarity=0.069 Sum_probs=35.3
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 038112 477 GLCQSKKIDMALKLCCQFLQKGFTPDVT-MYNILIHGLCSAGKVEDALQLYSNMKKR 532 (625)
Q Consensus 477 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 532 (625)
.-.+.++.+.+..++..+.-. .|... .-..-+..+...|+|.+|..+|+.+...
T Consensus 19 ~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 335667788888888777664 34332 2223345567788888888888887664
No 313
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.15 E-value=6.4 Score=36.73 Aligned_cols=83 Identities=12% Similarity=0.003 Sum_probs=58.3
Q ss_pred HHHhhccCCCCCCCHHHHHHHHHHhhCCC---C---------hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchH
Q 038112 24 LFDSATREPGYAHSPHLFHHILRRLIDPK---L---------VVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDK 91 (625)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~---------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 91 (625)
-|+..++.+ |.+..+|..++..--..- . .+.-+.+|+++++.++ .+..++..++..+.+..+.+.
T Consensus 7 el~~~v~~~--P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 7 ELNRRVREN--PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHhC--cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHH
Confidence 455556656 888888888886433221 1 3445678888888864 678888888888888888888
Q ss_pred HHHHHHHhHHhhCCCcch
Q 038112 92 ALDVFQRMNEIFGCEAGI 109 (625)
Q Consensus 92 A~~~~~~~~~~~~~~~~~ 109 (625)
..+.++++...++..+.+
T Consensus 84 l~~~we~~l~~~~~~~~L 101 (321)
T PF08424_consen 84 LAKKWEELLFKNPGSPEL 101 (321)
T ss_pred HHHHHHHHHHHCCCChHH
Confidence 888888887766655544
No 314
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.96 E-value=0.0045 Score=49.77 Aligned_cols=53 Identities=8% Similarity=0.128 Sum_probs=26.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 038112 475 INGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYS 527 (625)
Q Consensus 475 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 527 (625)
+..+.+.+.+.....+++.+...+...+....+.++..|++.+..++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444445555555555555544333445555555666655555555555544
No 315
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.90 E-value=4.6 Score=30.94 Aligned_cols=31 Identities=10% Similarity=0.157 Sum_probs=12.0
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 038112 502 DVTMYNILIHGLCSAGKVEDALQLYSNMKKR 532 (625)
Q Consensus 502 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 532 (625)
++.....++.+|.+.|+..++.+++.++-+.
T Consensus 119 ~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 119 NPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3333334444444444444444444444433
No 316
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.78 E-value=12 Score=35.58 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=30.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038112 248 IHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGR 304 (625)
Q Consensus 248 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (625)
+.+.-+.|+++...+........ .++...+..+.. ...++++++...++.+..
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~--l~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLA--LRQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHH--HhCccHHHHHHHHHHHHH
Confidence 45667788888854444443322 123333333332 277888888887776654
No 317
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.69 E-value=2.3 Score=37.24 Aligned_cols=98 Identities=11% Similarity=0.167 Sum_probs=73.4
Q ss_pred CCCHhhHHHHHHHHhc-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC----------------CHHHHH
Q 038112 465 KPDMITYSLLINGLCQ-----SKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAG----------------KVEDAL 523 (625)
Q Consensus 465 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------~~~~A~ 523 (625)
+-|..+|...+..+.. .+..+=-...++.|.+.|+.-|..+|+.|+..+-+.. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 4466677777766643 3456666667788888999999999999999987653 234578
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 038112 524 QLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHIL 565 (625)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (625)
+++++|...|+.||..+-..|+.++. +..-...-+.+|+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FG---r~~~p~~K~~Rm~ 182 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFG---RWNFPTKKVKRML 182 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhc---cccccHHHHHHHH
Confidence 99999999999999999888888774 5556665555554
No 318
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=91.64 E-value=23 Score=38.37 Aligned_cols=105 Identities=11% Similarity=0.062 Sum_probs=71.4
Q ss_pred CCHHHHHHHHHccCChhHHHHHHHhhccC-CCCCCCHHHHHHHHHHhh----CCCC---hhHHHHHHHHHHHhcCCCCHH
Q 038112 3 ISAKRLLNLLKAEKNPHTALALFDSATRE-PGYAHSPHLFHHILRRLI----DPKL---VVHVSRILELIEIQKCYCPED 74 (625)
Q Consensus 3 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~----~~~~---~~~a~~~~~~~~~~~~~~~~~ 74 (625)
|+|=.+.+.+...+.|++|+..|+++... +|.....++-...+-+++ ..|+ +.+|+.-|+.+-.. +.-+-
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 553 (932)
T PRK13184 476 VSCLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPL 553 (932)
T ss_pred eecccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCch
Confidence 45555668888889999999999987754 344444444444444333 3344 55555555555432 22334
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch
Q 038112 75 VALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI 109 (625)
Q Consensus 75 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 109 (625)
-|..-+-.|-+.|++++=++.+.-+.+.++..|..
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 45555667899999999999999999999998887
No 319
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.46 E-value=2.1 Score=35.66 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 538 LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI--ISYNITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
...+..++..|.+.|+.+.|.+.|.++.+....|.. ..+..+++...-.|++..+...++++..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456789999999999999999999999996555543 5678888999999999999999998864
No 320
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.38 E-value=6.9 Score=31.93 Aligned_cols=134 Identities=16% Similarity=0.179 Sum_probs=74.9
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038112 121 RFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMET 200 (625)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 200 (625)
++++.+...+++|+...+..++..+.+.|++.... .+...++-+|+......+-.+. +.+..+.++--.|.++-
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh
Confidence 44555566778888888888888888888755443 3444555556554443332222 23344444433443321
Q ss_pred CCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038112 201 SVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVE 269 (625)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 269 (625)
...+..+++.+...|++-+|+++.+.... .+......++.+....+|...-..+++-..+
T Consensus 89 -----~~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 -----GTAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred -----hhhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11455667778888888888888776532 1222233455555556665555555544444
No 321
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.07 E-value=2.6 Score=41.28 Aligned_cols=100 Identities=13% Similarity=-0.020 Sum_probs=68.6
Q ss_pred hCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHH
Q 038112 49 IDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWE 128 (625)
Q Consensus 49 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 128 (625)
.+.|+++.|.++..+.. +..-|..|+++..+.+++..|.+.|.+. ..++....++...|+-+.-..+-....+
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a-~d~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRA-RDLGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhh-cchhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 45688888877654433 4667888898888999999999998887 4455555556667776655555555555
Q ss_pred CCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHH
Q 038112 129 KGLKPDVYSYGTVINGLVKSGDLLGALAVFDEM 161 (625)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 161 (625)
.| +. |...-++...|++++.++++..-
T Consensus 721 ~g-~~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 721 QG-KN-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hc-cc-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 55 22 33334566789999888887654
No 322
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=90.92 E-value=9.7 Score=32.80 Aligned_cols=93 Identities=14% Similarity=-0.031 Sum_probs=60.6
Q ss_pred HHHHHHHHccCC-------hhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHH
Q 038112 6 KRLLNLLKAEKN-------PHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALS 78 (625)
Q Consensus 6 ~~l~~~l~~~~~-------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 78 (625)
+.++.-+..+|+ ++.|+.-|-+++..+ |..+.-|..-+..+++..+++.+..--..+++..+ ...-..+.
T Consensus 7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~-N~vk~h~f 83 (284)
T KOG4642|consen 7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP-NLVKAHYF 83 (284)
T ss_pred chHHHHHHhccccccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh-HHHHHHHH
Confidence 444555554443 677777777777666 66666666677777777777777777777776542 23445556
Q ss_pred HHHHHHccCCchHHHHHHHHhHH
Q 038112 79 VIQAYGKNSMPDKALDVFQRMNE 101 (625)
Q Consensus 79 l~~~~~~~~~~~~A~~~~~~~~~ 101 (625)
++..+.....+++|+.++.+...
T Consensus 84 lg~~~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 84 LGQWLLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred HHHHHHhhccccHHHHHHHHHHH
Confidence 66777777777777777776633
No 323
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.88 E-value=4.6 Score=39.72 Aligned_cols=132 Identities=13% Similarity=0.134 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChh
Q 038112 73 EDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLL 152 (625)
Q Consensus 73 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 152 (625)
......+++.+.++|..++|+++-..- .....+..+.|+++.|.++..+. .+..-|..|..+....+++.
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~s~D~----d~rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~ 683 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALELSTDP----DQRFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELP 683 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhcCCCh----hhhhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccch
Confidence 345556666666777666666553221 11122234555566555554433 23445666666666666666
Q ss_pred hHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHH
Q 038112 153 GALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWD 230 (625)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 230 (625)
.|.+.|....+. ..|+-.+...|+.+....+-....+.+ ..|....+|...|+++++.+++.
T Consensus 684 lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~g-------~~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 684 LASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQG-------KNNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred hHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhhc-------ccchHHHHHHHcCCHHHHHHHHH
Confidence 666666554432 234444445555544333333333322 11122234455566666655554
No 324
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.85 E-value=6.8 Score=30.93 Aligned_cols=54 Identities=15% Similarity=-0.026 Sum_probs=36.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 038112 287 CRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKN 340 (625)
Q Consensus 287 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 340 (625)
...++++++..++..+.-..|.....-..-...+...|++++|.++|+.+.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 346777777777777776666655555555556677777777777777777664
No 325
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=90.69 E-value=1.7 Score=31.11 Aligned_cols=73 Identities=7% Similarity=-0.007 Sum_probs=50.1
Q ss_pred HHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCchHHHHHH
Q 038112 22 LALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYC-PEDVALSVIQAYGKNSMPDKALDVF 96 (625)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 96 (625)
+..++..+..+ |.+..+-..++..+...|++++|.+.+-.+++.+... +......++.++.-.|.-+....-+
T Consensus 8 ~~al~~~~a~~--P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~ 81 (90)
T PF14561_consen 8 IAALEAALAAN--PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEY 81 (90)
T ss_dssp HHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHH
Confidence 34455556666 8899999999999999999999999999999886443 3456667777777667654443333
No 326
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.53 E-value=0.36 Score=26.43 Aligned_cols=29 Identities=3% Similarity=-0.124 Sum_probs=20.5
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHhc
Q 038112 40 LFHHILRRLIDPKLVVHVSRILELIEIQK 68 (625)
Q Consensus 40 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 68 (625)
++..++.++.+.|++++|.+.|+.+++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 45566667777777777777777777765
No 327
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.45 E-value=0.028 Score=45.15 Aligned_cols=130 Identities=12% Similarity=0.208 Sum_probs=73.0
Q ss_pred HHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 038112 5 AKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYG 84 (625)
Q Consensus 5 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (625)
+..+.+.+.+.+.+.....+++.+.... ...++.....++..|++.+..+...+.++ .. +..-...+++.+.
T Consensus 10 ~~~vi~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~~L~~ly~~~~~~~~l~~~L~----~~---~~yd~~~~~~~c~ 81 (143)
T PF00637_consen 10 ISEVISAFEERNQPEELIEYLEALVKEN-KENNPDLHTLLLELYIKYDPYEKLLEFLK----TS---NNYDLDKALRLCE 81 (143)
T ss_dssp SCCCHHHCTTTT-GGGCTCCHHHHHHTS-TC-SHHHHHHHHHHHHCTTTCCHHHHTTT----SS---SSS-CTHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcc-cccCHHHHHHHHHHHHhcCCchHHHHHcc----cc---cccCHHHHHHHHH
Confidence 3445566666777777777777766433 23557777777788887777677766665 11 1122235666667
Q ss_pred ccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 038112 85 KNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSG 149 (625)
Q Consensus 85 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 149 (625)
+.|.+++|.-++.++ ..+......+...++++.|.+.+.+ .++...|..++..+...+
T Consensus 82 ~~~l~~~a~~Ly~~~-~~~~~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~ 139 (143)
T PF00637_consen 82 KHGLYEEAVYLYSKL-GNHDEALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSK 139 (143)
T ss_dssp TTTSHHHHHHHHHCC-TTHTTCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTST
T ss_pred hcchHHHHHHHHHHc-ccHHHHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcC
Confidence 777777777777665 2222222233344555555532222 134566666666665444
No 328
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.28 E-value=5.4 Score=33.42 Aligned_cols=78 Identities=14% Similarity=-0.003 Sum_probs=53.3
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCChh
Q 038112 479 CQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKR---NCVPNLVTYNTLMDGLFKTGDCD 555 (625)
Q Consensus 479 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~ 555 (625)
.+.|+ +.|...|-.+...+.-.++.....|+..|. ..+.++++.++.+..+. +-.+|+.++..|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 567777777766654456666666665554 67788888888777764 22567888888888888888887
Q ss_pred HHH
Q 038112 556 KAL 558 (625)
Q Consensus 556 ~A~ 558 (625)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 764
No 329
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.21 E-value=2.2 Score=30.45 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112 117 EKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER 164 (625)
Q Consensus 117 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 164 (625)
-+.++-++.+...++-|++....+.+++|.+.+|+..|.++|+-++..
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 355566666666777788888888888888888888888888877643
No 330
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.17 E-value=0.9 Score=25.08 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=13.8
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHhHH
Q 038112 75 VALSVIQAYGKNSMPDKALDVFQRMNE 101 (625)
Q Consensus 75 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 101 (625)
++..++..|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555555555443
No 331
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.01 E-value=15 Score=33.63 Aligned_cols=130 Identities=14% Similarity=0.171 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc--cC----CHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHcCCC--
Q 038112 450 GEAYSFVKEMLEKGWKPDMITYSLLINGLCQ--SK----KIDMALKLCCQFLQKGF---TPDVTMYNILIHGLCSAGK-- 518 (625)
Q Consensus 450 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~-- 518 (625)
++.+.+++.+.+.|+.-+..++......... .. ...+|..+++.|.+..+ .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445666777777776665554442222221 22 24567777777776421 1223333333222 2333
Q ss_pred --HHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCC--hhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038112 519 --VEDALQLYSNMKKRNCVPN--LVTYNTLMDGLFKTGD--CDKALEIWNHILEERLRPDIISYNITLK 581 (625)
Q Consensus 519 --~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 581 (625)
.+.+..+|+.+.+.|+..+ ......++..+..... ..++.++++.+.+.|+++....|..++-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 2455667777777666543 2233333333222222 3466777777777777766655554443
No 332
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.94 E-value=25 Score=35.96 Aligned_cols=243 Identities=16% Similarity=0.089 Sum_probs=136.7
Q ss_pred CCCHHHHHHHHHHHHH-------cCCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 038112 323 NGKVDEAISIWELLRE-------KNCNADSTTHGVLINGLCKNG-----YLNKAIQILNEVEEGGEGRLADAASLVNRMD 390 (625)
Q Consensus 323 ~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~ 390 (625)
..+.+.|+.+++.+.+ .+ .+.....+..+|.+.. +.+.|..++. ...
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~------------------~aA 320 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYT------------------KAA 320 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHH------------------HHH
Confidence 3456666666665554 33 3334455566665533 4566666666 333
Q ss_pred hCCCCccHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh----ccCCHHHHHHHHHHHHHCC
Q 038112 391 KHGCKLNAYTCNSLMNGFIQA---SKLENAIFLFKEMSRKGCSPTVVSYNTLINGLC----KVERFGEAYSFVKEMLEKG 463 (625)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~ 463 (625)
..+.+ +.. ..+..++... .+...|.++|......|.. ..+-.+..+|. -..+...|..++.+..+.|
T Consensus 321 ~~g~~-~a~--~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 321 ELGNP-DAQ--YLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred hcCCc-hHH--HHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 44322 222 2233333322 4678999999998887633 33333332222 2447889999999999887
Q ss_pred CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHc----CCCHHHHHHHHHHHHhCCCCC
Q 038112 464 WKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHG---LCS----AGKVEDALQLYSNMKKRNCVP 536 (625)
Q Consensus 464 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~----~g~~~~A~~~~~~~~~~~~~~ 536 (625)
.|........+..+.. +.++.+.-.+..+...|.+.....-..+... ... ..+...+...+.+....|
T Consensus 395 -~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g--- 469 (552)
T KOG1550|consen 395 -NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG--- 469 (552)
T ss_pred -ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc---
Confidence 4443333333344444 7777777666666665433111111111111 111 225667777777777655
Q ss_pred CHHHHHHHHHHHHcc----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCChHHHHHHHHHHHHC
Q 038112 537 NLVTYNTLMDGLFKT----GDCDKALEIWNHILEERLRPDIISYNITLKGLCS----CSRMSDAFEFLNDALCR 602 (625)
Q Consensus 537 ~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 602 (625)
+......|+.+|... .+++.|...|..+.+.+ ......+...+-+ .. ...|.++++...+.
T Consensus 470 ~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 470 NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEE 538 (552)
T ss_pred CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhc
Confidence 667777788777654 36888988888888754 4444444443332 23 67888888888754
No 333
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.81 E-value=0.86 Score=26.66 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 539 VTYNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
.+++.|+..|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455666666666666666666666554
No 334
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.79 E-value=26 Score=36.04 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=14.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHH
Q 038112 314 NILIRGLLENGKVDEAISIWELLR 337 (625)
Q Consensus 314 ~~l~~~~~~~~~~~~a~~~~~~~~ 337 (625)
..|+..|...+++..|+.++-.+.
