Query 038112
Match_columns 625
No_of_seqs 747 out of 3499
Neff 12.2
Searched_HMMs 29240
Date Mon Mar 25 12:59:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.5E-40 8.4E-45 339.9 40.2 488 71-618 82-594 (597)
2 2xpi_A Anaphase-promoting comp 100.0 5.8E-40 2E-44 337.1 41.1 488 36-583 82-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 7.7E-30 2.6E-34 246.4 44.2 377 7-412 4-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.5E-29 8.7E-34 242.8 46.6 213 401-621 172-386 (388)
5 4g26_A Pentatricopeptide repea 100.0 2.2E-28 7.5E-33 238.6 24.8 185 436-620 29-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 2E-27 6.9E-32 231.8 25.3 199 388-586 15-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 2.2E-25 7.5E-30 224.4 39.9 432 112-574 18-483 (514)
8 2gw1_A Mitochondrial precursor 100.0 2.8E-25 9.5E-30 223.6 37.9 442 135-609 6-483 (514)
9 3fp2_A TPR repeat-containing p 100.0 3.7E-25 1.3E-29 224.0 37.3 431 6-462 29-491 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 3.3E-24 1.1E-28 211.7 36.5 324 19-352 9-370 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 1E-23 3.5E-28 208.2 39.3 313 169-531 25-357 (450)
12 3fp2_A TPR repeat-containing p 99.9 2E-23 6.9E-28 211.2 41.3 429 110-574 35-496 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 5.7E-22 1.9E-26 189.4 33.0 326 6-356 7-351 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 3.3E-21 1.1E-25 184.1 36.4 310 37-380 2-341 (359)
15 1xi4_A Clathrin heavy chain; a 99.9 3.5E-18 1.2E-22 176.6 55.9 314 10-373 993-1308(1630)
16 2xm6_A Protein corresponding t 99.9 7.5E-19 2.6E-23 174.5 50.1 364 154-568 26-433 (490)
17 1xi4_A Clathrin heavy chain; a 99.9 2.3E-17 7.9E-22 170.6 57.6 505 5-593 842-1375(1630)
18 2xm6_A Protein corresponding t 99.9 4.6E-18 1.6E-22 168.9 50.7 394 120-566 27-466 (490)
19 3hym_B Cell division cycle pro 99.9 1.3E-20 4.4E-25 177.6 30.2 288 34-355 18-314 (330)
20 3hym_B Cell division cycle pro 99.9 2.5E-20 8.5E-25 175.6 31.0 286 70-389 19-314 (330)
21 2ooe_A Cleavage stimulation fa 99.9 1.9E-18 6.6E-23 173.4 43.6 431 25-532 2-492 (530)
22 2ooe_A Cleavage stimulation fa 99.9 2.8E-18 9.6E-23 172.2 43.5 414 124-566 3-491 (530)
23 1fch_A Peroxisomal targeting s 99.9 4.8E-20 1.6E-24 176.6 25.8 289 13-333 36-353 (368)
24 1fch_A Peroxisomal targeting s 99.9 2.1E-19 7.2E-24 172.1 26.6 299 112-423 37-355 (368)
25 4eqf_A PEX5-related protein; a 99.8 1.8E-19 6E-24 172.3 21.0 236 37-304 64-309 (365)
26 4g1t_A Interferon-induced prot 99.8 7.8E-18 2.7E-22 167.1 32.8 352 5-372 54-457 (472)
27 4g1t_A Interferon-induced prot 99.8 3.9E-17 1.3E-21 162.1 37.2 384 169-603 50-460 (472)
28 4eqf_A PEX5-related protein; a 99.8 3.2E-19 1.1E-23 170.5 21.4 265 277-599 66-353 (365)
29 1b89_A Protein (clathrin heavy 99.8 2.3E-17 7.8E-22 152.8 32.2 246 8-323 9-254 (449)
30 3cv0_A Peroxisome targeting si 99.8 1.2E-18 4.1E-23 163.8 24.5 275 6-302 25-312 (327)
31 3cv0_A Peroxisome targeting si 99.8 1.2E-17 4.1E-22 156.9 26.4 265 73-370 21-311 (327)
32 3mkr_A Coatomer subunit epsilo 99.8 6.1E-18 2.1E-22 154.2 23.1 198 133-340 63-265 (291)
33 1b89_A Protein (clathrin heavy 99.8 4.9E-18 1.7E-22 157.2 20.7 282 147-490 15-304 (449)
34 3mkr_A Coatomer subunit epsilo 99.8 7.5E-17 2.6E-21 147.0 27.4 164 399-574 102-269 (291)
35 3e4b_A ALGK; tetratricopeptide 99.8 2.8E-16 9.6E-21 153.2 28.9 256 310-600 141-419 (452)
36 3e4b_A ALGK; tetratricopeptide 99.8 2.3E-16 7.7E-21 153.9 26.7 48 483-533 337-388 (452)
37 3uq3_A Heat shock protein STI1 99.7 7.5E-17 2.6E-21 145.7 19.5 221 6-234 9-235 (258)
38 2pl2_A Hypothetical conserved 99.7 8.3E-17 2.8E-21 140.2 17.8 204 6-233 9-212 (217)
39 2pl2_A Hypothetical conserved 99.7 2.1E-16 7.2E-21 137.6 19.8 201 132-338 2-213 (217)
40 2h6f_A Protein farnesyltransfe 99.7 1E-15 3.6E-20 144.1 25.3 253 35-322 94-365 (382)
41 2h6f_A Protein farnesyltransfe 99.7 1.4E-15 4.9E-20 143.1 25.0 245 6-287 101-364 (382)
42 3uq3_A Heat shock protein STI1 99.7 3.1E-15 1.1E-19 135.0 24.2 230 309-566 4-235 (258)
43 3u4t_A TPR repeat-containing p 99.7 2.7E-15 9.3E-20 136.6 23.9 253 38-320 3-265 (272)
44 3u4t_A TPR repeat-containing p 99.7 1.4E-14 4.8E-19 131.9 27.3 240 170-428 3-251 (272)
45 4e6h_A MRNA 3'-END-processing 99.7 1E-12 3.5E-17 132.0 41.9 427 117-566 49-569 (679)
46 1ouv_A Conserved hypothetical 99.7 8E-14 2.7E-18 126.7 30.2 228 35-308 3-254 (273)
47 4e6h_A MRNA 3'-END-processing 99.7 2.4E-12 8.4E-17 129.3 42.4 445 54-532 48-570 (679)
48 1ouv_A Conserved hypothetical 99.7 2.6E-13 9E-18 123.3 32.1 222 309-566 5-250 (273)
49 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.5E-15 5.1E-20 138.6 17.2 252 10-299 13-269 (275)
50 1xnf_A Lipoprotein NLPI; TPR, 99.7 4.1E-15 1.4E-19 135.7 18.2 248 110-368 15-269 (275)
51 3sf4_A G-protein-signaling mod 99.6 1.6E-15 5.6E-20 147.1 15.9 273 7-303 14-334 (406)
52 2ho1_A Type 4 fimbrial biogene 99.6 8.3E-14 2.8E-18 125.0 25.8 202 135-340 37-239 (252)
53 2q7f_A YRRB protein; TPR, prot 99.6 6.5E-15 2.2E-19 131.5 17.6 207 6-247 27-233 (243)
54 2ho1_A Type 4 fimbrial biogene 99.6 9.4E-14 3.2E-18 124.7 25.2 208 398-612 37-246 (252)
55 2vq2_A PILW, putative fimbrial 99.6 1.2E-13 4E-18 121.6 25.2 204 132-339 5-211 (225)
56 2vq2_A PILW, putative fimbrial 99.6 1.7E-13 5.7E-18 120.7 25.9 213 395-614 5-221 (225)
57 3spa_A Mtrpol, DNA-directed RN 99.6 6.3E-16 2.2E-20 155.1 10.7 136 467-607 126-265 (1134)
58 2q7f_A YRRB protein; TPR, prot 99.6 1.6E-14 5.6E-19 128.9 19.1 202 134-340 22-223 (243)
59 3sf4_A G-protein-signaling mod 99.6 2.6E-14 8.9E-19 138.6 21.5 299 278-589 11-363 (406)
60 4a1s_A PINS, partner of inscut 99.6 4.4E-14 1.5E-18 137.2 22.0 274 279-601 51-371 (411)
61 4a1s_A PINS, partner of inscut 99.6 7.8E-15 2.7E-19 142.6 16.5 270 38-339 48-372 (411)
62 2ond_A Cleavage stimulation fa 99.6 1.2E-13 4.2E-18 127.6 23.1 219 19-270 33-270 (308)
63 3spa_A Mtrpol, DNA-directed RN 99.6 1.3E-15 4.4E-20 152.9 9.9 136 432-572 126-265 (1134)
64 3ro2_A PINS homolog, G-protein 99.6 7E-14 2.4E-18 131.7 21.5 203 400-602 85-332 (338)
65 3ro2_A PINS homolog, G-protein 99.6 1.3E-14 4.3E-19 136.9 14.9 276 7-306 10-333 (338)
66 4abn_A Tetratricopeptide repea 99.6 1.1E-13 3.8E-18 135.8 20.4 215 115-335 83-317 (474)
67 3ulq_A Response regulator aspa 99.6 8.4E-13 2.9E-17 126.6 25.6 236 315-566 108-367 (383)
68 3vtx_A MAMA; tetratricopeptide 99.6 5.3E-13 1.8E-17 113.0 21.5 166 397-566 4-169 (184)
69 3vtx_A MAMA; tetratricopeptide 99.6 5.8E-13 2E-17 112.8 20.3 167 169-339 4-170 (184)
70 3ulq_A Response regulator aspa 99.5 1.1E-12 3.8E-17 125.7 24.2 234 212-461 109-367 (383)
71 2ond_A Cleavage stimulation fa 99.5 3.3E-12 1.1E-16 118.0 25.9 219 117-340 33-271 (308)
72 4abn_A Tetratricopeptide repea 99.5 6.5E-13 2.2E-17 130.3 20.3 213 150-369 83-316 (474)
73 3nf1_A KLC 1, kinesin light ch 99.5 4.5E-14 1.6E-18 131.3 10.9 257 35-339 24-307 (311)
74 1hz4_A MALT regulatory protein 99.5 1.2E-11 4.2E-16 118.0 26.6 62 137-198 137-202 (373)
75 3nf1_A KLC 1, kinesin light ch 99.5 4.1E-13 1.4E-17 124.8 15.4 178 308-496 25-223 (311)
76 3q15_A PSP28, response regulat 99.5 2.3E-11 7.9E-16 116.2 26.7 238 312-566 103-364 (378)
77 3q15_A PSP28, response regulat 99.5 6.6E-12 2.3E-16 119.9 21.8 234 350-601 106-364 (378)
78 4gyw_A UDP-N-acetylglucosamine 99.4 2.2E-12 7.6E-17 131.4 18.4 153 6-162 13-172 (723)
79 4i17_A Hypothetical protein; T 99.4 1.7E-11 6E-16 107.7 21.0 208 396-616 5-221 (228)
80 1hz4_A MALT regulatory protein 99.4 2E-10 7E-15 109.5 29.9 234 214-461 22-281 (373)
81 3as5_A MAMA; tetratricopeptide 99.4 1.7E-11 5.8E-16 103.9 17.8 162 6-199 12-173 (186)
82 4i17_A Hypothetical protein; T 99.4 3.4E-11 1.2E-15 105.9 20.1 197 133-341 5-211 (228)
83 4gyw_A UDP-N-acetylglucosamine 99.4 8.9E-12 3E-16 127.0 18.4 165 170-338 9-173 (723)
84 3as5_A MAMA; tetratricopeptide 99.4 2.7E-11 9.2E-16 102.6 18.3 164 172-339 10-173 (186)
85 2uy1_A Cleavage stimulation fa 99.4 2.4E-09 8.3E-14 104.7 33.7 222 85-339 6-242 (493)
86 3edt_B KLC 2, kinesin light ch 99.4 1.9E-11 6.4E-16 111.7 17.5 167 13-199 12-198 (283)
87 3qky_A Outer membrane assembly 99.4 2.2E-11 7.6E-16 109.6 17.0 180 7-199 20-224 (261)
88 3edt_B KLC 2, kinesin light ch 99.3 8.4E-12 2.9E-16 114.1 13.1 217 122-338 30-280 (283)
89 4ga2_A E3 SUMO-protein ligase 99.3 3E-12 1E-16 103.6 8.7 147 7-185 2-149 (150)
90 1qqe_A Vesicular transport pro 99.3 1.3E-10 4.4E-15 106.2 20.2 128 471-600 120-267 (292)
91 1qqe_A Vesicular transport pro 99.3 1E-10 3.5E-15 106.9 18.6 167 55-234 2-186 (292)
92 3mv2_B Coatomer subunit epsilo 99.3 2.2E-09 7.5E-14 95.4 25.2 184 121-312 87-289 (310)
93 3qky_A Outer membrane assembly 99.3 1.7E-10 5.7E-15 103.8 17.7 104 35-164 12-126 (261)
94 3urz_A Uncharacterized protein 99.3 4.2E-11 1.4E-15 103.2 12.2 99 8-109 10-124 (208)
95 3dra_A Protein farnesyltransfe 99.2 2.7E-09 9.1E-14 96.1 23.5 221 18-269 49-286 (306)
96 2r5s_A Uncharacterized protein 99.2 6.9E-11 2.4E-15 98.8 11.7 159 7-197 11-171 (176)
97 2yhc_A BAMD, UPF0169 lipoprote 99.2 3.2E-10 1.1E-14 99.1 16.5 184 6-200 8-214 (225)
98 2pzi_A Probable serine/threoni 99.2 1.4E-10 4.6E-15 119.2 16.3 167 49-221 402-583 (681)
99 3mv2_B Coatomer subunit epsilo 99.2 6.1E-09 2.1E-13 92.5 24.2 172 396-575 98-288 (310)
100 2r5s_A Uncharacterized protein 99.2 1.1E-10 3.6E-15 97.7 12.4 128 6-163 44-172 (176)
101 3rjv_A Putative SEL1 repeat pr 99.2 2.3E-09 7.8E-14 92.5 20.8 175 417-603 5-198 (212)
102 2yhc_A BAMD, UPF0169 lipoprote 99.2 9.3E-10 3.2E-14 96.2 18.2 180 37-237 3-215 (225)
103 3qou_A Protein YBBN; thioredox 99.2 5.5E-10 1.9E-14 101.5 16.8 168 35-233 114-282 (287)
104 3urz_A Uncharacterized protein 99.2 1.7E-09 5.8E-14 93.1 18.7 125 282-427 60-186 (208)
105 4ga2_A E3 SUMO-protein ligase 99.2 1.3E-10 4.6E-15 93.8 10.9 144 177-324 4-148 (150)
106 2pzi_A Probable serine/threoni 99.2 4.7E-10 1.6E-14 115.2 17.7 174 181-360 402-583 (681)
107 3dra_A Protein farnesyltransfe 99.2 2.5E-08 8.7E-13 89.8 26.6 240 46-318 40-301 (306)
108 2uy1_A Cleavage stimulation fa 99.2 1.3E-07 4.5E-12 92.5 33.4 196 388-601 204-412 (493)
109 2fo7_A Synthetic consensus TPR 99.1 3.5E-09 1.2E-13 83.9 16.9 129 209-339 4-132 (136)
110 3rjv_A Putative SEL1 repeat pr 99.1 6.8E-09 2.3E-13 89.5 19.8 175 118-305 4-197 (212)
111 2ifu_A Gamma-SNAP; membrane fu 99.1 1.4E-09 4.9E-14 100.1 16.3 94 51-162 4-103 (307)
112 2fo7_A Synthetic consensus TPR 99.1 3.3E-09 1.1E-13 84.1 16.5 127 471-601 4-131 (136)
113 3qou_A Protein YBBN; thioredox 99.1 1.1E-09 3.6E-14 99.7 14.7 161 171-336 118-281 (287)
114 2vsy_A XCC0866; transferase, g 99.1 1.1E-09 3.9E-14 110.6 15.3 147 15-165 2-158 (568)
115 4gco_A Protein STI-1; structur 99.1 1.1E-09 3.6E-14 85.2 11.7 101 6-109 17-117 (126)
116 2ifu_A Gamma-SNAP; membrane fu 99.0 2.2E-09 7.6E-14 98.8 13.8 228 85-332 3-254 (307)
117 3gyz_A Chaperone protein IPGC; 99.0 1.7E-09 6E-14 86.5 10.3 104 24-130 24-134 (151)
118 3gyz_A Chaperone protein IPGC; 99.0 5.8E-10 2E-14 89.3 7.1 96 7-105 41-136 (151)
119 3q7a_A Farnesyltransferase alp 99.0 6E-08 2E-12 88.1 20.4 227 10-270 62-331 (349)
120 2c2l_A CHIP, carboxy terminus 99.0 3.1E-09 1E-13 96.2 12.0 186 6-198 8-198 (281)
121 2vsy_A XCC0866; transferase, g 99.0 1.3E-08 4.4E-13 102.9 17.6 165 148-317 2-169 (568)
122 4gco_A Protein STI-1; structur 99.0 1.8E-08 6.2E-13 78.2 13.7 95 504-601 14-109 (126)
123 2xcb_A PCRH, regulatory protei 99.0 7.9E-09 2.7E-13 82.6 11.9 98 7-107 23-120 (142)
124 2vgx_A Chaperone SYCD; alterna 98.9 6.5E-09 2.2E-13 83.5 11.4 98 7-107 26-123 (148)
125 2qfc_A PLCR protein; TPR, HTH, 98.9 1.7E-07 5.8E-12 85.6 22.3 166 435-600 77-264 (293)
126 4f3v_A ESX-1 secretion system 98.9 2.3E-09 8E-14 93.9 8.9 190 14-236 18-238 (282)
127 1hh8_A P67PHOX, NCF-2, neutrop 98.9 6.6E-08 2.2E-12 83.6 18.1 131 435-573 8-154 (213)
128 3q7a_A Farnesyltransferase alp 98.9 5.3E-07 1.8E-11 82.0 24.0 241 46-319 62-346 (349)
129 1hxi_A PEX5, peroxisome target 98.9 5.2E-09 1.8E-13 80.6 9.5 99 5-106 20-118 (121)
130 3u3w_A Transcriptional activat 98.9 2.1E-07 7.2E-12 85.0 21.9 163 176-338 81-265 (293)
131 1hh8_A P67PHOX, NCF-2, neutrop 98.9 8.4E-08 2.9E-12 83.0 18.2 125 211-340 11-151 (213)
132 3u3w_A Transcriptional activat 98.9 4.8E-07 1.6E-11 82.6 23.6 161 405-565 82-264 (293)
133 4f3v_A ESX-1 secretion system 98.9 2.5E-08 8.5E-13 87.4 13.9 196 113-316 19-247 (282)
134 3sz7_A HSC70 cochaperone (SGT) 98.9 4.7E-08 1.6E-12 80.4 14.7 102 6-110 15-116 (164)
135 1a17_A Serine/threonine protei 98.9 2.3E-08 8E-13 82.5 12.9 127 6-163 17-145 (166)
136 2vgx_A Chaperone SYCD; alterna 98.9 9.6E-09 3.3E-13 82.5 9.4 96 503-601 21-117 (148)
137 1a17_A Serine/threonine protei 98.8 9.4E-08 3.2E-12 78.8 15.4 128 469-600 14-144 (166)
138 2e2e_A Formate-dependent nitri 98.8 1.5E-08 5.2E-13 84.6 10.4 122 13-165 21-145 (177)
139 4gcn_A Protein STI-1; structur 98.8 1.9E-08 6.6E-13 78.2 10.2 95 5-101 11-111 (127)
140 1p5q_A FKBP52, FK506-binding p 98.8 2.8E-09 9.5E-14 99.2 6.3 151 16-197 127-292 (336)
141 3upv_A Heat shock protein STI1 98.8 3E-08 1E-12 77.3 11.4 95 6-103 8-102 (126)
142 2e2e_A Formate-dependent nitri 98.8 2.2E-08 7.5E-13 83.7 11.2 120 444-566 21-143 (177)
143 2qfc_A PLCR protein; TPR, HTH, 98.8 6.1E-07 2.1E-11 81.9 21.7 168 399-566 76-265 (293)
144 4gcn_A Protein STI-1; structur 98.8 6E-08 2.1E-12 75.4 12.4 106 504-614 9-122 (127)
145 2c2l_A CHIP, carboxy terminus 98.8 4E-08 1.4E-12 88.8 12.4 197 133-339 2-199 (281)
146 2lni_A Stress-induced-phosphop 98.8 1.5E-07 5E-12 74.1 14.1 94 471-566 19-112 (133)
147 2xcb_A PCRH, regulatory protei 98.8 2.6E-08 8.8E-13 79.5 9.5 111 23-164 5-115 (142)
148 3dss_A Geranylgeranyl transfer 98.8 9.9E-07 3.4E-11 79.8 20.6 220 14-270 41-304 (331)
149 3upv_A Heat shock protein STI1 98.8 1.7E-07 5.7E-12 73.0 13.7 95 504-601 5-100 (126)
150 2fbn_A 70 kDa peptidylprolyl i 98.8 7.2E-09 2.5E-13 88.4 6.1 165 3-198 5-185 (198)
151 1p5q_A FKBP52, FK506-binding p 98.8 1.4E-07 4.8E-12 87.7 14.8 130 468-600 147-292 (336)
152 2vyi_A SGTA protein; chaperone 98.7 2.2E-07 7.4E-12 72.8 13.8 114 505-622 14-128 (131)
153 1na0_A Designed protein CTPR3; 98.7 3.3E-07 1.1E-11 71.0 14.7 95 504-601 10-105 (125)
154 2lni_A Stress-induced-phosphop 98.7 2.3E-07 8E-12 73.0 13.8 113 208-322 18-130 (133)
155 1na0_A Designed protein CTPR3; 98.7 4.8E-07 1.6E-11 70.1 15.2 97 242-339 10-106 (125)
156 2xev_A YBGF; tetratricopeptide 98.7 1.3E-07 4.4E-12 74.1 11.7 102 4-108 4-111 (129)
157 3gw4_A Uncharacterized protein 98.7 1.4E-07 4.8E-12 80.8 12.9 156 445-601 4-175 (203)
158 2kck_A TPR repeat; tetratricop 98.7 1.4E-07 4.9E-12 71.5 11.6 98 6-106 10-110 (112)
159 3dss_A Geranylgeranyl transfer 98.7 9.4E-06 3.2E-10 73.5 24.0 183 152-339 91-304 (331)
160 3gw4_A Uncharacterized protein 98.7 4.8E-07 1.7E-11 77.4 15.2 137 276-426 26-175 (203)
161 2vyi_A SGTA protein; chaperone 98.7 5.1E-07 1.7E-11 70.7 14.2 96 243-339 14-109 (131)
162 1elw_A TPR1-domain of HOP; HOP 98.7 1.5E-07 5.2E-12 72.1 10.2 97 6-105 8-104 (118)
163 2fbn_A 70 kDa peptidylprolyl i 98.6 4.5E-08 1.5E-12 83.5 7.2 122 208-330 40-176 (198)
164 3k9i_A BH0479 protein; putativ 98.6 3.8E-08 1.3E-12 75.4 6.0 95 14-109 2-97 (117)
165 1elw_A TPR1-domain of HOP; HOP 98.6 1.3E-06 4.4E-11 66.8 14.8 96 503-601 4-100 (118)
166 3q49_B STIP1 homology and U bo 98.6 2.8E-07 9.6E-12 73.0 11.3 96 6-104 13-108 (137)
167 2hr2_A Hypothetical protein; a 98.6 1.8E-07 6.2E-12 73.6 9.6 101 6-109 15-138 (159)
168 3sz7_A HSC70 cochaperone (SGT) 98.6 7.3E-07 2.5E-11 73.1 13.4 103 467-573 10-112 (164)
169 3q49_B STIP1 homology and U bo 98.6 2.6E-06 8.8E-11 67.3 16.1 96 502-600 8-104 (137)
170 1elr_A TPR2A-domain of HOP; HO 98.6 5.3E-07 1.8E-11 70.6 11.8 107 504-615 5-119 (131)
171 4b4t_Q 26S proteasome regulato 98.6 7.6E-07 2.6E-11 86.7 15.3 209 1-232 1-242 (434)
172 1hxi_A PEX5, peroxisome target 98.6 5E-07 1.7E-11 69.4 10.8 93 506-601 20-113 (121)
173 2kck_A TPR repeat; tetratricop 98.6 1E-06 3.4E-11 66.7 12.5 99 241-340 6-107 (112)
174 1elr_A TPR2A-domain of HOP; HO 98.6 5.7E-07 2E-11 70.4 10.9 111 469-582 5-121 (131)
175 2dba_A Smooth muscle cell asso 98.5 3.1E-06 1.1E-10 67.8 15.3 96 502-601 27-127 (148)
176 2dba_A Smooth muscle cell asso 98.5 3.9E-06 1.3E-10 67.3 15.3 110 467-581 27-141 (148)
177 3rkv_A Putative peptidylprolyl 98.5 2.8E-07 9.4E-12 75.5 8.4 101 6-107 15-131 (162)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 7.5E-08 2.6E-12 93.7 5.4 150 16-196 248-412 (457)
179 2hr2_A Hypothetical protein; a 98.5 6.5E-06 2.2E-10 64.8 14.3 107 505-615 13-149 (159)
180 3rkv_A Putative peptidylprolyl 98.5 2E-06 6.8E-11 70.3 12.1 102 468-572 11-129 (162)
181 1wao_1 Serine/threonine protei 98.4 1.5E-07 5.2E-12 91.9 5.9 94 8-104 12-105 (477)
182 4b4t_Q 26S proteasome regulato 98.4 3.5E-05 1.2E-09 74.9 22.1 195 177-371 11-242 (434)
183 2xev_A YBGF; tetratricopeptide 98.4 1.1E-05 3.7E-10 62.8 15.0 26 280-305 80-105 (129)
184 2if4_A ATFKBP42; FKBP-like, al 98.4 7.9E-07 2.7E-11 82.6 8.7 100 6-108 183-299 (338)
185 3k9i_A BH0479 protein; putativ 98.4 6.8E-07 2.3E-11 68.3 6.8 85 481-566 3-89 (117)
186 3ro3_A PINS homolog, G-protein 98.4 2.9E-06 1E-10 69.3 11.0 132 470-601 11-157 (164)
187 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 4.8E-06 1.7E-10 81.0 13.9 128 470-600 270-413 (457)
188 2l6j_A TPR repeat-containing p 98.3 2.7E-07 9.3E-12 69.8 3.6 92 6-100 8-105 (111)
189 1klx_A Cysteine rich protein B 98.3 2E-05 6.7E-10 62.0 14.3 110 483-603 10-127 (138)
190 1ihg_A Cyclophilin 40; ppiase 98.3 5.3E-06 1.8E-10 77.9 12.8 90 502-594 272-362 (370)
191 1zu2_A Mitochondrial import re 98.3 7.1E-07 2.4E-11 70.1 5.6 89 13-104 13-122 (158)
192 1dce_A Protein (RAB geranylger 98.3 1.3E-05 4.5E-10 79.7 15.9 169 19-221 46-241 (567)
193 2if4_A ATFKBP42; FKBP-like, al 98.3 2.4E-06 8.1E-11 79.4 9.5 147 433-601 179-327 (338)
194 1wao_1 Serine/threonine protei 98.3 3.1E-06 1.1E-10 82.6 10.4 120 107-230 13-134 (477)
195 3ro3_A PINS homolog, G-protein 98.3 4.9E-06 1.7E-10 67.9 10.0 97 470-566 51-157 (164)
196 2kat_A Uncharacterized protein 98.2 5.7E-06 2E-10 62.8 9.0 83 19-104 2-84 (115)
197 1klx_A Cysteine rich protein B 98.2 6.1E-05 2.1E-09 59.1 15.0 111 447-568 9-127 (138)
198 1ihg_A Cyclophilin 40; ppiase 98.2 1.8E-05 6.2E-10 74.2 13.6 121 244-365 226-361 (370)
199 3n71_A Histone lysine methyltr 98.2 4.2E-06 1.4E-10 81.0 9.1 134 11-164 318-464 (490)
200 2l6j_A TPR repeat-containing p 98.2 2E-06 6.7E-11 65.0 5.3 94 502-598 3-103 (111)
201 1dce_A Protein (RAB geranylger 98.1 0.00011 3.8E-09 73.1 18.0 172 151-327 45-243 (567)
202 1na3_A Designed protein CTPR2; 98.1 1.7E-05 5.9E-10 57.0 9.3 76 7-85 14-89 (91)
203 1zu2_A Mitochondrial import re 98.1 6E-06 2.1E-10 64.8 6.1 98 481-582 15-133 (158)
204 2kat_A Uncharacterized protein 98.0 2.9E-05 9.9E-10 58.8 9.0 79 486-566 3-81 (115)
205 1na3_A Designed protein CTPR2; 98.0 5E-05 1.7E-09 54.4 9.9 79 503-584 9-88 (91)
206 3lvg_A Clathrin heavy chain 1; 98.0 5.6E-09 1.9E-13 95.5 -14.3 234 36-333 52-285 (624)
207 3ma5_A Tetratricopeptide repea 97.9 2.8E-05 9.5E-10 57.1 7.6 67 35-102 4-70 (100)
208 3ma5_A Tetratricopeptide repea 97.9 3.9E-05 1.4E-09 56.2 8.3 64 502-566 6-69 (100)
209 2kc7_A BFR218_protein; tetratr 97.9 1.4E-05 4.9E-10 58.6 5.9 85 6-101 4-89 (99)
210 3n71_A Histone lysine methyltr 97.9 0.00021 7.1E-09 69.3 14.5 131 285-426 318-463 (490)
211 3bee_A Putative YFRE protein; 97.7 0.00027 9.2E-09 50.4 9.3 70 35-105 3-75 (93)
212 2kc7_A BFR218_protein; tetratr 97.7 6.9E-05 2.4E-09 54.8 6.4 85 42-128 4-89 (99)
213 3lvg_A Clathrin heavy chain 1; 97.6 6.2E-06 2.1E-10 76.0 -1.3 229 8-261 89-324 (624)
214 3ly7_A Transcriptional activat 97.5 0.0021 7.3E-08 58.4 13.7 71 502-576 276-346 (372)
215 1pc2_A Mitochondria fission pr 97.5 0.00039 1.3E-08 53.9 7.7 90 18-109 14-107 (152)
216 3bee_A Putative YFRE protein; 97.4 0.0013 4.5E-08 46.8 9.4 63 537-601 5-71 (93)
217 3ly7_A Transcriptional activat 97.4 0.0034 1.2E-07 57.1 13.9 74 535-612 274-347 (372)
218 1pc2_A Mitochondria fission pr 97.3 0.0024 8.1E-08 49.6 10.6 86 484-573 14-104 (152)
219 3u64_A Protein TP_0956; tetrat 97.3 0.0011 3.8E-08 57.5 8.7 81 19-101 180-268 (301)
220 3qww_A SET and MYND domain-con 97.2 0.0023 7.7E-08 60.9 11.4 86 516-601 311-410 (433)
221 2v5f_A Prolyl 4-hydroxylase su 97.2 0.0015 5E-08 48.0 8.0 63 6-68 9-76 (104)
222 2v5f_A Prolyl 4-hydroxylase su 97.2 0.0016 5.5E-08 47.8 8.2 75 35-109 2-82 (104)
223 3qww_A SET and MYND domain-con 97.1 0.0012 4.1E-08 62.8 8.2 95 49-163 309-410 (433)
224 3qwp_A SET and MYND domain-con 97.1 0.0037 1.3E-07 59.5 11.6 92 510-601 294-399 (429)
225 3qwp_A SET and MYND domain-con 97.1 0.0063 2.2E-07 58.0 12.8 92 475-566 294-399 (429)
226 1nzn_A CGI-135 protein, fissio 96.8 0.0038 1.3E-07 46.4 6.6 95 13-109 12-110 (126)
227 3u64_A Protein TP_0956; tetrat 96.7 0.012 4.2E-07 51.1 10.6 79 484-566 179-268 (301)
228 1nzn_A CGI-135 protein, fissio 96.7 0.014 4.7E-07 43.5 9.1 86 484-573 17-107 (126)
229 4h7y_A Dual specificity protei 96.6 0.016 5.4E-07 44.2 9.2 105 35-167 10-126 (161)
230 4h7y_A Dual specificity protei 96.6 0.03 1E-06 42.7 10.3 109 70-200 10-124 (161)
231 3mkq_A Coatomer beta'-subunit; 96.3 0.26 9E-06 52.0 20.1 23 311-333 682-704 (814)
232 3mkq_B Coatomer subunit alpha; 96.2 0.17 5.7E-06 40.4 13.2 128 442-599 14-141 (177)
233 3mkq_A Coatomer beta'-subunit; 96.1 0.098 3.4E-06 55.3 15.3 99 409-531 610-709 (814)
234 1qsa_A Protein (soluble lytic 95.8 1.8 6E-05 43.2 28.4 74 282-360 78-151 (618)
235 3mkq_B Coatomer subunit alpha; 95.7 0.59 2E-05 37.3 15.9 44 287-335 16-59 (177)
236 4ady_A RPN2, 26S proteasome re 95.7 2.5 8.5E-05 44.0 46.0 212 403-623 495-721 (963)
237 4b4t_P 26S proteasome regulato 95.6 0.81 2.8E-05 43.7 18.1 173 393-566 51-246 (445)
238 1wy6_A Hypothetical protein ST 95.5 0.53 1.8E-05 35.2 13.4 139 410-570 19-157 (172)
239 4ady_A RPN2, 26S proteasome re 95.5 2.9 9.8E-05 43.6 39.5 257 249-531 382-657 (963)
240 1y8m_A FIS1; mitochondria, unk 95.2 0.57 1.9E-05 35.6 12.0 72 500-573 36-110 (144)
241 3o48_A Mitochondria fission 1 95.1 0.23 7.7E-06 37.1 9.5 73 499-573 36-111 (134)
242 3ffl_A Anaphase-promoting comp 95.0 0.054 1.8E-06 42.4 6.3 93 9-101 27-150 (167)
243 1y8m_A FIS1; mitochondria, unk 94.8 0.27 9.2E-06 37.3 9.2 75 35-109 36-113 (144)
244 3o48_A Mitochondria fission 1 94.7 0.62 2.1E-05 34.8 10.8 79 533-615 35-118 (134)
245 4gns_B Protein CSD3, chitin bi 94.3 0.23 7.7E-06 50.5 10.4 52 546-599 345-397 (754)
246 1wy6_A Hypothetical protein ST 94.2 1.3 4.4E-05 33.2 14.7 138 446-605 20-157 (172)
247 3lpz_A GET4 (YOR164C homolog); 93.5 4 0.00014 36.6 20.5 107 212-333 41-159 (336)
248 4gns_B Protein CSD3, chitin bi 93.4 0.45 1.5E-05 48.3 10.8 126 211-336 253-397 (754)
249 2wpv_A GET4, UPF0363 protein Y 93.2 4.3 0.00015 36.1 20.2 108 212-334 39-158 (312)
250 2ff4_A Probable regulatory pro 93.1 0.66 2.3E-05 43.4 10.8 70 505-575 173-247 (388)
251 3ffl_A Anaphase-promoting comp 92.6 1 3.5E-05 35.3 9.2 23 174-196 67-89 (167)
252 1qsa_A Protein (soluble lytic 92.2 10 0.00035 37.9 36.6 80 414-496 268-347 (618)
253 2ff4_A Probable regulatory pro 92.1 1.3 4.5E-05 41.4 11.4 72 278-349 173-249 (388)
254 1v54_E Cytochrome C oxidase po 91.3 2.8 9.4E-05 29.4 9.5 62 518-580 25-86 (109)
255 1v54_E Cytochrome C oxidase po 91.1 1.6 5.6E-05 30.5 7.8 61 116-177 26-86 (109)
256 4fhn_B Nucleoporin NUP120; pro 90.7 4.4 0.00015 44.3 15.3 51 212-267 818-868 (1139)
257 4fhn_B Nucleoporin NUP120; pro 90.5 17 0.00058 39.8 19.6 188 174-368 816-1043(1139)
258 4b4t_P 26S proteasome regulato 90.3 13 0.00044 35.4 22.6 93 245-337 141-245 (445)
259 3txn_A 26S proteasome regulato 89.8 12 0.00043 34.6 23.5 170 438-609 104-290 (394)
260 2y69_E Cytochrome C oxidase su 88.9 5.9 0.0002 29.6 9.9 62 518-580 68-129 (152)
261 4b4t_R RPN7, 26S proteasome re 88.3 4.2 0.00014 38.6 11.5 97 470-566 133-236 (429)
262 1zbp_A Hypothetical protein VP 87.9 11 0.00039 32.4 12.4 58 46-104 5-62 (273)
263 2y69_E Cytochrome C oxidase su 87.4 3.7 0.00013 30.6 7.8 63 115-178 68-130 (152)
264 2wpv_A GET4, UPF0363 protein Y 87.0 16 0.00055 32.5 22.5 164 403-600 38-215 (312)
265 3txn_A 26S proteasome regulato 86.7 20 0.00068 33.3 25.3 97 350-460 104-208 (394)
266 3lpz_A GET4 (YOR164C homolog); 85.5 20 0.00069 32.2 23.6 164 403-600 40-214 (336)
267 4b4t_R RPN7, 26S proteasome re 84.7 11 0.00037 35.8 12.2 64 38-101 131-196 (429)
268 3esl_A Checkpoint serine/threo 84.0 13 0.00045 30.3 10.4 56 516-571 92-148 (202)
269 3esl_A Checkpoint serine/threo 82.2 13 0.00043 30.4 9.6 58 481-538 92-150 (202)
270 1zbp_A Hypothetical protein VP 79.0 10 0.00035 32.6 8.5 113 476-601 5-128 (273)
271 4a1g_A Mitotic checkpoint seri 74.7 27 0.00093 27.0 9.5 50 522-571 84-134 (152)
272 2wvi_A Mitotic checkpoint seri 70.5 37 0.0013 26.7 9.3 51 522-572 79-130 (164)
273 4b4t_S RPN3, 26S proteasome re 63.6 48 0.0016 31.9 10.1 67 36-104 229-301 (523)
274 4b4t_S RPN3, 26S proteasome re 60.9 1.2E+02 0.004 29.4 12.1 65 207-271 232-300 (523)
275 4ets_A Ferric uptake regulatio 60.4 26 0.00089 27.6 6.7 72 18-90 13-86 (162)
276 2d2s_A Exocyst complex compone 59.7 41 0.0014 28.4 8.2 28 169-196 90-117 (235)
277 3kae_A CDC27, possible protein 59.7 62 0.0021 25.5 14.3 91 9-106 40-147 (242)
278 4a1g_A Mitotic checkpoint seri 59.1 60 0.0021 25.1 10.8 60 555-614 82-142 (152)
279 4aez_C MAD3, mitotic spindle c 53.7 86 0.0029 26.1 8.8 51 521-571 132-183 (223)
280 2wvi_A Mitotic checkpoint seri 51.4 87 0.003 24.6 10.8 57 555-611 77-134 (164)
281 3bu8_A Telomeric repeat-bindin 48.2 1.1E+02 0.0039 25.1 10.4 70 257-326 88-164 (235)
282 2ijq_A Hypothetical protein; s 46.7 59 0.002 25.4 6.4 53 112-164 44-104 (161)
283 2ijq_A Hypothetical protein; s 45.5 88 0.003 24.4 7.2 54 216-269 42-103 (161)
284 4gq2_M Nucleoporin NUP120; bet 45.4 2.4E+02 0.0082 30.1 13.1 110 44-164 816-926 (950)
285 3mv2_A Coatomer subunit alpha; 44.9 1.7E+02 0.0058 26.1 12.6 68 555-622 187-257 (325)
286 4gq2_M Nucleoporin NUP120; bet 43.9 1.1E+02 0.0039 32.5 10.4 49 574-622 898-950 (950)
287 4aez_C MAD3, mitotic spindle c 42.2 1.2E+02 0.0042 25.2 8.0 52 55-106 131-183 (223)
288 3ubw_A 14-3-3E, 14-3-3 protein 41.8 1.7E+02 0.0057 25.1 9.5 59 402-460 35-94 (261)
289 2uwj_G Type III export protein 41.7 89 0.0031 22.0 7.7 11 217-227 50-60 (115)
290 4ets_A Ferric uptake regulatio 41.1 55 0.0019 25.7 5.7 70 118-188 15-87 (162)
291 1ya0_A SMG-7 transcript varian 40.9 74 0.0025 30.7 7.6 57 42-99 156-212 (497)
292 2p58_C Putative type III secre 40.8 93 0.0032 21.9 8.6 11 218-228 52-62 (116)
293 2fe3_A Peroxide operon regulat 40.7 64 0.0022 24.6 6.0 60 29-89 13-72 (145)
294 2xig_A Ferric uptake regulatio 40.0 1.2E+02 0.0041 23.3 7.4 57 303-359 19-75 (150)
295 3bu8_A Telomeric repeat-bindin 37.8 1.7E+02 0.0058 24.1 12.0 48 292-339 88-143 (235)
296 2xig_A Ferric uptake regulatio 37.3 84 0.0029 24.2 6.2 62 28-90 17-78 (150)
297 3eyy_A Putative iron uptake re 35.5 69 0.0024 24.5 5.4 60 28-89 9-68 (145)
298 2fe3_A Peroxide operon regulat 35.3 1.3E+02 0.0045 22.9 7.0 51 309-359 20-70 (145)
299 2qx5_A Nucleoporin NIC96; mRNA 34.8 3.7E+02 0.013 27.1 22.0 17 583-599 548-564 (661)
300 2uwj_G Type III export protein 34.4 1.2E+02 0.0041 21.3 8.6 77 150-235 21-97 (115)
301 2b7e_A PRE-mRNA processing pro 33.8 33 0.0011 21.3 2.5 29 117-145 3-31 (59)
302 2p58_C Putative type III secre 33.2 1.3E+02 0.0044 21.3 9.3 77 150-235 22-98 (116)
303 2nsz_A Programmed cell death p 32.7 1.5E+02 0.0052 22.0 6.7 61 209-273 10-75 (129)
304 1wdy_A 2-5A-dependent ribonucl 31.9 1.6E+02 0.0055 25.1 8.2 14 179-192 11-24 (285)
305 2zu6_B Programmed cell death p 31.8 1.3E+02 0.0044 26.7 7.1 231 245-496 7-269 (307)
306 2ion_A PDCD4, programmed cell 30.8 1.7E+02 0.0059 22.5 6.9 23 281-303 14-36 (152)
307 2o03_A Probable zinc uptake re 30.8 84 0.0029 23.4 5.1 49 139-187 14-62 (131)
308 3c1d_A Protein ORAA, regulator 30.1 1.9E+02 0.0066 22.4 12.4 16 608-623 130-145 (159)
309 1ya0_A SMG-7 transcript varian 29.8 3.8E+02 0.013 25.8 10.5 79 505-585 154-232 (497)
310 1mzb_A Ferric uptake regulatio 29.7 1.3E+02 0.0044 22.6 6.0 51 309-359 16-67 (136)
311 1mzb_A Ferric uptake regulatio 29.6 1.4E+02 0.0046 22.5 6.1 58 32-90 12-70 (136)
312 1oai_A Nuclear RNA export fact 29.5 47 0.0016 20.6 2.8 24 183-206 33-56 (59)
313 3mwm_A ZUR, putative metal upt 29.2 1.1E+02 0.0036 23.2 5.5 48 42-89 17-64 (139)
314 1wdy_A 2-5A-dependent ribonucl 28.8 1.6E+02 0.0054 25.2 7.6 86 283-369 152-240 (285)
315 2d2s_A Exocyst complex compone 28.4 2.7E+02 0.0091 23.5 9.3 22 212-233 24-45 (235)
316 3kea_A K1L; tropism, ANK repea 28.2 2.9E+02 0.0099 23.8 9.6 139 214-369 100-242 (285)
317 2crb_A Nuclear receptor bindin 27.4 88 0.003 21.5 3.9 27 39-65 16-42 (97)
318 3eyy_A Putative iron uptake re 27.4 1E+02 0.0034 23.6 5.1 46 313-359 21-66 (145)
319 3mwm_A ZUR, putative metal upt 27.3 76 0.0026 24.0 4.3 50 138-187 16-65 (139)
320 2o03_A Probable zinc uptake re 26.9 1.1E+02 0.0038 22.7 5.2 47 43-89 15-61 (131)
321 2nsz_A Programmed cell death p 26.3 2E+02 0.0069 21.3 8.2 23 281-303 12-34 (129)
322 2w57_A Ferric uptake regulatio 26.2 1.3E+02 0.0045 23.1 5.6 48 312-359 18-66 (150)
323 2w57_A Ferric uptake regulatio 25.9 1.5E+02 0.0053 22.7 5.9 58 32-90 11-69 (150)
324 1bpo_A Protein (clathrin); cla 25.7 4.4E+02 0.015 25.1 11.6 142 446-600 342-483 (494)
325 3kae_A CDC27, possible protein 24.9 2.6E+02 0.0089 22.1 13.3 26 540-565 116-141 (242)
326 3hra_A Ankyrin repeat family p 24.3 2.7E+02 0.0091 22.1 7.8 15 261-275 158-172 (201)
327 3ltm_A Alpha-REP4; protein eng 23.4 2.9E+02 0.01 22.2 19.8 90 169-268 94-183 (211)
328 1bpo_A Protein (clathrin); cla 23.3 4.9E+02 0.017 24.7 12.6 83 255-340 343-425 (494)
329 3bqo_A Telomeric repeat-bindin 22.6 1.2E+02 0.004 24.6 4.5 35 283-317 124-158 (211)
330 3ax2_A Mitochondrial import re 22.3 98 0.0033 20.3 3.4 26 7-32 22-47 (73)
331 3ltm_A Alpha-REP4; protein eng 22.2 3.1E+02 0.011 22.1 19.4 142 133-291 31-172 (211)
332 4b4t_O 26S proteasome regulato 21.8 4.8E+02 0.016 24.1 10.5 56 475-530 83-154 (393)
333 1oyz_A Hypothetical protein YI 21.1 3.9E+02 0.013 22.8 21.0 149 451-618 128-277 (280)
334 3bqo_A Telomeric repeat-bindin 21.0 3.4E+02 0.012 22.1 9.3 48 292-339 94-146 (211)
335 3pvs_A Replication-associated 20.7 5.4E+02 0.018 24.3 14.3 29 396-426 192-220 (447)
336 2w2u_A Hypothetical P60 katani 20.5 2E+02 0.0069 19.3 4.9 19 548-566 29-47 (83)
337 2rpa_A Katanin P60 ATPase-cont 20.4 1E+02 0.0034 20.5 3.2 25 77-101 16-40 (78)
338 2fu4_A Ferric uptake regulatio 20.2 1.9E+02 0.0066 19.0 7.0 31 591-621 35-65 (83)
339 3eiq_C Programmed cell death p 20.1 5E+02 0.017 23.6 11.6 231 314-583 58-298 (358)
340 2cos_A Serine/threonine protei 20.0 1.2E+02 0.004 18.3 3.0 36 559-599 11-48 (54)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-40 Score=339.87 Aligned_cols=488 Identities=13% Similarity=0.011 Sum_probs=360.0
Q ss_pred CCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 038112 71 CPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGD 150 (625)
Q Consensus 71 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 150 (625)
++...+..++..+.+.|++++|+.+|+++... .|+..++..++.+|.+.|+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----------------------------~p~~~~~~~l~~~~~~~g~ 132 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI-----------------------------TGNPNDAFWLAQVYCCTGD 132 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------HCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh-----------------------------CCCchHHHHHHHHHHHcCc
Confidence 34566667777777777777777777766331 1344455555555555555
Q ss_pred hhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCC--------------CCCCCcchHHHHHHHH
Q 038112 151 LLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMET--------------SVYPNVVTYNVMINGL 216 (625)
Q Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~ 216 (625)
+++|..+|+++... ++++.++..++.+|.+.|++++|+++|+++.... +.+++..+|+.++.+|
T Consensus 133 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (597)
T 2xpi_A 133 YARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVY 210 (597)
T ss_dssp HHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHH
Confidence 55555555555432 3455555555555555555555555555322211 2345677888888888
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH--H-HHHHHHCCCCcCHHHHHHHHHHHHhcCCHH
Q 038112 217 CKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAER--V-YREMVESGIFVDAVTYNAMIDGFCRAGKIK 293 (625)
Q Consensus 217 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (625)
.+.|++++|+++|+++.+.++ .+...+..++..+...+..+.+.. + +..+...+..+...++..++..|.+.|+++
T Consensus 211 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 289 (597)
T 2xpi_A 211 TNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELR 289 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHH
Confidence 888888888888888887653 245556656555444333222221 1 455555544445566666778888888899
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038112 294 ECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEE 373 (625)
Q Consensus 294 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 373 (625)
+|.++|+.+... +++..+|+.++.++.+.|++++|..+|+++.+.++. +..++..++..+...|++++|..++++
T Consensus 290 ~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~--- 364 (597)
T 2xpi_A 290 RAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISND--- 364 (597)
T ss_dssp HHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHH---
T ss_pred HHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHH---
Confidence 999999888766 468888889999999999999999999988877644 677888888888999999999988884
Q ss_pred cCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHH
Q 038112 374 GGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAY 453 (625)
Q Consensus 374 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 453 (625)
+... .+.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+
T Consensus 365 ---------------~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 427 (597)
T 2xpi_A 365 ---------------LVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAI 427 (597)
T ss_dssp ---------------HHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred ---------------HHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3322 23467788888999999999999999999988753 236778999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-
Q 038112 454 SFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKR- 532 (625)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 532 (625)
.+|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.
T Consensus 428 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 428 SAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp HHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 9999988763 4477888899999999999999999999998764 447888999999999999999999999998875
Q ss_pred ---CCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCC
Q 038112 533 ---NCVPN--LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALCRGILP 606 (625)
Q Consensus 533 ---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (625)
+..|+ ..+|..++.+|.+.|++++|.++++++++ ..| +..+|..++.+|.+.|++++|.++++++++. .|
T Consensus 506 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p 581 (597)
T 2xpi_A 506 KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL--LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SP 581 (597)
T ss_dssp HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CC
Confidence 45676 78899999999999999999999999988 445 6788999999999999999999999999874 45
Q ss_pred C-HHHHHHHHHHH
Q 038112 607 T-TITWHILVRAV 618 (625)
Q Consensus 607 ~-~~~~~~l~~~~ 618 (625)
+ ...+..+..+|
T Consensus 582 ~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 582 NEIMASDLLKRAL 594 (597)
T ss_dssp TCHHHHHHHHHTT
T ss_pred CChHHHHHHHHHH
Confidence 4 45555555544
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.8e-40 Score=337.12 Aligned_cols=488 Identities=11% Similarity=0.026 Sum_probs=414.1
Q ss_pred CCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCC
Q 038112 36 HSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQ 115 (625)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 115 (625)
++...|..++..+.+.|++++|..+|++++...+ +...+..++.+|.+.|++++|+.+|+++..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------- 145 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITG--NPNDAFWLAQVYCCTGDYARAKCLLTKEDL-------------- 145 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--------------
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCC--CchHHHHHHHHHHHcCcHHHHHHHHHHHhc--------------
Confidence 5678889999999999999999999999998753 668888999999999999999999998732
Q ss_pred hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC---------------CCCCCchhhHHHHHHH
Q 038112 116 FEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER---------------GVETNVVCYNILIDGF 180 (625)
Q Consensus 116 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~ 180 (625)
.+++..+++.++.++.+.|++++|+.+|+++... +.+.+..+|..++.+|
T Consensus 146 ---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (597)
T 2xpi_A 146 ---------------YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVY 210 (597)
T ss_dssp ---------------GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHH
T ss_pred ---------------cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHH
Confidence 2568889999999999999999999999953322 1233578999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHH--H-HHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 038112 181 FKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLE--M-WDRMKKNEREKDSFTYCSFIHGLCKAGNV 257 (625)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 257 (625)
.+.|++++|++.|+++.+.+ +.+...+..++..+...+..+.+.. + +..+...++.....+|..++..|.+.|++
T Consensus 211 ~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 288 (597)
T 2xpi_A 211 TNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDEL 288 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchH
Confidence 99999999999999998864 3445566666655554443332221 1 44454444444555677778889999999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 038112 258 EGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLR 337 (625)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 337 (625)
++|.++|+++.+. +++..++..++.+|.+.|++++|.++|+++...++.+..++..++.++.+.|++++|..+++.+.
