Query 038113
Match_columns 112
No_of_seqs 166 out of 1045
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 07:43:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 99.9 9.2E-27 2E-31 162.3 9.1 112 1-112 230-342 (342)
2 PF00891 Methyltransf_2: O-met 99.9 1.8E-24 3.9E-29 146.6 7.3 88 1-89 152-241 (241)
3 TIGR02716 C20_methyl_CrtF C-20 99.7 1E-16 2.2E-21 112.2 9.8 96 1-99 208-305 (306)
4 PF05891 Methyltransf_PK: AdoM 99.3 2.6E-12 5.5E-17 85.5 6.0 78 9-100 124-201 (218)
5 TIGR00740 methyltransferase, p 99.3 2.8E-12 6.1E-17 86.9 3.0 105 6-110 121-237 (239)
6 PLN02233 ubiquinone biosynthes 99.2 2.1E-10 4.5E-15 79.0 10.2 98 9-110 147-259 (261)
7 PTZ00098 phosphoethanolamine N 99.2 4.5E-10 9.7E-15 77.4 9.6 91 4-102 112-204 (263)
8 PLN02232 ubiquinone biosynthes 99.2 2.7E-10 5.8E-15 73.1 7.9 91 9-103 46-150 (160)
9 PF01209 Ubie_methyltran: ubiE 99.1 2.4E-11 5.3E-16 82.4 2.4 105 4-112 111-233 (233)
10 PRK15451 tRNA cmo(5)U34 methyl 99.0 7.4E-10 1.6E-14 75.6 6.8 93 6-98 124-228 (247)
11 COG2226 UbiE Methylase involve 99.0 4.5E-09 9.7E-14 71.4 10.5 103 4-111 114-236 (238)
12 PRK00216 ubiE ubiquinone/menaq 99.0 6.2E-09 1.4E-13 69.9 10.6 99 9-112 123-238 (239)
13 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 8.5E-09 1.8E-13 68.6 10.3 100 8-112 107-223 (223)
14 PF13489 Methyltransf_23: Meth 99.0 1.5E-09 3.3E-14 68.7 6.4 81 9-97 80-160 (161)
15 TIGR02752 MenG_heptapren 2-hep 99.0 4.9E-09 1.1E-13 70.5 8.9 99 9-112 116-231 (231)
16 PF06080 DUF938: Protein of un 99.0 6.2E-09 1.3E-13 69.0 9.0 101 9-112 104-204 (204)
17 PLN02490 MPBQ/MSBQ methyltrans 99.0 6.2E-09 1.3E-13 74.1 9.6 79 9-102 180-258 (340)
18 PRK11873 arsM arsenite S-adeno 98.9 1.2E-08 2.7E-13 70.3 9.5 83 9-100 148-230 (272)
19 PRK15068 tRNA mo(5)U34 methylt 98.9 2.3E-08 5E-13 70.8 9.8 83 9-101 191-275 (322)
20 TIGR00452 methyltransferase, p 98.9 1.8E-08 3.9E-13 71.1 9.0 83 9-101 190-274 (314)
21 PLN02336 phosphoethanolamine N 98.9 1.8E-08 3.9E-13 74.4 9.4 87 4-101 327-415 (475)
22 PLN02244 tocopherol O-methyltr 98.8 4.5E-08 9.8E-13 69.8 10.0 95 4-101 181-279 (340)
23 smart00828 PKS_MT Methyltransf 98.7 9.4E-08 2E-12 64.0 8.3 78 9-102 69-146 (224)
24 PLN02396 hexaprenyldihydroxybe 98.7 6.5E-08 1.4E-12 68.5 6.8 91 9-101 200-290 (322)
25 KOG1540 Ubiquinone biosynthesi 98.7 8.2E-08 1.8E-12 65.6 6.9 88 4-97 172-278 (296)
26 PRK14103 trans-aconitate 2-met 98.6 2.6E-07 5.5E-12 63.3 8.0 88 8-97 90-181 (255)
27 PRK11036 putative S-adenosyl-L 98.6 1.3E-07 2.9E-12 64.7 6.5 93 9-104 114-211 (255)
28 PRK08317 hypothetical protein; 98.6 4.1E-07 8.9E-12 60.9 8.6 87 9-100 89-176 (241)
29 PLN02336 phosphoethanolamine N 98.6 2.9E-07 6.3E-12 68.1 7.4 75 9-97 105-179 (475)
30 PRK11207 tellurite resistance 98.6 9E-07 2E-11 58.6 9.0 72 9-98 97-168 (197)
31 KOG4300 Predicted methyltransf 98.5 1.3E-06 2.8E-11 58.3 8.5 89 9-104 147-236 (252)
32 TIGR00477 tehB tellurite resis 98.4 3.2E-06 7E-11 55.8 9.1 74 8-99 95-168 (195)
33 PF08241 Methyltransf_11: Meth 98.4 2.3E-07 4.9E-12 53.5 2.5 39 4-44 55-95 (95)
34 KOG2361 Predicted methyltransf 98.4 1.3E-06 2.7E-11 59.3 6.2 88 9-99 146-236 (264)
35 PRK04266 fibrillarin; Provisio 98.3 5E-06 1.1E-10 56.3 8.3 77 9-111 143-224 (226)
36 PRK05134 bifunctional 3-demeth 98.3 3.2E-06 6.8E-11 57.0 7.3 88 9-100 116-205 (233)
37 PF04672 Methyltransf_19: S-ad 98.3 7.4E-07 1.6E-11 61.4 3.5 80 10-97 153-233 (267)
38 TIGR01983 UbiG ubiquinone bios 98.3 3.6E-06 7.7E-11 56.3 6.8 89 8-100 113-203 (224)
39 PF08003 Methyltransf_9: Prote 98.3 6.8E-06 1.5E-10 57.7 7.7 89 3-101 175-268 (315)
40 PF02353 CMAS: Mycolic acid cy 98.2 2.2E-06 4.7E-11 59.6 5.1 90 9-101 129-218 (273)
41 smart00138 MeTrc Methyltransfe 98.2 2.5E-06 5.4E-11 59.0 4.7 39 9-47 205-243 (264)
42 TIGR03438 probable methyltrans 98.2 9.8E-06 2.1E-10 56.9 7.7 36 9-44 140-175 (301)
43 PRK12335 tellurite resistance 98.2 2.2E-05 4.7E-10 54.8 8.7 73 9-99 186-258 (287)
44 PRK05785 hypothetical protein; 98.1 3.6E-05 7.8E-10 52.0 8.6 104 4-112 105-224 (226)
45 PF08242 Methyltransf_12: Meth 98.1 4.2E-06 9E-11 49.1 2.9 32 9-42 68-99 (99)
46 PRK11705 cyclopropane fatty ac 98.0 4.3E-05 9.4E-10 55.5 7.9 85 9-102 230-314 (383)
47 PRK06202 hypothetical protein; 98.0 3.6E-05 7.8E-10 51.9 6.6 85 9-101 131-223 (232)
48 PRK10611 chemotaxis methyltran 97.9 1.2E-05 2.6E-10 56.3 4.1 38 9-46 225-262 (287)
49 PRK06922 hypothetical protein; 97.9 1.8E-05 3.8E-10 60.7 5.0 45 8-52 488-543 (677)
50 TIGR00537 hemK_rel_arch HemK-r 97.9 0.00019 4E-09 46.6 9.3 76 8-112 83-177 (179)
51 TIGR02072 BioC biotin biosynth 97.9 6E-05 1.3E-09 50.4 6.9 76 9-99 100-175 (240)
52 PF01739 CheR: CheR methyltran 97.9 1.1E-05 2.3E-10 53.6 2.6 38 9-46 138-175 (196)
53 PF05401 NodS: Nodulation prot 97.9 1.7E-05 3.7E-10 52.5 3.5 76 5-101 102-180 (201)
54 PRK07580 Mg-protoporphyrin IX 97.9 0.00012 2.5E-09 49.1 7.6 87 9-102 129-216 (230)
55 PLN02585 magnesium protoporphy 97.9 8.8E-05 1.9E-09 52.6 7.2 87 9-101 214-300 (315)
56 TIGR02021 BchM-ChlM magnesium 97.8 0.00011 2.4E-09 49.1 7.3 87 8-102 120-208 (219)
57 PF11968 DUF3321: Putative met 97.8 0.00022 4.7E-09 47.9 7.9 79 1-101 92-182 (219)
58 PF05148 Methyltransf_8: Hypot 97.8 0.00014 3E-09 48.7 6.6 79 4-112 117-197 (219)
59 PF13847 Methyltransf_31: Meth 97.7 1.2E-05 2.6E-10 50.8 1.4 79 8-92 74-152 (152)
60 COG2230 Cfa Cyclopropane fatty 97.7 0.00012 2.6E-09 51.1 6.3 88 8-102 138-225 (283)
61 PRK10258 biotin biosynthesis p 97.7 0.0002 4.4E-09 48.8 7.3 78 9-95 105-182 (251)
62 PRK01683 trans-aconitate 2-met 97.7 0.00031 6.7E-09 48.0 8.0 83 8-95 94-182 (258)
63 PF12847 Methyltransf_18: Meth 97.7 5.9E-05 1.3E-09 44.9 4.0 39 8-46 71-111 (112)
64 COG2227 UbiG 2-polyprenyl-3-me 97.7 5.1E-05 1.1E-09 51.6 4.0 86 9-101 126-216 (243)
65 PTZ00146 fibrillarin; Provisio 97.7 0.0013 2.7E-08 46.3 10.6 79 8-110 203-284 (293)
66 COG1352 CheR Methylase of chem 97.6 0.00013 2.8E-09 50.7 5.1 42 5-46 199-241 (268)
67 PF12147 Methyltransf_20: Puta 97.6 0.00091 2E-08 46.9 9.2 98 9-112 211-311 (311)
68 PLN03075 nicotianamine synthas 97.6 7.5E-05 1.6E-09 52.4 3.9 37 9-46 197-233 (296)
69 KOG1270 Methyltransferases [Co 97.6 9.7E-05 2.1E-09 50.9 3.6 92 8-101 159-250 (282)
70 TIGR03840 TMPT_Se_Te thiopurin 97.5 0.0013 2.9E-08 44.1 8.8 71 9-99 115-186 (213)
71 KOG3045 Predicted RNA methylas 97.4 0.0016 3.6E-08 45.1 7.8 74 9-112 230-303 (325)
72 COG4798 Predicted methyltransf 97.4 0.0009 2E-08 44.5 6.2 82 5-101 119-206 (238)
73 PF03848 TehB: Tellurite resis 97.4 0.00052 1.1E-08 45.5 5.0 76 5-98 91-167 (192)
74 PRK13255 thiopurine S-methyltr 97.3 0.0029 6.2E-08 42.7 8.5 72 9-100 118-190 (218)
75 PF13649 Methyltransf_25: Meth 97.3 0.00012 2.7E-09 43.0 1.7 32 9-40 69-101 (101)
76 TIGR03587 Pse_Me-ase pseudamin 97.3 0.001 2.2E-08 44.3 6.0 47 3-51 99-147 (204)
77 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.3 0.00026 5.7E-09 48.8 3.1 82 5-100 155-239 (256)
78 TIGR02081 metW methionine bios 97.2 0.0016 3.4E-08 42.9 6.2 88 8-101 76-168 (194)
79 PRK14968 putative methyltransf 96.9 0.024 5.3E-07 36.5 9.8 59 25-112 127-188 (188)
80 PF05219 DREV: DREV methyltran 96.9 0.0043 9.4E-08 42.9 6.3 82 9-102 153-242 (265)
81 PRK00517 prmA ribosomal protei 96.9 0.019 4.1E-07 39.3 9.5 68 8-109 180-247 (250)
82 PRK08287 cobalt-precorrin-6Y C 96.9 0.005 1.1E-07 40.2 6.3 59 8-100 98-156 (187)
83 COG4627 Uncharacterized protei 96.8 0.00046 1E-08 44.2 0.6 40 8-47 48-87 (185)