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhcc
Confidence 336666666666666666665444
No 335
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.78 E-value=6.1 Score=28.68 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 521 DALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 521 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
+..+-++.+...++.|++.+....+++|.+.+|+.-|+++++-+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455555555556666677777777777777777777777666655
No 336
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.71 E-value=2.7 Score=30.36 Aligned_cols=59 Identities=15% Similarity=0.272 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHH
Q 038112 118 KAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILI 177 (625)
Q Consensus 118 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 177 (625)
+.++-++.+...++-|++.+..+.+++|.+.+++..|.++|+-++.. ..+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHH
Confidence 45556666667777788888888888888888888888888877765 222233555554
No 337
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.63 E-value=4.2 Score=34.85 Aligned_cols=119 Identities=12% Similarity=0.001 Sum_probs=77.0
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCh
Q 038112 477 GLCQSKKIDMALKLCCQFLQKGFTPDV-TMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN-LVTYNTLMDGLFKTGDC 554 (625)
Q Consensus 477 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 554 (625)
.|.....++.|...+.+.+.. .|+. .-|..-+.++.+..+++.+..--.+.++ +.|| ......++.+......+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 356666778888887777764 4554 4455666777778888888777777776 3455 44555666777777788
Q ss_pred hHHHHHHHHHHHc----CCCCCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 038112 555 DKALEIWNHILEE----RLRPDIISYNITLKGLCSCSRMSDAFEFLNDA 599 (625)
Q Consensus 555 ~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 599 (625)
++|+..+.++.+. .+.|...+...|..+-.+.-...+..++.++.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8888888887542 23344455666666544444555555555554
No 338
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=89.17 E-value=2 Score=41.92 Aligned_cols=110 Identities=15% Similarity=-0.012 Sum_probs=73.8
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038112 469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGL 548 (625)
Q Consensus 469 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (625)
..++...-.+...|+...|.+.+..+........-.....|+....+.|..-+|-.++.+..... ...+.++..+++++
T Consensus 608 ~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~ 686 (886)
T KOG4507|consen 608 LILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAY 686 (886)
T ss_pred EEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhH
Confidence 33444444455678888888888777653222222334456677777778888888888877763 44577788888888
Q ss_pred HccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038112 549 FKTGDCDKALEIWNHILEERLRP-DIISYNITLK 581 (625)
Q Consensus 549 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 581 (625)
....++++|++.|+++++ ..| +...-+.+..
T Consensus 687 l~l~~i~~a~~~~~~a~~--~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 687 LALKNISGALEAFRQALK--LTTKCPECENSLKL 718 (886)
T ss_pred HHHhhhHHHHHHHHHHHh--cCCCChhhHHHHHH
Confidence 888899999999999888 455 3344444443
No 339
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.04 E-value=23 Score=34.25 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=39.9
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHH-------cCCCCC----------HHHHHHHHHHHhhcCChHHHHHHHHHHHHCC
Q 038112 541 YNTLMDGLFKTGDCDKALEIWNHILE-------ERLRPD----------IISYNITLKGLCSCSRMSDAFEFLNDALCRG 603 (625)
Q Consensus 541 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (625)
||.|+-.+.+.|.+.-+..+|.+++. .|++|. .++.....-.|.+.|++-.|.+-|.+....
T Consensus 286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v- 364 (696)
T KOG2471|consen 286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV- 364 (696)
T ss_pred ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-
Confidence 35555555555555555555555542 243331 122233344555666666666666655542
Q ss_pred CCCCHHHHHHHHHHHH
Q 038112 604 ILPTTITWHILVRAVM 619 (625)
Q Consensus 604 ~~~~~~~~~~l~~~~~ 619 (625)
+.-++..|=.+..+|.
T Consensus 365 fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 365 FHRNPRLWLRLAECCI 380 (696)
T ss_pred HhcCcHHHHHHHHHHH
Confidence 4455566655555554
No 340
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.87 E-value=5.4 Score=35.73 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=54.6
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038112 465 KPDMITYSLLINGLCQSKKIDMALKLCCQFLQKG---FTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTY 541 (625)
Q Consensus 465 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 541 (625)
+....+...++..-....+++.+...+-++.... ..|+...+ ..++.+ ..-++++++.++..-++.|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchhhH
Confidence 3334444555544455566666666666555420 11111111 122222 233556666666666666777777777
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHH
Q 038112 542 NTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 542 ~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
+.+++.+.+.+++.+|..+.-.|+.
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7777777777777776666665554
No 341
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=88.42 E-value=32 Score=35.23 Aligned_cols=120 Identities=12% Similarity=0.045 Sum_probs=68.8
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 038112 477 GLCQSKKIDMALKLCCQFLQKGFTPD--VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDC 554 (625)
Q Consensus 477 ~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 554 (625)
++..-|+-+.|..+.+++.... .|- ..-...++.+|+-.|+.....+++.-.+.. ...|..-....+-++.-..++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 4445566667777777776532 221 112234556677777777666766665543 233444444555556666677
Q ss_pred hHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhhcCChHHHHHHHHHHH
Q 038112 555 DKALEIWNHILEERLRPDII--SYNITLKGLCSCSRMSDAFEFLNDAL 600 (625)
Q Consensus 555 ~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (625)
+....+..-+.+. ..|-.. +-..|.-+|.-.|. .+|+.+++-|.
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~ 633 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLT 633 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhh
Confidence 7777777666553 444332 22333445555665 47788888776
No 342
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.40 E-value=12 Score=32.43 Aligned_cols=63 Identities=17% Similarity=0.068 Sum_probs=31.9
Q ss_pred HHHHHHHHHHccCCh-------hHHHHHHHHHHHcCCCC----CH-HHHHHHHHHHhhcCChHHHHHHHHHHHHC
Q 038112 540 TYNTLMDGLFKTGDC-------DKALEIWNHILEERLRP----DI-ISYNITLKGLCSCSRMSDAFEFLNDALCR 602 (625)
Q Consensus 540 ~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~p----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (625)
++..+++.|...|+. ..|.+.|+++.+..-.| +. .....++....+.|++++|.++|.++...
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 344555555555553 23444444444432221 12 23333445566667777777777777643
No 343
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.17 E-value=30 Score=36.91 Aligned_cols=125 Identities=10% Similarity=0.101 Sum_probs=61.8
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHccCCc--hHHHHHHHHhHHhhCCCcchhhhcC
Q 038112 40 LFHHILRRLIDPKLVVHVSRILELIEIQK---CYCPEDVALSVIQAYGKNSMP--DKALDVFQRMNEIFGCEAGILCRKR 114 (625)
Q Consensus 40 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (625)
-|..|+..|...|..++|+++|....+.. .+...+.+-.+++-+.+.+.. +-.+++-+... +.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl------------~~ 573 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVL------------NK 573 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhh------------cc
Confidence 35566666777777777777777776632 011122233344444444433 33333333332 23
Q ss_pred ChHHHHHHHHHH---HHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHh
Q 038112 115 QFEKAKRFLNSL---WEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFK 182 (625)
Q Consensus 115 ~~~~A~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (625)
+++...++|..- ....+++ ..++ .+......+.++..++.+....-.++....+.++..|.+
T Consensus 574 ~p~~gi~Ift~~~~~~~~sis~-----~~Vl-~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 574 NPEAGIQIFTSEDKQEAESISR-----DDVL-NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred CchhheeeeeccChhhhccCCH-----HHHH-HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 344444444430 1111111 1122 245566677777778877766545566666666666654
No 344
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.83 E-value=7.9 Score=38.04 Aligned_cols=62 Identities=8% Similarity=-0.070 Sum_probs=39.2
Q ss_pred HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCC
Q 038112 7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCY 70 (625)
Q Consensus 7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 70 (625)
.|+.+|.+.|...+|--++..|.... +.-..-++.++++++..+.+......|....+.++.
T Consensus 254 SlaTiL~RaG~sadA~iILhAA~~dA--~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~ 315 (886)
T KOG4507|consen 254 SLATVLHRAGFSADAAVILHAALDDA--DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPG 315 (886)
T ss_pred hHHHHHHHcccccchhheeehhccCC--ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcc
Confidence 35677777777777777776665443 222222566677777777777777777777766643
No 345
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.39 E-value=32 Score=34.09 Aligned_cols=175 Identities=13% Similarity=0.029 Sum_probs=102.7
Q ss_pred CCCChhHHHHHHHHHHHhc-----------CCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch--hhhcCCh
Q 038112 50 DPKLVVHVSRILELIEIQK-----------CYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI--LCRKRQF 116 (625)
Q Consensus 50 ~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~ 116 (625)
....|+++...|..+.... .|...+.+..++..+-.+|+.+.|..+.++.+-...+.... -.-.|+.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 3556788888888777654 24456677888899999999999999888764421111111 0000000
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHH---HHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHH-hcCChhHHHHH
Q 038112 117 EKAKRFLNSLWEKGLKPDVYSYGT---VINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFF-KKGDYMRAKEI 192 (625)
Q Consensus 117 ~~A~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~ 192 (625)
. +....+-|...|.. .++.+.+.|.+..|.++..-+.+..+.-|+.....++..|+ +..+|+-.+++
T Consensus 330 R---------L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~ 400 (665)
T KOG2422|consen 330 R---------LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIEL 400 (665)
T ss_pred c---------CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHH
Confidence 0 00001122222322 24556788999999999999988876667887777777765 66788888888
Q ss_pred HHHHHhCCC--CCCCcchHHHHHHHHHhcCC---hhhHHHHHHHHH
Q 038112 193 WERLVMETS--VYPNVVTYNVMINGLCKCGR---FDECLEMWDRMK 233 (625)
Q Consensus 193 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~ 233 (625)
++.....+. .-||..--..++..|.+... ...|...+.+..
T Consensus 401 ~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 401 SNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQAL 446 (665)
T ss_pred HHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 877644321 22333223334444444433 334444444444
No 346
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.04 E-value=1.8 Score=25.26 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 038112 503 VTMYNILIHGLCSAGKVEDALQLYSNMKK 531 (625)
Q Consensus 503 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 531 (625)
..+++.++..|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678888889899999999998888765
No 347
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=86.75 E-value=32 Score=33.44 Aligned_cols=100 Identities=12% Similarity=0.081 Sum_probs=69.8
Q ss_pred CCCHHH-HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--ccCChhHHHHHHHHHHHcCCCCCHHHH
Q 038112 500 TPDVTM-YNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLF--KTGDCDKALEIWNHILEERLRPDIISY 576 (625)
Q Consensus 500 ~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~p~~~~~ 576 (625)
.|+..+ -+.++..+.+.|-+++|...+..+... .+|+...|..++..-. ..-+..-+..+|+.|... ...|+..|
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw 533 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLW 533 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHH
Confidence 344333 356677777888899999999998886 4667777777665432 223477788888888764 23577777
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 577 NITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 577 ~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
......-...|+.+.+-.++.++.+
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHH
Confidence 7777666678888887777777654
No 348
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.58 E-value=0.82 Score=23.49 Aligned_cols=15 Identities=27% Similarity=0.266 Sum_probs=5.7
Q ss_pred HHHHHccCChhHHHH
Q 038112 9 LNLLKAEKNPHTALA 23 (625)
Q Consensus 9 ~~~l~~~~~~~~A~~ 23 (625)
++++..+|++++|..
T Consensus 8 a~~~~~~G~~~eA~~ 22 (26)
T PF07721_consen 8 ARALLAQGDPDEAER 22 (26)
T ss_pred HHHHHHcCCHHHHHH
Confidence 333333333333333
No 349
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.52 E-value=23 Score=31.62 Aligned_cols=58 Identities=21% Similarity=0.165 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 038112 280 NAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLR 337 (625)
Q Consensus 280 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 337 (625)
......|..+|.+.+|.++.+.....+|.+...+..++..+...|+--.+.+.++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3445566777777777777777777777777777777777777777666666665554
No 350
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.48 E-value=1.9 Score=25.77 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=14.9
Q ss_pred HHHHHHHccCChhHHHHHHHHHHH
Q 038112 543 TLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 543 ~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
.|+.+|...|+.+.|.+++++++.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 355666666666666666666664
No 351
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.45 E-value=17 Score=29.80 Aligned_cols=122 Identities=14% Similarity=0.180 Sum_probs=65.1
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHh
Q 038112 227 EMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAG--KIKECFELWEVMGR 304 (625)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 304 (625)
+.++.+.+.+++++...+..++..+.+.|.+.... .++..++-+|.......+-.+.... -.+-+.+++.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 45556666677777777888888888777755433 3444455555544443332222111 1223333333332
Q ss_pred cCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 038112 305 KGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNK 363 (625)
Q Consensus 305 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 363 (625)
..+..++..+...|++-+|+++.+..... +......++.+..+.++...
T Consensus 90 ------~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~l 138 (167)
T PF07035_consen 90 ------TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQL 138 (167)
T ss_pred ------hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHH
Confidence 24556667777888888888777664332 22222344455444444433
No 352
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.33 E-value=0.96 Score=23.24 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=10.3
Q ss_pred HHHHHHHHccCCchHHHHHH
Q 038112 77 LSVIQAYGKNSMPDKALDVF 96 (625)
Q Consensus 77 ~~l~~~~~~~~~~~~A~~~~ 96 (625)
..++..+...|++++|..++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 34455555555555555544
No 353
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=86.29 E-value=27 Score=32.13 Aligned_cols=190 Identities=15% Similarity=-0.004 Sum_probs=114.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh----ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc----c
Q 038112 410 QASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLC----KVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQ----S 481 (625)
Q Consensus 410 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 481 (625)
..+++..+...+......+ +......+...|. ...+..+|..++....+.|.. .....+...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcc
Confidence 3455666666666665532 2233333333333 234577788888877765532 233334444443 3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----
Q 038112 482 KKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAG-------KVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK---- 550 (625)
Q Consensus 482 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 550 (625)
.+..+|...+.++.+.|..+.......+...|.... +...|...|.++...+ +......|+..|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 478888888888888774433233445555554431 2337888888888765 55566666666644
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC---------------ChHHHHHHHHHHHHCCCCCCHHHHH
Q 038112 551 TGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCS---------------RMSDAFEFLNDALCRGILPTTITWH 612 (625)
Q Consensus 551 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~~~~~~~~~ 612 (625)
..+..+|...|.++.+.|. ......+. .+...| +...|..++......+.........
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 3478889999999888653 33333333 445444 7778888888888776655555554
No 354
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=86.01 E-value=14 Score=28.60 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH
Q 038112 500 TPDVTMYNILIHGLCSAGK---VEDALQLYSNMKKRNCVP--NLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI 573 (625)
Q Consensus 500 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 573 (625)
.++..+-..+.+++.+..+ ..+.+.+++.+.+.. .| .......|+-++.+.+++++++++.+.+++ ..||.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCc
Confidence 4566666777888877664 456677888887632 23 244556677788888899999998888888 66654
No 355
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.40 E-value=25 Score=30.91 Aligned_cols=248 Identities=14% Similarity=0.094 Sum_probs=115.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCCChhhHH
Q 038112 281 AMIDGFCRAGKIKECFELWEVMGRKG------CLNVVSYNILIRGLLENGKVDEAISIWELLREK-----NCNADSTTHG 349 (625)
Q Consensus 281 ~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~ 349 (625)
.++..+.+.+++++..+.+.++..-- .-+..+.+.++.......+.+....+|+.-+.. +-+.--.|-.
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 34444555555555555544443210 013344445554444444444444433322211 0111122334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C
Q 038112 350 VLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRK-G 428 (625)
Q Consensus 350 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 428 (625)
.+...|...+.+....+++.++.......-.+ .-.+.|. .-..+|..-+..|....+-..-..++++.... .
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe------dD~kKGt-QLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKS 222 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE------DDQKKGT-QLLEIYALEIQMYTEQKNNKKLKALYEQALHIKS 222 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCc------hhhhccc-hhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhc
Confidence 56777788888888888877665432110000 0011111 12345666677888888777777888876542 1
Q ss_pred CCCChhhHHHHHHH-----HhccCCHHHHHHH-HHHHHH---CCCCCCHhh---HHHHHHHHhccCC-HHHHHHHHHHHH
Q 038112 429 CSPTVVSYNTLING-----LCKVERFGEAYSF-VKEMLE---KGWKPDMIT---YSLLINGLCQSKK-IDMALKLCCQFL 495 (625)
Q Consensus 429 ~~~~~~~~~~l~~~-----~~~~~~~~~a~~~-~~~~~~---~~~~~~~~~---~~~l~~~~~~~~~-~~~A~~~~~~~~ 495 (625)
.-|.+... .+|+- ..+.|++++|..- |+.... .| .|...+ |..+...+.+.|- +-... ++.
T Consensus 223 AIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLANMLmkS~iNPFDsQ----EAK 296 (440)
T KOG1464|consen 223 AIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLANMLMKSGINPFDSQ----EAK 296 (440)
T ss_pred cCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHHHHHHHcCCCCCccc----ccC
Confidence 22343333 23333 3457788877643 333332 23 222222 3344444444431 00000 001
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038112 496 QKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNT 543 (625)
Q Consensus 496 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 543 (625)
-..-.|.......++.+|. .++..+-.+++..-... +-.|+.+-..