T Consensus 289 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
T 2xpi_A 289 RRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366 (597)
T ss_dssp HHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999875 57999999999999999999999999999999988899999999999999999999999999999
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHH
Q 038112 338 EKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENA 417 (625)
Q Consensus 338 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 417 (625)
... +.+..++..++..|.+.|++++|.++|++ +.... +.+..+|+.++..|.+.|++++|
T Consensus 367 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------------------~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 426 (597)
T 2xpi_A 367 DRH-PEKAVTWLAVGIYYLCVNKISEARRYFSK------------------SSTMD-PQFGPAWIGFAHSFAIEGEHDQA 426 (597)
T ss_dssp HHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHH------------------HHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hhC-cccHHHHHHHHHHHHHhccHHHHHHHHHH------------------HHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 764 34788899999999999999999999994 33322 34678999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 038112 418 IFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQK 497 (625)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 497 (625)
.++|+++.+.++ .+..+|..++.+|.+.|++++|..+|+++.+.. +.+..++..++..|.+.|++++|.++|+++.+.
T Consensus 427 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 427 ISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999998743 478899999999999999999999999999863 457889999999999999999999999999875
Q ss_pred ----CCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 038112 498 ----GFTPD--VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP 571 (625)
Q Consensus 498 ----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 571 (625)
+..|+ ..+|..++.+|.+.|++++|..+++++.+.+ +.+..+|..++.+|...|++++|.++|+++++ +.|
T Consensus 505 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p 581 (597)
T 2xpi_A 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISP 581 (597)
T ss_dssp HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCT
T ss_pred hhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCC
Confidence 55777 7899999999999999999999999999864 55899999999999999999999999999999 677
Q ss_pred C-HHHHHHHHHHH
Q 038112 572 D-IISYNITLKGL 583 (625)
Q Consensus 572 ~-~~~~~~l~~~~ 583 (625)
+ ...+..+..+|
T Consensus 582 ~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 582 NEIMASDLLKRAL 594 (597)
T ss_dssp TCHHHHHHHHHTT
T ss_pred CChHHHHHHHHHH
Confidence 4 56666666554
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=7.7e-30 Score=246.43 Aligned_cols=377 Identities=15% Similarity=0.065 Sum_probs=331.8
Q ss_pred HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112 7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN 86 (625)
Q Consensus 7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (625)
.++..+.++|++++|+..|+.+++.. |.++.++..++..+...|++++|...++.+++.. |.+...+..++..+.+.
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKER 80 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence 36788899999999999999999887 8999999999999999999999999999999986 45889999999999999
Q ss_pred CCchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHH
Q 038112 87 SMPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFD 159 (625)
Q Consensus 87 ~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 159 (625)
|++++|+..|+++....|..+.+ +.+.|++++|...|++++..+ |.+...+..+...+...|++++|...|+
T Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999999999888877664 788999999999999999876 5566778888899999999999999999
Q ss_pred HHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 038112 160 EMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREK 239 (625)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 239 (625)
++.+.. +.+..+|..++.++...|++++|...|+++.+.. +.+...+..+...+...|++++|+..+++.....+ .
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~ 235 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-N 235 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-T
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-C
Confidence 999874 3367889999999999999999999999999864 45667899999999999999999999999987654 4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 038112 240 DSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRG 319 (625)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 319 (625)
+..++..++..+...|++++|+..|+++++..+. +..++..++.++.+.|++++|.+.|+.+....|.+..++..++..
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 6788999999999999999999999999987543 678899999999999999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHH
Q 038112 320 LLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAY 399 (625)
Q Consensus 320 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 399 (625)
+...|++++|...++++.+..+ .+..++..+...+...|++++|...++++. ... +.+..
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~------------------~~~-p~~~~ 374 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAI------------------RIS-PTFAD 374 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHH------------------TTC-TTCHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------hhC-CCCHH
Confidence 9999999999999999998743 367788899999999999999999999543 322 23556
Q ss_pred HHHHHHHHHHhcC
Q 038112 400 TCNSLMNGFIQAS 412 (625)
Q Consensus 400 ~~~~l~~~~~~~~ 412 (625)
.+..+...+...|
T Consensus 375 a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 375 AYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHhHHHHHHHcc
Confidence 6666666655544
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.5e-29 Score=242.81 Aligned_cols=213 Identities=17% Similarity=0.156 Sum_probs=95.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc
Q 038112 401 CNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQ 480 (625)
Q Consensus 401 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 480 (625)
+..+...+...|++++|...|+++.+.++ .+...+..+...+...|++++|...+++..... +.+..++..++..+..
T Consensus 172 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 249 (388)
T 1w3b_A 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYE 249 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHH
Confidence 33333334444444444444444433221 123334444444444444444444444444421 1123444444444445
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHH
Q 038112 481 SKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEI 560 (625)
Q Consensus 481 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 560 (625)
.|++++|...++++++.+ +.+..++..++.++...|++++|...|+++.+. .+.+..++..++.++...|++++|...
T Consensus 250 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (388)
T 1w3b_A 250 QGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRL 327 (388)
T ss_dssp TTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555444432 223444445555555555555555555555443 233444555555555555555555555
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 038112 561 WNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPT-TITWHILVRAVMNN 621 (625)
Q Consensus 561 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 621 (625)
++++++ ..| +..++..++.+|.+.|++++|.+.++++++ +.|+ ...|..+...+...
T Consensus 328 ~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 328 YRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHc
Confidence 555544 333 234444555555555555555555555543 2232 33444444444433
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.2e-28 Score=238.58 Aligned_cols=185 Identities=16% Similarity=0.186 Sum_probs=109.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCC---------HHHHHHHHHHHHhCCCCCCHHHH
Q 038112 436 YNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKK---------IDMALKLCCQFLQKGFTPDVTMY 506 (625)
Q Consensus 436 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~~~~~~~~~~~~~~ 506 (625)
++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.+. +++|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 445555555555555555555555555555555555555555544332 45556666666666666666666
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 038112 507 NILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSC 586 (625)
Q Consensus 507 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 586 (625)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 038112 587 SRMSDAFEFLNDALCRGILPTTITWHILVRAVMN 620 (625)
Q Consensus 587 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 620 (625)
|+.++|.+++++|.+.|..|+..||+.++..++.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666665666666666666555543
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2e-27 Score=231.78 Aligned_cols=199 Identities=16% Similarity=0.249 Sum_probs=181.8
Q ss_pred HHhhCCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCC---------HHHHHHHHH
Q 038112 388 RMDKHGCKLNA-YTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVER---------FGEAYSFVK 457 (625)
Q Consensus 388 ~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~ 457 (625)
.+.+.+....+ .+++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.+. .++|.++|+
T Consensus 15 ~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~ 94 (501)
T 4g26_A 15 KAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFK 94 (501)
T ss_dssp ---------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHH
T ss_pred HHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHH
Confidence 55555554443 46888999999999999999999999999999999999999999987654 688999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 038112 458 EMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN 537 (625)
Q Consensus 458 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 537 (625)
+|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 95 ~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 95 QMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 038112 538 LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSC 586 (625)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 586 (625)
..+|+.|+.+|.+.|+.++|.+++++|.+.|..|+..||..++..|...
T Consensus 175 ~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 175 EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999888753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.2e-25 Score=224.40 Aligned_cols=432 Identities=11% Similarity=-0.030 Sum_probs=286.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHH
Q 038112 112 RKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKE 191 (625)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 191 (625)
+.|++++|+..|++++..+ |+..+|..++.++.+.|++++|+..++++.+.+ +.+..++..++.++...|++++|..
T Consensus 18 ~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 94 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMF 94 (514)
T ss_dssp HTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444444444445444 578888888888888999999999999888874 3366788888888889999999999
Q ss_pred HHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038112 192 IWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESG 271 (625)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 271 (625)
.|+.+.... +++......++..+........+.+.+..+...+..|+...+..................+...+....
T Consensus 95 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
T 2gw1_A 95 DLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172 (514)
T ss_dssp HHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSC
T ss_pred HHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcC
Confidence 998888764 344444444444444433333333333222211111111111100000000011111111111111111
Q ss_pred C---------CcCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----c--C-------CCcHHHHHHHHHHHHhCCC
Q 038112 272 I---------FVDAVTYNAMIDGFCR---AGKIKECFELWEVMGR-----K--G-------CLNVVSYNILIRGLLENGK 325 (625)
Q Consensus 272 ~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~--~-------~~~~~~~~~l~~~~~~~~~ 325 (625)
. +.+...+......+.. .|++++|+..|+.+.. . . +.+..++..++..+...|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (514)
T 2gw1_A 173 PELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND 252 (514)
T ss_dssp CCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC
Confidence 0 1124555555555554 7888888888888877 3 2 2356778888888888899
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHH
Q 038112 326 VDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLM 405 (625)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 405 (625)
+++|...++++....+. ...+..+...+...|++++|...++++. ... +.+..++..+.
T Consensus 253 ~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------------~~~-~~~~~~~~~l~ 311 (514)
T 2gw1_A 253 PLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKAL------------------KLD-SNNSSVYYHRG 311 (514)
T ss_dssp HHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHH------------------TTC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHh------------------hcC-cCCHHHHHHHH
Confidence 99999998888887544 6777778888888888888888888433 222 23556778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHH
Q 038112 406 NGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKID 485 (625)
Q Consensus 406 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 485 (625)
..+...|++++|...|+++....+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 312 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHH
Confidence 8888889999999999888876433 56678888888888999999999998888752 335667788888888899999
Q ss_pred HHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHH
Q 038112 486 MALKLCCQFLQKGFT-PD----VTMYNILIHGLCS---AGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKA 557 (625)
Q Consensus 486 ~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 557 (625)
+|...++++.+.... ++ ...+..++.++.. .|++++|...++++.... +.+..++..++.++...|++++|
T Consensus 390 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 468 (514)
T 2gw1_A 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEA 468 (514)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHH
Confidence 999988888764211 11 3378888888888 899999999998888752 44677888888999999999999
Q ss_pred HHHHHHHHHcCCCCCHH
Q 038112 558 LEIWNHILEERLRPDII 574 (625)
Q Consensus 558 ~~~~~~~~~~~~~p~~~ 574 (625)
...|+++++ +.|+..
T Consensus 469 ~~~~~~a~~--~~~~~~ 483 (514)
T 2gw1_A 469 ITLFEESAD--LARTME 483 (514)
T ss_dssp HHHHHHHHH--HCSSHH
T ss_pred HHHHHHHHH--hccccH
Confidence 999999888 667553
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.8e-25 Score=223.64 Aligned_cols=442 Identities=9% Similarity=-0.029 Sum_probs=328.4
Q ss_pred HhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHH
Q 038112 135 VYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMIN 214 (625)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 214 (625)
...+......+.+.|++++|+..|+++.+.+ |++.++..++.++...|++++|+..++.+.+.. +.+..++..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHH
Confidence 4567777888999999999999999999885 588899999999999999999999999998863 556678999999
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 038112 215 GLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKE 294 (625)
Q Consensus 215 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (625)
++...|++++|...|+++...++ ++......++..+........+.+.+..+...+..|+...................
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 99999999999999999988764 34444444454444433333333333222221111111111000000001111111
Q ss_pred HHHHHHHHHhc----------CCCcHHHHHHHHHHHHh---CCCHHHHHHHHHHHHH-----cCCC--------CChhhH
Q 038112 295 CFELWEVMGRK----------GCLNVVSYNILIRGLLE---NGKVDEAISIWELLRE-----KNCN--------ADSTTH 348 (625)
Q Consensus 295 a~~~~~~~~~~----------~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~--------~~~~~~ 348 (625)
...+...+... .+.+...+......+.. .|++++|+..++++.. .... .+...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 11111111111 12346777777777775 8999999999999988 3111 134567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038112 349 GVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKG 428 (625)
Q Consensus 349 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 428 (625)
..+...+...|++++|...+++ ....... ...+..+...+...|++++|...++++....
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~------------------~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 300 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKK------------------AIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD 300 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHH------------------HHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHH------------------HHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC
Confidence 7788899999999999999984 3333323 7788899999999999999999999998864
Q ss_pred CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038112 429 CSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNI 508 (625)
Q Consensus 429 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 508 (625)
+ .+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..
T Consensus 301 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 377 (514)
T 2gw1_A 301 S-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNF 377 (514)
T ss_dssp T-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHH
T ss_pred c-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHH
Confidence 3 367788999999999999999999999999863 3356788899999999999999999999998863 446788899
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHc---cCChhHHHHHHHHHHHcCCCC-CHHHHHH
Q 038112 509 LIHGLCSAGKVEDALQLYSNMKKRNCVPN------LVTYNTLMDGLFK---TGDCDKALEIWNHILEERLRP-DIISYNI 578 (625)
Q Consensus 509 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ 578 (625)
++.++...|++++|...++++.+.. +.+ ...+..++.++.. .|++++|...++++++ ..| +..++..
T Consensus 378 la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~ 454 (514)
T 2gw1_A 378 FAEILTDKNDFDKALKQYDLAIELE-NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK--LDPRSEQAKIG 454 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH--hCcccHHHHHH
Confidence 9999999999999999999998742 112 3489999999999 9999999999999998 456 5678889
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHCCCCCCHH
Q 038112 579 TLKGLCSCSRMSDAFEFLNDALCRGILPTTI 609 (625)
Q Consensus 579 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (625)
++.+|.+.|++++|.+.++++++. .|+..
T Consensus 455 la~~~~~~g~~~~A~~~~~~a~~~--~~~~~ 483 (514)
T 2gw1_A 455 LAQMKLQQEDIDEAITLFEESADL--ARTME 483 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh--ccccH
Confidence 999999999999999999999974 46543
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=3.7e-25 Score=223.97 Aligned_cols=431 Identities=13% Similarity=0.028 Sum_probs=319.4
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK 85 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (625)
..++..+..+|++++|+..|+.++..+ |.++.++..++.++.+.|++++|.+.++++++.+| .+...+..++.++..
T Consensus 29 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHH
Confidence 456788999999999999999999888 89999999999999999999999999999999974 588899999999999
Q ss_pred cCCchHHHHHHHHhHHhhCCCcch----hhhcCChHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHhcCChhhHHHHHH
Q 038112 86 NSMPDKALDVFQRMNEIFGCEAGI----LCRKRQFEKAKRFLNSLWEKGL--KPDVYSYGTVINGLVKSGDLLGALAVFD 159 (625)
Q Consensus 86 ~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 159 (625)
.|++++|+..|+ .....|..... +...+....|...+++++.... .+........+..+....+...+...+.
T Consensus 106 ~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 106 LGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred cCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 999999999997 43444443333 6667778889999998865420 0111112233344455556555544443
Q ss_pred HHHhCCCCCCch-hhHHHHHHHH--------hcCChhHHHHHHHHHHhCCCCCCC-------cchHHHHHHHHHhcCChh
Q 038112 160 EMFERGVETNVV-CYNILIDGFF--------KKGDYMRAKEIWERLVMETSVYPN-------VVTYNVMINGLCKCGRFD 223 (625)
Q Consensus 160 ~~~~~~~~~~~~-~~~~l~~~~~--------~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~ 223 (625)
..... .+... ....+...+. ..|++++|...++.+.+.. +.+ ..++..+...+...|+++
T Consensus 185 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 185 TSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp CCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 32221 11111 2222332222 2258899999999998764 222 224667778899999999
Q ss_pred hHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112 224 ECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMG 303 (625)
Q Consensus 224 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 303 (625)
+|...++++.... |+...+..+...+...|++++|...++++.+..+. +..++..++.++...|++++|.+.++.+.
T Consensus 261 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 261 DAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999998875 44788889999999999999999999999987543 78889999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHH
Q 038112 304 RKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAA 383 (625)
Q Consensus 304 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~ 383 (625)
...|.+..++..++.++...|++++|...++++....+. +...+..+...+...|++++|...++++....
T Consensus 338 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-------- 408 (537)
T 3fp2_A 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE-------- 408 (537)
T ss_dssp HHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--------
Confidence 999889999999999999999999999999999988533 66788889999999999999999999654311
Q ss_pred HHHHHHhhCCCCccHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHH
Q 038112 384 SLVNRMDKHGCKLNAYTCNSLMNGFIQA----------SKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAY 453 (625)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 453 (625)
-...........+......+... |++++|...|+++.+..+ .+...+..+..++...|++++|.
T Consensus 409 -----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 409 -----EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp -----HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHH
Confidence 00111111222344445566666 888888888888776532 25567777777788888888888
Q ss_pred HHHHHHHHC
Q 038112 454 SFVKEMLEK 462 (625)
Q Consensus 454 ~~~~~~~~~ 462 (625)
..|+++.+.
T Consensus 483 ~~~~~al~~ 491 (537)
T 3fp2_A 483 ELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888887774
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=3.3e-24 Score=211.71 Aligned_cols=324 Identities=12% Similarity=0.062 Sum_probs=248.0
Q ss_pred hHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHH
Q 038112 19 HTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQR 98 (625)
Q Consensus 19 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 98 (625)
..+...+..++..+ |.++..+..++..+.+.|++++|...|+.+++.. |.+...+..++.++...|++++|...|++
T Consensus 9 ~~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 9 SGVDLGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44555556656555 7778888888888888888888888888888775 34677888888888888888888888888
Q ss_pred hHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCCCCH---hHHHHH------------HHHHHhcCChhhHHH
Q 038112 99 MNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKPDV---YSYGTV------------INGLVKSGDLLGALA 156 (625)
Q Consensus 99 ~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~ 156 (625)
+.+..|..+.+ +...|++++|...|+++...+ +.+. ..+..+ ...+...|++++|+.
T Consensus 86 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 86 VIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 87776666554 667788888888888887765 3334 455544 444788999999999
Q ss_pred HHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 038112 157 VFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNE 236 (625)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 236 (625)
.|+++.+.. +.+..++..++.++...|++++|++.|+.+.+. .+.+..++..++.++...|++++|+..|+++....
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999998874 347788889999999999999999999998876 35567889999999999999999999999988764
Q ss_pred CCCChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 038112 237 REKDSFTYCSF------------IHGLCKAGNVEGAERVYREMVESGIFVD----AVTYNAMIDGFCRAGKIKECFELWE 300 (625)
Q Consensus 237 ~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 300 (625)
+ .+...+..+ +..+...|++++|...|+++++..+. + ...+..++.++.+.|++++|+..++
T Consensus 242 p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 Q-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred C-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3 244444444 78889999999999999999886432 2 3477888899999999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038112 301 VMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLI 352 (625)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 352 (625)
.+....|.+..+|..++.++...|++++|...++++.+..+. +...+..+.
T Consensus 320 ~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 370 (450)
T 2y4t_A 320 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLE 370 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 999888889999999999999999999999999999886433 444554444
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1e-23 Score=208.15 Aligned_cols=313 Identities=15% Similarity=0.123 Sum_probs=141.8
Q ss_pred CchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHH
Q 038112 169 NVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFI 248 (625)
Q Consensus 169 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 248 (625)
+...+..++..+.+.|++++|+..|+.+.+. .+.+..++..++.++...|++++|+..|+++.+.++ .+..++..++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHH
Confidence 4445555555555555555555555555543 233444555555555555555555555555554432 2344555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCC
Q 038112 249 HGLCKAGNVEGAERVYREMVESGIFVDA---VTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGK 325 (625)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 325 (625)
..|...|++++|...|+++.+..+. +. ..+..+...+.. ..+..++..+...|+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH----------------------HHHHHHHHHHHHcCC
Confidence 5555555555555555555543211 22 333333222000 001111222344444
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHH
Q 038112 326 VDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLM 405 (625)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 405 (625)
+++|+..|+++....+. +...+..++..+...|++++|...++++. ... +.+..++..++
T Consensus 159 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------------~~~-~~~~~~~~~l~ 218 (450)
T 2y4t_A 159 YTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAAS------------------KLK-NDNTEAFYKIS 218 (450)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHH------------------HHH-CSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHH------------------HhC-CCCHHHHHHHH
Confidence 44444444444433211 33333444444444444444444444211 100 11334444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH------------HHHHHhccCCHHHHHHHHHHHHHCCCCCC-----H
Q 038112 406 NGFIQASKLENAIFLFKEMSRKGCSPTVVSYNT------------LINGLCKVERFGEAYSFVKEMLEKGWKPD-----M 468 (625)
Q Consensus 406 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~ 468 (625)
..|...|++++|...|+++....+. +...+.. ++..+...|++++|...++++.+. .|+ .
T Consensus 219 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~ 295 (450)
T 2y4t_A 219 TLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTV 295 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHH
Confidence 4444455555555555444433111 1112222 144455555555555555555542 222 2
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 038112 469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKK 531 (625)
Q Consensus 469 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 531 (625)
..+..++..+.+.|++++|...++++.+.. +.+...+..++.+|...|++++|...++++.+
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 244445555555555555555555555432 22445555555555555555555555555555
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=2e-23 Score=211.22 Aligned_cols=429 Identities=10% Similarity=0.010 Sum_probs=301.3
Q ss_pred hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHH
Q 038112 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA 189 (625)
Q Consensus 110 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 189 (625)
+.+.|++++|+..|++++..+ |.+..+|..+..++.+.|++++|+..|+++.+.+ +.+..++..++.++...|++++|
T Consensus 35 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A 112 (537)
T 3fp2_A 35 FFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDA 112 (537)
T ss_dssp HHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHH
Confidence 777788888888888887765 5567777788888888888888888888887764 33667777788888888888888
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038112 190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNER--EKDSFTYCSFIHGLCKAGNVEGAERVYREM 267 (625)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 267 (625)
+..|+.+ ... |+. ....+..+...+....|...++.+....+ .+........+..+....+.+.+...+...
T Consensus 113 ~~~~~~~-~~~---~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 113 MFDLSVL-SLN---GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp HHHHHHH-C----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred HHHHHHH-hcC---CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 8887633 221 221 11223344555556777777777764321 011111223344455555555555444332
Q ss_pred HHCCCCcCH-HHHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCcHH-------HHHHHHHHHHhCCCHHHHHH
Q 038112 268 VESGIFVDA-VTYNAMIDGFCR--------AGKIKECFELWEVMGRKGCLNVV-------SYNILIRGLLENGKVDEAIS 331 (625)
Q Consensus 268 ~~~~~~~~~-~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~ 331 (625)
... .+.. .....+...+.. .|++++|..+++.+....|.+.. ++..+...+...|++++|..
T Consensus 187 ~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 187 SNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 221 1221 122333333222 25789999999999988887644 46677788888999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhc
Q 038112 332 IWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQA 411 (625)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (625)
.++.+.... |+...+..+...+...|+++.|...++++. ... +.+..++..+...+...
T Consensus 265 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------------~~~-~~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 265 LLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAV------------------DLN-PEYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHH------------------HHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHh------------------ccC-CCCHHHHHHHHHHHHhc
Confidence 999999874 447778888889999999999999998533 222 23677888999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHH
Q 038112 412 SKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLC 491 (625)
Q Consensus 412 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 491 (625)
|++++|...|+++.+..+. +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...+
T Consensus 324 ~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999876432 56788889999999999999999999998863 445678888899999999999999999
Q ss_pred HHHHhCC-----CCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhH
Q 038112 492 CQFLQKG-----FTPDVTMYNILIHGLCSA----------GKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDK 556 (625)
Q Consensus 492 ~~~~~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 556 (625)
+++.+.. .......+..++.++... |++++|...++++.+. .+.+..++..++.++...|++++
T Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-DPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccHHH
Confidence 9987632 111233345556777777 9999999999999986 35568889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHH
Q 038112 557 ALEIWNHILEERLRPDII 574 (625)
Q Consensus 557 A~~~~~~~~~~~~~p~~~ 574 (625)
|...|+++++ +.|+..
T Consensus 481 A~~~~~~al~--~~~~~~ 496 (537)
T 3fp2_A 481 AIELFEDSAI--LARTMD 496 (537)
T ss_dssp HHHHHHHHHH--HC--CH
T ss_pred HHHHHHHHHH--hCCCcH
Confidence 9999999999 566543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=5.7e-22 Score=189.38 Aligned_cols=326 Identities=15% Similarity=0.065 Sum_probs=250.1
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK 85 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (625)
-.++..+...|++++|+..|+.++... |.++.++..++.++...|++++|...++.+++.. |.+...+..++.++..
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHH
Confidence 457788899999999999999998877 8889999999999999999999999999999886 4477888999999999
Q ss_pred cCCchHHHHHHHHhHHhhC---CCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHH
Q 038112 86 NSMPDKALDVFQRMNEIFG---CEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMF 162 (625)
Q Consensus 86 ~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 162 (625)
.|++++|...|+++.+..| ..+.++...+.... ...+......+...|++++|+..++++.
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 147 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE----------------MQRLRSQALDAFDGADYTAAITFLDKIL 147 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH----------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999999998866544 33322221111111 1123334567778888888888888888
Q ss_pred hCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChh
Q 038112 163 ERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSF 242 (625)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 242 (625)
+.. +.+...+..++.++...|++++|...++.+.+.. +.+..++..++..+...|++++|...+++..+..+ .+..
T Consensus 148 ~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~ 223 (359)
T 3ieg_A 148 EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK--SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKR 223 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchH
Confidence 774 3467778888888888888888888888888763 55667788888888888888888888888876543 2333
Q ss_pred hHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038112 243 TYC------------SFIHGLCKAGNVEGAERVYREMVESGIFVDA----VTYNAMIDGFCRAGKIKECFELWEVMGRKG 306 (625)
Q Consensus 243 ~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 306 (625)
.+. .++..+...|++++|...++++.+..+. +. ..+..+..++...|++++|.+.++.+....
T Consensus 224 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 302 (359)
T 3ieg_A 224 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 332 2366788899999999999998876433 33 235567788889999999999999998888
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038112 307 CLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLC 356 (625)
Q Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 356 (625)
|.+..++..++.++...|++++|...|+++.+..+. +......+..+..
T Consensus 303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQR 351 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence 888899999999999999999999999999887433 4555555555543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=3.3e-21 Score=184.07 Aligned_cols=310 Identities=11% Similarity=0.027 Sum_probs=254.4
Q ss_pred CHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCCh
Q 038112 37 SPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQF 116 (625)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 116 (625)
++..+..++..+...|++++|...|+.+++..| .+...+..++.++...|++++|...|+++.+..|
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------------ 68 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM------------ 68 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------------
Confidence 467788899999999999999999999999864 5788999999999999999999999988855333
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC--CCchhhHHH------------HHHHHh
Q 038112 117 EKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVE--TNVVCYNIL------------IDGFFK 182 (625)
Q Consensus 117 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~ 182 (625)
.+...+..+...+...|++++|...|+++.+..+. .+...+..+ +..+..
T Consensus 69 ----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 69 ----------------DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD 132 (359)
T ss_dssp ----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777777665320 133344433 688999
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 038112 183 KGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAER 262 (625)
Q Consensus 183 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 262 (625)
.|++++|.+.++.+.+.. +.+...+..+..++...|++++|...++++....+ .+..++..++..+...|++++|..
T Consensus 133 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 209 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLS 209 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999998873 56677899999999999999999999999997754 578889999999999999999999
Q ss_pred HHHHHHHCCCCcCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH----HHHHHHHHHHhCCCH
Q 038112 263 VYREMVESGIFVDAVTYN------------AMIDGFCRAGKIKECFELWEVMGRKGCLNVV----SYNILIRGLLENGKV 326 (625)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~ 326 (625)
.++.+.+..+. +...+. .++..+.+.|++++|.+.++.+....|.+.. .+..+..++...|++
T Consensus 210 ~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 210 EVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCH
Confidence 99999986433 334332 3367799999999999999999998887653 456788999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH
Q 038112 327 DEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLA 380 (625)
Q Consensus 327 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 380 (625)
++|...++...+..+. +...+..+...+...|++++|...++++.+..+....
T Consensus 289 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 289 VEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence 9999999999987433 6788899999999999999999999999988776544
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.90 E-value=3.5e-18 Score=176.61 Aligned_cols=314 Identities=11% Similarity=0.143 Sum_probs=226.9
Q ss_pred HHHHccCChhHHHHHHHhhccCCC-CCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCC
Q 038112 10 NLLKAEKNPHTALALFDSATREPG-YAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSM 88 (625)
Q Consensus 10 ~~l~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (625)
+.+...|.+.+|+.+|+.+...+. +..+...-..++.+..+. +.....++....... ....++..+...|.
T Consensus 993 Kaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAISNEL 1064 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHHhCCC
Confidence 455567777777777777764432 234444444455555544 334444443333311 12336778888999
Q ss_pred chHHHHHHHHhHHhhCCCcchhh-hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 038112 89 PDKALDVFQRMNEIFGCEAGILC-RKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVE 167 (625)
Q Consensus 89 ~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 167 (625)
+++|..+|++.. .+.....++. ..+++++|.++++++ .++.+|..+..++.+.|++++|+..|.+.
T Consensus 1065 yEEAf~IYkKa~-~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------ 1131 (1630)
T 1xi4_A 1065 FEEAFAIFRKFD-VNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------ 1131 (1630)
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------
Confidence 999999998872 2222223344 778888888888866 24678889999999999999999998664
Q ss_pred CCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHH
Q 038112 168 TNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSF 247 (625)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 247 (625)
.|...|..++.++.+.|++++|++.+....+.. ++....+.++.+|.+.+++++..... . .++...|..+
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~i 1201 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQV 1201 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHH
Confidence 377888889999999999999999998777643 34444446888888888888544332 1 3466677778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHH
Q 038112 248 IHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVD 327 (625)
Q Consensus 248 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 327 (625)
...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+++.. +..+|..+..+|...|++.
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-----n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-----CHHHHHHHHHHHhhhhHHH
Confidence 88999999999999999874 478888999999999999999998773 6788888888888888888
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038112 328 EAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEE 373 (625)
Q Consensus 328 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 373 (625)
.|...... +..++..+..++..|.+.|.+++|+.+++....
T Consensus 1268 LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1268 LAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88876553 223566677888889999999999999886544
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.90 E-value=7.5e-19 Score=174.51 Aligned_cols=364 Identities=13% Similarity=0.044 Sum_probs=284.3
Q ss_pred HHHHHHHHHhCCCCCCchhhHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHh----cCChhhH
Q 038112 154 ALAVFDEMFERGVETNVVCYNILIDGFFK----KGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCK----CGRFDEC 225 (625)
Q Consensus 154 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 225 (625)
+...+....+.| ++..+..+...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 345555554443 66777777777777 788888888888887653 55677778888887 7888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHHH
Q 038112 226 LEMWDRMKKNEREKDSFTYCSFIHGLCK----AGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR----AGKIKECFE 297 (625)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~ 297 (625)
+++|++..+.+ ++..+..+...|.. .+++++|+..|++..+.+ ++..+..+...|.. .+++++|++
T Consensus 99 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 99 VIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 88888887653 56667777777777 778888888888888765 56777778888876 778888888
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHH
Q 038112 298 LWEVMGRKGCLNVVSYNILIRGLLE----NGKVDEAISIWELLREKNCNADSTTHGVLINGLCK----NGYLNKAIQILN 369 (625)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 369 (625)
.|+.....+ ++.++..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|..+++
T Consensus 173 ~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 173 WYSKAAEQG--NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHCC--CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 888887763 67788888888887 788889998888888765 55666777777765 778888888887
Q ss_pred HHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 038112 370 EVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQ----ASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCK 445 (625)
Q Consensus 370 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 445 (625)
+ ....+ ++..+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 248 ~------------------a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~ 303 (490)
T 2xm6_A 248 Q------------------SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDK 303 (490)
T ss_dssp H------------------HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHH
T ss_pred H------------------HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc
Confidence 4 33332 44556667777777 789999999999988753 55677777777777
Q ss_pred c-----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--
Q 038112 446 V-----ERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSK---KIDMALKLCCQFLQKGFTPDVTMYNILIHGLCS-- 515 (625)
Q Consensus 446 ~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 515 (625)
. +++++|+.++++..+.+ +...+..+...|...| ++++|.+.|++..+.+ +...+..+..+|..
T Consensus 304 ~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~ 377 (490)
T 2xm6_A 304 GAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGK 377 (490)
T ss_dssp CBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred CCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 6 89999999999998864 4566777777777656 7899999999999864 67888889999988
Q ss_pred --CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcC
Q 038112 516 --AGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK----TGDCDKALEIWNHILEER 568 (625)
Q Consensus 516 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 568 (625)
.+++++|..+|++..+.+ ++..+..|+..|.. .+++++|...|+++.+.+
T Consensus 378 g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 378 GVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 899999999999999865 67788899999988 899999999999999954
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.89 E-value=2.3e-17 Score=170.58 Aligned_cols=505 Identities=13% Similarity=0.128 Sum_probs=305.2
Q ss_pred HHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCC-hhHHHH---------HHHHHHHhcCCCCHH
Q 038112 5 AKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKL-VVHVSR---------ILELIEIQKCYCPED 74 (625)
Q Consensus 5 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~---------~~~~~~~~~~~~~~~ 74 (625)
..+|....-+.+++..-+..++.-+... ..++.++.+++..|...++ ++.-++ +=+-..+++|...--
T Consensus 842 ~~~lv~~~ekrnrLkll~p~LE~~~~~g--~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~i 919 (1630)
T 1xi4_A 842 TDELVAEVEKRNRLKLLLPWLEARIHEG--CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACV 919 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHH
Confidence 4566666666677777777777755554 7889999999999987554 333211 222222232211000
Q ss_pred HH------HHHHHHHHccCCchHHHHHH-HHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCC--CCCHhHHHHHHHHH
Q 038112 75 VA------LSVIQAYGKNSMPDKALDVF-QRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGL--KPDVYSYGTVINGL 145 (625)
Q Consensus 75 ~~------~~l~~~~~~~~~~~~A~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~ 145 (625)
.| .-+++...+.+.|+..-+++ ++. ....+...-..+-+-=+.+.++.....+ ..++.--...+++|
T Consensus 920 ay~~g~~d~eli~vt~~n~l~k~~arylv~r~----d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf 995 (1630)
T 1xi4_A 920 AYERGQCDLELINVCNENSLFKSLSRYLVRRK----DPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAF 995 (1630)
T ss_pred HhcccCCcHHHHHHHhcchhHHHHHHHHHHhc----CHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHH
Confidence 00 12333444444443322211 110 0000010001111111122222211111 12223334456667
Q ss_pred HhcCChhhHHHHHHHHHhCCC--CCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChh
Q 038112 146 VKSGDLLGALAVFDEMFERGV--ETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFD 223 (625)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 223 (625)
...|.+.+|+++++++.-.+. .-+...-+.++.+..+. +..+..+....+.. .....+...+...|.++
T Consensus 996 ~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~--------~d~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 996 MTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN--------YDAPDIANIAISNELFE 1066 (1630)
T ss_pred HhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--------ccHHHHHHHHHhCCCHH
Confidence 778888888888888773311 12234444455555555 44555555544321 11344667777788888
Q ss_pred hHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112 224 ECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMG 303 (625)
Q Consensus 224 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 303 (625)
+|..+|++.. ........++. ..+++++|.++.++. -++.+|..++.++...|++++|++.|.+.
T Consensus 1067 EAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1067 EAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 8888887752 12222222222 567788888777754 15677778888888888888888888554
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHH
Q 038112 304 RKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAA 383 (625)
Q Consensus 304 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~ 383 (625)
.+...|..++.++.+.|++++|++.+...++... ++.....++.+|.+.++++.....+.
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~fI~-------------- 1191 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFIN-------------- 1191 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHHh--------------
Confidence 4777777788888888888888888877776642 22223347777777777765333322
Q ss_pred HHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 038112 384 SLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKG 463 (625)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 463 (625)
.++...+..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++..
T Consensus 1192 -----------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~--- 1248 (1630)
T 1xi4_A 1192 -----------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--- 1248 (1630)
T ss_pred -----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC---
Confidence 234556667888888888888888888774 367888888888888888888888762
Q ss_pred CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038112 464 WKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNT 543 (625)
Q Consensus 464 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 543 (625)
+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +.....|+.
T Consensus 1249 ---n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftE 1319 (1630)
T 1xi4_A 1249 ---STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTE 1319 (1630)
T ss_pred ---CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHH
Confidence 5577888888888888888887766542 3356667788888888888888888888877653 334556666
Q ss_pred HHHHHHcc--CChhHHHHHHHHHHHcCCCC------CHHHHHHHHHHHhhcCChHHHH
Q 038112 544 LMDGLFKT--GDCDKALEIWNHILEERLRP------DIISYNITLKGLCSCSRMSDAF 593 (625)
Q Consensus 544 l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~ 593 (625)
|+..+.+. ++..++.++|..-.. ++| +...|..++..|.+.|+++.|.
T Consensus 1320 LaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 66666653 455556666554443 333 4466777888888888888877
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=4.6e-18 Score=168.87 Aligned_cols=394 Identities=13% Similarity=0.040 Sum_probs=307.8
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHh----cCChhHHHH
Q 038112 120 KRFLNSLWEKGLKPDVYSYGTVINGLVK----SGDLLGALAVFDEMFERGVETNVVCYNILIDGFFK----KGDYMRAKE 191 (625)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~ 191 (625)
...+++....+ ++..+..+...+.. .++++.|...|++..+.| ++..+..+...|.. .+++++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 34444444443 67777888888877 789999999999988774 56788888888888 889999999
Q ss_pred HHHHHHhCCCCCCCcchHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHH
Q 038112 192 IWERLVMETSVYPNVVTYNVMINGLCK----CGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCK----AGNVEGAERV 263 (625)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 263 (625)
.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ ++..+..+...|.. .+++++|++.
T Consensus 101 ~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 101 WYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 999988754 56677788888888 789999999999888754 56677778888877 7899999999
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh----CCCHHHHHHHHHH
Q 038112 264 YREMVESGIFVDAVTYNAMIDGFCR----AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLE----NGKVDEAISIWEL 335 (625)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 335 (625)
|++..+.+ +...+..+...|.. .+++++|.++|+.....+ ++.++..+...+.. .+++++|..+|++
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 99998874 67888888888887 889999999999988764 67788888888886 7899999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhc
Q 038112 336 LREKNCNADSTTHGVLINGLCK----NGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQA 411 (625)
Q Consensus 336 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (625)
..+.+ +...+..+...+.. .+++++|...+++ ....+ ++..+..+...|...
T Consensus 249 a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~------------------a~~~~---~~~a~~~Lg~~y~~~ 304 (490)
T 2xm6_A 249 SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRK------------------SAEQG---NSDGQYYLAHLYDKG 304 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH------------------HHTTT---CHHHHHHHHHHHHHC
T ss_pred HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH------------------HHHcC---CHHHHHHHHHHHHcC
Confidence 88774 55666677777777 7888888888884 33332 455667777888877
Q ss_pred -----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC---CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc---
Q 038112 412 -----SKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVE---RFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQ--- 480 (625)
Q Consensus 412 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 480 (625)
+++++|...|++..+.+ +...+..+...|...| ++++|+.++++..+.+ +...+..+...|..
T Consensus 305 ~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g 378 (490)
T 2xm6_A 305 AEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKG 378 (490)
T ss_dssp BTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred CCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 89999999999998864 5567777777777656 7899999999999863 67788888888888
Q ss_pred -cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHccCC
Q 038112 481 -SKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCS----AGKVEDALQLYSNMKKRNCV-P-NLVTYNTLMDGLFKTGD 553 (625)
Q Consensus 481 -~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~ 553 (625)
.+++++|...|++..+.+ +...+..+..+|.. .+++++|..+|++..+.+.. | +......++..+.. +
T Consensus 379 ~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~ 453 (490)
T 2xm6_A 379 VKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--Q 453 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--H
T ss_pred CCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--H
Confidence 899999999999999865 57788889999988 89999999999999987532 2 44455555444332 3
Q ss_pred hhHHHHHHHHHHH
Q 038112 554 CDKALEIWNHILE 566 (625)
Q Consensus 554 ~~~A~~~~~~~~~ 566 (625)
.+.+.+...+..+
T Consensus 454 ~~~a~~~a~~~~~ 466 (490)
T 2xm6_A 454 LQQAELLSQQYIE 466 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=1.3e-20 Score=177.57 Aligned_cols=288 Identities=8% Similarity=-0.044 Sum_probs=174.6
Q ss_pred CCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhc
Q 038112 34 YAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRK 113 (625)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 113 (625)
.+.++..+..++..+...|++++|.++++.+++..| .+...+..++.++...|++++|...++++.+..|.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------- 88 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-------- 88 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--------
Confidence 366677778888888888888888888888888764 45667777777777888888888888877554433
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-ChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHH
Q 038112 114 RQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSG-DLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEI 192 (625)
Q Consensus 114 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 192 (625)
+...+..+...+...| ++++|...|+++.+.. +.+...|..++.++...|++++|+..
T Consensus 89 --------------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 147 (330)
T 3hym_B 89 --------------------NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAA 147 (330)
T ss_dssp --------------------STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHH
Confidence 3444555555555555 5666666666655543 22445555566666666666666666
Q ss_pred HHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 038112 193 WERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESG- 271 (625)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 271 (625)
++++.+.. +.+...+..+...+...|++++|...+++..+..+ .+...+..++..+...|++++|...++++.+..
T Consensus 148 ~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 148 YFTAAQLM--KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp HHHHHHHT--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhc--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence 66655542 23344455555666666666666666666555432 344555556666666666666666666555421
Q ss_pred -------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 038112 272 -------IFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNAD 344 (625)
Q Consensus 272 -------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 344 (625)
.+....++..++.++...|++++|.+.++.+....+.+..++..+..++...|++++|...++++.+..+. +
T Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~ 303 (330)
T 3hym_B 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-D 303 (330)
T ss_dssp TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-C
T ss_pred hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-c
Confidence 02234555666666666666666666666666665556666666666666666666666666666554322 4
Q ss_pred hhhHHHHHHHH
Q 038112 345 STTHGVLINGL 355 (625)
Q Consensus 345 ~~~~~~l~~~~ 355 (625)
...+..+..++
T Consensus 304 ~~~~~~l~~~~ 314 (330)
T 3hym_B 304 TFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 44444555544
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=2.5e-20 Score=175.62 Aligned_cols=286 Identities=10% Similarity=-0.052 Sum_probs=239.7
Q ss_pred CCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 038112 70 YCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSG 149 (625)
Q Consensus 70 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 149 (625)
+.+..++..++..+...|++++|..+|+++... + +.+...+..++..+...|
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---------------------------~-p~~~~~~~~~~~~~~~~~ 70 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK---------------------------D-PFHASCLPVHIGTLVELN 70 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------------C-TTCTTTHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------------------------C-CCChhhHHHHHHHHHHhh
Confidence 346667777787777788888888888777442 2 345556677778889999
Q ss_pred ChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHH
Q 038112 150 DLLGALAVFDEMFERGVETNVVCYNILIDGFFKKG-DYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEM 228 (625)
Q Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 228 (625)
++++|...++++.+.. +.+...+..++..+...| ++++|.+.|+++.+.. +.+...|..++.++...|++++|+..
T Consensus 71 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 147 (330)
T 3hym_B 71 KANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAA 147 (330)
T ss_dssp CHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHH
Confidence 9999999999999874 347888999999999999 9999999999998864 55677899999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Q 038112 229 WDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKG-- 306 (625)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 306 (625)
++++.+..+ .+...+..+...+...|++++|...++++.+..+ .+...+..++..+...|++++|...++.+....
T Consensus 148 ~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 225 (330)
T 3hym_B 148 YFTAAQLMK-GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225 (330)
T ss_dssp HHHHHHHTT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh
Confidence 999988754 3567788899999999999999999999998754 378899999999999999999999999988754
Q ss_pred -------CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch
Q 038112 307 -------CLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRL 379 (625)
Q Consensus 307 -------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 379 (625)
+....++..++.++...|++++|...++++.+..+. +...+..+...+...|++++|...++++....+...
T Consensus 226 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 304 (330)
T 3hym_B 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT 304 (330)
T ss_dssp TSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred ccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence 346789999999999999999999999999988544 677888999999999999999999999988877665
Q ss_pred HHHHHHHHHH
Q 038112 380 ADAASLVNRM 389 (625)
Q Consensus 380 ~~a~~~~~~~ 389 (625)
.....+-..+
T Consensus 305 ~~~~~l~~~~ 314 (330)
T 3hym_B 305 FSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5444443333
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=1.9e-18 Score=173.42 Aligned_cols=431 Identities=12% Similarity=0.029 Sum_probs=246.8
Q ss_pred HHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhC
Q 038112 25 FDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFG 104 (625)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 104 (625)
|+.+++.+ |.+..+|..++.. .+.|++++|..+|+++++.. |.+...|..++..+.+.|++++|+.+|+++....
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~- 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV- 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Confidence 45556656 8888888888874 67889999999999998875 5578888888888888888888888888875433
Q ss_pred CCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-HhcCChhhHHH----HHHHHHhC-CCCC-CchhhHHHH
Q 038112 105 CEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGL-VKSGDLLGALA----VFDEMFER-GVET-NVVCYNILI 177 (625)
Q Consensus 105 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~ 177 (625)
|+...|..++... ...|+.+.|.+ +|++++.. |..| +...|...+
T Consensus 77 ----------------------------p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~ 128 (530)
T 2ooe_A 77 ----------------------------LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYI 128 (530)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred ----------------------------CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 3444444444322 23344444433 44444332 2222 233444444
Q ss_pred HHHHh---------cCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHH
Q 038112 178 DGFFK---------KGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFI 248 (625)
Q Consensus 178 ~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 248 (625)
..... .|++++|+.+|++.++.+ ..+....|..........|. ..+..++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P-~~~~~~~~~~~~~~e~~~~~-~~~~~~l~------------------ 188 (530)
T 2ooe_A 129 NFLKGVEAVGSYAENQRITAVRRVYQRGCVNP-MINIEQLWRDYNKYEEGINI-HLAKKMIE------------------ 188 (530)
T ss_dssp HHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC-CTTHHHHHHHHHHHHHHHCH-HHHHHHHH------------------
T ss_pred HHHhcCCCcccHHHHhHHHHHHHHHHHHHhch-hhhHHHHHHHHHHHHHhhch-hHHHHHHH------------------
Confidence 43332 456666666666665521 11101122221111000000 00000000
Q ss_pred HHHHhcCCHHHHHHHHHHH------HHCC---CCcC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHH
Q 038112 249 HGLCKAGNVEGAERVYREM------VESG---IFVD--------AVTYNAMIDGFCRA----GKI----KECFELWEVMG 303 (625)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~------~~~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~ 303 (625)
...+++..|..++..+ .+.. ++|+ ...|...+...... ++. +.+..+|+++.
T Consensus 189 ---~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al 265 (530)
T 2ooe_A 189 ---DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCL 265 (530)
T ss_dssp ---TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHH
T ss_pred ---HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHH
Confidence 0112233333333331 1110 1222 12333333222111 122 35666777777
Q ss_pred hcCCCcHHHHHHHHHHHHh-------CCCHH-------HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038112 304 RKGCLNVVSYNILIRGLLE-------NGKVD-------EAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILN 369 (625)
Q Consensus 304 ~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 369 (625)
...|.++..|..++..+.. .|+++ +|..++++....-.+.+...+..++..+...|++++|..+++
T Consensus 266 ~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~ 345 (530)
T 2ooe_A 266 LVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYN 345 (530)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 6666677777777776664 56665 677777777652122245666666777777777777777777
Q ss_pred HHHhcCCCchHHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HhccC
Q 038112 370 EVEEGGEGRLADAASLVNRMDKHGCKLN-AYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLING-LCKVE 447 (625)
Q Consensus 370 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 447 (625)
++. .... .+ ..+|...+..+.+.|+++.|+.+|++..+... .+...|...+.. +...|
T Consensus 346 ~al------------------~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 346 RLL------------------AIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHH------------------HSSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTC
T ss_pred HHh------------------Cccc-cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcC
Confidence 432 2211 12 24677777777777888888888888776522 123333322222 33578
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHcCCCHHHHHH
Q 038112 448 RFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGF-TP--DVTMYNILIHGLCSAGKVEDALQ 524 (625)
Q Consensus 448 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~ 524 (625)
++++|..+|++.++.. +.+...+..++..+.+.|+.++|..+|++.+..+. .| ....|...+......|+.+.+..
T Consensus 406 ~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~ 484 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 484 (530)
T ss_dssp CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred ChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888877752 33567777888888888888888888888887532 22 24477777777778888888888
Q ss_pred HHHHHHhC
Q 038112 525 LYSNMKKR 532 (625)
Q Consensus 525 ~~~~~~~~ 532 (625)
++.++.+.
T Consensus 485 ~~~r~~~~ 492 (530)
T 2ooe_A 485 VEKRRFTA 492 (530)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888774
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=2.8e-18 Score=172.23 Aligned_cols=414 Identities=12% Similarity=0.072 Sum_probs=241.3
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 038112 124 NSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVY 203 (625)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 203 (625)
++.+..+ |.+...|..++. +.+.|+++.|..+|+++.+. .|.+...|..++..+.+.|++++|..+|++++...
T Consensus 3 e~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--- 76 (530)
T 2ooe_A 3 EKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--- 76 (530)
T ss_dssp HHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---
T ss_pred hhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---
Confidence 3444443 456667777776 35677777777777777766 34466677777777777777777777777777642
Q ss_pred CCcchHHHHHHHH-HhcCChhhHHH----HHHHHHhC-CCC-CChhhHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 038112 204 PNVVTYNVMINGL-CKCGRFDECLE----MWDRMKKN-ERE-KDSFTYCSFIHGLCK---------AGNVEGAERVYREM 267 (625)
Q Consensus 204 ~~~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 267 (625)
|+...|...+... ...|+.+.|.+ +|++.... |.. ++...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 4555666655422 34566666554 55554432 322 234555555555443 56777777777777
Q ss_pred HHCCCCcCHHHHHHHHHHH-------------HhcCCHHHHHHHHHHH------Hhc----CCCc--------HHHHHHH
Q 038112 268 VESGIFVDAVTYNAMIDGF-------------CRAGKIKECFELWEVM------GRK----GCLN--------VVSYNIL 316 (625)
Q Consensus 268 ~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~------~~~----~~~~--------~~~~~~l 316 (625)
++.........|....... ...+++..|..++... ... -++. ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 7631111122332222211 1234566777666652 221 1221 2456555
Q ss_pred HHHHHhC----CCH----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhc
Q 038112 317 IRGLLEN----GKV----DEAISIWELLREKNCNADSTTHGVLINGLCK-------NGYLN-------KAIQILNEVEEG 374 (625)
Q Consensus 317 ~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~ 374 (625)
+...... ++. +.+..+|++.+...+ .+...|...+..+.. .|+++ +|..+++
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~----- 310 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE----- 310 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH-----
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH-----
Confidence 5443332 232 467788888888743 367777777777664 67776 5666665
Q ss_pred CCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-h-hhHHHHHHHHhccCCHHHH
Q 038112 375 GEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPT-V-VSYNTLINGLCKVERFGEA 452 (625)
Q Consensus 375 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a 452 (625)
.....-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|
T Consensus 311 -------------~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A 375 (530)
T 2ooe_A 311 -------------RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSG 375 (530)
T ss_dssp -------------HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHH
Confidence 3433222345677777777777788888888888887775 332 2 3666666666677777777
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHH-HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 038112 453 YSFVKEMLEKGWKPDMITYSLLING-LCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKK 531 (625)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 531 (625)
..+|++..+.. +.+...+...+.. +...|++++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|+++..
T Consensus 376 ~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 376 RMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 77777777641 1122222221111 224666777777777666542 23456666666666666777777777776666
Q ss_pred CC-CCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 532 RN-CVPN--LVTYNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 532 ~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
.+ ..|+ ...|...+......|+.+.+..+++++.+
T Consensus 454 ~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 454 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 42 1221 33565666666666676666666666665
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=4.8e-20 Score=176.58 Aligned_cols=289 Identities=10% Similarity=-0.023 Sum_probs=142.2
Q ss_pred HccCChhHHHH-HHHhhccCCCCCC--CHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCc
Q 038112 13 KAEKNPHTALA-LFDSATREPGYAH--SPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMP 89 (625)
Q Consensus 13 ~~~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (625)
...|+++.|+. .|+.++......+ +...+..++..+...|++++|...|+.+++.. |.+..++..++.++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34566777776 6776665441111 23456667777777777777777777777665 34666666777777777777
Q ss_pred hHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 038112 90 DKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169 (625)
Q Consensus 90 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 169 (625)
++|+..|+++... + +.+..++..+...+...|++++|+..++++.+..+. +
T Consensus 115 ~~A~~~~~~al~~---------------------------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~ 165 (368)
T 1fch_A 115 LLAISALRRCLEL---------------------------K-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-Y 165 (368)
T ss_dssp HHHHHHHHHHHHH---------------------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-T
T ss_pred HHHHHHHHHHHhc---------------------------C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-c
Confidence 7766666665332 1 335566677777777777777777777777765322 2
Q ss_pred chhhHHH---------------HHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112 170 VVCYNIL---------------IDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKK 234 (625)
Q Consensus 170 ~~~~~~l---------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (625)
...+..+ +..+...|++++|+..++++.+..+..++..++..++.++...|++++|+..++++..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2222111 1112244455555555554444321111233444444444455555555555544443
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-----
Q 038112 235 NEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLN----- 309 (625)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----- 309 (625)
..+ .+..++..++..+...|++++|+..|+++++..+ .+..++..++.+|.+.|++++|...|+.+....|.+
T Consensus 246 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 323 (368)
T 1fch_A 246 VRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG 323 (368)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred hCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccc
Confidence 321 2334444444444444444444444444444321 134444444444444444444444444444333222
Q ss_pred ------HHHHHHHHHHHHhCCCHHHHHHHH
Q 038112 310 ------VVSYNILIRGLLENGKVDEAISIW 333 (625)
Q Consensus 310 ------~~~~~~l~~~~~~~~~~~~a~~~~ 333 (625)
..+|..+..++...|++++|..++
T Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 324 EGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred cccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 344444444444444444444443
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=2.1e-19 Score=172.11 Aligned_cols=299 Identities=9% Similarity=-0.012 Sum_probs=209.4
Q ss_pred hcCChHHHHH-HHHHHHHCCC---CCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChh
Q 038112 112 RKRQFEKAKR-FLNSLWEKGL---KPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYM 187 (625)
Q Consensus 112 ~~~~~~~A~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 187 (625)
-.|++++|.. .|++...... ..+...+..+...+.+.|++++|+..|+++.+.. +.+..++..++.++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3455556655 5554443321 1134556677777788888888888888887764 336667777888888888888
Q ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHH---------------HHHHHH
Q 038112 188 RAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCS---------------FIHGLC 252 (625)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~ 252 (625)
+|+..|+++.+.. +.+..++..++.++...|++++|+..++++....+. +...+.. .+..+.
