BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038113
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 133 bits (334), Expect = 3e-32, Method: Composition-based stats.
Identities = 58/112 (51%), Positives = 72/112 (64%)
Query: 1 MFQNVAKGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSK 60
MF V KGDAI++KWI HDWSDEHCLKL K CY ++P G VI+ E ILP P+ +K
Sbjct: 255 MFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATK 314
Query: 61 IISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFESFICNLWVMEFYK 112
++ D LM+ NPGGKERT+ E L +GF G + S N +VMEF K
Sbjct: 315 VVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 128 bits (321), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 74/112 (66%)
Query: 1 MFQNVAKGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSK 60
MF ++ K DA++MKWI HDWSDEHCLK K CY+++P +G VI+ E ILP P++ +K
Sbjct: 252 MFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATK 311
Query: 61 IISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFESFICNLWVMEFYK 112
+ DV+M+ NPGGKERT+ E L GAGF G + N ++MEF K
Sbjct: 312 GVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFLK 363
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 123 bits (308), Expect = 3e-29, Method: Composition-based stats.
Identities = 52/112 (46%), Positives = 69/112 (61%)
Query: 1 MFQNVAKGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSK 60
MF+ V GD I MKWILHDWSD+HC L K CY ++P G V++V+ ILP PE S+
Sbjct: 253 MFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQ 312
Query: 61 IISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFESFICNLWVMEFYK 112
+ D++M+ NPGG+ER + E L GAGF G++ N W +EF K
Sbjct: 313 GVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
Query: 1 MFQNVAKGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSK 60
MF +V +GDA+ +K + H+WSDE C++ C+K++ +G VIIVE ILP+ P T SK
Sbjct: 261 MFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESK 320
Query: 61 IISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFESFICN-LWVMEFYK 112
++S D LM GG+ERT+ + L +GF + N L VMEFYK
Sbjct: 321 LVSTLDNLMFI-TVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 82.0 bits (201), Expect = 8e-17, Method: Composition-based stats.
Identities = 45/112 (40%), Positives = 64/112 (57%), Gaps = 2/112 (1%)
Query: 2 FQNVAKGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKI 61
F +V +GDA +K + H+WSDE C++ C+K++ +G VIIVE ILP+ P T SK+
Sbjct: 262 FASVPQGDAXILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKL 321
Query: 62 ISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFESFICN-LWVMEFYK 112
+S D L GG+ERT+ + L +GF + N L V EFYK
Sbjct: 322 VSTLDNLXFI-TVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVXEFYK 372
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 61/100 (61%), Gaps = 4/100 (4%)
Query: 1 MFQNVAKGDAIYMKWILHDWSDEHCLKLFKKCYKSIP---KDGMVIIVETILPKLPETRT 57
MF+++ DA+ +KW+LHDW+DE LK+ K ++I KDG VII++ + + + R
Sbjct: 244 MFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRG 303
Query: 58 LSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIR 97
L+++ D++M+T GKERTK E L+ AGF +
Sbjct: 304 LTELQLDYDLVMLTMFL-GKERTKQEWEKLIYDAGFSSYK 342
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 61/100 (61%), Gaps = 4/100 (4%)
Query: 1 MFQNVAKGDAIYMKWILHDWSDEHCLKLFKKCYKSIP---KDGMVIIVETILPKLPETRT 57
MF+++ DA+ +KW+LHDW+DE LK+ K ++I KDG VII++ + + + R
Sbjct: 245 MFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRG 304
Query: 58 LSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIR 97
L+++ D++M+T GKERTK E L+ AGF +
Sbjct: 305 LTELQLDYDLVMLTMFL-GKERTKQEWEKLIYDAGFSSYK 343
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 61/100 (61%), Gaps = 4/100 (4%)
Query: 1 MFQNVAKGDAIYMKWILHDWSDEHCLKLFKKCYKSIP---KDGMVIIVETILPKLPETRT 57
MF+++ DA+ +KW+LHDW+DE LK+ K ++I KDG VII++ + + + R
Sbjct: 241 MFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRG 300
Query: 58 LSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIR 97
L+++ D++M+T GKERTK E L+ AGF +
Sbjct: 301 LTELQLDYDLVMLTMFL-GKERTKQEWEKLIYDAGFSSYK 339
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 64/114 (56%), Gaps = 5/114 (4%)
Query: 1 MFQNVAKGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKD---GMVIIVETILPKLPETRT 57
MF +V K DA+ +K +LHDW+D+ C+K+ KKC +++ D G VI+++ ++ + +
Sbjct: 245 MFISVPKADAVLLKAVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVIDMVINEKKDENQ 304
Query: 58 LSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFESFICNLWVMEFY 111
L++I +V + N GKER + E L AGF + F + ++E Y
Sbjct: 305 LTQIKLLMNVTISCVN--GKERNEEEWKKLFIEAGFQDYKISPFTGLMSLIEIY 356
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 5/114 (4%)