T Consensus 297 PyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~~~~~-IM~DpFIReh 342 (440)
T KOG1464|consen 297 PYKNDPEILAMTNLVAAYQ-NNDIIEFERILKSNRSN-IMDDPFIREH 342 (440)
T ss_pred CCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHhhhcc-ccccHHHHHH
Confidence 1111344566778888884 45565555555544433 5556655443
No 356
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.36 E-value=50 Score=34.37 Aligned_cols=185 Identities=12% Similarity=0.183 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHH-CCCCCC--HhHHHHHHHHHH-hcCChhhHHHHHHHHHhCCCCCCch-----hhHHHHHHHHhcCChh
Q 038112 117 EKAKRFLNSLWE-KGLKPD--VYSYGTVINGLV-KSGDLLGALAVFDEMFERGVETNVV-----CYNILIDGFFKKGDYM 187 (625)
Q Consensus 117 ~~A~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~ 187 (625)
..|+++++.+.. ..++|. ..++..+...+. ...+++.|...+++.+..--.++.. ....+++.+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 456666666663 333332 233444555554 5667777777777765442222211 1223455565555555
Q ss_pred HHHHHHHHHHhCCCCCCC---cchHHHH-HHHHHhcCChhhHHHHHHHHHhCC---CCCChhhHHHHHHHHH--hcCCHH
Q 038112 188 RAKEIWERLVMETSVYPN---VVTYNVM-INGLCKCGRFDECLEMWDRMKKNE---REKDSFTYCSFIHGLC--KAGNVE 258 (625)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~---~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~ 258 (625)
|...+++..+.-...+. ...+..+ +..+...+++..|.+.++.+.... ..|...++..++.+.. ..+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 77777665554211111 1122222 222323367777777777665432 1233333444444332 345455
Q ss_pred HHHHHHHHHHHCCC---------CcCHHHHHHHHHHH--HhcCCHHHHHHHHHHH
Q 038112 259 GAERVYREMVESGI---------FVDAVTYNAMIDGF--CRAGKIKECFELWEVM 302 (625)
Q Consensus 259 ~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 302 (625)
.+.+.++.+..... .|...++..++..+ ...|+++.+...++++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56666655532211 22344455554443 3456655655555444
No 357
>PRK09687 putative lyase; Provisional
Probab=85.33 E-value=29 Score=31.61 Aligned_cols=203 Identities=11% Similarity=0.055 Sum_probs=128.6
Q ss_pred cHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCH-----HHHHHHHHHHHHCCCCCC
Q 038112 397 NAYTCNSLMNGFIQASKL----ENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERF-----GEAYSFVKEMLEKGWKPD 467 (625)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~ 467 (625)
++..-...+.++.+.|+. +.+...+..+... .++...-...+.++...+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 444445555566666652 4566677666443 35655555666666554421 233444434333 345
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038112 468 MITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAG-KVEDALQLYSNMKKRNCVPNLVTYNTLMD 546 (625)
Q Consensus 468 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 546 (625)
..+-...+.++.+.++ +.+...+..+++ .++..+-...+.++...+ ....+...+..+.. .+|..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 5666677777877776 567777777776 345555555555565543 24567777777774 457777778888
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 038112 547 GLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMN 620 (625)
Q Consensus 547 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 620 (625)
++.+.|+ ..|+..+-+.++. ++ .....+.++...|.. +|+..+..+.+. .||..+-...+.+|.+
T Consensus 215 aLg~~~~-~~av~~Li~~L~~---~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 215 GLALRKD-KRVLSVLIKELKK---GT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHccCC-hhHHHHHHHHHcC---Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 8888888 5677777777763 23 345677888888885 799999999863 3688777777777753
No 358
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.32 E-value=50 Score=34.31 Aligned_cols=41 Identities=12% Similarity=0.147 Sum_probs=19.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 038112 247 FIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR 288 (625)
Q Consensus 247 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (625)
++-.|.+.|++++|.++....... .......+...+..|..
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHh
Confidence 455566666666666666333322 22233444444555444
No 359
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.32 E-value=27 Score=31.25 Aligned_cols=71 Identities=13% Similarity=0.121 Sum_probs=57.8
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHH-----HCCCCCCHHHHH
Q 038112 540 TYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDAL-----CRGILPTTITWH 612 (625)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~ 612 (625)
++....+.|..+|.+.+|.++.++++. +.| +...+..++..+...|+--.|.+-++++. +.|+..|...++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 455677889999999999999999998 777 77788888899999999888888888774 357777766544
No 360
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.23 E-value=26 Score=30.87 Aligned_cols=251 Identities=11% Similarity=0.105 Sum_probs=138.4
Q ss_pred CCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---C--CCCChhhHHHHHHHHHhcCC
Q 038112 290 GKIKECFELWEVMGRKGCL----NVVSYNILIRGLLENGKVDEAISIWELLREK---N--CNADSTTHGVLINGLCKNGY 360 (625)
Q Consensus 290 ~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~ 360 (625)
.++++|+.-|+++....+. .-.+...++....+.+++++....|.+++.- . -.-+..+.+.++...+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 4566666666666554332 3345566788888999999998888877642 0 11244556666666666666
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----------
Q 038112 361 LNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCS---------- 430 (625)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------- 430 (625)
.+.....++.-.. .+...... ..--.+-..+...|...+.+.+..+++.++....-.
T Consensus 121 m~LLQ~FYeTTL~-----------ALkdAKNe--RLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKG 187 (440)
T KOG1464|consen 121 MDLLQEFYETTLD-----------ALKDAKNE--RLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKG 187 (440)
T ss_pred hHHHHHHHHHHHH-----------HHHhhhcc--eeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhcc
Confidence 6655555553111 11111111 111112245777888889999999998888753111
Q ss_pred -CChhhHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHH-----HhccCCHHHHHHHHHHHHh----CCC
Q 038112 431 -PTVVSYNTLINGLCKVERFGEAYSFVKEMLEK-GWKPDMITYSLLING-----LCQSKKIDMALKLCCQFLQ----KGF 499 (625)
Q Consensus 431 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~----~~~ 499 (625)
.-...|..-|+.|....+-..-..++++.+.- .--|.+... .+++- ..+.|++++|..-|-++.+ .|.
T Consensus 188 tQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGs 266 (440)
T KOG1464|consen 188 TQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS 266 (440)
T ss_pred chhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCC
Confidence 11345777788888777777777778776542 122333332 33333 3567888887654444333 342
Q ss_pred CCCHH--HHHHHHHHHHcCC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 038112 500 TPDVT--MYNILIHGLCSAG----KVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWN 562 (625)
Q Consensus 500 ~~~~~--~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 562 (625)
+.... -|..|+..+.+.| +-++|. ...-.|.......|+.+|... +..+-.++++
T Consensus 267 pRRttCLKYLVLANMLmkS~iNPFDsQEAK-------PyKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il~ 327 (440)
T KOG1464|consen 267 PRRTTCLKYLVLANMLMKSGINPFDSQEAK-------PYKNDPEILAMTNLVAAYQNN-DIIEFERILK 327 (440)
T ss_pred cchhHHHHHHHHHHHHHHcCCCCCcccccC-------CCCCCHHHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence 22222 2444555565555 112221 111245566677888887653 4444444433
No 361
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.99 E-value=2.4 Score=25.30 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=12.2
Q ss_pred HHHHHhhcCChHHHHHHHHHHHH
Q 038112 579 TLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 579 l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
++.+|...|+.+.|.+++++.+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44455555555555555555554
No 362
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.75 E-value=8.5 Score=33.21 Aligned_cols=21 Identities=19% Similarity=-0.039 Sum_probs=14.1
Q ss_pred HHHHHccCChhHHHHHHHhhc
Q 038112 9 LNLLKAEKNPHTALALFDSAT 29 (625)
Q Consensus 9 ~~~l~~~~~~~~A~~~~~~~~ 29 (625)
++=|..+|++.+|..-|+.|+
T Consensus 185 GN~lfk~~~ykEA~~~YreAi 205 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAI 205 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHH
Confidence 455667777877777776653
No 363
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.33 E-value=5.3 Score=25.09 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=17.8
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCHH
Q 038112 542 NTLMDGLFKTGDCDKALEIWNHILEERLRPDII 574 (625)
Q Consensus 542 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 574 (625)
..++-++.+.|++++|.++.+.+++ +.|+..
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 3455556666666666666666666 566543
No 364
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.10 E-value=1.9 Score=22.84 Aligned_cols=26 Identities=38% Similarity=0.572 Sum_probs=12.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 541 YNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 541 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
+..++.++...|+++.|...++..++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33444444444455555544444443
No 365
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.08 E-value=7.1 Score=24.53 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=30.8
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038112 576 YNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAV 618 (625)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 618 (625)
...+.-++.+.|++++|.++++.+++ +.|+......|-...
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHHH
Confidence 45567789999999999999999996 568877666655544
No 366
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=84.06 E-value=18 Score=28.09 Aligned_cols=70 Identities=7% Similarity=0.059 Sum_probs=36.7
Q ss_pred ChhhHHHHHHHHHhcC---CHHHHHHHHHHHHH-CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 038112 240 DSFTYCSFIHGLCKAG---NVEGAERVYREMVE-SGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLN 309 (625)
Q Consensus 240 ~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 309 (625)
+..+-..+..++.+.. +..+.+.+++++.+ ..+.........+.-++.+.++++.++.+.+.+.+..|.+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 3444444555555443 34455666666664 2222233444455556666666666666666665554443
No 367
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.75 E-value=3.6 Score=28.18 Aligned_cols=48 Identities=13% Similarity=0.274 Sum_probs=31.3
Q ss_pred ccCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCChHHHHHHHH
Q 038112 550 KTGDCDKALEIWNHILEERLRPD--IISYNITLKGLCSCSRMSDAFEFLN 597 (625)
Q Consensus 550 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 597 (625)
...+.++|+..|++++++-..|. ..++..++.+|+..|++.+++++.-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888888777433332 1455666677777788777766543
No 368
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.48 E-value=14 Score=26.56 Aligned_cols=46 Identities=15% Similarity=0.157 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 521 DALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 521 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
++.+-++.+...+..|++.+....+++|.+.+|+.-|+++++.+..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555555666666666666666666666666666665553
No 369
>PRK10941 hypothetical protein; Provisional
Probab=83.46 E-value=8.2 Score=34.66 Aligned_cols=62 Identities=13% Similarity=-0.083 Sum_probs=35.0
Q ss_pred HhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch
Q 038112 47 RLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI 109 (625)
Q Consensus 47 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 109 (625)
++.+.++++.|.++.+.++...|. ++.-+.--+-.|.+.|.+..|..=++...+.-|..+.+
T Consensus 190 ~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 190 ALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 455566666666666666665432 44444444555666666666666666655555555554
No 370
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=83.22 E-value=1.4 Score=41.93 Aligned_cols=95 Identities=9% Similarity=-0.100 Sum_probs=63.2
Q ss_pred HHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchH
Q 038112 12 LKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDK 91 (625)
Q Consensus 12 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 91 (625)
.+..++++.|+..|-.++..+ |..+..+.....++.+.+++..|..=+..+++.. |.....|..-+.++.+.+.+.+
T Consensus 14 ~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHHH
Confidence 345567777887777777776 6666666666677777777777777777777765 3344455555556666667777
Q ss_pred HHHHHHHhHHhhCCCcch
Q 038112 92 ALDVFQRMNEIFGCEAGI 109 (625)
Q Consensus 92 A~~~~~~~~~~~~~~~~~ 109 (625)
|+..|+......|..+.+
T Consensus 91 A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHhhhcCcCcHHH
Confidence 777777665555555544
No 371
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.92 E-value=1 Score=40.68 Aligned_cols=118 Identities=10% Similarity=-0.003 Sum_probs=75.7
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChhHH
Q 038112 479 CQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN-LVTYNTLMDGLFKTGDCDKA 557 (625)
Q Consensus 479 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A 557 (625)
...|.++.|++.|...+..+ ++....|..-..++.+.+.+..|++=+...... .|| ..-|-.-..+....|++++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHH
Confidence 45677888888887777764 445666666677777788888888877777764 344 33444555566667888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 558 LEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 558 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
...+..+.+.++.+... ..+-...-+.+..++-...+++.++
T Consensus 202 a~dl~~a~kld~dE~~~--a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANS--ATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHhccccHHHH--HHHHHhccchhhhhhchhHHHHHHH
Confidence 88888888755544332 3333444455555555555555553
No 372
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=82.73 E-value=36 Score=30.64 Aligned_cols=138 Identities=12% Similarity=0.195 Sum_probs=77.4
Q ss_pred cCChhhHHHHHHHHHh-CCCCCCchhhHHHHHHHHh-cC-ChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhh
Q 038112 148 SGDLLGALAVFDEMFE-RGVETNVVCYNILIDGFFK-KG-DYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDE 224 (625)
Q Consensus 148 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 224 (625)
+....+|+.+|+..-. ..+--|..+...+++.... .+ ....-.++.+-+....+..++..+....+..++..+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3344556666652111 1123356666666666554 22 2222233444444443345566667777788888888888
Q ss_pred HHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH-----HHHCCCCcCHHHHHHHHHH
Q 038112 225 CLEMWDRMKKN-EREKDSFTYCSFIHGLCKAGNVEGAERVYRE-----MVESGIFVDAVTYNAMIDG 285 (625)
Q Consensus 225 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~ 285 (625)
-.++++..... ++..|...|..++......|+..-...+.++ +.+.++..+...-..+-+.
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L 287 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL 287 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence 88877776654 4556777788888888888887655555443 1233444444444444333
No 373
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=81.53 E-value=21 Score=31.70 Aligned_cols=89 Identities=16% Similarity=0.125 Sum_probs=60.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--
Q 038112 473 LLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK-- 550 (625)
Q Consensus 473 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 550 (625)
.-|.+++..+++.+++...-+.-+..-+..+.+...-|-.|.+.+.+..+.++-.......-.-+...|..++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 446788888999888877666554322223556666677788999999888888887764111123346666665554
Q ss_pred ---cCChhHHHHHH
Q 038112 551 ---TGDCDKALEIW 561 (625)
Q Consensus 551 ---~g~~~~A~~~~ 561 (625)
.|.+++|.++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 78888888876
No 374
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=81.19 E-value=48 Score=31.04 Aligned_cols=59 Identities=5% Similarity=-0.082 Sum_probs=27.8
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 038112 260 AERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRG 319 (625)
Q Consensus 260 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 319 (625)
-+.+++++++.++ .+...+..++..+.+..+.++..+.|+.+....+.+...|...+..
T Consensus 50 klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 50 KLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 3444455444432 2444444444555555555555555555555444444444444443
No 375
>PRK10941 hypothetical protein; Provisional
Probab=80.74 E-value=31 Score=31.13 Aligned_cols=75 Identities=15% Similarity=0.047 Sum_probs=39.3
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 038112 543 TLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALCR-GILPTTITWHILVRAVM 619 (625)
Q Consensus 543 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 619 (625)
.+-.+|.+.++++.|+.+.+.++. +.| ++.-+..-+-.|.+.|.+..|..-++..++. .-.|+.......+..+.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 444455566666666666666665 455 3344444555566666666666666655532 23344444444444443
No 376
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=80.48 E-value=34 Score=31.17 Aligned_cols=23 Identities=26% Similarity=0.118 Sum_probs=10.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 038112 176 LIDGFFKKGDYMRAKEIWERLVM 198 (625)
Q Consensus 176 l~~~~~~~g~~~~a~~~~~~~~~ 198 (625)
++-+..+.|+..+|.+.++.+.+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhh
Confidence 33333444444444444444443
No 377
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.06 E-value=61 Score=31.53 Aligned_cols=331 Identities=12% Similarity=0.038 Sum_probs=163.5
Q ss_pred HHHHHH-HccCChhHHHHHHHhhccCCCCCCCH-----HHHHHHHHHhhCCC-ChhHHHHHHHHHHHhcCCC---CHHHH
Q 038112 7 RLLNLL-KAEKNPHTALALFDSATREPGYAHSP-----HLFHHILRRLIDPK-LVVHVSRILELIEIQKCYC---PEDVA 76 (625)
Q Consensus 7 ~l~~~l-~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~---~~~~~ 76 (625)
+|+.+| ....+++.|...++.+......-|+. .++..++..+.... .+..+..++++.+...-.. .-...
T Consensus 51 qLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckll 130 (629)
T KOG2300|consen 51 QLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLL 130 (629)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHH
Confidence 456555 57899999999999775433212222 45666777777654 8999999999998754222 22355
Q ss_pred HHHHHHHHccCCchHHHHHHHHhHHhhCCCcch--------------hhhcCC---hHHHHHHHHHHHHCCCCCCHhH--
Q 038112 77 LSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI--------------LCRKRQ---FEKAKRFLNSLWEKGLKPDVYS-- 137 (625)
Q Consensus 77 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------------~~~~~~---~~~A~~~~~~~~~~~~~~~~~~-- 137 (625)
..+++.+.-..++..|.+++.--.. +...... +..+.+ ...+.....++.+. ..+|..-
T Consensus 131 fQLaql~~idkD~~sA~elLavga~-sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E 208 (629)
T KOG2300|consen 131 FQLAQLHIIDKDFPSALELLAVGAE-SADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKE 208 (629)
T ss_pred HHHHHHHhhhccchhHHHHHhcccc-ccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHH
Confidence 6788899999999999998653211 1111000 222233 44444455555554 2444321
Q ss_pred ----HHHH--HHHHHhcCChhhHHHHHHHHHhC---CCC------------CCchhhHHHHH-------------HHHhc
Q 038112 138 ----YGTV--INGLVKSGDLLGALAVFDEMFER---GVE------------TNVVCYNILID-------------GFFKK 183 (625)
Q Consensus 138 ----~~~l--~~~~~~~~~~~~a~~~~~~~~~~---~~~------------~~~~~~~~l~~-------------~~~~~ 183 (625)
|... +.-|.-.|+...+...++++.+. +.+ |.+..+..+.+ .-...
T Consensus 209 ~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~ 288 (629)
T KOG2300|consen 209 MLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPA 288 (629)
T ss_pred HHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhh
Confidence 2222 23344567777777776665432 211 22222222211 00122
Q ss_pred CChhHHHHHHHHHHhCCC---CCC-CcchHH--------HHHHHHHhcCChhhHHHHHHHHHhCCC-CCCh--------h
Q 038112 184 GDYMRAKEIWERLVMETS---VYP-NVVTYN--------VMINGLCKCGRFDECLEMWDRMKKNER-EKDS--------F 242 (625)
Q Consensus 184 g~~~~a~~~~~~~~~~~~---~~~-~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--------~ 242 (625)
|-+++|.+.-+++..... ..+ ....++ .++.+-.-.|++.+|++-+..|.+.-. .|.+ .