T Consensus 116 ~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 116 LAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 8888888877753 446667777788888888888888888887766532 2222211 133334
Q ss_pred hcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHH
Q 038112 253 KAGNVEGAERVYREMVESGIFV-DAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAIS 331 (625)
Q Consensus 253 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 331 (625)
..|++++|...++++++..+.. +..++..++.++...|++++|+..++.+....|.+..++..++.++...|++++|+.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8899999999999998864332 578888999999999999999999999999888899999999999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhc
Q 038112 332 IWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQA 411 (625)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (625)
.++++....+ .+...+..+...+...|++++|...++++....+.... ......+....+|..+..++...
T Consensus 273 ~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~ 343 (368)
T 1fch_A 273 AYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG--------PRGEGGAMSENIWSTLRLALSML 343 (368)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--------------CCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC--------ccccccchhhHHHHHHHHHHHHh
Confidence 9999988753 36778888999999999999999999865431100000 00000112256777788888888
Q ss_pred CCHHHHHHHHHH
Q 038112 412 SKLENAIFLFKE 423 (625)
Q Consensus 412 ~~~~~a~~~~~~ 423 (625)
|+++.|..++.+
T Consensus 344 g~~~~A~~~~~~ 355 (368)
T 1fch_A 344 GQSDAYGAADAR 355 (368)
T ss_dssp TCGGGHHHHHTT
T ss_pred CChHhHHHhHHH
Confidence 888887777653
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=1.8e-19 Score=172.25 Aligned_cols=236 Identities=8% Similarity=-0.034 Sum_probs=133.4
Q ss_pred CHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCCh
Q 038112 37 SPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQF 116 (625)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 116 (625)
+...+..++..+.+.|++++|...|+.+++..| .+..++..++.++...|++++|+..|+++.+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------- 128 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLEL-------------- 128 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------
Confidence 344577777777777888888888888877753 46777777777777777777777777776432
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchh----------hHHHHHHHHhcCCh
Q 038112 117 EKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVC----------YNILIDGFFKKGDY 186 (625)
Q Consensus 117 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~g~~ 186 (625)
+ +.+..++..+...+...|++++|+..|+++.+..+. +... +..++.++...|++
T Consensus 129 -------------~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 193 (365)
T 4eqf_A 129 -------------Q-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVL 193 (365)
T ss_dssp -------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHH
T ss_pred -------------C-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhH
Confidence 1 334666777777777777777777777777765321 1111 22235555555666
Q ss_pred hHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038112 187 MRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYRE 266 (625)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 266 (625)
++|++.++++.+..+...+..++..++..+...|++++|+..|+++.+..+ .+..++..++..+...|++++|+..|++
T Consensus 194 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 194 EGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp HHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666665555431111344555555555555555555555555554432 2344555555555555555555555555
Q ss_pred HHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038112 267 MVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGR 304 (625)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (625)
+++..+. +..++..+..+|...|++++|...|+.+..
T Consensus 273 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 273 ALEIQPG-FIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHhcCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5544221 344455555555555555555555555443
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=7.8e-18 Score=167.05 Aligned_cols=352 Identities=11% Similarity=-0.061 Sum_probs=257.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHhhccC-------CCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcC-------C
Q 038112 5 AKRLLNLLKAEKNPHTALALFDSATRE-------PGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKC-------Y 70 (625)
Q Consensus 5 ~~~l~~~l~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~ 70 (625)
.+.|+.++..+|++++|+..|+.+++. ...|....+|..++.+|...|++++|...++++++... +
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~ 133 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI 133 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccch
Confidence 367899999999999999999988653 12366678889999999999999999999999987421 1
Q ss_pred CCHHHHHHHHHHHHc--cCCchHHHHHHHHhHHhhCCCcch----------hhhcCChHHHHHHHHHHHHCCCCCCHhHH
Q 038112 71 CPEDVALSVIQAYGK--NSMPDKALDVFQRMNEIFGCEAGI----------LCRKRQFEKAKRFLNSLWEKGLKPDVYSY 138 (625)
Q Consensus 71 ~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~----------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 138 (625)
....++...+.++.. .+++++|+..|+++....|..+.+ +...++.++|+..|+++++.+ +.+..++
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~ 212 (472)
T 4g1t_A 134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLK 212 (472)
T ss_dssp CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHH
T ss_pred hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHH
Confidence 245667666665554 457999999999999999888776 234577889999999998876 5566777
Q ss_pred HHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHH
Q 038112 139 GTVINGLVK----SGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMIN 214 (625)
Q Consensus 139 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 214 (625)
..+...+.. .+++++|...+++..... +.+..++..++..+...|++++|+..++++.+.. |.+..++..+..
T Consensus 213 ~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~ 289 (472)
T 4g1t_A 213 VLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGC 289 (472)
T ss_dssp HHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHHHHH
Confidence 666655554 467889999999998874 3477889999999999999999999999998863 445566777766
Q ss_pred HHHhc-------------------CChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 038112 215 GLCKC-------------------GRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVD 275 (625)
Q Consensus 215 ~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 275 (625)
+|... +.++.|...+++.....+ .+..++..+...+...|++++|+..|++.++..+.+.
T Consensus 290 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~ 368 (472)
T 4g1t_A 290 CYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368 (472)
T ss_dssp HHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh
Confidence 65432 335678888888776654 4677888999999999999999999999998754433
Q ss_pred HH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038112 276 AV--TYNAMID-GFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLI 352 (625)
Q Consensus 276 ~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 352 (625)
.. .+..+.. .....|++++|+..|++.....+.+...... ...+..+++.....++. +..++..+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~----------~~~l~~~~~~~l~~~p~-~~~~~~~LG 437 (472)
T 4g1t_A 369 AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM----------KDKLQKIAKMRLSKNGA-DSEALHVLA 437 (472)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH----------HHHHHHHHHHHHHHCC--CTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 21 2233332 2457799999999999999887765433221 23445566666666433 778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 038112 353 NGLCKNGYLNKAIQILNEVE 372 (625)
Q Consensus 353 ~~~~~~~~~~~a~~~~~~~~ 372 (625)
.+|...|++++|++.+++..
T Consensus 438 ~~~~~~g~~~~A~~~y~kAL 457 (472)
T 4g1t_A 438 FLQELNEKMQQADEDSERGL 457 (472)
T ss_dssp HHHHHHHHCC----------
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999644
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=3.9e-17 Score=162.05 Aligned_cols=384 Identities=15% Similarity=-0.008 Sum_probs=221.9
Q ss_pred CchhhHHHHHHHHhcCChhHHHHHHHHHHhC----C---CCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhC-----C
Q 038112 169 NVVCYNILIDGFFKKGDYMRAKEIWERLVME----T---SVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKN-----E 236 (625)
Q Consensus 169 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~ 236 (625)
....|+.++..+...|++++|++.|++..+. . ..+....+|+.+..+|...|++++|...+++.... +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456777777788888888888888776542 0 01223346777777777888888887777766531 1
Q ss_pred C--CCChhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhcCCCc
Q 038112 237 R--EKDSFTYCSFIHGLCK--AGNVEGAERVYREMVESGIFVDAVTYNAMIDGF---CRAGKIKECFELWEVMGRKGCLN 309 (625)
Q Consensus 237 ~--~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~ 309 (625)
. .....++..+..++.. .+++++|+..|++.++..+. ++..+..+..++ ...++.++|++.+++.....|.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 0 1123445544444443 34577777777777765432 444554444443 34466677777777777777777
Q ss_pred HHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHH
Q 038112 310 VVSYNILIRGLLE----NGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASL 385 (625)
Q Consensus 310 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~ 385 (625)
..++..+...+.. .+++++|.+.+++.....+. +...+..+...+...|++++|...++++
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~a-------------- 273 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKA-------------- 273 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHH--------------
Confidence 7766666655544 34566777777777666433 5556666777777777777777777632
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 038112 386 VNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWK 465 (625)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 465 (625)
.... +.+..++..+..+|...+.... ... ... ........+.++.|...+++..+.. +
T Consensus 274 ----l~~~-p~~~~~~~~lg~~y~~~~~~~~---------~~~-~~~------~~~~~~~~~~~~~A~~~~~~a~~~~-~ 331 (472)
T 4g1t_A 274 ----LEYI-PNNAYLHCQIGCCYRAKVFQVM---------NLR-ENG------MYGKRKLLELIGHAVAHLKKADEAN-D 331 (472)
T ss_dssp ----HHHS-TTCHHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred ----HHhC-CChHHHHHHHHHHHHHHHHHhh---------hHH-HHH------HHHHHHHHhhHHHHHHHHHHHhhcC-C
Confidence 2221 2244555555554432111000 000 000 0000111234567888888877752 3
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH-HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 038112 466 PDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDV--TMYNILIH-GLCSAGKVEDALQLYSNMKKRNCVPNLVTYN 542 (625)
Q Consensus 466 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 542 (625)
.+...+..+...+...|++++|...|++.++....+.. ..+..++. .+...|++++|+..|++..+. .|+.....
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~ 409 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE 409 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH
Confidence 45567788888899999999999999998886433322 12333333 234778999999999998884 45533222
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCC
Q 038112 543 TLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALCRG 603 (625)
Q Consensus 543 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (625)
. ....+.+++++.++ ..| +..++..++.+|...|++++|++.|++.++.+
T Consensus 410 ~---------~~~~l~~~~~~~l~--~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 410 K---------MKDKLQKIAKMRLS--KNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp H---------HHHHHHHHHHHHHH--HCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred H---------HHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2 22345566666666 445 66888999999999999999999999998753
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=3.2e-19 Score=170.46 Aligned_cols=265 Identities=12% Similarity=-0.032 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038112 277 VTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLC 356 (625)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 356 (625)
..+..++..+.+.|++++|+..|+.+....|.+..++..++.++...|++++|+..|+++....+. +...+..+...+.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 335555566666666666666666666655556666666666666666666666666655554322 3444444444444
Q ss_pred hcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------
Q 038112 357 KNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCS------ 430 (625)
Q Consensus 357 ~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------ 430 (625)
..|++++|...|+++.+..+.
T Consensus 145 -----------------------------------------------------~~g~~~~A~~~~~~al~~~p~~~~~~~ 171 (365)
T 4eqf_A 145 -----------------------------------------------------NTSHQQDACEALKNWIKQNPKYKYLVK 171 (365)
T ss_dssp -----------------------------------------------------HTTCHHHHHHHHHHHHHHCHHHHCC--
T ss_pred -----------------------------------------------------ccccHHHHHHHHHHHHHhCccchHHHh
Confidence 444455554444444432110
Q ss_pred ---CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038112 431 ---PTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWK-PDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMY 506 (625)
Q Consensus 431 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 506 (625)
.....+..+...+...|++++|..+++++.+.... ++..++..++..+...|++++|...++++++.. +.+..++
T Consensus 172 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 250 (365)
T 4eqf_A 172 NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLW 250 (365)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 11223445577788899999999999998886321 157788899999999999999999999998864 4568899
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-------------H
Q 038112 507 NILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD-------------I 573 (625)
Q Consensus 507 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------------~ 573 (625)
..++.+|...|++++|...|+++.+. .+.+..++..++.+|...|++++|...|+++++ +.|+ .
T Consensus 251 ~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~ 327 (365)
T 4eqf_A 251 NRLGATLANGDRSEEAVEAYTRALEI-QPGFIRSRYNLGISCINLGAYREAVSNFLTALS--LQRKSRNQQQVPHPAISG 327 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH--HHHCC------------C
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccCCCcccchhhhHH
Confidence 99999999999999999999999986 244688999999999999999999999999988 3332 5
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHH
Q 038112 574 ISYNITLKGLCSCSRMSDAFEFLNDA 599 (625)
Q Consensus 574 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 599 (625)
.+|..+..++...|+.+.+.+..++-
T Consensus 328 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 328 NIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 77889999999999999888877653
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=2.3e-17 Score=152.79 Aligned_cols=246 Identities=13% Similarity=0.128 Sum_probs=97.1
Q ss_pred HHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC
Q 038112 8 LLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS 87 (625)
Q Consensus 8 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (625)
+..++...|++++|..+++.. +.+.+|..++.++.+.|++++|++.|.+. ++...+..++..+...|
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCC
Confidence 445556677888888888874 22458888888888888888888888542 25567777777777777
Q ss_pred CchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 038112 88 MPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVE 167 (625)
Q Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 167 (625)
++++|+.+++... +. .+++.+...++.+|.+.|++.++.++++ .
T Consensus 76 ~~EeAi~yl~~ar---------------------------k~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~ 119 (449)
T 1b89_A 76 NWEELVKYLQMAR---------------------------KK--ARESYVETELIFALAKTNRLAELEEFIN-------G 119 (449)
T ss_dssp --------------------------------------------------------------CHHHHTTTTT-------C
T ss_pred CHHHHHHHHHHHH---------------------------Hh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------C
Confidence 7777777666552 21 2346667778888888888888777764 2
Q ss_pred CCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHH
Q 038112 168 TNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSF 247 (625)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 247 (625)
|+..+|..++..|...|.+++|...|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..+
T Consensus 120 pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v 183 (449)
T 1b89_A 120 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 183 (449)
T ss_dssp C----------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHH
Confidence 56678888888888888888888888864 36888888888888888888888877 267788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhC
Q 038112 248 IHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLEN 323 (625)
Q Consensus 248 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (625)
+.+|...|+++.|......+ ...+.-...++..|.+.|.+++|+.+++......+.....|+.+...|++-
T Consensus 184 ~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 184 CFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 88888888888886554432 224444556777888888888888888888777766777777777777654
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=1.2e-18 Score=163.79 Aligned_cols=275 Identities=8% Similarity=-0.061 Sum_probs=182.2
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK 85 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (625)
-.++..+...|++++|+..|+.+++.. |.++.++..++.++...|++++|.+.++++++.. |.+..++..++.++..
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 467788889999999999999988877 7888999999999999999999999999999886 4477888889999999
Q ss_pred cCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHH-HH-HHHhcCChhhHHHHHHHHHh
Q 038112 86 NSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTV-IN-GLVKSGDLLGALAVFDEMFE 163 (625)
Q Consensus 86 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~a~~~~~~~~~ 163 (625)
.|++++|...++++....|.....+..... ..|+......+ .. .+...|++++|...++++.+
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 166 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQ---------------ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE 166 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC-----------------------------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhH---------------HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh
Confidence 999999999999887765554433211100 00111111111 11 24455666666666666665
Q ss_pred CCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhh
Q 038112 164 RGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFT 243 (625)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 243 (625)
..+ .+..++..++.++...|++++|...++.+.+.. +.+..++..++.++...|++++|...++++.+..+ .+..+
T Consensus 167 ~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~ 242 (327)
T 3cv0_A 167 MNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRV 242 (327)
T ss_dssp HST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred hCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHH
Confidence 532 255566666666666666666666666666542 33455666666666677777777777766665442 34556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038112 244 YCSFIHGLCKAGNVEGAERVYREMVESGIFV-----------DAVTYNAMIDGFCRAGKIKECFELWEVM 302 (625)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 302 (625)
+..+...+...|++++|...++++.+..+.. +...+..+..++...|++++|..+++..
T Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 243 MYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6666677777777777777777666543221 3556666777777777777777766543
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=1.2e-17 Score=156.93 Aligned_cols=265 Identities=9% Similarity=-0.054 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChh
Q 038112 73 EDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLL 152 (625)
Q Consensus 73 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 152 (625)
...+...+..+...|++++|...|+++.+ .. +.+...+..+...+...|+++
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---------------------------~~-~~~~~~~~~l~~~~~~~~~~~ 72 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQ---------------------------AA-PEREEAWRSLGLTQAENEKDG 72 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------------HC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHH---------------------------hC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34556667777777777777777776643 22 346677788888888889999
Q ss_pred hHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHH--------------HH-HHH
Q 038112 153 GALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVM--------------IN-GLC 217 (625)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~ 217 (625)
+|...++++.+.. +.+..++..++.++...|++++|.+.++.+.+.. +.+...+..+ .. .+.
T Consensus 73 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (327)
T 3cv0_A 73 LAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFA 149 (327)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTT
T ss_pred HHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHH
Confidence 9999888888874 3367788888888888899999999888888763 3333334333 33 477
Q ss_pred hcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 038112 218 KCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFE 297 (625)
Q Consensus 218 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 297 (625)
..|++++|...++++.+..+ .+...+..++..+...|++++|...++++.+..+ .+..++..++.++...|++++|.+
T Consensus 150 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 227 (327)
T 3cv0_A 150 APNEYRECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALD 227 (327)
T ss_dssp SHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 88999999999999987654 4778899999999999999999999999988743 367889999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHHhcCCHHHHHH
Q 038112 298 LWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNA-----------DSTTHGVLINGLCKNGYLNKAIQ 366 (625)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~ 366 (625)
.++.+....|.+..++..++.++...|++++|...++++....+.. +...+..+..++...|+++.|..
T Consensus 228 ~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 307 (327)
T 3cv0_A 228 AYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL 307 (327)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence 9999999988899999999999999999999999999998875432 46678888999999999999998
Q ss_pred HHHH
Q 038112 367 ILNE 370 (625)
Q Consensus 367 ~~~~ 370 (625)
++++
T Consensus 308 ~~~~ 311 (327)
T 3cv0_A 308 TYAQ 311 (327)
T ss_dssp HTTC
T ss_pred HHHH
Confidence 8863
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=6.1e-18 Score=154.21 Aligned_cols=198 Identities=14% Similarity=0.104 Sum_probs=119.2
Q ss_pred CCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHH
Q 038112 133 PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGV-ETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNV 211 (625)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 211 (625)
|+..++..+...+...++.++|++.++++...+. |.++..+..++..+...|++++|++.+++ +.+...+..
T Consensus 63 ~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~ 135 (291)
T 3mkr_A 63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAM 135 (291)
T ss_dssp HHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHH
Confidence 3444555555555556666666666666655442 22344455555666666666666666554 234555666
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 038112 212 MINGLCKCGRFDECLEMWDRMKKNEREKDSFTY---CSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR 288 (625)
Q Consensus 212 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (625)
++.++.+.|++++|.+.|+++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.++.++.+
T Consensus 136 l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~ 212 (291)
T 3mkr_A 136 TVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMA 212 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 6666666666666666666665543 222111 112223334467777777777777653 3366677777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHcC
Q 038112 289 AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDE-AISIWELLREKN 340 (625)
Q Consensus 289 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~ 340 (625)
.|++++|.+.|+++....|.++.++..++..+...|+.++ +.++++++.+..
T Consensus 213 ~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 213 QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 7777777777777777777777777777777777777654 456777776663
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=4.9e-18 Score=157.20 Aligned_cols=282 Identities=12% Similarity=0.108 Sum_probs=85.6
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHH
Q 038112 147 KSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECL 226 (625)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 226 (625)
+.|+.++|.+.++++. ++.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 3444555555555541 2235555555555555555555555331 34445555555555555555555
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038112 227 EMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKG 306 (625)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 306 (625)
..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 555444432 2334445555555555555555555443 134445555566666666666666665544
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHH
Q 038112 307 CLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLV 386 (625)
Q Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~ 386 (625)
..|..++.++.+.|++++|++.++++ .++.+|..++.+|...|+++.|.....
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l----------------- 201 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL----------------- 201 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTT-----------------
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHH-----------------
Confidence 24555666666666666666665555 145556666666666666666533221
Q ss_pred HHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcc--CCHHHHHHHHHHHHHCCC
Q 038112 387 NRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKV--ERFGEAYSFVKEMLEKGW 464 (625)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~ 464 (625)
.+...+.-...++..|.+.|.+++|..+++...... +.....|..+..+|++- ++..+.++.|..-+ ++
T Consensus 202 ------~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni 272 (449)
T 1b89_A 202 ------HIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NI 272 (449)
T ss_dssp ------TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CH
T ss_pred ------HHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cC
Confidence 011222223345556666666666666666655443 22344555554444432 23333333332111 11
Q ss_pred CC------CHhhHHHHHHHHhccCCHHHHHHH
Q 038112 465 KP------DMITYSLLINGLCQSKKIDMALKL 490 (625)
Q Consensus 465 ~~------~~~~~~~l~~~~~~~~~~~~A~~~ 490 (625)
+| +...|..++..|.+.++++.|...
T Consensus 273 ~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 273 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 11 234555666666666666666543
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=7.5e-17 Score=147.01 Aligned_cols=164 Identities=12% Similarity=0.066 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhH---HHHH
Q 038112 399 YTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITY---SLLI 475 (625)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~ 475 (625)
..+..+...+...|++++|.+.+++ +.+...+..++..+.+.|++++|...++++.+. .|+.... ..++
T Consensus 102 ~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~ 173 (291)
T 3mkr_A 102 TFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWV 173 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHH
Confidence 3344444445555555555555544 234445555555566666666666666665553 2332111 1122
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChh
Q 038112 476 NGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCD 555 (625)
Q Consensus 476 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 555 (625)
..+...|++++|..+|+++.+.. +.+...++.++.++...|++++|...++++.+.. +.++.++..++.++...|+.+
T Consensus 174 ~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~ 251 (291)
T 3mkr_A 174 SLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPP 251 (291)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCH
T ss_pred HHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCH
Confidence 22334466777777777776652 4466677777777777777777777777776642 445667777777777777765
Q ss_pred H-HHHHHHHHHHcCCCCCHH
Q 038112 556 K-ALEIWNHILEERLRPDII 574 (625)
Q Consensus 556 ~-A~~~~~~~~~~~~~p~~~ 574 (625)
+ +.++++++++ +.|+..
T Consensus 252 eaa~~~~~~~~~--~~P~~~ 269 (291)
T 3mkr_A 252 EVTNRYLSQLKD--AHRSHP 269 (291)
T ss_dssp HHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHH--hCCCCh
Confidence 4 4567777776 566543
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.77 E-value=2.8e-16 Score=153.20 Aligned_cols=256 Identities=10% Similarity=-0.013 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCchHHHHHHH
Q 038112 310 VVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNG---YLNKAIQILNEVEEGGEGRLADAASLV 386 (625)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~a~~~~ 386 (625)
+.++..+...|...+.++++......+.+.-...++..+..+...|...| ++++|...++
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~----------------- 203 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQME----------------- 203 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHH-----------------
Confidence 44444555555555433333322222221111113335555555666666 5555655555
Q ss_pred HHHhhCCCCccHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-H--hccCCHHHHHHHHHHH
Q 038112 387 NRMDKHGCKLNAYTCNSLMNGFIQA----SKLENAIFLFKEMSRKGCSPTVVSYNTLING-L--CKVERFGEAYSFVKEM 459 (625)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~ 459 (625)
.....+ +++...+..+...|... +++++|...|++.. . .++..+..+... + ...+++++|+.+|++.
T Consensus 204 -~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~A 277 (452)
T 3e4b_A 204 -AGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNG 277 (452)
T ss_dssp -HHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHH
T ss_pred -HHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 233333 22344444555555544 68888888888877 2 355666666665 3 4578889999999988
Q ss_pred HHCCCCCCHhhHHHHHHHHhccC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHH
Q 038112 460 LEKGWKPDMITYSLLINGLCQSK-----KIDMALKLCCQFLQKGFTPDVTMYNILIHGLCS----AGKVEDALQLYSNMK 530 (625)
Q Consensus 460 ~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 530 (625)
.+.| +...+..+...|. .| ++++|...|++.. . .+...+..|..+|.. ..++++|..+|++..
T Consensus 278 a~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 349 (452)
T 3e4b_A 278 RAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAA 349 (452)
T ss_dssp HHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 8765 5666677777666 44 8899999988877 3 366777778877766 348899999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 038112 531 KRNCVPNLVTYNTLMDGLFK----TGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDAL 600 (625)
Q Consensus 531 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (625)
+.| +......|+.+|.. ..++++|..+|+.+.+.|. ++.......+......++..+|.++.++..
T Consensus 350 ~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 350 RNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp TTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 865 45566677877764 4588899999999888652 222222222222233355666777776654
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.76 E-value=2.3e-16 Score=153.87 Aligned_cols=48 Identities=10% Similarity=-0.024 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCC
Q 038112 483 KIDMALKLCCQFLQKGFTPDVTMYNILIHGLCS----AGKVEDALQLYSNMKKRN 533 (625)
Q Consensus 483 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 533 (625)
++++|...|++..+.| +......|..+|.. ..++.+|..+|+...+.|
T Consensus 337 d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 337 YPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp CHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 4455555555544433 12223334444432 234555555555555443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=7.5e-17 Score=145.71 Aligned_cols=221 Identities=14% Similarity=0.036 Sum_probs=160.8
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCC------HHHHHHH
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCP------EDVALSV 79 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l 79 (625)
..++.++...|++++|+..|+.+++.. .++.++..++.++...|++++|.+.++.+++..+... ..++..+
T Consensus 9 ~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 9 KAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 567888889999999999999988765 6678889999999999999999999999988764322 5788889
Q ss_pred HHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHH
Q 038112 80 IQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFD 159 (625)
Q Consensus 80 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 159 (625)
+.++...|++++|...|+++....+. ..++...|++++|...++++.... +.+...+..+...+...|++++|...|+
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 163 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHRT-ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYT 163 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCch-hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999988765443 445667777777777777777654 3445566666666777777777777777
Q ss_pred HHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112 160 EMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKK 234 (625)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (625)
++.+..+ .+..++..++.++...|++++|...++.+.+.. +.+..++..+..++...|++++|...+++..+
T Consensus 164 ~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 164 EMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7766532 255666666666666777777777666666542 33445566666666666666666666666554
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.74 E-value=8.3e-17 Score=140.22 Aligned_cols=204 Identities=14% Similarity=-0.007 Sum_probs=131.2
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK 85 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (625)
..++.++..+|++++|+..|+.+++.+ |.++.++..++.++.+.|++++|+..++++++.+| .+...+..++.++..
T Consensus 9 ~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~ 85 (217)
T 2pl2_A 9 LRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSEAYVA 85 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 456677778888888888888888777 77888888888888888888888888888888763 467777777777766
Q ss_pred cCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 038112 86 NSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERG 165 (625)
Q Consensus 86 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 165 (625)
.+... .......|++++|+..|+++++.+ |.+...+..+..++...|++++|+..|+++.+..
T Consensus 86 ~~~~~----------------~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 86 LYRQA----------------EDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp HHHTC----------------SSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhhh----------------hhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 51000 001112244445555555545543 4456677777777777888888888888877776
Q ss_pred CCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHH
Q 038112 166 VETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMK 233 (625)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 233 (625)
.++..+..++.++...|++++|+..|+++.+.. |.+...+..+..++...|++++|+..|++..
T Consensus 149 --~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 149 --DTPEIRSALAELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC---------------
T ss_pred --cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 467777777777778888888888887777653 4455667777777777777777777776553
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.74 E-value=2.1e-16 Score=137.64 Aligned_cols=201 Identities=15% Similarity=0.081 Sum_probs=149.1
Q ss_pred CCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHH
Q 038112 132 KPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNV 211 (625)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 211 (625)
|++...+..+...+.+.|++++|+..|+++++..+ .++..+..++.++.+.|++++|+..+++..+.. |.+...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHH
Confidence 56677788888888888888888888888887743 367788888888888888888888888888763 455667888
Q ss_pred HHHHHHhc-----------CChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 038112 212 MINGLCKC-----------GRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYN 280 (625)
Q Consensus 212 l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 280 (625)
+..++... |++++|+..+++..+..+ .+...+..+...+...|++++|+..|++.++.. .++..+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 88888888 888888888888877654 356777788888888888888888888888776 5778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 038112 281 AMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLRE 338 (625)
Q Consensus 281 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (625)
.+..++...|++++|+..|+.+....|.+..++..+..++...|++++|+..+++...
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 8888888888888888888888888888888888888888888888888888776543
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.73 E-value=1e-15 Score=144.06 Aligned_cols=253 Identities=9% Similarity=-0.006 Sum_probs=195.4
Q ss_pred CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCC-chHHHHHHHHhHHhhCCCcchhhhc
Q 038112 35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSM-PDKALDVFQRMNEIFGCEAGILCRK 113 (625)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~ 113 (625)
|.++.++..++.++...|++++|++.++++++.+| .+..++..++.++...|+ +++|+..|+++...
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l----------- 161 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----------- 161 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----------
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-----------
Confidence 45567888888889999999999999999999874 488889999999988886 88888888877542
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHH
Q 038112 114 RQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIW 193 (625)
Q Consensus 114 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 193 (625)
+ +.+..+|..+..++...|++++|+..|+++++.++. +...|..+..++...|++++|+..|
T Consensus 162 ----------------~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~ 223 (382)
T 2h6f_A 162 ----------------Q-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYV 223 (382)
T ss_dssp ----------------C-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred ----------------C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHH
Confidence 2 346777888888888888888888888888887543 7778888888888888888888888
Q ss_pred HHHHhCCCCCCCcchHHHHHHHHHh-cCChhhH-----HHHHHHHHhCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHH
Q 038112 194 ERLVMETSVYPNVVTYNVMINGLCK-CGRFDEC-----LEMWDRMKKNEREKDSFTYCSFIHGLCKAG--NVEGAERVYR 265 (625)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~ 265 (625)
+++++.. +.+..+|+.+..++.. .|..++| +..+++.+...+ .+...|..+...+...| ++++|++.+.
T Consensus 224 ~~al~l~--P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~ 300 (382)
T 2h6f_A 224 DQLLKED--VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLL 300 (382)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHH
T ss_pred HHHHHhC--CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHH
Confidence 8888863 5567788888888888 5555777 477777776654 36667777777777777 5788888887
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-HhcCCCcHHHHHHHHHHHHh
Q 038112 266 EMVESGIFVDAVTYNAMIDGFCRAG---------KIKECFELWEVM-GRKGCLNVVSYNILIRGLLE 322 (625)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 322 (625)
++ +.. +.+...+..++.+|.+.| .+++|+++++.+ .+.+|.....|..+...+..
T Consensus 301 ~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 301 DL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred Hh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 77 332 335677778888887764 257888888888 77777777788777665543
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.72 E-value=1.4e-15 Score=143.13 Aligned_cols=245 Identities=11% Similarity=0.011 Sum_probs=190.2
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCC-hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKL-VVHVSRILELIEIQKCYCPEDVALSVIQAYG 84 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (625)
..++.++..+|++++|+..|+.+++.+ |.+..+|..++.++...|+ +++|+..|++++..+| .+..+|..++.++.
T Consensus 101 ~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 101 DYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
Confidence 567888999999999999999999988 9999999999999999997 9999999999999975 58899999999999
Q ss_pred ccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112 85 KNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER 164 (625)
Q Consensus 85 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 164 (625)
..|++++|+..|+++.... +.+..+|..+..++...|++++|+..|+++++.
T Consensus 178 ~~g~~~eAl~~~~kal~ld----------------------------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQD----------------------------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC----------------------------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 9999999999999885533 346677777888888888888888888888877
Q ss_pred CCCCCchhhHHHHHHHHh-cCChhHH-----HHHHHHHHhCCCCCCCcchHHHHHHHHHhcC--ChhhHHHHHHHHHhCC
Q 038112 165 GVETNVVCYNILIDGFFK-KGDYMRA-----KEIWERLVMETSVYPNVVTYNVMINGLCKCG--RFDECLEMWDRMKKNE 236 (625)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~-~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~ 236 (625)
++. +...|+.+..++.. .|..++| ++.|++.+... +.+..+|+.+..++...| ++++|++.+.++ +..
T Consensus 230 ~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~ 305 (382)
T 2h6f_A 230 DVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS 305 (382)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT
T ss_pred CCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC
Confidence 543 67778888888877 5554666 47777777653 455667888887788777 578888888777 332
Q ss_pred CCCChhhHHHHHHHHHhcC---------CHHHHHHHHHHH-HHCCCCcCHHHHHHHHHHHH
Q 038112 237 REKDSFTYCSFIHGLCKAG---------NVEGAERVYREM-VESGIFVDAVTYNAMIDGFC 287 (625)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 287 (625)
+.+...+..++.+|...| ..++|+++|+++ .+..+ .....|..+...+.
T Consensus 306 -p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 306 -HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT-IRKEYWRYIGRSLQ 364 (382)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHH
Confidence 345667777777777763 257888888888 55432 24455555555443
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.1e-15 Score=135.03 Aligned_cols=230 Identities=13% Similarity=0.074 Sum_probs=125.3
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 038112 309 NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNR 388 (625)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~ 388 (625)
....+..++..+...|++++|+..|+++.+.. .+...+..+...+...|++++|...++++...
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-------------- 67 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQ-------------- 67 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------------
Confidence 34566667777777777777777777777765 46667777777777777777777777743321
Q ss_pred HhhCC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 038112 389 MDKHG--CKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKP 466 (625)
Q Consensus 389 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 466 (625)
....+ .+....++..+...+...|++++|...|+++.... |+. ..+...|++++|...++++.... +.
T Consensus 68 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~ 137 (258)
T 3uq3_A 68 GREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PE 137 (258)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HH
T ss_pred CcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cc
Confidence 00100 00014566777777777778888877777777642 231 22334455555555555555431 11
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038112 467 DMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMD 546 (625)
Q Consensus 467 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 546 (625)
+...+..++..+...|++++|...++++.+.. +.+..++..++.++...|++++|...++++.+.. +.+...+..++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 215 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 215 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHH
Confidence 23344444444555555555555555554432 2234444444444555555555555555444431 223444444444
Q ss_pred HHHccCChhHHHHHHHHHHH
Q 038112 547 GLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 547 ~~~~~g~~~~A~~~~~~~~~ 566 (625)
++...|++++|...++++++
T Consensus 216 ~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 216 AQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 45555555555554444444
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.71 E-value=2.7e-15 Score=136.58 Aligned_cols=253 Identities=11% Similarity=0.015 Sum_probs=141.8
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChH
Q 038112 38 PHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFE 117 (625)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (625)
+..+...+..+...|++++|...|+.+++..| .+...+..++.++...|++++|+..|+++.. .+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~------------ 68 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVN------------ 68 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSC------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccC------------
Confidence 34445556666666666666666666666543 2444556666666666666666666655532 110
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHH
Q 038112 118 KAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLV 197 (625)
Q Consensus 118 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 197 (625)
+.......|..+...+...|++++|+..|+++.+..+ .+..++..++.++...|++++|+..+++..
T Consensus 69 ------------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 69 ------------ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp ------------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred ------------chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 0011123355566666666666666666666666532 245566666666666666666666666665
Q ss_pred hCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CC
Q 038112 198 METSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGN---VEGAERVYREMVESG-IF 273 (625)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~ 273 (625)
+. .+.+...+..+...+...+++++|.+.|+++.+..+ .+...+..+...+...|+ +++|...++++.+.. ..
T Consensus 136 ~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 212 (272)
T 3u4t_A 136 RP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212 (272)
T ss_dssp CS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGG
T ss_pred hc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcc
Confidence 54 233444555555233334466666666666665432 234555556666666565 556666666655431 01
Q ss_pred cC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 038112 274 VD------AVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGL 320 (625)
Q Consensus 274 ~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (625)
|+ ..++..+...|...|++++|.+.|+++....|.+..++..+....
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 213 GAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 12 145556666777777777777777777777666666665554443
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.70 E-value=1.4e-14 Score=131.86 Aligned_cols=240 Identities=14% Similarity=0.033 Sum_probs=163.4
Q ss_pred chhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC--hhhHHHH
Q 038112 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKD--SFTYCSF 247 (625)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l 247 (625)
+..+...+..+...|++++|+..|+.+.+.. +.+...+..++.++...|++++|+..+++.......++ ...|..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 3455666777777777777777777777653 34455677777777777777777777777776321111 1236777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHH
Q 038112 248 IHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVD 327 (625)
Q Consensus 248 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 327 (625)
...+...|++++|+..|+++.+..+. +..++..++.+|...|++++|++.+++.....|.+..++..+...+...++++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 77777888888888888877776433 56777778888888888888888888887777777788887773444455888
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCc----cHHH
Q 038112 328 EAISIWELLREKNCNADSTTHGVLINGLCKNGY---LNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKL----NAYT 400 (625)
Q Consensus 328 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 400 (625)
+|...|+++.+..+. +...+..+...+...|+ ++.|...++++.. +......+ ...+
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---------------~~~~~~~~~~~~~~~~ 223 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE---------------VCAPGGAKYKDELIEA 223 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH---------------HHGGGGGGGHHHHHHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH---------------HHhcccccchHHHHHH
Confidence 888888888777433 45566666677776676 6667777765432 11111111 1256
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038112 401 CNSLMNGFIQASKLENAIFLFKEMSRKG 428 (625)
Q Consensus 401 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 428 (625)
+..+...|...|++++|...|+++.+..
T Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 224 NEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 7778888888899999999998888764
No 45
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.69 E-value=1e-12 Score=132.03 Aligned_cols=427 Identities=11% Similarity=0.050 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCC---hhHHHHHH
Q 038112 117 EKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGD---YMRAKEIW 193 (625)
Q Consensus 117 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~ 193 (625)
.+-+..|++.+..+ |-|...|..++..+.+.+.++.+..+|+++... .|.....|...+....+.|+ ++.+..+|
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 34444555555555 567777888887777777788888888887776 45566777777777777777 78888888
Q ss_pred HHHHhCCCCCCCcchHHHHHHHHHhcCCh--------hhHHHHHHHHHh-CCC-CC-ChhhHHHHHHHHHh---------
Q 038112 194 ERLVMETSVYPNVVTYNVMINGLCKCGRF--------DECLEMWDRMKK-NER-EK-DSFTYCSFIHGLCK--------- 253 (625)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~--------- 253 (625)
++.+.....+|++..|...+....+.++. +...++|+.... .|. .+ +...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 88776532236777777766655555543 223356665543 233 23 33456555554332
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-------------CCHHHHHHHHHHHHhcC-------C------
Q 038112 254 AGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA-------------GKIKECFELWEVMGRKG-------C------ 307 (625)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~a~~~~~~~~~~~-------~------ 307 (625)
.++++.+..+|+.++......-..+|......-... .+++.|...+.++.... |
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 234566777777777532111122332211111110 11222333332221100 0
Q ss_pred -----C--------cHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH-H
Q 038112 308 -----L--------NVVSYNILIRGLLENG-------KVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAI-Q 366 (625)
Q Consensus 308 -----~--------~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~ 366 (625)
+ ....|...+..--..+ ..+.+..+|++.+...+ .....|...+..+...|+.+.|. .
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 0 0123333333222221 01223344555544422 24444544454444555554453 5
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------CCC-----
Q 038112 367 ILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGC---------SPT----- 432 (625)
Q Consensus 367 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~----- 432 (625)
++++ ... .++.+...|...+....+.|+++.|.++|+.+..... .|+
T Consensus 366 il~r------------------Ai~-~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~ 426 (679)
T 4e6h_A 366 YLKL------------------GQQ-CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAI 426 (679)
T ss_dssp HHHH------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHH------------------HHH-hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhh
Confidence 5442 221 1223444455555555555566666666655543200 011
Q ss_pred -------hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcc-CCHHHHHHHHHHHHhCCCCCCHH
Q 038112 433 -------VVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQS-KKIDMALKLCCQFLQKGFTPDVT 504 (625)
Q Consensus 433 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~ 504 (625)
...|...+....+.|..+.|..+|.++++.........|...+....+. ++.+.|.++|+..++. .+.+..
T Consensus 427 ~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~ 505 (679)
T 4e6h_A 427 NQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGE 505 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHH
T ss_pred hhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchH
Confidence 1234444444445555555555555555430011122222222222222 2355555555555554 233444
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 505 MYNILIHGLCSAGKVEDALQLYSNMKKRNCVP--NLVTYNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 505 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
.+...+......|+.+.|..+|+++.....++ ....|...+..-...|+.+.+..+.+++.+
T Consensus 506 ~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 506 YINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555556666665555542111 234455555555555555555555555555
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.68 E-value=8e-14 Score=126.70 Aligned_cols=228 Identities=11% Similarity=0.005 Sum_probs=155.7
Q ss_pred CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc----cCCchHHHHHHHHhHHhhCCCcchh
Q 038112 35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK----NSMPDKALDVFQRMNEIFGCEAGIL 110 (625)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 110 (625)
|.++.++..++..+...|++++|.+.|+++++. .+...+..++.+|.. .+++++|...|++..
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~---------- 69 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC---------- 69 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH----------
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH----------
Confidence 566777788888888888888888888888773 356677777777777 666666666666652
Q ss_pred hhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHh----
Q 038112 111 CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVK----SGDLLGALAVFDEMFERGVETNVVCYNILIDGFFK---- 182 (625)
Q Consensus 111 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 182 (625)
+.+ +..++..+...+.. .+++++|+..|++..+.+ ++..+..+..+|..
T Consensus 70 -----------------~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 70 -----------------DLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp -----------------HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSS
T ss_pred -----------------HCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCc
Confidence 222 45666677777777 777777777777777764 56667777777777
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHh----c
Q 038112 183 KGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCK----CGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCK----A 254 (625)
Q Consensus 183 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 254 (625)
.+++++|+..|++..+.+ +...+..+...+.. .+++++|+..|++..+.+ +...+..+...|.. .
T Consensus 127 ~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSC
T ss_pred ccCHHHHHHHHHHHHhcC----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 777777777777777653 44556666666666 677777777777766542 34556666666766 7
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q 038112 255 GNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR----AGKIKECFELWEVMGRKGCL 308 (625)
Q Consensus 255 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~ 308 (625)
+++++|+..|++..+.+ +...+..+..+|.. .+++++|.+.|+.....++.
T Consensus 200 ~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 200 KNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred ccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 77777777777776653 25556666666666 67777777777776665543
No 47
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.68 E-value=2.4e-12 Score=129.35 Aligned_cols=445 Identities=10% Similarity=0.016 Sum_probs=282.3
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch-------hhhcCC---hHHHHHHH
Q 038112 54 VVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI-------LCRKRQ---FEKAKRFL 123 (625)
Q Consensus 54 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~---~~~A~~~~ 123 (625)
..+-...|+..+..+| .+...|..++..+.+.+.++.++.+|+++...+|..... -.+.++ ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 4445556666666653 477777777777777777777777777777766666555 233455 77777777
Q ss_pred HHHHHCC-CCCCHhHHHHHHHHHHhcCCh--------hhHHHHHHHHHhC-CC-CCC-chhhHHHHHHHH---------h
Q 038112 124 NSLWEKG-LKPDVYSYGTVINGLVKSGDL--------LGALAVFDEMFER-GV-ETN-VVCYNILIDGFF---------K 182 (625)
Q Consensus 124 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~~---------~ 182 (625)
++.+... .+|++..|...+....+.++. +...++|+.+... |. .++ ...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 7777653 147888898888876665554 3345778776654 55 443 356766665543 2
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 038112 183 KGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAER 262 (625)
Q Consensus 183 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 262 (625)
.++.+.++.+|++++..+ ...-...|......-...+ ...+.+++.+. ..+++.|..
T Consensus 207 q~~~~~~R~iy~raL~iP-~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~---------------------~~~y~~Ar~ 263 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQP-MDCLESMWQRYTQWEQDVN-QLTARRHIGEL---------------------SAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHHHTTSC-CSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH---------------------HHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHhcC-cchHHHHHHHh---------------------hHHHHHHHH
Confidence 345778888998887532 1111223332222111111 11122222111 112233333
Q ss_pred HHHHHHHC--CC----C-----------c-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCcH
Q 038112 263 VYREMVES--GI----F-----------V-----D---AVTYNAMIDGFCRAG-------KIKECFELWEVMGRKGCLNV 310 (625)
Q Consensus 263 ~~~~~~~~--~~----~-----------~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~ 310 (625)
.+.++... ++ + | + ...|...+..-...+ ..+.+..+|+++....|...
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~ 343 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAP 343 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCH
Confidence 33332110 11 0 1 0 133444443322222 13446678999988888899
Q ss_pred HHHHHHHHHHHhCCCHHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 038112 311 VSYNILIRGLLENGKVDEAI-SIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRM 389 (625)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~ 389 (625)
..|...+..+...|+.++|. .+|++..... +.+...+...+......|+++.|..+++++....... ++.+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~-------~~~~ 415 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD-------LAAL 415 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-------hhhh
Confidence 99999999999999999996 9999998763 3355566677888888999999999999655321000 0000
Q ss_pred hhCCCC-----------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcc-CCHHHHHHHHH
Q 038112 390 DKHGCK-----------LNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKV-ERFGEAYSFVK 457 (625)
Q Consensus 390 ~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~ 457 (625)
... .+ ....+|...+....+.|..+.|+.+|.+..+.........|...+..-.+. ++.+.|..+|+
T Consensus 416 ~~~-~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife 494 (679)
T 4e6h_A 416 MED-DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLE 494 (679)
T ss_dssp HHH-STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred hhc-cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 010 11 123468888888888999999999999998761222344454444443344 45899999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 038112 458 EMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTP--DVTMYNILIHGLCSAGKVEDALQLYSNMKKR 532 (625)
Q Consensus 458 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 532 (625)
..++. .+.+...+...+......|+.+.|..+|++.+....++ ....|...+..-...|+.+.+..+.+++.+.
T Consensus 495 ~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 495 LGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99986 44466667788888888999999999999999874322 3568888888888999999999999999986
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=2.6e-13 Score=123.27 Aligned_cols=222 Identities=13% Similarity=0.018 Sum_probs=106.8
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCchHHHHH
Q 038112 309 NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCK----NGYLNKAIQILNEVEEGGEGRLADAAS 384 (625)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~a~~ 384 (625)
++.++..+...+...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~-------------- 67 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAK-------------- 67 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH--------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHH--------------
Confidence 44444555555555555555555555544421 23334444444444 4444444444442
Q ss_pred HHHHHhhCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----cCCHHHHHHHH
Q 038112 385 LVNRMDKHGCKLNAYTCNSLMNGFIQ----ASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCK----VERFGEAYSFV 456 (625)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~ 456 (625)
....+ ++..+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..+
T Consensus 68 ----a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~ 137 (273)
T 1ouv_A 68 ----ACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYF 137 (273)
T ss_dssp ----HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred ----HHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 11111 33344444444444 555555555555554432 34444445555544 55555555555
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHH
Q 038112 457 KEMLEKGWKPDMITYSLLINGLCQ----SKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCS----AGKVEDALQLYSN 528 (625)
Q Consensus 457 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 528 (625)
++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+..+|.. .+++++|...|++
T Consensus 138 ~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~ 211 (273)
T 1ouv_A 138 TKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSK 211 (273)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred HHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 5555432 33344444444444 555555555555555432 33444455555555 5555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHH
Q 038112 529 MKKRNCVPNLVTYNTLMDGLFK----TGDCDKALEIWNHILE 566 (625)
Q Consensus 529 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 566 (625)
..+.+ +...+..++.+|.. .+++++|...|+++.+
T Consensus 212 a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 212 ACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence 55532 24444555555555 5555555555555555
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.67 E-value=1.5e-15 Score=138.60 Aligned_cols=252 Identities=10% Similarity=-0.057 Sum_probs=179.5
Q ss_pred HHHHccCChhHHHHHHHhhccCCC--CCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC
Q 038112 10 NLLKAEKNPHTALALFDSATREPG--YAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS 87 (625)
Q Consensus 10 ~~l~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (625)
.++..+|++++|+..|+.+++... .|.++.++..++.++...|++++|...|+.+++.++ .+..++..++.++...|
T Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTT
T ss_pred eccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcc
Confidence 345567899999999999887632 145678889999999999999999999999999874 47889999999999999
Q ss_pred CchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 038112 88 MPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVE 167 (625)
Q Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 167 (625)
++++|+..|+++.... +.+..++..+...+...|++++|...|+++.+..
T Consensus 92 ~~~~A~~~~~~al~~~----------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-- 141 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELD----------------------------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-- 141 (275)
T ss_dssp CHHHHHHHHHHHHHHC----------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHhcC----------------------------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--
Confidence 9999999998885532 2345667777777888888888888888887763
Q ss_pred CCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC---ChhhH
Q 038112 168 TNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREK---DSFTY 244 (625)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~ 244 (625)
|+..........+...|++++|...+....... +++...+ .++..+...++.++|+..+++.....+.. +...+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 218 (275)
T 1xnf_A 142 PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETN 218 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHH
Confidence 333333444445566688888888887766652 3343343 36666777777788888887776442211 14567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038112 245 CSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELW 299 (625)
Q Consensus 245 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 299 (625)
..++..+...|++++|...|++++...+. +. .....++...|++++|++.+
T Consensus 219 ~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 219 FYLGKYYLSLGDLDSATALFKLAVANNVH-NF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TC---HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCch-hH---HHHHHHHHHHHHHHhhHHHH
Confidence 77888888888888888888888876321 22 22345566777777777665
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=4.1e-15 Score=135.70 Aligned_cols=248 Identities=11% Similarity=-0.034 Sum_probs=192.6
Q ss_pred hhhcCChHHHHHHHHHHHHCCC---CCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCCh
Q 038112 110 LCRKRQFEKAKRFLNSLWEKGL---KPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDY 186 (625)
Q Consensus 110 ~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 186 (625)
+...|++++|+..|++++.... +.+..++..+...+...|++++|...|+++.+..+ .+..++..++.++...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCH
Confidence 4456788888888888887631 22467788899999999999999999999998843 3788899999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038112 187 MRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYRE 266 (625)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 266 (625)
++|...|+++.+.. +.+..++..++.++...|++++|...++++.+.. |+.......+..+...|++++|...+.+
T Consensus 94 ~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 94 DAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999998863 4567889999999999999999999999998764 3333444445555777999999999988
Q ss_pred HHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 038112 267 MVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL----NVVSYNILIRGLLENGKVDEAISIWELLREKNCN 342 (625)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 342 (625)
...... ++...+ .++..+...++.++|.+.++......+. +..++..++.++...|++++|...|+++....
T Consensus 170 ~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 245 (275)
T 1xnf_A 170 HFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-- 245 (275)
T ss_dssp HHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--
Confidence 877632 233333 4677788888899999999988766543 36888999999999999999999999999874
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHH
Q 038112 343 ADSTTHGVLINGLCKNGYLNKAIQIL 368 (625)
Q Consensus 343 ~~~~~~~~l~~~~~~~~~~~~a~~~~ 368 (625)
|+. +.....++...|++++|++.+
T Consensus 246 p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CTT--CHHHHHHHHHHHHHHHC----
T ss_pred chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 322 223345666777777776654
No 51
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.65 E-value=1.6e-15 Score=147.15 Aligned_cols=273 Identities=12% Similarity=0.053 Sum_probs=160.8
Q ss_pred HHHHHHHccCChhHHHHHHHhhccCCCCCCCH----HHHHHHHHHhhCCCChhHHHHHHHHHHHhc-----CCCCHHHHH
Q 038112 7 RLLNLLKAEKNPHTALALFDSATREPGYAHSP----HLFHHILRRLIDPKLVVHVSRILELIEIQK-----CYCPEDVAL 77 (625)
Q Consensus 7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~ 77 (625)
.++..+...|++++|+..|+.++... |.++ .++..++..+...|++++|...+++++... .+....++.