Query: 1 MFQNVAKGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKD---GMVIIVETILPKLPETRT 57
MF ++ DA+ +K+ILH+W+D+ CL++ KKC +++ D G V I++ ++ K +
Sbjct: 240 MFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQ 299
Query: 58 LSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFESFICNLWVMEFY 111
+++I DV M N GKER + E L AGF + L ++E Y
Sbjct: 300 VTQIKLLMDVNMACLN--GKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 64.7 bits (156), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Query: 2 FQNVAKGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKD---GMVIIVETILPKLPETRTL 58
F ++ DA+ +K+ILH+W+D+ CL++ KKC +++ D G V I++ ++ K + +
Sbjct: 241 FTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDXVIDKKKDENQV 300
Query: 59 SKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFESFICNLWVMEFY 111
++I DV N GKER + E L AGF + L ++E Y
Sbjct: 301 TQIKLLXDVNXACLN--GKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 47.0 bits (110), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 2 FQNVAKGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKI 61
+ V D +K ILH+W DE +++ C + P G V++++ ++P+ + SK
Sbjct: 242 LREVPHADVHVLKRILHNWGDEDSVRILTNCRRVXPAHGRVLVIDAVVPEGNDAHQ-SK- 299
Query: 62 ISQGDVLMMTQNPGGKERTKHELMTLVTGAGF 93
+ D + G+ERT EL L T AG
Sbjct: 300 --EXDFXXLAART-GQERTAAELEPLFTAAGL 328
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 7 KGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGD 66
+ D + +LHDW+D C L ++ Y + G ++++E++L + L+++ S
Sbjct: 244 EADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYS--- 300
Query: 67 VLMMTQNPGGKERTKHELMTLVTGAGFGGIRFE 99
L M G+ERT L++ AGF +F+
Sbjct: 301 -LNMLVQTEGQERTPTHYHMLLSSAGFRDFQFK 332
>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I53|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I58|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I58|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I5U|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I5U|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I64|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
pdb|3I64|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
Length = 332
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 13 MKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQ 72
+ +LHDW D + + ++C ++ G+V+++E + + G L M
Sbjct: 241 LSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGD--------EHAGTGMDLRMLT 292
Query: 73 NPGGKERTKHELMTLVTGAGFGGIRFESFICNLWVME 109
GGKER+ EL L AG +R I + ++E
Sbjct: 293 YFGGKERSLAELGELAAQAGL-AVRAAHPISYVSIVE 328
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 2 FQNVAKGDAIYM-KWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSK 60
F+ + G +Y+ K +LHDW D+ +++ ++ + D +++++ ++ + P TL
Sbjct: 262 FETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAXKPDSRLLVIDNLIDERPAASTLFV 321
Query: 61 IISQGDVLMMTQNPGGKERTKHELMTLVTGAGF 93
+ GG ER++ E L+ +G
Sbjct: 322 DLLL------LVLVGGAERSESEFAALLEKSGL 348
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETI-LPKLPETRTLSKIISQGD 66
D + + ++L +WSDE L + + C +++ G +++++ + R S ++ D
Sbjct: 249 ADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLL---D 305
Query: 67 VLMMTQNPGGKERTKHELMTLVTGAGFG 94
+ M+T GG+ RT+ E++ L AG
Sbjct: 306 LRMLTFM-GGRVRTRDEVVDLAGSAGLA 332
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETI-LPKLPETRTLSKIISQGD 66
D + + ++L +WSDE L + + C +++ G +++++ + R S ++ D
Sbjct: 249 ADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLL---D 305
Query: 67 VLMMTQNPGGKERTKHELMTLVTGAGFG 94
+ +T GG+ RT+ E++ L AG
Sbjct: 306 LRXLTFX-GGRVRTRDEVVDLAGSAGLA 332
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 1 MFQNV-AKGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVE-TILPKLPETRTL 58
M Q V + GD + I+ D + L+L C +++ DG V+++E TI P
Sbjct: 226 MLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEP----- 280
Query: 59 SKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFG 94
S + DV + G+ RT E++ L+ GF
Sbjct: 281 SPMSVLWDVHLFMAC-AGRHRTTEEVVDLLGRGGFA 315
>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW2|B Chain B, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW3|A Chain A, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
pdb|1TW3|B Chain B, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
Length = 360
Score = 33.1 bits (74), Expect = 0.039, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 7 KGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGD 66
K DAI + ++L +W D +++ +C +++ G ++I E L E + ++ ++ D
Sbjct: 249 KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER--DDLHEN-SFNEQFTELD 305
Query: 67 VLMMTQNPGGKERTKHELMTLVTGAGF 93
+ M+ GG RT+ + L AG
Sbjct: 306 LRMLV-FLGGALRTREKWDGLAASAGL 331