84 cd02440 AdoMet_MTases S-adenos 96.7 0.0052 1.1E-07 34.8 4.9 37 8-45 67-103 (107)
85 TIGR03534 RF_mod_PrmC protein- 96.7 0.011 2.5E-07 39.9 7.2 47 26-102 197-243 (251)
86 PRK13256 thiopurine S-methyltr 96.7 0.0093 2E-07 40.5 6.6 43 9-51 126-168 (226)
87 PF05724 TPMT: Thiopurine S-me 96.3 0.012 2.5E-07 39.8 5.2 72 9-100 118-190 (218)
88 PRK15001 SAM-dependent 23S rib 96.2 0.014 3.1E-07 42.5 5.5 38 9-46 300-340 (378)
89 PRK09489 rsmC 16S ribosomal RN 96.2 0.015 3.3E-07 41.8 5.5 39 9-47 263-304 (342)
90 KOG1975 mRNA cap methyltransfe 96.2 0.01 2.2E-07 42.4 4.4 38 7-44 196-235 (389)
91 TIGR03439 methyl_EasF probable 96.1 0.013 2.9E-07 41.7 4.8 42 9-50 159-202 (319)
92 PRK09328 N5-glutamine S-adenos 96.0 0.11 2.4E-06 35.7 9.0 57 25-111 217-274 (275)
93 COG4106 Tam Trans-aconitate me 96.0 0.033 7.2E-07 37.8 6.0 101 7-111 92-202 (257)
94 TIGR00138 gidB 16S rRNA methyl 95.8 0.065 1.4E-06 35.0 6.6 32 8-45 110-141 (181)
95 PF07942 N2227: N2227-like pro 95.6 0.12 2.6E-06 36.1 7.6 76 9-100 167-242 (270)
96 TIGR02469 CbiT precorrin-6Y C5 95.5 0.019 4.2E-07 34.3 3.3 33 8-45 89-121 (124)
97 PRK00377 cbiT cobalt-precorrin 95.4 0.1 2.2E-06 34.4 6.6 32 8-44 112-143 (198)
98 PF06859 Bin3: Bicoid-interact 95.3 0.0045 9.7E-08 37.4 -0.1 82 9-101 3-93 (110)
99 PRK00107 gidB 16S rRNA methylt 95.2 0.2 4.4E-06 33.0 7.4 33 8-46 113-145 (187)
100 PRK11188 rrmJ 23S rRNA methylt 95.2 0.056 1.2E-06 36.1 4.9 39 9-47 119-166 (209)
101 PF11899 DUF3419: Protein of u 95.1 0.032 6.8E-07 40.8 3.8 48 4-51 290-339 (380)
102 PF03291 Pox_MCEL: mRNA cappin 95.0 0.025 5.4E-07 40.5 2.9 39 9-47 147-187 (331)
103 PRK00121 trmB tRNA (guanine-N( 94.7 0.056 1.2E-06 35.9 3.9 38 9-46 113-156 (202)
104 PF05175 MTS: Methyltransferas 94.7 0.056 1.2E-06 34.8 3.8 46 2-47 91-141 (170)
105 COG5459 Predicted rRNA methyla 94.4 0.035 7.6E-07 40.3 2.5 46 4-49 179-228 (484)
106 PF09243 Rsm22: Mitochondrial 94.3 0.097 2.1E-06 36.5 4.5 44 5-50 100-143 (274)
107 TIGR00027 mthyl_TIGR00027 meth 94.2 0.3 6.5E-06 33.8 6.8 84 9-98 160-248 (260)
108 PRK14967 putative methyltransf 94.0 0.87 1.9E-05 30.5 8.6 25 25-49 138-162 (223)
109 KOG1331 Predicted methyltransf 93.9 0.072 1.6E-06 37.4 3.2 40 8-47 104-144 (293)
110 KOG2899 Predicted methyltransf 93.9 0.1 2.2E-06 36.1 3.8 84 5-96 164-253 (288)
111 PF07021 MetW: Methionine bios 93.4 1 2.2E-05 30.0 7.8 89 4-103 70-170 (193)
112 COG3315 O-Methyltransferase in 93.2 0.54 1.2E-05 33.3 6.7 88 9-98 172-262 (297)
113 TIGR00438 rrmJ cell division p 92.1 0.2 4.3E-06 32.7 3.2 37 9-45 100-145 (188)
114 COG4976 Predicted methyltransf 91.9 0.76 1.7E-05 31.7 5.7 78 8-101 189-266 (287)
115 PRK13944 protein-L-isoaspartat 91.6 0.23 5E-06 32.9 3.1 29 9-45 144-172 (205)
116 PRK11088 rrmA 23S rRNA methylt 91.6 0.22 4.7E-06 34.5 3.0 30 9-47 153-182 (272)
117 cd01842 SGNH_hydrolase_like_5 91.6 0.44 9.5E-06 31.4 4.2 40 9-48 52-101 (183)
118 TIGR00563 rsmB ribosomal RNA s 91.5 0.47 1E-05 35.1 4.9 27 26-52 348-374 (426)
119 COG2242 CobL Precorrin-6B meth 91.5 0.43 9.3E-06 31.6 4.1 37 4-46 99-135 (187)
120 KOG2798 Putative trehalase [Ca 91.3 1.6 3.5E-05 31.4 7.1 78 9-101 261-338 (369)
121 COG4301 Uncharacterized conser 91.2 0.54 1.2E-05 32.8 4.6 41 9-49 156-197 (321)
122 PRK04457 spermidine synthase; 90.3 0.35 7.6E-06 33.5 3.1 36 9-45 138-176 (262)
123 TIGR00417 speE spermidine synt 90.3 0.55 1.2E-05 32.5 4.0 37 9-45 147-185 (270)
124 PRK13942 protein-L-isoaspartat 90.1 0.4 8.8E-06 32.0 3.2 30 9-46 147-176 (212)
125 COG2521 Predicted archaeal met 89.8 2.1 4.5E-05 29.8 6.3 57 25-103 224-280 (287)
126 PF03141 Methyltransf_29: Puta 89.7 0.12 2.7E-06 38.9 0.5 46 4-50 176-223 (506)
127 TIGR00406 prmA ribosomal prote 89.7 0.49 1.1E-05 33.1 3.5 34 9-47 227-260 (288)
128 PF13659 Methyltransf_26: Meth 89.4 0.33 7.2E-06 28.7 2.1 38 9-46 72-115 (117)
129 COG4123 Predicted O-methyltran 88.7 3.2 6.9E-05 28.8 6.7 58 25-112 149-212 (248)
130 PF08123 DOT1: Histone methyla 88.2 0.94 2E-05 30.3 3.9 43 7-52 122-164 (205)
131 PRK11805 N5-glutamine S-adenos 88.2 1.2 2.5E-05 31.7 4.5 20 25-44 242-261 (307)
132 COG0500 SmtA SAM-dependent met 88.1 1.4 3E-05 26.0 4.4 40 9-51 121-160 (257)
133 PRK00811 spermidine synthase; 87.3 1.4 3.1E-05 30.8 4.5 37 9-45 152-190 (283)
134 TIGR00006 S-adenosyl-methyltra 87.3 0.97 2.1E-05 32.2 3.7 30 23-52 217-246 (305)
135 PRK07402 precorrin-6B methylas 87.2 0.95 2.1E-05 29.6 3.4 23 25-47 121-143 (196)
136 TIGR01177 conserved hypothetic 87.1 1.9 4.1E-05 30.8 5.1 22 25-46 273-294 (329)
137 KOG1269 SAM-dependent methyltr 87.0 0.77 1.7E-05 33.5 3.1 46 4-51 173-220 (364)
138 PRK00312 pcm protein-L-isoaspa 86.9 1 2.2E-05 29.8 3.5 30 9-46 146-175 (212)
139 COG2813 RsmC 16S RNA G1207 met 86.9 2 4.3E-05 30.6 5.0 46 2-47 218-267 (300)
140 TIGR00091 tRNA (guanine-N(7)-) 86.9 0.88 1.9E-05 29.9 3.1 21 26-46 112-132 (194)
141 COG0275 Predicted S-adenosylme 86.8 0.75 1.6E-05 32.8 2.9 30 23-52 221-250 (314)
142 PF10017 Methyltransf_33: Hist 86.5 1.9 4.1E-05 26.5 4.3 33 75-107 92-125 (127)
143 TIGR00080 pimt protein-L-isoas 86.5 1 2.2E-05 30.0 3.3 29 9-45 148-176 (215)
144 PF07109 Mg-por_mtran_C: Magne 86.1 5.2 0.00011 23.7 6.4 77 16-104 4-86 (97)
145 PRK14121 tRNA (guanine-N(7)-)- 86.0 1.7 3.7E-05 32.1 4.4 44 3-47 186-236 (390)
146 PRK00050 16S rRNA m(4)C1402 me 85.5 1.4 3E-05 31.3 3.7 30 23-52 213-242 (296)
147 PF03141 Methyltransf_29: Puta 85.2 0.95 2.1E-05 34.3 2.8 46 2-47 421-468 (506)
148 TIGR00536 hemK_fam HemK family 84.8 3.1 6.8E-05 29.0 5.2 21 24-44 222-242 (284)
149 KOG3010 Methyltransferase [Gen 84.4 1 2.3E-05 31.1 2.5 36 9-47 102-138 (261)
150 PF03059 NAS: Nicotianamine sy 84.3 1.8 3.9E-05 30.5 3.7 36 9-45 194-229 (276)
151 COG2264 PrmA Ribosomal protein 84.2 12 0.00025 26.8 7.7 66 9-108 231-296 (300)
152 PF06325 PrmA: Ribosomal prote 82.9 5.1 0.00011 28.4 5.6 67 9-110 227-293 (295)
153 PLN02366 spermidine synthase 82.2 3.4 7.4E-05 29.4 4.6 37 9-45 167-205 (308)
154 PRK14901 16S rRNA methyltransf 82.0 1.7 3.6E-05 32.3 3.1 26 26-51 364-389 (434)
155 PRK14966 unknown domain/N5-glu 81.5 16 0.00034 27.4 7.9 56 25-110 360-416 (423)
156 TIGR02764 spore_ybaN_pdaB poly 81.1 3 6.5E-05 27.1 3.8 58 17-98 130-187 (191)
157 PF03514 GRAS: GRAS domain fam 80.7 14 0.0003 27.1 7.4 20 80-99 311-330 (374)
158 PF01795 Methyltransf_5: MraW 80.6 1 2.2E-05 32.2 1.5 30 23-52 218-247 (310)
159 PRK15001 SAM-dependent 23S rib 80.5 7.2 0.00016 28.7 5.8 45 3-50 101-146 (378)
160 PF10294 Methyltransf_16: Puta 80.3 3.5 7.7E-05 26.6 3.8 40 8-49 120-159 (173)
161 COG0503 Apt Adenine/guanine ph 80.2 6.6 0.00014 25.7 5.1 48 28-101 105-152 (179)
162 PHA03411 putative methyltransf 80.0 12 0.00026 26.5 6.5 64 9-95 128-209 (279)
163 PRK10901 16S rRNA methyltransf 79.5 2.4 5.2E-05 31.4 3.2 26 26-51 352-377 (427)
164 PLN02781 Probable caffeoyl-CoA 78.9 6.1 0.00013 26.8 4.8 34 9-47 146-179 (234)
165 PRK14904 16S rRNA methyltransf 78.8 2.4 5.3E-05 31.6 3.0 27 26-52 357-383 (445)
166 TIGR00446 nop2p NOL1/NOP2/sun 78.7 2.7 5.8E-05 29.1 3.1 26 26-51 179-204 (264)
167 PRK01544 bifunctional N5-gluta 78.6 18 0.0004 27.6 7.7 47 25-101 248-294 (506)
168 KOG2539 Mitochondrial/chloropl 78.1 4.2 9.1E-05 30.8 4.0 40 9-48 276-317 (491)
169 PF08845 SymE_toxin: Toxin Sym 77.7 2.1 4.5E-05 22.8 1.8 16 86-101 31-46 (57)
170 COG3963 Phospholipid N-methylt 77.4 10 0.00022 25.1 5.2 41 8-48 118-158 (194)
171 PRK14903 16S rRNA methyltransf 75.8 3.5 7.6E-05 30.7 3.1 27 26-52 346-372 (431)