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 45677778888888888888877765 5553 466777778888888888888888776542 111234666
Q ss_pred HHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-------
Q 038112 78 SVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGD------- 150 (625)
Q Consensus 78 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------- 150 (625)
.++..+...|++++|...++++....+. . .+......++..+...+...|+
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~~~--------------------~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 149 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDISRE--------------------L--NDKVGEARALYNLGNVYHAKGKSFGCPGP 149 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------H--TCHHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHh--------------------c--ccccchHHHHHHHHHHHHHcCCccccccc
Confidence 7777788888888888877776442211 0 0001124467777777888888
Q ss_pred -------------hhhHHHHHHHHHhC----C-CCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC----cch
Q 038112 151 -------------LLGALAVFDEMFER----G-VETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPN----VVT 208 (625)
Q Consensus 151 -------------~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~ 208 (625)
++.|...+++..+. + .+....++..++.++...|++++|...+++..+.....++ ..+
T Consensus 150 ~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 229 (406)
T 3sf4_A 150 QDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 229 (406)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 77777777766543 1 1111235666677777777777777777766543111111 125
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----cCHHH
Q 038112 209 YNVMINGLCKCGRFDECLEMWDRMKKNERE-KD----SFTYCSFIHGLCKAGNVEGAERVYREMVESGIF-----VDAVT 278 (625)
Q Consensus 209 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~ 278 (625)
+..+...+...|++++|...+++....... .+ ..++..+...+...|++++|...+++..+.... ....+
T Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 309 (406)
T 3sf4_A 230 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRA 309 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 556666666667777666666665432110 01 234555555666666666666666555432100 01334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112 279 YNAMIDGFCRAGKIKECFELWEVMG 303 (625)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~~~ 303 (625)
+..+..+|...|++++|.+.+++..
T Consensus 310 ~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 310 CWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555543
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=8.3e-14 Score=125.02 Aligned_cols=202 Identities=13% Similarity=0.032 Sum_probs=165.3
Q ss_pred HhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHH
Q 038112 135 VYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMIN 214 (625)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 214 (625)
...+..+...+...|++++|...|+++.+.. +.+...+..++.++...|++++|.+.++++.+.. +.+...+..++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHH
Confidence 4567778888888999999999999888774 3367788888888999999999999998888763 446677888888
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHH
Q 038112 215 GLCKCGRFDECLEMWDRMKKNEREK-DSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIK 293 (625)
Q Consensus 215 ~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (625)
.+...|++++|.+.++++...+..| +...+..++..+...|++++|...++++.+... .+...+..++.++...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHH
Confidence 8899999999999998887622223 456677788888889999999999988887643 36778888888899999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 038112 294 ECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKN 340 (625)
Q Consensus 294 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 340 (625)
+|...++.+....+.+...+..+...+...|++++|...++.+.+..
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999888888888888888888889999999999998888774
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=6.5e-15 Score=131.54 Aligned_cols=207 Identities=12% Similarity=0.009 Sum_probs=140.4
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK 85 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (625)
..++..+...|++++|+..|+.+++.. |.++.++..++..+...|++++|.+.++.+++..+ .+..++..++.++..
T Consensus 27 ~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 27 GQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVYVV 103 (243)
T ss_dssp ---------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHHHH
Confidence 345566667777777777777777655 66777777777777777777777777777777653 366677777777777
Q ss_pred cCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 038112 86 NSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERG 165 (625)
Q Consensus 86 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 165 (625)
.|++++|...++++.+ .. +.+...+..+...+...|++++|...++++.+..
T Consensus 104 ~~~~~~A~~~~~~~~~---------------------------~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 155 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALR---------------------------AG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155 (243)
T ss_dssp TTCHHHHHHHHHHHHH---------------------------HT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred hccHHHHHHHHHHHHH---------------------------hC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 7777777777766644 22 3456677778888888888888888888888763
Q ss_pred CCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHH
Q 038112 166 VETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYC 245 (625)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 245 (625)
+.+...+..++.++...|++++|+..++.+.+.. +.+..++..++.++...|++++|...++++.+..+ .+...+.
T Consensus 156 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~ 231 (243)
T 2q7f_A 156 -ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP-DHMLALH 231 (243)
T ss_dssp -TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT-TCHHHHH
T ss_pred -CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc-chHHHHH
Confidence 3366778888888888888888888888887763 44566788888888888888888888888877643 2444444
Q ss_pred HH
Q 038112 246 SF 247 (625)
Q Consensus 246 ~l 247 (625)
.+
T Consensus 232 ~~ 233 (243)
T 2q7f_A 232 AK 233 (243)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=9.4e-14 Score=124.67 Aligned_cols=208 Identities=12% Similarity=0.018 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 038112 398 AYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLING 477 (625)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 477 (625)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5678888899999999999999999998764 3367788899999999999999999999998863 3467788899999
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhH
Q 038112 478 LCQSKKIDMALKLCCQFLQKGFTP-DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDK 556 (625)
Q Consensus 478 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 556 (625)
+...|++++|.++++++.+.+..| +...+..++.++...|++++|..+++++.+.. +.+...+..++.++...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998832234 56788889999999999999999999999863 4568899999999999999999
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 038112 557 ALEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWH 612 (625)
Q Consensus 557 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 612 (625)
|...++++++ ..| +...+..+...+...|++++|.++++++.+. .|+...+.
T Consensus 194 A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~ 246 (252)
T 2ho1_A 194 ARQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHH
T ss_pred HHHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHH
Confidence 9999999998 455 5677888889999999999999999999874 36554443
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=1.2e-13 Score=121.63 Aligned_cols=204 Identities=11% Similarity=0.012 Sum_probs=164.5
Q ss_pred CCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHH
Q 038112 132 KPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNV 211 (625)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 211 (625)
+.+...+..+...+...|++++|+..|+++.+.. +.+...+..++.++...|++++|.+.++++.+.. +.+..++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~ 81 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNN 81 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHH
Confidence 3456678888888889999999999999888874 3367788888888889999999999998888763 456667888
Q ss_pred HHHHHHhc-CChhhHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 038112 212 MINGLCKC-GRFDECLEMWDRMKKNEREK-DSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289 (625)
Q Consensus 212 l~~~~~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (625)
++..+... |++++|...++++...+..| +...+..++..+...|++++|+..++++.+..+. +...+..++.++...
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHc
Confidence 88888888 99999999998888722222 2566778888888899999999999888876432 577888888888889
Q ss_pred CCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112 290 GKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREK 339 (625)
Q Consensus 290 ~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (625)
|++++|.+.++.+....| .+...+..+...+...|+.+++..+++.+...
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999988888888 78888888888888888999888888888766
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=1.7e-13 Score=120.66 Aligned_cols=213 Identities=8% Similarity=-0.034 Sum_probs=179.1
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 038112 395 KLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLL 474 (625)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 474 (625)
+.+...+..+...+...|++++|...|+++.+..+ .+...+..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 34667788899999999999999999999987643 357788899999999999999999999998863 4467788899
Q ss_pred HHHHhcc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 038112 475 INGLCQS-KKIDMALKLCCQFLQKGFTP-DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTG 552 (625)
Q Consensus 475 ~~~~~~~-~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 552 (625)
+..+... |++++|...++++.+.+..| +...+..++.++...|++++|...++++.+.. +.+...+..++.++...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 9999999 99999999999999832233 36788899999999999999999999999863 456889999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 038112 553 DCDKALEIWNHILEERLRP--DIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHIL 614 (625)
Q Consensus 553 ~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 614 (625)
++++|..+++++++ ..| +...+..+...+...|+.++|..+++.+.+. .|+......+
T Consensus 162 ~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~ 221 (225)
T 2vq2_A 162 QLGDADYYFKKYQS--RVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTV 221 (225)
T ss_dssp CHHHHHHHHHHHHH--HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 99999999999998 444 5667777778888999999999999999753 3665544433
No 57
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=6.3e-16 Score=155.07 Aligned_cols=136 Identities=11% Similarity=0.134 Sum_probs=102.5
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038112 467 DMITYSLLINGLCQSKKIDMALKLCCQFLQ---KGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNT 543 (625)
Q Consensus 467 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 543 (625)
-..||+.++.+|++.|++++|.++|.+|.+ .|..||..+||.|+.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345788888888888888888888877654 46788888888888888888888888888888888888888888888
Q ss_pred HHHHHHccCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC
Q 038112 544 LMDGLFKTGDC-DKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPT 607 (625)
Q Consensus 544 l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (625)
++.++++.|+. ++|.+++++|.+.|+.||..+|+.++..+.+ +..++.++++ ..++.|+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCC
Confidence 88888888774 6778888888888888888888877755443 2445555555 3344443
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=1.6e-14 Score=128.87 Aligned_cols=202 Identities=11% Similarity=0.068 Sum_probs=142.9
Q ss_pred CHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHH
Q 038112 134 DVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMI 213 (625)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 213 (625)
....|..+...+...|++++|...|+++.+.. +.+...+..++.++...|++++|+..++++.+.. +.+...+..++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHH
Confidence 44556677777778888888888888887763 3366777778888888888888888888877753 44566777788
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHH
Q 038112 214 NGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIK 293 (625)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (625)
..+...|++++|.+.++++.+..+ .+...+..++..+...|++++|...++++.+... .+...+..++..+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 888888888888888888776553 4566777788888888888888888888877643 36777788888888888888
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 038112 294 ECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKN 340 (625)
Q Consensus 294 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 340 (625)
+|.+.++.+....+.+..++..++.++...|++++|...++++.+..
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 88888888888877788888888888888888888888888888764
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.63 E-value=2.6e-14 Score=138.63 Aligned_cols=299 Identities=15% Similarity=0.046 Sum_probs=189.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-ChhhH
Q 038112 278 TYNAMIDGFCRAGKIKECFELWEVMGRKGCLN----VVSYNILIRGLLENGKVDEAISIWELLREK----NCNA-DSTTH 348 (625)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~ 348 (625)
.+......+...|++++|...|+.+....+.+ ..++..++..+...|++++|...++++... +..| ....+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 33444444445555555555555544444333 234445555555555555555555544322 1111 12344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCC---------------
Q 038112 349 GVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASK--------------- 413 (625)
Q Consensus 349 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------- 413 (625)
..+...+...|++++|...+.+... +.... ........++..+...|...|+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~-----------~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 157 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLD-----------ISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPE 157 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-----------HHHHH--TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-----------HHHhc--ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhh
Confidence 5555666666666666666664322 11111 0111124467778888888898
Q ss_pred -----HHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHH
Q 038112 414 -----LENAIFLFKEMSRK----GCSP-TVVSYNTLINGLCKVERFGEAYSFVKEMLEKGW-KPD----MITYSLLINGL 478 (625)
Q Consensus 414 -----~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~ 478 (625)
+++|...+++.... +..+ ...++..+...+...|++++|...+++..+... .++ ..++..+...+
T Consensus 158 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 237 (406)
T 3sf4_A 158 EVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 237 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 99999998886542 1111 234677888889999999999999998875310 111 23678888899
Q ss_pred hccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHH
Q 038112 479 CQSKKIDMALKLCCQFLQK----GFTP-DVTMYNILIHGLCSAGKVEDALQLYSNMKKR----NCVP-NLVTYNTLMDGL 548 (625)
Q Consensus 479 ~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~ 548 (625)
...|++++|...+++..+. +..+ ...++..++.+|...|++++|...++++.+. +..+ ...++..++.+|
T Consensus 238 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 317 (406)
T 3sf4_A 238 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAY 317 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 9999999999999988753 1111 1557788899999999999999999988763 1111 156788899999
Q ss_pred HccCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhhcCCh
Q 038112 549 FKTGDCDKALEIWNHILEE----RLRP-DIISYNITLKGLCSCSRM 589 (625)
Q Consensus 549 ~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~ 589 (625)
...|++++|...++++++. +..+ ...++..+...+...|+.
T Consensus 318 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 318 TALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 9999999999999998872 2122 235667777788777765
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.62 E-value=4.4e-14 Score=137.21 Aligned_cols=274 Identities=15% Similarity=0.069 Sum_probs=153.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-CCChhhHH
Q 038112 279 YNAMIDGFCRAGKIKECFELWEVMGRKGCLNV----VSYNILIRGLLENGKVDEAISIWELLREK----NC-NADSTTHG 349 (625)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 349 (625)
+..+...+...|++++|+..|+.+....+.+. .++..+..++...|++++|...+++.... +. ......+.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 34455556666666666666666666555443 35566666666666666666666655442 00 11223344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038112 350 VLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGC-KLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKG 428 (625)
Q Consensus 350 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 428 (625)
.+...+...|++++|...+++... .....+. +....
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~--------------~~~~~~~~~~~~~----------------------------- 167 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLT--------------LARQLGDRLSEGR----------------------------- 167 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--------------HHHHHTCHHHHHH-----------------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--------------HHHHhhchHHHHH-----------------------------
Confidence 445555555555555555553221 1111111 11122
Q ss_pred CCCChhhHHHHHHHHhccCC-----------------HHHHHHHHHHHHHC----CCC-CCHhhHHHHHHHHhccCCHHH
Q 038112 429 CSPTVVSYNTLINGLCKVER-----------------FGEAYSFVKEMLEK----GWK-PDMITYSLLINGLCQSKKIDM 486 (625)
Q Consensus 429 ~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~ 486 (625)
++..+...+...|+ +++|+..+++..+. +.. .....+..+...+...|++++
T Consensus 168 ------~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 241 (411)
T 4a1s_A 168 ------ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQA 241 (411)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ------HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHH
Confidence 33444444444444 55555555444321 001 112355566666777777777
Q ss_pred HHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC--CC---CCHHHHHHHHHHHHccCChhH
Q 038112 487 ALKLCCQFLQKGF-TPD----VTMYNILIHGLCSAGKVEDALQLYSNMKKRN--CV---PNLVTYNTLMDGLFKTGDCDK 556 (625)
Q Consensus 487 A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~ 556 (625)
|...+++..+... .++ ...+..++.+|...|++++|...++++.... .. ....++..++.++...|++++
T Consensus 242 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (411)
T 4a1s_A 242 AIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNT 321 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 7777766654210 001 2366677777888888888888887776531 00 114567778888888888888
Q ss_pred HHHHHHHHHHc----CCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 557 ALEIWNHILEE----RLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 557 A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
|..+++++++. +..+ ...++..+..+|.+.|++++|.+++++.++
T Consensus 322 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 322 AIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88888887762 1011 124667777788888888888888888765
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.62 E-value=7.8e-15 Score=142.55 Aligned_cols=270 Identities=13% Similarity=-0.010 Sum_probs=140.6
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHccCCchHHHHHHHHhHHhh------CCCc
Q 038112 38 PHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPE----DVALSVIQAYGKNSMPDKALDVFQRMNEIF------GCEA 107 (625)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~ 107 (625)
...+..++..+...|++++|...|+++++..+. +. .++..++.++...|++++|...|+++.... +...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 444455555555666666666666666655432 22 345555556666666666666665554421 1111
Q ss_pred ch-------hhhcCChHHHHHHHHHHHHC----C-CCCCHhHHHHHHHHHHhcCC-----------------hhhHHHHH
Q 038112 108 GI-------LCRKRQFEKAKRFLNSLWEK----G-LKPDVYSYGTVINGLVKSGD-----------------LLGALAVF 158 (625)
Q Consensus 108 ~~-------~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 158 (625)
.+ +...|++++|...|++++.. + .+....++..+...+...|+ ++.|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 11 45556666666666655432 1 11234567777788888888 77777776
Q ss_pred HHHHhCC-----CCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHH
Q 038112 159 DEMFERG-----VETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMK 233 (625)
Q Consensus 159 ~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 233 (625)
++..+.. .+....++..++.++...|++++|+..+++..+.. +....
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~-------------------------- 258 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA--REFGD-------------------------- 258 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTC--------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--HhcCC--------------------------
Confidence 6654321 01112345555555666666666666655554321 00000
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038112 234 KNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIF-----VDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL 308 (625)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 308 (625)
......++..+...+...|++++|...+++.+..... ....++..+..++...|++++|.+.+++.....+.
T Consensus 259 ---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 259 ---RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp ---HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 0000113444444555555555555555444432100 01344555566666666666666666655433211
Q ss_pred ------cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112 309 ------NVVSYNILIRGLLENGKVDEAISIWELLREK 339 (625)
Q Consensus 309 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (625)
...++..+..++...|++++|...+++....
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3446667777777777777777777777665
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.61 E-value=1.2e-13 Score=127.65 Aligned_cols=219 Identities=11% Similarity=0.035 Sum_probs=156.5
Q ss_pred hHHHHHHHhhccCCCCCCCHHHHHHHHHHhh-------CCCCh-------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 038112 19 HTALALFDSATREPGYAHSPHLFHHILRRLI-------DPKLV-------VHVSRILELIEIQKCYCPEDVALSVIQAYG 84 (625)
Q Consensus 19 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (625)
++|+..|+.++... |.++.+|..++..+. +.|++ ++|..+|+++++.-.|.+..++..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 78999999999887 999999999998876 35886 899999999999423557889999999999
Q ss_pred ccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112 85 KNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVY-SYGTVINGLVKSGDLLGALAVFDEMFE 163 (625)
Q Consensus 85 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 163 (625)
+.|++++|+.+|+++.+..|. +.. +|..++..+.+.|++++|..+|+++++
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~----------------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 162 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI----------------------------DPTLVYIQYMKFARRAEGIKSGRMIFKKARE 162 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS----------------------------CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHhcccc----------------------------CccHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999999999888553322 222 566677777777777777777777776
Q ss_pred CCCCCCchhhHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCC--
Q 038112 164 RGVETNVVCYNILIDGFF-KKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNE-REK-- 239 (625)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~-- 239 (625)
..+ .+...|...+.... ..|++++|+.+|+...+. .+.+...|..++..+.+.|++++|..+|++..... .+|
T Consensus 163 ~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~ 239 (308)
T 2ond_A 163 DAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp STT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred cCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH
Confidence 532 23444443333322 257777777777777665 24455667777777777777777777777777642 222
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038112 240 DSFTYCSFIHGLCKAGNVEGAERVYREMVES 270 (625)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 270 (625)
....|..++......|+.+.|..+++++.+.
T Consensus 240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 240 SGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456666777777777777777777777665
No 63
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=152.90 Aligned_cols=136 Identities=9% Similarity=0.060 Sum_probs=114.3
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHH---CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038112 432 TVVSYNTLINGLCKVERFGEAYSFVKEMLE---KGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNI 508 (625)
Q Consensus 432 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 508 (625)
-..+|+++|.+|++.|+.++|..+|..|.+ .|+.||..||+.++.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345899999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC
Q 038112 509 LIHGLCSAGKV-EDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD 572 (625)
Q Consensus 509 l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 572 (625)
++.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+ +..++..+++ ..++.|+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCC
Confidence 99999999974 7889999999999999999999988765543 3444444444 2345543
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.61 E-value=7e-14 Score=131.72 Aligned_cols=203 Identities=15% Similarity=0.039 Sum_probs=128.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHhccCC--------------------HHHHHH
Q 038112 400 TCNSLMNGFIQASKLENAIFLFKEMSRKGC-SPT----VVSYNTLINGLCKVER--------------------FGEAYS 454 (625)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 454 (625)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 344444445555555555555554433110 011 1244455555555555 666666
Q ss_pred HHHHHHHC----CCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHcCCCHHHHHH
Q 038112 455 FVKEMLEK----GWKP-DMITYSLLINGLCQSKKIDMALKLCCQFLQK----GF-TPDVTMYNILIHGLCSAGKVEDALQ 524 (625)
Q Consensus 455 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 524 (625)
.+++.... +..+ ....+..+...+...|++++|...+++..+. +. .....++..++.++...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66554431 1111 1235666777778888888888888877652 10 1113367788888899999999999
Q ss_pred HHHHHHhC----CCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhhcCChHHHHH
Q 038112 525 LYSNMKKR----NCVP-NLVTYNTLMDGLFKTGDCDKALEIWNHILEE----RLRP-DIISYNITLKGLCSCSRMSDAFE 594 (625)
Q Consensus 525 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 594 (625)
++++.... +.++ ...++..++.++...|++++|...++++++. +-.+ ...++..+...|.+.|++++|.+
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99887753 1111 1567788899999999999999999998772 1111 13467788889999999999999
Q ss_pred HHHHHHHC
Q 038112 595 FLNDALCR 602 (625)
Q Consensus 595 ~~~~~~~~ 602 (625)
+++++.+.
T Consensus 325 ~~~~a~~~ 332 (338)
T 3ro2_A 325 FAEKHLEI 332 (338)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99999863
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.59 E-value=1.3e-14 Score=136.88 Aligned_cols=276 Identities=11% Similarity=0.052 Sum_probs=193.7
Q ss_pred HHHHHHHccCChhHHHHHHHhhccCCCCCCC----HHHHHHHHHHhhCCCChhHHHHHHHHHHHhc-----CCCCHHHHH
Q 038112 7 RLLNLLKAEKNPHTALALFDSATREPGYAHS----PHLFHHILRRLIDPKLVVHVSRILELIEIQK-----CYCPEDVAL 77 (625)
Q Consensus 7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~ 77 (625)
..+..+...|++++|+..|+.+++.. |.+ ..++..++..+...|++++|.+.+++++... .+....++.
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 45678889999999999999988875 556 3667788888999999999999998887642 112245677
Q ss_pred HHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-------
Q 038112 78 SVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGD------- 150 (625)
Q Consensus 78 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------- 150 (625)
.++..+...|++++|...+++..+..+.... ......++..+...+...|+
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~ 145 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELND----------------------KVGEARALYNLGNVYHAKGKSFGCPGP 145 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------------HHHHHHHHHHHHHHHHHHHHTSSSSSC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcC----------------------chHHHHHHHHHHHHHHHcCcccccchh
Confidence 7888888899999999888887542221100 00113356666777777777
Q ss_pred -------------hhhHHHHHHHHHhC----C-CCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC----cch
Q 038112 151 -------------LLGALAVFDEMFER----G-VETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPN----VVT 208 (625)
Q Consensus 151 -------------~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~ 208 (625)
++.|...+++..+. + .+....++..++.++...|++++|...+++..+.....++ ..+
T Consensus 146 ~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 225 (338)
T 3ro2_A 146 QDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 225 (338)
T ss_dssp C----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 78888777776542 1 1112346777888888888888888888877653211111 236
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CcCHHH
Q 038112 209 YNVMINGLCKCGRFDECLEMWDRMKKNERE-KD----SFTYCSFIHGLCKAGNVEGAERVYREMVESGI-----FVDAVT 278 (625)
Q Consensus 209 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~ 278 (625)
+..++..+...|++++|...+++....... .+ ..++..+...+...|++++|...+++..+... .....+
T Consensus 226 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 305 (338)
T 3ro2_A 226 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 305 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 777888888889999988888877643211 11 44677788888899999999998888765311 112446
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038112 279 YNAMIDGFCRAGKIKECFELWEVMGRKG 306 (625)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 306 (625)
+..+..+|...|++++|...+++.....
T Consensus 306 ~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 306 CWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 7788889999999999999998887653
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.58 E-value=1.1e-13 Score=135.82 Aligned_cols=215 Identities=10% Similarity=-0.022 Sum_probs=163.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCh-hhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHH
Q 038112 115 QFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDL-LGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIW 193 (625)
Q Consensus 115 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 193 (625)
.+++++..++...... +.+...+..+...+...|++ ++|+..|+++.+..+ .+...|..++.+|...|++++|++.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566777777666544 45777788888888888888 888888888887743 35778888888888888888888888
Q ss_pred HHHHhCCCCCCCcchHHHHHHHHHhc---------CChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------CC
Q 038112 194 ERLVMETSVYPNVVTYNVMINGLCKC---------GRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKA--------GN 256 (625)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~ 256 (625)
+++.+.. |+...+..+..++... |++++|+..|++..+..+ .+...|..+..+|... |+
T Consensus 161 ~~al~~~---p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 161 SGALTHC---KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHTTC---CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHhhC---CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccch
Confidence 8888753 5567777888888888 888888888888777653 3567777788888777 77
Q ss_pred HHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHH
Q 038112 257 VEGAERVYREMVESGIF--VDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWE 334 (625)
Q Consensus 257 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 334 (625)
+++|+..|++.++..+. .+...+..+..+|...|++++|.+.|++.....|.+..++..+..++...|++++|+..+.
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888775331 3677778888888888888888888888888777777888888888888777777776554
Q ss_pred H
Q 038112 335 L 335 (625)
Q Consensus 335 ~ 335 (625)
+
T Consensus 317 ~ 317 (474)
T 4abn_A 317 K 317 (474)
T ss_dssp T
T ss_pred c
Confidence 3
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.57 E-value=8.4e-13 Score=126.56 Aligned_cols=236 Identities=10% Similarity=0.006 Sum_probs=123.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 038112 315 ILIRGLLENGKVDEAISIWELLREK----NCNA-DSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRM 389 (625)
Q Consensus 315 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~ 389 (625)
..+..+...|++++|+..+++.... +..+ ...++..+...+...|+++.|...+.+... ++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~-----------~~--- 173 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE-----------IY--- 173 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HH---
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------HH---
Confidence 3666777788888888888887664 1111 234567777888888888888888875432 11
Q ss_pred hhCC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 038112 390 DKHG--CKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCS-PT----VVSYNTLINGLCKVERFGEAYSFVKEMLEK 462 (625)
Q Consensus 390 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 462 (625)
...+ .+....++..+...|...|++++|...|++..+.... ++ ..++..+..+|...|++++|...+++..+.
T Consensus 174 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 174 KEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1111 1113446677777888888888888888776643110 11 124555556666666666666666655541
Q ss_pred ----CC-CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHH
Q 038112 463 ----GW-KPDMITYSLLINGLCQSKKIDMALKLCCQFLQK----GFTPDVTMYNILIHGLCSAGK---VEDALQLYSNMK 530 (625)
Q Consensus 463 ----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~ 530 (625)
+. +....++..+...+...|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++..
T Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~ 333 (383)
T 3ulq_A 254 FEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM 333 (383)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT
T ss_pred HHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc
Confidence 11 112334455555555555555555555554431 001111123334444444444 344444443331
Q ss_pred hCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 531 KRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 531 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
. .+.....+..++..|...|++++|...++++++
T Consensus 334 ~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 334 L--YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp C--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0 011123344444555555555555555554443
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=5.3e-13 Score=113.03 Aligned_cols=166 Identities=14% Similarity=0.093 Sum_probs=83.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 038112 397 NAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLIN 476 (625)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 476 (625)
++.+|..+...|...|++++|+..|++..+..+. +...+..+..++...|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3445555555555555555555555555544322 34455555555555555555555555554431 223344444444
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhH
Q 038112 477 GLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDK 556 (625)
Q Consensus 477 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 556 (625)
.+...++++.|...+.+..+.. +.+...+..++.+|...|++++|+..|+++.+.+ +.+..++..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 4555555555555555554432 2234445555555555555555555555555431 2334455555555555555555
Q ss_pred HHHHHHHHHH
Q 038112 557 ALEIWNHILE 566 (625)
Q Consensus 557 A~~~~~~~~~ 566 (625)
|+..|+++++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555554
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=5.8e-13 Score=112.81 Aligned_cols=167 Identities=15% Similarity=0.094 Sum_probs=120.9
Q ss_pred CchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHH
Q 038112 169 NVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFI 248 (625)
Q Consensus 169 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 248 (625)
++.+|..++.++...|++++|++.|++..+.. |.+..++..++.++.+.|++++|+..++......+ .+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHH
Confidence 45566777777777777777777777776653 44556677777777777777777777777665543 3555666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHH
Q 038112 249 HGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDE 328 (625)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (625)
..+...++++.+...+.+.....+. +...+..+..++.+.|++++|++.|++..+..|.+..+|..++.++...|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 7777777777777777777765432 567777777778888888888888888877777778888888888888888888
Q ss_pred HHHHHHHHHHc
Q 038112 329 AISIWELLREK 339 (625)
Q Consensus 329 a~~~~~~~~~~ 339 (625)
|+..|++.++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 88888877765
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.55 E-value=1.1e-12 Score=125.67 Aligned_cols=234 Identities=7% Similarity=-0.053 Sum_probs=153.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCC-CC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CcCHHHHH
Q 038112 212 MINGLCKCGRFDECLEMWDRMKKNER-EK----DSFTYCSFIHGLCKAGNVEGAERVYREMVESG--I----FVDAVTYN 280 (625)
Q Consensus 212 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 280 (625)
.+..+...|++++|+..+++...... .+ ...++..+...|...|++++|+..+.+.++.. . .....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 55667777888888888877764310 01 23457777778888888888888887776531 1 11235677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-CCChhhHH
Q 038112 281 AMIDGFCRAGKIKECFELWEVMGRKGCL------NVVSYNILIRGLLENGKVDEAISIWELLREK----NC-NADSTTHG 349 (625)
Q Consensus 281 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 349 (625)
.+..+|...|++++|++.+++.....+. ...++..++.++...|++++|+..+++.... +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7788888888888888888877644221 3357888888889999999999888888762 22 22455677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCC---HHHHHHHHHHHHh
Q 038112 350 VLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASK---LENAIFLFKEMSR 426 (625)
Q Consensus 350 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~ 426 (625)
.+...+...|++++|...+++... + ....+.+.....+..+...+...|+ +++|..++++...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~-----------~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~ 334 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMA-----------Y---SQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML 334 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-----------H---HHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH-----------H---HHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC
Confidence 788888999999999988885432 1 1111222222335566677777777 6666666655421
Q ss_pred CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038112 427 KGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLE 461 (625)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 461 (625)
.+.....+..+...|...|++++|...+++..+
T Consensus 335 --~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 335 --YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111223555667777777777777777776654
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.54 E-value=3.3e-12 Score=118.00 Aligned_cols=219 Identities=10% Similarity=-0.002 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHH-------hcCCh-------hhHHHHHHHHHhCCCCCCchhhHHHHHHHHh
Q 038112 117 EKAKRFLNSLWEKGLKPDVYSYGTVINGLV-------KSGDL-------LGALAVFDEMFERGVETNVVCYNILIDGFFK 182 (625)
Q Consensus 117 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (625)
++|...|++++... |.++..|..++..+. +.|++ ++|..+|++.++.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45556666666543 456667777776665 34775 7888888888873123355678888888888
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCcc-hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCHHHH
Q 038112 183 KGDYMRAKEIWERLVMETSVYPNVV-TYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLC-KAGNVEGA 260 (625)
Q Consensus 183 ~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 260 (625)
.|++++|.++|+++.+.. +.+.. +|..++..+.+.|++++|..+|++..+..+ .+...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888742 22333 688888888888888888888888876543 34444443333322 26888888
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-cHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 038112 261 ERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRK---GCL-NVVSYNILIRGLLENGKVDEAISIWELL 336 (625)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 336 (625)
..+|+..++..+. +...+..++..+.+.|++++|..+|+..... .|. ....|..++......|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888887765332 5677777777788888888888888888775 222 5667777777777788888888888877
Q ss_pred HHcC
Q 038112 337 REKN 340 (625)
Q Consensus 337 ~~~~ 340 (625)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7764
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.52 E-value=6.5e-13 Score=130.35 Aligned_cols=213 Identities=10% Similarity=0.005 Sum_probs=186.2
Q ss_pred ChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHH
Q 038112 150 DLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDY-MRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEM 228 (625)
Q Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 228 (625)
.++.++..++..... .+.+...+..++.++...|++ ++|++.|++..+.. +.+..+|..+..+|...|++++|+..
T Consensus 83 ~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 356677777776655 344778899999999999999 99999999998874 45678899999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc--------CC
Q 038112 229 WDRMKKNEREKDSFTYCSFIHGLCKA---------GNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA--------GK 291 (625)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~ 291 (625)
|++..+.. |+...+..+...+... |++++|+..|++.++..+. +...+..+..+|... |+
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccch
Confidence 99999875 5578899999999999 9999999999999987543 788999999999998 99
Q ss_pred HHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 038112 292 IKECFELWEVMGRKGC---LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQIL 368 (625)
Q Consensus 292 ~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 368 (625)
+++|++.|+.+....| .+..+|..+..++...|++++|...|++..+..+. +...+..+...+...|++++|...+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988 89999999999999999999999999999988544 5667888888888889888888765
Q ss_pred H
Q 038112 369 N 369 (625)
Q Consensus 369 ~ 369 (625)
.
T Consensus 316 ~ 316 (474)
T 4abn_A 316 G 316 (474)
T ss_dssp T
T ss_pred c
Confidence 4
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=4.5e-14 Score=131.34 Aligned_cols=257 Identities=10% Similarity=-0.008 Sum_probs=160.9
Q ss_pred CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCc
Q 038112 35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQ-------KCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEA 107 (625)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 107 (625)
|....++..++..+...|++++|...++++++. ..+....++..++.++...|++++|...++++..
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------ 97 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA------ 97 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------
Confidence 666788899999999999999999999999984 3344556788899999999999999999987743
Q ss_pred chhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCC------C-CCCchhhHHHHHHH
Q 038112 108 GILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERG------V-ETNVVCYNILIDGF 180 (625)
Q Consensus 108 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~~~l~~~~ 180 (625)
+++.....+.+....++..+...+...|++++|...++++.+.. . +.....+..++.++
T Consensus 98 --------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 163 (311)
T 3nf1_A 98 --------------IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLC 163 (311)
T ss_dssp --------------HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred --------------HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 22333222223345678888888899999999999998887641 1 22345677778888
Q ss_pred HhcCChhHHHHHHHHHHhC------CCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCC-------CCCChhhHHHH
Q 038112 181 FKKGDYMRAKEIWERLVME------TSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNE-------REKDSFTYCSF 247 (625)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~l 247 (625)
...|++++|++.++++.+. +..+....++..+..++...|++++|...++++.... ..+.......
T Consensus 164 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~- 242 (311)
T 3nf1_A 164 QNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM- 242 (311)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-
Confidence 8888888888888877654 1112223456667777777777777777777766421 0011110000
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHH
Q 038112 248 IHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVD 327 (625)
Q Consensus 248 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 327 (625)
....+..+...+...+.+.++...+.......+....++..++.++...|+++
T Consensus 243 ---------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 295 (311)
T 3nf1_A 243 ---------------------------HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFE 295 (311)
T ss_dssp ---------------------------HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHH
T ss_pred ---------------------------HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHH
Confidence 11112222333344455555555666655555556666666777777777777
Q ss_pred HHHHHHHHHHHc
Q 038112 328 EAISIWELLREK 339 (625)
Q Consensus 328 ~a~~~~~~~~~~ 339 (625)
+|...+++..+.
T Consensus 296 ~A~~~~~~al~l 307 (311)
T 3nf1_A 296 AAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777666543
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.50 E-value=1.2e-11 Score=118.03 Aligned_cols=62 Identities=21% Similarity=0.090 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC----CchhhHHHHHHHHhcCChhHHHHHHHHHHh
Q 038112 137 SYGTVINGLVKSGDLLGALAVFDEMFERGVET----NVVCYNILIDGFFKKGDYMRAKEIWERLVM 198 (625)
Q Consensus 137 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 198 (625)
.+..+...+...|++++|...+++..+..... ...++..+...+...|++++|...+++...
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555666666666665555432111 112344455555555566555555555443
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=4.1e-13 Score=124.84 Aligned_cols=178 Identities=16% Similarity=0.084 Sum_probs=114.7
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH
Q 038112 308 LNVVSYNILIRGLLENGKVDEAISIWELLREK-------NCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLA 380 (625)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 380 (625)
....++..++..+...|++++|..+++++.+. ........+..+...+...|++++|...++++.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------- 96 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL-------- 96 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------
Confidence 35667777777788888888888887777663 222245566778888888999999998888533
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCChhhHHHHHHHHhccCCHHHHH
Q 038112 381 DAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRK------GC-SPTVVSYNTLINGLCKVERFGEAY 453 (625)
Q Consensus 381 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~ 453 (625)
.+.........+....++..+...|...|++++|...|+++.+. +. +.....+..+...+...|++++|.
T Consensus 97 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 173 (311)
T 3nf1_A 97 ---AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE 173 (311)
T ss_dssp ---HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred ---HHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 22222222223445667788888888899999999888887653 11 112335666666777777777777
Q ss_pred HHHHHHHHC------CCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 038112 454 SFVKEMLEK------GWKP-DMITYSLLINGLCQSKKIDMALKLCCQFLQ 496 (625)
Q Consensus 454 ~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 496 (625)
.+++++.+. +..| ...++..+...+...|++++|...++++.+
T Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777766653 1112 123455556666666666666666666554
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.47 E-value=2.3e-11 Score=116.16 Aligned_cols=238 Identities=8% Similarity=-0.005 Sum_probs=134.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHH
Q 038112 312 SYNILIRGLLENGKVDEAISIWELLREKNCN-A----DSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLV 386 (625)
Q Consensus 312 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~ 386 (625)
.+...+..+...|++++|+..+++....... + ....+..+...+...|+++.|...+.+... +
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~-----------~- 170 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD-----------I- 170 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------H-
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-----------H-
Confidence 3445566677888888888888887754211 1 234566777888889999999888885432 1
Q ss_pred HHHhhCCC-C-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CC-CChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038112 387 NRMDKHGC-K-LNAYTCNSLMNGFIQASKLENAIFLFKEMSRKG----CS-PTVVSYNTLINGLCKVERFGEAYSFVKEM 459 (625)
Q Consensus 387 ~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 459 (625)
....+. . ....+++.+...|...|++++|...|++..+.. .. ....++..+..+|...|++++|...+++.
T Consensus 171 --~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 171 --YQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp --HHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred --HHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 111111 1 134567778888888888888888888776521 01 01224555666666677777777776666
Q ss_pred HH-----CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHcCCC---HHHHHHHHH
Q 038112 460 LE-----KGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQK----GFTPDVTMYNILIHGLCSAGK---VEDALQLYS 527 (625)
Q Consensus 460 ~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~ 527 (625)
.+ .. +....++..+...+.+.|++++|...+++..+. +.+.....+..+...+...++ +.+|+.+++
T Consensus 249 l~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 249 AKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 55 21 112444555555666666666666666655542 111112233444444545555 444444444
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 528 NMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 528 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
+... .+.....+..++..|...|++++|...|+++++
T Consensus 328 ~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 328 KKNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3110 111133444555555555555555555555544
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.46 E-value=6.6e-12 Score=119.94 Aligned_cols=234 Identities=14% Similarity=0.015 Sum_probs=176.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038112 350 VLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHG-CKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKG 428 (625)
Q Consensus 350 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 428 (625)
.....+...|++++|...+++..... ...+ .+....++..+...|...|+++.|...+++..+..
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~--------------~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 171 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKEL--------------PFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY 171 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTG--------------GGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHH--------------hhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 34556788999999999999654321 1111 11235577889999999999999999999887531
Q ss_pred C-CC-----ChhhHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHh-
Q 038112 429 C-SP-----TVVSYNTLINGLCKVERFGEAYSFVKEMLEK----GWKP-DMITYSLLINGLCQSKKIDMALKLCCQFLQ- 496 (625)
Q Consensus 429 ~-~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 496 (625)
. .+ ...+++.+..+|...|++++|...+++..+. +..+ ...++..+...|...|++++|...+++.++
T Consensus 172 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 172 QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1 11 2346788899999999999999999988763 1111 134678889999999999999999999887
Q ss_pred ----CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHccCC---hhHHHHHHHHHH
Q 038112 497 ----KGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRN----CVPNLVTYNTLMDGLFKTGD---CDKALEIWNHIL 565 (625)
Q Consensus 497 ----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~ 565 (625)
.. +....++..++.++...|++++|..++++..+.. .+.....+..+...+...|+ +.+|+.++++.
T Consensus 252 ~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~- 329 (378)
T 3q15_A 252 SREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK- 329 (378)
T ss_dssp HHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-
T ss_pred HHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-
Confidence 43 3347788899999999999999999999998741 12224456777788888888 77777777762
Q ss_pred HcCCCCC-HHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 566 EERLRPD-IISYNITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 566 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
+..|+ ...+..++..|...|++++|.+.++++.+
T Consensus 330 --~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 330 --NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23333 35677888999999999999999999874
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.45 E-value=2.2e-12 Score=131.38 Aligned_cols=153 Identities=11% Similarity=-0.023 Sum_probs=110.1
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK 85 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (625)
..|+.++..+|++++|+..|+++++.+ |.++.++..++.++.+.|++++|++.|+++++.++ .+...+..++.+|..
T Consensus 13 ~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~l~~ 89 (723)
T 4gyw_A 13 NNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKE 89 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 568888999999999999999998887 88899999999999999999999999999998874 478888899999999
Q ss_pred cCCchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHH
Q 038112 86 NSMPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVF 158 (625)
Q Consensus 86 ~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 158 (625)
.|++++|++.|+++.+..|..+.+ +...|++++|+..|+++++.+ +.+...+..+..++...|++++|.+.+
T Consensus 90 ~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~~~ 168 (723)
T 4gyw_A 90 MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDERM 168 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHHHH
Confidence 999999988888887655544433 344455555555555544443 333444444555555555555554444
Q ss_pred HHHH
Q 038112 159 DEMF 162 (625)
Q Consensus 159 ~~~~ 162 (625)
+++.
T Consensus 169 ~kal 172 (723)
T 4gyw_A 169 KKLV 172 (723)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.43 E-value=1.7e-11 Score=107.75 Aligned_cols=208 Identities=11% Similarity=0.057 Sum_probs=155.8
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 038112 396 LNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLI 475 (625)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 475 (625)
.++..+......+...|++++|...|++..+....++...+..+..++...|++++|+..+++.++.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678888899999999999999999999887654677777778889999999999999999999852 33456788889
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 038112 476 NGLCQSKKIDMALKLCCQFLQKGFTPDV-------TMYNILIHGLCSAGKVEDALQLYSNMKKRNCVP--NLVTYNTLMD 546 (625)
Q Consensus 476 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 546 (625)
..+...|++++|...+++.++.. +.+. ..|..++.++...|++++|+..|+++.+.+ +. +...+..++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 99999999999999999998853 3344 557888888999999999999999999852 33 4677888888
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038112 547 GLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVR 616 (625)
Q Consensus 547 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 616 (625)
++...| ..+++++...+ ..+...+.... ....+.+++|+..+++.++. .|+......++.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l~ 221 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHH
Confidence 886544 34455655532 22334443332 33456689999999999873 466554444433
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.43 E-value=2e-10 Score=109.55 Aligned_cols=234 Identities=12% Similarity=-0.007 Sum_probs=129.4
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cC----HHHHHHHHH
Q 038112 214 NGLCKCGRFDECLEMWDRMKKNEREKDSF----TYCSFIHGLCKAGNVEGAERVYREMVESGIF-VD----AVTYNAMID 284 (625)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~ 284 (625)
..+...|++++|...+++.....+..+.. ++..+...+...|++++|...+++....... .+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445555666665555554433222211 2344455555666666666666665442100 01 123455666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----ChhhHHHHH
Q 038112 285 GFCRAGKIKECFELWEVMGRKG--------CLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNA----DSTTHGVLI 352 (625)
Q Consensus 285 ~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~ 352 (625)
.+...|++++|.+.++...... +....++..+...+...|++++|...+++........ ....+..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 6677777777777776655432 1134456667777788888888888887776653221 123456677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038112 353 NGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTC--NSLMNGFIQASKLENAIFLFKEMSRKGCS 430 (625)
Q Consensus 353 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 430 (625)
..+...|++++|...+++.... ....+.++..... ...+..+...|++++|...+++.......
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 247 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENL--------------LGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 247 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--------------HTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--------------HhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCC
Confidence 7788889999888888854321 1111111111111 12334467888888888888877654321
Q ss_pred CC---hhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038112 431 PT---VVSYNTLINGLCKVERFGEAYSFVKEMLE 461 (625)
Q Consensus 431 ~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 461 (625)
+. ...+..+...+...|++++|...+++...
T Consensus 248 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 248 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 11234455556666666666666665543
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.40 E-value=1.7e-11 Score=103.91 Aligned_cols=162 Identities=12% Similarity=-0.024 Sum_probs=135.8
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK 85 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (625)
..++.++...|++++|+..|+.++... |.++.++..++..+...|++++|...++.+++.. |.+..++..++..+..
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 456788889999999999999988876 8889999999999999999999999999999986 4578888889999998
Q ss_pred cCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 038112 86 NSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERG 165 (625)
Q Consensus 86 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 165 (625)
.|++++|...++++.... +.+...+..+...+...|++++|...++++.+..
T Consensus 89 ~~~~~~A~~~~~~~~~~~----------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 140 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN----------------------------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcCHHHHHHHHHHHHhcC----------------------------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Confidence 999999888888875432 3456677778888888889999998888888774
Q ss_pred CCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038112 166 VETNVVCYNILIDGFFKKGDYMRAKEIWERLVME 199 (625)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 199 (625)
+.+...+..++.++...|++++|...++.+.+.
T Consensus 141 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 141 -PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 336678888888888889999999888887764
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.39 E-value=3.4e-11 Score=105.88 Aligned_cols=197 Identities=12% Similarity=0.039 Sum_probs=143.4
Q ss_pred CCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHH
Q 038112 133 PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVM 212 (625)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 212 (625)
.|+..+......+...|++++|+..|+++++...+++...+..++.++...|++++|+..+++..+.. +.+..++..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHHH
Confidence 45677788888888888888888888888887654677777778888888888988888888888763 4456678888
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHH
Q 038112 213 INGLCKCGRFDECLEMWDRMKKNEREKDS-------FTYCSFIHGLCKAGNVEGAERVYREMVESGIFVD---AVTYNAM 282 (625)
Q Consensus 213 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 282 (625)
..++...|++++|+..+++..+..+ .+. ..|..+...+...|++++|+..|+++++. .|+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 8888888888888888888877643 244 45777778888888888998888888875 333 4666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 038112 283 IDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNC 341 (625)
Q Consensus 283 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 341 (625)
..+|...| ...++.+....+.+...+.... ....+.+++|+..+++..+..+
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHH-----HHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC
Confidence 77775544 3445555555444444443333 2334567888888888888743
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.39 E-value=8.9e-12 Score=126.99 Aligned_cols=165 Identities=13% Similarity=0.041 Sum_probs=98.3
Q ss_pred chhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHH
Q 038112 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIH 249 (625)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 249 (625)
..+++.++.++.+.|++++|++.|++.++.. +.+..++..+..++.+.|++++|+..|++..+..+ .+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 3455555555555566666665555555542 33344555555666666666666666665555432 24555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHH
Q 038112 250 GLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEA 329 (625)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 329 (625)
++...|++++|++.|++.++..+. +...+..+..+|...|++++|++.|++..+..|.+..++..++.++...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 666666666666666666654322 4556666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHH
Q 038112 330 ISIWELLRE 338 (625)
Q Consensus 330 ~~~~~~~~~ 338 (625)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=2.7e-11 Score=102.65 Aligned_cols=164 Identities=12% Similarity=0.038 Sum_probs=105.2
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 038112 172 CYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGL 251 (625)
Q Consensus 172 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 251 (625)
.+..++..+...|++++|...++.+.+.. +.+...+..++..+...|++++|...++++.+..+ .+...+..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 34455555666666666666666655432 33445556666666666666666666666655432 3455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHH
Q 038112 252 CKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAIS 331 (625)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 331 (625)
...|++++|...++++.+..+ .+...+..++.++...|++++|.+.++.+....+.+..++..++.++...|++++|..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 666777777777766665532 2556666677777777777777777777776666677777777777777777777777
Q ss_pred HHHHHHHc
Q 038112 332 IWELLREK 339 (625)
Q Consensus 332 ~~~~~~~~ 339 (625)
.++.+.+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 77776654
No 85
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.38 E-value=2.4e-09 Score=104.71 Aligned_cols=222 Identities=9% Similarity=-0.032 Sum_probs=136.2
Q ss_pred ccC-CchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-hhhHHHHHHHHH
Q 038112 85 KNS-MPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGD-LLGALAVFDEMF 162 (625)
Q Consensus 85 ~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~ 162 (625)
+.| +.+.|+.+|+.+...+|. |+++.+..+|++.+..- |++..|...+....+.++ .+....+|+.+.
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~--------~~~e~~~~iferal~~~--ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al 75 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS--------KDYRSLESLFGRCLKKS--YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTL 75 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHC----CTHHHHHHHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC--------CCHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 456 488899999998887775 78999999999999853 799999999988877763 456788888887
Q ss_pred hC-CCC-CCchhhHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 038112 163 ER-GVE-TNVVCYNILIDGFF----KKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNE 236 (625)
Q Consensus 163 ~~-~~~-~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 236 (625)
.. |.. .+...|...+..+. ..|+.+.+..+|++++..+ ...-...|......- ...+...+..++.+..
T Consensus 76 ~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P-~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~--- 150 (493)
T 2uy1_A 76 GQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP-MGSLSELWKDFENFE-LELNKITGKKIVGDTL--- 150 (493)
T ss_dssp HHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC-CTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHH---
T ss_pred HHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHH-HHhccccHHHHHHHHh---
Confidence 65 432 35567777766544 3467888999999998742 111111222222211 1111222222222211
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHhcCCCc
Q 038112 237 REKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAG--K-----IKECFELWEVMGRKGCLN 309 (625)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~ 309 (625)
+.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|+++....|.+
T Consensus 151 ------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~ 212 (493)
T 2uy1_A 151 ------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYA 212 (493)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCC
Confidence 123334444444332100013345555444432211 1 345677888888887788
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112 310 VVSYNILIRGLLENGKVDEAISIWELLREK 339 (625)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (625)
+..|...+..+...|+.+.|..++++....
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 999999999999999999999999999988
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.37 E-value=1.9e-11 Score=111.71 Aligned_cols=167 Identities=12% Similarity=0.074 Sum_probs=126.4
Q ss_pred HccCChhHHHHHHHhhccC------CCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhc-------CCCCHHHHHHH
Q 038112 13 KAEKNPHTALALFDSATRE------PGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQK-------CYCPEDVALSV 79 (625)
Q Consensus 13 ~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l 79 (625)
...|+++.|+..|+.+++. ...|....++..++..+...|++++|...++++++.. .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4678888999988888762 1235667888999999999999999999999998762 22345678889
Q ss_pred HHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHH
Q 038112 80 IQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFD 159 (625)
Q Consensus 80 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 159 (625)
+.++...|++++|...|+++.. ++++....+.+....++..+...+...|++++|...++
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~--------------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 151 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALE--------------------IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYR 151 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHH--------------------HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH--------------------HHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999988743 22232222222345678888888999999999999999
Q ss_pred HHHhC------C-CCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038112 160 EMFER------G-VETNVVCYNILIDGFFKKGDYMRAKEIWERLVME 199 (625)
Q Consensus 160 ~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 199 (625)
++.+. + .+....++..++.++...|++++|...++++.+.
T Consensus 152 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 152 RALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88765 1 1223456778888888999999999988887653
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.36 E-value=2.2e-11 Score=109.55 Aligned_cols=180 Identities=13% Similarity=0.055 Sum_probs=107.2
Q ss_pred HHHHHHHccCChhHHHHHHHhhccCCCCCCC---HHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCC--CCHHHHHHHHH
Q 038112 7 RLLNLLKAEKNPHTALALFDSATREPGYAHS---PHLFHHILRRLIDPKLVVHVSRILELIEIQKCY--CPEDVALSVIQ 81 (625)
Q Consensus 7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 81 (625)
.++..+..+|++++|+..|+.+++.. |.+ +.++..++.++.+.|++++|...|+.+++..|. .....+..++.
T Consensus 20 ~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~ 97 (261)
T 3qky_A 20 ERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAM 97 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHH
Confidence 44566667777777777777777655 444 667777777777777777777777777776542 12345666777
Q ss_pred HHHc--------cCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhh
Q 038112 82 AYGK--------NSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLG 153 (625)
Q Consensus 82 ~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 153 (625)
++.. .|++++|+..|+++...+|..+.+. .+...+..+... ....+..+...+.+.|++++
T Consensus 98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~-------~a~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 98 CYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD-------DATQKIRELRAK----LARKQYEAARLYERRELYEA 166 (261)
T ss_dssp HHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH-------HHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH-------HHHHHHHHHHHH----HHHHHHHHHHHHHHccCHHH
Confidence 7766 6777777777777666655544331 111111111110 01123455666667777777
Q ss_pred HHHHHHHHHhCCCCC--CchhhHHHHHHHHhc----------CChhHHHHHHHHHHhC
Q 038112 154 ALAVFDEMFERGVET--NVVCYNILIDGFFKK----------GDYMRAKEIWERLVME 199 (625)
Q Consensus 154 a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 199 (625)
|+..|+++++..+.. ....+..++.++... |++++|+..|+.+.+.