T Consensus 289 gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ 368 (629)
T KOG2300|consen 289 GYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQ 368 (629)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHH
Confidence 444444444333332110 001 111111 122233346777777776666654211 1221 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-------HHHH
Q 038112 243 TYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVT--YNAMIDGFCRAGKIKECFELWEVMGRKGCLN-------VVSY 313 (625)
Q Consensus 243 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~ 313 (625)
....+...++..+.++.|..-|....+.--..|... -..+...|.+.|+.+.-.++++.+...+..+ ...+
T Consensus 369 ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~ 448 (629)
T KOG2300|consen 369 IHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASIL 448 (629)
T ss_pred HHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHH
Confidence 112223334455667777776666655422222222 2334556666666555555554443322110 1112
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112 314 NILIRGLLENGKVDEAISIWELLREK 339 (625)
Q Consensus 314 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (625)
..-+-.....+++.+|...+.+-++.
T Consensus 449 ~v~glfaf~qn~lnEaK~~l~e~Lkm 474 (629)
T KOG2300|consen 449 YVYGLFAFKQNDLNEAKRFLRETLKM 474 (629)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 22222233566777777766665543
No 378
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.02 E-value=22 Score=32.13 Aligned_cols=104 Identities=18% Similarity=0.164 Sum_probs=48.1
Q ss_pred CCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCh
Q 038112 164 RGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETS--VYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDS 241 (625)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 241 (625)
.|.+.++.+...++..-....+.+.++..+-++..... ..++. +-...++.+. .-+.++++.++..=++.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 34444444444444444445556666665555443210 01111 1112222222 22344555555544555555555
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038112 242 FTYCSFIHGLCKAGNVEGAERVYREMVE 269 (625)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 269 (625)
.+++.++..+.+.+++..|.++...|..
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5555555555555555555555554443
No 379
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.99 E-value=19 Score=30.67 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=21.2
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038112 214 NGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYR 265 (625)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 265 (625)
..+.+.+...+++...+.-.+..+ .+...-..+++.++-.|++++|..-++
T Consensus 9 seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHH
Confidence 334444444444444443333322 233333444444444444444444433
No 380
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=79.33 E-value=4.9 Score=38.45 Aligned_cols=105 Identities=15% Similarity=0.161 Sum_probs=64.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccC
Q 038112 475 INGLCQSKKIDMALKLCCQFLQKGFTPD-VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN-LVTYNTLMDGLFKTG 552 (625)
Q Consensus 475 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 552 (625)
+......+.++.|..++.++++. .|+ +..|..-..++.+.+++..|+.=+.++++.. |. ...|..-+.++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 44455667777777777777775 444 3333334466677777777777777766642 32 444545555666666
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 038112 553 DCDKALEIWNHILEERLRPDIISYNITLKGLCS 585 (625)
Q Consensus 553 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 585 (625)
.+.+|...|+.... +.|+..-....+.-|-+
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 77777777777666 67766655555554443
No 381
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.25 E-value=2.6 Score=22.24 Aligned_cols=24 Identities=4% Similarity=-0.212 Sum_probs=10.2
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHH
Q 038112 43 HILRRLIDPKLVVHVSRILELIEI 66 (625)
Q Consensus 43 ~l~~~~~~~~~~~~a~~~~~~~~~ 66 (625)
.++..+...|+++.|...++..++
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHc
Confidence 333444444444444444444443
No 382
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=79.19 E-value=52 Score=33.18 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=8.1
Q ss_pred CCcchHHHHHHHHHh
Q 038112 204 PNVVTYNVMINGLCK 218 (625)
Q Consensus 204 ~~~~~~~~l~~~~~~ 218 (625)
|...+|..+..++.+
T Consensus 409 ~s~~iwle~~~~~l~ 423 (547)
T PF14929_consen 409 PSHPIWLEFVSCFLK 423 (547)
T ss_pred CCchHHHHHHHHHHh
Confidence 555555555555555
No 383
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=79.04 E-value=84 Score=32.51 Aligned_cols=121 Identities=16% Similarity=0.121 Sum_probs=83.5
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH
Q 038112 442 GLCKVERFGEAYSFVKEMLEKGWKPDMI--TYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKV 519 (625)
Q Consensus 442 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 519 (625)
++..-|+-++|..+.++|.... .|-.. -...+..+|+-.|+.....+++.-.... +..|+.-...+.-++.-..++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 3445577778888999988642 22211 2345567788888887777777665543 355666666666777788899
Q ss_pred HHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 520 EDALQLYSNMKKRNCVPNLV--TYNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 520 ~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
+....+..-+.+. ..|... +-..|+-+|+-.|+ .+|+.+++.|..
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 9999998888876 344433 33466777777776 679999999886
No 384
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=79.03 E-value=13 Score=31.86 Aligned_cols=59 Identities=8% Similarity=-0.034 Sum_probs=42.8
Q ss_pred HHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCC
Q 038112 10 NLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCY 70 (625)
Q Consensus 10 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 70 (625)
..+.+.++.+.|...|.+++..- |.....|..++..-.+.|+++.|.+.|++.++.+++
T Consensus 3 ~~~~~~~D~~aaaely~qal~la--p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELA--PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcC--chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 34556777777777777777665 677777777777777777777777777777777643
No 385
>PRK09687 putative lyase; Provisional
Probab=78.93 E-value=52 Score=30.04 Aligned_cols=137 Identities=14% Similarity=0.088 Sum_probs=87.1
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038112 432 TVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSK-KIDMALKLCCQFLQKGFTPDVTMYNILI 510 (625)
Q Consensus 432 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 510 (625)
+..+-...+.++.+.++ .+++..+-.+.+ .++...-...+.++...+ +...+...+..++. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 55555566667777765 456666666665 344455555555555543 24456666666664 45666777777
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 038112 511 HGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLC 584 (625)
Q Consensus 511 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 584 (625)
.++.+.|+ ..|...+-+..+.+ + .....+.++...|+. +|+..+..+.+ -.||..+-...+.+|.
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~--~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY--KFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh--hCCChhHHHHHHHHHh
Confidence 88888887 46666666666542 2 234677777788885 68888888887 4567776666665553
No 386
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=78.35 E-value=18 Score=27.58 Aligned_cols=46 Identities=15% Similarity=0.194 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 521 DALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 521 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
+..+-++.+...++.|++.+...-+++|.+.+|+..|.++++-+..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444555555666777777777777777777777777777776655
No 387
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=77.88 E-value=74 Score=31.26 Aligned_cols=182 Identities=11% Similarity=0.075 Sum_probs=114.1
Q ss_pred CCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 038112 203 YPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAM 282 (625)
Q Consensus 203 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 282 (625)
+-|.....+++..+..+..+.-...+..+|..-|- +...|..++++|... ..++-..+++++.+..+. |...-..+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 34555666777778777777777788888877653 566677788888777 557777888888776543 44444455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHH
Q 038112 283 IDGFCRAGKIKECFELWEVMGRKGCL------NVVSYNILIRGLLENGKVDEAISIWELLREK-NCNADSTTHGVLINGL 355 (625)
Q Consensus 283 ~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 355 (625)
+..|.+ ++.+.+..+|..+...-.+ -...|..+.... ..+.+....+..++... |...-...+..+..-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 555544 7777777777776654333 223455444321 33455566655555543 2222333444455667
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhh
Q 038112 356 CKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDK 391 (625)
Q Consensus 356 ~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~ 391 (625)
....++++|+.++..+.+....+...-..+++.+..
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 778888888888888777776665555555554443
No 388
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.82 E-value=8 Score=28.05 Aligned_cols=56 Identities=11% Similarity=-0.093 Sum_probs=36.5
Q ss_pred HccCChhHH----HHHHHhhccCCCCC---CCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhc
Q 038112 13 KAEKNPHTA----LALFDSATREPGYA---HSPHLFHHILRRLIDPKLVVHVSRILELIEIQK 68 (625)
Q Consensus 13 ~~~~~~~~A----~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 68 (625)
.+.|++..| .+.|+......... .-..+...++......|++++|...++++++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 356788888 45555544433222 124555566777778899999999988888753
No 389
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=77.80 E-value=46 Score=28.83 Aligned_cols=88 Identities=16% Similarity=0.193 Sum_probs=52.4
Q ss_pred cCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHcCCCHH-------HHHHHHHHHHhCCCCC-----CHHHHH
Q 038112 481 SKKIDMALKLCCQFLQ----KGFTPD--VTMYNILIHGLCSAGKVE-------DALQLYSNMKKRNCVP-----NLVTYN 542 (625)
Q Consensus 481 ~~~~~~A~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~~~-----~~~~~~ 542 (625)
...++.|.+.+.-++- .+.++. ...+..+++.|...|+.+ .|.+.|.+.....-.| +..+..
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 3445555554443331 122333 345566677777777743 4555665555442111 244556
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcC
Q 038112 543 TLMDGLFKTGDCDKALEIWNHILEER 568 (625)
Q Consensus 543 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 568 (625)
.++....+.|+.++|.+.|.+++..+
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 67778888999999999999988754
No 390
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=76.39 E-value=1e+02 Score=32.12 Aligned_cols=17 Identities=12% Similarity=0.348 Sum_probs=11.0
Q ss_pred HhhcCChHHHHHHHHHH
Q 038112 583 LCSCSRMSDAFEFLNDA 599 (625)
Q Consensus 583 ~~~~g~~~~A~~~~~~~ 599 (625)
+++.|++++|++.++++
T Consensus 515 ~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHTT-HHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHhC
Confidence 45667777777777666
No 391
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=76.35 E-value=26 Score=25.18 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=15.7
Q ss_pred CchhhHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038112 169 NVVCYNILIDGFFKKGDYMRAKEIWERLVMET 200 (625)
Q Consensus 169 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 200 (625)
|......+...+...|++++|++.+-.+++..
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44455555555555555555555555555443
No 392
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.42 E-value=1.1e+02 Score=31.96 Aligned_cols=103 Identities=15% Similarity=0.195 Sum_probs=52.1
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 038112 213 INGLCKCGRFDECLEMWDRMKKNERE-KDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGK 291 (625)
Q Consensus 213 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (625)
+.-+.+.+.+++|++..+.....-.. .-.......+..+...|++++|-...-.|... +..-|......+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 44555666677776666554322110 02234555666666677777776666666543 44555555555555554
Q ss_pred HHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHh
Q 038112 292 IKECFELWEVMGRKGCL-NVVSYNILIRGLLE 322 (625)
Q Consensus 292 ~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 322 (625)
...... -+....+. .+..|..++..+..
T Consensus 439 l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 333221 12222221 55566665555554
No 393
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=75.07 E-value=5.4 Score=35.51 Aligned_cols=69 Identities=9% Similarity=-0.038 Sum_probs=54.5
Q ss_pred HhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCCh
Q 038112 47 RLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQF 116 (625)
Q Consensus 47 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 116 (625)
-..+.|+.+.|.++|+.+++.. |.+++++..++...-..++.-+|-.+|-+++...|.+..++....+.
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlala-P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALA-PTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcC-CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3457888899999999998886 45788888888888778888888888888888888888886655443
No 394
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=75.04 E-value=8 Score=25.31 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 038112 572 DIISYNITLKGLCSCSRMSDAFEFLNDAL 600 (625)
Q Consensus 572 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (625)
|..-...++.+|...|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444455556666666666666666554
No 395
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=74.73 E-value=49 Score=30.43 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=24.7
Q ss_pred hccCCHHHHHHHHHHHHhC---CCCCCHHHH--HHHHHHHHcCCCHHHHHHHHHHHHh
Q 038112 479 CQSKKIDMALKLCCQFLQK---GFTPDVTMY--NILIHGLCSAGKVEDALQLYSNMKK 531 (625)
Q Consensus 479 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 531 (625)
.+.++.++|+++++++.+. .-.|+...| ...++++...|+..++.+.+....+
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3444555565555555442 112333333 2233444455555555555555544
No 396
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=74.30 E-value=25 Score=32.10 Aligned_cols=96 Identities=18% Similarity=0.097 Sum_probs=51.2
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038112 470 TYSLLINGLCQSKKIDMALKLCCQFLQKG---FTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMD 546 (625)
Q Consensus 470 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 546 (625)
.|.-=++-|.+.+++..|...|.+-++.. ...+...|+.-..+-...|++..|+.=....+... +.....+..-+.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRGAK 161 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhhhH
Confidence 44445555666666666666666655431 11224455555555555566666666665555531 223445555555
Q ss_pred HHHccCChhHHHHHHHHHHH
Q 038112 547 GLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 547 ~~~~~g~~~~A~~~~~~~~~ 566 (625)
++....++++|....++.+.
T Consensus 162 c~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 55666666666655555433
No 397
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=74.18 E-value=73 Score=29.36 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHH
Q 038112 326 VDEAISIWELLREKNCNADSTTHGV 350 (625)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~~~~ 350 (625)
+++.+.+++.+.+.|+.-+..++..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHH
Confidence 3455667788888888766655544
No 398
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.96 E-value=49 Score=28.37 Aligned_cols=77 Identities=21% Similarity=0.198 Sum_probs=56.7
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 038112 470 TYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRN--CVPNLVTYNTLMDG 547 (625)
Q Consensus 470 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~ 547 (625)
|....+..+.+.+...+++...+.-++.. +.|...-..+++.++-.|+|++|..-++-.-+.. ..+-..+|..++++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34555667788899999999998888763 4466677778899999999999998887776631 22335566666654
No 399
>PRK12798 chemotaxis protein; Reviewed
Probab=72.66 E-value=92 Score=29.87 Aligned_cols=197 Identities=11% Similarity=0.036 Sum_probs=121.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-hccCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHhccCCH
Q 038112 410 QASKLENAIFLFKEMSRKGCSPTVVSYNTLINGL-CKVERFGEAYSFVKEMLEKGWKPDM----ITYSLLINGLCQSKKI 484 (625)
Q Consensus 410 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~ 484 (625)
-.|+.+++.+.+..+.....++....+-.|+.+- ....+...|+.+|+...-. .|.. ..+..-+....+.|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence 3688999999999888776777777777777664 4567899999999987653 4443 2445555667888999
Q ss_pred HHHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChhHHHHH
Q 038112 485 DMALKLCCQFLQK-GFTPDVT-MYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN--LVTYNTLMDGLFKTGDCDKALEI 560 (625)
Q Consensus 485 ~~A~~~~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 560 (625)
+++..+-.+.... ...|-.. .+..+...+.+.++-..- .-+..+... +.|+ ..+|..+.+.-.-.|+.+-|.-.
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9887776666553 1122222 223333444444322222 224444433 3333 56888899999999999999999
Q ss_pred HHHHHHcCCCCCH-HHHHHHHH--HHhhcCChHHHHHHHHHHHHCCCCCCHHH
Q 038112 561 WNHILEERLRPDI-ISYNITLK--GLCSCSRMSDAFEFLNDALCRGILPTTIT 610 (625)
Q Consensus 561 ~~~~~~~~~~p~~-~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 610 (625)
-+++....-..+. ..-..+.. +-.-..+++++.+.+..+-...+.|....
T Consensus 280 s~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~ 332 (421)
T PRK12798 280 SERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRA 332 (421)
T ss_pred HHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHH
Confidence 8888874211111 11111212 22234668888888887766566665543
No 400
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=72.56 E-value=33 Score=26.23 Aligned_cols=49 Identities=8% Similarity=0.132 Sum_probs=35.2
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038112 260 AERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL 308 (625)
Q Consensus 260 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 308 (625)
..+-++.+...++.|++.+...-++++-+.+++..|..+|+.+......
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~ 116 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGA 116 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccc
Confidence 3444555566667788888888888888888888888888877765444
No 401
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.41 E-value=5.5 Score=36.25 Aligned_cols=118 Identities=18% Similarity=0.141 Sum_probs=77.8
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHH
Q 038112 444 CKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPD-VTMYNILIHGLCSAGKVEDA 522 (625)
Q Consensus 444 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A 522 (625)
...|.++.|++.+...+..+ ++....+..-..++.+.+++..|++-+....+. .|| ..-|-.-..+-...|+|++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHH
Confidence 35688888998888888752 445566666677788888888888888877774 344 23333334444567889999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 523 LQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
...+....+.++.+... ..+-...-..+..++-...+++..+
T Consensus 202 a~dl~~a~kld~dE~~~--a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANS--ATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHhccccHHHH--HHHHHhccchhhhhhchhHHHHHHH
Confidence 99888888876544333 3344444455555665556666555
No 402
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.33 E-value=1e+02 Score=30.18 Aligned_cols=277 Identities=7% Similarity=-0.046 Sum_probs=147.5
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHH--HHHHhHHhhCC-------Cc-------
Q 038112 44 ILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALD--VFQRMNEIFGC-------EA------- 107 (625)
Q Consensus 44 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~~~-------~~------- 107 (625)
....-..++.++...+.+..+...+....+..++..+..|.+.|....-.. -++.+...... ..