172 PRK09489 rsmC 16S ribosomal RN 75.8 11 0.00023 27.4 5.5 37 9-50 78-116 (342)
173 COG2519 GCD14 tRNA(1-methylade 75.7 3.4 7.4E-05 28.7 2.8 31 18-50 169-199 (256)
174 COG2518 Pcm Protein-L-isoaspar 73.9 7.5 0.00016 26.3 4.1 36 4-47 132-170 (209)
175 PF03269 DUF268: Caenorhabditi 73.6 6.3 0.00014 25.8 3.5 25 26-50 91-115 (177)
176 cd04911 ACT_AKiii-YclM-BS_1 AC 73.3 6.8 0.00015 22.1 3.2 37 2-40 32-71 (76)
177 PRK03612 spermidine synthase; 72.9 7.3 0.00016 29.8 4.3 37 9-45 375-414 (521)
178 TIGR03533 L3_gln_methyl protei 72.6 5.5 0.00012 27.9 3.3 20 25-44 230-249 (284)
179 PF03574 Peptidase_S48: Peptid 72.4 3.1 6.7E-05 25.7 1.8 29 15-43 12-40 (149)
180 COG2813 RsmC 16S RNA G1207 met 72.2 14 0.00031 26.4 5.3 37 9-48 39-75 (300)
181 PRK14902 16S rRNA methyltransf 72.0 4.9 0.00011 29.9 3.1 25 26-50 359-383 (444)
182 PRK11524 putative methyltransf 72.0 5.5 0.00012 27.8 3.2 20 26-45 60-79 (284)
183 PF08468 MTS_N: Methyltransfer 71.9 7.4 0.00016 24.9 3.5 37 9-50 71-109 (155)
184 PRK01581 speE spermidine synth 70.9 5.1 0.00011 29.5 2.9 20 26-45 248-267 (374)
185 PRK11933 yebU rRNA (cytosine-C 70.9 4.4 9.5E-05 30.7 2.7 24 26-49 222-245 (470)
186 COG4353 Uncharacterized conser 69.6 23 0.00049 23.1 5.3 60 25-101 72-131 (192)
187 TIGR03439 methyl_EasF probable 69.6 9.3 0.0002 27.4 4.0 33 75-107 284-317 (319)
188 PF14258 DUF4350: Domain of un 69.3 12 0.00026 20.1 3.7 23 19-45 46-69 (70)
189 PF05430 Methyltransf_30: S-ad 68.9 12 0.00025 23.1 3.9 32 81-112 92-123 (124)
190 PRK13699 putative methylase; P 68.7 7.1 0.00015 26.5 3.1 20 25-44 51-70 (227)
191 KOG2198 tRNA cytosine-5-methyl 68.2 5.4 0.00012 29.3 2.5 27 26-52 276-302 (375)
192 TIGR03704 PrmC_rel_meth putati 67.5 7.7 0.00017 26.6 3.2 20 26-45 196-215 (251)
193 KOG3987 Uncharacterized conser 67.2 4.1 8.8E-05 27.9 1.7 82 9-101 171-261 (288)
194 PF08002 DUF1697: Protein of u 67.2 8 0.00017 24.2 2.9 34 75-109 14-48 (137)
195 PF01555 N6_N4_Mtase: DNA meth 66.7 3.8 8.2E-05 26.8 1.5 21 25-45 35-55 (231)
196 PF07927 YcfA: YcfA-like prote 66.5 6 0.00013 20.3 2.0 17 82-98 2-18 (56)
197 COG5379 BtaA S-adenosylmethion 62.9 20 0.00043 26.0 4.5 38 9-46 329-366 (414)
198 PRK13943 protein-L-isoaspartat 62.4 8.1 0.00018 27.7 2.6 30 9-46 151-180 (322)
199 PF11312 DUF3115: Protein of u 62.3 12 0.00026 26.9 3.3 26 22-47 218-243 (315)
200 PF06968 BATS: Biotin and Thia 62.0 16 0.00035 21.1 3.4 76 18-94 17-92 (93)
201 KOG1271 Methyltransferases [Ge 61.9 20 0.00043 24.1 4.1 24 79-102 184-207 (227)
202 COG0144 Sun tRNA and rRNA cyto 61.6 11 0.00024 27.3 3.2 27 26-52 268-294 (355)
203 cd01093 CRIB_PAK_like PAK (p21 61.5 5.3 0.00012 20.1 1.1 18 80-97 27-44 (46)
204 PF15603 Imm45: Immunity prote 61.0 29 0.00064 19.8 4.6 39 8-46 35-82 (82)
205 PLN02672 methionine S-methyltr 60.7 37 0.00081 28.7 6.2 22 25-47 257-278 (1082)
206 KOG2918 Carboxymethyl transfer 60.2 33 0.00073 24.8 5.2 85 10-101 191-278 (335)
207 PRK13587 1-(5-phosphoribosyl)- 59.9 25 0.00054 24.0 4.5 54 40-97 163-219 (234)
208 PF13578 Methyltransf_24: Meth 59.5 6.9 0.00015 22.7 1.6 24 23-46 82-105 (106)
209 KOG1661 Protein-L-isoaspartate 59.4 6.1 0.00013 27.0 1.4 29 9-45 164-192 (237)
210 PF05772 NinB: NinB protein; 59.0 29 0.00063 21.5 4.3 35 65-101 48-87 (127)
211 COG4822 CbiK Cobalamin biosynt 58.9 12 0.00027 25.6 2.8 20 80-99 217-236 (265)
212 PLN02476 O-methyltransferase 58.6 62 0.0014 22.8 7.8 35 9-49 196-230 (278)
213 PF13592 HTH_33: Winged helix- 58.5 11 0.00024 19.8 2.1 27 75-101 18-44 (60)
214 PF06962 rRNA_methylase: Putat 57.6 7.3 0.00016 24.6 1.5 24 24-47 70-93 (140)
215 PRK08558 adenine phosphoribosy 57.3 27 0.00058 24.0 4.3 66 34-100 171-236 (238)
216 PF06557 DUF1122: Protein of u 56.7 13 0.00027 24.3 2.4 60 25-101 65-124 (170)
217 PRK09213 pur operon repressor; 56.2 37 0.0008 23.9 4.9 19 34-52 191-209 (271)
218 KOG2940 Predicted methyltransf 56.0 4.1 8.8E-05 28.4 0.1 81 9-98 139-225 (325)
219 cd03413 CbiK_C Anaerobic cobal 55.6 14 0.0003 21.9 2.4 18 81-98 81-98 (103)
220 PRK01033 imidazole glycerol ph 55.3 29 0.00063 23.9 4.3 25 74-98 201-225 (258)
221 PF00919 UPF0004: Uncharacteri 54.7 42 0.0009 19.6 4.8 47 7-53 36-83 (98)
222 PF01206 TusA: Sulfurtransfera 54.6 29 0.00062 18.5 3.4 27 81-107 40-66 (70)
223 PF09382 RQC: RQC domain; Int 54.1 6.8 0.00015 22.9 0.9 63 23-91 4-66 (106)
224 PF14740 DUF4471: Domain of un 53.2 13 0.00029 26.3 2.4 62 9-97 224-286 (289)
225 PF09822 ABC_transp_aux: ABC-t 52.8 47 0.001 22.8 5.0 40 3-46 192-232 (271)
226 COG3897 Predicted methyltransf 52.8 33 0.00072 23.3 4.0 41 7-50 142-183 (218)
227 PRK06852 aldolase; Validated 52.5 15 0.00032 26.3 2.5 28 18-45 9-36 (304)
228 COG4004 Uncharacterized protei 52.1 47 0.001 19.5 4.5 38 75-112 8-49 (96)
229 TIGR01033 DNA-binding regulato 51.2 34 0.00073 23.6 4.0 19 80-98 148-166 (238)
230 PRK04280 arginine repressor; P 50.9 16 0.00035 23.2 2.3 23 75-97 15-37 (148)
231 PRK00536 speE spermidine synth 50.8 19 0.00041 25.2 2.8 30 9-45 141-170 (262)
232 smart00874 B5 tRNA synthetase 50.6 21 0.00046 19.1 2.5 21 76-96 16-36 (71)
233 PF01316 Arg_repressor: Argini 50.6 12 0.00027 20.6 1.5 22 76-97 17-38 (70)
234 PF10006 DUF2249: Uncharacteri 50.6 37 0.00081 18.2 3.5 27 21-47 8-34 (69)
235 PF03698 UPF0180: Uncharacteri 50.4 16 0.00035 20.8 2.0 24 78-101 7-30 (80)
236 PF02636 Methyltransf_28: Puta 49.9 28 0.0006 23.8 3.5 27 24-50 172-198 (252)
237 PRK10858 nitrogen regulatory p 49.9 38 0.00082 20.4 3.7 28 20-47 65-96 (112)
238 TIGR01743 purR_Bsub pur operon 49.5 46 0.00099 23.4 4.5 19 34-52 189-207 (268)
239 TIGR01744 XPRTase xanthine pho 49.5 70 0.0015 21.1 5.2 67 34-101 112-178 (191)
240 PF02390 Methyltransf_4: Putat 49.2 9.1 0.0002 25.3 1.0 21 26-46 113-133 (195)
241 COG1795 Formaldehyde-activatin 49.2 14 0.00031 23.7 1.8 29 9-37 107-135 (170)
242 PF02153 PDH: Prephenate dehyd 48.9 59 0.0013 22.3 5.0 17 82-98 140-156 (258)
243 PF01135 PCMT: Protein-L-isoas 48.3 11 0.00023 25.4 1.2 30 9-46 143-172 (209)
244 cd00291 SirA_YedF_YeeD SirA, Y 48.1 42 0.0009 17.7 3.8 25 80-104 38-62 (69)
245 PRK09219 xanthine phosphoribos 48.1 67 0.0014 21.2 4.9 67 34-101 112-178 (189)
246 PRK13605 endoribonuclease SymE 47.7 27 0.00058 21.3 2.7 16 86-101 45-60 (113)
247 PF05763 DUF835: Protein of un 47.1 34 0.00074 21.4 3.3 39 9-47 42-83 (136)
248 COG1743 Adenine-specific DNA m 47.1 61 0.0013 26.6 5.2 27 25-51 567-593 (875)
249 COG0220 Predicted S-adenosylme 46.6 26 0.00057 23.9 2.9 21 26-46 144-164 (227)
250 PRK13245 hetR heterocyst diffe 46.5 9 0.00019 26.3 0.6 30 13-42 63-92 (299)
251 PLN02823 spermine synthase 46.1 24 0.00053 25.5 2.8 20 26-45 199-219 (336)
252 PF03484 B5: tRNA synthetase B 46.0 23 0.00049 19.2 2.1 23 76-98 16-38 (70)
253 PF14814 UB2H: Bifunctional tr 46.0 16 0.00035 20.8 1.6 25 75-99 3-27 (85)
254 COG0421 SpeE Spermidine syntha 45.9 26 0.00057 24.7 2.9 20 26-45 170-189 (282)
255 PRK00110 hypothetical protein; 45.8 52 0.0011 22.8 4.3 19 80-98 146-164 (245)
256 PF07685 GATase_3: CobB/CobQ-l 45.4 16 0.00035 23.1 1.7 40 4-43 3-46 (158)
257 cd03420 SirA_RHOD_Pry_redox Si 45.1 50 0.0011 17.7 6.6 26 81-106 39-64 (69)
258 KOG2352 Predicted spermine/spe 45.0 55 0.0012 25.1 4.6 45 9-53 116-170 (482)
259 cd03238 ABC_UvrA The excision 45.0 74 0.0016 20.6 4.8 7 40-46 108-114 (176)
260 PF01189 Nol1_Nop2_Fmu: NOL1/N 43.9 9 0.0002 26.9 0.4 26 26-51 195-224 (283)