T Consensus 167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 777777776653221 123555666666654 6666777777766664
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.34 E-value=8.4e-12 Score=114.07 Aligned_cols=217 Identities=12% Similarity=0.019 Sum_probs=141.7
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC------C-CCCCchhhHHHHHHHHhcCChhHHHHHHH
Q 038112 122 FLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER------G-VETNVVCYNILIDGFFKKGDYMRAKEIWE 194 (625)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 194 (625)
+++++...+.+....++..+...+...|++++|+..++++.+. + .+....++..++.++...|++++|.+.++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 109 (283)
T 3edt_B 30 DLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCK 109 (283)
T ss_dssp HHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3444433332345677888999999999999999999998765 1 12235678889999999999999999999
Q ss_pred HHHhC------CCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhC------C-CCCChhhHHHHHHHHHhcCCHHHHH
Q 038112 195 RLVME------TSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKN------E-REKDSFTYCSFIHGLCKAGNVEGAE 261 (625)
Q Consensus 195 ~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~ 261 (625)
++... ...+....++..+...+...|++++|...+++.... . .+....++..+...+...|++++|.
T Consensus 110 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 189 (283)
T 3edt_B 110 RALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAE 189 (283)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88764 111234557888888999999999999999888754 1 1123456777888888899999999
Q ss_pred HHHHHHHHC-------CCCc-CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHH
Q 038112 262 RVYREMVES-------GIFV-DAVTYNAMIDGFCRAGK------IKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVD 327 (625)
Q Consensus 262 ~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 327 (625)
..++++++. ...+ ....+..+...+...+. +..+...++......+....++..++.++...|+++
T Consensus 190 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 269 (283)
T 3edt_B 190 TLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLE 269 (283)
T ss_dssp HHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHH
Confidence 988888753 1111 22233333333333222 233333333333233335667777888888888888
Q ss_pred HHHHHHHHHHH
Q 038112 328 EAISIWELLRE 338 (625)
Q Consensus 328 ~a~~~~~~~~~ 338 (625)
+|...+++..+
T Consensus 270 ~A~~~~~~al~ 280 (283)
T 3edt_B 270 AAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.33 E-value=3e-12 Score=103.58 Aligned_cols=147 Identities=11% Similarity=0.004 Sum_probs=117.6
Q ss_pred HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112 7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN 86 (625)
Q Consensus 7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (625)
.|+.++..+|++++|+..|+.+...+ |.++..+..++.+|.+.|++++|++.|+++++.+| .+..++..++.+|...
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELE 78 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 47888899999999999999998777 88888899999999999999999999999999974 5889999999999999
Q ss_pred CCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHH-HHHHHhCC
Q 038112 87 SMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAV-FDEMFERG 165 (625)
Q Consensus 87 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~ 165 (625)
|++++|+..|+++.+.. |.+..+|..+...+.+.|++++|... ++++.+..
T Consensus 79 ~~~~~A~~~~~~al~~~----------------------------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELN----------------------------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp TCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred CchHHHHHHHHHHHHhC----------------------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 99999999999885532 34567778888888888888776554 57777764
Q ss_pred CCCCchhhHHHHHHHHhcCC
Q 038112 166 VETNVVCYNILIDGFFKKGD 185 (625)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~g~ 185 (625)
+ -++.+|......+...|+
T Consensus 131 P-~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 131 P-GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp T-TCHHHHHHHHHHHHTCCC
T ss_pred c-CCHHHHHHHHHHHHHhCc
Confidence 3 366777777777777664
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.33 E-value=1.3e-10 Score=106.23 Aligned_cols=128 Identities=10% Similarity=-0.031 Sum_probs=60.5
Q ss_pred HHHHHHHHhcc-CCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH------
Q 038112 471 YSLLINGLCQS-KKIDMALKLCCQFLQKGFT-PD----VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNL------ 538 (625)
Q Consensus 471 ~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------ 538 (625)
+..+...|... |++++|+..+++.++.... .+ ..++..++.++...|++++|+..|+++.+.......
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 33444444443 5555555555554432100 00 234555566666666666666666666553211111
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHH------HHHHHHHHHh--hcCChHHHHHHHHHHH
Q 038112 539 VTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDII------SYNITLKGLC--SCSRMSDAFEFLNDAL 600 (625)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~~~ 600 (625)
..+..++.++...|++++|+..|+++++ +.|+.. .+..++.++. ..+++++|++.|+++.
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 1345556666666666666666666655 444321 2233334443 2345666666655543
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.31 E-value=1e-10 Score=106.87 Aligned_cols=167 Identities=11% Similarity=0.050 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc--C-CchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHC--
Q 038112 55 VHVSRILELIEIQKCYCPEDVALSVIQAYGKN--S-MPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEK-- 129 (625)
Q Consensus 55 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-- 129 (625)
.+|.+++.++.+.-.+ ....+ . +++. + ++++|...|+++. .++...|++++|...|++++..
T Consensus 2 ~~a~~~~~~a~k~~~~-~~~~~-~----~~~~~~~~~~~~A~~~~~~a~-------~~~~~~g~~~~A~~~~~~al~~~~ 68 (292)
T 1qqe_A 2 SDPVELLKRAEKKGVP-SSGFM-K----LFSGSDSYKFEEAADLCVQAA-------TIYRLRKELNLAGDSFLKAADYQK 68 (292)
T ss_dssp CCHHHHHHHHHHHSSC-CCTHH-H----HHSCCSHHHHHHHHHHHHHHH-------HHHHHTTCTHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhCc-CCCcc-h----hcCCCCCccHHHHHHHHHHHH-------HHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3577788888877432 21112 2 2233 2 5888888888873 2466778888888888877653
Q ss_pred --CCCC-CHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-C----chhhHHHHHHHHhc-CChhHHHHHHHHHHhCC
Q 038112 130 --GLKP-DVYSYGTVINGLVKSGDLLGALAVFDEMFERGVET-N----VVCYNILIDGFFKK-GDYMRAKEIWERLVMET 200 (625)
Q Consensus 130 --~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~ 200 (625)
+-++ ...+|+.+..++...|++++|+..|++.++..... + ..++..++.+|... |++++|+..|++..+..
T Consensus 69 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~ 148 (292)
T 1qqe_A 69 KAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY 148 (292)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 2111 13567777777777777777777777766541110 0 12444455555553 55555555555544421
Q ss_pred CCCCC----cchHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112 201 SVYPN----VVTYNVMINGLCKCGRFDECLEMWDRMKK 234 (625)
Q Consensus 201 ~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 234 (625)
....+ ..++..++..+.+.|++++|+..|++...
T Consensus 149 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 149 AQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 00000 12334444444444444444444444444
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.29 E-value=2.2e-09 Score=95.37 Aligned_cols=184 Identities=10% Similarity=0.038 Sum_probs=95.2
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCCchhhHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038112 121 RFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGV-ETNVVCYNILIDGFFKKGDYMRAKEIWERLVME 199 (625)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 199 (625)
..|++....+ +++..++..+..++...|++++|++++.+.+..+. .-+...+..++.++.+.|+.+.|.+.++.+.+.
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3344434333 34444445556666666666666666666655543 124455556666666666666666666666553
Q ss_pred CCCCC-----CcchHHHHHHH--HHhcC--ChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038112 200 TSVYP-----NVVTYNVMING--LCKCG--RFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVES 270 (625)
Q Consensus 200 ~~~~~-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 270 (625)
.| +..+...++.+ ....| ++.+|..+|+++.+.. |+..+...++.++.+.|++++|.+.++.+.+.
T Consensus 166 ---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 166 ---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred ---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23 12333333333 22223 6666666666665432 23222223333566666666666666654432
Q ss_pred C---------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 038112 271 G---------IFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVS 312 (625)
Q Consensus 271 ~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 312 (625)
- -+.++.++..++......|+ +|.++++++....|.++.+
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 0 01244555455544444554 5666666666665555443
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.28 E-value=1.7e-10 Score=103.82 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=81.2
Q ss_pred CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhh
Q 038112 35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCP---EDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILC 111 (625)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 111 (625)
+.++..+..++..+.+.|++++|...|+.+++..|. + ...+..++.++.+.|++++|+..|+++...+|..+.
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~--- 87 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR--- 87 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch---
Confidence 778899999999999999999999999999998643 4 678899999999999999999999999776554322
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh--------cCChhhHHHHHHHHHhC
Q 038112 112 RKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVK--------SGDLLGALAVFDEMFER 164 (625)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~ 164 (625)
...++..+..++.. .|++++|+..|+++++.
T Consensus 88 ----------------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 88 ----------------------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp ----------------------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred ----------------------hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 23344555555555 66666666666666665
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.26 E-value=4.2e-11 Score=103.18 Aligned_cols=99 Identities=5% Similarity=-0.018 Sum_probs=81.8
Q ss_pred HHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHH----------------HHHHhhCCCChhHHHHHHHHHHHhcCCC
Q 038112 8 LLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHH----------------ILRRLIDPKLVVHVSRILELIEIQKCYC 71 (625)
Q Consensus 8 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 71 (625)
.+..+...|++++|+..|+.+++.+ |.++.++.. ++.++.+.|++++|...|+.+++.+| .
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~ 86 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-N 86 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-C
Confidence 4567788999999999999998877 778888888 88888899999999999999998864 4
Q ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch
Q 038112 72 PEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI 109 (625)
Q Consensus 72 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 109 (625)
+...+..++.++...|++++|+..|+++.+..|..+.+
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a 124 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA 124 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 78888889988888888888888888886655544433
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.24 E-value=2.7e-09 Score=96.13 Aligned_cols=221 Identities=11% Similarity=0.003 Sum_probs=136.9
Q ss_pred hhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HccCCchH
Q 038112 18 PHTALALFDSATREPGYAHSPHLFHHILRRLIDPK--LVVHVSRILELIEIQKCYCPEDVALSVIQAY----GKNSMPDK 91 (625)
Q Consensus 18 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~ 91 (625)
.++|+..++.++..+ |....+|.....++...| +++++++.+..++..+|. +..+|+.-..++ ...+
T Consensus 49 s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~---- 121 (306)
T 3dra_A 49 SERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN---- 121 (306)
T ss_dssp SHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT----
T ss_pred CHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc----
Confidence 356777777666666 666666666666666666 677777777777766543 555555544444 3330
Q ss_pred HHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChh--hHHHHHHHHHhCCCCCC
Q 038112 92 ALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLL--GALAVFDEMFERGVETN 169 (625)
Q Consensus 92 A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~ 169 (625)
..+++++++.++++++..+ +.+..+|+.-..++.+.|.++ ++++.++++++.++. |
T Consensus 122 --------------------~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N 179 (306)
T 3dra_A 122 --------------------NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-N 179 (306)
T ss_dssp --------------------TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-C
T ss_pred --------------------ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-C
Confidence 0033444445555555544 445666666666666666666 777777777766543 5
Q ss_pred chhhHHHHHHHHhcCC------hhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhh-HHHHHHHHHhCC--CCCC
Q 038112 170 VVCYNILIDGFFKKGD------YMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDE-CLEMWDRMKKNE--REKD 240 (625)
Q Consensus 170 ~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~ 240 (625)
...|+.-..++...+. ++++++.++.++.. .+.|..+|+.+...+.+.|+... +..+.+++...+ ...+
T Consensus 180 ~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s 257 (306)
T 3dra_A 180 NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTS 257 (306)
T ss_dssp HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESC
T ss_pred HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCC
Confidence 5566666555555555 67777777777765 35666677777777777766444 444555554432 1245
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038112 241 SFTYCSFIHGLCKAGNVEGAERVYREMVE 269 (625)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 269 (625)
+..+..++..+.+.|+.++|.++++.+.+
T Consensus 258 ~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 258 SFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 66677777777777888888888888775
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.23 E-value=6.9e-11 Score=98.84 Aligned_cols=159 Identities=9% Similarity=0.037 Sum_probs=83.7
Q ss_pred HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHH-Hc
Q 038112 7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAY-GK 85 (625)
Q Consensus 7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~ 85 (625)
.++.++...|++++|+..|+.+++.+ |.++.++..++.++...|++++|...++.++...| ++.....++... ..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHh
Confidence 34555566666666666666666555 56666666666666666666666666666655543 333222221111 01
Q ss_pred cCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 038112 86 NSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERG 165 (625)
Q Consensus 86 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 165 (625)
.++. .+|+..|++++..+ |.+...+..+...+...|++++|...|+++.+..
T Consensus 87 ~~~~---------------------------~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 138 (176)
T 2r5s_A 87 QAAE---------------------------SPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVN 138 (176)
T ss_dssp HHTS---------------------------CHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hccc---------------------------chHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 1111 12333344444433 3345556666666666666666666666666554
Q ss_pred CCC-CchhhHHHHHHHHhcCChhHHHHHHHHHH
Q 038112 166 VET-NVVCYNILIDGFFKKGDYMRAKEIWERLV 197 (625)
Q Consensus 166 ~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 197 (625)
+.+ +...+..++.++...|+.++|...|++..
T Consensus 139 p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 139 LGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp TTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 322 23455556666666666666666665543
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.23 E-value=3.2e-10 Score=99.08 Aligned_cols=184 Identities=8% Similarity=-0.023 Sum_probs=128.8
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCC-CCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCH--HHHHHHHHH
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPG-YAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPE--DVALSVIQA 82 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~ 82 (625)
-.++..+..+|++++|+..|+.+++..+ .+..+.++..++.++.+.|++++|+..|+++++..|.... ..+..++.+
T Consensus 8 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~ 87 (225)
T 2yhc_A 8 YATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLT 87 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHH
Confidence 3467788899999999999999887652 2333578889999999999999999999999998754322 356667776
Q ss_pred HHc------------------cCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 038112 83 YGK------------------NSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVING 144 (625)
Q Consensus 83 ~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (625)
+.. .|++++|+..|+++.+.+|..+.+.. |...+..+... .......+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~-------a~~~l~~~~~~----~~~~~~~~a~~ 156 (225)
T 2yhc_A 88 NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD-------ATKRLVFLKDR----LAKYEYSVAEY 156 (225)
T ss_dssp HHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH-------HHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH-------HHHHHHHHHHH----HHHHHHHHHHH
Confidence 654 45566666666666555555443311 11111111100 01112345677
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCC--CchhhHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038112 145 LVKSGDLLGALAVFDEMFERGVET--NVVCYNILIDGFFKKGDYMRAKEIWERLVMET 200 (625)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 200 (625)
+.+.|++++|+..|+++++..+.. ....+..++.++.+.|++++|++.++.+...+
T Consensus 157 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 157 YTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 889999999999999999873221 12568889999999999999999999988764
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.23 E-value=1.4e-10 Score=119.24 Aligned_cols=167 Identities=9% Similarity=-0.011 Sum_probs=105.9
Q ss_pred hCCCChhHHHHHHHHHH--------HhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch-------hhhc
Q 038112 49 IDPKLVVHVSRILELIE--------IQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI-------LCRK 113 (625)
Q Consensus 49 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~ 113 (625)
...|++++|++.+++++ +.. |.+...+..++.++...|++++|+..|+++.+..|....+ +...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 45566666666666665 333 2345555556666666666666666666665555555444 4455
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHH
Q 038112 114 RQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIW 193 (625)
Q Consensus 114 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 193 (625)
|++++|+..|+++++.+ +.+...|..+..++.+.|++++ +..|+++.+.++. +...|..++.++.+.|++++|++.|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666666654 4456677777788888888888 8888888776433 6667788888888888888888888
Q ss_pred HHHHhCCCCCCCcchHHHHHHHHHhcCC
Q 038112 194 ERLVMETSVYPNVVTYNVMINGLCKCGR 221 (625)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 221 (625)
+++.+.. +.+..++..+..++...++
T Consensus 558 ~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HhhcccC--cccHHHHHHHHHHHHccCC
Confidence 8777653 3345566667766665444
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.22 E-value=6.1e-09 Score=92.54 Aligned_cols=172 Identities=9% Similarity=-0.019 Sum_probs=110.9
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-----CHh
Q 038112 396 LNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGC-SPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKP-----DMI 469 (625)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~ 469 (625)
++...+..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~ 175 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNE 175 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchH
Confidence 3444455677777788888888888887765543 124556677777788888888888888888763 45 245
Q ss_pred hHHHHHHHH--hccC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-----C----CCC
Q 038112 470 TYSLLINGL--CQSK--KIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKR-----N----CVP 536 (625)
Q Consensus 470 ~~~~l~~~~--~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~ 536 (625)
+...++.++ ...| ++..|..+|+++.+. .|+......+..++...|++++|...++.+.+. + -+.
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~ 253 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY 253 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence 555555553 2223 778888888887664 344223233333677788888888888765542 0 033
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHH
Q 038112 537 NLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIIS 575 (625)
Q Consensus 537 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 575 (625)
|+.++..++.+....|+ +|.++++++.+ ..|+...
T Consensus 254 ~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~ 288 (310)
T 3mv2_B 254 KPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHAF 288 (310)
T ss_dssp HHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHH
T ss_pred CHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChH
Confidence 56666566666666676 77788888877 6675543
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.22 E-value=1.1e-10 Score=97.71 Aligned_cols=128 Identities=13% Similarity=-0.001 Sum_probs=98.6
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHH-hhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRR-LIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYG 84 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (625)
..++.++..+|++++|+..|+.++... | ++..+...+.. +...+...+|...++.+++.+| .+...+..++.++.
T Consensus 44 ~~la~~~~~~g~~~~A~~~~~~a~~~~--p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~ 119 (176)
T 2r5s_A 44 LAKADCLLETKQFELAQELLATIPLEY--Q-DNSYKSLIAKLELHQQAAESPELKRLEQELAANP-DNFELACELAVQYN 119 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTCCGGG--C-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHhhhcc--C-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 567899999999999999999998877 6 66655544433 2233344568999999999874 58899999999999
Q ss_pred ccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112 85 KNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFE 163 (625)
Q Consensus 85 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 163 (625)
..|++++|+..|+++.+..|. ..+...+..+...+...|+.++|...|++.+.
T Consensus 120 ~~g~~~~A~~~~~~~l~~~p~--------------------------~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 120 QVGRDEEALELLWNILKVNLG--------------------------AQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HTTCHHHHHHHHHHHHTTCTT--------------------------TTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCcc--------------------------cChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999988543221 12345777888888888999888888887654
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.21 E-value=2.3e-09 Score=92.48 Aligned_cols=175 Identities=14% Similarity=0.032 Sum_probs=109.6
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccC----CHHHHHHHHH
Q 038112 417 AIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSK----KIDMALKLCC 492 (625)
Q Consensus 417 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~ 492 (625)
|.+.|++..+. .++..+..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|.+.|+
T Consensus 5 A~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 44555555554 255566666666666667777777777666643 44555556665655 4 6777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHc----cCChhHHHHHHHH
Q 038112 493 QFLQKGFTPDVTMYNILIHGLCS----AGKVEDALQLYSNMKKRNCV-PNLVTYNTLMDGLFK----TGDCDKALEIWNH 563 (625)
Q Consensus 493 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 563 (625)
+..+.| +...+..|..+|.. .+++++|+.+|++..+.+.. .++..+..|+..|.. .+++++|+.+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 776643 45566666666665 66777777777777765311 125666677777766 6677777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHhhc-C-----ChHHHHHHHHHHHHCC
Q 038112 564 ILEERLRPDIISYNITLKGLCSC-S-----RMSDAFEFLNDALCRG 603 (625)
Q Consensus 564 ~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 603 (625)
+.+. .++...+..+...|... | ++++|.+++++..+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7763 33445566666666543 2 6777777777777655
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.20 E-value=9.3e-10 Score=96.15 Aligned_cols=180 Identities=13% Similarity=0.092 Sum_probs=128.3
Q ss_pred CHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch---hh
Q 038112 37 SPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCP--EDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI---LC 111 (625)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~ 111 (625)
++..+..++..+.+.|++++|+..|+.+++..|..+ ...+..++.++.+.|++++|+..|+++.+.+|..+.+ +.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 467788899999999999999999999999865432 4688899999999999999999999999988887653 11
Q ss_pred -------------------------hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 038112 112 -------------------------RKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGV 166 (625)
Q Consensus 112 -------------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 166 (625)
..|++++|+..|++++... |.+..++....... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH-----
Confidence 1244555555555555443 22222221111000 000000
Q ss_pred CCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 038112 167 ETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNV---VTYNVMINGLCKCGRFDECLEMWDRMKKNER 237 (625)
Q Consensus 167 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 237 (625)
......++..+.+.|++++|+..|+.+.+.. |.+. .++..++.++.+.|++++|.+.++.+...++
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 0012456788999999999999999999863 2222 4688899999999999999999999988754
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.19 E-value=5.5e-10 Score=101.53 Aligned_cols=168 Identities=10% Similarity=-0.029 Sum_probs=113.5
Q ss_pred CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcC
Q 038112 35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKR 114 (625)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (625)
|.++..+..++..+.+.|++++|...|++++...| .+...+..++.++...|++++|...+++++...|
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p---------- 182 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ---------- 182 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC----------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc----------
Confidence 66778888888888899999999999999998874 4778888899999999999999998888755333
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhH-HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHH
Q 038112 115 QFEKAKRFLNSLWEKGLKPDVYS-YGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIW 193 (625)
Q Consensus 115 ~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 193 (625)
+... .......+...++.+.|+..+++..+.. |.+...+..++..+...|++++|+..|
T Consensus 183 -------------------~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l 242 (287)
T 3qou_A 183 -------------------DTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELL 242 (287)
T ss_dssp -------------------SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------------chHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 2221 2222223445556666666666666653 235566666666666777777777776
Q ss_pred HHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHH
Q 038112 194 ERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMK 233 (625)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 233 (625)
.++.+..+...+...+..++..+...|+.++|...+++..
T Consensus 243 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 243 FGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 6666653222224566666666666777776666666543
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.19 E-value=1.7e-09 Score=93.08 Aligned_cols=125 Identities=10% Similarity=0.057 Sum_probs=80.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 038112 282 MIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYL 361 (625)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 361 (625)
+..+|.+.|++++|+..|+......|.+..++..+..++...|++++|+..|+++.+..+. +...+..+...+...|..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHH
Confidence 7777788888888888888888887778888888888888888888888888888777543 556666666666544432
Q ss_pred H--HHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038112 362 N--KAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRK 427 (625)
Q Consensus 362 ~--~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 427 (625)
+ .+...+. ... ...|....+.....++...|++++|...|++..+.
T Consensus 139 ~~~~~~~~~~------------------~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 139 EKKKLETDYK------------------KLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHC-----------------------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHH------------------HHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2 2222222 111 12222233344455555667777777777777664
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.19 E-value=1.3e-10 Score=93.80 Aligned_cols=144 Identities=11% Similarity=-0.070 Sum_probs=77.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 038112 177 IDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGN 256 (625)
Q Consensus 177 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 256 (625)
+.++...|++++|++.++..... .+.+...+..+..+|.+.|++++|++.|++..+..+ .+..+|..+..++...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCc
Confidence 33444455566666666555443 122333445555666666666666666666555443 345556666666666666
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCcHHHHHHHHHHHHhCC
Q 038112 257 VEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFEL-WEVMGRKGCLNVVSYNILIRGLLENG 324 (625)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~ 324 (625)
+++|+..|++.++..+. +..++..+..+|.+.|+++++.+. ++.+.+..|.++.+|......+...|
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 66666666666554322 455555666666666665544433 35555555556666555555555444
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.18 E-value=4.7e-10 Score=115.23 Aligned_cols=174 Identities=10% Similarity=-0.018 Sum_probs=140.0
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038112 181 FKKGDYMRAKEIWERLV--------METSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLC 252 (625)
Q Consensus 181 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 252 (625)
...|++++|++.+++.. +. .+.+...+..+...+...|++++|+..|++..+..+ .+...|..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHH
Confidence 67899999999999887 43 345667788888899999999999999998887654 46778888889999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 038112 253 KAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISI 332 (625)
Q Consensus 253 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 332 (625)
..|++++|+..|+++++..+. +...+..+..++.+.|++++ ++.|+++.+.+|.+..+|..+..++...|++++|+..
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999887543 67888889999999999999 9999999998888999999999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038112 333 WELLREKNCNADSTTHGVLINGLCKNGY 360 (625)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 360 (625)
|+++.+.++. +...+..+..++...++
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 9888876432 34556666666655444
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.18 E-value=2.5e-08 Score=89.77 Aligned_cols=240 Identities=8% Similarity=-0.027 Sum_probs=185.0
Q ss_pred HHhhCCC-ChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC--CchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHH
Q 038112 46 RRLIDPK-LVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS--MPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRF 122 (625)
Q Consensus 46 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 122 (625)
.+..+.| ..++|+++++.++..+| .+..+++.-..++...| ++++++..++.+...+|...
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y--------------- 103 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY--------------- 103 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC---------------
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH---------------
Confidence 3333444 45689999999999975 47888888888888888 77777777777765544433
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHH----Hhc---CChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChh--HHHHHH
Q 038112 123 LNSLWEKGLKPDVYSYGTVINGL----VKS---GDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYM--RAKEIW 193 (625)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~ 193 (625)
.+|+.-...+ ... +++++++.+++++.+..++ +..+|..-.-++...|.++ ++++.+
T Consensus 104 -------------~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~ 169 (306)
T 3dra_A 104 -------------QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFV 169 (306)
T ss_dssp -------------HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 3344433333 333 7889999999999998544 7788888888888889888 999999
Q ss_pred HHHHhCCCCCCCcchHHHHHHHHHhcCC------hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHH
Q 038112 194 ERLVMETSVYPNVVTYNVMINGLCKCGR------FDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEG-AERVYRE 266 (625)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~ 266 (625)
+.+.+.+ +.|..+|+....++...+. ++++++.++++....+ .|...|+.+...+.+.|+... +.....+
T Consensus 170 ~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~ 246 (306)
T 3dra_A 170 DKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQ 246 (306)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred HHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 9999874 6788889888877877776 8999999999988775 588889888888888887444 5566666
Q ss_pred HHHCC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCcHHHHHHHHH
Q 038112 267 MVESG--IFVDAVTYNAMIDGFCRAGKIKECFELWEVMGR-KGCLNVVSYNILIR 318 (625)
Q Consensus 267 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~ 318 (625)
+.+.+ -..++..+..++.+|.+.|+.++|.++++.+.. .+|.....|+..+.
T Consensus 247 ~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 247 FVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp TEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 65533 134788899999999999999999999999987 57778888876654
No 108
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.17 E-value=1.3e-07 Score=92.46 Aligned_cols=196 Identities=9% Similarity=-0.051 Sum_probs=131.6
Q ss_pred HHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC----
Q 038112 388 RMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKG---- 463 (625)
Q Consensus 388 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 463 (625)
..... .+.++..|...+..+.+.|+.+.|..+|++.... +.+...|... ....+.++. ++.+.+.-
T Consensus 204 ~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y----~~~~e~~~~---~~~l~~~~~~~~ 273 (493)
T 2uy1_A 204 YILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYY----GLVMDEEAV---YGDLKRKYSMGE 273 (493)
T ss_dssp HHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHH----HHHTTCTHH---HHHHHHHTC---
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHH----HhhcchhHH---HHHHHHHHHhhc
Confidence 44443 2345778888888899999999999999999987 3333333322 221111122 22222210
Q ss_pred -----CCC---CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhCCC
Q 038112 464 -----WKP---DMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAG-KVEDALQLYSNMKKRNC 534 (625)
Q Consensus 464 -----~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~ 534 (625)
..+ ....|...+....+.++.+.|..+|+++ .. ...+...|...+..-...+ +++.|..+|+...+. .
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~ 350 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-H 350 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-C
T ss_pred cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-C
Confidence 001 1244666666666788899999999999 42 2235556654443333333 699999999999986 3
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 535 VPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 535 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
+.++..+...+......|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++.+
T Consensus 351 ~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 351 PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4456667777888888999999999999973 2567777777777778999999999988874
No 109
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.13 E-value=3.5e-09 Score=83.95 Aligned_cols=129 Identities=17% Similarity=0.268 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 038112 209 YNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR 288 (625)
Q Consensus 209 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (625)
|..++..+...|++++|..+++++....+ .+...+..++..+...|++++|...++++...+. .+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHH
Confidence 44555556666666666666666554432 2445555566666666666666666666655432 245556666666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112 289 AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREK 339 (625)
Q Consensus 289 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (625)
.|++++|.+.++.+....+.+..++..++..+...|++++|...++.+...
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 666777766666666666666666666667777777777777776666654
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.13 E-value=6.8e-09 Score=89.49 Aligned_cols=175 Identities=11% Similarity=0.021 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcC----ChhHHHHHH
Q 038112 118 KAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKG----DYMRAKEIW 193 (625)
Q Consensus 118 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~ 193 (625)
+|+.+|++..+.+ ++.++..+...+...+++++|+..|++..+.| ++..+..+..+|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555566655543 55666666666666677777777777666653 44556666666655 4 666666666
Q ss_pred HHHHhCCCCCCCcchHHHHHHHHHh----cCChhhHHHHHHHHHhCCCC-CChhhHHHHHHHHHh----cCCHHHHHHHH
Q 038112 194 ERLVMETSVYPNVVTYNVMINGLCK----CGRFDECLEMWDRMKKNERE-KDSFTYCSFIHGLCK----AGNVEGAERVY 264 (625)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~ 264 (625)
++..+.+ +..++..+...|.. .+++++|+.+|++..+.+.. .++..+..|...|.. .+++++|+..|
T Consensus 77 ~~A~~~g----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 77 EKAVEAG----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHTT----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHCC----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 6665432 44455555555555 55666666666666544321 014455555555555 55566666666
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhc
Q 038112 265 REMVESGIFVDAVTYNAMIDGFCRA-G-----KIKECFELWEVMGRK 305 (625)
Q Consensus 265 ~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~ 305 (625)
++..+. ..+...+..+..+|... | ++++|..+|+.....
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 655554 11333444455554432 1 555555555555544
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.13 E-value=1.4e-09 Score=100.08 Aligned_cols=94 Identities=12% Similarity=0.005 Sum_probs=46.6
Q ss_pred CCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc-cCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHC
Q 038112 51 PKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK-NSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEK 129 (625)
Q Consensus 51 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 129 (625)
.|++.+|.++++++.+.... . +.+ .+++++|...|+++. .++...|++++|...|.++...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a~-------~~~~~~g~~~~A~~~~~~al~~ 65 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKAA-------VAFKNAKQLEQAKDAYLQEAEA 65 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHHH-------HHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHHH-------HHHHHcCCHHHHHHHHHHHHHH
Confidence 45666677777766665421 1 112 466666666666652 2344556666666666655432
Q ss_pred CC---CC--CHhHHHHHHHHHHhcCChhhHHHHHHHHH
Q 038112 130 GL---KP--DVYSYGTVINGLVKSGDLLGALAVFDEMF 162 (625)
Q Consensus 130 ~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 162 (625)
.. .+ -..+|+.+...+...|++++|+..|++..
T Consensus 66 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 103 (307)
T 2ifu_A 66 HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS 103 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 10 00 02234444444444444444444444443
No 112
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.12 E-value=3.3e-09 Score=84.09 Aligned_cols=127 Identities=19% Similarity=0.281 Sum_probs=70.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 038112 471 YSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK 550 (625)
Q Consensus 471 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 550 (625)
+..++..+...|++++|..+++++.+.+ +.+...+..++..+...|++++|..+++++...+ +.+...+..++.++..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3344445555555555555555555432 2244555555555555666666666666555542 3345555556666666
Q ss_pred cCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 551 TGDCDKALEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 551 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
.|++++|..+++++.+ ..| +...+..++..+.+.|++++|.+.++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666666655 223 345555555666666666666666666554
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.11 E-value=1.1e-09 Score=99.68 Aligned_cols=161 Identities=12% Similarity=-0.005 Sum_probs=73.4
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhh-HHHHHH
Q 038112 171 VCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFT-YCSFIH 249 (625)
Q Consensus 171 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~ 249 (625)
..+..++..+...|++++|...|+++.+.. |.+...+..+..++.+.|++++|...++++....+ +... ......
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~~~~~ 193 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHHHHHH
Confidence 334444444445555555555555444432 22334444444555555555555555544443321 2111 111112
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHhCCCHH
Q 038112 250 GLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLN--VVSYNILIRGLLENGKVD 327 (625)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~ 327 (625)
.+...++.++|+..+++.+...+. +...+..+...+...|++++|++.|..+.+..|.+ ..++..++..+...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 233344444445555554444322 44445555555555555555555555555544443 445555555555555555
Q ss_pred HHHHHHHHH
Q 038112 328 EAISIWELL 336 (625)
Q Consensus 328 ~a~~~~~~~ 336 (625)
+|...+++.
T Consensus 273 ~a~~~~r~a 281 (287)
T 3qou_A 273 ALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 555544443
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.09 E-value=1.1e-09 Score=110.63 Aligned_cols=147 Identities=11% Similarity=-0.032 Sum_probs=99.4
Q ss_pred cCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHH
Q 038112 15 EKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALD 94 (625)
Q Consensus 15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 94 (625)
+|++++|+..|+.+++.. |.++.++..++..+...|++++|.+.|+++++.++ .+...+..++.++...|++++|..
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 588999999999999887 88999999999999999999999999999999874 578899999999999999999999
Q ss_pred HHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc---CChhhHHHHHHHHHhC
Q 038112 95 VFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKS---GDLLGALAVFDEMFER 164 (625)
Q Consensus 95 ~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 164 (625)
.|+++.+..|..+.+ +...|++++|...|+++++.+ +.+...+..+...+... |+.++|...++++.+.
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999997766655443 555666666666666666554 34455566666666666 6666666666666655
Q ss_pred C
Q 038112 165 G 165 (625)
Q Consensus 165 ~ 165 (625)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
No 115
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.09 E-value=1.1e-09 Score=85.23 Aligned_cols=101 Identities=9% Similarity=-0.081 Sum_probs=85.4
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK 85 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (625)
..++..+.++|++++|+..|+.+++.+ |.++.++..++.++.+.|++++|+..++.+++.++ .+...+..++.++..
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHH
Confidence 457788888999999999999988887 88889999999999999999999999999998874 478888889999999
Q ss_pred cCCchHHHHHHHHhHHhhCCCcch
Q 038112 86 NSMPDKALDVFQRMNEIFGCEAGI 109 (625)
Q Consensus 86 ~~~~~~A~~~~~~~~~~~~~~~~~ 109 (625)
.|++++|+..|+++.+..|..+.+
T Consensus 94 ~~~~~~A~~~~~~al~l~P~~~~a 117 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDPSNEEA 117 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHH
Confidence 999999999998887766655443
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.04 E-value=2.2e-09 Score=98.81 Aligned_cols=228 Identities=5% Similarity=-0.056 Sum_probs=147.7
Q ss_pred ccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112 85 KNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER 164 (625)
Q Consensus 85 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 164 (625)
..|++++|.+++++..+..+.. .+...+++++|...|+++ +..+...|++++|...|.++.+.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~--~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~ 65 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS--FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEA 65 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC--SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc--ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHH
Confidence 3567778888888776655531 121157788888777765 33566778888888888777654
Q ss_pred CCCC-----CchhhHHHHHHHHhcCChhHHHHHHHHHHhCC---CCC-CCcchHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112 165 GVET-----NVVCYNILIDGFFKKGDYMRAKEIWERLVMET---SVY-PNVVTYNVMINGLCKCGRFDECLEMWDRMKKN 235 (625)
Q Consensus 165 ~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 235 (625)
.... -..+|..++.+|...|++++|+..|++..+.. +.+ ....++..+..+|.. |++++|+..|++....
T Consensus 66 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~ 144 (307)
T 2ifu_A 66 HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV 144 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 2111 13467778888888888888888887765431 011 123567777778877 8888888888877643
Q ss_pred CCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038112 236 EREK-----DSFTYCSFIHGLCKAGNVEGAERVYREMVES----GIFVD-AVTYNAMIDGFCRAGKIKECFELWEVMGRK 305 (625)
Q Consensus 236 ~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 305 (625)
.... ...++..+...+...|++++|+..|++.+.. +..+. ...+..++.++...|++++|...|++.. .
T Consensus 145 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~ 223 (307)
T 2ifu_A 145 FENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S 223 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T
T ss_pred HHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C
Confidence 2111 1346777888888888888888888887763 11111 2356667777778888888888888887 6
Q ss_pred CCCc-----HHHHHHHHHHHHhCCCHHHHHHH
Q 038112 306 GCLN-----VVSYNILIRGLLENGKVDEAISI 332 (625)
Q Consensus 306 ~~~~-----~~~~~~l~~~~~~~~~~~~a~~~ 332 (625)
.|.. ......++..+ ..|+.+....+
T Consensus 224 ~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 224 IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 5531 12344455544 56776666553
No 117
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.02 E-value=1.7e-09 Score=86.53 Aligned_cols=104 Identities=10% Similarity=0.039 Sum_probs=78.9
Q ss_pred HHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhh
Q 038112 24 LFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIF 103 (625)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 103 (625)
.|+.++..+ |.++.++..++..+.+.|++++|...|+.++..+| .+...+..++.+|...|++++|+..|+++....
T Consensus 24 ~l~~al~l~--p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 24 TLKDINAIP--DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp CTGGGCCSC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CHHHHhCCC--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 345555555 77777778888888888888888888888887763 477777888888888888888888888887777
Q ss_pred CCCcch-------hhhcCChHHHHHHHHHHHHCC
Q 038112 104 GCEAGI-------LCRKRQFEKAKRFLNSLWEKG 130 (625)
Q Consensus 104 ~~~~~~-------~~~~~~~~~A~~~~~~~~~~~ 130 (625)
|..+.+ +...|++++|+..|++++...
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 777766 667788888888888877764
No 118
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.00 E-value=5.8e-10 Score=89.32 Aligned_cols=96 Identities=7% Similarity=-0.122 Sum_probs=69.9
Q ss_pred HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112 7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN 86 (625)
Q Consensus 7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (625)
.++.++..+|++++|+..|+.++..+ |.++.+|..++.++...|++++|...|+++++.+| .++..+..++.+|...
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~~~~l 117 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQCQLRL 117 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHc
Confidence 45666777777777777777777766 77777777777777777777777777777777764 3666777777777777
Q ss_pred CCchHHHHHHHHhHHhhCC
Q 038112 87 SMPDKALDVFQRMNEIFGC 105 (625)
Q Consensus 87 ~~~~~A~~~~~~~~~~~~~ 105 (625)
|++++|+..|+++....|.
T Consensus 118 g~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 118 KAPLKAKECFELVIQHSND 136 (151)
T ss_dssp TCHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 7777777777777665543
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.99 E-value=6e-08 Score=88.13 Aligned_cols=227 Identities=10% Similarity=0.004 Sum_probs=123.8
Q ss_pred HHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc-C
Q 038112 10 NLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPK-LVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN-S 87 (625)
Q Consensus 10 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 87 (625)
.++...+..++|+..++.++..+ |.+..+|.....++...| .++++++.++.++..+| .+..+|+.-..++... +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcC
Confidence 34445555567777777777776 777777777777776666 47777777777777764 3667777666666555 5
Q ss_pred -CchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChh--------hHHHHH
Q 038112 88 -MPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLL--------GALAVF 158 (625)
Q Consensus 88 -~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~ 158 (625)
++++++..++++....|.+..+ |+.-..++.+.+.++ ++++.+
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~A----------------------------W~~R~wvl~~l~~~~~~~~~~~~eELe~~ 190 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHT----------------------------WAYLHWLYSHFSTLGRISEAQWGSELDWC 190 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHH----------------------------HHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCCCHHH----------------------------HHHHHHHHHHhccccccchhhHHHHHHHH
Confidence 6666666666665554444444 333333333333333 445555
Q ss_pred HHHHhCCCCCCchhhHHHHHHHHhcCC-------hhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCCh---------
Q 038112 159 DEMFERGVETNVVCYNILIDGFFKKGD-------YMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRF--------- 222 (625)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------- 222 (625)
+++++.++. |...|+....++.+.+. ++++++.+++.+.. .+.|..+|+.+-..+.+.|..
T Consensus 191 ~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~ 267 (349)
T 3q7a_A 191 NEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAIL 267 (349)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHG
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCccccccccc
Confidence 555544322 44444444444444443 34555555554443 233444454444444443332
Q ss_pred -----------hhHHHHHHHHHhCC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038112 223 -----------DECLEMWDRMKKNE-----REKDSFTYCSFIHGLCKAGNVEGAERVYREMVES 270 (625)
Q Consensus 223 -----------~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 270 (625)
....+....+.... ..+++.....++..|...|+.++|.++++.+.+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 268 PYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp GGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22222222222211 1245666677777777777778888888777644
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.98 E-value=3.1e-09 Score=96.20 Aligned_cols=186 Identities=11% Similarity=-0.062 Sum_probs=126.2
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK 85 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (625)
..++..+..+|++++|+..|+.++... |.++.++..++.++.+.|++++|...++.+++.+ |.+...+..++.++..
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 8 KEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 567889999999999999999999887 8899999999999999999999999999999986 4588899999999999
Q ss_pred cCCchHHHHHHHHhHHhhCCCcchhh----hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHH
Q 038112 86 NSMPDKALDVFQRMNEIFGCEAGILC----RKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEM 161 (625)
Q Consensus 86 ~~~~~~A~~~~~~~~~~~~~~~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 161 (625)
.|++++|...|+++....|..+..+. .......+... ........+.+......+... ..|++++|++.++.+
T Consensus 85 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~a 161 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW-NSIEERRIHQESELHSYLTRL--IAAERERELEECQRN 161 (281)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGG
T ss_pred cCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhh
Confidence 99999999999998876664432211 11111111111 122222333444443333222 256667777776666
Q ss_pred HhCCCCCCchhhHHHHHHHHhc-CChhHHHHHHHHHHh
Q 038112 162 FERGVETNVVCYNILIDGFFKK-GDYMRAKEIWERLVM 198 (625)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 198 (625)
.+..+ .+......+...+.+. +.+++|.++|..+.+
T Consensus 162 l~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 162 HEGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp GTTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hcccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 65421 1233333333334333 556667777766554
No 121
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.98 E-value=1.3e-08 Score=102.93 Aligned_cols=165 Identities=13% Similarity=0.028 Sum_probs=120.2
Q ss_pred cCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHH
Q 038112 148 SGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLE 227 (625)
Q Consensus 148 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 227 (625)
.|++++|+..|+++.+.. +.+...+..++..+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 477888999999888764 3367788888899999999999999999988763 4566788888889999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 038112 228 MWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA---GKIKECFELWEVMGR 304 (625)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 304 (625)
.+++..+..+ .+...+..+...+...|++++|.+.|++..+.... +...+..+..++... |++++|.+.+++...
T Consensus 79 ~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998887654 46778888888999999999999999998886433 677888888888888 899999999999888
Q ss_pred cCCCcHHHHHHHH
Q 038112 305 KGCLNVVSYNILI 317 (625)
Q Consensus 305 ~~~~~~~~~~~l~ 317 (625)
.++.+...+..+.
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 8887766666554
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.95 E-value=1.8e-08 Score=78.17 Aligned_cols=95 Identities=21% Similarity=0.171 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 038112 504 TMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKG 582 (625)
Q Consensus 504 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 582 (625)
..+...+..|.+.|++++|+..|+++++.. +.+..+|..++.++...|++++|+..++++++ +.| +...|..++.+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHHHH
Confidence 345555666666666666666666666542 33456666666666666666666666666666 444 34556666666
Q ss_pred HhhcCChHHHHHHHHHHHH
Q 038112 583 LCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~ 601 (625)
|...|++++|++.|++.++
T Consensus 91 ~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6666666666666666664
No 123
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.95 E-value=7.9e-09 Score=82.57 Aligned_cols=98 Identities=8% Similarity=-0.089 Sum_probs=69.6
Q ss_pred HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112 7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN 86 (625)
Q Consensus 7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (625)
.++..+..+|++++|+..|+.++..+ |.++..|..++.++...|++++|...|+.++..+| .++..+..++.++...
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHc
Confidence 35566677777777777777777666 67777777777777777777777777777777753 4666677777777777
Q ss_pred CCchHHHHHHHHhHHhhCCCc
Q 038112 87 SMPDKALDVFQRMNEIFGCEA 107 (625)
Q Consensus 87 ~~~~~A~~~~~~~~~~~~~~~ 107 (625)
|++++|+..|+++....|..+
T Consensus 100 g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 100 GDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp TCHHHHHHHHHHHHHHHHTCG
T ss_pred CCHHHHHHHHHHHHHhCCCCc
Confidence 777777777777766555444
No 124
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.95 E-value=6.5e-09 Score=83.48 Aligned_cols=98 Identities=6% Similarity=-0.107 Sum_probs=66.0
Q ss_pred HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112 7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN 86 (625)
Q Consensus 7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (625)
.++.++..+|++++|+..|+.++..+ |.++.+|..++.++...|++++|+..|+.++..+| .+...+..++.+|...
T Consensus 26 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 26 SLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 35566667777777777777766666 66677777777777777777777777777776653 3556666677777777
Q ss_pred CCchHHHHHHHHhHHhhCCCc
Q 038112 87 SMPDKALDVFQRMNEIFGCEA 107 (625)
Q Consensus 87 ~~~~~A~~~~~~~~~~~~~~~ 107 (625)
|++++|+..|+++....|..+
T Consensus 103 g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 103 GELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp TCHHHHHHHHHHHHHHHTTCG
T ss_pred CCHHHHHHHHHHHHHHCcCCC
Confidence 777777777776666555443
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.95 E-value=1.7e-07 Score=85.57 Aligned_cols=166 Identities=13% Similarity=0.085 Sum_probs=123.7
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-----hhHHHHHHHHhccCCHHHHHHHHHHHHhCCC---CCC--HH
Q 038112 435 SYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM-----ITYSLLINGLCQSKKIDMALKLCCQFLQKGF---TPD--VT 504 (625)
Q Consensus 435 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~--~~ 504 (625)
.+...+..+...|++++|...+.+..+....... ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455666778889999999999888775322111 2234456667788999999999999886321 122 55
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHcC----CCC-CH
Q 038112 505 MYNILIHGLCSAGKVEDALQLYSNMKKR--NCVPN----LVTYNTLMDGLFKTGDCDKALEIWNHILEER----LRP-DI 573 (625)
Q Consensus 505 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~ 573 (625)
+++.++..|...|++++|..+++++.+. ..+.+ ..++..++.+|...|++++|+.+++++++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 8889999999999999999999998732 01111 2588999999999999999999999988721 111 15
Q ss_pred HHHHHHHHHHhhcCChHHH-HHHHHHHH
Q 038112 574 ISYNITLKGLCSCSRMSDA-FEFLNDAL 600 (625)
Q Consensus 574 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 600 (625)
.++..++.+|.+.|++++| ...+++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788899999999999999 77788775
No 126
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.94 E-value=2.3e-09 Score=93.90 Aligned_cols=190 Identities=6% Similarity=-0.099 Sum_probs=116.3
Q ss_pred ccCChhHHHHHHHhhccCCCCCCCHHHHHHH-------HHHhhCCCChhHHHHHHHHHHHhcCC----------------
Q 038112 14 AEKNPHTALALFDSATREPGYAHSPHLFHHI-------LRRLIDPKLVVHVSRILELIEIQKCY---------------- 70 (625)
Q Consensus 14 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~---------------- 70 (625)
..++++.|...|..+.+.+ |....+|..+ +.++.+.++..++...+...+...+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 5788889999999888888 8888888888 67777777777777777777663210
Q ss_pred ----CCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 038112 71 ----CPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLV 146 (625)
Q Consensus 71 ----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (625)
...++...++.++...|++++|.++|+.+... + |+......+...+.
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---------------------------~--p~~~~~~~~a~l~~ 146 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---------------------------G--SEHLVAWMKAVVYG 146 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---------------------------T--CHHHHHHHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------------------C--CchHHHHHHHHHHH
Confidence 01345556667777777777777777766332 2 22224444444566
Q ss_pred hcCChhhHHHHHHHHHhCCCCC--CchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHhcCCh
Q 038112 147 KSGDLLGALAVFDEMFERGVET--NVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPN--VVTYNVMINGLCKCGRF 222 (625)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~ 222 (625)
+.+++++|+..|+...... .| ....+..+..++...|++++|+..|++..... ..|. .........++.+.|+.
T Consensus 147 ~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~lGr~ 224 (282)
T 4f3v_A 147 AAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRSQGNE 224 (282)
T ss_dssp HTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHHHTCH
T ss_pred HcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHHcCCH
Confidence 6666666666666443321 11 02345566666666666666666666665321 2132 22445555666666666
Q ss_pred hhHHHHHHHHHhCC
Q 038112 223 DECLEMWDRMKKNE 236 (625)
Q Consensus 223 ~~a~~~~~~~~~~~ 236 (625)
++|..+|+++....
T Consensus 225 deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 225 SAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcC
Confidence 66666666666553
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.93 E-value=6.6e-08 Score=83.65 Aligned_cols=131 Identities=11% Similarity=-0.091 Sum_probs=94.9
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038112 435 SYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLC 514 (625)
Q Consensus 435 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 514 (625)
.+..+...+...|++++|...+++.. .|+...+..+...+...|++++|...+++.++.. +.+...+..++.+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34455666777788888888777663 4566777777778888888888888888777753 345677777788888
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH
Q 038112 515 SAGKVEDALQLYSNMKKRNCVPNL----------------VTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI 573 (625)
Q Consensus 515 ~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 573 (625)
..|++++|...|+++.+.. +.+. ..+..++.++...|++++|...|+++++ +.|+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~ 154 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSEP 154 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSG
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCccc
Confidence 8888888888888877752 2222 6777778888888888888888888777 55643
No 128
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.92 E-value=5.3e-07 Score=81.96 Aligned_cols=241 Identities=7% Similarity=-0.050 Sum_probs=172.0
Q ss_pred HHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC-CchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHH
Q 038112 46 RRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS-MPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLN 124 (625)
Q Consensus 46 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 124 (625)
..+......++|+++++.++..+| .+..+++.-..++...| ++++++..++.+
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~------------------------- 115 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEF------------------------- 115 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHH-------------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHH-------------------------
Confidence 344455566788888888888874 47777777777776666 355555555555
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhc-C-ChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChh--------HHHHHHH
Q 038112 125 SLWEKGLKPDVYSYGTVINGLVKS-G-DLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYM--------RAKEIWE 194 (625)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~ 194 (625)
+..+ +.+..+|+.-...+.+. + ++++++..++++.+..+. +..+|..-.-++.+.|.++ ++++.++
T Consensus 116 --L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~ 191 (349)
T 3q7a_A 116 --AVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCN 191 (349)
T ss_dssp --HHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred --HHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHH
Confidence 5544 45677777777777666 6 889999999999988544 6777777666666666666 8999999
Q ss_pred HHHhCCCCCCCcchHHHHHHHHHhcCC-------hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH----------
Q 038112 195 RLVMETSVYPNVVTYNVMINGLCKCGR-------FDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNV---------- 257 (625)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------- 257 (625)
++.+.. +.|..+|+....++.+.+. ++++++.+++.....+ .|...|+.+-..+.+.|..
T Consensus 192 k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~ 268 (349)
T 3q7a_A 192 EMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILP 268 (349)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGG
T ss_pred HHHHhC--CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccc
Confidence 998874 6788899998888888876 6899999999887765 4777887766666665543
Q ss_pred ----------HHHHHHHHHHHHCC-----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCcHHHHHHHHHH
Q 038112 258 ----------EGAERVYREMVESG-----IFVDAVTYNAMIDGFCRAGKIKECFELWEVMG-RKGCLNVVSYNILIRG 319 (625)
Q Consensus 258 ----------~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~l~~~ 319 (625)
........++...+ ..+++..+..++..|...|+.++|.++++.+. +.+|.....|...+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 269 YTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp GTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred cccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 33444444443322 13578889999999999999999999999997 4455577777766544
No 129
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.92 E-value=5.2e-09 Score=80.64 Aligned_cols=99 Identities=7% Similarity=-0.110 Sum_probs=86.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 038112 5 AKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYG 84 (625)
Q Consensus 5 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (625)
+-.++..+...|++++|+..|+.+++.+ |.++.++..++.++...|++++|+..|+++++.+| .+...+..++.++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 4567889999999999999999999988 89999999999999999999999999999999974 47889999999999
Q ss_pred ccCCchHHHHHHHHhHHhhCCC
Q 038112 85 KNSMPDKALDVFQRMNEIFGCE 106 (625)
Q Consensus 85 ~~~~~~~A~~~~~~~~~~~~~~ 106 (625)
..|++++|+..|+++.+..|..