>pdb|2EX4|A Chain A, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
pdb|2EX4|B Chain B, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
Length = 241
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 9/40 (22%), Positives = 26/40 (65%)
Query: 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETI 48
D I+++W++ +D+H + ++C S+ +G+++I + +
Sbjct: 148 DVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM 187
>pdb|3DP7|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase From
Bacteroides Vulgatus Atcc 8482
pdb|3DP7|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 363
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETI 48
DA++M L +S+E + + + +SI KD V I+ET+
Sbjct: 250 DAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETL 289
>pdb|2CFR|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase
Length = 298
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 39 DGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIR- 97
DG++ E +P PE L ++ G + N R + EL GFGG+R
Sbjct: 29 DGVLWNGERAVPGAPEL--LERLARAGKAALFVSN--NSRRARPELALRFARLGFGGLRA 84
Query: 98 ---FESFICNLWVM 108
F S +C ++
Sbjct: 85 EQLFSSALCAARLL 98
>pdb|2OYC|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
pdb|2P27|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
With Mg2+ At 1.9 A Resolution
pdb|2P69|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
With Plp
Length = 306
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 39 DGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIR- 97
DG++ E +P PE L ++ G + N R + EL GFGG+R
Sbjct: 29 DGVLWNGERAVPGAPEL--LERLARAGKAALFVSN--NSRRARPELALRFARLGFGGLRA 84
Query: 98 ---FESFICNLWVM 108
F S +C ++
Sbjct: 85 EQLFSSALCAARLL 98
>pdb|2CFS|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase
pdb|2CFT|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase With Its Substrate
Length = 298
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 39 DGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIR- 97
DG++ E +P PE L ++ G + N R + EL GFGG+R
Sbjct: 29 DGVLWNGERAVPGAPEL--LERLARAGKAALFVSN--NSRRARPELALRFARLGFGGLRA 84
Query: 98 ---FESFICNLWVM 108
F S +C ++
Sbjct: 85 EQLFSSALCAARLL 98
>pdb|3G07|A Chain A, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|B Chain B, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|C Chain C, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|D Chain D, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|E Chain E, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|F Chain F, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
Length = 292
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/49 (22%), Positives = 26/49 (53%)
Query: 14 KWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKII 62
KW+ +W DE + F++ Y+ + G++++ + +TL++ I
Sbjct: 188 KWVHLNWGDEGLKRXFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETI 236
>pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 25.4 bits (54), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVE 46
D IY + + S E+ KLF+KCYK + G ++I +
Sbjct: 122 DLIYSRDAILHLSLENKNKLFQKCYKWLKPTGTLLITD 159
>pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ7|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ8|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sinefungin And Po4
pdb|3UJ9|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphocholine
pdb|3UJA|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphoethanolamine
pdb|3UJB|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|3UJB|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|4FGZ|A Chain A, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
pdb|4FGZ|B Chain B, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
Length = 266
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVE 46
D IY + + S E+ KLF+KCYK + G ++I +
Sbjct: 122 DLIYSRDAILHLSLENKNKLFQKCYKWLKPTGTLLITD 159
>pdb|3UJ6|A Chain A, Semet Phosphoethanolamine Methyltransferase From
Plasmodium Falciparum In Complex With Sam And Po4
Length = 266
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVE 46
D IY + + S E+ KLF+KCYK + G ++I +
Sbjct: 122 DLIYSRDAILHLSLENKNKLFQKCYKWLKPTGTLLITD 159
>pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVE 46
D IY + + S E+ KLF+KCYK + G ++I +
Sbjct: 122 DLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITD 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,615,880
Number of Sequences: 62578
Number of extensions: 128372
Number of successful extensions: 413
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 377
Number of HSP's gapped (non-prelim): 30
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)