T Consensus 23 ~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~ 102 (696)
T KOG2471|consen 23 QAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVM 102 (696)
T ss_pred HHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHH
Confidence 333444677888888888888887755555556666666777775543321 22222110000 00
Q ss_pred -----chhhhcCChHHHHHHHHHHHHCCCCCCHh-----HHHHHHHHHHhcCChhhHH---HHHHHHHhCC---------
Q 038112 108 -----GILCRKRQFEKAKRFLNSLWEKGLKPDVY-----SYGTVINGLVKSGDLLGAL---AVFDEMFERG--------- 165 (625)
Q Consensus 108 -----~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~--------- 165 (625)
-.++....+..|.++......+- .|-.. ........+....+.++|+ .++++++..+
T Consensus 103 ~yn~aVi~yh~~~~g~a~~~~~~lv~r~-e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~ 181 (696)
T KOG2471|consen 103 DYNFAVIFYHHEENGSAMQLSSNLVSRT-ESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHI 181 (696)
T ss_pred hhhhheeeeeHhhcchHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 00555666777776665554331 11010 0111112233344444444 3444444321
Q ss_pred --------CCCCc------------hhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhH
Q 038112 166 --------VETNV------------VCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDEC 225 (625)
Q Consensus 166 --------~~~~~------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 225 (625)
.+|.. .....-++.+.+..+...+..-.+...... ..+......--..+.-.|++.+|
T Consensus 182 ~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a--~~s~~~l~LKsq~eY~~gn~~kA 259 (696)
T KOG2471|consen 182 PANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIA--QDSSMALLLKSQLEYAHGNHPKA 259 (696)
T ss_pred chhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhc--CCCcHHHHHHHHHHHHhcchHHH
Confidence 01111 111112233344444444433333322221 11122222223456678999999
Q ss_pred HHHHHHHHhC---CCCCChh-----hHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCcC----------HHHHH
Q 038112 226 LEMWDRMKKN---EREKDSF-----TYCSFIHGLCKAGNVEGAERVYREMVE-------SGIFVD----------AVTYN 280 (625)
Q Consensus 226 ~~~~~~~~~~---~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~----------~~~~~ 280 (625)
.+++...--. |...++. .|+.+.-.+.+.|.+.-+..+|...++ .|++|. .....
T Consensus 260 ~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilY 339 (696)
T KOG2471|consen 260 MKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILY 339 (696)
T ss_pred HHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHH
Confidence 9887654321 2111211 246666677788889999999988874 344432 23344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhC
Q 038112 281 AMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLEN 323 (625)
Q Consensus 281 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (625)
...-.|...|++-.|.+.|.+.......++..|..+..+|...
T Consensus 340 NcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 340 NCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5566778889999999999998887777999999999998754
No 403
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.98 E-value=68 Score=28.07 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH
Q 038112 505 MYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI 573 (625)
Q Consensus 505 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 573 (625)
.+....+++...|++-++++.-..+.+. .+.|...|..-+++.+..=+.++|..-|..+++ +.|..
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~-~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~--ldpsl 297 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRH-HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE--LDPSL 297 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh--cChhh
Confidence 4445567777888999999998888887 466788888888888888899999999999988 66644
No 404
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.12 E-value=78 Score=28.39 Aligned_cols=90 Identities=13% Similarity=0.069 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHh
Q 038112 139 GTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCK 218 (625)
Q Consensus 139 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (625)
..-|++++..+++.+++...-+-...--+..+.+...-+-.|.+.|....+.++-.......+ ..+...|..+++.|..
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHH
Confidence 344677777888887766655544331122233444445567778888877777777666542 2223346666665554
Q ss_pred -----cCChhhHHHHH
Q 038112 219 -----CGRFDECLEMW 229 (625)
Q Consensus 219 -----~g~~~~a~~~~ 229 (625)
.|.+++|.++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 58888888776
No 405
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=70.36 E-value=83 Score=28.36 Aligned_cols=158 Identities=15% Similarity=0.149 Sum_probs=73.2
Q ss_pred ccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHH----HHCCCCCCHhHHHHHHHHHHhcCChh-hHHHHHH
Q 038112 85 KNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSL----WEKGLKPDVYSYGTVINGLVKSGDLL-GALAVFD 159 (625)
Q Consensus 85 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~ 159 (625)
+++++++|++++..--. .+.+.|++..|.++..-+ .+.+.+.+......++..+...+.-+ +-.++.+
T Consensus 2 ~~kky~eAidLL~~Ga~-------~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~ 74 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGAL-------ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIK 74 (260)
T ss_dssp HTT-HHHHHHHHHHHHH-------HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHH
T ss_pred ccccHHHHHHHHHHHHH-------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 45566666666554311 244555555544433332 33455566666566666555443222 2223333
Q ss_pred HHHh---CC--CCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112 160 EMFE---RG--VETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKK 234 (625)
Q Consensus 160 ~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (625)
.+++ .+ ..-++.....++..+.+.|++.+|+..|-... .++...+..++......|...+.
T Consensus 75 ~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-----~~~~~~~~~ll~~~~~~~~~~e~--------- 140 (260)
T PF04190_consen 75 AAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-----DPSAFAYVMLLEEWSTKGYPSEA--------- 140 (260)
T ss_dssp HHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHHHHHHTSS--H---------
T ss_pred HHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-----ChhHHHHHHHHHHHHHhcCCcch---------
Confidence 3322 11 22366777888888888888888887654221 12222222233333333332222
Q ss_pred CCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038112 235 NEREKDSFTY-CSFIHGLCKAGNVEGAERVYREMVES 270 (625)
Q Consensus 235 ~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 270 (625)
..| ...+--|...++...|...+....+.
T Consensus 141 -------dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 -------DLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -------HHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 222 22233455677888888877766644
No 406
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=70.34 E-value=1.4e+02 Score=30.90 Aligned_cols=25 Identities=16% Similarity=0.076 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHH
Q 038112 73 EDVALSVIQAYGKNSMPDKALDVFQR 98 (625)
Q Consensus 73 ~~~~~~l~~~~~~~~~~~~A~~~~~~ 98 (625)
+.-|. .+..+.-.|.++.|..++..
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 34444 66667788888888888854
No 407
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=69.93 E-value=91 Score=28.66 Aligned_cols=98 Identities=17% Similarity=0.082 Sum_probs=64.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCChhhHHH-HHHHHhccCCHHHHHHHHHHHHHCCCCCCH---
Q 038112 397 NAYTCNSLMNGFIQASKLENAIFLFKEMSR----KGCSPTVVSYNT-LINGLCKVERFGEAYSFVKEMLEKGWKPDM--- 468 (625)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 468 (625)
-...+......|++.|+.+.|.+.+....+ .|.+.|+..+.. +.-.|....-..+-++..+.+++.|-..+.
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 344566777899999999999998887654 355566654433 333355555566777777788887765443
Q ss_pred -hhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 038112 469 -ITYSLLINGLCQSKKIDMALKLCCQFLQ 496 (625)
Q Consensus 469 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 496 (625)
.+|..+- |....++.+|-.+|-+...
T Consensus 183 lKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 183 LKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 2343332 4456788888888877765
No 408
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=69.37 E-value=31 Score=25.01 Aligned_cols=52 Identities=15% Similarity=0.150 Sum_probs=29.1
Q ss_pred cCCCHHHHHHHHHHHHhC----CCCC----CHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 515 SAGKVEDALQLYSNMKKR----NCVP----NLVTYNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 515 ~~g~~~~A~~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
+.|++.+|.+.+.+..+. +... -......++......|++++|...++++++
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 566666665555544432 1111 022333455566677777777777777765
No 409
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.05 E-value=20 Score=24.72 Aligned_cols=47 Identities=13% Similarity=0.161 Sum_probs=27.7
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChhHHHHHH
Q 038112 515 SAGKVEDALQLYSNMKKRNCVPN--LVTYNTLMDGLFKTGDCDKALEIW 561 (625)
Q Consensus 515 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~ 561 (625)
...+.++|+..|.+..+.-..+. ..++..|+.+|..-|++.+.+++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777766522211 234555666666777766666543
No 410
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=68.12 E-value=1e+02 Score=28.51 Aligned_cols=117 Identities=17% Similarity=0.171 Sum_probs=68.1
Q ss_pred ChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHh------cCChhHHHHHHHHHHhCCCCCCCcc-hHHHHHHHHHhcCCh
Q 038112 150 DLLGALAVFDEMFERGVETNVVCYNILIDGFFK------KGDYMRAKEIWERLVMETSVYPNVV-TYNVMINGLCKCGRF 222 (625)
Q Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 222 (625)
-.+++..++++....+. |.+......+.++.. .-++.....+|+.+... .|+.+ +.|.-+ +.....-.
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~---apSPvV~LNRAV-Ala~~~Gp 345 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA---APSPVVTLNRAV-ALAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh---CCCCeEeehHHH-HHHHhhhH
Confidence 35667777777777654 566665555444322 24566667777776664 34443 344433 34444456
Q ss_pred hhHHHHHHHHHhCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038112 223 DECLEMWDRMKKNEREKDSFT-YCSFIHGLCKAGNVEGAERVYREMVESG 271 (625)
Q Consensus 223 ~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 271 (625)
+.++.+.+.+...+--..-.. +..-...+.+.|+.++|..-|++.+...
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La 395 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALA 395 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhc
Confidence 677777777665432112222 2333456677888888888888877653
No 411
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.17 E-value=1.4e+02 Score=29.92 Aligned_cols=157 Identities=16% Similarity=0.073 Sum_probs=93.4
Q ss_pred hcCCHHHHHHHHHHHHhCCC--------CCChh---hHHHHHHHHhccCCHHHHHHHHHHH-------HHCCCCC-----
Q 038112 410 QASKLENAIFLFKEMSRKGC--------SPTVV---SYNTLINGLCKVERFGEAYSFVKEM-------LEKGWKP----- 466 (625)
Q Consensus 410 ~~~~~~~a~~~~~~~~~~~~--------~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~----- 466 (625)
....++++...|.-...... ..++. +...+...+...|+.+.+-.++++. ....+.|
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 44566777777766554210 11222 3444555677778777666555443 3222222
Q ss_pred -------C-HhhHH---HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhC--
Q 038112 467 -------D-MITYS---LLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLC-SAGKVEDALQLYSNMKKR-- 532 (625)
Q Consensus 467 -------~-~~~~~---~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~-- 532 (625)
. ...|. ..+....+.|-+..|.+..+.+......-|+.....++..|+ +..+|+=.+++++.....
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 1 11222 234456788999999999999988755446766677777765 667788777777776543
Q ss_pred -CCCCCHHHHHHHHHHHHccCC---hhHHHHHHHHHHH
Q 038112 533 -NCVPNLVTYNTLMDGLFKTGD---CDKALEIWNHILE 566 (625)
Q Consensus 533 -~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~ 566 (625)
..-||...-..|+..|..... .+.|...+.++..
T Consensus 410 l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 410 LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 234665555567777776655 4556666666554
No 412
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.53 E-value=48 Score=24.20 Aligned_cols=49 Identities=14% Similarity=0.189 Sum_probs=23.5
Q ss_pred hhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 038112 111 CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERG 165 (625)
Q Consensus 111 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 165 (625)
..+|+|++|..+.+.. ..||...|..+-. .+.|-.+.+...+.++...|
T Consensus 50 mNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 50 MNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3445555555444333 2455555555432 34455555555555554443
No 413
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=65.99 E-value=33 Score=30.91 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=34.6
Q ss_pred HHccCCchHHHHHHHHhHHhhCCCcchhhhcCChH-------HHHHHHHHHHHCC
Q 038112 83 YGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFE-------KAKRFLNSLWEKG 130 (625)
Q Consensus 83 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-------~A~~~~~~~~~~~ 130 (625)
..+.|+.+.|..+|+.+....|..+.++.+.|.+. +|-.+|-+++..+
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis 180 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTIS 180 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence 34788999999999998888899998876666554 4455555555443
No 414
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=65.80 E-value=16 Score=19.96 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHH
Q 038112 554 CDKALEIWNHILEERLRPDIISYNI 578 (625)
Q Consensus 554 ~~~A~~~~~~~~~~~~~p~~~~~~~ 578 (625)
++.|..+|++.+. ..|+..+|..
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wik 25 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWIK 25 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHHH
Confidence 4556666666655 4555555443
No 415
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=65.66 E-value=19 Score=19.11 Aligned_cols=27 Identities=15% Similarity=-0.001 Sum_probs=12.5
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 038112 291 KIKECFELWEVMGRKGCLNVVSYNILI 317 (625)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~~~~~~~~l~ 317 (625)
+++.+..+|+.+....+.+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 344445555555444444444444433
No 416
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.61 E-value=19 Score=30.61 Aligned_cols=32 Identities=25% Similarity=0.204 Sum_probs=15.9
Q ss_pred CCCCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 038112 569 LRPDIISYNITLKGLCSCSRMSDAFEFLNDAL 600 (625)
Q Consensus 569 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (625)
..|++.++..++.++...|+.++|.++.+++.
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555555555555555554444
No 417
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=65.22 E-value=7.8 Score=29.83 Aligned_cols=34 Identities=26% Similarity=0.533 Sum_probs=23.1
Q ss_pred HhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038112 583 LCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAV 618 (625)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 618 (625)
..+.|.-.+|..+|++|++.|-.|| .|+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 4445667778888888888876665 466666554
No 418
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=65.06 E-value=29 Score=21.21 Aligned_cols=34 Identities=12% Similarity=0.040 Sum_probs=23.5
Q ss_pred HhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038112 583 LCSCSRMSDAFEFLNDALCRGILPTTITWHILVR 616 (625)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 616 (625)
..+.|-.+++..++++|.+.|+..++..+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666777777777777777777777766554
No 419
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=64.65 E-value=1.2e+02 Score=27.95 Aligned_cols=147 Identities=14% Similarity=0.043 Sum_probs=94.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcc-----C
Q 038112 412 SKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCK----VERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQS-----K 482 (625)
Q Consensus 412 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~ 482 (625)
.+...|..+|....+.|. ......+...|.. ..+..+|..++.++.+.|..+.......+...|..- -
T Consensus 91 ~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 91 RDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred ccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 467889999987776643 3333445555544 448899999999999987654323344444444332 1
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC----
Q 038112 483 --KIDMALKLCCQFLQKGFTPDVTMYNILIHGLCS----AGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTG---- 552 (625)
Q Consensus 483 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 552 (625)
+...|...+.++...+ +......+..+|.. ..++++|..+|.+..+.|. ......+. .+...|
T Consensus 168 ~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~ 240 (292)
T COG0790 168 AYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVK 240 (292)
T ss_pred cHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCch
Confidence 2347899999888876 55566666666643 3488999999999999863 44444555 555554
Q ss_pred -----------ChhHHHHHHHHHHHcC
Q 038112 553 -----------DCDKALEIWNHILEER 568 (625)
Q Consensus 553 -----------~~~~A~~~~~~~~~~~ 568 (625)
+...|...+......+
T Consensus 241 ~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 241 KAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred hhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 5555555555555543
No 420
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=64.63 E-value=1.8e+02 Score=30.09 Aligned_cols=20 Identities=10% Similarity=0.292 Sum_probs=12.2
Q ss_pred HHHHHHHhcCChhHHHHHHH
Q 038112 175 ILIDGFFKKGDYMRAKEIWE 194 (625)
Q Consensus 175 ~l~~~~~~~g~~~~a~~~~~ 194 (625)
..+..+.-.|.++.|.+++.
T Consensus 153 ~~v~~lvlrG~~~~a~~lL~ 172 (566)
T PF07575_consen 153 DYVQRLVLRGLFDQARQLLR 172 (566)
T ss_dssp HHHHHHHHTT-HHHHHHHH-
T ss_pred HHHHHHHHcCCHHHHHHHHH
Confidence 35666666777777777664
No 421
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=63.38 E-value=1.2e+02 Score=27.46 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHH
Q 038112 502 DVTMYNILIHGLCSAGKVEDALQLY 526 (625)
Q Consensus 502 ~~~~~~~l~~~~~~~g~~~~A~~~~ 526 (625)
++.....++..|.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5667777788888888887777655
No 422
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=63.03 E-value=58 Score=29.06 Aligned_cols=60 Identities=17% Similarity=0.074 Sum_probs=34.7
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 038112 540 TYNTLMDGLFKTGDCDKALEIWNHILE----ERLR-PDIISYNITLKGLCSCSRMSDAFEFLNDA 599 (625)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 599 (625)
....++.-|...|++++|.++|+.+.. .|.. +...+...+..++.+.|+.++.+.+.=++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334566667777777777777776643 1211 13344555556666667766666555444
No 423
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.77 E-value=87 Score=31.76 Aligned_cols=59 Identities=10% Similarity=0.202 Sum_probs=27.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 507 NILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 507 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
..+.-+|....+.+.|.++++++.+.+ +.++.+-..+..+....|..++|+........
T Consensus 398 R~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 398 RALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 334444445555555555555555531 22333333344444455555555555544443
No 424
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=62.37 E-value=24 Score=23.11 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 537 NLVTYNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 537 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
|..-...++.++...|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444556666666666666666666554
No 425
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=61.36 E-value=1.8e+02 Score=28.90 Aligned_cols=148 Identities=12% Similarity=0.140 Sum_probs=79.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHH
Q 038112 115 QFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWE 194 (625)
Q Consensus 115 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 194 (625)
.++-...+..+++..| .+--.|..++++|..+ ..+.-..+++++.+..+. |+..-..|+..|.+ ++.+.+...|.
T Consensus 81 k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk-ik~sk~a~~f~ 155 (711)
T COG1747 81 KNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK-IKKSKAAEFFG 155 (711)
T ss_pred HHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH-hchhhHHHHHH
Confidence 3444455555566554 4555666677766666 456666777776666443 33333444444444 66666766666
Q ss_pred HHHhCCCCCCC------cchHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038112 195 RLVMETSVYPN------VVTYNVMINGLCKCGRFDECLEMWDRMKKN-EREKDSFTYCSFIHGLCKAGNVEGAERVYREM 267 (625)
Q Consensus 195 ~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 267 (625)
.+...- -|. ...|..+... --.+.+..+.+...+... |...-...+..+-..|....++.+|++++..+
T Consensus 156 Ka~yrf--I~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~i 231 (711)
T COG1747 156 KALYRF--IPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHI 231 (711)
T ss_pred HHHHHh--cchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 665442 121 0123333321 134555555555555432 22222334444555666777777777777777
Q ss_pred HHCC
Q 038112 268 VESG 271 (625)
Q Consensus 268 ~~~~ 271 (625)
++..