261 PRK09019 translation initiatio 43.9 72 0.0016 19.3 5.5 50 20-96 55-104 (108)
262 cd03421 SirA_like_N SirA_like_ 43.6 51 0.0011 17.4 4.4 22 81-103 38-59 (67)
263 COG1438 ArgR Arginine represso 43.6 22 0.00048 22.7 2.1 23 75-97 17-39 (150)
264 PRK03094 hypothetical protein; 43.4 28 0.0006 19.9 2.2 24 77-100 6-29 (80)
265 COG4301 Uncharacterized conser 43.1 47 0.001 23.5 3.7 37 74-110 282-319 (321)
266 PF03492 Methyltransf_7: SAM d 43.1 43 0.00093 24.2 3.7 25 27-51 164-188 (334)
267 PRK10665 nitrogen regulatory p 42.2 58 0.0013 19.6 3.7 28 20-47 65-96 (112)
268 PF09827 CRISPR_Cas2: CRISPR a 42.1 59 0.0013 17.8 3.9 29 20-48 39-68 (78)
269 PF01870 Hjc: Archaeal hollida 42.1 22 0.00047 20.6 1.7 18 81-98 3-20 (88)
270 PF00543 P-II: Nitrogen regula 41.8 25 0.00055 20.5 2.0 28 20-47 62-93 (102)
271 PF12419 DUF3670: SNF2 Helicas 41.7 87 0.0019 19.5 5.2 75 20-97 11-101 (141)
272 PF01564 Spermine_synth: Sperm 41.4 13 0.00027 25.6 0.8 21 26-46 171-191 (246)
273 PF10354 DUF2431: Domain of un 41.3 46 0.00099 21.5 3.3 50 26-102 105-154 (166)
274 PF13319 DUF4090: Protein of u 41.2 35 0.00076 19.3 2.3 25 75-99 55-79 (84)
275 TIGR00074 hypC_hupF hydrogenas 41.1 65 0.0014 18.1 3.5 30 5-34 36-67 (76)
276 KOG3924 Putative protein methy 41.1 51 0.0011 24.7 3.8 44 6-52 271-314 (419)
277 TIGR02873 spore_ylxY probable 40.7 29 0.00063 24.2 2.5 54 18-98 210-263 (268)
278 KOG0121 Nuclear cap-binding pr 40.6 71 0.0015 20.2 3.9 32 79-111 48-86 (153)
279 PF01709 Transcrip_reg: Transc 40.3 6.5 0.00014 26.9 -0.8 20 78-97 142-161 (234)
280 PF08373 RAP: RAP domain; Int 40.3 27 0.0006 17.8 1.8 15 85-99 24-38 (58)
281 cd03422 YedF YedF is a bacteri 40.1 62 0.0013 17.4 3.7 23 81-103 39-61 (69)
282 PF10281 Ish1: Putative stress 40.0 38 0.00081 16.0 2.2 18 79-96 4-21 (38)
283 PRK05066 arginine repressor; P 39.7 24 0.00051 22.7 1.8 22 75-96 20-42 (156)
284 PF01455 HupF_HypC: HupF/HypC 39.5 61 0.0013 17.7 3.2 28 5-32 38-67 (68)
285 PF11305 DUF3107: Protein of u 39.3 39 0.00084 19.0 2.4 25 22-46 19-44 (74)
286 PRK13810 orotate phosphoribosy 39.0 1.1E+02 0.0025 20.1 5.3 21 33-53 116-136 (187)
287 PF12646 DUF3783: Domain of un 39.0 40 0.00086 17.7 2.3 20 16-35 5-24 (58)
288 TIGR03473 HpnK hopanoid biosyn 39.0 72 0.0016 22.4 4.3 61 27-97 215-277 (283)
289 PF12780 AAA_8: P-loop contain 38.7 74 0.0016 22.3 4.2 70 25-99 16-92 (268)
290 PF01436 NHL: NHL repeat; Int 38.4 18 0.00039 15.8 0.8 11 37-47 10-20 (28)
291 COG0217 Uncharacterized conser 38.1 39 0.00085 23.4 2.7 21 79-99 147-167 (241)
292 PF15585 Imm46: Immunity prote 38.1 87 0.0019 19.6 4.0 38 9-47 51-93 (129)
293 PF00107 ADH_zinc_N: Zinc-bind 38.0 16 0.00035 21.7 0.8 24 26-49 69-92 (130)
294 COG1245 Predicted ATPase, RNas 38.0 95 0.0021 24.1 4.9 41 7-47 231-271 (591)
295 COG3053 CitC Citrate lyase syn 37.1 42 0.00091 24.2 2.8 33 75-109 92-124 (352)
296 COG2326 Uncharacterized conser 37.0 57 0.0012 23.0 3.4 67 23-99 115-184 (270)
297 PF10087 DUF2325: Uncharacteri 36.8 37 0.0008 19.5 2.2 24 75-98 6-29 (97)
298 PRK12378 hypothetical protein; 36.8 63 0.0014 22.3 3.6 34 19-52 58-103 (235)
299 COG4122 Predicted O-methyltran 36.8 72 0.0016 21.7 3.8 37 9-51 134-170 (219)
300 PF03793 PASTA: PASTA domain; 36.8 58 0.0013 16.8 2.8 21 79-99 9-29 (63)
301 CHL00123 rps6 ribosomal protei 36.8 65 0.0014 18.8 3.2 28 20-47 18-46 (97)
302 PRK02083 imidazole glycerol ph 36.3 63 0.0014 22.1 3.6 23 74-96 202-224 (253)
303 cd04276 ZnMc_MMP_like_2 Zinc-d 36.1 51 0.0011 22.0 3.0 22 80-101 29-50 (197)
304 PF05924 SAMP: SAMP Motif; In 35.9 39 0.00085 13.9 1.6 12 27-38 4-15 (20)
305 PRK06132 hypothetical protein; 35.8 42 0.00091 24.7 2.7 24 26-49 321-344 (359)
306 PRK11018 hypothetical protein; 35.7 81 0.0018 17.5 3.7 23 81-103 48-70 (78)
307 PF06200 tify: tify domain; I 35.5 41 0.00089 16.0 1.8 18 15-32 17-34 (36)
308 PRK13510 sulfur transfer compl 35.5 40 0.00086 19.6 2.2 31 17-47 2-32 (95)
309 cd08283 FDH_like_1 Glutathione 35.4 47 0.001 24.0 3.0 22 26-47 286-307 (386)
310 PRK05225 ketol-acid reductoiso 35.3 76 0.0016 24.4 4.0 37 6-47 96-132 (487)
311 cd04882 ACT_Bt0572_2 C-termina 35.0 39 0.00085 17.2 2.0 16 80-95 49-64 (65)
312 PF10726 DUF2518: Protein of f 34.7 53 0.0012 20.9 2.7 33 9-42 81-113 (145)
313 cd03423 SirA SirA (also known 34.5 78 0.0017 16.9 4.6 26 81-106 39-64 (69)
314 TIGR00007 phosphoribosylformim 34.5 1.3E+02 0.0027 20.1 4.8 24 74-98 194-217 (230)
315 KOG3201 Uncharacterized conser 34.5 79 0.0017 20.9 3.5 35 9-45 105-139 (201)
316 PF01269 Fibrillarin: Fibrilla 34.2 25 0.00054 24.1 1.3 76 9-110 145-225 (229)
317 KOG0964 Structural maintenance 34.0 48 0.001 27.9 2.9 23 75-97 112-134 (1200)
318 PF00017 SH2: SH2 domain; Int 34.0 51 0.0011 17.7 2.4 27 18-48 4-30 (77)
319 COG1187 RsuA 16S rRNA uridine- 33.9 55 0.0012 22.8 2.9 24 75-101 190-213 (248)
320 PRK14339 (dimethylallyl)adenos 33.9 1.2E+02 0.0026 22.5 5.0 45 7-51 27-72 (420)
321 PF08704 GCD14: tRNA methyltra 33.8 10 0.00022 26.3 -0.7 34 9-49 115-149 (247)
322 PRK00299 sulfur transfer prote 33.7 91 0.002 17.4 6.7 49 26-103 23-71 (81)
323 COG4421 Capsular polysaccharid 33.7 40 0.00087 24.6 2.3 21 80-100 242-262 (368)
324 TIGR03126 one_C_fae formaldehy 33.4 37 0.0008 22.0 1.9 27 9-35 105-131 (160)
325 cd04723 HisA_HisF Phosphoribos 33.3 1.6E+02 0.0034 20.0 6.1 69 25-98 148-217 (233)
326 COG1724 Predicted RNA binding 32.8 70 0.0015 17.5 2.6 21 79-99 7-27 (66)
327 TIGR03707 PPK2_P_aer polyphosp 32.4 82 0.0018 21.6 3.6 69 24-99 73-141 (230)
328 PF09587 PGA_cap: Bacterial ca 32.3 1.6E+02 0.0035 19.9 5.2 43 9-51 7-50 (250)
329 smart00463 SMR Small MutS-rela 31.9 55 0.0012 18.0 2.3 24 17-40 6-29 (80)
330 PF07862 Nif11: Nitrogen fixat 31.5 62 0.0013 16.0 2.3 18 79-96 27-44 (49)
331 COG1092 Predicted SAM-dependen 31.4 62 0.0013 24.1 3.0 25 25-49 315-339 (393)
332 COG3870 Uncharacterized protei 31.4 87 0.0019 18.8 3.1 25 80-104 12-36 (109)
333 KOG0805 Carbon-nitrogen hydrol 31.4 1.7E+02 0.0036 20.8 4.9 44 10-54 22-66 (337)
334 PF06897 DUF1269: Protein of u 31.3 85 0.0018 18.6 3.1 21 27-47 43-63 (102)
335 COG4309 Uncharacterized conser 31.3 89 0.0019 18.4 3.0 38 1-45 1-40 (98)
336 PF03434 DUF276: DUF276 ; Int 31.3 54 0.0012 22.9 2.5 22 21-42 53-74 (291)
337 PF06283 ThuA: Trehalose utili 31.3 1.3E+02 0.0029 19.8 4.5 35 8-46 53-88 (217)
338 PRK09662 GspL-like protein; Pr 31.1 44 0.00096 23.7 2.2 21 81-101 7-27 (286)
339 COG4273 Uncharacterized conser 31.0 56 0.0012 20.4 2.3 23 18-40 109-131 (135)
340 COG3019 Predicted metal-bindin 31.0 56 0.0012 20.8 2.4 18 82-99 40-57 (149)
341 PF01887 SAM_adeno_trans: S-ad 31.0 1.6E+02 0.0035 20.5 4.9 47 6-52 27-74 (258)
342 cd02931 ER_like_FMN Enoate red 30.5 2.2E+02 0.0048 20.9 6.1 29 20-48 76-104 (382)
343 smart00115 CASc Caspase, inter 30.3 1.2E+02 0.0026 20.7 4.1 20 78-97 29-48 (241)
344 TIGR03709 PPK2_rel_1 polyphosp 30.2 97 0.0021 21.8 3.7 68 25-99 99-166 (264)
345 cd08258 Zn_ADH4 Alcohol dehydr 30.1 1.6E+02 0.0034 20.4 4.8 23 27-49 245-267 (306)
346 PF13580 SIS_2: SIS domain; PD 30.0 49 0.0011 20.3 2.1 26 22-47 18-43 (138)
347 cd04909 ACT_PDH-BS C-terminal 30.0 49 0.0011 17.3 1.8 16 80-95 54-69 (69)
348 PLN02589 caffeoyl-CoA O-methyl 29.9 89 0.0019 21.6 3.5 35 9-49 158-192 (247)
349 PF11455 DUF3018: Protein of 29.9 72 0.0016 17.4 2.4 18 82-99 6-23 (65)
350 PF10672 Methyltrans_SAM: S-ad 29.8 28 0.0006 24.7 1.0 23 25-47 217-239 (286)
351 KOG2972 Uncharacterized conser 29.6 52 0.0011 23.1 2.2 19 33-51 114-132 (276)