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-----
T ss_pred HcCCHHHHHHHHHHHHHhCcCC
Confidence 9999999999999987765543
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.92 E-value=2.1e-07 Score=84.96 Aligned_cols=163 Identities=8% Similarity=-0.010 Sum_probs=99.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CC----hhhHHH
Q 038112 176 LIDGFFKKGDYMRAKEIWERLVMETSVYPNVV----TYNVMINGLCKCGRFDECLEMWDRMKKNERE-KD----SFTYCS 246 (625)
Q Consensus 176 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 246 (625)
.+..+...|++++|...++...+.....|+.. .+..+...+...|++++|+..+++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566777888888888877766432222211 2234556666667777887777777763222 22 124667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------cHHHHH
Q 038112 247 FIHGLCKAGNVEGAERVYREMVES-----GIFV-DAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL------NVVSYN 314 (625)
Q Consensus 247 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~ 314 (625)
+...|...|++++|+..|+++++. +..+ ...++..++.+|.+.|++++|++.+++.....+. -..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 777777777777777777777631 1111 1235666777777777777777777666543211 255667
Q ss_pred HHHHHHHhCCC-HHHHHHHHHHHHH
Q 038112 315 ILIRGLLENGK-VDEAISIWELLRE 338 (625)
Q Consensus 315 ~l~~~~~~~~~-~~~a~~~~~~~~~ 338 (625)
.++.++...|+ +++|...+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 77777777773 5777776666543
No 131
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.92 E-value=8.4e-08 Score=82.96 Aligned_cols=125 Identities=10% Similarity=-0.075 Sum_probs=69.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 038112 211 VMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAG 290 (625)
Q Consensus 211 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (625)
.+...+...|++++|+..|++.. .++...+..+...+...|++++|+..|++.++..+ .+...+..+..++...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcc
Confidence 34444555555555555555442 33445555555555555555555555555554432 24455555555555556
Q ss_pred CHHHHHHHHHHHHhcCCCcH----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 038112 291 KIKECFELWEVMGRKGCLNV----------------VSYNILIRGLLENGKVDEAISIWELLREKN 340 (625)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 340 (625)
++++|++.|+.+....+.+. .++..++.++...|++++|...|+......
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 66666665555555443332 666666666677777777777776666653
No 132
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.90 E-value=4.8e-07 Score=82.56 Aligned_cols=161 Identities=12% Similarity=0.024 Sum_probs=65.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCh----hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CC----HhhHHHH
Q 038112 405 MNGFIQASKLENAIFLFKEMSRKGC-SPTV----VSYNTLINGLCKVERFGEAYSFVKEMLEKGWK-PD----MITYSLL 474 (625)
Q Consensus 405 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 474 (625)
+..+...|++++|..++++...... .|+. ..+..+...+...+++++|+..++++.+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4445555666666666655554211 1110 01122333344444555555555555442111 11 1134444
Q ss_pred HHHHhccCCHHHHHHHHHHHHh----C-CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCC-HHHHHH
Q 038112 475 INGLCQSKKIDMALKLCCQFLQ----K-GFTP-DVTMYNILIHGLCSAGKVEDALQLYSNMKKR----NCVPN-LVTYNT 543 (625)
Q Consensus 475 ~~~~~~~~~~~~A~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~ 543 (625)
+..|...|++++|...++++++ . +..+ ...++..++.+|...|++++|..++++..+. +..+. ..++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 4444455555555554444442 0 0001 1123444444444444444444444444321 10111 334444
Q ss_pred HHHHHHccCC-hhHHHHHHHHHH
Q 038112 544 LMDGLFKTGD-CDKALEIWNHIL 565 (625)
Q Consensus 544 l~~~~~~~g~-~~~A~~~~~~~~ 565 (625)
++.++.+.|+ +++|.+.+++++
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 4444444442 344444444443
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.90 E-value=2.5e-08 Score=87.45 Aligned_cols=196 Identities=9% Similarity=-0.052 Sum_probs=119.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhHHHHH-------HHHHHhcCChhhHHHHHHHHHhCCCCCC----------------
Q 038112 113 KRQFEKAKRFLNSLWEKGLKPDVYSYGTV-------INGLVKSGDLLGALAVFDEMFERGVETN---------------- 169 (625)
Q Consensus 113 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------- 169 (625)
.+++..|+..|.++...+ |.....|..+ ..++.+.++..+++..+...... .|+
T Consensus 19 ~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCCE
T ss_pred CCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCcccccc
Confidence 355555555555555554 4456666666 45555555666666666655542 111
Q ss_pred ------chhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC--Ch
Q 038112 170 ------VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREK--DS 241 (625)
Q Consensus 170 ------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~ 241 (625)
......++..+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .| ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~---p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG---SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1123345566777888888888887776543 322255556667778888888888887554321 11 12
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 038112 242 FTYCSFIHGLCKAGNVEGAERVYREMVESGIFVD--AVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNIL 316 (625)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 316 (625)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....|. ..++..|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 3566677777778888888888877764332132 345566667777777777777777777776665 4444433
No 134
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.89 E-value=4.7e-08 Score=80.35 Aligned_cols=102 Identities=14% Similarity=-0.034 Sum_probs=89.7
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK 85 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (625)
..++.++...|++++|+..|+.+++.. |.++.++..++.++...|++++|+..|+.+++.++ .+...+..++.++..
T Consensus 15 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 15 KSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 467788889999999999999999887 88899999999999999999999999999999874 478899999999999
Q ss_pred cCCchHHHHHHHHhHHhhCCCcchh
Q 038112 86 NSMPDKALDVFQRMNEIFGCEAGIL 110 (625)
Q Consensus 86 ~~~~~~A~~~~~~~~~~~~~~~~~~ 110 (625)
.|++++|+..|+++....|..+.++
T Consensus 92 ~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred ccCHHHHHHHHHHHHHhCCCchHHH
Confidence 9999999999999988777766654
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.88 E-value=2.3e-08 Score=82.46 Aligned_cols=127 Identities=10% Similarity=-0.102 Sum_probs=93.0
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK 85 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (625)
..++..+..+|++++|+..|+.++... |.++.++..++.++...|++++|.+.++.+++..+ .+...+..++.++..
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Confidence 456677778888888888888888766 77788888888888888888888888888888763 467778888888888
Q ss_pred cCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHH--HHHHHHHHhcCChhhHHHHHHHHHh
Q 038112 86 NSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSY--GTVINGLVKSGDLLGALAVFDEMFE 163 (625)
Q Consensus 86 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~ 163 (625)
.|++++|...|+++....|. +...+ ...+..+...|++++|+..+.....
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~----------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPH----------------------------DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTT----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888877553332 33333 2333335667788888888776654
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.86 E-value=9.6e-09 Score=82.48 Aligned_cols=96 Identities=14% Similarity=-0.015 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038112 503 VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLK 581 (625)
Q Consensus 503 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 581 (625)
...+..++..+...|++++|...|+++...+ +.+...|..++.++...|++++|+..|+++++ +.| +...+..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHH
Confidence 3344445555555555555555555555431 33455555555555555555555555555555 334 3345555555
Q ss_pred HHhhcCChHHHHHHHHHHHH
Q 038112 582 GLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 582 ~~~~~g~~~~A~~~~~~~~~ 601 (625)
+|...|++++|.+.|++.++
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555543
No 137
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.85 E-value=9.4e-08 Score=78.76 Aligned_cols=128 Identities=12% Similarity=0.060 Sum_probs=99.0
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038112 469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGL 548 (625)
Q Consensus 469 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (625)
..+..+...+...|++++|...+++.++.. +.+...+..++.++...|++++|...+++..+.. +.+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 445666777788888888888888888753 3467788888888888999999999998888762 45678888888999
Q ss_pred HccCChhHHHHHHHHHHHcCCCC-CHHHHHH--HHHHHhhcCChHHHHHHHHHHH
Q 038112 549 FKTGDCDKALEIWNHILEERLRP-DIISYNI--TLKGLCSCSRMSDAFEFLNDAL 600 (625)
Q Consensus 549 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~ 600 (625)
...|++++|...++++++ ..| +...+.. .+..+...|++++|++.+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999888 455 4444433 3344777888999988888764
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.84 E-value=1.5e-08 Score=84.62 Aligned_cols=122 Identities=6% Similarity=0.071 Sum_probs=92.0
Q ss_pred HccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHccCCc--
Q 038112 13 KAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQA-YGKNSMP-- 89 (625)
Q Consensus 13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 89 (625)
..+|++++|+..|+.++... |.++.++..++.++...|++++|...|+.+++..+ .+...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcch
Confidence 45688889999999888877 88889999999999999999999999999998874 477788888888 7788887
Q ss_pred hHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 038112 90 DKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERG 165 (625)
Q Consensus 90 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 165 (625)
++|...|+++.... +.+...+..+...+...|++++|...|+++.+..
T Consensus 98 ~~A~~~~~~al~~~----------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALD----------------------------SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC----------------------------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888775433 3345566667777777777777777777777763
No 139
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.84 E-value=1.9e-08 Score=78.23 Aligned_cols=95 Identities=15% Similarity=0.058 Sum_probs=78.3
Q ss_pred HHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCC------HHHHHH
Q 038112 5 AKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCP------EDVALS 78 (625)
Q Consensus 5 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ 78 (625)
...|+.++..+|++++|+..|+.++..+ |.++.+|..++.++...|++++|++.++.+++.++... ..++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4678999999999999999999999887 88999999999999999999999999999988754221 235667
Q ss_pred HHHHHHccCCchHHHHHHHHhHH
Q 038112 79 VIQAYGKNSMPDKALDVFQRMNE 101 (625)
Q Consensus 79 l~~~~~~~~~~~~A~~~~~~~~~ 101 (625)
++.++...|++++|++.|++.+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 77778888888888888877654
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.84 E-value=2.8e-09 Score=99.22 Aligned_cols=151 Identities=11% Similarity=-0.017 Sum_probs=110.2
Q ss_pred CChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCC--------------HHHHHHHHH
Q 038112 16 KNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCP--------------EDVALSVIQ 81 (625)
Q Consensus 16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~ 81 (625)
+++++|+..|+.+.... |..+.++..++..+.+.|++++|...|++++...+... ..++..++.
T Consensus 127 ~~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 44556666666655544 66678888889999999999999999999998875432 467777888
Q ss_pred HHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHH
Q 038112 82 AYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEM 161 (625)
Q Consensus 82 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 161 (625)
+|.+.|++++|+..|+++.... +.+..+|..+..++...|++++|+..|+++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~----------------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 256 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD----------------------------SNNEKGLSRRGEAHLAVNDFELARADFQKV 256 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC----------------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888887777777775432 345667777778888888888888888888
Q ss_pred HhCCCCCCchhhHHHHHHHHhcCChhHH-HHHHHHHH
Q 038112 162 FERGVETNVVCYNILIDGFFKKGDYMRA-KEIWERLV 197 (625)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 197 (625)
++..+ .+...+..+..++...|++++| ...|..+.
T Consensus 257 l~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 257 LQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77743 3566777778888888888777 34555544
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.84 E-value=3e-08 Score=77.27 Aligned_cols=95 Identities=5% Similarity=-0.141 Sum_probs=87.1
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK 85 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (625)
..++..+..+|++++|+..|+.+++.. |.++.++..++.++.+.|++++|...++.+++.+| .+...+..++.++..
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 567888999999999999999999888 88999999999999999999999999999999974 578899999999999
Q ss_pred cCCchHHHHHHHHhHHhh
Q 038112 86 NSMPDKALDVFQRMNEIF 103 (625)
Q Consensus 86 ~~~~~~A~~~~~~~~~~~ 103 (625)
.|++++|...|+++....
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 999999999999987755
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.84 E-value=2.2e-08 Score=83.65 Aligned_cols=120 Identities=12% Similarity=0.169 Sum_probs=60.2
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcCCCH--H
Q 038112 444 CKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHG-LCSAGKV--E 520 (625)
Q Consensus 444 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 520 (625)
...|++++|...+++.++.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34455555555555555431 2344455555555555555555555555555432 2244455555555 4455555 5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 521 DALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 521 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
+|...++++.+.+ +.+...+..++.++...|++++|...|+++++
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 5555555555531 23345555555555555555555555555555
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.84 E-value=6.1e-07 Score=81.86 Aligned_cols=168 Identities=10% Similarity=-0.031 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-----hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC---CC--H
Q 038112 399 YTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTV-----VSYNTLINGLCKVERFGEAYSFVKEMLEKGWK---PD--M 468 (625)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~ 468 (625)
..+...+..+...|++++|...+.+..+....... ..+..+...+...|++++|+..+++..+.... +. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455677788999999999999888775322111 12344556677889999999999998864211 11 3
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC----CCC-C
Q 038112 469 ITYSLLINGLCQSKKIDMALKLCCQFLQ---K-GFTP--DVTMYNILIHGLCSAGKVEDALQLYSNMKKRN----CVP-N 537 (625)
Q Consensus 469 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~ 537 (625)
.+++.++..|...|++++|...++++.+ . +..+ ...++..++.+|...|++++|+.++++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4788899999999999999999999873 2 1111 12588899999999999999999999987531 111 1
Q ss_pred HHHHHHHHHHHHccCChhHH-HHHHHHHHH
Q 038112 538 LVTYNTLMDGLFKTGDCDKA-LEIWNHILE 566 (625)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 566 (625)
..++..++.+|...|++++| ...+++++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 67889999999999999999 787888775
No 144
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.82 E-value=6e-08 Score=75.40 Aligned_cols=106 Identities=11% Similarity=0.098 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC--------HHH
Q 038112 504 TMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD--------IIS 575 (625)
Q Consensus 504 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~~~ 575 (625)
..+..++..+.+.|++++|+..|+++++.. |.+...|..++.+|...|++++|+..++++++ +.|+ ..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE--VGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--hCcccchhhHHHHHH
Confidence 345556666667777777777777766642 33466666677777777777777777777665 2231 124
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 038112 576 YNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHIL 614 (625)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 614 (625)
+..+..++...|++++|++.|++.++ ..||+.+...+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 55566666677777777777777664 33555544433
No 145
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.80 E-value=4e-08 Score=88.82 Aligned_cols=197 Identities=12% Similarity=0.025 Sum_probs=128.4
Q ss_pred CCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHH
Q 038112 133 PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVM 212 (625)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 212 (625)
.+...+..+...+.+.|++++|+..|+++++..+ .+...|..++.++...|++++|+..++++.+.. +.+...+..+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 78 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 78 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 3456677778888888999999999888888743 367788888888888899999998888888763 4566778888
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 038112 213 INGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKI 292 (625)
Q Consensus 213 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (625)
+.++...|++++|+..|++..+..+. +...+...+....+ ..++.. +..........+......+... ..|++
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~ 151 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IAAER 151 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHH
Confidence 88888889999998888887654321 11111111111111 111111 1222223334444444444332 25788
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHc
Q 038112 293 KECFELWEVMGRKGCLNVVSYNILIRGLLEN-GKVDEAISIWELLREK 339 (625)
Q Consensus 293 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 339 (625)
++|++.++......|.+......+...+.+. +.++++.++|..+.+.
T Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 152 ERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8888888888777776666666666555555 5677788888776653
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.79 E-value=1.5e-07 Score=74.12 Aligned_cols=94 Identities=15% Similarity=0.104 Sum_probs=40.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 038112 471 YSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK 550 (625)
Q Consensus 471 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 550 (625)
+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|...++++.+. .+.+...+..++.++..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-EPTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHH
Confidence 3344444444444444444444444331 123344444444444444444444444444443 12234444444444444
Q ss_pred cCChhHHHHHHHHHHH
Q 038112 551 TGDCDKALEIWNHILE 566 (625)
Q Consensus 551 ~g~~~~A~~~~~~~~~ 566 (625)
.|++++|...++++++
T Consensus 97 ~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 97 MKDYTKAMDVYQKALD 112 (133)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHH
Confidence 4444444444444444
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.78 E-value=2.6e-08 Score=79.54 Aligned_cols=111 Identities=9% Similarity=-0.066 Sum_probs=86.2
Q ss_pred HHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHh
Q 038112 23 ALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEI 102 (625)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 102 (625)
..|+.++..+ |.+...+..++..+.+.|++++|...|+.++..+| .+...+..++.++...|++++|+..|+++...
T Consensus 5 ~~l~~al~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 5 GTLAMLRGLS--EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALM 81 (142)
T ss_dssp ----CCTTCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHcCC--HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4667777766 77888999999999999999999999999999974 58899999999999999999999999998664
Q ss_pred hCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112 103 FGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER 164 (625)
Q Consensus 103 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 164 (625)
.|. +...+..+..++...|++++|+..|+++.+.
T Consensus 82 ~p~----------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 82 DIN----------------------------EPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp CTT----------------------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCC----------------------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 443 4445556666666666777776666666655
No 148
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.78 E-value=9.9e-07 Score=79.84 Aligned_cols=220 Identities=10% Similarity=-0.025 Sum_probs=115.6
Q ss_pred ccCChh-HHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCC----------hhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 038112 14 AEKNPH-TALALFDSATREPGYAHSPHLFHHILRRLIDPKL----------VVHVSRILELIEIQKCYCPEDVALSVIQA 82 (625)
Q Consensus 14 ~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (625)
+.|.++ +|+..++.++..+ |.+..+|+....++...+. ++++...+..++..+| .+..+|..-..+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 344443 5666666666666 6666666655555443333 4566666666666653 356666665555
Q ss_pred HHccCC--chHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-hhhHHHHHH
Q 038112 83 YGKNSM--PDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGD-LLGALAVFD 159 (625)
Q Consensus 83 ~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~ 159 (625)
+...++ +++++.+++++.+.+|.+ ..+|+.-..++...|. ++++++.++
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprN----------------------------y~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERN----------------------------FHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTC----------------------------HHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCC----------------------------HHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 555553 455555555555544444 4444444444444444 244555555
Q ss_pred HHHhCCCCCCchhhHHHHHHHHhc--------------CChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhc------
Q 038112 160 EMFERGVETNVVCYNILIDGFFKK--------------GDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKC------ 219 (625)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 219 (625)
.+++.++. |...|+.....+... +.++++++.+...... .|.|..+|+.+-..+.+.
T Consensus 170 ~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 170 SLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCcccc
Confidence 55544322 344444433333332 3355666666666554 244555555443333333
Q ss_pred -----CChhhHHHHHHHHHhCCCCCChhhHHHHHH-----HHHhcCCHHHHHHHHHHHHHC
Q 038112 220 -----GRFDECLEMWDRMKKNEREKDSFTYCSFIH-----GLCKAGNVEGAERVYREMVES 270 (625)
Q Consensus 220 -----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~ 270 (625)
+.++++++.++++.+..+ +. .|+.+.. .....+..+++...+.++.+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~p--d~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEP--EN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCT--TC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCc--cc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 346677777777776543 32 2322211 112356677888888888775
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.77 E-value=1.7e-07 Score=73.00 Aligned_cols=95 Identities=18% Similarity=0.161 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 038112 504 TMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKG 582 (625)
Q Consensus 504 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 582 (625)
..+..++..+...|++++|+..|++..+.. +.+...+..++.++...|++++|+..++++++ +.| +...+..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 445555566666666666666666666542 33456666666666666666666666666666 444 34556666666
Q ss_pred HhhcCChHHHHHHHHHHHH
Q 038112 583 LCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~ 601 (625)
+...|++++|.+.+++.++
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 6666666666666666654
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.77 E-value=7.2e-09 Score=88.44 Aligned_cols=165 Identities=12% Similarity=-0.064 Sum_probs=99.2
Q ss_pred CCHHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCC----------
Q 038112 3 ISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCP---------- 72 (625)
Q Consensus 3 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------- 72 (625)
..|..........|+++.|...++...... +.....+..++..+...|++++|...|.+++...+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 82 (198)
T 2fbn_A 5 HHHHHHSSGRENLYFQGAKKSIYDYTDEEK--VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK 82 (198)
T ss_dssp -----------------CCCSGGGCCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHH
T ss_pred ccccchhhhhhhhhhccccCchhhCCHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 345666666777788888888777654433 45567788888889999999999999999998754322
Q ss_pred -----HHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 038112 73 -----EDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVK 147 (625)
Q Consensus 73 -----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (625)
..++..++.++...|++++|+..++++.... +.+...+..+..++..
T Consensus 83 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----------------------------p~~~~~~~~lg~~~~~ 134 (198)
T 2fbn_A 83 KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID----------------------------KNNVKALYKLGVANMY 134 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------------------------cccHHHHHHHHHHHHH
Confidence 2667777777777777777777777764422 3456667777777778
Q ss_pred cCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHH-HHHHHHHh
Q 038112 148 SGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAK-EIWERLVM 198 (625)
Q Consensus 148 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~ 198 (625)
.|++++|+..|++..+..+ .+...+..+..++...++..++. ..+..+..
T Consensus 135 ~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 135 FGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888888777632 35666777777777777666666 44444443
No 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.76 E-value=1.4e-07 Score=87.68 Aligned_cols=130 Identities=9% Similarity=-0.060 Sum_probs=98.1
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 038112 468 MITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPD--------------VTMYNILIHGLCSAGKVEDALQLYSNMKKRN 533 (625)
Q Consensus 468 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 533 (625)
...+..+...+.+.|++++|...|++.++...... ...+..++.+|...|++++|+..++++++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44566666677777777777777777766432211 4778888888888999999999998888863
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHH-HHHHHHHH
Q 038112 534 CVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDA-FEFLNDAL 600 (625)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 600 (625)
+.+...+..++.+|...|++++|+..|+++++ +.| +...+..+..++.+.|+.++| ...+++|.
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888899999999999999999888 566 457777888888888888887 45666654
No 152
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.75 E-value=2.2e-07 Score=72.84 Aligned_cols=114 Identities=15% Similarity=0.078 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 038112 505 MYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGL 583 (625)
Q Consensus 505 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 583 (625)
.+..++..+...|++++|...++++... .+.+...+..++.++...|++++|+..++++++ ..| +...+..++.++
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL-NPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC--IDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh--cCccCHHHHHHHHHHH
Confidence 3444444444445555555555444443 122344444445555555555555555555444 223 234444444445
Q ss_pred hhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 038112 584 CSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622 (625)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 622 (625)
...|++++|.+.+++..+.. +.+...+..+..++...|
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 55555555555555544321 112334444444444433
No 153
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.75 E-value=3.3e-07 Score=71.04 Aligned_cols=95 Identities=21% Similarity=0.330 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 038112 504 TMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKG 582 (625)
Q Consensus 504 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 582 (625)
..+..++..+...|++++|..+++++.+. .+.+..++..++.++...|++++|..+++++.+ ..| +...+..++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHH
Confidence 34444444455555555555555555443 122344444555555555555555555555544 222 33444444555
Q ss_pred HhhcCChHHHHHHHHHHHH
Q 038112 583 LCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~ 601 (625)
+...|++++|.+.++++.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHH
Confidence 5555555555555555543
No 154
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.74 E-value=2.3e-07 Score=72.95 Aligned_cols=113 Identities=10% Similarity=0.027 Sum_probs=57.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 038112 208 TYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFC 287 (625)
Q Consensus 208 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 287 (625)
.+..++..+...|++++|...|++.....+ .+...+..+...+...|++++|+..++++.+... .+...+..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHHH
Confidence 444455555555555555555555544332 2344455555555555555555555555554422 14445555555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 038112 288 RAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLE 322 (625)
Q Consensus 288 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (625)
..|++++|.+.|+......+.+...+..+..++..
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 55555555555555555544444455444444443
No 155
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.73 E-value=4.8e-07 Score=70.10 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 038112 242 FTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLL 321 (625)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (625)
..+..++..+...|++++|...++++.+... .+..++..++..+...|++++|..+++.+....+.+..++..++.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 3444455555555555555555555554321 234455555555555555555555555555555555555555555555
Q ss_pred hCCCHHHHHHHHHHHHHc
Q 038112 322 ENGKVDEAISIWELLREK 339 (625)
Q Consensus 322 ~~~~~~~a~~~~~~~~~~ 339 (625)
..|++++|...++++...
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 555555555555555554
No 156
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.73 E-value=1.3e-07 Score=74.05 Aligned_cols=102 Identities=8% Similarity=-0.093 Sum_probs=86.7
Q ss_pred CHHHHHHHHHccCChhHHHHHHHhhccCCCCCCCH---HHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCC---HHHHH
Q 038112 4 SAKRLLNLLKAEKNPHTALALFDSATREPGYAHSP---HLFHHILRRLIDPKLVVHVSRILELIEIQKCYCP---EDVAL 77 (625)
Q Consensus 4 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~ 77 (625)
..-.++..+..+|++++|+..|+.+++.. |.++ .++..++.++...|++++|...|+.+++..|. + ...+.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~ 80 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLL 80 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHH
Confidence 34567889999999999999999998865 5555 78889999999999999999999999998744 4 67788
Q ss_pred HHHHHHHccCCchHHHHHHHHhHHhhCCCcc
Q 038112 78 SVIQAYGKNSMPDKALDVFQRMNEIFGCEAG 108 (625)
Q Consensus 78 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 108 (625)
.++.++...|++++|...|+++...+|..+.
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 9999999999999999999999776665443
No 157
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.72 E-value=1.4e-07 Score=80.80 Aligned_cols=156 Identities=11% Similarity=-0.052 Sum_probs=93.1
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHcCCCH
Q 038112 445 KVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQ----KGFT-PDVTMYNILIHGLCSAGKV 519 (625)
Q Consensus 445 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~ 519 (625)
..|++++|.+.++.+... .......+..+...+...|++++|...+++.++ .+.. ....++..++.++...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 356666666644333321 112345566666666667777777776666654 1111 1244566777777778888
Q ss_pred HHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHccCChhHHHHHHHHHHHcC--C-CCC--HHHHHHHHHHHhhcCC
Q 038112 520 EDALQLYSNMKKR----NCVP--NLVTYNTLMDGLFKTGDCDKALEIWNHILEER--L-RPD--IISYNITLKGLCSCSR 588 (625)
Q Consensus 520 ~~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p~--~~~~~~l~~~~~~~g~ 588 (625)
++|...+++..+. +..+ ....+..++.++...|++++|...++++++.. . .+. ..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8887777776653 1111 13456777777888888888888887776520 1 111 1235666777778888
Q ss_pred hHHHHHHHHHHHH
Q 038112 589 MSDAFEFLNDALC 601 (625)
Q Consensus 589 ~~~A~~~~~~~~~ 601 (625)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877764
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.72 E-value=1.4e-07 Score=71.51 Aligned_cols=98 Identities=11% Similarity=-0.092 Sum_probs=85.3
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCC--CHHHHHHHHHHH
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYC--PEDVALSVIQAY 83 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 83 (625)
..++.++..+|++++|+..|+.+++.. |.++.++..++.++...|++++|.+.++++++.. +. +..++..++.++
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 567888999999999999999998877 7888999999999999999999999999999886 44 678888999999
Q ss_pred Hcc-CCchHHHHHHHHhHHhhCCC
Q 038112 84 GKN-SMPDKALDVFQRMNEIFGCE 106 (625)
Q Consensus 84 ~~~-~~~~~A~~~~~~~~~~~~~~ 106 (625)
... |++++|.+.++++....|..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCC
Confidence 999 99999999999987766544
No 159
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.69 E-value=9.4e-06 Score=73.50 Aligned_cols=183 Identities=8% Similarity=-0.057 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCC-hhhHHHH
Q 038112 152 LGALAVFDEMFERGVETNVVCYNILIDGFFKKG--DYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGR-FDECLEM 228 (625)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~ 228 (625)
++++..++.+....++ +..+|+.-..++...| .+++++..++.+.+.. +.|..+|+.-.-++...|. ++++++.
T Consensus 91 ~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 91 KAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 4445555555444322 4444444444444444 2455555555555442 3444444444444444444 3455555
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-----
Q 038112 229 WDRMKKNEREKDSFTYCSFIHGLCKA--------------GNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA----- 289 (625)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 289 (625)
++++.+..+ .|...|+.....+... +.++++++.+...+...+. |...|+.+-..+.+.
T Consensus 168 ~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccc
Confidence 555554432 2444444333333222 2244555555555544322 444444333333322
Q ss_pred ------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHc
Q 038112 290 ------GKIKECFELWEVMGRKGCLNVVSYNILIRGLL---ENGKVDEAISIWELLREK 339 (625)
Q Consensus 290 ------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~ 339 (625)
+.++++++.++++....|.+..++..++.... ..+..+++...+.++.+.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 23455666666666655555444333322111 234455555555555554
No 160
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.69 E-value=4.8e-07 Score=77.38 Aligned_cols=137 Identities=12% Similarity=-0.068 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC--
Q 038112 276 AVTYNAMIDGFCRAGKIKECFELWEVMGR------KGCLNVVSYNILIRGLLENGKVDEAISIWELLREK----NCNA-- 343 (625)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-- 343 (625)
..++..+...+...|++++|...+++... ..+....++..+...+...|++++|...+++.... +..+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 34444444455555555555555544433 11113445555666666666666666666555443 1011
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038112 344 DSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCK-LNAYTCNSLMNGFIQASKLENAIFLFK 422 (625)
Q Consensus 344 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 422 (625)
....+..+...+...|++++|...+++... .....+.+ ....++..+...+...|++++|...++
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLV--------------YAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWL 171 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------------HHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 122344555566666666666666664321 01111111 112334566666777777777777776
Q ss_pred HHHh
Q 038112 423 EMSR 426 (625)
Q Consensus 423 ~~~~ 426 (625)
+..+
T Consensus 172 ~al~ 175 (203)
T 3gw4_A 172 RARD 175 (203)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 161
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.69 E-value=5.1e-07 Score=70.68 Aligned_cols=96 Identities=17% Similarity=0.078 Sum_probs=47.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 038112 243 TYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLE 322 (625)
Q Consensus 243 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (625)
.+..++..+...|++++|...+++.....+ .+...+..++.++...|++++|.+.++......+.+...+..++.++..
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 334444444444555555555554444321 1344444455555555555555555555554444445555555555555
Q ss_pred CCCHHHHHHHHHHHHHc
Q 038112 323 NGKVDEAISIWELLREK 339 (625)
Q Consensus 323 ~~~~~~a~~~~~~~~~~ 339 (625)
.|++++|...+++....
T Consensus 93 ~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALEL 109 (131)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhc
Confidence 55555555555555444
No 162
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.66 E-value=1.5e-07 Score=72.13 Aligned_cols=97 Identities=11% Similarity=-0.152 Sum_probs=80.7
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK 85 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (625)
..++..+...|++++|+..|+.++... |.++..+..++.++...|++++|...++.+++..+ .+...+..++.++..
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Confidence 456788888999999999999988776 77888888899989899999999999999988864 477888888888888
Q ss_pred cCCchHHHHHHHHhHHhhCC
Q 038112 86 NSMPDKALDVFQRMNEIFGC 105 (625)
Q Consensus 86 ~~~~~~A~~~~~~~~~~~~~ 105 (625)
.|++++|...|+++....|.
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTT
T ss_pred HhhHHHHHHHHHHHHHcCCC
Confidence 88888888888887654443
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.64 E-value=4.5e-08 Score=83.46 Aligned_cols=122 Identities=8% Similarity=-0.114 Sum_probs=76.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038112 208 TYNVMINGLCKCGRFDECLEMWDRMKKNEREKD---------------SFTYCSFIHGLCKAGNVEGAERVYREMVESGI 272 (625)
Q Consensus 208 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 272 (625)
.+..+...+...|++++|+..|++.....+... ...+..+..++...|++++|+..++..++..+
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 344445555555555555555555554322110 24566667777777777777777777776532
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHH
Q 038112 273 FVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAI 330 (625)
Q Consensus 273 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 330 (625)
.+...+..+..+|...|++++|++.|+......|.+..++..+..++...++.+++.
T Consensus 120 -~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 120 -NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 256677777777777777777777777777777777777777777666665555554
No 164
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.64 E-value=3.8e-08 Score=75.40 Aligned_cols=95 Identities=5% Similarity=-0.083 Sum_probs=78.8
Q ss_pred ccCChhHHHHHHHhhccCC-CCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHH
Q 038112 14 AEKNPHTALALFDSATREP-GYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKA 92 (625)
Q Consensus 14 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 92 (625)
.+|++++|+..|+.+++.. ..|.++.++..++.++...|++++|...|+++++..| .+..++..++.++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence 4689999999999999861 0267789999999999999999999999999999974 5788999999999999999999
Q ss_pred HHHHHHhHHhhCCCcch
Q 038112 93 LDVFQRMNEIFGCEAGI 109 (625)
Q Consensus 93 ~~~~~~~~~~~~~~~~~ 109 (625)
+..|+++....|..+.+
T Consensus 81 ~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 81 VELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHhCCCcHHH
Confidence 99999998876665543
No 165
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.63 E-value=1.3e-06 Score=66.80 Aligned_cols=96 Identities=27% Similarity=0.230 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038112 503 VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLK 581 (625)
Q Consensus 503 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 581 (625)
...+..++..+...|++++|...+++.... .+.+...+..++.++...|++++|...++++++ ..| +...+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--LKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH--hCcccHHHHHHHHH
Confidence 445566666677777777777777777664 234566667777777777777777777777776 344 4566666677
Q ss_pred HHhhcCChHHHHHHHHHHHH
Q 038112 582 GLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 582 ~~~~~g~~~~A~~~~~~~~~ 601 (625)
++...|++++|.+.+++..+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777777764
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.63 E-value=2.8e-07 Score=72.96 Aligned_cols=96 Identities=11% Similarity=-0.069 Sum_probs=80.0
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK 85 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (625)
..++.++...|++++|+..|+.++... |.++.++..++.++...|++++|...++.+++.++ .+...+..++.++..
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 89 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQLE 89 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHH
Confidence 466788888889999999998888877 77888888888888888999999999988888864 477888888888888
Q ss_pred cCCchHHHHHHHHhHHhhC
Q 038112 86 NSMPDKALDVFQRMNEIFG 104 (625)
Q Consensus 86 ~~~~~~A~~~~~~~~~~~~ 104 (625)
.|++++|+..|+++....|
T Consensus 90 ~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 90 MESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHCh
Confidence 8888888888888766444
No 167
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.63 E-value=1.8e-07 Score=73.64 Aligned_cols=101 Identities=10% Similarity=-0.081 Sum_probs=87.9
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCC-------CH-----HHHHHHHHHhhCCCChhHHHHHHHHHHHh------
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAH-------SP-----HLFHHILRRLIDPKLVVHVSRILELIEIQ------ 67 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~-------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 67 (625)
-.++..+...|++++|+..|+.+++.. |. +. .+|..++.++.+.|++++|+..++.++..
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 457788999999999999999999877 44 33 39999999999999999999999999998
Q ss_pred -cCCCCHHHH----HHHHHHHHccCCchHHHHHHHHhHHhhCCCcch
Q 038112 68 -KCYCPEDVA----LSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI 109 (625)
Q Consensus 68 -~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 109 (625)
+| .+...| +..+.++...|++++|+..|++..+..|....+
T Consensus 93 ~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 93 LNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp TTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 74 477788 999999999999999999999998876665544
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.61 E-value=7.3e-07 Score=73.14 Aligned_cols=103 Identities=15% Similarity=0.045 Sum_probs=78.2
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038112 467 DMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMD 546 (625)
Q Consensus 467 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 546 (625)
+...+..+...+...|++++|...|++.++.. +.+...+..++.+|...|++++|+..++++++.. +.+...|..++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34567777778888888888888888887753 3367778888888888888888888888888752 445777888888
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCH
Q 038112 547 GLFKTGDCDKALEIWNHILEERLRPDI 573 (625)
Q Consensus 547 ~~~~~g~~~~A~~~~~~~~~~~~~p~~ 573 (625)
++...|++++|+..|+++++ +.|+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~--~~p~~ 112 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE--AEGNG 112 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HHSSS
T ss_pred HHHHccCHHHHHHHHHHHHH--hCCCc
Confidence 88888888888888888887 45533
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.60 E-value=2.6e-06 Score=67.28 Aligned_cols=96 Identities=18% Similarity=0.071 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 038112 502 DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITL 580 (625)
Q Consensus 502 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 580 (625)
+...+..++..+...|++++|...|++..... +.+...+..++.++...|++++|+..++++++ +.| +...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCchhHHHHHHHH
Confidence 34444455555555555555555555554431 22344555555555555555555555555555 233 334444555
Q ss_pred HHHhhcCChHHHHHHHHHHH
Q 038112 581 KGLCSCSRMSDAFEFLNDAL 600 (625)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~ 600 (625)
.+|...|++++|...+++++
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 55555555555555555544
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.60 E-value=5.3e-07 Score=70.59 Aligned_cols=107 Identities=18% Similarity=0.197 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-C-------HHH
Q 038112 504 TMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-D-------IIS 575 (625)
Q Consensus 504 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~-------~~~ 575 (625)
..+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++++ ..| + ..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE--VGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh--hccccchhHHHHHHH
Confidence 344555555666666666666666665542 33455556666666666666666666666655 222 1 445
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038112 576 YNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILV 615 (625)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 615 (625)
+..++.++.+.|++++|.+.++++.+. .|+...+..+.
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 119 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 555556666666666666666666543 24444444333
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.59 E-value=7.6e-07 Score=86.72 Aligned_cols=209 Identities=8% Similarity=-0.037 Sum_probs=107.0
Q ss_pred CCCCHHHH--HHHHHccCChhHHHHHHHhhccCCCCCCCH---------------HHHHHHHHHhhCCCChhHHHHHHHH
Q 038112 1 MVISAKRL--LNLLKAEKNPHTALALFDSATREPGYAHSP---------------HLFHHILRRLIDPKLVVHVSRILEL 63 (625)
Q Consensus 1 ~~~~~~~l--~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~ 63 (625)
||.-...| ++-+..+|++++|+..|..+++......+. .++..++..|...|++++|.+.+..
T Consensus 1 ~s~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~ 80 (434)
T 4b4t_Q 1 MSLPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPH 80 (434)
T ss_dssp CCSTTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34434444 466677888888888888877765322221 2345566666666666666666666
Q ss_pred HHHhcCCCCH-----HHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCC-CCCHhH
Q 038112 64 IEIQKCYCPE-----DVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGL-KPDVYS 137 (625)
Q Consensus 64 ~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 137 (625)
+.+.....+. .+...++..+...|+++.|..+++...... ...+. ..-..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------------------~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 81 STEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFA-----------------------KREKRVFLKHSL 137 (434)
T ss_dssp THHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHH-----------------------HHSSCCSSHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-----------------------HHhCccHHHHHH
Confidence 5543211111 122223333344445555555544432210 11111 112345
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhC--CCC---CCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC-----cc
Q 038112 138 YGTVINGLVKSGDLLGALAVFDEMFER--GVE---TNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPN-----VV 207 (625)
Q Consensus 138 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~ 207 (625)
+..+...+...|++++|..+++++... +.. ....++..++..|...|++++|...+++........++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777777777887777777776543 111 11235566666677777777777766665432100111 12
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHH
Q 038112 208 TYNVMINGLCKCGRFDECLEMWDRM 232 (625)
Q Consensus 208 ~~~~l~~~~~~~g~~~~a~~~~~~~ 232 (625)
.+..++..+...|++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 2334444455555555555555444
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.58 E-value=5e-07 Score=69.39 Aligned_cols=93 Identities=13% Similarity=0.006 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHh
Q 038112 506 YNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGLC 584 (625)
Q Consensus 506 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 584 (625)
+..++..+...|++++|+..|+++.+.. +.+...|..++.++...|++++|+..|+++++ +.| +...+..+..+|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3445556666777777777777776642 33566666777777777777777777777776 555 4456666666777
Q ss_pred hcCChHHHHHHHHHHHH
Q 038112 585 SCSRMSDAFEFLNDALC 601 (625)
Q Consensus 585 ~~g~~~~A~~~~~~~~~ 601 (625)
+.|++++|+..+++.++
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777777664
No 173
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.58 E-value=1e-06 Score=66.69 Aligned_cols=99 Identities=11% Similarity=-0.039 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHH
Q 038112 241 SFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL--NVVSYNILIR 318 (625)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~ 318 (625)
...+..+...+...|++++|...++++++... .+...+..+..++...|++++|.+.++......+. +..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 33444455555555555555555555555432 24455555566666666666666666666665555 5666666666
Q ss_pred HHHhC-CCHHHHHHHHHHHHHcC
Q 038112 319 GLLEN-GKVDEAISIWELLREKN 340 (625)
Q Consensus 319 ~~~~~-~~~~~a~~~~~~~~~~~ 340 (625)
++... |++++|.+.++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 66666 66666666666666553
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.55 E-value=5.7e-07 Score=70.39 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=81.9
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC--CCC----HHHHH
Q 038112 469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNC--VPN----LVTYN 542 (625)
Q Consensus 469 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~ 542 (625)
..+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|..+++++..... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456667777778888888888888877753 44677778888888888888888888888876421 111 66788
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038112 543 TLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKG 582 (625)
Q Consensus 543 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 582 (625)
.++.++...|++++|...|+++++ ..|+......+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHHH
Confidence 888888888899999998888888 55666655555444
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=3.1e-06 Score=67.84 Aligned_cols=96 Identities=19% Similarity=0.098 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHH
Q 038112 502 DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN----LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISY 576 (625)
Q Consensus 502 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~ 576 (625)
+...+..++..+...|++++|...|++..+. .|+ ...+..++.++...|++++|+..++++++ ..| +...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE--KDGGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTSCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCccCHHHH
Confidence 4555666666666666666666666666653 233 45566666666666666666666666666 344 44556
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 577 NITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 577 ~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
..+..+|...|++++|.+.+++.++
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666666666664
No 176
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=3.9e-06 Score=67.29 Aligned_cols=110 Identities=14% Similarity=-0.011 Sum_probs=83.3
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 038112 467 DMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPD----VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYN 542 (625)
Q Consensus 467 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 542 (625)
+...+..+...+...|++++|...|++.++. .|+ ...+..++.+|...|++++|...+++..+. .+.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CccCHHHHH
Confidence 4556677777788888888888888888775 344 567778888888889999999888888875 244677888
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCH-HHHHHHHH
Q 038112 543 TLMDGLFKTGDCDKALEIWNHILEERLRPDI-ISYNITLK 581 (625)
Q Consensus 543 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~ 581 (625)
.++.++...|++++|...|+++++ +.|+. ..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS--LEPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH--HCSSCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHH
Confidence 888888899999999999998888 56643 44443333
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.52 E-value=2.8e-07 Score=75.51 Aligned_cols=101 Identities=11% Similarity=0.011 Sum_probs=86.3
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccC--------CC--------CCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcC
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATRE--------PG--------YAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKC 69 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~--------~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 69 (625)
...+..+..+|++++|+..|..++.. .. .|....++..++.++.+.|++++|+..++.++..+
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~- 93 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE- 93 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-
Confidence 56788999999999999999999876 10 14556888999999999999999999999999997
Q ss_pred CCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCc
Q 038112 70 YCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEA 107 (625)
Q Consensus 70 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 107 (625)
|.+...+..++.+|...|++++|...|+++....|..+
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 45888999999999999999999999999877655443
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.51 E-value=7.5e-08 Score=93.73 Aligned_cols=150 Identities=11% Similarity=-0.016 Sum_probs=108.0
Q ss_pred CChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCC--------------HHHHHHHHH
Q 038112 16 KNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCP--------------EDVALSVIQ 81 (625)
Q Consensus 16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~ 81 (625)
+++++|+..|+.+.... |.....+..++..+.+.|++++|...|+++++..+... ..++..++.
T Consensus 248 ~~~~~A~~~~~~~~~~~--~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK--LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEECCCCGGGSCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34556666666555444 55677888899999999999999999999998865432 467777777
Q ss_pred HHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHH
Q 038112 82 AYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEM 161 (625)
Q Consensus 82 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 161 (625)
+|.+.|++++|+..|++++.. + +.+..+|..+..++...|++++|+..|+++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~---------------------------~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~a 377 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGL---------------------------D-SANEKGLYRRGEAQLLMNEFESAKGDFEKV 377 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---------------------------S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhc---------------------------C-CccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777777777776442 2 346777888888888888888888888888
Q ss_pred HhCCCCCCchhhHHHHHHHHhcCChhHHHH-HHHHH
Q 038112 162 FERGVETNVVCYNILIDGFFKKGDYMRAKE-IWERL 196 (625)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~ 196 (625)
++..+ .+...+..+..++...++++++.. .+..+
T Consensus 378 l~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 378 LEVNP-QNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88743 366778888888888888877664 44444
No 179
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.46 E-value=6.5e-06 Score=64.84 Aligned_cols=107 Identities=14% Similarity=0.052 Sum_probs=70.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHHccCChhHHHHHHHHHHHcCC--
Q 038112 505 MYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN-------------LVTYNTLMDGLFKTGDCDKALEIWNHILEERL-- 569 (625)
Q Consensus 505 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-- 569 (625)
.+...+..+...|++++|+..|++.++. .|+ ...|..++.++.+.|++++|+..++++++ +
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~n 88 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH--YFN 88 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hhh
Confidence 3444555566666666666666666653 222 22777777777788888888887777777 5
Q ss_pred -----CCCH-HHH----HHHHHHHhhcCChHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 038112 570 -----RPDI-ISY----NITLKGLCSCSRMSDAFEFLNDALC-----RGILPTTITWHILV 615 (625)
Q Consensus 570 -----~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~ 615 (625)
.|+. ..| .....++...|++++|+..|++.++ .|+.+........+
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 7754 566 7777788888888888888887764 35555554444333
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.46 E-value=2e-06 Score=70.33 Aligned_cols=102 Identities=17% Similarity=0.115 Sum_probs=60.1
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHhC--------CC---------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 038112 468 MITYSLLINGLCQSKKIDMALKLCCQFLQK--------GF---------TPDVTMYNILIHGLCSAGKVEDALQLYSNMK 530 (625)
Q Consensus 468 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 530 (625)
...+...+..+.+.|++++|...|.+.+.. .. +.+...|..++.+|...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345566666677777777777777766653 00 1123455556666666666666666666666
Q ss_pred hCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC
Q 038112 531 KRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD 572 (625)
Q Consensus 531 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 572 (625)
+.+ +.+...|..++.++...|++++|+..|+++++ +.|+
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~ 129 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPA 129 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGG
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCC
Confidence 542 33455666666666666666666666666666 4554
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.45 E-value=1.5e-07 Score=91.93 Aligned_cols=94 Identities=6% Similarity=-0.143 Sum_probs=82.0
Q ss_pred HHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC
Q 038112 8 LLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS 87 (625)
Q Consensus 8 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (625)
++..+..+|++++|+..|+.+++.. |.++.++..++.++.+.|++++|.+.++++++.++ .+...+..++.+|...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 4456678899999999999999887 88899999999999999999999999999999864 57888999999999999
Q ss_pred CchHHHHHHHHhHHhhC
Q 038112 88 MPDKALDVFQRMNEIFG 104 (625)
Q Consensus 88 ~~~~A~~~~~~~~~~~~ 104 (625)
++++|...|+++.+..|
T Consensus 89 ~~~eA~~~~~~al~~~p 105 (477)
T 1wao_1 89 KFRAALRDYETVVKVKP 105 (477)
T ss_dssp CHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 99999999998866444
No 182
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.43 E-value=3.5e-05 Score=74.88 Aligned_cols=195 Identities=9% Similarity=-0.034 Sum_probs=123.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCCc---------------chHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CC
Q 038112 177 IDGFFKKGDYMRAKEIWERLVMETSVYPNV---------------VTYNVMINGLCKCGRFDECLEMWDRMKKNERE-KD 240 (625)
Q Consensus 177 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~ 240 (625)
++.+.+.|++++|++.|..+.+......+. .++..++..|...|++++|.+.+.++...-.. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 344455555555555555555443111111 12556777788888888888877776542111 11
Q ss_pred h----hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----
Q 038112 241 S----FTYCSFIHGLCKAGNVEGAERVYREMVES----GIFV-DAVTYNAMIDGFCRAGKIKECFELWEVMGRKG----- 306 (625)
Q Consensus 241 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 306 (625)
. .+.+.+...+...|+++.+..++...... +..+ -..++..++..|...|++++|..+++.+....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12233334445667888888888776542 2222 24567788888999999999999888775431
Q ss_pred -CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--C-CC-C--hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038112 307 -CLNVVSYNILIRGLLENGKVDEAISIWELLREKN--C-NA-D--STTHGVLINGLCKNGYLNKAIQILNEV 371 (625)
Q Consensus 307 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 371 (625)
+....++..++..|...|++++|..++++..... . .| . ...+..+...+...++++.|...+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1256788888999999999999999988876531 1 11 1 233455566777889999998887753
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.42 E-value=1.1e-05 Score=62.77 Aligned_cols=26 Identities=12% Similarity=-0.009 Sum_probs=10.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038112 280 NAMIDGFCRAGKIKECFELWEVMGRK 305 (625)
Q Consensus 280 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 305 (625)
..+..++...|++++|...|+.+...
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33333333444444444444433333
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.38 E-value=7.9e-07 Score=82.64 Aligned_cols=100 Identities=15% Similarity=0.008 Sum_probs=77.0
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCH-----------------HHHHHHHHHhhCCCChhHHHHHHHHHHHhc
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSP-----------------HLFHHILRRLIDPKLVVHVSRILELIEIQK 68 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 68 (625)
..++..+..+|++++|+..|+.++... |.+. .++..++.++.+.|++++|...++.+++..
T Consensus 183 ~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 260 (338)
T 2if4_A 183 KMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE 260 (338)
T ss_dssp HHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 456778889999999999999988766 4444 377888888888999999999999998886
Q ss_pred CCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcc
Q 038112 69 CYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAG 108 (625)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 108 (625)
|.+...+..++.+|...|++++|+..|+++....|..+.
T Consensus 261 -p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~ 299 (338)
T 2if4_A 261 -EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA 299 (338)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Confidence 347788888888888889988888888888665554433
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.37 E-value=6.8e-07 Score=68.32 Aligned_cols=85 Identities=14% Similarity=0.045 Sum_probs=46.3
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHH
Q 038112 481 SKKIDMALKLCCQFLQKG--FTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKAL 558 (625)
Q Consensus 481 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 558 (625)
.|++++|+..|++.++.+ -+.+...+..++.+|...|++++|+..|+++.+.. +.+..++..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 455566666666666542 12234455556666666666666666666666542 334555566666666666666666
Q ss_pred HHHHHHHH
Q 038112 559 EIWNHILE 566 (625)
Q Consensus 559 ~~~~~~~~ 566 (625)
..++++++
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666655
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.36 E-value=2.9e-06 Score=69.26 Aligned_cols=132 Identities=16% Similarity=0.027 Sum_probs=86.6
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCC-CHH
Q 038112 470 TYSLLINGLCQSKKIDMALKLCCQFLQKGFT-PD----VTMYNILIHGLCSAGKVEDALQLYSNMKKR----NCVP-NLV 539 (625)
Q Consensus 470 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~ 539 (625)
++..+...+...|++++|...+++..+.... ++ ..++..++..+...|++++|...+++..+. +.++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455556666666666666666665542100 11 236667777788888888888888776653 1111 144
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 540 TYNTLMDGLFKTGDCDKALEIWNHILEE----RLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
++..++.++...|++++|...++++++. +..+ ....+..+...+...|++++|.+.+++.++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6777888888888888888888887752 1111 124566777788888889888888888764
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.35 E-value=4.8e-06 Score=80.99 Aligned_cols=128 Identities=7% Similarity=-0.068 Sum_probs=83.0
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC--------------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 038112 470 TYSLLINGLCQSKKIDMALKLCCQFLQKGFTP--------------DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCV 535 (625)
Q Consensus 470 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 535 (625)
.+..+...+.+.|++++|...|+++++..... ....|..++.+|.+.|++++|+..++++++.. +
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 34444455555555555555555555421111 14677777888888888888888888887752 4
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHH-HHHHHHH
Q 038112 536 PNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAF-EFLNDAL 600 (625)
Q Consensus 536 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 600 (625)
.+...+..++.+|...|++++|+..|+++++ +.| +...+..+..++.+.|+.+++. ..+++|.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888888888887 666 3456677777777777777665 3445443
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.33 E-value=2.7e-07 Score=69.82 Aligned_cols=92 Identities=11% Similarity=0.002 Sum_probs=78.1
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCC------HHHHHHH
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCP------EDVALSV 79 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l 79 (625)
..++.++..+|++++|+..|+.+++.. |.++.++..++.++...|++++|.+.++.+++..+. + ...+..+
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~ 84 (111)
T 2l6j_A 8 KEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQYRL 84 (111)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH
Confidence 567888999999999999999999887 888999999999999999999999999999988643 4 6677778
Q ss_pred HHHHHccCCchHHHHHHHHhH
Q 038112 80 IQAYGKNSMPDKALDVFQRMN 100 (625)
Q Consensus 80 ~~~~~~~~~~~~A~~~~~~~~ 100 (625)
+.++...|+++.|...+++++
T Consensus 85 ~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 85 ELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHhHhhhHhHHHHhH
Confidence 888888888888877776654
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.32 E-value=2e-05 Score=61.98 Aligned_cols=110 Identities=15% Similarity=-0.041 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChhHHH
Q 038112 483 KIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK----TGDCDKAL 558 (625)
Q Consensus 483 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 558 (625)
++++|.+.|++..+.| .|+.. +...|...+.+++|.++|++..+.| ++..+..|+..|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4455555555555554 22222 4455555555555666666665543 45555555555555 55666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhh----cCChHHHHHHHHHHHHCC
Q 038112 559 EIWNHILEERLRPDIISYNITLKGLCS----CSRMSDAFEFLNDALCRG 603 (625)
Q Consensus 559 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 603 (625)
.+|+++.+.| ++..+..+...|.. .+++++|.+++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666665532 44555555555555 556666666666665544
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.32 E-value=5.3e-06 Score=77.92 Aligned_cols=90 Identities=13% Similarity=-0.006 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 038112 502 DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITL 580 (625)
Q Consensus 502 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 580 (625)
+...|..++.+|.+.|++++|+..++++++.. +.+...+..++.+|...|++++|+..|+++++ +.| +...+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 46678888899999999999999999999863 44688888999999999999999999999998 666 456667777
Q ss_pred HHHhhcCChHHHHH
Q 038112 581 KGLCSCSRMSDAFE 594 (625)
Q Consensus 581 ~~~~~~g~~~~A~~ 594 (625)
.++...++.+++.+
T Consensus 349 ~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776666653
No 191
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.31 E-value=7.1e-07 Score=70.10 Aligned_cols=89 Identities=9% Similarity=-0.063 Sum_probs=71.7
Q ss_pred HccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCCh----------hHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 038112 13 KAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLV----------VHVSRILELIEIQKCYCPEDVALSVIQA 82 (625)
Q Consensus 13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (625)
.+.+.+++|+..|+.+++.+ |.++.+|..++.++...+++ ++|+..|+++++.+| .....+..++.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP-~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc-CcHHHHHHHHHH
Confidence 34567899999999999988 99999999999999988775 599999999999985 488899999999
Q ss_pred HHccC-----------CchHHHHHHHHhHHhhC
Q 038112 83 YGKNS-----------MPDKALDVFQRMNEIFG 104 (625)
Q Consensus 83 ~~~~~-----------~~~~A~~~~~~~~~~~~ 104 (625)
|...| ++++|+..|+++.+..|
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 98775 45555555555544433
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.31 E-value=1.3e-05 Score=79.71 Aligned_cols=169 Identities=10% Similarity=-0.049 Sum_probs=85.9
Q ss_pred hHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCC----------hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC-
Q 038112 19 HTALALFDSATREPGYAHSPHLFHHILRRLIDPKL----------VVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS- 87 (625)
Q Consensus 19 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 87 (625)
++|+..++.++..+ |.+..+|.....++...|+ ++++.+.++.+++.+| .+..+|..-..++.+.+
T Consensus 46 eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 46 ESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccc
Confidence 45566666665555 5555666555555555444 5566666666665543 35555555555555555
Q ss_pred -CchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-ChhhHHHHHHHHHhCC
Q 038112 88 -MPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSG-DLLGALAVFDEMFERG 165 (625)
Q Consensus 88 -~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~ 165 (625)
+++++++.++++.+..+.+ ..+|+.-..++.+.| .++++++.++++++..