T Consensus 232 l~~d 235 (711)
T COG1747 232 LEHD 235 (711)
T ss_pred hhhc
Confidence 6653
No 426
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=60.24 E-value=1.7e+02 Score=28.52 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=82.2
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhh
Q 038112 145 LVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDE 224 (625)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 224 (625)
....|+...|-+-+....++ .+-++.........+...|+++.+.+.+...... +.....+...++....+.|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHH
Confidence 34567777665544444444 2334555555556677889999998887765443 34455677788888888999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038112 225 CLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESG 271 (625)
Q Consensus 225 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 271 (625)
|...-+-|....++ ++..........-..|-++++...|+++...+
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99988888876654 44444433444455677888888888887654
No 427
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=60.08 E-value=23 Score=30.43 Aligned_cols=53 Identities=19% Similarity=0.082 Sum_probs=30.2
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 038112 479 CQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKR 532 (625)
Q Consensus 479 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 532 (625)
.+.++.+.+.+++.+.... .+.....|..+...-.+.|+.+.|.+.|++..+.
T Consensus 6 ~~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 6 AESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 4455666666666666553 1224555555655555666666666666666653
No 428
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=59.60 E-value=51 Score=26.39 Aligned_cols=59 Identities=10% Similarity=0.151 Sum_probs=44.4
Q ss_pred ccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCC
Q 038112 29 TREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSM 88 (625)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (625)
++..|...++.- ..++..+...+....|.++|+.+.+.+|+.+..+.+..+..+...|-
T Consensus 12 lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 12 LKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 333454455544 45677777787779999999999999888878888888888888773
No 429
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=59.24 E-value=85 Score=31.86 Aligned_cols=115 Identities=18% Similarity=0.164 Sum_probs=75.6
Q ss_pred HHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCch
Q 038112 11 LLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPD 90 (625)
Q Consensus 11 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (625)
.+++++..+.+....+.-+ ++...+......-+..+..-+..++|-.+|+.++.+++ ...+...++.+.+.|-..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 91 (578)
T PRK15490 17 TLKQEKKLAQAVALIDSEL--PTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNN---DEARYEYARRLYNTGLAK 91 (578)
T ss_pred HHHHHhhHHHHHHHHHHhC--CccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCC---cchHHHHHHHHHhhhhhh
Confidence 4567888888888887644 43355555555556677788999999999999999873 267778888888999888
Q ss_pred HHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCC
Q 038112 91 KALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLK 132 (625)
Q Consensus 91 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 132 (625)
.|..++.++-. +.....-...++...-..+++++...+++
T Consensus 92 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (578)
T PRK15490 92 DAQLILKKVSN--GVQKKYNNYLGKINKICDLLERLEGKAIP 131 (578)
T ss_pred HHHHHHHHhCc--cHhHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 88888885511 10000011233444445555555555433
No 430
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=59.10 E-value=1.5e+02 Score=27.79 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 038112 519 VEDALQLYSNMKKRNCVPN----LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLC 584 (625)
Q Consensus 519 ~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 584 (625)
.++...++..++.. -|+ ...|..+++.....|.++.++.+|++++..|..|-.+.-..++..+-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34666666666654 234 34567777777778888888888888888888876655555555544
No 431
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.76 E-value=48 Score=24.03 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhC
Q 038112 56 HVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFG 104 (625)
Q Consensus 56 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 104 (625)
..++.++.+...+-+.++.....|+-.|++.|+.|.|.+-|+.-...+|
T Consensus 55 ~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFP 103 (121)
T COG4259 55 ALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFP 103 (121)
T ss_pred HHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCc
Confidence 3456677777777677778888999999999999999999987644444
No 432
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.56 E-value=85 Score=28.97 Aligned_cols=96 Identities=17% Similarity=0.076 Sum_probs=69.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 038112 243 TYCSFIHGLCKAGNVEGAERVYREMVESG---IFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRG 319 (625)
Q Consensus 243 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 319 (625)
.|.-=.+-|.+..++..|...|.+-++.. ...+...|+.-..+....|++..|+.-........|....++..-..+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 34444566777788888888888876652 223456667767777777888888888888888888888888887888
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 038112 320 LLENGKVDEAISIWELLRE 338 (625)
Q Consensus 320 ~~~~~~~~~a~~~~~~~~~ 338 (625)
+....++.+|....+....
T Consensus 163 ~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 8888888888777666544
No 433
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.33 E-value=59 Score=27.60 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 038112 534 CVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP 571 (625)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 571 (625)
..|++.++..++.++...|+.++|.+...++.. +-|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 357777777777777778888888777777776 555
No 434
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.17 E-value=1.8e+02 Score=28.17 Aligned_cols=53 Identities=25% Similarity=0.305 Sum_probs=27.6
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCch--hhHHHHHHHH--hcCChhHHHHHHHHHHh
Q 038112 145 LVKSGDLLGALAVFDEMFERGVETNVV--CYNILIDGFF--KKGDYMRAKEIWERLVM 198 (625)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~ 198 (625)
+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++.+|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44566666666666666655 443333 2333334333 23455666666665544
No 435
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.01 E-value=1.9e+02 Score=27.93 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=37.3
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHh--ccCCHHHHHHHHHHHHhC
Q 038112 442 GLCKVERFGEAYSFVKEMLEKGWKPDMI--TYSLLINGLC--QSKKIDMALKLCCQFLQK 497 (625)
Q Consensus 442 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~A~~~~~~~~~~ 497 (625)
.+.+.+++..|.+++..+... ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345778888999988888876 554444 3444444443 456778888888877664
No 436
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=55.85 E-value=61 Score=29.44 Aligned_cols=71 Identities=7% Similarity=-0.005 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch--------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 038112 70 YCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI--------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTV 141 (625)
Q Consensus 70 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 141 (625)
+.++..|...+.-..+.|.+.+...+|..+.+.+|.+.++ +...++++.++.+|.+.+..+ +.++..|...
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N-~~~p~iw~ey 182 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN-SRSPRIWIEY 182 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC-CCCchHHHHH
Confidence 4567777777776677778888888888887777777666 445677777777777766655 3444445443
No 437
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=55.14 E-value=1.2e+02 Score=33.85 Aligned_cols=138 Identities=10% Similarity=-0.024 Sum_probs=78.5
Q ss_pred HHHHHHHhhCCCChhHHHH------HHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcC
Q 038112 41 FHHILRRLIDPKLVVHVSR------ILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKR 114 (625)
Q Consensus 41 ~~~l~~~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (625)
....+......|.+.+|.+ ++......-.+.....|..+...+.+.|+.++|..+-.+...
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~i------------- 1001 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACI------------- 1001 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhccccee-------------
Confidence 3444555556666666666 666555444455667778888888888888888877665421
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC-----C--CCCCchhhHHHHHHHHhcCChh
Q 038112 115 QFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER-----G--VETNVVCYNILIDGFFKKGDYM 187 (625)
Q Consensus 115 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~ 187 (625)
+.+++...+.+.+...|..+.......+....|...+.+.... | -|+...++..+-..+...++++
T Consensus 1002 -------i~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d 1074 (1236)
T KOG1839|consen 1002 -------ISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEAD 1074 (1236)
T ss_pred -------eechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHH
Confidence 2222333332334445666655555666666676666665543 1 1222333444444444556666
Q ss_pred HHHHHHHHHHh
Q 038112 188 RAKEIWERLVM 198 (625)
Q Consensus 188 ~a~~~~~~~~~ 198 (625)
.|.+..+.+.+
T Consensus 1075 ~al~~le~A~a 1085 (1236)
T KOG1839|consen 1075 TALRYLESALA 1085 (1236)
T ss_pred HHHHHHHHHHH
Confidence 66666665544
No 438
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=54.93 E-value=43 Score=29.85 Aligned_cols=62 Identities=11% Similarity=-0.131 Sum_probs=33.4
Q ss_pred HhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch
Q 038112 47 RLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI 109 (625)
Q Consensus 47 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 109 (625)
++.+.++.+.|..+.++.+..+|. ++.-..--+..|.+.|.+.-|++-++.....-|..+.+
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~-dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPE-DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCC-ChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 444555666666666666665432 33334444555556666666666555554555554444
No 439
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=54.23 E-value=1e+02 Score=23.95 Aligned_cols=44 Identities=20% Similarity=0.468 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhCCCCCCc-hhhHHHHHHHHhcCChhHHHHHHHHH
Q 038112 153 GALAVFDEMFERGVETNV-VCYNILIDGFFKKGDYMRAKEIWERL 196 (625)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 196 (625)
.+..+|..|...|+-... ..|...+..+...|++++|.++|+..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 778888888877655443 44666777777888888888887653
No 440
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.85 E-value=1.2e+02 Score=30.85 Aligned_cols=87 Identities=15% Similarity=0.247 Sum_probs=67.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC
Q 038112 251 LCKAGNVEGAERVYREMVESGIFVD------AVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENG 324 (625)
Q Consensus 251 ~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 324 (625)
..+..++..+.+.|..-... +..| ......+.-+|....+.+.|.++++++.+.++.++..-..+.......+
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhc
Confidence 34567788888888766553 1212 2345667778889999999999999999998888888888888999999
Q ss_pred CHHHHHHHHHHHHH
Q 038112 325 KVDEAISIWELLRE 338 (625)
Q Consensus 325 ~~~~a~~~~~~~~~ 338 (625)
..++|+........
T Consensus 443 ~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 443 KSEEALTCLQKIKS 456 (872)
T ss_pred chHHHHHHHHHHHh
Confidence 99999888766654
No 441
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.01 E-value=2.5e+02 Score=31.19 Aligned_cols=123 Identities=11% Similarity=0.120 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC----chhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHH
Q 038112 137 SYGTVINGLVKSGDLLGALAVFDEMFERGVETN----VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVM 212 (625)
Q Consensus 137 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 212 (625)
-|..+++.+-+.+-.+.+.++-..+++. ++++ ..+++.+.+.+...|.+.+|...+-. .............+
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~---npdserrrdcLRql 1060 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR---NPDSERRRDCLRQL 1060 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc---CCcHHHHHHHHHHH
Confidence 4677778888888888888888777765 2222 23566677777788888777665432 21011112245566
Q ss_pred HHHHHhcCChhhH------------HH-HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 038112 213 INGLCKCGRFDEC------------LE-MWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERV 263 (625)
Q Consensus 213 ~~~~~~~g~~~~a------------~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 263 (625)
+..++.+|.++.- .. +++..-...+.-....|..|-..+...+++.+|-.+
T Consensus 1061 vivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1061 VIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 6677777765432 22 222221121112223455555556666776665443
No 442
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=52.96 E-value=1.4e+02 Score=25.02 Aligned_cols=68 Identities=15% Similarity=0.090 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHcCCCC--CHHHHHHHHH-----HHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCC
Q 038112 554 CDKALEIWNHILEERLRP--DIISYNITLK-----GLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNGAS 624 (625)
Q Consensus 554 ~~~A~~~~~~~~~~~~~p--~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 624 (625)
.+.|+.+|+.+.+.--.| -......++. .|.+.|.+++|.+++++.. -.|+......-+..+.+.-|.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~---~d~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLF---SDPESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHh---cCCCchhHHHHHHHHHHcccc
No 443
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=52.12 E-value=61 Score=21.24 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=24.6
Q ss_pred hhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-----HhcCChhhHHHHH
Q 038112 111 CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGL-----VKSGDLLGALAVF 158 (625)
Q Consensus 111 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~ 158 (625)
...|+|=+|-++++.+......+....+..+|+.. .+.|+...|..++
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 34566666666666665433233444455555443 3556666665543
No 444
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=51.56 E-value=37 Score=32.58 Aligned_cols=88 Identities=15% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHH-------HHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCc-chh
Q 038112 39 HLFHHILRRLIDPKLVVHVSRILELI-------EIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEA-GIL 110 (625)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~ 110 (625)
.+...+++...-.|++..|+++++.+ ...-++....++..++=+|.-.++|.+|.+.|..++--..... ...
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~ 202 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYH 202 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q ss_pred hhcCChHHHHHHHHHH
Q 038112 111 CRKRQFEKAKRFLNSL 126 (625)
Q Consensus 111 ~~~~~~~~A~~~~~~~ 126 (625)
.+..+++...+.-++|
T Consensus 203 ~~~~q~d~i~K~~eqM 218 (404)
T PF10255_consen 203 QRSYQYDQINKKNEQM 218 (404)
T ss_pred cccchhhHHHhHHHHH
No 445
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=51.02 E-value=25 Score=20.24 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=20.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHhhcc
Q 038112 5 AKRLLNLLKAEKNPHTALALFDSATR 30 (625)
Q Consensus 5 ~~~l~~~l~~~~~~~~A~~~~~~~~~ 30 (625)
...|+.+-...++|+.|+.-|..++.
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35678888888888888888887764
No 446
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=50.38 E-value=90 Score=24.99 Aligned_cols=48 Identities=21% Similarity=0.039 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038112 309 NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLC 356 (625)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 356 (625)
-+.-...++..+...++.-.|.++++.+.+.++..+..|....+..+.
T Consensus 19 ~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~ 66 (145)
T COG0735 19 LTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLE 66 (145)
T ss_pred cCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHH
Confidence 333344444444444444555555555555544444444433333333
No 447
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=50.10 E-value=71 Score=20.95 Aligned_cols=48 Identities=25% Similarity=0.306 Sum_probs=22.2
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHH-----HhcCCHHHHHHH
Q 038112 216 LCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGL-----CKAGNVEGAERV 263 (625)
Q Consensus 216 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~ 263 (625)
+...|++=+|.++++.+-.....+....+..+|+.. .+.|+...|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 344566666666666655433223333444444432 244555555443
No 448
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=48.25 E-value=1.7e+02 Score=24.89 Aligned_cols=65 Identities=6% Similarity=-0.028 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHccCCchHHHHHHHHhHHhhC
Q 038112 39 HLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPED-VALSVIQAYGKNSMPDKALDVFQRMNEIFG 104 (625)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 104 (625)
..+..++..+..+|+++.|-++|.-++... +.|.. .|..-+..+.+.+.-....+.++.+...++
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~ 107 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYP 107 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence 455677888888999999999999999764 44443 555556677777766666678887766555
No 449
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=48.03 E-value=1.2e+02 Score=23.10 Aligned_cols=94 Identities=13% Similarity=-0.039 Sum_probs=50.3
Q ss_pred hhCCCChhHHHHHHHHHHHhc--CCC---------CHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCCh
Q 038112 48 LIDPKLVVHVSRILELIEIQK--CYC---------PEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQF 116 (625)
Q Consensus 48 ~~~~~~~~~a~~~~~~~~~~~--~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 116 (625)
-+..|.+++|..-+..+.... .|+ +...+..|..++...|+|++++.--+..
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~a----------------- 81 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRA----------------- 81 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH-----------------
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHH-----------------
Confidence 345677777777777665532 111 2234456777888899998887766554
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHH----HHHHhcCChhhHHHHHHHHH
Q 038112 117 EKAKRFLNSLWEKGLKPDVYSYGTVI----NGLVKSGDLLGALAVFDEMF 162 (625)
Q Consensus 117 ~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~ 162 (625)
+.+|++--+.. ...-..|...+ .++-..|+.++|+.-|+..-
T Consensus 82 ---L~YFNRRGEL~-qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 82 ---LRYFNRRGELH-QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp ---HHHHHHH--TT-STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ---HHHHhhccccc-cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 33343322221 11222333332 34556788888888887543
No 450
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=47.63 E-value=3.2e+02 Score=27.73 Aligned_cols=21 Identities=10% Similarity=0.283 Sum_probs=13.9
Q ss_pred cCChhhHHHHHHHHHhCCCCC
Q 038112 148 SGDLLGALAVFDEMFERGVET 168 (625)
Q Consensus 148 ~~~~~~a~~~~~~~~~~~~~~ 168 (625)
.++...|+.+++++...|..|
T Consensus 270 ~~d~~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 270 HRETEKAINLINKLYGSSVNL 290 (507)
T ss_pred cCCHHHHHHHHHHHHHcCCCH
Confidence 466777777777777666543
No 451
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=47.33 E-value=4.1e+02 Score=28.94 Aligned_cols=64 Identities=8% Similarity=0.074 Sum_probs=39.3
Q ss_pred CCcchHHHHHHHHHhcCChhhHHHHHHHHHh-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112 204 PNVVTYNVMINGLCKCGRFDECLEMWDRMKK-NEREKDSFTYCSFIHGLCKAGNVEGAERVYREMV 268 (625)
Q Consensus 204 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 268 (625)
.|..++..-..-+...|++..+++++.++.+ .+-.++...|..++..+...|- ......++.+.
T Consensus 1229 ~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw-~H~~t~~~~~~ 1293 (1304)
T KOG1114|consen 1229 SDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW-NHLATFVKNWM 1293 (1304)
T ss_pred CCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc-hHhHHHHhhhe
Confidence 3555666666666777888888888877765 3335566666666666666653 33334444443
No 452
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=46.56 E-value=2.2e+02 Score=25.53 Aligned_cols=138 Identities=12% Similarity=0.098 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038112 469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAG-KVEDALQLYSNMKKRNCVPNLVTYNTLMDG 547 (625)
Q Consensus 469 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 547 (625)
.++...=..+.+...-++|+++....+..+ +.+-.+|..--.++...+ +..+-++++.++... .+.|-.+|..--..