352 PF13399 LytR_C: LytR cell env 29.4 47 0.001 18.7 1.8 21 79-99 16-36 (90)
353 PRK15128 23S rRNA m(5)C1962 me 29.4 71 0.0015 23.7 3.1 22 26-47 319-340 (396)
354 PF00786 PBD: P21-Rho-binding 29.1 51 0.0011 17.3 1.7 19 79-97 25-43 (59)
355 PRK14755 transcriptional regul 29.0 26 0.00056 14.9 0.5 13 30-42 10-22 (26)
356 PF11432 DUF3197: Protein of u 28.9 1.2E+02 0.0027 18.3 3.5 22 76-97 57-78 (113)
357 PLN02446 (5-phosphoribosyl)-5- 28.7 92 0.002 21.9 3.4 72 16-90 153-228 (262)
358 PF02492 cobW: CobW/HypB/UreG, 28.7 59 0.0013 20.8 2.3 35 8-43 143-177 (178)
359 TIGR00336 pyrE orotate phospho 28.7 1.6E+02 0.0036 18.8 4.6 18 35-52 104-121 (173)
360 COG2240 PdxK Pyridoxal/pyridox 28.7 1E+02 0.0022 21.9 3.6 41 8-53 74-117 (281)
361 PF00403 HMA: Heavy-metal-asso 28.5 55 0.0012 16.7 1.9 16 79-94 47-62 (62)
362 TIGR03675 arCOG00543 arCOG0054 28.5 1.6E+02 0.0034 23.4 4.9 43 6-48 363-411 (630)
363 cd03319 L-Ala-DL-Glu_epimerase 28.4 2.1E+02 0.0046 20.1 5.7 27 75-101 234-260 (316)
364 PF05711 TylF: Macrocin-O-meth 28.4 25 0.00054 24.4 0.5 25 25-49 191-215 (248)
365 PRK02220 4-oxalocrotonate taut 28.4 93 0.002 15.9 3.4 35 16-50 8-48 (61)
366 cd04908 ACT_Bt0572_1 N-termina 28.4 60 0.0013 17.0 2.0 16 80-95 49-64 (66)
367 PF09572 RE_XamI: XamI restric 28.4 83 0.0018 21.9 3.0 74 22-98 64-143 (251)
368 PF13167 GTP-bdg_N: GTP-bindin 28.1 73 0.0016 18.7 2.4 21 79-99 8-28 (95)
369 COG2103 Predicted sugar phosph 27.9 59 0.0013 23.1 2.3 74 25-99 46-133 (298)
370 PF11590 DNAPolymera_Pol: DNA 27.8 49 0.0011 16.2 1.4 14 83-96 2-15 (41)
371 PF04989 CmcI: Cephalosporin h 27.8 36 0.00077 23.0 1.2 34 16-51 119-152 (206)
372 COG1902 NemA NADH:flavin oxido 27.7 2.5E+02 0.0055 20.7 6.1 86 16-102 73-172 (363)
373 TIGR01919 hisA-trpF 1-(5-phosp 27.6 2E+02 0.0044 19.7 4.9 57 40-96 164-222 (243)
374 PF14117 DUF4287: Domain of un 27.6 67 0.0015 17.2 2.0 14 79-92 15-28 (61)
375 PF07485 DUF1529: Domain of Un 27.6 29 0.00062 21.4 0.7 22 16-37 100-121 (123)
376 PF12368 DUF3650: Protein of u 27.4 53 0.0011 14.8 1.3 13 18-30 14-26 (28)
377 cd05007 SIS_Etherase N-acetylm 27.3 75 0.0016 22.0 2.8 24 24-47 34-57 (257)
378 PRK11783 rlmL 23S rRNA m(2)G24 27.2 79 0.0017 25.3 3.1 21 25-45 635-655 (702)
379 PF00724 Oxidored_FMN: NADH:fl 27.0 2.4E+02 0.0052 20.3 5.4 84 18-102 72-172 (341)
380 PF00977 His_biosynth: Histidi 26.8 34 0.00074 23.1 1.0 73 17-95 138-216 (229)
381 cd04731 HisF The cyclase subun 26.6 1.8E+02 0.0039 19.6 4.5 25 74-98 198-222 (243)
382 TIGR01367 pyrE_Therm orotate p 26.5 1.9E+02 0.0042 18.9 4.8 16 36-51 102-117 (187)
383 PF00072 Response_reg: Respons 26.5 1.3E+02 0.0027 16.8 4.5 34 9-46 45-78 (112)
384 PF04816 DUF633: Family of unk 26.5 1.2E+02 0.0026 20.3 3.6 32 80-111 104-138 (205)
385 KOG2383 Predicted ATPase [Gene 26.4 86 0.0019 23.8 3.0 50 2-51 180-235 (467)
386 PRK07451 translation initiatio 26.4 1.6E+02 0.0035 18.0 5.2 49 21-96 63-111 (115)
387 PF00156 Pribosyltran: Phospho 26.2 1.4E+02 0.0031 17.3 4.9 20 80-99 103-122 (125)
388 PF13344 Hydrolase_6: Haloacid 26.1 65 0.0014 18.7 2.0 21 75-95 38-58 (101)
389 COG1889 NOP1 Fibrillarin-like 26.0 2.3E+02 0.0049 19.5 8.4 68 22-111 156-228 (231)
390 PF08714 Fae: Formaldehyde-act 26.0 68 0.0015 20.8 2.1 27 9-35 103-129 (159)
391 COG1064 AdhP Zn-dependent alco 25.9 1.5E+02 0.0032 21.7 4.1 23 27-49 240-262 (339)
392 PF08564 CDC37_C: Cdc37 C term 25.9 17 0.00038 21.5 -0.5 27 9-35 36-62 (99)
393 cd00132 CRIB PAK (p21 activate 25.8 67 0.0015 15.6 1.7 14 81-94 28-41 (42)
394 COG0541 Ffh Signal recognition 25.8 1.8E+02 0.0039 22.2 4.6 44 9-52 184-227 (451)
395 PRK00748 1-(5-phosphoribosyl)- 25.6 1.7E+02 0.0038 19.4 4.3 24 74-97 195-218 (233)
396 COG3910 Predicted ATPase [Gene 25.5 1.3E+02 0.0029 20.5 3.5 27 21-47 160-186 (233)
397 PF06153 DUF970: Protein of un 25.5 85 0.0018 19.0 2.4 25 80-104 12-36 (109)
398 PRK09472 ftsA cell division pr 25.4 1.9E+02 0.0042 21.4 4.8 80 19-100 103-187 (420)
399 PRK00453 rpsF 30S ribosomal pr 25.2 1.1E+02 0.0025 17.9 3.0 28 20-47 14-42 (108)
400 PRK00103 rRNA large subunit me 25.1 1.9E+02 0.0042 18.5 4.7 66 25-91 16-92 (157)
401 PF05706 CDKN3: Cyclin-depende 24.9 68 0.0015 21.0 2.1 22 24-45 118-139 (168)
402 PRK06824 translation initiatio 24.9 1.8E+02 0.0038 17.9 5.5 50 20-96 65-114 (118)
403 KOG3085 Predicted hydrolase (H 24.8 2E+02 0.0043 19.9 4.4 75 25-102 118-192 (237)
404 COG1060 ThiH Thiamine biosynth 24.5 91 0.002 23.0 2.9 25 77-101 335-359 (370)
405 TIGR00150 HI0065_YjeE ATPase, 24.4 1.8E+02 0.004 18.0 3.9 26 21-46 4-29 (133)
406 PF13137 DUF3983: Protein of u 24.4 38 0.00083 15.9 0.6 17 77-93 18-34 (34)
407 COG0279 GmhA Phosphoheptose is 24.3 1.1E+02 0.0023 20.2 2.8 24 24-47 26-49 (176)
408 cd01414 SAICAR_synt_Sc non-met 24.2 1.8E+02 0.0038 20.7 4.2 49 39-96 202-251 (279)
409 TIGR00497 hsdM type I restrict 24.1 1.4E+02 0.0031 22.8 3.9 37 9-46 319-355 (501)
410 PRK05298 excinuclease ABC subu 24.1 70 0.0015 25.4 2.4 31 75-105 163-193 (652)
411 PF01250 Ribosomal_S6: Ribosom 24.0 90 0.0019 17.6 2.3 29 19-47 12-41 (92)
412 PF07647 SAM_2: SAM domain (St 24.0 88 0.0019 16.2 2.2 16 79-94 4-19 (66)
413 PRK05473 hypothetical protein; 24.0 64 0.0014 18.7 1.6 22 20-41 15-36 (86)
414 COG1041 Predicted DNA modifica 24.0 95 0.0021 22.8 2.8 23 25-47 289-311 (347)
415 PRK13683 hypothetical protein; 23.9 71 0.0015 18.5 1.8 24 20-43 20-44 (87)
416 PF07530 PRE_C2HC: Associated 23.9 1.2E+02 0.0027 16.5 2.7 20 82-101 2-21 (68)
417 PRK11057 ATP-dependent DNA hel 23.8 3.4E+02 0.0074 21.3 6.0 63 23-91 414-476 (607)
418 cd04883 ACT_AcuB C-terminal AC 23.7 92 0.002 16.2 2.2 17 80-96 53-69 (72)
419 cd00032 CASc Caspase, interleu 23.7 1.9E+02 0.0041 19.6 4.2 20 78-97 31-50 (243)
420 COG4808 Uncharacterized protei 23.6 75 0.0016 20.2 2.0 21 76-96 131-151 (152)
421 PTZ00311 phosphoenolpyruvate c 23.6 2.9E+02 0.0063 21.8 5.4 46 9-54 97-142 (561)
422 PF05046 Img2: Mitochondrial l 23.6 69 0.0015 18.3 1.7 14 80-93 74-87 (87)
423 PRK02289 4-oxalocrotonate taut 23.5 1.2E+02 0.0026 15.6 2.7 23 15-37 7-29 (60)
424 PLN02668 indole-3-acetate carb 23.4 1.3E+02 0.0027 22.5 3.4 24 27-50 218-241 (386)
425 cd02554 PseudoU_synth_RluF Pse 23.4 1.2E+02 0.0026 19.5 3.0 21 81-101 119-139 (164)
426 PF06258 Mito_fiss_Elm1: Mitoc 23.3 96 0.0021 22.2 2.8 32 15-46 157-189 (311)
427 PF00750 tRNA-synt_1d: tRNA sy 23.3 3E+02 0.0065 20.0 6.7 62 27-102 4-67 (354)
428 PF08245 Mur_ligase_M: Mur lig 23.2 2.1E+02 0.0045 18.1 4.2 37 9-45 73-114 (188)
429 PF13405 EF-hand_6: EF-hand do 23.2 73 0.0016 13.9 1.5 16 77-92 15-31 (31)
430 PRK12557 H(2)-dependent methyl 23.1 2.3E+02 0.005 20.6 4.7 29 8-41 82-111 (342)
431 PRK09902 hypothetical protein; 23.0 34 0.00075 23.2 0.4 35 17-51 122-163 (216)
432 PF09286 Pro-kuma_activ: Pro-k 22.9 85 0.0018 19.3 2.2 19 80-98 63-81 (143)
433 PRK02304 adenine phosphoribosy 22.8 2.2E+02 0.0047 18.2 4.8 20 80-99 129-148 (175)
434 COG1243 ELP3 Histone acetyltra 22.8 3.7E+02 0.008 20.9 6.6 29 9-37 136-164 (515)
435 KOG3571 Dishevelled 3 and rela 22.7 3.1E+02 0.0067 21.6 5.3 37 8-46 299-338 (626)
436 PF12101 DUF3577: Protein of u 22.6 1.4E+02 0.0029 18.9 3.0 29 20-48 58-86 (137)
437 PLN02958 diacylglycerol kinase 22.5 3.6E+02 0.0078 20.6 6.0 40 11-50 80-123 (481)
438 PRK07680 late competence prote 22.4 2.7E+02 0.0058 19.1 4.8 31 8-43 63-93 (273)
439 TIGR00530 AGP_acyltrn 1-acyl-s 22.4 1.3E+02 0.0028 17.5 2.9 22 23-44 73-94 (130)