T Consensus 123 ~~~~~el~~~~k~l~~d~~N----------------------------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 123 PNWARELELCARFLEADERN----------------------------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 174 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTC----------------------------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred ccHHHHHHHHHHHHhhcccc----------------------------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence 3355555555555544444 444444444444444 4444555555444443
Q ss_pred CCCCchhhHHHHHHHHhc--------------CChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCC
Q 038112 166 VETNVVCYNILIDGFFKK--------------GDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGR 221 (625)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 221 (625)
+. +...|+.....+... +.++++++.+..+.... |.+..+|..+...+.+.+.
T Consensus 175 p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~--P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 175 FS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC--SSCSHHHHHHHHHHSCCCC
T ss_pred CC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC--CCCccHHHHHHHHHhcCCC
Confidence 22 344444444333331 33455555555555542 3445555555555554444
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.29 E-value=2.4e-06 Score=79.43 Aligned_cols=147 Identities=12% Similarity=-0.060 Sum_probs=82.4
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038112 433 VVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHG 512 (625)
Q Consensus 433 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 512 (625)
...+..+...+.+.|++++|...|++.+.. .|+... +...++..++...+. ...|..++.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 344556666677777777777777777663 333221 222333333332211 1377888999
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHH-HhhcCChH
Q 038112 513 LCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI-ISYNITLKG-LCSCSRMS 590 (625)
Q Consensus 513 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~-~~~~g~~~ 590 (625)
|.+.|++++|+..++++++.. +.+...+..++.+|...|++++|+..|+++++ +.|+. ..+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999863 45788999999999999999999999999988 67744 555555554 33456778
Q ss_pred HHHHHHHHHHH
Q 038112 591 DAFEFLNDALC 601 (625)
Q Consensus 591 ~A~~~~~~~~~ 601 (625)
++.+++++|..
T Consensus 317 ~a~~~~~~~l~ 327 (338)
T 2if4_A 317 KQKEMYKGIFK 327 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHhhC
Confidence 88899999874
No 194
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.27 E-value=3.1e-06 Score=82.64 Aligned_cols=120 Identities=14% Similarity=0.094 Sum_probs=94.9
Q ss_pred cchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCCh
Q 038112 107 AGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDY 186 (625)
Q Consensus 107 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 186 (625)
...+.+.|++++|+..|+++++.. +.+..+|..+..++.+.|++++|+..++++.+..+ .+...+..++.++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 344777888888888888888875 55688899999999999999999999999998853 3678889999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCCcchHHHHHHH--HHhcCChhhHHHHHH
Q 038112 187 MRAKEIWERLVMETSVYPNVVTYNVMING--LCKCGRFDECLEMWD 230 (625)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 230 (625)
++|++.|+++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999988863 3445566666655 888899999999988
No 195
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.26 E-value=4.9e-06 Score=67.89 Aligned_cols=97 Identities=15% Similarity=0.009 Sum_probs=63.5
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCC-CHH
Q 038112 470 TYSLLINGLCQSKKIDMALKLCCQFLQK----GFTP-DVTMYNILIHGLCSAGKVEDALQLYSNMKKR----NCVP-NLV 539 (625)
Q Consensus 470 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~ 539 (625)
.+..+...+...|++++|...+++..+. +.++ ....+..++.++...|++++|...+++..+. +.++ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4455555666666666666666665541 1011 1345667777788888888888888777643 1111 145
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 540 TYNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
++..++.++...|++++|.+.++++++
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677788888888999999988888776
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.23 E-value=5.7e-06 Score=62.85 Aligned_cols=83 Identities=4% Similarity=-0.175 Sum_probs=74.4
Q ss_pred hHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHH
Q 038112 19 HTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQR 98 (625)
Q Consensus 19 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 98 (625)
+.|+..|+.+++.. |.++.++..++.++...|++++|...|+.+++..+ .+...+..++.++...|++++|+..|++
T Consensus 2 ~~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46888999999887 89999999999999999999999999999999874 5788999999999999999999999999
Q ss_pred hHHhhC
Q 038112 99 MNEIFG 104 (625)
Q Consensus 99 ~~~~~~ 104 (625)
+....+
T Consensus 79 al~~~~ 84 (115)
T 2kat_A 79 GLAAAQ 84 (115)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 866443
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.22 E-value=6.1e-05 Score=59.12 Aligned_cols=111 Identities=10% Similarity=-0.050 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCHHHH
Q 038112 447 ERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCS----AGKVEDA 522 (625)
Q Consensus 447 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 522 (625)
+++++|+.+|++..+.| .|+.. +...|...+.+++|.+.|++..+.| +...+..|..+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45677888888877765 23332 6666666677778888888888764 56777778888877 7788888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcC
Q 038112 523 LQLYSNMKKRNCVPNLVTYNTLMDGLFK----TGDCDKALEIWNHILEER 568 (625)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 568 (625)
..+|++..+.| ++..+..|+..|.. .+++++|..+|+++.+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888888764 67777888888887 788888888888888854
No 198
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.20 E-value=1.8e-05 Score=74.24 Aligned_cols=121 Identities=12% Similarity=-0.063 Sum_probs=87.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC---------------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038112 244 YCSFIHGLCKAGNVEGAERVYREMVES---------------GIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL 308 (625)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 308 (625)
+..+...+.+.|++++|+..|++.++. ..+.+..++..+..+|.+.|++++|++.++.+....|.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 455566666666777776666666541 01124567778888888889999999999888888888
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 038112 309 NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAI 365 (625)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 365 (625)
+..++..+..++...|++++|+..|+++.+..+. +...+..+...+...++.+++.
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888999999999999988888887433 4555556666665555555543
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.19 E-value=4.2e-06 Score=81.00 Aligned_cols=134 Identities=7% Similarity=-0.126 Sum_probs=98.1
Q ss_pred HHHccCChhHHHHHHHhhccCC------CCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhc----CCCCH---HHHH
Q 038112 11 LLKAEKNPHTALALFDSATREP------GYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQK----CYCPE---DVAL 77 (625)
Q Consensus 11 ~l~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~ 77 (625)
.+..+|++++|+..++.++... .+|....++..++.+|...|++++|+.++++++... .+.++ ..++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3668999999999998887531 233445677888899999999999999999988642 12233 3667
Q ss_pred HHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHH
Q 038112 78 SVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAV 157 (625)
Q Consensus 78 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 157 (625)
.++..|..+|++++|..+++++ +.+++..+..+.|....+.+.+..++...+.+++|..+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~A--------------------l~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~ 457 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKA--------------------YAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFM 457 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH--------------------HHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH--------------------HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999876 44555555444233334456666777778888888888
Q ss_pred HHHHHhC
Q 038112 158 FDEMFER 164 (625)
Q Consensus 158 ~~~~~~~ 164 (625)
|..+.+.
T Consensus 458 ~~~~~~~ 464 (490)
T 3n71_A 458 YHKMREA 464 (490)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888654
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.17 E-value=2e-06 Score=64.96 Aligned_cols=94 Identities=13% Similarity=0.090 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-------HH
Q 038112 502 DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD-------II 574 (625)
Q Consensus 502 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~ 574 (625)
+...+..++..+...|++++|+..|+++.+. .+.+...+..++.++...|++++|+..++++++ +.|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHH
Confidence 4556777777888888888888888888775 244677788888888888888888888888887 5664 44
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHH
Q 038112 575 SYNITLKGLCSCSRMSDAFEFLND 598 (625)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~ 598 (625)
.+..+..++...|++++|++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 555566666666666655554443
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.12 E-value=0.00011 Score=73.11 Aligned_cols=172 Identities=8% Similarity=-0.062 Sum_probs=112.4
Q ss_pred hhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcC
Q 038112 151 LLGALAVFDEMFERGVETNVVCYNILIDGFFKKGD----------YMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCG 220 (625)
Q Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 220 (625)
.++|+..+++++..++. +..+|+.-..++...|+ ++++++.++.+.+.. +.+..+|+.-.-++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcc
Confidence 34567777777766433 44556655555555555 677777777777653 455666766666666667
Q ss_pred --ChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc--------
Q 038112 221 --RFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAG-NVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA-------- 289 (625)
Q Consensus 221 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 289 (625)
+++++++.++++.+..+ .+..+|+.-...+...| .++++++.++++++..+. +...|.....++...
T Consensus 122 ~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 55777777777776654 36666666666666666 677777777777666543 666666665555542
Q ss_pred ------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHH
Q 038112 290 ------GKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVD 327 (625)
Q Consensus 290 ------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 327 (625)
+.++++++.+..+....|.+..+|+.+...+...++.+
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence 44677777887777777777777777777776666533
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.12 E-value=1.7e-05 Score=56.99 Aligned_cols=76 Identities=8% Similarity=-0.044 Sum_probs=48.0
Q ss_pred HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112 7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK 85 (625)
Q Consensus 7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (625)
.++.++...|++++|+..|+.++... |.++.++..++.++...|++++|.+.++++++..| .+...+..++.++..
T Consensus 14 ~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 14 NLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHh
Confidence 45566666666777777666666655 56666666666666666677777666666666643 355555555555543
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.07 E-value=6e-06 Score=64.84 Aligned_cols=98 Identities=9% Similarity=0.034 Sum_probs=67.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 038112 481 SKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGK----------VEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK 550 (625)
Q Consensus 481 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 550 (625)
.+.+++|.+.++..++.. +.+...|..+..++...++ +++|+..|++.++.+ +.+..+|..++.+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 345666666666666653 3356666666666666554 458888888888752 3357778888888877
Q ss_pred cC-----------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038112 551 TG-----------DCDKALEIWNHILEERLRPDIISYNITLKG 582 (625)
Q Consensus 551 ~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 582 (625)
.| ++++|++.|+++++ +.|+...|...+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 64 78888888888888 78877666555543
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.01 E-value=2.9e-05 Score=58.84 Aligned_cols=79 Identities=18% Similarity=0.141 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 038112 486 MALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHIL 565 (625)
Q Consensus 486 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (625)
.|...+++.++.. +.+...+..++.+|...|++++|+..|+++.+.. +.+...+..++.++...|++++|...|++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3556666666643 3356677777777777777777777777777652 3456677777777777777777777777776
Q ss_pred H
Q 038112 566 E 566 (625)
Q Consensus 566 ~ 566 (625)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 6
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.00 E-value=5e-05 Score=54.44 Aligned_cols=79 Identities=20% Similarity=0.312 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038112 503 VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLK 581 (625)
Q Consensus 503 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 581 (625)
...+..++..+...|++++|...+++..+.. +.+...+..++.++...|++++|+..++++++ ..| +...+..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCHHHHHHHHH
Confidence 3444555555555555555555555555431 23445555555555555555555555555555 333 3344444444
Q ss_pred HHh
Q 038112 582 GLC 584 (625)
Q Consensus 582 ~~~ 584 (625)
++.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 206
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.97 E-value=5.6e-09 Score=95.55 Aligned_cols=234 Identities=12% Similarity=0.111 Sum_probs=142.2
Q ss_pred CCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCC
Q 038112 36 HSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQ 115 (625)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 115 (625)
..|.+|..++.+.++.++..+|++.|- +. .|+..|..++....+.|.+++-+.++..+.
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaR--------------- 110 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMAR--------------- 110 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS---------------
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHH---------------
Confidence 456677777777777777766654432 21 244455566666666666666666666542
Q ss_pred hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHH
Q 038112 116 FEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWER 195 (625)
Q Consensus 116 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 195 (625)
+. ..++..=+.++-+|++.++..+-.+.+ ..|+..-...++.-|...|.++.|.-+|..
T Consensus 111 ------------k~--~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~ 169 (624)
T 3lvg_A 111 ------------KK--ARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNN 169 (624)
T ss_dssp ------------TT--CCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGG
T ss_pred ------------HH--hcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHh
Confidence 22 123344466777788777765543322 235666677777778888888777766543
Q ss_pred HHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 038112 196 LVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVD 275 (625)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 275 (625)
...|..|..++.+.|++..|.+.-++ ..++.||..+-.+|...+.+.-|.-.--.++-..
T Consensus 170 ----------isN~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha---- 229 (624)
T 3lvg_A 170 ----------VSNFGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA---- 229 (624)
T ss_dssp ----------SCCCTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS----
T ss_pred ----------CccHHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH----
Confidence 23344555566677777766654433 2466777777778888777776655544444221
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHH
Q 038112 276 AVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIW 333 (625)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 333 (625)
.-...++..|...|.+++-+.+++.-..........|+.|+-.|++- ++++..+.+
T Consensus 230 -deL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHl 285 (624)
T 3lvg_A 230 -DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHL 285 (624)
T ss_dssp -SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHH
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 11223556677778888877777777655445777777777777765 344444443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.95 E-value=2.8e-05 Score=57.08 Aligned_cols=67 Identities=10% Similarity=0.079 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHh
Q 038112 35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEI 102 (625)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 102 (625)
|.++.++..++.++...|++++|++.|+.+++.+| .+...+..++.+|...|++++|+..|++....
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 78899999999999999999999999999999975 47778999999999999999999999988654
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.94 E-value=3.9e-05 Score=56.23 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 502 DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 502 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
+...+..++.+|...|++++|+..|+++.+.+ +.+...|..++.+|...|++++|+..|+++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45556666666666666666666666666542 33455666666666666666666666666655
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.93 E-value=1.4e-05 Score=58.57 Aligned_cols=85 Identities=6% Similarity=-0.070 Sum_probs=57.7
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHH-HHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPH-LFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYG 84 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (625)
-..+..+..+|++++|+..|+.+++.. |.++. ++..++.++...|++++|.+.|+.+++.+|. +...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~------ 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR------ 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH------
Confidence 345677777888888888888877766 77777 7777888888888888888888888877643 3333311
Q ss_pred ccCCchHHHHHHHHhHH
Q 038112 85 KNSMPDKALDVFQRMNE 101 (625)
Q Consensus 85 ~~~~~~~A~~~~~~~~~ 101 (625)
+.+.++...|++...
T Consensus 75 --~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 75 --KMVMDILNFYNKDMY 89 (99)
T ss_dssp --HHHHHHHHHHCCTTH
T ss_pred --HHHHHHHHHHHHHhc
Confidence 344555555555443
No 210
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.89 E-value=0.00021 Score=69.26 Aligned_cols=131 Identities=11% Similarity=-0.018 Sum_probs=94.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhc-----CCC---cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCC-C-ChhhHH
Q 038112 285 GFCRAGKIKECFELWEVMGRK-----GCL---NVVSYNILIRGLLENGKVDEAISIWELLREK-----NCN-A-DSTTHG 349 (625)
Q Consensus 285 ~~~~~~~~~~a~~~~~~~~~~-----~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~ 349 (625)
.+..+|++++|+.++++.... ++. ...+++.|+.+|...|++++|..++++.+.. |.. | ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455788999999888877543 222 4567889999999999999999998887653 222 2 234577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038112 350 VLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSR 426 (625)
Q Consensus 350 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 426 (625)
.+...|...|++++|..++++ |..++........+....+...+..++...+.+++|..+|..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~-----------Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICK-----------AYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH-----------HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999985 444444444444444445556666777778888888888887765
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.72 E-value=0.00027 Score=50.44 Aligned_cols=70 Identities=13% Similarity=-0.077 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCC
Q 038112 35 AHSPHLFHHILRRLIDPKL---VVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGC 105 (625)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 105 (625)
|.++..+..++.++...++ .++|...++++++.+| .+......++..+.+.|++++|+..|+++++..|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 6778888888887754433 6888888888888874 47788888888888888888888888888665443
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.71 E-value=6.9e-05 Score=54.80 Aligned_cols=85 Identities=19% Similarity=0.121 Sum_probs=68.5
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHH
Q 038112 42 HHILRRLIDPKLVVHVSRILELIEIQKCYCPED-VALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAK 120 (625)
Q Consensus 42 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 120 (625)
...+..+...|++++|.+.++.+++..+ .+.. .+..++.++...|++++|+..|+++....|..+.++.. +.+.++.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-~~~~~a~ 81 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-KMVMDIL 81 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-HHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-HHHHHHH
Confidence 3466778889999999999999999874 4777 99999999999999999999999998888877766533 5566666
Q ss_pred HHHHHHHH
Q 038112 121 RFLNSLWE 128 (625)
Q Consensus 121 ~~~~~~~~ 128 (625)
..|++...
T Consensus 82 ~~~~~~~~ 89 (99)
T 2kc7_A 82 NFYNKDMY 89 (99)
T ss_dssp HHHCCTTH
T ss_pred HHHHHHhc
Confidence 66655443
No 213
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.58 E-value=6.2e-06 Score=76.01 Aligned_cols=229 Identities=11% Similarity=0.046 Sum_probs=129.7
Q ss_pred HHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC
Q 038112 8 LLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS 87 (625)
Q Consensus 8 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (625)
+..+..+.|++++-++++..+++. ..++..-..++.+|++.++..+.++.+ . .++..-...++.-|...|
T Consensus 89 Vi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~ayAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~ 158 (624)
T 3lvg_A 89 VVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEK 158 (624)
T ss_dssp HHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHHHHHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHHHHHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHcc
Confidence 333334444444444444443322 222333344444444444443332221 0 123334455666666777
Q ss_pred CchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 038112 88 MPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVE 167 (625)
Q Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 167 (625)
.|+.|.-+|..+ ..+......+.+.|+++.|.+.-++ ..++.+|..+-.+|...+.+.-|...--.++-
T Consensus 159 lYeAAKilys~i-sN~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---- 227 (624)
T 3lvg_A 159 MYDAAKLLYNNV-SNFGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---- 227 (624)
T ss_dssp CSTTSSTTGGGS-CCCTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC----
T ss_pred CHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc----
Confidence 777777777665 4555555568888888887664333 34678999999999999998887655444442
Q ss_pred CCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCC------C
Q 038112 168 TNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKN-EREK------D 240 (625)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~------~ 240 (625)
.+.....++..|...|.+++-+.+++..... .....-.|+.|.-.|++- ++++..+.++....+ +++. .
T Consensus 228 -hadeL~elv~~YE~~G~f~ELIsLlEaglgl--ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ 303 (624)
T 3lvg_A 228 -HADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQ 303 (624)
T ss_dssp -CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS--TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTT
T ss_pred -cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 2233445777788889999999988887643 244556677777777765 445444444332211 1111 2
Q ss_pred hhhHHHHHHHHHhcCCHHHHH
Q 038112 241 SFTYCSFIHGLCKAGNVEGAE 261 (625)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~a~ 261 (625)
...|.-+.-.|..-.+++.|.
T Consensus 304 ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 304 AHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTCHHHHHHHHHHHTCHHHHH
T ss_pred HhhHHHHHHHHhcchhHHHHH
Confidence 233555555555555555443
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.48 E-value=0.0021 Score=58.39 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHH
Q 038112 502 DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISY 576 (625)
Q Consensus 502 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 576 (625)
++.++..+...+...|++++|...++++...+ |+...|..++..+.-.|++++|.+.|++++. +.|...+|
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~ 346 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL 346 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence 44455444444444455555555555555532 4444455555555555555555555555555 45544443
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.47 E-value=0.00039 Score=53.90 Aligned_cols=90 Identities=12% Similarity=-0.048 Sum_probs=72.7
Q ss_pred hhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCC---ChhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHccCCchHHH
Q 038112 18 PHTALALFDSATREPGYAHSPHLFHHILRRLIDPK---LVVHVSRILELIEIQKCY-CPEDVALSVIQAYGKNSMPDKAL 93 (625)
Q Consensus 18 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 93 (625)
...+.+.|......+ +.+..+...++-++.+.. +..+++.+++.+.+.+.| .+.+.++.++-++.+.|+|++|+
T Consensus 14 l~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 345666777766655 688999999999999988 666999999999998722 35678888999999999999999
Q ss_pred HHHHHhHHhhCCCcch
Q 038112 94 DVFQRMNEIFGCEAGI 109 (625)
Q Consensus 94 ~~~~~~~~~~~~~~~~ 109 (625)
+.++.+++..|.+..+
T Consensus 92 ~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhcCCCCHHH
Confidence 9999998887765544
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.41 E-value=0.0013 Score=46.80 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHccCC---hhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 537 NLVTYNTLMDGLFKTGD---CDKALEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 537 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
|+..+..++.++...++ .++|..+++++++ +.| +......+...+.+.|++++|+..|+++++
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444444433322 3455555555555 344 234444444455555555555555555553
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.39 E-value=0.0034 Score=57.08 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 038112 535 VPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWH 612 (625)
Q Consensus 535 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 612 (625)
+.++.++..++..+...|++++|...+++++. +.|+...|..+...+.-.|++++|.+.+++... +.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~--Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGID--LEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 55788888888888888999999999999999 568877777778888899999999999999886 457776654
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.35 E-value=0.0024 Score=49.58 Aligned_cols=86 Identities=13% Similarity=0.069 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCChhHHH
Q 038112 484 IDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAG---KVEDALQLYSNMKKRNCVP--NLVTYNTLMDGLFKTGDCDKAL 558 (625)
Q Consensus 484 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 558 (625)
...+.+.|.+..+.+ +++..+...+.+++++.+ +.++++.+++...+.+ .| +...+..|+-+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 345566666666655 367888888888888888 5668888888888763 24 4667778888888888999999
Q ss_pred HHHHHHHHcCCCCCH
Q 038112 559 EIWNHILEERLRPDI 573 (625)
Q Consensus 559 ~~~~~~~~~~~~p~~ 573 (625)
++++.+++ +.|+.
T Consensus 92 ~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHh--cCCCC
Confidence 98888888 77854
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.26 E-value=0.0011 Score=57.51 Aligned_cols=81 Identities=9% Similarity=0.003 Sum_probs=45.5
Q ss_pred hHHHHHHHhhccCCCCCC--CHHHHHHHHHHhhC-----CCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc-CCch
Q 038112 19 HTALALFDSATREPGYAH--SPHLFHHILRRLID-----PKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN-SMPD 90 (625)
Q Consensus 19 ~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~ 90 (625)
..|...++++++.+ |. +..+|..++..|.+ -|+.+.|.+.|++++..+|..+..+....+..++.. |+++
T Consensus 180 ~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 34555556665555 33 44555555555555 256666666666666665433455555566655553 5566
Q ss_pred HHHHHHHHhHH
Q 038112 91 KALDVFQRMNE 101 (625)
Q Consensus 91 ~A~~~~~~~~~ 101 (625)
+|.+.++++..
T Consensus 258 ~a~~~L~kAL~ 268 (301)
T 3u64_A 258 GFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 66666665544
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.22 E-value=0.0023 Score=60.91 Aligned_cols=86 Identities=10% Similarity=0.039 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHc-----C-CCCCH-HHHHHHHH
Q 038112 516 AGKVEDALQLYSNMKKR---NCVPN----LVTYNTLMDGLFKTGDCDKALEIWNHILEE-----R-LRPDI-ISYNITLK 581 (625)
Q Consensus 516 ~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-~~~~~l~~ 581 (625)
.|++++|..++++..+. -+.|+ ..+++.|+.+|...|++++|..+++++++- | -.|+. .+++.++.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666665542 11122 345666777777777777777777766641 1 12222 45666777
Q ss_pred HHhhcCChHHHHHHHHHHHH
Q 038112 582 GLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 582 ~~~~~g~~~~A~~~~~~~~~ 601 (625)
.|...|++++|..++++.++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77777777777777776653
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.21 E-value=0.0015 Score=48.01 Aligned_cols=63 Identities=6% Similarity=-0.064 Sum_probs=36.7
Q ss_pred HHHHHHHHccCChhHHHHHHHhhccCC-----CCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhc
Q 038112 6 KRLLNLLKAEKNPHTALALFDSATREP-----GYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQK 68 (625)
Q Consensus 6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 68 (625)
-.|+..+..+|++..|+..|+.+++.. +....+.++..++.++.+.|+++.|...++.+++..
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 355666666666666666666665432 112344555566666666666666666666666554
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.20 E-value=0.0016 Score=47.76 Aligned_cols=75 Identities=13% Similarity=-0.097 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcc
Q 038112 35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQK------CYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAG 108 (625)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 108 (625)
+.++..+..++..+.+.|++..|...|+.+++.. ......++..++.++.+.|+++.|+..+++++...|..+.
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 3567888999999999999999999999999863 1235678899999999999999999999999887776655
Q ss_pred h
Q 038112 109 I 109 (625)
Q Consensus 109 ~ 109 (625)
+
T Consensus 82 ~ 82 (104)
T 2v5f_A 82 A 82 (104)
T ss_dssp H
T ss_pred H
Confidence 4
No 223
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.11 E-value=0.0012 Score=62.81 Aligned_cols=95 Identities=7% Similarity=-0.126 Sum_probs=72.9
Q ss_pred hCCCChhHHHHHHHHHHHhc----CCCCH---HHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHH
Q 038112 49 IDPKLVVHVSRILELIEIQK----CYCPE---DVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKR 121 (625)
Q Consensus 49 ~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 121 (625)
...|++++|+.++++++... .+.++ .+++.++.+|..+|++++|..++++. +.
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a--------------------L~ 368 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI--------------------IK 368 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------------HH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH--------------------HH
Confidence 35689999999999998742 12222 46778999999999999999999876 44
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112 122 FLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFE 163 (625)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 163 (625)
++++....+.+....+++.+...|...|++++|..+++++.+
T Consensus 369 i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 369 PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 555555544333455689999999999999999999998765
No 224
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.09 E-value=0.0037 Score=59.54 Aligned_cols=92 Identities=18% Similarity=0.069 Sum_probs=63.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHc-----C-CCCCH-HH
Q 038112 510 IHGLCSAGKVEDALQLYSNMKKR---NCVPN----LVTYNTLMDGLFKTGDCDKALEIWNHILEE-----R-LRPDI-IS 575 (625)
Q Consensus 510 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-~~ 575 (625)
+.-+...|++++|+.++++..+. -+.|+ ..+++.|+.+|...|++++|+.+++++++- | -.|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455677888888888877753 11222 456778888888888888888888877751 1 22322 46
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112 576 YNITLKGLCSCSRMSDAFEFLNDALC 601 (625)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (625)
++.++..|...|++++|..+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77788888888888888888887764
No 225
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.06 E-value=0.0063 Score=57.98 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=71.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-----C-CCCC-HHH
Q 038112 475 INGLCQSKKIDMALKLCCQFLQK---GFTPD----VTMYNILIHGLCSAGKVEDALQLYSNMKKR-----N-CVPN-LVT 540 (625)
Q Consensus 475 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~ 540 (625)
+..+...|++++|..++++.++. -+.|+ ..+++.++.+|...|++++|+.+++++... | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44466778999999999988763 12222 557888999999999999999999988742 2 1222 557
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 541 YNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 541 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
++.|+..|...|++++|..+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999999876
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.75 E-value=0.0038 Score=46.43 Aligned_cols=95 Identities=11% Similarity=-0.053 Sum_probs=72.6
Q ss_pred HccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhH---HHHHHHHHHHhcCC-CCHHHHHHHHHHHHccCC
Q 038112 13 KAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVH---VSRILELIEIQKCY-CPEDVALSVIQAYGKNSM 88 (625)
Q Consensus 13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 88 (625)
........+...|....... ++++.+-..++-++.+..+..+ ++.+++.+.+.+.| ...+..+.++-++.+.|+
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~--~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh
Confidence 34444556666777665544 5788888889989998888777 88899998887622 345677788888999999
Q ss_pred chHHHHHHHHhHHhhCCCcch
Q 038112 89 PDKALDVFQRMNEIFGCEAGI 109 (625)
Q Consensus 89 ~~~A~~~~~~~~~~~~~~~~~ 109 (625)
|++|+..++.+++..|.+..+
T Consensus 90 Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHH
Confidence 999999999998887766554
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.74 E-value=0.012 Score=51.10 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHc-cC
Q 038112 484 IDMALKLCCQFLQKGFTPD---VTMYNILIHGLCS-----AGKVEDALQLYSNMKKRNCVP--NLVTYNTLMDGLFK-TG 552 (625)
Q Consensus 484 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~-~g 552 (625)
...|...+++.++. .|+ ...|..++..|.. -|+.++|.+.|++.++. .| +..++...+..++. .|
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 34566666666663 344 4456666666666 36777777777777764 33 35666666666665 36
Q ss_pred ChhHHHHHHHHHHH
Q 038112 553 DCDKALEIWNHILE 566 (625)
Q Consensus 553 ~~~~A~~~~~~~~~ 566 (625)
+.+++.+.+++++.
T Consensus 255 d~~~a~~~L~kAL~ 268 (301)
T 3u64_A 255 NRAGFDEALDRALA 268 (301)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHc
Confidence 77777777777776
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.68 E-value=0.014 Score=43.50 Aligned_cols=86 Identities=14% Similarity=0.062 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCChhHHH
Q 038112 484 IDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVED---ALQLYSNMKKRNCVP--NLVTYNTLMDGLFKTGDCDKAL 558 (625)
Q Consensus 484 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 558 (625)
...+.+-+......| .++..+-..+++++.+..+... ++.+++.+.+.+ .| .......|+-++.+.|++++|+
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 344455555554444 3667777777778877776655 777777777653 23 3455667777788888888888
Q ss_pred HHHHHHHHcCCCCCH
Q 038112 559 EIWNHILEERLRPDI 573 (625)
Q Consensus 559 ~~~~~~~~~~~~p~~ 573 (625)
++++.+++ +.|+.
T Consensus 95 ~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 95 KYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHH--hCCCC
Confidence 88888887 67743
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.64 E-value=0.016 Score=44.19 Aligned_cols=105 Identities=15% Similarity=0.063 Sum_probs=65.9
Q ss_pred CCCHHHHHHHHHHhhCCCCh------hHHHHHHHHHHHhcCCCCHHHHHHHHHH------HHccCCchHHHHHHHHhHHh
Q 038112 35 AHSPHLFHHILRRLIDPKLV------VHVSRILELIEIQKCYCPEDVALSVIQA------YGKNSMPDKALDVFQRMNEI 102 (625)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~ 102 (625)
|.++..|...+..+-+.|+. +...++|++++..-||.....+-..+.. +...++.++|+++|+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a--- 86 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA--- 86 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH---
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH---
Confidence 78899999988888888998 8888999999987654322222222221 12334555555555554
Q ss_pred hCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 038112 103 FGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVE 167 (625)
Q Consensus 103 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 167 (625)
++.+ +.-...|....+.-.++|+...|.+++...+..+..
T Consensus 87 ------------------------~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 87 ------------------------RANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp ------------------------HHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred ------------------------HHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 3322 222555666666666777777777777777776544
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.58 E-value=0.03 Score=42.74 Aligned_cols=109 Identities=15% Similarity=0.065 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHHHHHccCCc------hHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 038112 70 YCPEDVALSVIQAYGKNSMP------DKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVIN 143 (625)
Q Consensus 70 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 143 (625)
|.++++|...+..+-+.|++ +..+++|+++....|... .+.++.= ...|...+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-----~~~wrrY---------------I~LWIrYA~ 69 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-----YGQNESF---------------ARIQVRFAE 69 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-----GTTCHHH---------------HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-----cccHHHH---------------HHHHHHHHH
Confidence 45788888888888888888 777777777654333210 1111111 111222221
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038112 144 GLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMET 200 (625)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 200 (625)
+...++.+.|.++|+.+++.+-.- ...|...++.-.++|+...|++++......+
T Consensus 70 -~~ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 70 -LKAIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp -HHHHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred -HHHhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 134589999999999998763333 6677777788889999999999999999875
No 231
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.30 E-value=0.26 Score=51.95 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHH
Q 038112 311 VSYNILIRGLLENGKVDEAISIW 333 (625)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~a~~~~ 333 (625)
..|..++..+.+.++++.|.+.|
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y 704 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAF 704 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHH
Confidence 33333444444444443333333
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.17 Score=40.44 Aligned_cols=128 Identities=15% Similarity=0.130 Sum_probs=86.5
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 038112 442 GLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVED 521 (625)
Q Consensus 442 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 521 (625)
...+.|+++.|.++.+.+ .+...|..+.......|+++-|.++|.+..+ +..+.-.|...|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345678999998887665 3678899999999999999999999887643 2344555667888877
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 038112 522 ALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDA 599 (625)
Q Consensus 522 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 599 (625)
-.++-+.....| + ++....++...|++++++++|.+.-. -|... ......|-.+.|.++.+++
T Consensus 79 L~kla~iA~~~g---~---~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 79 LSKMQNIAQTRE---D---FGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc---c---HHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 777666666553 1 34445567788999999988755432 22111 1122256677788887766
No 233
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.05 E-value=0.098 Score=55.25 Aligned_cols=99 Identities=13% Similarity=0.068 Sum_probs=61.6
Q ss_pred HhcCCHHHHHH-HHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHH
Q 038112 409 IQASKLENAIF-LFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMA 487 (625)
Q Consensus 409 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 487 (625)
...++++.|.+ ++..+ ++......++..+.+.|.+++|+++.++.. .-.......|+++.|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHH
Confidence 45677777766 44211 112233566666777788777776553211 112334566888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 038112 488 LKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKK 531 (625)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 531 (625)
.++.+.+ .+...|..++..+.+.|+++.|.++|.++..
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 7775432 3567888888888888888888888887653
No 234
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.80 E-value=1.8 Score=43.23 Aligned_cols=74 Identities=9% Similarity=-0.008 Sum_probs=37.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038112 282 MIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGY 360 (625)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 360 (625)
.+..+.+.+++...+.++.. .|.+...-.....+....|+..+|....+.+-..+.. .+.....++..+.+.|.
T Consensus 78 ~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 78 FVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCC
Confidence 34445555665555543332 2335555555556666666666665555555444322 34444555555554444
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.59 Score=37.32 Aligned_cols=44 Identities=16% Similarity=0.290 Sum_probs=19.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 038112 287 CRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWEL 335 (625)
Q Consensus 287 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 335 (625)
.+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3444444444444333 1344444444444444444444444443
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.67 E-value=2.5 Score=44.02 Aligned_cols=212 Identities=11% Similarity=0.072 Sum_probs=120.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH--HhccCCHHHHHHHHHHHHHCCCCCCHhh--HHHHHHHH
Q 038112 403 SLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLING--LCKVERFGEAYSFVKEMLEKGWKPDMIT--YSLLINGL 478 (625)
Q Consensus 403 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~ 478 (625)
++...+.-.|+-+....++..+.+. .+......+..+ +...|+.+.+..+++.+... ..|.... ...+.-+|
T Consensus 495 ALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAy 570 (963)
T 4ady_A 495 GMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAY 570 (963)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHT
T ss_pred HHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHh
Confidence 4445566778888888888777653 133333333333 44678888888888888763 1222221 22445567
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh-hHH
Q 038112 479 CQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDC-DKA 557 (625)
Q Consensus 479 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A 557 (625)
+..|+.....++++.+.... ..+..-...+.-++...|+.+.+.+++..+.+.+ .|....-..++-+....|.. .++
T Consensus 571 aGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~a 648 (963)
T 4ady_A 571 AGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSA 648 (963)
T ss_dssp TTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred cCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHH
Confidence 88899887777888887642 2233333344445556777777777777666653 44444444444444445544 578
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhh--cC-------ChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCC
Q 038112 558 LEIWNHILEERLRPDIISYNITLKGLCS--CS-------RMSDAFEFLNDALC-RGILPTTITWHILVRAVMNNGA 623 (625)
Q Consensus 558 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g-------~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~ 623 (625)
+..+..+.. .+|..+-...+.++.. .| +....++.+.+... +.-.++...-..+..++...|.
T Consensus 649 id~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 649 IDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 888888875 5666554444443332 23 33333444334332 1222334455566666666654
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.81 Score=43.74 Aligned_cols=173 Identities=13% Similarity=0.070 Sum_probs=108.2
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH----hccCCHHHH--HHHHHHHHH--CC-
Q 038112 393 GCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGL----CKVERFGEA--YSFVKEMLE--KG- 463 (625)
Q Consensus 393 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a--~~~~~~~~~--~~- 463 (625)
+..........++..|...++++...+.+..+...... .......+++.+ ......+.. ..+.+.+.. .|
T Consensus 51 d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~k 129 (445)
T 4b4t_P 51 DLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENK 129 (445)
T ss_dssp STTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCC
T ss_pred chhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccc
Confidence 34556777888999999999999988888776653222 122223333322 222322221 111111110 01
Q ss_pred CCC---CHhhHHHHHHHHhccCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHh----
Q 038112 464 WKP---DMITYSLLINGLCQSKKIDMALKLCCQFLQK--GFTPD---VTMYNILIHGLCSAGKVEDALQLYSNMKK---- 531 (625)
Q Consensus 464 ~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 531 (625)
+-. .......+...+...|++.+|..++..+... +..+. ...+...++.|...+++.+|..++.++..
T Consensus 130 iflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~ 209 (445)
T 4b4t_P 130 IFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK 209 (445)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc
Confidence 111 1123356778888999999999999988642 22211 34666777889999999999999988753
Q ss_pred CCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112 532 RNCVPN--LVTYNTLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 532 ~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
...+|+ ...+...+..+...+++.+|...|.++.+
T Consensus 210 ~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 210 NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 222233 34567778888899999999998888876
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.50 E-value=0.53 Score=35.16 Aligned_cols=139 Identities=12% Similarity=0.120 Sum_probs=81.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 038112 410 QASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALK 489 (625)
Q Consensus 410 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 489 (625)
-.|..++..++..+.... .+..-||.+|--....-+-+-..++++..-+- + | ....|+......
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--D----------is~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--D----------LDKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--C----------GGGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-c--C----------cHhhhcHHHHHH
Confidence 456667777777666553 24444444443333444444444444444321 1 1 123345554444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 038112 490 LCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERL 569 (625)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 569 (625)
.+-.+ ..+...+...+..+...|.-++-.+++..+... .+|++.....++.+|.+.|+..+|.+++.++.++|+
T Consensus 83 C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 44332 124455556667777778888877777775443 467777788888888888888888888888887765
Q ss_pred C
Q 038112 570 R 570 (625)
Q Consensus 570 ~ 570 (625)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 4
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.50 E-value=2.9 Score=43.58 Aligned_cols=257 Identities=11% Similarity=0.035 Sum_probs=137.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------CcH--HHHHHH
Q 038112 249 HGLCKAGNVEGAERVYREMVESGIFVDA--VTYNAMIDGFCRAGKIKECFELWEVMGRKGC--------LNV--VSYNIL 316 (625)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~--~~~~~l 316 (625)
-+....|+.++++.++...+..+...+. ..-..+.-+....|...++.+++........ +.. .+...|
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3566788888888888776652111122 2333344445555655667777766554322 111 122233
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCC
Q 038112 317 IRGLLENGKVDEAISIWELLREKNCNADST--THGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGC 394 (625)
Q Consensus 317 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 394 (625)
..++.-.++ +++.+.+..+..... +... ....+...+...|+-+....++.. +....
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~------------------~~e~~- 520 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTY------------------SQETQ- 520 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHH------------------HHHCS-
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHH------------------HhccC-
Confidence 333333444 355555555554321 1111 111233344566776666666652 22221
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh-HH---HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhh
Q 038112 395 KLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVS-YN---TLINGLCKVERFGEAYSFVKEMLEKGWKPDMIT 470 (625)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 470 (625)
.-+..-...+.-++...|+.+.+..+.+.+... .++.. |. .+.-+|+..|+......++..+.+. ...+...
T Consensus 521 ~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRr 596 (963)
T 4ady_A 521 HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRR 596 (963)
T ss_dssp CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHH
T ss_pred cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHH
Confidence 112222333444455778888888888888763 23322 22 3445677889988777799988874 2223333
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHHHh
Q 038112 471 YSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKV-EDALQLYSNMKK 531 (625)
Q Consensus 471 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 531 (625)
...+.-++...|+.+.+.+++..+.+.+ .|....-..++-+....|+. .++...+..+..
T Consensus 597 aAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 597 AAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 3333334455677777777777666653 44444434444444445543 678888888875
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.21 E-value=0.57 Score=35.56 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHcCCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH
Q 038112 500 TPDVTMYNILIHGLCSAGKV---EDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI 573 (625)
Q Consensus 500 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 573 (625)
.|+..+-..+++++.+..+. .+++.+++.+.+.+..........|+-++.+.|++++|+++.+.+++ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 56777777778888877654 46777887777643222455667778888888888888888888888 77754
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.12 E-value=0.23 Score=37.15 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=50.2
Q ss_pred CCCCHHHHHHHHHHHHcCCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH
Q 038112 499 FTPDVTMYNILIHGLCSAGKV---EDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI 573 (625)
Q Consensus 499 ~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 573 (625)
..|+..+-..+++++.+..+. .+++.+++.+.+.+.......+..|+-++.+.|++++|+++.+.+++ +.|+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 356677777777777776654 45777777777653112355667777788888888888888888887 67754
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.04 E-value=0.054 Score=42.37 Aligned_cols=93 Identities=11% Similarity=-0.000 Sum_probs=67.4
Q ss_pred HHHHHccCChhHHHHHHHhhccCCCCCCC-------HHHHHHHHHHhhCCCChhHHHHHHHHHHHhcC------------
Q 038112 9 LNLLKAEKNPHTALALFDSATREPGYAHS-------PHLFHHILRRLIDPKLVVHVSRILELIEIQKC------------ 69 (625)
Q Consensus 9 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------ 69 (625)
.+.+...|-|+.|+.....++...+.+++ ..++..++.++...|+|..|...|+++++..-
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 35566778899998888876554322232 14667788899999999999999999865320
Q ss_pred ------------CCCHHHHHHHHHHHHccCCchHHHHHHHHhHH
Q 038112 70 ------------YCPEDVALSVIQAYGKNSMPDKALDVFQRMNE 101 (625)
Q Consensus 70 ------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 101 (625)
+.+.++.+.++.+|.+.+++++|+.+++.+|.
T Consensus 107 ~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 107 GNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 11125677888888888888888888888754
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.77 E-value=0.27 Score=37.28 Aligned_cols=75 Identities=12% Similarity=-0.099 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHhhCCCCh---hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch
Q 038112 35 AHSPHLFHHILRRLIDPKLV---VHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI 109 (625)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 109 (625)
.+++.+-...+-++.+..+. ..++.+++.+.+.++....+....++-++.+.|+|++|+++.+.+++..|.+..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 56777777777777776654 4688899999988765566777888889999999999999999998877765544
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.68 E-value=0.62 Score=34.82 Aligned_cols=79 Identities=14% Similarity=0.050 Sum_probs=61.8
Q ss_pred CCCCCHHHHHHHHHHHHccCCh---hHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC
Q 038112 533 NCVPNLVTYNTLMDGLFKTGDC---DKALEIWNHILEERLRP--DIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPT 607 (625)
Q Consensus 533 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (625)
+-.|+..+--.+++++.+..+. .+++.+++.+.+.+ | ....+..++-++.+.|++++|+++.+.+++ +.|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 3467888888899999987755 46889999998843 5 346777888899999999999999999996 5687
Q ss_pred HHHHHHHH
Q 038112 608 TITWHILV 615 (625)
Q Consensus 608 ~~~~~~l~ 615 (625)
..--..|-
T Consensus 111 N~QA~~Lk 118 (134)
T 3o48_A 111 NKQVGALK 118 (134)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 65444443
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.23 Score=50.45 Aligned_cols=52 Identities=21% Similarity=0.160 Sum_probs=26.4
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 038112 546 DGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDA 599 (625)
Q Consensus 546 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 599 (625)
..+...|+++-|+++.++++. ..| +..+|..|+.+|.+.|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 334445555555555555555 334 3355555555555555555555555544
No 246
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.20 E-value=1.3 Score=33.19 Aligned_cols=138 Identities=19% Similarity=0.118 Sum_probs=91.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 038112 446 VERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQL 525 (625)
Q Consensus 446 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 525 (625)
.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+. + | ...+|+.......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--D----------is~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--D----------LDKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--C----------GGGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-c--C----------cHhhhcHHHHHHH
Confidence 56667777777666653 23444444443333333433344444433221 1 1 1345666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCC
Q 038112 526 YSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGIL 605 (625)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (625)
+-.+-. +.......+......|..++-.+++..++.. -+|+++....+..+|.+.|+..+|.++++++-+.|++
T Consensus 84 ~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 544332 4555667778888999999999999996542 6789999999999999999999999999999998865
No 247
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.51 E-value=4 Score=36.58 Aligned_cols=107 Identities=12% Similarity=0.159 Sum_probs=53.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH----HHHHHCCCCcCHHHHHHHHHHHH
Q 038112 212 MINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVY----REMVESGIFVDAVTYNAMIDGFC 287 (625)
Q Consensus 212 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~~ 287 (625)
+..-|.+.+++++|++++..-. ..+.+.|+...|-++- +-..+.+++++......++..+.
T Consensus 41 i~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 41 VAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3444666667776666654321 1222334443333332 33333455556555555555554
Q ss_pred hcCC--------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHH
Q 038112 288 RAGK--------IKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIW 333 (625)
Q Consensus 288 ~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 333 (625)
.... ..+|+++-.........++.....+...|.+.+++.+|...|
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4332 112222222211111127777777888888888888877766
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.44 E-value=0.45 Score=48.32 Aligned_cols=126 Identities=11% Similarity=0.067 Sum_probs=78.8
Q ss_pred HHHHHHHhcCC-hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHC------CCCc-CH-----
Q 038112 211 VMINGLCKCGR-FDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAG-NVEGAERVYREMVES------GIFV-DA----- 276 (625)
Q Consensus 211 ~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~----- 276 (625)
.++..+...++ .+.|..+|+++....+..+......++......+ .--+|.+++.+.++. ...+ +.
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 34444445555 4778888888876643222211222232222222 233455555554421 1111 11
Q ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 038112 277 -----VTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELL 336 (625)
Q Consensus 277 -----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 336 (625)
.....-...+...|+++-|+++-++.....|.+-.+|..|..+|...|+++.|+-.++.+
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 122233455667899999999999999999999999999999999999999999888766
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.22 E-value=4.3 Score=36.11 Aligned_cols=108 Identities=13% Similarity=0.079 Sum_probs=53.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCcCHHHHHHHHHHHH
Q 038112 212 MINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERV----YREMVESGIFVDAVTYNAMIDGFC 287 (625)
Q Consensus 212 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~ 287 (625)
+..-|.+.+++++|++++..-. ..+.+.|+...|-++ .+-..+.+++++......++..+.
T Consensus 39 l~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 39 IANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3344556666666666654321 122333444443332 333344456666665555555554
Q ss_pred hcCCHH-HHHHHHHHH----HhcC---CCcHHHHHHHHHHHHhCCCHHHHHHHHH
Q 038112 288 RAGKIK-ECFELWEVM----GRKG---CLNVVSYNILIRGLLENGKVDEAISIWE 334 (625)
Q Consensus 288 ~~~~~~-~a~~~~~~~----~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 334 (625)
....-+ .-.++++.+ .+.+ ..++..+..+...|.+.|++.+|...|-
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 432111 111222222 1221 1277777778888888888877776653
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.05 E-value=0.66 Score=43.44 Aligned_cols=70 Identities=7% Similarity=0.079 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH-----cCCCCCHHH
Q 038112 505 MYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE-----ERLRPDIIS 575 (625)
Q Consensus 505 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 575 (625)
+...++..+...|+++++...+..+... .+-+...+..++.++.+.|+..+|++.|+++.+ .|+.|+..+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4444555566667777777666666654 244566666677777777777777776666543 366665543
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.59 E-value=1 Score=35.30 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=10.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 038112 174 NILIDGFFKKGDYMRAKEIWERL 196 (625)
Q Consensus 174 ~~l~~~~~~~g~~~~a~~~~~~~ 196 (625)
..++..+...|++.+|...|++.
T Consensus 67 ~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 67 VYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHH
Confidence 33444444444444444444443
No 252
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.23 E-value=10 Score=37.86 Aligned_cols=80 Identities=8% Similarity=-0.056 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 038112 414 LENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQ 493 (625)
Q Consensus 414 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 493 (625)
..++...+...... ..+.....-.+....+.|+++.|...|..|.... .........+.+++...|+.++|..+|..
T Consensus 268 ~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~ 344 (618)
T 1qsa_A 268 TDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQ 344 (618)
T ss_dssp CHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444555544332 1233223333333445677777777776665421 11233344556666677777777777777
Q ss_pred HHh
Q 038112 494 FLQ 496 (625)
Q Consensus 494 ~~~ 496 (625)
+..
T Consensus 345 ~a~ 347 (618)
T 1qsa_A 345 LMQ 347 (618)
T ss_dssp HHT
T ss_pred Hhc
Confidence 654
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.09 E-value=1.3 Score=41.40 Aligned_cols=72 Identities=10% Similarity=0.115 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCCChhhHH
Q 038112 278 TYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLRE-----KNCNADSTTHG 349 (625)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 349 (625)
+...++..+...|+++++...+..+....|.+...|..++.++...|+..+|++.|+.+.. .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3445677788899999999999999999888999999999999999999999999988754 48888776643
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.28 E-value=2.8 Score=29.44 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038112 518 KVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITL 580 (625)
Q Consensus 518 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 580 (625)
+.-+..+-++.+...+..|++.+....+++|.+.+|+.-|+++++-+..+ ..+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 34455555566666666666666666666666666666666666666553 222333444443
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.09 E-value=1.6 Score=30.52 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHH
Q 038112 116 FEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILI 177 (625)
Q Consensus 116 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 177 (625)
.-+.++-++.+...++-|++....+.+++|.+.+++..|.++|+-++.. ......+|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 3455666666677777788888888888888888888888888877765 222334455554
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.71 E-value=4.4 Score=44.34 Aligned_cols=51 Identities=12% Similarity=0.247 Sum_probs=25.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038112 212 MINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREM 267 (625)
Q Consensus 212 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 267 (625)
++..+...+..+-+.++..-. +.++..-..++.++...|++++|.+.|.+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344444455555544433222 223333344556666666666666666543
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.55 E-value=17 Score=39.83 Aligned_cols=188 Identities=14% Similarity=0.087 Sum_probs=112.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCC----C------------
Q 038112 174 NILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNE----R------------ 237 (625)
Q Consensus 174 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~------------ 237 (625)
..++..+...+.++.+.++.... +.+....-.++.++...|++++|.++|++....- .