T Consensus 44 ~~m~YfRAI~~~~E~S~RAl~LT~d~i~lN-pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~-npKNYQvWHHRr~i 121 (318)
T KOG0530|consen 44 DVMDYFRAIIAKNEKSPRALQLTEDAIRLN-PANYTVWQYRRVILRHLMSDLNKELEYLDEIIED-NPKNYQVWHHRRVI 121 (318)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhC-cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CccchhHHHHHHHH
Q ss_pred HHccCChh-HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHH
Q 038112 548 LFKTGDCD-KALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTI 609 (625)
Q Consensus 548 ~~~~g~~~-~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (625)
....|++. .-+++.+.|+...-+ +..+|..--+++..-+.++.-+.+..+|++..+..+..
T Consensus 122 ve~l~d~s~rELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSA 183 (318)
T KOG0530|consen 122 VELLGDPSFRELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSA 183 (318)
T ss_pred HHHhcCcccchHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccch
No 453
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=46.50 E-value=2.3e+02 Score=25.82 Aligned_cols=65 Identities=11% Similarity=0.136 Sum_probs=50.2
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCC-cHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 038112 271 GIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRK-GCL-NVVSYNILIRGLLENGKVDEAISIWEL 335 (625)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 335 (625)
+-.++..+...++..+++.+++.+-.+++...... .+. |...|..++......|+..-..++.++
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 34567778888888888888888888888887766 333 888888899988899887766655543
No 454
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=45.35 E-value=1.1e+02 Score=21.78 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=17.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHH
Q 038112 288 RAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVD 327 (625)
Q Consensus 288 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 327 (625)
..|+.+.|.+++..+. . .+..|...+.++...|..+
T Consensus 48 ~~g~~~~ar~LL~~L~-r---g~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-Q---KEGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-c---CCcHHHHHHHHHHHcCchh
Confidence 3455555555555555 2 2334444455555544433
No 455
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.26 E-value=1.2e+02 Score=22.14 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHH
Q 038112 523 LQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISY 576 (625)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 576 (625)
.+.++++...+....+-....|+-.|...|+.+.|.+-|+.=.. +-|.+-+|
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~f 108 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVF 108 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhH
Confidence 33444444443322233334555566666666666666665444 55555444
No 456
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=44.35 E-value=74 Score=19.47 Aligned_cols=34 Identities=9% Similarity=0.157 Sum_probs=22.2
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHH
Q 038112 145 LVKSGDLLGALAVFDEMFERGVETNVVCYNILID 178 (625)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 178 (625)
..+.|-..++...+++|.+.|+..++..+..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666677777777777777666666655543
No 457
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=44.22 E-value=3e+02 Score=26.42 Aligned_cols=57 Identities=9% Similarity=0.038 Sum_probs=36.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh-ccCCHHHHHHHHHHHHH
Q 038112 405 MNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLC-KVERFGEAYSFVKEMLE 461 (625)
Q Consensus 405 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 461 (625)
+..+.+.|-+..|.++.+-+...++.-|+.....+|+.|+ +.++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3455667777777777777777665556666666666654 45666666666665443
No 458
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.02 E-value=1.5e+02 Score=23.00 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChhHHHHHHH
Q 038112 521 DALQLYSNMKKRNCVPN-LVTYNTLMDGLFKTGDCDKALEIWN 562 (625)
Q Consensus 521 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 562 (625)
.+.++|..|...|+... ...|...+..+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444443333222 2333333444444444444444443
No 459
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=43.84 E-value=1.3e+02 Score=22.14 Aligned_cols=17 Identities=18% Similarity=0.481 Sum_probs=7.9
Q ss_pred HHHhcCChhhHHHHHHH
Q 038112 215 GLCKCGRFDECLEMWDR 231 (625)
Q Consensus 215 ~~~~~g~~~~a~~~~~~ 231 (625)
.+...|++++|..+.+.
T Consensus 48 SLmNrG~Yq~Al~l~~~ 64 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNK 64 (115)
T ss_pred HHHccchHHHHHHhcCC
Confidence 34444555555544433
No 460
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=43.68 E-value=1.6e+02 Score=26.95 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=24.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 038112 488 LKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKK 531 (625)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 531 (625)
.++++.+...++.|.-..+.-+.-.+.+.=.+.+.+.+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 34555555555555555555554445555555566666665554
No 461
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.65 E-value=3.5e+02 Score=27.13 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=11.3
Q ss_pred hcCChhhHHHHHHHHHhCCCCC
Q 038112 147 KSGDLLGALAVFDEMFERGVET 168 (625)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~ 168 (625)
+.++.+.|+.++.++...|..|
T Consensus 255 ~~~d~~~Al~~l~~ll~~Gedp 276 (472)
T PRK14962 255 FNGDVKRVFTVLDDVYYSGKDY 276 (472)
T ss_pred HcCCHHHHHHHHHHHHHcCCCH
Confidence 3455555555555555554443
No 462
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=43.58 E-value=1.2e+02 Score=21.63 Aligned_cols=64 Identities=11% Similarity=0.062 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 038112 296 FELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKA 364 (625)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 364 (625)
.+++..+...+..+......+-.+--..|+.+.|.+++..+. +| +..+..++.++...|+-+-|
T Consensus 22 ~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 345555555554444444444333335678888888888887 53 34566677777766665544
No 463
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=42.70 E-value=2.8e+02 Score=25.73 Aligned_cols=95 Identities=16% Similarity=0.105 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCCHHHH-HHHHHHHHccCChhHHHHHHHHHHHcCCCCCHH----
Q 038112 504 TMYNILIHGLCSAGKVEDALQLYSNMKKR----NCVPNLVTY-NTLMDGLFKTGDCDKALEIWNHILEERLRPDII---- 574 (625)
Q Consensus 504 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---- 574 (625)
..+...+..|++-|+-+.|.+.+.+..+. |.+-|...+ ..++-.|....-..+-++..+.+.+.|-.-+..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 44555666777777777777766655443 444443332 233444444444555555556666655433322
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHH
Q 038112 575 SYNITLKGLCSCSRMSDAFEFLNDAL 600 (625)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (625)
+|..+ -|....++.+|-.+|-+.+
T Consensus 185 vY~Gl--y~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 185 VYQGL--YCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHH--HHHHHHhHHHHHHHHHHHc
Confidence 22222 1223466777777766655
No 464
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=41.95 E-value=5.3e+02 Score=28.64 Aligned_cols=60 Identities=13% Similarity=0.063 Sum_probs=32.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 038112 471 YSLLINGLCQSKKIDMALKLCCQFLQKG-FTPDVTMYNILIHGLCSAGKVEDALQLYSNMK 530 (625)
Q Consensus 471 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 530 (625)
....+.+|.-..++++|-+++......- .......+...+-.+...++-+.|...|....
T Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (932)
T PRK13184 807 LVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCR 867 (932)
T ss_pred hHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhcc
Confidence 3445666777778888888775544321 11122333333333445566666666666555
No 465
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=41.32 E-value=4.5e+02 Score=27.72 Aligned_cols=190 Identities=16% Similarity=0.212 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhCCCCCCh---hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHh----------hHHHHHHHHhccC
Q 038112 416 NAIFLFKEMSRKGCSPTV---VSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMI----------TYSLLINGLCQSK 482 (625)
Q Consensus 416 ~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~ 482 (625)
+-...+.+|...--.|++ .+...++-.|....+++...++.+.+..- ||.. .|...++---+-|
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~G 257 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPG 257 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCc
Confidence 334456666654223332 34445555677778888888888887763 3221 1222222223557
Q ss_pred CHHHHHHHHHHHHhCC--CCCCHHH-----HHH--HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 038112 483 KIDMALKLCCQFLQKG--FTPDVTM-----YNI--LIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGD 553 (625)
Q Consensus 483 ~~~~A~~~~~~~~~~~--~~~~~~~-----~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 553 (625)
+-++|+...-.+.+.. +.||... |.- +...|...+..+.|.++|++..+ +.|+...=..++..+...|.
T Consensus 258 DRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 258 DRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE 335 (1226)
T ss_pred cHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh
Confidence 7778887777776642 3444322 111 11223445667788889988887 46665543344444443332
Q ss_pred -hhHHHHH------HHHHHH-cCCCCCHHHHHHHH---HHHhhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 038112 554 -CDKALEI------WNHILE-ERLRPDIISYNITL---KGLCSCSRMSDAFEFLNDALCRGILPTTITWH 612 (625)
Q Consensus 554 -~~~A~~~------~~~~~~-~~~~p~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 612 (625)
++...++ +..++. +|.-.....|..++ .+-.-++++.+|++.-+.|.+ ++|......
T Consensus 336 ~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfK--Lk~P~WYLk 403 (1226)
T KOG4279|consen 336 HFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFK--LKPPVWYLK 403 (1226)
T ss_pred hccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhc--cCCceehHH
Confidence 2222222 111221 12111222222222 222335788999999998875 556544433
No 466
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.22 E-value=3.4e+02 Score=26.18 Aligned_cols=62 Identities=10% Similarity=0.049 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112 278 TYNAMIDGFCRAGKIKECFELWEVMGRKGCL---NVVSYNILIRGLLENGKVDEAISIWELLREK 339 (625)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (625)
.+..+...|..+|+++.|++.|.+...-... ....|..++.+-.-.|+|........+....
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 4455666677777777777777664433222 4455566666666667776666665555443
No 467
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=40.70 E-value=3.1e+02 Score=25.62 Aligned_cols=147 Identities=11% Similarity=0.049 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHCCC----CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 038112 449 FGEAYSFVKEMLEKGW----KPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQ 524 (625)
Q Consensus 449 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 524 (625)
.++|.+.|+.....+. ..+......+.....+.|+.+.-..+++.... .++...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 5677788888777422 23444455556666777776655555555544 3467777788888888888888888
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHHccCC--hhHHHHHHHHHHH---cCCCCCHHHHHHHHHHHhhcCChHHHHHHHHH
Q 038112 525 LYSNMKKRN-CVPNLVTYNTLMDGLFKTGD--CDKALEIWNHILE---ERLRPDIISYNITLKGLCSCSRMSDAFEFLND 598 (625)
Q Consensus 525 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 598 (625)
+++.+...+ +++. ... .++..+...+. .+.+.+++..-.+ ....++......++..+...-..++-.+-+++
T Consensus 223 ~l~~~l~~~~v~~~-d~~-~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 300 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQ-DIR-YVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELEE 300 (324)
T ss_dssp HHHHHHCTSTS-TT-THH-HHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHHH
T ss_pred HHHHHcCCcccccH-HHH-HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHHH
Confidence 888888754 3333 333 33333432333 3666666544222 11333333445555544333333344444444
Q ss_pred HH
Q 038112 599 AL 600 (625)
Q Consensus 599 ~~ 600 (625)
..
T Consensus 301 f~ 302 (324)
T PF11838_consen 301 FF 302 (324)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 468
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=40.41 E-value=39 Score=26.26 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=17.3
Q ss_pred hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 038112 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVIN 143 (625)
Q Consensus 110 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 143 (625)
+...|.-.+|..+|++|++.|-+||. |+.|+.
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 44455555666666666666655543 344443
No 469
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=40.25 E-value=5.7e+02 Score=28.55 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=14.1
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 038112 351 LINGLCKNGYLNKAIQILNE 370 (625)
Q Consensus 351 l~~~~~~~~~~~~a~~~~~~ 370 (625)
.++.+...++|.+|..+.++
T Consensus 700 ~ir~~Ld~~~Y~~Af~~~Rk 719 (928)
T PF04762_consen 700 GIRKLLDAKDYKEAFELCRK 719 (928)
T ss_pred HHHHHHhhccHHHHHHHHHH
Confidence 45566778888888877663
No 470
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.82 E-value=3.1e+02 Score=25.38 Aligned_cols=57 Identities=14% Similarity=0.002 Sum_probs=30.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCC-CC-----CCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 038112 508 ILIHGLCSAGKVEDALQLYSNMKKRN-CV-----PNLVTYNTLMDGLFKTGDCDKALEIWNHI 564 (625)
Q Consensus 508 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (625)
.|+..|-+.++|..|...+.-+...+ .. --..++-.+++.|.+.++..+|..+..+.
T Consensus 108 ~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRa 170 (399)
T KOG1497|consen 108 HLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRA 170 (399)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34455666666666666555443321 10 11234455666666666666666665554
No 471
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=39.58 E-value=70 Score=23.99 Aligned_cols=49 Identities=12% Similarity=-0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCC
Q 038112 576 YNITLKGLCSCSRMSDAFEFLNDALC-----RGILPTTITWHILVRAVMNNGAS 624 (625)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~ 624 (625)
|..++..|...|..++|++++.+..+ ..-.+.......++.-+.+.|.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~iv~yL~~L~~~ 95 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLADEEDSDEEDPFLSGVKETIVQYLQKLGNE 95 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhcccccccccccccCchhHHHHHHHhCChh
No 472
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.25 E-value=3e+02 Score=24.99 Aligned_cols=204 Identities=15% Similarity=0.141 Sum_probs=111.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhh-------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 038112 315 ILIRGLLENGKVDEAISIWELLREKNCNADSTT-------HGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVN 387 (625)
Q Consensus 315 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~ 387 (625)
.+.+-..+.+++++|+..+.+++..|...|..+ ...+...|...|++..-.+......+
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre-------------- 73 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSRE-------------- 73 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHH--------------
Confidence 345556677788888888888888876665443 44566777778877665555543221
Q ss_pred HHhhCCCCccHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCChh-----hHHHHHHHHhccCCHHHHHHHHHHH--
Q 038112 388 RMDKHGCKLNAYTCNSLMNGFIQA-SKLENAIFLFKEMSRKGCSPTVV-----SYNTLINGLCKVERFGEAYSFVKEM-- 459 (625)
Q Consensus 388 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~-- 459 (625)
.|..-..+....+...++..+... ..++.-+.+.....+-....... .-..++..+.+.|.+.+|+.+...+
T Consensus 74 ~m~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 74 AMEDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 233333333455566666665543 35666666666555421111111 1234567777888888888766544
Q ss_pred --HHCCCCCCHhhHHHH-HHHHhccCCHHHHHHHHHHHHh---C-CCCCCHHHHHHHHHH--HHcCCCHHHHHHHHHHHH
Q 038112 460 --LEKGWKPDMITYSLL-INGLCQSKKIDMALKLCCQFLQ---K-GFTPDVTMYNILIHG--LCSAGKVEDALQLYSNMK 530 (625)
Q Consensus 460 --~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~---~-~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~ 530 (625)
.+.+-+|+..+...+ -.+|....+..++..-+..+.- . -.||-...-.-|+.+ .+...++..|..+|-+..
T Consensus 154 ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~ 233 (421)
T COG5159 154 ELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEAL 233 (421)
T ss_pred HHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHH
Confidence 333445554433222 2345555566655555544432 1 112222222223322 234557888888877776
Q ss_pred hC
Q 038112 531 KR 532 (625)
Q Consensus 531 ~~ 532 (625)
+.
T Consensus 234 Eg 235 (421)
T COG5159 234 EG 235 (421)
T ss_pred hc
Confidence 53
No 473
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.22 E-value=5.5e+02 Score=28.09 Aligned_cols=28 Identities=32% Similarity=0.350 Sum_probs=20.5
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038112 172 CYNILIDGFFKKGDYMRAKEIWERLVME 199 (625)
Q Consensus 172 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 199 (625)
-|..|+..|...|..++|+++|..+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4666777777778888888877777653
No 474
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=39.16 E-value=5.2e+02 Score=27.78 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=11.9
Q ss_pred hcCChhhHHHHHHHHHhCCCCC
Q 038112 147 KSGDLLGALAVFDEMFERGVET 168 (625)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~ 168 (625)
+.+|.+.|+..+.+|++.|..|
T Consensus 270 rgsD~daAl~~la~ml~~Gedp 291 (725)
T PRK13341 270 RGSDPDAALYWLARMVEAGEDP 291 (725)
T ss_pred hcCCHHHHHHHHHHHHHcCCCH
Confidence 3455555555555555555443
No 475
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=39.13 E-value=5.1e+02 Score=27.71 Aligned_cols=135 Identities=13% Similarity=0.086 Sum_probs=80.5
Q ss_pred CCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCCCcchH
Q 038112 133 PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFF---KKGDYMRAKEIWERLVMETSVYPNVVTY 209 (625)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 209 (625)
-+...+..||..+.+.|+++.....-..|.+. .+.++..|...+.-.. ..++..++..+|++.+... .++..|
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy---~~v~iw 186 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY---NSVPIW 186 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc---ccchHH
Confidence 35566788888899999998877776666665 4556777777665543 3467777888888877653 345556
Q ss_pred HHHHHHHHh-------cCChhhHHHHHHHHHhC-CC--CCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038112 210 NVMINGLCK-------CGRFDECLEMWDRMKKN-ER--EKDSF---TYCSFIHGLCKAGNVEGAERVYREMVESG 271 (625)
Q Consensus 210 ~~l~~~~~~-------~g~~~~a~~~~~~~~~~-~~--~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 271 (625)
...+..+.. .++++....+|.+.+.. |. ..-.. .|.-+-..|...-..++...++..-+..+
T Consensus 187 ~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~ 261 (881)
T KOG0128|consen 187 EEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP 261 (881)
T ss_pred HHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 555544443 35677777777776642 11 11111 12222223334444455666666555543
No 476
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=39.05 E-value=3.3e+02 Score=25.46 Aligned_cols=114 Identities=17% Similarity=0.109 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH------cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHH
Q 038112 485 DMALKLCCQFLQKGFTPDVTMYNILIHGLC------SAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKAL 558 (625)
Q Consensus 485 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 558 (625)
+++..++++....+ .|.+......+.++- ..-+|.....+|+.+... .|++++-.+-.-+..+..-++.++
T Consensus 273 ~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~--apSPvV~LNRAVAla~~~Gp~agL 349 (415)
T COG4941 273 DEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA--APSPVVTLNRAVALAMREGPAAGL 349 (415)
T ss_pred HHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh--CCCCeEeehHHHHHHHhhhHHhHH
Confidence 44455555555443 244444443333322 112455555555555542 344332222222223333344455
Q ss_pred HHHHHHHHcC-CCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 559 EIWNHILEER-LRPDIISYNITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 559 ~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
.+.+-+.+.+ +.--...+..-...+.+.|+.++|...|++.+.