440 PRK14818 NADH dehydrogenase su 22.3 2.3E+02 0.005 18.7 4.1 36 4-44 66-102 (173)
441 TIGR01202 bchC 2-desacetyl-2-h 22.3 98 0.0021 21.6 2.7 21 27-47 212-232 (308)
442 COG0347 GlnK Nitrogen regulato 22.3 1.5E+02 0.0032 18.1 3.0 22 80-101 12-33 (112)
443 cd07986 LPLAT_ACT14924-like Ly 22.3 1.2E+02 0.0026 20.0 3.0 22 24-45 83-104 (210)
444 PRK10475 23S rRNA pseudouridin 22.3 1.2E+02 0.0027 21.4 3.1 21 81-101 186-206 (290)
445 PHA00457 inhibitor of host bac 22.2 1.1E+02 0.0025 16.4 2.2 14 88-101 47-60 (63)
446 PRK03341 arginine repressor; P 22.0 66 0.0014 21.0 1.6 22 75-96 26-47 (168)
447 PRK10309 galactitol-1-phosphat 22.0 1E+02 0.0022 21.8 2.7 23 27-49 241-263 (347)
448 TIGR03798 ocin_TIGR03798 bacte 22.0 1E+02 0.0023 16.3 2.2 18 79-96 25-42 (64)
449 PF13523 Acetyltransf_8: Acety 21.9 1.5E+02 0.0033 17.9 3.3 23 82-104 125-147 (152)
450 KOG1712 Adenine phosphoribosyl 21.8 2.5E+02 0.0054 18.5 5.0 39 8-51 96-134 (183)
451 TIGR00274 N-acetylmuramic acid 21.8 1.2E+02 0.0027 21.4 3.1 23 25-47 43-65 (291)
452 PRK12570 N-acetylmuramic acid- 21.7 1.1E+02 0.0024 21.7 2.8 23 25-47 44-66 (296)
453 PF08671 SinI: Anti-repressor 21.7 69 0.0015 14.6 1.2 15 82-96 3-20 (30)
454 KOG3431 Apoptosis-related prot 21.6 1.8E+02 0.0039 18.1 3.3 32 13-44 82-114 (129)
455 PF14794 DUF4479: Domain of un 21.6 80 0.0017 17.5 1.7 15 82-96 54-68 (73)
456 cd08237 ribitol-5-phosphate_DH 21.6 1.2E+02 0.0025 21.5 2.9 21 27-47 237-257 (341)
457 PF02794 HlyC: RTX toxin acylt 21.5 1.8E+02 0.0038 18.1 3.4 41 10-52 47-91 (133)
458 COG0075 Serine-pyruvate aminot 21.5 1.7E+02 0.0037 21.8 3.7 27 75-101 113-140 (383)
459 TIGR00423 radical SAM domain p 21.5 1.1E+02 0.0023 21.7 2.7 23 79-101 283-305 (309)
460 PF15072 DUF4539: Domain of un 21.2 92 0.002 17.9 1.9 23 26-48 38-60 (86)
461 PF06135 DUF965: Bacterial pro 21.2 61 0.0013 18.4 1.1 20 22-41 14-33 (79)
462 TIGR03572 WbuZ glycosyl amidat 21.1 2.3E+02 0.0051 18.9 4.2 25 74-98 202-226 (232)
463 PF14001 YdfZ: YdfZ protein 21.1 61 0.0013 17.6 1.1 16 32-47 6-21 (64)
464 PRK08868 flagellar protein Fla 21.0 1.2E+02 0.0025 19.4 2.5 27 16-42 114-140 (144)
465 KOG3451 Uncharacterized conser 20.9 1.1E+02 0.0025 16.8 2.1 26 22-47 13-38 (71)
466 PF08351 DUF1726: Domain of un 20.9 1.2E+02 0.0025 17.6 2.3 38 9-51 13-50 (92)
467 TIGR02819 fdhA_non_GSH formald 20.7 1.2E+02 0.0025 22.3 2.8 22 27-48 280-301 (393)
468 PF01536 SAM_decarbox: Adenosy 20.7 1.9E+02 0.004 21.1 3.8 26 77-102 31-56 (331)
469 COG3640 CooC CO dehydrogenase 20.7 2.3E+02 0.0049 19.9 4.0 71 25-98 118-190 (255)
470 PF08676 MutL_C: MutL C termin 20.7 2.1E+02 0.0046 17.4 3.9 17 81-97 68-84 (144)
471 KOG1092 Ypt/Rab-specific GTPas 20.7 92 0.002 23.7 2.2 18 17-34 454-471 (484)
472 PF04361 DUF494: Protein of un 20.6 44 0.00095 21.4 0.5 23 77-99 19-41 (155)
473 TIGR03318 YdfZ_fam putative se 20.5 78 0.0017 17.2 1.4 17 31-47 6-22 (65)
474 PF02913 FAD-oxidase_C: FAD li 20.5 73 0.0016 20.9 1.7 20 23-42 224-243 (248)
475 TIGR02822 adh_fam_2 zinc-bindi 20.5 1.2E+02 0.0027 21.3 2.9 22 27-48 235-256 (329)
476 COG5125 Uncharacterized conser 20.4 3E+02 0.0064 18.9 4.7 30 24-53 161-190 (259)
477 smart00596 PRE_C2HC PRE_C2HC d 20.4 1.6E+02 0.0035 16.3 2.7 20 82-101 2-21 (69)
478 cd03142 GATase1_ThuA Type 1 gl 20.4 2.5E+02 0.0055 19.0 4.2 35 9-47 60-96 (215)
479 PHA01782 hypothetical protein 20.4 34 0.00073 22.3 -0.0 16 26-41 53-68 (177)
480 PRK06402 rpl12p 50S ribosomal 20.3 1E+02 0.0022 18.6 2.0 23 74-96 12-34 (106)
481 PF07076 DUF1344: Protein of u 20.3 87 0.0019 16.9 1.6 18 33-50 35-52 (61)
482 cd05831 Ribosomal_P1 Ribosomal 20.2 1.2E+02 0.0026 18.0 2.4 24 74-97 13-36 (103)
483 COG2085 Predicted dinucleotide 20.2 1.3E+02 0.0029 20.4 2.8 33 8-47 61-93 (211)
484 cd00173 SH2 Src homology 2 dom 20.2 1.6E+02 0.0034 16.2 2.8 25 19-48 6-30 (94)
485 PF10237 N6-adenineMlase: Prob 20.1 2.4E+02 0.0053 18.2 3.9 27 21-47 8-34 (162)
486 TIGR03366 HpnZ_proposed putati 20.1 1.3E+02 0.0028 20.6 2.8 23 27-49 199-221 (280)
487 PRK09880 L-idonate 5-dehydroge 20.1 1.2E+02 0.0025 21.5 2.7 21 27-47 247-267 (343)
488 PF02388 FemAB: FemAB family; 20.0 2.1E+02 0.0046 21.2 4.1 71 9-97 64-139 (406)
489 PF08149 BING4CT: BING4CT (NUC 20.0 1.8E+02 0.004 16.6 2.9 18 75-92 55-72 (80)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.94 E-value=9.2e-27 Score=162.35 Aligned_cols=112 Identities=45% Similarity=0.758 Sum_probs=99.6
Q ss_pred CCCCCCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC-CCchhhhhhhhhchhhhhcCCCceec
Q 038113 1 MFQNVAKGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLP-ETRTLSKIISQGDVLMMTQNPGGKER 79 (112)
Q Consensus 1 ~f~~~P~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~r 79 (112)
||+..|.+|+||++|+||||+|++|+++|+||+++|+|||+|+|+|.+.++.. ..+..++.....|+.|+..+.+|++|
T Consensus 230 mfq~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gker 309 (342)
T KOG3178|consen 230 MFQDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKER 309 (342)
T ss_pred ccccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceec
Confidence 78779999999999999999999999999999999999999999999998632 22222345667899999988779999
Q ss_pred CHHHHHHHHHhcCCCeeEEEEeCCceEEEEEEC
Q 038113 80 TKHELMTLVTGAGFGGIRFESFICNLWVMEFYK 112 (112)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 112 (112)
+.+||+.++.++||.+.++...+...++||++|
T Consensus 310 t~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 310 TLKEFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred cHHHHHhcchhhcCceeEEEeccCccchheeCC
Confidence 999999999999999999999988999999987
No 2
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.91 E-value=1.8e-24 Score=146.64 Aligned_cols=88 Identities=30% Similarity=0.582 Sum_probs=76.0
Q ss_pred CCCCCCcccEEEeccccccCChHHHHHHHHHHHhhCCCC--CEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCcee
Q 038113 1 MFQNVAKGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKD--GMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKE 78 (112)
Q Consensus 1 ~f~~~P~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pg--g~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 78 (112)
||+++|.+|+|++++|||+|+|++|.+||++++++|+|| |+|+|+|.+.++....+........+|+.|++.+ +|++
T Consensus 152 ~f~~~P~~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~ 230 (241)
T PF00891_consen 152 FFDPLPVADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKE 230 (241)
T ss_dssp TTTCCSSESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-
T ss_pred HHhhhccccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCC
Confidence 679999999999999999999999999999999999999 9999999999988766543222357999999876 6999
Q ss_pred cCHHHHHHHHH
Q 038113 79 RTKHELMTLVT 89 (112)
Q Consensus 79 rt~~e~~~ll~ 89 (112)
||.+||++||+
T Consensus 231 rt~~e~~~ll~ 241 (241)
T PF00891_consen 231 RTEEEWEALLK 241 (241)
T ss_dssp EEHHHHHHHHH
T ss_pred cCHHHHHHHhC
Confidence 99999999985
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.71 E-value=1e-16 Score=112.17 Aligned_cols=96 Identities=10% Similarity=0.196 Sum_probs=69.8
Q ss_pred CC-CCCCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhh-hhhchhhhhcCCCcee
Q 038113 1 MF-QNVAKGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKII-SQGDVLMMTQNPGGKE 78 (112)
Q Consensus 1 ~f-~~~P~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~ 78 (112)
|| +++|++|+|++++++|+|+++++.++|++++++|+|||+++|.|.+.++...+ ...... ......|... -...