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 34556666777777776654432 2333344556778888999999999997653110 0
Q ss_pred ------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038112 238 ------EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDA----VTYNAMIDGFCRAGKIKECFELWEVMGRKGC 307 (625)
Q Consensus 238 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 307 (625)
..-..-|..++..+-+.+.++.+.+.-...++.....+. ..|..++..+...|++++|...+-.+....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~- 968 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP- 968 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-
Confidence 001123667778888888888888888777664322222 257778889999999999988887776543
Q ss_pred CcHHHHHHHHHHHHhCCCH------------HHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 038112 308 LNVVSYNILIRGLLENGKV------------DEAISIWELLREK--NCNADSTTHGVLINGLCKNGYLNKAIQIL 368 (625)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~~------------~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 368 (625)
.-......|+..++..|.. ++..+++....+. .+...+.-|..|-.-+..+|++..|-.++
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vm 1043 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAII 1043 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHH
Confidence 2455666677666665554 3444444322211 11111223444555556667766655543
No 258
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.25 E-value=13 Score=35.44 Aligned_cols=93 Identities=12% Similarity=0.063 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCC-C--cHHH
Q 038112 245 CSFIHGLCKAGNVEGAERVYREMVES--GIFVD---AVTYNAMIDGFCRAGKIKECFELWEVMGR----KGC-L--NVVS 312 (625)
Q Consensus 245 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~--~~~~ 312 (625)
..|...+...|++.+|..++..+... +.... ...+...++.|...+++..|..++..+.. ..+ + -...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34555566666666666666665432 11111 23444555666666666666666665432 111 1 1234
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Q 038112 313 YNILIRGLLENGKVDEAISIWELLR 337 (625)
Q Consensus 313 ~~~l~~~~~~~~~~~~a~~~~~~~~ 337 (625)
+...+..+...+++.+|.+.|..+.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4455555556666666665555443
No 259
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.83 E-value=12 Score=34.62 Aligned_cols=170 Identities=11% Similarity=-0.006 Sum_probs=93.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCC-----HhhHHHHHHHHhccCCHHHHHHHHHHHHhC--CCCCCHHHH----
Q 038112 438 TLINGLCKVERFGEAYSFVKEMLEKGWKPD-----MITYSLLINGLCQSKKIDMALKLCCQFLQK--GFTPDVTMY---- 506 (625)
Q Consensus 438 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~---- 506 (625)
.++..|...|++.+|..++.++.+.--..| ...+...+..|...+++.++...+...... .+.+++.+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 567788889999999888888776411112 234555567788889999998888777542 222333322
Q ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHhC-C-C-CCC-HHHHHHHHHHHHccCChhHHHHHHH-HHHHcCCCCCHHHHHHHH
Q 038112 507 NILIHGLC-SAGKVEDALQLYSNMKKR-N-C-VPN-LVTYNTLMDGLFKTGDCDKALEIWN-HILEERLRPDIISYNITL 580 (625)
Q Consensus 507 ~~l~~~~~-~~g~~~~A~~~~~~~~~~-~-~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~p~~~~~~~l~ 580 (625)
..-+..+. ..++|..|...|-+..+. . . .|. ......++-+..-.++..+-..++. +....-..|+...+..++
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~ 263 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVA 263 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHH
Confidence 22234455 788999998887766532 1 0 111 1111222223333344333333222 211111345555555666
Q ss_pred HHHhhcCChHHHHHHHHHHHHCCCCCCHH
Q 038112 581 KGLCSCSRMSDAFEFLNDALCRGILPTTI 609 (625)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (625)
.+| ..+++.+..++++.... .+..|+.
T Consensus 264 ~a~-~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 264 EAS-HKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HHH-HTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred HHH-HhCCHHHHHHHHHHHHH-HHhcChH
Confidence 554 45677777777666543 2445554
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.87 E-value=5.9 Score=29.58 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038112 518 KVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITL 580 (625)
Q Consensus 518 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 580 (625)
+.-+..+-++.+...++.|++.+....+++|.+.+|+.-|+++++-+..+ ..+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34455555666666667777777777777777777777777777766654 333444555544
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.29 E-value=4.2 Score=38.62 Aligned_cols=97 Identities=9% Similarity=-0.132 Sum_probs=56.9
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC---CCCCCHH--HHH
Q 038112 470 TYSLLINGLCQSKKIDMALKLCCQFLQK--GFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKR---NCVPNLV--TYN 542 (625)
Q Consensus 470 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~--~~~ 542 (625)
+...++..|.+.|+++.|.+++.++... +...-...+..+++.+...+++..+...+.++... +..|+.. ...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4566777777777777777777777653 22223556666677777777777777777766532 2122211 111
Q ss_pred HHHHHHHccCChhHHHHHHHHHHH
Q 038112 543 TLMDGLFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 543 ~l~~~~~~~g~~~~A~~~~~~~~~ 566 (625)
.-+..+...+++..|...|-++..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 223334456677777666666554
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.88 E-value=11 Score=32.36 Aligned_cols=58 Identities=9% Similarity=0.012 Sum_probs=45.5
Q ss_pred HHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhC
Q 038112 46 RRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFG 104 (625)
Q Consensus 46 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 104 (625)
..+.+.|++.+++.....-++.+ |.|......+++.++-.|+++.|...++.+.+..|
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p 62 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 62 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 35667888888888888888886 45888888888888888888888888887755433
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.36 E-value=3.7 Score=30.61 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHH
Q 038112 115 QFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILID 178 (625)
Q Consensus 115 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 178 (625)
|.-+.++-++.+...++-|++......+++|.+.+|+..|.++|+-++.. ..+...+|..++.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 34466777777778888899999999999999999999999999988766 3334445666553
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.99 E-value=16 Score=32.50 Aligned_cols=164 Identities=15% Similarity=0.078 Sum_probs=86.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHH----HHHHHHCCCCCCHhhHHHHHHHH
Q 038112 403 SLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSF----VKEMLEKGWKPDMITYSLLINGL 478 (625)
Q Consensus 403 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~ 478 (625)
.+..-|.+.+++++|++++..-.. .+.+.|+...|-++ ++...+.+.+++......++..+
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344556777778887777655332 13344555444443 44444556677776666666665
Q ss_pred hccCCHH-HHHHHHHHHHh----CC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 038112 479 CQSKKID-MALKLCCQFLQ----KG--FTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKT 551 (625)
Q Consensus 479 ~~~~~~~-~A~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 551 (625)
.....-+ .=.++++++++ .| ..-++.....++..|.+.|++.+|...|-. +-..+...+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHh
Confidence 4432111 11233333332 11 123677788888888888888888876641 1111344555554444443
Q ss_pred ---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 038112 552 ---GDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDAL 600 (625)
Q Consensus 552 ---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (625)
|...++--++- ..+--|.-.|+...|..+++...
T Consensus 179 ~~~~~~~e~dlf~~---------------RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 179 VDDIEDSTVAEFFS---------------RLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp TTCCCHHHHHHHHH---------------HHHHHHHHTTBHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHH---------------HHHHHHHHhcCHHHHHHHHHHHH
Confidence 43333222111 11223445677777777777654
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.70 E-value=20 Score=33.26 Aligned_cols=97 Identities=12% Similarity=0.001 Sum_probs=45.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 038112 350 VLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHG-CKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRK- 427 (625)
Q Consensus 350 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 427 (625)
.++..|...|++.+|..++.++.. .+...+ ...-..++..-+..|...+++.++...+......
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~--------------~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLR--------------ELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--------------HHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH--------------HHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 345556666666666665554332 121111 0112233444455666667777776666665432
Q ss_pred -CCCCChhhHH----HHHHHHh-ccCCHHHHHHHHHHHH
Q 038112 428 -GCSPTVVSYN----TLINGLC-KVERFGEAYSFVKEML 460 (625)
Q Consensus 428 -~~~~~~~~~~----~l~~~~~-~~~~~~~a~~~~~~~~ 460 (625)
.+.+++.... .-...+. ..++|..|...|-+..
T Consensus 170 ~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 170 NAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1112222211 1122234 5667777766665543
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.50 E-value=20 Score=32.17 Aligned_cols=164 Identities=10% Similarity=0.052 Sum_probs=88.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHH----HHHHHHCCCCCCHhhHHHHHHHH
Q 038112 403 SLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSF----VKEMLEKGWKPDMITYSLLINGL 478 (625)
Q Consensus 403 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~ 478 (625)
++..-|.+.+++++|++++..-.. .+.+.|+...|-++ ++-..+.+++++......++..+
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344457777888888877655332 13334554444333 34444456667766666666665
Q ss_pred hccCCHH-HHHHHHHHHHh----CC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 038112 479 CQSKKID-MALKLCCQFLQ----KG--FTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKT 551 (625)
Q Consensus 479 ~~~~~~~-~A~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 551 (625)
.....-+ .=..+++++++ .| ..-++.....++..|.+.+++.+|...|- . |..++...+..++.-+...
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHT
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHh
Confidence 5444211 11223333322 11 23467777888899999999999888772 2 2233445665555444443
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 038112 552 GDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDAL 600 (625)
Q Consensus 552 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (625)
+...++--+ ....+--|.-.++...|..+++...
T Consensus 181 ~~~~e~dlf---------------iaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 181 DESHTAPLY---------------CARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp SCGGGHHHH---------------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCccHHHH---------------HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 332211111 1122223555677888877766655
No 267
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.73 E-value=11 Score=35.79 Aligned_cols=64 Identities=8% Similarity=-0.101 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHccCCchHHHHHHHHhHH
Q 038112 38 PHLFHHILRRLIDPKLVVHVSRILELIEIQKC--YCPEDVALSVIQAYGKNSMPDKALDVFQRMNE 101 (625)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 101 (625)
..+...++..+.+.|+++.|.+.|.++...-. ..-.+.+...++++...+++..+...+.++..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34556666777777777777777777665322 22334556666666667777777666666633
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=83.99 E-value=13 Score=30.29 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 038112 516 AGKVEDALQLYSNMKKRNCVPN-LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP 571 (625)
Q Consensus 516 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 571 (625)
.++..++..+|..|...|+-.. ...|...+..+...|++.+|.++|+..++.+..|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5557788999999988876554 6667788888888999999999999999987777
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=82.25 E-value=13 Score=30.38 Aligned_cols=58 Identities=19% Similarity=0.126 Sum_probs=48.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 038112 481 SKKIDMALKLCCQFLQKGFTP-DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNL 538 (625)
Q Consensus 481 ~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 538 (625)
.++...+..+|..|...|+.. -+..|...+..+...|++.+|..+|+..++.+-.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 445779999999999876654 3667888889999999999999999999998777743
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.01 E-value=10 Score=32.60 Aligned_cols=113 Identities=12% Similarity=0.099 Sum_probs=78.5
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHcc
Q 038112 476 NGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLV----TYNTLMDGLFKT 551 (625)
Q Consensus 476 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~ 551 (625)
....+.|+++.+++.+..-++.. +.|...-..|++.+|-.|+++.|.+-++.+.+. .|+.. .|..++.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH----
Confidence 45678899999999999888874 558888889999999999999999999998884 45533 33333332
Q ss_pred CChhHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHh--hcCChHHHHHHHHHHHH
Q 038112 552 GDCDKALEIWNHILEERLRP-----DIISYNITLKGLC--SCSRMSDAFEFLNDALC 601 (625)
Q Consensus 552 g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 601 (625)
...=.++..-+..| ...-...++.+.. ..|+.++|.++-+.+.+
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 22223334433333 2344455555444 46999999999988865
No 271
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=74.66 E-value=27 Score=26.96 Aligned_cols=50 Identities=12% Similarity=0.128 Sum_probs=25.1
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 038112 522 ALQLYSNMKKRNCVPN-LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP 571 (625)
Q Consensus 522 A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 571 (625)
+.++|..|...|+-.. ...|...+..+...|++.+|.++|+..++.+..|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555444332 3344445555555555555555555555544444
No 272
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=70.49 E-value=37 Score=26.66 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC
Q 038112 522 ALQLYSNMKKRNCVPN-LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD 572 (625)
Q Consensus 522 A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 572 (625)
...+|..|...|+-.. ...|...+..+...|++.+|.++|+..++.+..|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4455666666655433 44455556666666666666666666666655553
No 273
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.56 E-value=48 Score=31.92 Aligned_cols=67 Identities=12% Similarity=0.001 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCC---C---HHHHHHHHHHHHccCCchHHHHHHHHhHHhhC
Q 038112 36 HSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYC---P---EDVALSVIQAYGKNSMPDKALDVFQRMNEIFG 104 (625)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 104 (625)
.....++.+++.|...+.+++|.++.....- |.. + ..-++.+++.+.-+++|.+|.+.+..+...-|
T Consensus 229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 229 TKAMLINLILRDFLNNGEVDSASDFISKLEY--PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred hhHHHHHHHHHHHHccCcHHHHHHHHhcCcC--CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 3356677888999999999999999887751 211 1 12334578889999999999999888755433
No 274
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.91 E-value=1.2e+02 Score=29.35 Aligned_cols=65 Identities=8% Similarity=0.085 Sum_probs=42.5
Q ss_pred chHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038112 207 VTYNVMINGLCKCGRFDECLEMWDRMKKNER-EKDS---FTYCSFIHGLCKAGNVEGAERVYREMVESG 271 (625)
Q Consensus 207 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 271 (625)
..+|.+++.|...+.++.|..+..+..--.. .++. .-+..+++.+.-.+++.+|.+.+.......
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 4578888888888888888888887741100 0111 112234566677888888888888877653
No 275
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=60.38 E-value=26 Score=27.57 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=55.8
Q ss_pred hhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHccCCch
Q 038112 18 PHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQ--KCYCPEDVALSVIQAYGKNSMPD 90 (625)
Q Consensus 18 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 90 (625)
.+.++..+...++..|...++.- ..++..+...+..-.|.++++.+.+. ++..+..+.+..+..+...|-..
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 46667777777777777776665 45667777778899999999999988 77778888888888888888553
No 276
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=59.68 E-value=41 Score=28.44 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=17.7
Q ss_pred CchhhHHHHHHHHhcCChhHHHHHHHHH
Q 038112 169 NVVCYNILIDGFFKKGDYMRAKEIWERL 196 (625)
Q Consensus 169 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 196 (625)
+.......+..+.+.|+.++|.++|-+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 4444555566666777777777766654
No 277
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=59.67 E-value=62 Score=25.46 Aligned_cols=91 Identities=11% Similarity=-0.163 Sum_probs=61.5
Q ss_pred HHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCC----------------CC
Q 038112 9 LNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCY----------------CP 72 (625)
Q Consensus 9 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------------~~ 72 (625)
.-+|...|.+.+++-++.. -....+...-.-++-+..++..|...++.++...+. .+
T Consensus 40 ~I~LyyngEY~R~Lf~L~~-------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~D 112 (242)
T 3kae_A 40 SIVLYLNGEYTRALFHLHK-------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGD 112 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHT-------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTC
T ss_pred hhhhhhcchHhHHHHHHHh-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccch
Confidence 3566778888888876665 222333333444677889999999999999943321 22
Q ss_pred H-HHHHHHHHHHHccCCchHHHHHHHHhHHhhCCC
Q 038112 73 E-DVALSVIQAYGKNSMPDKALDVFQRMNEIFGCE 106 (625)
Q Consensus 73 ~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 106 (625)
. .-++.++..+...|+-++|+..|..-....+-.
T Consensus 113 kEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf 147 (242)
T 3kae_A 113 EEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLF 147 (242)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcccc
Confidence 2 345667788889999999999988654444433
No 278
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=59.07 E-value=60 Score=25.08 Aligned_cols=60 Identities=8% Similarity=0.029 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 038112 555 DKALEIWNHILEERLRPDI-ISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHIL 614 (625)
Q Consensus 555 ~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 614 (625)
+.+.++|..|...|+.-.. ..|...+..+...|++++|.++++.-++.+-.|-...-...
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~ 142 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQY 142 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 4489999999998877644 66777888889999999999999999998888865544433
No 279
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=53.67 E-value=86 Score=26.10 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 038112 521 DALQLYSNMKKRNCVPN-LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP 571 (625)
Q Consensus 521 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 571 (625)
++..+|..|...|+-.. ...|...+..+...|++.+|..+|+..++.+..|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44556666666555433 4445555566666666666666666666655555
No 280
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=51.38 E-value=87 Score=24.59 Aligned_cols=57 Identities=7% Similarity=0.095 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 038112 555 DKALEIWNHILEERLRPDI-ISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITW 611 (625)
Q Consensus 555 ~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 611 (625)
+.+.++|..|...|+.-.. ..|...+..+-..|++.+|.++|+.-++.+-.|-...-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~ 134 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQ 134 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 4477899999998877644 66777788888999999999999999998888865543
No 281
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=48.19 E-value=1.1e+02 Score=25.06 Aligned_cols=70 Identities=14% Similarity=0.032 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHCCCCcCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCH
Q 038112 257 VEGAERVYREMVESGIFVDAV-------TYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKV 326 (625)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 326 (625)
++.|+.+|+.+.+.-.-++.. .-...+..|.+.|.+++|.+++++.....+.+...-..|+..-.+...+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~ 164 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLA 164 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcc
Confidence 466777777666542111111 1112344567777788888887777665444444444454444444333
No 282
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=46.73 E-value=59 Score=25.43 Aligned_cols=53 Identities=9% Similarity=0.128 Sum_probs=33.7
Q ss_pred hcCChHHHHHHHHHHHHCCCCC--CHhHHHHHHH------HHHhcCChhhHHHHHHHHHhC
Q 038112 112 RKRQFEKAKRFLNSLWEKGLKP--DVYSYGTVIN------GLVKSGDLLGALAVFDEMFER 164 (625)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~ 164 (625)
..|+|-+|-++|+.+......+ ....|..+|+ ...+.|+...|..++.+....
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3456666666666666554334 4455666666 234678999999998888663
No 283
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=45.50 E-value=88 Score=24.43 Aligned_cols=54 Identities=15% Similarity=0.258 Sum_probs=34.0
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCC--ChhhHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 038112 216 LCKCGRFDECLEMWDRMKKNEREK--DSFTYCSFIH-G-----LCKAGNVEGAERVYREMVE 269 (625)
Q Consensus 216 ~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 269 (625)
+...|++-+|.++++.+-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344478888888888776654444 3445556665 2 2356777777777777654
No 284
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=45.41 E-value=2.4e+02 Score=30.08 Aligned_cols=110 Identities=10% Similarity=-0.009 Sum_probs=57.2
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCCh-HHHHHH
Q 038112 44 ILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQF-EKAKRF 122 (625)
Q Consensus 44 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~ 122 (625)
++..+...|.++-+.++. . -.+.++..-+.++++|...|++++|...|+++-....... ..... .....+
T Consensus 816 l~~~L~~~~~~~~a~eL~----~-~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~----~~~~~~~~~~~l 886 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----G-WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHT----SQFAVLREFQEI 886 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----G-GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSC----CSCGGGHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHH----h-hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCc----ccccchhhhhhc
Confidence 555566666666544322 2 2344555667788888888888888888887621100000 00000 111122
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112 123 LNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER 164 (625)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 164 (625)
+..... . .....-|..++..+-+.+.++.+.+.-+.+++.
T Consensus 887 l~~~e~-~-~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 887 AEKYHH-Q-NLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHTTT-C-SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCcccc-c-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 211110 0 112235666666666777777777666666654
No 285
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=44.89 E-value=1.7e+02 Score=26.06 Aligned_cols=68 Identities=10% Similarity=-0.019 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 038112 555 DKALEIWNHILEERLRPDI--ISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTT-ITWHILVRAVMNNG 622 (625)
Q Consensus 555 ~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 622 (625)
.+..++---+..-.+.|.. -+....+...++.+++..|..+.+++++.+-.++. ..-..++..|-+.+
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSMA 257 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Confidence 3344444334444455544 34556667778888888888888888875533332 34456666666654
No 286
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=43.85 E-value=1.1e+02 Score=32.50 Aligned_cols=49 Identities=22% Similarity=0.044 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcC
Q 038112 574 ISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTI----TWHILVRAVMNNG 622 (625)
Q Consensus 574 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g 622 (625)
..|.+++..+-+.+-++-++++.+.+++.-...|.. .|..+..+.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 367888888999999999999999998753233333 4555666555544
No 287
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=42.15 E-value=1.2e+02 Score=25.18 Aligned_cols=52 Identities=8% Similarity=0.043 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHccCCchHHHHHHHHhHHhhCCC
Q 038112 55 VHVSRILELIEIQKCYCPED-VALSVIQAYGKNSMPDKALDVFQRMNEIFGCE 106 (625)
Q Consensus 55 ~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 106 (625)
.++..+|..+...+...... .|...+..+...|++.+|..+|+.-.+.....
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 57778899888887664443 55577888888999999999999876654443
No 288
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=41.77 E-value=1.7e+02 Score=25.10 Aligned_cols=59 Identities=12% Similarity=0.044 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc-cCCHHHHHHHHHHHH
Q 038112 402 NSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCK-VERFGEAYSFVKEML 460 (625)
Q Consensus 402 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 460 (625)
..+....-+.+++++.......+.+.+...+..--|.+-.+|-. .|....+++++..+.
T Consensus 35 v~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissie 94 (261)
T 3ubw_A 35 VYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIE 94 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHH
Confidence 34455567778888888888888877766676666666666643 344455555555443
No 289
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=41.68 E-value=89 Score=21.96 Aligned_cols=11 Identities=36% Similarity=0.736 Sum_probs=4.4
Q ss_pred HhcCChhhHHH
Q 038112 217 CKCGRFDECLE 227 (625)
Q Consensus 217 ~~~g~~~~a~~ 227 (625)
...|++++|..
T Consensus 50 mNrG~Yq~Al~ 60 (115)
T 2uwj_G 50 ANQGRYQEALA 60 (115)
T ss_dssp HHTTCHHHHHG
T ss_pred HcchhHHHHHH
Confidence 33444444433
No 290
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=41.13 E-value=55 Score=25.68 Aligned_cols=70 Identities=9% Similarity=0.052 Sum_probs=45.1
Q ss_pred HHHHHHHHH-HHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC--CCCCCchhhHHHHHHHHhcCChhH
Q 038112 118 KAKRFLNSL-WEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER--GVETNVVCYNILIDGFFKKGDYMR 188 (625)
Q Consensus 118 ~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~ 188 (625)
.+...+.+. .+.|++.+. .-..++..+...++.-.|.++++.+.+. ++..+..|....+..+...|-..+
T Consensus 15 ~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 15 VLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 334333333 334655543 3455666677777788888888888877 666677777777777777775543
No 291
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=40.86 E-value=74 Score=30.66 Aligned_cols=57 Identities=4% Similarity=-0.194 Sum_probs=30.5
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHh
Q 038112 42 HHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRM 99 (625)
Q Consensus 42 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 99 (625)
..++........+..|...|..+.... |.+...++.++-.....|+.-+|.-.|-+.
T Consensus 156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rs 212 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHH
Confidence 344444444555556666666666654 235555666665555555555555444443
No 292
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=40.78 E-value=93 Score=21.92 Aligned_cols=11 Identities=18% Similarity=0.459 Sum_probs=4.3
Q ss_pred hcCChhhHHHH
Q 038112 218 KCGRFDECLEM 228 (625)
Q Consensus 218 ~~g~~~~a~~~ 228 (625)
..|++++|..+
T Consensus 52 NrG~Yq~Al~l 62 (116)
T 2p58_C 52 NRGDYASALQQ 62 (116)
T ss_dssp HTTCHHHHHHH
T ss_pred cchhHHHHHHh
Confidence 33444444333
No 293
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=40.66 E-value=64 Score=24.64 Aligned_cols=60 Identities=15% Similarity=0.217 Sum_probs=43.0
Q ss_pred ccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCc
Q 038112 29 TREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMP 89 (625)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (625)
++..|...++.- ..++..+...+..-.|.++++.+.+.++..+..+.+..+..+...|-.
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 333455555544 345555556677888999999998888777888888888888888854
No 294
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=39.96 E-value=1.2e+02 Score=23.30 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=31.5
Q ss_pred HhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038112 303 GRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNG 359 (625)
Q Consensus 303 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 359 (625)
...+...+..-..++..+...+..-.|.++++.+.+.++..+..|....+..+...|
T Consensus 19 ~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 19 KKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 334444555555555556555556666667776666655556656555555555444
No 295
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=37.84 E-value=1.7e+02 Score=24.09 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCCCcHHH--------HHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112 292 IKECFELWEVMGRKGCLNVVS--------YNILIRGLLENGKVDEAISIWELLREK 339 (625)
Q Consensus 292 ~~~a~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (625)
++.|+.+|+.+.+..+.+... -...+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 566777777776655321111 112344566677777777777766654
No 296
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=37.32 E-value=84 Score=24.19 Aligned_cols=62 Identities=10% Similarity=0.111 Sum_probs=43.3
Q ss_pred hccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCch
Q 038112 28 ATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPD 90 (625)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (625)
.++..|...++.- ..++..+...+..-.|.++++.+.+.++..+..+.+..+..+...|-..
T Consensus 17 ~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 17 SIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 3444454444444 3455666666778899999999998887778888888888888888543
No 297
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=35.48 E-value=69 Score=24.48 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=42.2
Q ss_pred hccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCc
Q 038112 28 ATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMP 89 (625)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (625)
.++..|...++.- ..++..+...+ ...|.++++.+.+.++..+..+.+..+..+...|-.
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 3444555555554 33444555555 788999999999888777888888888888887754
No 298
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=35.29 E-value=1.3e+02 Score=22.89 Aligned_cols=51 Identities=16% Similarity=0.053 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038112 309 NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNG 359 (625)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 359 (625)
.+..-..++..+...+..-.|.++++.+.+.++..+..|....+..+...|
T Consensus 20 ~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 20 ITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp CCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 333344444444444444455555555555544444444444444444433
No 299
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=34.83 E-value=3.7e+02 Score=27.07 Aligned_cols=17 Identities=6% Similarity=0.024 Sum_probs=13.9
Q ss_pred HhhcCChHHHHHHHHHH
Q 038112 583 LCSCSRMSDAFEFLNDA 599 (625)
Q Consensus 583 ~~~~g~~~~A~~~~~~~ 599 (625)
+++.|+++.|++.++++
T Consensus 548 ~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 548 LYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHTTCHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHhC
Confidence 46788999998888886
No 300
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=34.42 E-value=1.2e+02 Score=21.34 Aligned_cols=77 Identities=13% Similarity=0.051 Sum_probs=36.4
Q ss_pred ChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHH
Q 038112 150 DLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229 (625)
Q Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 229 (625)
..++|..+-+.+...+. ...+-..-+..+...|+|++|..+.+.. ..||...|..|. -.+.|..+++...+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALc--e~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN-----PWPALEPWFALC--EWHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC-----CCGGGHHHHHHH--HHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHH--HHhcccHHHHHHHH
Confidence 45566666555555432 1111111122344566666666544332 245555554442 34555555555555
Q ss_pred HHHHhC
Q 038112 230 DRMKKN 235 (625)
Q Consensus 230 ~~~~~~ 235 (625)
.++...
T Consensus 92 ~~la~s 97 (115)
T 2uwj_G 92 AGLGGS 97 (115)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 555443
No 301
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=33.78 E-value=33 Score=21.30 Aligned_cols=29 Identities=14% Similarity=0.306 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 038112 117 EKAKRFLNSLWEKGLKPDVYSYGTVINGL 145 (625)
Q Consensus 117 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (625)
++|...|-+|+...--+...+|...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45555555555543334445666666655
No 302
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=33.18 E-value=1.3e+02 Score=21.26 Aligned_cols=77 Identities=16% Similarity=0.225 Sum_probs=35.8
Q ss_pred ChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHH
Q 038112 150 DLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229 (625)
Q Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 229 (625)
..++|..+-+.+...+. ...+-..-+..+...|+|++|..+.+.. ..||...|..|. -.+.|..+++...+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALc--e~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL-----AYPDLEPWLALC--EYRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS-----CCGGGHHHHHHH--HHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHH--HHhcccHHHHHHHH
Confidence 45556555555555432 1111111122344556666666554433 245555554443 34455555555555
Q ss_pred HHHHhC
Q 038112 230 DRMKKN 235 (625)
Q Consensus 230 ~~~~~~ 235 (625)
.++...
T Consensus 93 ~~la~s 98 (116)
T 2p58_C 93 NRLARS 98 (116)
T ss_dssp HHHTTC
T ss_pred HHHHhC
Confidence 455433
No 303
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=32.72 E-value=1.5e+02 Score=22.00 Aligned_cols=61 Identities=10% Similarity=0.181 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 038112 209 YNVMINGLCKCGRFDECLEMWDRMKKNEREKDS---FTYCSFIHGLCKAGN--VEGAERVYREMVESGIF 273 (625)
Q Consensus 209 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 273 (625)
...++.-|...|+.++|.+.++++. .|.- .+...+..+.-+.++ .+....++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~----~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE----VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT----CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC----CCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3456777777888888888888775 2211 112222223323221 34556666666665544
No 304
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=31.92 E-value=1.6e+02 Score=25.14 Aligned_cols=14 Identities=7% Similarity=0.067 Sum_probs=6.0
Q ss_pred HHHhcCChhHHHHH
Q 038112 179 GFFKKGDYMRAKEI 192 (625)
Q Consensus 179 ~~~~~g~~~~a~~~ 192 (625)
..++.|+.+....+
T Consensus 11 ~A~~~g~~~~v~~L 24 (285)
T 1wdy_A 11 KAVQNEDVDLVQQL 24 (285)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHH
Confidence 33444554443333
No 305
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=31.78 E-value=1.3e+02 Score=26.74 Aligned_cols=231 Identities=10% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC
Q 038112 245 CSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENG 324 (625)
Q Consensus 245 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 324 (625)
..++.-|...|+.++|...++++......|.......-...=.+...-+.+-.++..+...-.+.......+...+....
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~ll~~ld 86 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLP 86 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q ss_pred C--------HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCC
Q 038112 325 K--------VDEAISIWELLREKNCNADSTTHGVLINGLCKNGY--LNKAIQILNEVEEGGEGRLADAASLVNRMDKHGC 394 (625)
Q Consensus 325 ~--------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 394 (625)
+ ++..-.++.++...++-|...............|. ...|..++. .+++.
T Consensus 87 Dl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~--------------------~~~~~ 146 (307)
T 2zu6_B 87 ELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLS--------------------MSKGG 146 (307)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHH--------------------TCC--
T ss_pred HhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhc--------------------ccccH
Q ss_pred CccHHHH----------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCH--HHHHHHH
Q 038112 395 KLNAYTC----------------NSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERF--GEAYSFV 456 (625)
Q Consensus 395 ~~~~~~~----------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~ 456 (625)
..-...| ..++.-|...|+.++|.+.++++..-... .......+..++-+.++. +....++
T Consensus 147 ~~~~~~WG~~~~~~~~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL 225 (307)
T 2zu6_B 147 KRKDSVWGSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLL 225 (307)
T ss_dssp --CCCSSCCCSTTSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHH
T ss_pred hHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHH
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHhccCC----HHHHHHHHHHHHh
Q 038112 457 KEMLEKGWKPDMITYSLLINGLCQSKK----IDMALKLCCQFLQ 496 (625)
Q Consensus 457 ~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~ 496 (625)
..+.+.|+-+.......+...+....+ ...|..++.++..
T Consensus 226 ~~L~~~~~ls~~q~~~Gf~~vl~~l~Dl~lDiP~A~~~la~~v~ 269 (307)
T 2zu6_B 226 KSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVE 269 (307)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHH
No 306
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=30.84 E-value=1.7e+02 Score=22.51 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=11.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 038112 281 AMIDGFCRAGKIKECFELWEVMG 303 (625)
Q Consensus 281 ~l~~~~~~~~~~~~a~~~~~~~~ 303 (625)
.++.-|...|+.++|...++++.
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHhC
Confidence 34444555555555555555543
No 307
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=30.81 E-value=84 Score=23.44 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChh
Q 038112 139 GTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYM 187 (625)
Q Consensus 139 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 187 (625)
..++..+...+..-.|.++++.+.+.++..+..|....+..+...|-..
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 4455666666777888999999888877777778777778877777543
No 308
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=30.10 E-value=1.9e+02 Score=22.40 Aligned_cols=16 Identities=13% Similarity=0.001 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhcCC
Q 038112 608 TITWHILVRAVMNNGA 623 (625)
Q Consensus 608 ~~~~~~l~~~~~~~g~ 623 (625)
......++..+.+.|.
T Consensus 130 ~~~~~K~~~~L~rrGF 145 (159)
T 3c1d_A 130 FSEKVKIQRFLLYRGY 145 (159)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCC
Confidence 3344455555555554
No 309
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=29.84 E-value=3.8e+02 Score=25.80 Aligned_cols=79 Identities=15% Similarity=-0.011 Sum_probs=59.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 038112 505 MYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLC 584 (625)
Q Consensus 505 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 584 (625)
....|+....-...++.|..+|.++... .|.+...|+.|+-.....|+.-+|.-.|-+.+.. ..|-..+...+...+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~-~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQL-VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHh-CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-CCCChhHHHHHHHHHH
Confidence 3344555555667789999999999886 4667889999999998889888888888777764 4566666677766654
Q ss_pred h
Q 038112 585 S 585 (625)
Q Consensus 585 ~ 585 (625)
+
T Consensus 232 ~ 232 (497)
T 1ya0_A 232 K 232 (497)
T ss_dssp H
T ss_pred H
Confidence 4
No 310
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.69 E-value=1.3e+02 Score=22.60 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038112 309 NVVSYNILIRGLLENG-KVDEAISIWELLREKNCNADSTTHGVLINGLCKNG 359 (625)
Q Consensus 309 ~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 359 (625)
.+..-..++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 16 ~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 16 VTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444444444 44556666666665555555555544444444333
No 311
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.57 E-value=1.4e+02 Score=22.46 Aligned_cols=58 Identities=9% Similarity=0.023 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCch
Q 038112 32 PGYAHSPHLFHHILRRLIDPK-LVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPD 90 (625)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (625)
.|...++.- ..++..+...+ ....|.++++.+.+.++..+..+.+..+..+...|-..
T Consensus 12 ~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 12 AGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp TTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred CCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 444455544 34555666666 78889999999998887778888888888888777543
No 312
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=29.46 E-value=47 Score=20.61 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=16.0
Q ss_pred cCChhHHHHHHHHHHhCCCCCCCc
Q 038112 183 KGDYMRAKEIWERLVMETSVYPNV 206 (625)
Q Consensus 183 ~g~~~~a~~~~~~~~~~~~~~~~~ 206 (625)
..+++.|...|..+...+.+||+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 457777777777776666566654
No 313
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=29.22 E-value=1.1e+02 Score=23.20 Aligned_cols=48 Identities=4% Similarity=0.008 Sum_probs=38.1
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCc
Q 038112 42 HHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMP 89 (625)
Q Consensus 42 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (625)
..++..+...+..-.|.++++.+.+.++..+..+.+..+..+...|-.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345666667777888999999999888777888888888888888854
No 314
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=28.83 E-value=1.6e+02 Score=25.19 Aligned_cols=86 Identities=15% Similarity=0.133 Sum_probs=38.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcC
Q 038112 283 IDGFCRAGKIKECFELWEVMGR-KGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTT--HGVLINGLCKNG 359 (625)
Q Consensus 283 ~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~ 359 (625)
+...+..|+.+-+..+++.... ....+....+.+. ..+..+......++.+.+.+.|..++... -...+......|
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 230 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 230 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 3344456666555544443111 1111222222222 23345555555566667777766554321 112233444566
Q ss_pred CHHHHHHHHH
Q 038112 360 YLNKAIQILN 369 (625)
Q Consensus 360 ~~~~a~~~~~ 369 (625)
+.+.+..+++
T Consensus 231 ~~~~v~~Ll~ 240 (285)
T 1wdy_A 231 HLGLVQRLLE 240 (285)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHh
Confidence 6665544443
No 315
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=28.38 E-value=2.7e+02 Score=23.47 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=11.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHH
Q 038112 212 MINGLCKCGRFDECLEMWDRMK 233 (625)
Q Consensus 212 l~~~~~~~g~~~~a~~~~~~~~ 233 (625)
-++.+....++++|.+++++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3455555555555555555443
No 316
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=28.16 E-value=2.9e+02 Score=23.82 Aligned_cols=139 Identities=11% Similarity=-0.006 Sum_probs=60.2
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhc
Q 038112 214 NGLCKCGRFDECLEMWDRMKKNEREKD---SFTYCSFIHGLCKAGNVEGAERVYREMVESGIFV-DAVTYNAMIDGFCRA 289 (625)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 289 (625)
...+..|+.+-+.-+++. |..++ ..-+...+...+..|+.+- .+.+++.|..+ +...-...+...+..
T Consensus 100 ~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~ 171 (285)
T 3kea_A 100 YYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSI----VSYFLSEIPSTFDLAILLSCIHITIKN 171 (285)
T ss_dssp HHHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHH----HHHHHTTSCTTCCCSTHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCccccccCCccHHHHHHHc
Confidence 344556665544444443 22222 1121223344445566543 33344444332 110223334455567
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038112 290 GKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILN 369 (625)
Q Consensus 290 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 369 (625)
|..+-+.-+++.-......+..-++..+...+..|+. ++.+.+.+.|..++.... .-...|+.+-+.-+++
T Consensus 172 g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~~Ll~ 242 (285)
T 3kea_A 172 GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANL-----ENVLLDDAEIAKMIIE 242 (285)
T ss_dssp TCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTG-----GGGTTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCCh-----hhhhcCCHHHHHHHHH
Confidence 7777666666554333322222222222333344543 344555666766655442 1123455554444444
No 317
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=27.39 E-value=88 Score=21.48 Aligned_cols=27 Identities=11% Similarity=-0.040 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHH
Q 038112 39 HLFHHILRRLIDPKLVVHVSRILELIE 65 (625)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 65 (625)
..+...+..+++.|+|++|++.++.+.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 344556667777777777766665554
No 318
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=27.38 E-value=1e+02 Score=23.55 Aligned_cols=46 Identities=11% Similarity=0.023 Sum_probs=21.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038112 313 YNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNG 359 (625)
Q Consensus 313 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 359 (625)
...++..+...+ .-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 21 R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 21 RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 333344443333 4455555555555554445555444444443333
No 319
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=27.25 E-value=76 Score=24.04 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChh
Q 038112 138 YGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYM 187 (625)
Q Consensus 138 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 187 (625)
-..++..+...++.-.|.++++.+.+.++..+..|....+..+...|-..
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34556666666677888899998888877777777777777777776543
No 320
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=26.89 E-value=1.1e+02 Score=22.74 Aligned_cols=47 Identities=6% Similarity=-0.039 Sum_probs=36.6
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCc
Q 038112 43 HILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMP 89 (625)
Q Consensus 43 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (625)
.++..+...+..-.|.++++.+.+.++..+..+.+..+..+...|-.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34555556677888999999998888777888888888888888854
No 321
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=26.26 E-value=2e+02 Score=21.34 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=12.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 038112 281 AMIDGFCRAGKIKECFELWEVMG 303 (625)
Q Consensus 281 ~l~~~~~~~~~~~~a~~~~~~~~ 303 (625)
.++.-|...|+.++|...++++.
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 34444555555555555555553
No 322
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.18 E-value=1.3e+02 Score=23.08 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038112 312 SYNILIRGLLENG-KVDEAISIWELLREKNCNADSTTHGVLINGLCKNG 359 (625)
Q Consensus 312 ~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 359 (625)
.-..++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 18 qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 18 PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3333444443333 34445555555555544444444444444444433
No 323
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=25.85 E-value=1.5e+02 Score=22.66 Aligned_cols=58 Identities=10% Similarity=0.085 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCch
Q 038112 32 PGYAHSPHLFHHILRRLIDPK-LVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPD 90 (625)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (625)
.|...++.- ..++..+...+ ..-.|.++++.+.+.++..+..+.+..+..+...|-..
T Consensus 11 ~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 11 AGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp TTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 344455544 34555666666 78889999999999888788888888888888888554
No 324
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=25.73 E-value=4.4e+02 Score=25.05 Aligned_cols=142 Identities=11% Similarity=0.023 Sum_probs=84.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 038112 446 VERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQL 525 (625)
Q Consensus 446 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 525 (625)
..+.+-|.++.. +.|++--...|..-...+...|++++|.++.-.... |+--+..+.+.+-.+=..-|+..--+.+
T Consensus 342 l~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 455665555433 334554555666667777888888888777655433 3444667766665544455667777788
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 038112 526 YSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDAL 600 (625)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (625)
|..+.+.| ..|..--..+++.-...|+.+-..+.+.+ ..+..+.+.-. ++ +..+..-|+.+|.+..
T Consensus 418 F~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e---~KL~~SEeLGD-lv----k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 418 FGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE---DKLECSEELGD-LV----KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHHHHH-HH----HHHCSHHHHHHHHHHC
T ss_pred HHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc---CCccccHHhHh-hh----hhcCHHHHHHHHHHcC
Confidence 88877775 44554445566666677776554444322 23555544322 22 3446677888887763
No 325
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=24.87 E-value=2.6e+02 Score=22.14 Aligned_cols=26 Identities=12% Similarity=-0.001 Sum_probs=15.5
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHH
Q 038112 540 TYNTLMDGLFKTGDCDKALEIWNHIL 565 (625)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (625)
.++.++..|...|+.++|+..+..-.
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 34555666666666666666655433
No 326
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.33 E-value=2.7e+02 Score=22.09 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=7.9
Q ss_pred HHHHHHHHHCCCCcC
Q 038112 261 ERVYREMVESGIFVD 275 (625)
Q Consensus 261 ~~~~~~~~~~~~~~~ 275 (625)
.++.+.+++.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 455555555554443
No 327
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=23.41 E-value=2.9e+02 Score=22.23 Aligned_cols=90 Identities=13% Similarity=0.032 Sum_probs=36.0
Q ss_pred CchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHH
Q 038112 169 NVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFI 248 (625)
Q Consensus 169 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 248 (625)
+...-...+.++...|+.+. ...+..+.. .++...-...+.++.+.|+.+ +...+..+.. .++..+-...+
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERA-VEPLIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGG-HHHHHHHTT----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHH-HHHHHHHHh----CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 44444444555555554322 222223332 233334444444444444432 3333333332 23444444444
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 038112 249 HGLCKAGNVEGAERVYREMV 268 (625)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~~ 268 (625)
.++...+. .++...+..+.
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHhCc-hhHHHHHHHHH
Confidence 44444443 33333344443
No 328
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=23.25 E-value=4.9e+02 Score=24.74 Aligned_cols=83 Identities=8% Similarity=0.042 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHH
Q 038112 255 GNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWE 334 (625)
Q Consensus 255 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 334 (625)
.+.+-|.++.. +.|++--...|..-...+...|++++|.++-....+.-..++.+.+.+-.+-...|+..-.+.+|.
T Consensus 343 ~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~ 419 (494)
T 1bpo_A 343 QNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFG 419 (494)
T ss_dssp CCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred CCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 44444444332 234443444555556666666777776666655554433455555444433333444445555555
Q ss_pred HHHHcC
Q 038112 335 LLREKN 340 (625)
Q Consensus 335 ~~~~~~ 340 (625)
.+.+.|
T Consensus 420 ~Ll~~g 425 (494)
T 1bpo_A 420 ILLDQG 425 (494)
T ss_dssp HHHHHS
T ss_pred HHhccC
Confidence 555554
No 329
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=22.55 E-value=1.2e+02 Score=24.61 Aligned_cols=35 Identities=20% Similarity=0.137 Sum_probs=15.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 038112 283 IDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILI 317 (625)
Q Consensus 283 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 317 (625)
+..|.+.|.+++|.++++..-...+.+...-..|+
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~ 158 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLL 158 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 33455666666666666665444333333333333
No 330
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=22.30 E-value=98 Score=20.25 Aligned_cols=26 Identities=15% Similarity=0.040 Sum_probs=17.0
Q ss_pred HHHHHHHccCChhHHHHHHHhhccCC
Q 038112 7 RLLNLLKAEKNPHTALALFDSATREP 32 (625)
Q Consensus 7 ~l~~~l~~~~~~~~A~~~~~~~~~~~ 32 (625)
.++..|..+|++++|...|-.|+.--
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc 47 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVC 47 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 35666777777777777666666544
No 331
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=22.22 E-value=3.1e+02 Score=22.08 Aligned_cols=142 Identities=15% Similarity=0.076 Sum_probs=63.0
Q ss_pred CCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHH
Q 038112 133 PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVM 212 (625)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 212 (625)
++...-...+..+.+.+... +...+..+... ++...-...+.++...++.+. ...+..+.. .++...-...
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~----~~~~~vr~~a 101 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALKD---EDAWVRRAAADALGQIGDERA-VEPLIKALK----DEDGWVRQSA 101 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT----CSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc----CCCHHHHHHH
Confidence 45555556666666666533 33333333332 355555555555655555333 233333332 2344444455
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 038112 213 INGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGK 291 (625)
Q Consensus 213 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (625)
+.++.+.++.+. ...+..+.. .++...-...+.++...++.+ +...+..+.. .++..+-...+.++.+.+.
T Consensus 102 ~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 102 AVALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 555555555332 333333332 344444444455555554432 3333333332 2344444444444444443
No 332
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.82 E-value=4.8e+02 Score=24.09 Aligned_cols=56 Identities=14% Similarity=0.083 Sum_probs=27.7
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCC----------------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 038112 475 INGLCQSKKIDMALKLCCQFLQKG----------------FTPDVTMYNILIHGLCSAGKVEDALQLYSNMK 530 (625)
Q Consensus 475 ~~~~~~~~~~~~A~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 530 (625)
+.......+.+++.+.+..+...- ...-......++..|...|+.++|..++++..
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 334445556666666666653310 01112233444455555566666666655554
No 333
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=21.13 E-value=3.9e+02 Score=22.80 Aligned_cols=149 Identities=10% Similarity=0.035 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHH
Q 038112 451 EAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAG-KVEDALQLYSNM 529 (625)
Q Consensus 451 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 529 (625)
.+...+..+.. .++..+-...+.++...++.+ +...+..+.+ .++..+-...+.++...| ....+...+..+
T Consensus 128 ~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~ 200 (280)
T 1oyz_A 128 KIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEM 200 (280)
T ss_dssp HHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 34444444433 345555555566666665532 4444444444 345544444455554444 234555555555
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHH
Q 038112 530 KKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTI 609 (625)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (625)
.+ .++..+-...+.++...|+. .+...+..+++. |+ +-...+.++.+.|. .++...+.++++.. ++..
T Consensus 201 l~---d~~~~vR~~A~~aL~~~~~~-~~~~~L~~~l~d---~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~~--~~~~ 268 (280)
T 1oyz_A 201 LQ---DKNEEVRIEAIIGLSYRKDK-RVLSVLCDELKK---NT--VYDDIIEAAGELGD-KTLLPVLDTMLYKF--DDNE 268 (280)
T ss_dssp TT---CSCHHHHHHHHHHHHHTTCG-GGHHHHHHHHTS---SS--CCHHHHHHHHHHCC-GGGHHHHHHHHTTS--SCCH
T ss_pred hc---CCCHHHHHHHHHHHHHhCCH-hhHHHHHHHhcC---cc--HHHHHHHHHHhcCc-hhhhHHHHHHHhcC--CCcH
Confidence 54 34666666677777777754 344444455542 33 23344556666676 36777777776432 4444
Q ss_pred HHHHHHHHH
Q 038112 610 TWHILVRAV 618 (625)
Q Consensus 610 ~~~~l~~~~ 618 (625)
.....+.++
T Consensus 269 ~~~~~~~~l 277 (280)
T 1oyz_A 269 IITSAIDKL 277 (280)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444443
No 334
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.01 E-value=3.4e+02 Score=22.06 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112 292 IKECFELWEVMGRKGCLNV-----VSYNILIRGLLENGKVDEAISIWELLREK 339 (625)
Q Consensus 292 ~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (625)
++.|+.+|+.+.+..+.-. ..-...+..|.+.|.+++|.+++++....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 4455555555554432100 01123345677777777777777776554
No 335
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=20.71 E-value=5.4e+02 Score=24.29 Aligned_cols=29 Identities=14% Similarity=0.073 Sum_probs=15.1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038112 396 LNAYTCNSLMNGFIQASKLENAIFLFKEMSR 426 (625)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 426 (625)
.+......++.. ..|+...+..+++.+..
T Consensus 192 i~~~al~~L~~~--~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 192 LPDETRRAIAEL--VNGDARRALNTLEMMAD 220 (447)
T ss_dssp CCHHHHHHHHHH--HCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--CCCCHHHHHHHHHHHHH
Confidence 344444444443 35666666666666543
No 336
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=20.49 E-value=2e+02 Score=19.29 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=12.1
Q ss_pred HHccCChhHHHHHHHHHHH
Q 038112 548 LFKTGDCDKALEIWNHILE 566 (625)
Q Consensus 548 ~~~~g~~~~A~~~~~~~~~ 566 (625)
+-+.|++++|+.+|.+.++
T Consensus 29 ~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 29 ADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 4556677777666666554
No 337
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=20.42 E-value=1e+02 Score=20.53 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=19.9
Q ss_pred HHHHHHHHccCCchHHHHHHHHhHH
Q 038112 77 LSVIQAYGKNSMPDKALDVFQRMNE 101 (625)
Q Consensus 77 ~~l~~~~~~~~~~~~A~~~~~~~~~ 101 (625)
..+++-|+-.|+|+.|..+|+.+.+
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4577788888899999988887744
No 338
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.24 E-value=1.9e+02 Score=18.96 Aligned_cols=31 Identities=10% Similarity=-0.060 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038112 591 DAFEFLNDALCRGILPTTITWHILVRAVMNN 621 (625)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 621 (625)
.+.++++.+.+.+...+..|..-.+..+.+.
T Consensus 35 s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 35 SAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 3444444444443333444444444444433
No 339
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=20.11 E-value=5e+02 Score=23.63 Aligned_cols=231 Identities=9% Similarity=-0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCC
Q 038112 314 NILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHG 393 (625)
Q Consensus 314 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 393 (625)
..++.-|...++.++|...++.+......+.......-...-.+....+.+-.++. .+. .+
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs------------------~L~-~~ 118 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLS------------------DLC-GT 118 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHH------------------TTT-TT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHH------------------HHH-hC
Q ss_pred CCccHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 038112 394 CKLNAYTCNSLMNGFIQASK--------LENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWK 465 (625)
Q Consensus 394 ~~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 465 (625)
+-+.......+...+....+ ++..-.++.++...++-|-.......... ....+.+.++.... +-
T Consensus 119 ~ls~~~i~~gf~~lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~-----~~~~~~~~l~~a~~--~L 191 (358)
T 3eiq_C 119 VMSTNDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTV-----DCVQARAALDKATV--LL 191 (358)
T ss_dssp SCCHHHHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC--------CCHHHHHHHHHHHH--HH
T ss_pred CCCHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcc-----cchHHHHHHHHHHH--HH
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038112 466 PDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLM 545 (625)
Q Consensus 466 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 545 (625)
-.......+-+.+...+......++-+++.. ++.-|...|+.++|...++++..- .--...+...+.
T Consensus 192 ~~~~~~~~~~~~WG~g~~~~~veelkkki~~------------lL~EY~~s~D~~EA~~ci~EL~~p-~fhhe~V~~av~ 258 (358)
T 3eiq_C 192 SMSKGGKRKDSVWGSGGGQQPVNHLVKEIDM------------LLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIV 258 (358)
T ss_dssp TC---------CCCCCCSSSCHHHHHHHHHH------------HHHHHHHHCCHHHHHHHHHHHCCT-TCHHHHHHHHHH
T ss_pred hccchHHHHHHhcCCCCCCccHHHHHHHHHH------------HHHHhccCCCHHHHHHHHHHccCC-cchHHHHHHHHH
Q ss_pred HHHHccC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038112 546 DGLFKTG--DCDKALEIWNHILEERLRPDIISYNITLKGL 583 (625)
Q Consensus 546 ~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 583 (625)
.+.-+.+ ..+....++..+...|+-+.......+...+
T Consensus 259 ~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 259 MVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
No 340
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.04 E-value=1.2e+02 Score=18.32 Aligned_cols=36 Identities=8% Similarity=0.296 Sum_probs=19.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCC--hHHHHHHHHHH
Q 038112 559 EIWNHILEERLRPDIISYNITLKGLCSCSR--MSDAFEFLNDA 599 (625)
Q Consensus 559 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~ 599 (625)
+.++.+++.|++++ ....++.+.|. .+.|++++.+|
T Consensus 11 qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 11 QMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHh
Confidence 34455555555442 22334444555 77777777777
Done!