T Consensus 350 a~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 350 AMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred HHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 5555444421 111111222333445556666666666666653
No 477
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=38.71 E-value=96 Score=21.62 Aligned_cols=45 Identities=18% Similarity=0.128 Sum_probs=26.8
Q ss_pred ccCChhHHHHHHHHHHH---cCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 550 KTGDCDKALEIWNHILE---ERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 550 ~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
..|+.+.|+..|++.+. .|+..... .......|+.|.++-++|..
T Consensus 20 E~g~~e~Al~~Y~~gi~~l~eg~ai~~~-------~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 20 EWGDKEQALAHYRKGLRELEEGIAVPVP-------SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHcCCCCC-------cccccHHHHHHHHHHHHHHH
Confidence 44777888888877665 23222111 22344557788888888863
No 478
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=38.46 E-value=55 Score=22.59 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=20.6
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 038112 549 FKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCS 585 (625)
Q Consensus 549 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 585 (625)
...|+.+.+.++++++++.|..|.......+..+..+
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~ 48 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE 48 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3456667777777777766555554444444444433
No 479
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=37.92 E-value=3e+02 Score=28.40 Aligned_cols=73 Identities=18% Similarity=0.172 Sum_probs=45.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHhccCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 038112 438 TLINGLCKVERFGEAYSFVKEMLEKG--WKPDMITYSLLINGLCQSKKID------MALKLCCQFLQKGFTPDVTMYNIL 509 (625)
Q Consensus 438 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~A~~~~~~~~~~~~~~~~~~~~~l 509 (625)
.+..+|...|++-.+.++++.++..+ -+.=...++..++...+.|.++ .|.+++++.. +.-|..+|..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 67788888888888888888887642 1122345677777777777654 3344444433 33466666666
Q ss_pred HHHH
Q 038112 510 IHGL 513 (625)
Q Consensus 510 ~~~~ 513 (625)
.++-
T Consensus 110 ~~~s 113 (1117)
T COG5108 110 CQAS 113 (1117)
T ss_pred HHhh
Confidence 5543
No 480
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=37.60 E-value=5.5e+02 Score=29.20 Aligned_cols=129 Identities=16% Similarity=0.092 Sum_probs=71.8
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHH-------hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-----C-
Q 038112 467 DMITYSLLINGLCQSKKIDMALKLCCQFL-------QKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKR-----N- 533 (625)
Q Consensus 467 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~- 533 (625)
....|..+...+.+.++.++|...-.+.. ....+.+...|..+...+...++...|...+.+.... |
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC
Confidence 34556677777777788777776554432 1222223445555555555666777777666665542 1
Q ss_pred -CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc-----CCC--CCHHHHHHHHHHHhhcCChHHHHHH
Q 038112 534 -CVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEE-----RLR--PDIISYNITLKGLCSCSRMSDAFEF 595 (625)
Q Consensus 534 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~--p~~~~~~~l~~~~~~~g~~~~A~~~ 595 (625)
-||...++..+...+...++++.|+++.+.+... |-. +...++..+.+.+...+++..|...
T Consensus 1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 2333445555555555667778888877777662 111 1334455555555555555554443
No 481
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=37.53 E-value=2.4e+02 Score=23.47 Aligned_cols=97 Identities=10% Similarity=0.144 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 487 ALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 487 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
...++..+.+.|.-.|...-...+..-.+.| ..-..+..++.+.|+ +..+....+..+......+.|...+.+-..
T Consensus 54 Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~ 129 (174)
T COG2137 54 IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRKKFK 129 (174)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHHHhC
Confidence 3344444444444444443333333333333 223344455555553 333333333333333344445544444333
Q ss_pred cC-CCCCHHHHHHHHHHHhhcC
Q 038112 567 ER-LRPDIISYNITLKGLCSCS 587 (625)
Q Consensus 567 ~~-~~p~~~~~~~l~~~~~~~g 587 (625)
.. ..|+......+...+...|
T Consensus 130 ~~~~~~~~~~k~Ki~r~L~~rG 151 (174)
T COG2137 130 RENKPPDKKEKAKIQRFLLRRG 151 (174)
T ss_pred ccccCcchhHHHHHHHHHHHcC
Confidence 22 2234333333444444333
No 482
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=37.27 E-value=3.4e+02 Score=25.04 Aligned_cols=44 Identities=7% Similarity=0.183 Sum_probs=30.2
Q ss_pred HHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHh
Q 038112 155 LAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVM 198 (625)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 198 (625)
.++++.+.+.++.|.-.++..+.-.+.+.=.+...+.+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 35566666667777777777776667777777777777777654
No 483
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=36.57 E-value=97 Score=23.45 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=34.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhH
Q 038112 140 TVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMR 188 (625)
Q Consensus 140 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 188 (625)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-..+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 3455555566677788888888887777777777777777777765543
No 484
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=36.28 E-value=3.3e+02 Score=24.70 Aligned_cols=98 Identities=22% Similarity=0.317 Sum_probs=53.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhC-
Q 038112 350 VLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSL-MNGFIQASKLENAIFLFKEMSRK- 427 (625)
Q Consensus 350 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~- 427 (625)
.++..+.+.|++..|+.+...+.. ++.+....++..+...+ -..|...++..++..-+......
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~--------------ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~A 195 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLH--------------ELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLA 195 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH--------------HHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHh
Confidence 467788899999999988875432 45555555544332222 23444455555555544444321
Q ss_pred ---CCCCChhhHHHHHHH--HhccCCHHHHHHHHHHHHH
Q 038112 428 ---GCSPTVVSYNTLING--LCKVERFGEAYSFVKEMLE 461 (625)
Q Consensus 428 ---~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~ 461 (625)
-++|-...-.-++.+ .+...++..|..+|-+..+
T Consensus 196 ns~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 196 NSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 123333322223322 3445677788887777665
No 485
>PRK13342 recombination factor protein RarA; Reviewed
Probab=36.18 E-value=4.3e+02 Score=25.97 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=13.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhh
Q 038112 447 ERFGEAYSFVKEMLEKGWKPDMIT 470 (625)
Q Consensus 447 ~~~~~a~~~~~~~~~~~~~~~~~~ 470 (625)
.+.+.|+.++..|++.|..|....
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~ 267 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIA 267 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHH
Confidence 455556666666665555444333
No 486
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.16 E-value=72 Score=29.02 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=31.2
Q ss_pred CCHh-HHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhh
Q 038112 133 PDVY-SYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCY 173 (625)
Q Consensus 133 ~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 173 (625)
||.. .|+..|....+.||.++|+.+++++.+.|..--..+|
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3444 4678899999999999999999999998876433333
No 487
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.50 E-value=96 Score=28.28 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 038112 312 SYNILIRGLLENGKVDEAISIWELLREKNCN 342 (625)
Q Consensus 312 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 342 (625)
.|+.-|....+.||+++|+.++++..+.|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3445555566666666666666666665544
No 488
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.83 E-value=2.6e+02 Score=23.11 Aligned_cols=61 Identities=10% Similarity=0.047 Sum_probs=41.5
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhH
Q 038112 127 WEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMR 188 (625)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 188 (625)
...|++.+.. -..++..+...++.-.|.++++.+.+.+...+..|....+..+...|-..+
T Consensus 18 ~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 18 AQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 3445544433 345555666667777888888888888877787777777777777775543
No 489
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.82 E-value=2.3e+02 Score=23.41 Aligned_cols=54 Identities=19% Similarity=0.078 Sum_probs=31.1
Q ss_pred CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038112 306 GCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNG 359 (625)
Q Consensus 306 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 359 (625)
+...+..-..++..+...++.-.|.++++.+.+.++..+..|....+..+...|
T Consensus 21 GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 21 NVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 333444444555555555555566777777777666666666555555555544
No 490
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.95 E-value=4.2e+02 Score=25.15 Aligned_cols=20 Identities=10% Similarity=0.096 Sum_probs=13.8
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 038112 286 FCRAGKIKECFELWEVMGRK 305 (625)
Q Consensus 286 ~~~~~~~~~a~~~~~~~~~~ 305 (625)
|...++++.|+.++......
T Consensus 193 ciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 193 CIGLKRFERALYLLEICVTT 212 (422)
T ss_pred eeccccHHHHHHHHHHHHhc
Confidence 44567788888887776654
No 491
>PHA02875 ankyrin repeat protein; Provisional
Probab=33.88 E-value=4.6e+02 Score=25.63 Aligned_cols=16 Identities=25% Similarity=-0.014 Sum_probs=7.2
Q ss_pred HHHHhcCCHHHHHHHH
Q 038112 284 DGFCRAGKIKECFELW 299 (625)
Q Consensus 284 ~~~~~~~~~~~a~~~~ 299 (625)
...+..|+.+-+.-++
T Consensus 140 h~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 140 HLAVMMGDIKGIELLI 155 (413)
T ss_pred HHHHHcCCHHHHHHHH
Confidence 3344555554444333
No 492
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=33.80 E-value=90 Score=23.87 Aligned_cols=51 Identities=16% Similarity=0.181 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhH
Q 038112 138 YGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMR 188 (625)
Q Consensus 138 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 188 (625)
-..++..+...+..-.|.++++.+.+.+...+..|....+..+.+.|-..+
T Consensus 10 R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 10 RLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 345666666777788888999988888877777777777777777765443
No 493
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=33.78 E-value=4.4e+02 Score=25.34 Aligned_cols=49 Identities=10% Similarity=0.034 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 038112 224 ECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIF 273 (625)
Q Consensus 224 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 273 (625)
+|.-+++......+ .+...-..+++.|...|-...|...|..+.-+.+.
T Consensus 201 ~Ai~lLE~~l~~s~-~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ 249 (365)
T PF09797_consen 201 QAIALLEHALKKSP-HNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQ 249 (365)
T ss_pred HHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHH
Confidence 44455555554432 34445555666677777777777777665443333
No 494
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=33.59 E-value=3.9e+02 Score=24.67 Aligned_cols=112 Identities=10% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCH
Q 038112 247 FIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKV 326 (625)
Q Consensus 247 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 326 (625)
++....+.++.....+.+..+. ........+......|++..|++++..... -...+..+-..-.-..++
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~----~l~~l~~~~c~~~L~~~L 173 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ----LLEELKGYSCVRHLSSQL 173 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----HHHhcccchHHHHHhHHH
Q ss_pred HHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 038112 327 DEAISIWELLREKN-----CNADSTTHGVLINGLCKNGYLNKAIQIL 368 (625)
Q Consensus 327 ~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 368 (625)
++-....+.+.+.. ...|+..|..+..+|...|+...+.+-+
T Consensus 174 ~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 174 QETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHH
No 495
>PRK09857 putative transposase; Provisional
Probab=33.56 E-value=3.9e+02 Score=24.68 Aligned_cols=64 Identities=17% Similarity=0.133 Sum_probs=38.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC
Q 038112 543 TLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPT 607 (625)
Q Consensus 543 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (625)
.++......|+.++-.++++.+.+. .++..+...+++.-+.+.|.-++++++..+|+..|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3333334556666666666665553 222334455666666666776777888888887776654
No 496
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.31 E-value=7.8e+02 Score=27.81 Aligned_cols=132 Identities=13% Similarity=0.012 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh----hHH
Q 038112 278 TYNAMIDGFCRAGKIKECFELWEVMGRKGCL----NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADST----THG 349 (625)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~ 349 (625)
.|..+++.+-+.+-.+.+.++-..+...-++ -+..++.+.......|.+-+|...+-. .||.. ...
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLR 1058 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLR 1058 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHH
Confidence 4566778888888888888877666655443 345667777788888888887665432 23433 445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHH-HHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 038112 350 VLINGLCKNGYLNKAIQILNEVEEGGEGRLADAAS-LVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLF 421 (625)
Q Consensus 350 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 421 (625)
.++-.++..|.++.-.+ + .-.+-.++... +++...+...--....|+.|-..+...+++.+|-.+.
T Consensus 1059 qlvivLfecg~l~~L~~-f-----pfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1059 QLVIVLFECGELEALAT-F-----PFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHhccchHHHhh-C-----CccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 56666777776654322 0 00111222222 2223333333334445677777777888888776544
No 497
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=32.23 E-value=3.6e+02 Score=23.90 Aligned_cols=157 Identities=11% Similarity=-0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HccCCchHHHHHHHHhHHhhCCCcch-------
Q 038112 38 PHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAY-GKNSMPDKALDVFQRMNEIFGCEAGI------- 109 (625)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~------- 109 (625)
..-+..++..+.+.++++++.+.+.++...++..+..-.+.+..+| ...|....+++.+..+.+........
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~ 80 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIK 80 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHH
Q ss_pred ------------------------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC-
Q 038112 110 ------------------------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER- 164 (625)
Q Consensus 110 ------------------------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 164 (625)
+.....-.++.-+|.+|...- -....-+...-.+..-.+.|.+.|+.+.+.
T Consensus 81 ~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDy----yRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a 156 (236)
T PF00244_consen 81 DYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDY----YRYLAEFDSGDEKKEAAEKALEAYEEALEIA 156 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHH----HHHHHHCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccc----cccccccccchhhHHHHHHHHHhhhhHHHHH
Q ss_pred --CCCCCchhhHHHHHHHHh-----cCChhHHHHHHHHHHh
Q 038112 165 --GVETNVVCYNILIDGFFK-----KGDYMRAKEIWERLVM 198 (625)
Q Consensus 165 --~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~ 198 (625)
.++|...++..++--++- .|+.++|.++-+....
T Consensus 157 ~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 157 KKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred hcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
No 498
>PRK09857 putative transposase; Provisional
Probab=32.10 E-value=4.1e+02 Score=24.53 Aligned_cols=65 Identities=11% Similarity=0.160 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 038112 279 YNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNA 343 (625)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 343 (625)
+..++......++.++..++++.+....+........++.-+...|..+++.++..+|...|...
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 33444444455666666666666655544333334455666666666666777777777776653
No 499
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=32.06 E-value=4.2e+02 Score=24.60 Aligned_cols=106 Identities=9% Similarity=-0.051 Sum_probs=58.1
Q ss_pred HHHHHHHccC-ChhHHHHHHHhhc--cCCCC------------CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCC
Q 038112 7 RLLNLLKAEK-NPHTALALFDSAT--REPGY------------AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYC 71 (625)
Q Consensus 7 ~l~~~l~~~~-~~~~A~~~~~~~~--~~~~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 71 (625)
.++..++.+. ....+.++.+.++ ..... |+.+.... -.......++..+..+..+.....+ +.
T Consensus 54 ~lA~~l~eq~~~~~~~yrL~R~a~W~~I~~lP~~~~~g~T~L~~p~ad~~~-~~~~~~~~~~~~~Ll~~~E~sl~~~-pf 131 (301)
T TIGR03362 54 QVADLLLEQDPDDPRGYRLRRTALWGTITALPMSNADGRTRLAPPPADRVA-DYQELLAQADWAALLQRVEQSLSLA-PF 131 (301)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCCHHHHH-HHHHHHhCCCHHHHHHHHHHHHHhC-ch
Confidence 4556666554 4567777666542 11111 23333333 3333346677788888888887774 44
Q ss_pred CHHHHHHHHHHHHccCCchHHHHHHH----HhHHhhCCCcchhhhcCC
Q 038112 72 PEDVALSVIQAYGKNSMPDKALDVFQ----RMNEIFGCEAGILCRKRQ 115 (625)
Q Consensus 72 ~~~~~~~l~~~~~~~~~~~~A~~~~~----~~~~~~~~~~~~~~~~~~ 115 (625)
--+......+++.+.|. +.+.+... .++...|....+....|.
T Consensus 132 WLDgq~~~~qal~~lG~-~~~a~aI~~el~~fL~RlP~L~~L~F~DGt 178 (301)
T TIGR03362 132 WLDGQRLSAQALERLGY-AAVAQAIRDELAAFLERLPGLLELKFSDGT 178 (301)
T ss_pred hhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCcChhhcccCCCC
Confidence 55666777788888884 44443333 223355555554444443
No 500
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=31.43 E-value=5.7e+02 Score=25.96 Aligned_cols=99 Identities=17% Similarity=0.121 Sum_probs=62.1
Q ss_pred hhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHH
Q 038112 18 PHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQ 97 (625)
Q Consensus 18 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 97 (625)
.+.-...+...+...+...++.++..++++ ..|...++..++++++..+. ..-....+-.++ ..-+.+....+++
T Consensus 180 ~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~--a~Gs~RDalslLDq~i~~~~--~~It~~~v~~~l-G~~~~~~~~~~~~ 254 (515)
T COG2812 180 LEEIAKHLAAILDKEGINIEEDALSLIARA--AEGSLRDALSLLDQAIAFGE--GEITLESVRDML-GLTDIEKLLSLLE 254 (515)
T ss_pred HHHHHHHHHHHHHhcCCccCHHHHHHHHHH--cCCChhhHHHHHHHHHHccC--CcccHHHHHHHh-CCCCHHHHHHHHH
Confidence 445666677777777778888887777764 47888888888888887652 122222222222 2234444555555
Q ss_pred HhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCC
Q 038112 98 RMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKP 133 (625)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 133 (625)
.+ ..++...+...++++...|..|
T Consensus 255 ~i------------~~~d~~~~~~~~~~l~~~G~~~ 278 (515)
T COG2812 255 AI------------LKGDAKEALRLINELIEEGKDP 278 (515)
T ss_pred HH------------HccCHHHHHHHHHHHHHhCcCH
Confidence 44 4577778888888887777433
Done!