T Consensus 208 ~~~~~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~ 284 (306)
T TIGR02716 208 IYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENP-NFDYLSHYILGAGMPFS--VLGF 284 (306)
T ss_pred ccCCCCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc-hhhHHHHHHHHcccccc--cccC
Confidence 45 45677799999999999999999999999999999999999999988765422 111111 1111222211 1123
Q ss_pred cCHHHHHHHHHhcCCCeeEEE
Q 038113 79 RTKHELMTLVTGAGFGGIRFE 99 (112)
Q Consensus 79 rt~~e~~~ll~~aGf~~~~~~ 99 (112)
++.++|.+||+++||+.++++
T Consensus 285 ~~~~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 285 KEQARYKEILESLGYKDVTMV 305 (306)
T ss_pred CCHHHHHHHHHHcCCCeeEec
Confidence 458999999999999988764
No 4
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.34 E-value=2.6e-12 Score=85.55 Aligned_cols=78 Identities=21% Similarity=0.433 Sum_probs=63.6
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLV 88 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 88 (112)
|+||+.|++-+++|++.++.|++|+++|+|+|.++|-|.+..... ..+|- ..++-.||.+.|++++
T Consensus 124 DlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D~-----~DsSvTRs~~~~~~lF 189 (218)
T PF05891_consen 124 DLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFDE-----EDSSVTRSDEHFRELF 189 (218)
T ss_dssp EEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEET-----TTTEEEEEHHHHHHHH
T ss_pred eEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccCC-----ccCeeecCHHHHHHHH
Confidence 999999999999999999999999999999999999999987542 11232 2356779999999999
Q ss_pred HhcCCCeeEEEE
Q 038113 89 TGAGFGGIRFES 100 (112)
Q Consensus 89 ~~aGf~~~~~~~ 100 (112)
++||+++++...
T Consensus 190 ~~AGl~~v~~~~ 201 (218)
T PF05891_consen 190 KQAGLRLVKEEK 201 (218)
T ss_dssp HHCT-EEEEEEE
T ss_pred HHcCCEEEEecc
Confidence 999999987543
No 5
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.26 E-value=2.8e-12 Score=86.92 Aligned_cols=105 Identities=10% Similarity=0.107 Sum_probs=68.7
Q ss_pred CcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchh--hhhhhhh---ch-------hhhhcC
Q 038113 6 AKGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTL--SKIISQG---DV-------LMMTQN 73 (112)
Q Consensus 6 P~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~--~~~~~~~---~~-------~~~~~~ 73 (112)
|+.|++++..++|++++++..++|++++++|+|||++++.|.+.++++..... ....... +. ......
T Consensus 121 ~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 200 (239)
T TIGR00740 121 KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALE 200 (239)
T ss_pred CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 44699999999999999888999999999999999999999877654322110 0000000 00 000000
Q ss_pred CCceecCHHHHHHHHHhcCCCeeEEEEeCCceEEEEE
Q 038113 74 PGGKERTKHELMTLVTGAGFGGIRFESFICNLWVMEF 110 (112)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~ 110 (112)
..-+..|.+++.+++++|||+.+++.......+++.+
T Consensus 201 ~~~~~~s~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~ 237 (239)
T TIGR00740 201 NVMRTDSIETHKARLKNVGFSHVELWFQCFNFGSLVA 237 (239)
T ss_pred ccCCCCCHHHHHHHHHHcCCchHHHHHHHHhHhHHhe
Confidence 0123569999999999999998765444333443333
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.21 E-value=2.1e-10 Score=78.96 Aligned_cols=98 Identities=22% Similarity=0.210 Sum_probs=66.3
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhh--h-hcCCC----------
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLM--M-TQNPG---------- 75 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~---------- 75 (112)
|+|++..++|+++|. .++|+++++.|+|||++++.|...++.+..+.... ..+...+ . .....
T Consensus 147 D~V~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~y~~l~~s 222 (261)
T PLN02233 147 DAITMGYGLRNVVDR--LKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQE--WMIDNVVVPVATGYGLAKEYEYLKSS 222 (261)
T ss_pred eEEEEecccccCCCH--HHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHH--HHHhhhhhHHHHHhCChHHHHHHHHH
Confidence 999999999999874 68999999999999999999987665422111100 0010000 0 00000
Q ss_pred -ceecCHHHHHHHHHhcCCCeeEEEEeCCc-eEEEEE
Q 038113 76 -GKERTKHELMTLVTGAGFGGIRFESFICN-LWVMEF 110 (112)
Q Consensus 76 -g~~rt~~e~~~ll~~aGf~~~~~~~~~~~-~~vie~ 110 (112)
....+.+++.++|+++||+.++.....++ .++..+
T Consensus 223 ~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 259 (261)
T PLN02233 223 INEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVA 259 (261)
T ss_pred HHhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEE
Confidence 12458999999999999999988887644 444433
No 7
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.15 E-value=4.5e-10 Score=77.39 Aligned_cols=91 Identities=19% Similarity=0.256 Sum_probs=65.8
Q ss_pred CCCcc--cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCH
Q 038113 4 NVAKG--DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTK 81 (112)
Q Consensus 4 ~~P~~--D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~ 81 (112)
++|++ |+|+...++|+++.++..++|+++++.|+|||++++.|........... ....... .......+.
T Consensus 112 ~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~--~~~~~~~------~~~~~~~~~ 183 (263)
T PTZ00098 112 DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDE--EFKAYIK------KRKYTLIPI 183 (263)
T ss_pred CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHH--HHHHHHH------hcCCCCCCH
Confidence 45543 9999999998898777899999999999999999999987654321111 0100000 001123588
Q ss_pred HHHHHHHHhcCCCeeEEEEeC
Q 038113 82 HELMTLVTGAGFGGIRFESFI 102 (112)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~~~~ 102 (112)
++|.++|+++||+.++.....
T Consensus 184 ~~~~~~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 184 QEYGDLIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHHHHHHCCCCeeeEEeCc
Confidence 999999999999999887653
No 8
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.15 E-value=2.7e-10 Score=73.13 Aligned_cols=91 Identities=23% Similarity=0.166 Sum_probs=61.4
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhh---hcCCC----------
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMM---TQNPG---------- 75 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---------- 75 (112)
|+|++..++|+++| ..+.|+++++.|+|||+++|.|...++..-..... ......... .....
T Consensus 46 D~v~~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~y~yl~~s 121 (160)
T PLN02232 46 DAVTMGYGLRNVVD--RLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQ--GWMIDNVVVPVATVYDLAKEYEYLKYS 121 (160)
T ss_pred eEEEecchhhcCCC--HHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHH--HHHccchHhhhhHHhCChHHHHhHHHH
Confidence 99999999999987 46899999999999999999998765432110000 000000000 00000
Q ss_pred -ceecCHHHHHHHHHhcCCCeeEEEEeCC
Q 038113 76 -GKERTKHELMTLVTGAGFGGIRFESFIC 103 (112)
Q Consensus 76 -g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 103 (112)
....+.+++.++|+++||+.++......
T Consensus 122 i~~f~~~~el~~ll~~aGF~~~~~~~~~~ 150 (160)
T PLN02232 122 INGYLTGEELETLALEAGFSSACHYEISG 150 (160)
T ss_pred HHHCcCHHHHHHHHHHcCCCcceEEECcc
Confidence 1234889999999999999998777643
No 9
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.13 E-value=2.4e-11 Score=82.36 Aligned_cols=105 Identities=19% Similarity=0.280 Sum_probs=38.6
Q ss_pred CCCcc--cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhc-hhhh---hcCCC--
Q 038113 4 NVAKG--DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGD-VLMM---TQNPG-- 75 (112)
Q Consensus 4 ~~P~~--D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~-- 75 (112)
|+|+. |+|+++..||+++|. .+.|+++++.|+|||+++|+|...++.+.-... +...+. +... ....+
T Consensus 111 p~~d~sfD~v~~~fglrn~~d~--~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~--~~~y~~~ilP~~g~l~~~~~~ 186 (233)
T PF01209_consen 111 PFPDNSFDAVTCSFGLRNFPDR--ERALREMYRVLKPGGRLVILEFSKPRNPLLRAL--YKFYFKYILPLIGRLLSGDRE 186 (233)
T ss_dssp -S-TT-EEEEEEES-GGG-SSH--HHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHH--HHH------------------
T ss_pred cCCCCceeEEEHHhhHHhhCCH--HHHHHHHHHHcCCCeEEEEeeccCCCCchhhce--eeeeecccccccccccccccc
Confidence 34544 999999999999984 579999999999999999999988765311100 000000 0000 00001
Q ss_pred ---------ceecCHHHHHHHHHhcCCCeeEEEEeC-CceEEEEEEC
Q 038113 76 ---------GKERTKHELMTLVTGAGFGGIRFESFI-CNLWVMEFYK 112 (112)
Q Consensus 76 ---------g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~ 112 (112)
.+..+.+++.++|+++||+.++..+.. |..++..++|
T Consensus 187 ~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 187 AYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp -----------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 012367899999999999999887764 4456665554
No 10
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.05 E-value=7.4e-10 Score=75.60 Aligned_cols=93 Identities=11% Similarity=0.122 Sum_probs=62.4
Q ss_pred CcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCch-h-h---hhhhhhchhh-----h-hcCC
Q 038113 6 AKGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRT-L-S---KIISQGDVLM-----M-TQNP 74 (112)
Q Consensus 6 P~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~-~-~---~~~~~~~~~~-----~-~~~~ 74 (112)
++.|++++..++|++++++...++++++++|+|||.+++.|.+..++..... . . .+....+... . ....
T Consensus 124 ~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~ 203 (247)
T PRK15451 124 ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLE 203 (247)
T ss_pred CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3459999999999999888899999999999999999999987665432211 0 0 0000000000 0 0000
Q ss_pred C-ceecCHHHHHHHHHhcCCCeeEE
Q 038113 75 G-GKERTKHELMTLVTGAGFGGIRF 98 (112)
Q Consensus 75 ~-g~~rt~~e~~~ll~~aGf~~~~~ 98 (112)
+ -...|.++..+||++|||+.+++
T Consensus 204 ~~~~~~~~~~~~~~L~~aGF~~v~~ 228 (247)
T PRK15451 204 NVMLTDSVETHKARLHKAGFEHSEL 228 (247)
T ss_pred hhcccCCHHHHHHHHHHcCchhHHH
Confidence 1 12348999999999999997654
No 11
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.04 E-value=4.5e-09 Score=71.39 Aligned_cols=103 Identities=19% Similarity=0.290 Sum_probs=69.9
Q ss_pred CCCcc--cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchh-hhh----cCC-C
Q 038113 4 NVAKG--DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVL-MMT----QNP-G 75 (112)
Q Consensus 4 ~~P~~--D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~-~ 75 (112)
|+|+. |+|.+++.||+++| ..+.|+++++.|+|||++++.|...++.+.... ....+... .+- ... +
T Consensus 114 Pf~D~sFD~vt~~fglrnv~d--~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~---~~~~~~~~~v~P~~g~~~~~~ 188 (238)
T COG2226 114 PFPDNSFDAVTISFGLRNVTD--IDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRK---AYILYYFKYVLPLIGKLVAKD 188 (238)
T ss_pred CCCCCccCEEEeeehhhcCCC--HHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHH---HHHHHHHHhHhhhhceeeecC
Confidence 45654 99999999999998 568999999999999999999998876543211 11112211 110 000 1
Q ss_pred c-----------eecCHHHHHHHHHhcCCCeeEEEEeC-CceEEEEEE
Q 038113 76 G-----------KERTKHELMTLVTGAGFGGIRFESFI-CNLWVMEFY 111 (112)
Q Consensus 76 g-----------~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~ 111 (112)
. +..+.+++.++++++||+.+...... |...+..+.
T Consensus 189 ~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~ 236 (238)
T COG2226 189 AEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGY 236 (238)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEe
Confidence 1 22377899999999999998865554 444444443
No 12
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.02 E-value=6.2e-09 Score=69.88 Aligned_cols=99 Identities=21% Similarity=0.273 Sum_probs=68.9
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhh----hcCCC---------
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMM----TQNPG--------- 75 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------- 75 (112)
|+|++++++|++++ ...+|+++.+.|+|||++++++...+.... .......+...+. ....+
T Consensus 123 D~I~~~~~l~~~~~--~~~~l~~~~~~L~~gG~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (239)
T PRK00216 123 DAVTIAFGLRNVPD--IDKALREMYRVLKPGGRLVILEFSKPTNPP---LKKAYDFYLFKVLPLIGKLISKNAEAYSYLA 197 (239)
T ss_pred cEEEEecccccCCC--HHHHHHHHHHhccCCcEEEEEEecCCCchH---HHHHHHHHHHhhhHHHHHHHcCCcHHHHHHH
Confidence 99999999999987 468999999999999999999987654321 0000000000000 00001
Q ss_pred ---ceecCHHHHHHHHHhcCCCeeEEEEe-CCceEEEEEEC
Q 038113 76 ---GKERTKHELMTLVTGAGFGGIRFESF-ICNLWVMEFYK 112 (112)
Q Consensus 76 ---g~~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~vie~~~ 112 (112)
...++.++|.++|+++||+.+++.+. .+..+++.++|
T Consensus 198 ~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 198 ESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 12347889999999999999999886 46788888875
No 13
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.00 E-value=8.5e-09 Score=68.56 Aligned_cols=100 Identities=19% Similarity=0.221 Sum_probs=68.1
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhc-------CCC-----
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQ-------NPG----- 75 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----- 75 (112)
.|+++++.++|+.++ ...+++++++.|+|||++++.+...+... +... ....+...++.. ..+
T Consensus 107 ~D~i~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (223)
T TIGR01934 107 FDAVTIAFGLRNVTD--IQKALREMYRVLKPGGRLVILEFSKPANA--LLKK-FYKFYLKNVLPSIGGLISKNAEAYTYL 181 (223)
T ss_pred EEEEEEeeeeCCccc--HHHHHHHHHHHcCCCcEEEEEEecCCCch--hhHH-HHHHHHHHhhhhhhhhhcCCchhhHHH
Confidence 399999999999887 46899999999999999999997654331 1000 000000000000 000
Q ss_pred ----ceecCHHHHHHHHHhcCCCeeEEEEeCCc-eEEEEEEC
Q 038113 76 ----GKERTKHELMTLVTGAGFGGIRFESFICN-LWVMEFYK 112 (112)
Q Consensus 76 ----g~~rt~~e~~~ll~~aGf~~~~~~~~~~~-~~vie~~~ 112 (112)
....+.++|.++|+++||+.+++.+..+. ..+++++|
T Consensus 182 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 182 PESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 12347889999999999999999888654 66787775
No 14
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.00 E-value=1.5e-09 Score=68.66 Aligned_cols=81 Identities=17% Similarity=0.139 Sum_probs=59.8
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLV 88 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 88 (112)
|+|++.++||+++| ..++|+++.+.|+|||.+++.++..+.. ... .... +...... ......+|.++|++++
T Consensus 80 D~i~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~~~~~~~~~~-~~~---~~~~-~~~~~~~-~~~~~~~~~~~~~~ll 151 (161)
T PF13489_consen 80 DLIICNDVLEHLPD--PEEFLKELSRLLKPGGYLVISDPNRDDP-SPR---SFLK-WRYDRPY-GGHVHFFSPDELRQLL 151 (161)
T ss_dssp EEEEEESSGGGSSH--HHHHHHHHHHCEEEEEEEEEEEEBTTSH-HHH---HHHH-CCGTCHH-TTTTEEBBHHHHHHHH
T ss_pred hhHhhHHHHhhccc--HHHHHHHHHHhcCCCCEEEEEEcCCcch-hhh---HHHh-cCCcCcc-CceeccCCHHHHHHHH
Confidence 99999999999997 6799999999999999999999876431 110 0111 1111110 0245678999999999
Q ss_pred HhcCCCeeE
Q 038113 89 TGAGFGGIR 97 (112)
Q Consensus 89 ~~aGf~~~~ 97 (112)
+++||++++
T Consensus 152 ~~~G~~iv~ 160 (161)
T PF13489_consen 152 EQAGFEIVE 160 (161)
T ss_dssp HHTTEEEEE
T ss_pred HHCCCEEEE
Confidence 999999875
No 15
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.99 E-value=4.9e-09 Score=70.53 Aligned_cols=99 Identities=19% Similarity=0.297 Sum_probs=67.7
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhh-hhchhhhh---------------c
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIIS-QGDVLMMT---------------Q 72 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~-~~~~~~~~---------------~ 72 (112)
|+|++...+|++++. .++|+++.+.|+|||++++.+...+..+. ...... .+...+-. .
T Consensus 116 D~V~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 190 (231)
T TIGR02752 116 DYVTIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPTIPG---FKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQ 190 (231)
T ss_pred cEEEEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCCChH---HHHHHHHHHcChhHHhhHHhcCCHHHHHHHH
Confidence 999999999999875 58999999999999999998875543221 100000 00000000 0
Q ss_pred CCCceecCHHHHHHHHHhcCCCeeEEEEeC-CceEEEEEEC
Q 038113 73 NPGGKERTKHELMTLVTGAGFGGIRFESFI-CNLWVMEFYK 112 (112)
Q Consensus 73 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~ 112 (112)
.......+.+++.++|+++||+.+++.... |..+++.++|
T Consensus 191 ~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 191 ESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 001123478999999999999999998886 6677877776
No 16
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.98 E-value=6.2e-09 Score=69.03 Aligned_cols=101 Identities=18% Similarity=0.129 Sum_probs=81.4
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLV 88 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 88 (112)
|+++..|++|-.+-+.+..+++.+.+.|+|||.|++.-+...+..-.+. + ...||.....-.+....|+.+++.++.
T Consensus 104 D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~-S--N~~FD~sLr~rdp~~GiRD~e~v~~lA 180 (204)
T PF06080_consen 104 DAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE-S--NAAFDASLRSRDPEWGIRDIEDVEALA 180 (204)
T ss_pred ceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc-H--HHHHHHHHhcCCCCcCccCHHHHHHHH
Confidence 9999999999999999999999999999999999999987765421111 0 134565554434456789999999999
Q ss_pred HhcCCCeeEEEEeCCceEEEEEEC
Q 038113 89 TGAGFGGIRFESFICNLWVMEFYK 112 (112)
Q Consensus 89 ~~aGf~~~~~~~~~~~~~vie~~~ 112 (112)
+++||+.++.+.++.+.-++.++|
T Consensus 181 ~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 181 AAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HHCCCccCcccccCCCCeEEEEeC
Confidence 999999999999987766666665
No 17
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.98 E-value=6.2e-09 Score=74.11 Aligned_cols=79 Identities=19% Similarity=0.304 Sum_probs=59.5
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLV 88 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 88 (112)
|+|+..+++|++++. .++|+++++.|+|||++++.+.+.++.... + ...+..+ ...+.+|+.++|
T Consensus 180 DvVIs~~~L~~~~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~----r--~~~~~~~-------~~~t~eEl~~lL 244 (340)
T PLN02490 180 DRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACLIGPVHPTFWLS----R--FFADVWM-------LFPKEEEYIEWF 244 (340)
T ss_pred eEEEEcChhhhCCCH--HHHHHHHHHhcCCCcEEEEEEecCcchhHH----H--Hhhhhhc-------cCCCHHHHHHHH
Confidence 999999999999986 479999999999999999987655432111 0 0111111 125799999999
Q ss_pred HhcCCCeeEEEEeC
Q 038113 89 TGAGFGGIRFESFI 102 (112)
Q Consensus 89 ~~aGf~~~~~~~~~ 102 (112)
+++||+.+++.++.
T Consensus 245 ~~aGF~~V~i~~i~ 258 (340)
T PLN02490 245 TKAGFKDVKLKRIG 258 (340)
T ss_pred HHCCCeEEEEEEcC
Confidence 99999999988764
No 18
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.93 E-value=1.2e-08 Score=70.27 Aligned_cols=83 Identities=17% Similarity=0.299 Sum_probs=60.8
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLV 88 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 88 (112)
|+|+...++|++++. .++++++++.|+|||++++.+....... ... ...+..+.. ...+...+.++|.++|
T Consensus 148 D~Vi~~~v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~~~-~~~-----~~~~~~~~~-~~~~~~~~~~e~~~~l 218 (272)
T PRK11873 148 DVIISNCVINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRGEL-PEE-----IRNDAELYA-GCVAGALQEEEYLAML 218 (272)
T ss_pred eEEEEcCcccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccCCC-CHH-----HHHhHHHHh-ccccCCCCHHHHHHHH
Confidence 999999999998874 5799999999999999999998765432 111 111122221 1134556899999999
Q ss_pred HhcCCCeeEEEE
Q 038113 89 TGAGFGGIRFES 100 (112)
Q Consensus 89 ~~aGf~~~~~~~ 100 (112)
+++||..+++..
T Consensus 219 ~~aGf~~v~i~~ 230 (272)
T PRK11873 219 AEAGFVDITIQP 230 (272)
T ss_pred HHCCCCceEEEe
Confidence 999999987754
No 19
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.89 E-value=2.3e-08 Score=70.79 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=60.2
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCch--hhhhhhhhchhhhhcCCCceecCHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRT--LSKIISQGDVLMMTQNPGGKERTKHELMT 86 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 86 (112)
|+|++..++||..|. ..+|+++++.|+|||++++.+.+.+.+..... ..++ ..|. ..-..+|.+++.+
T Consensus 191 D~V~s~~vl~H~~dp--~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y-----~~~~---~~~~lps~~~l~~ 260 (322)
T PRK15068 191 DTVFSMGVLYHRRSP--LDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRY-----AKMR---NVYFIPSVPALKN 260 (322)
T ss_pred CEEEECChhhccCCH--HHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHH-----hcCc---cceeCCCHHHHHH
Confidence 999999999998874 67999999999999999887766654432110 0111 0110 0112468999999
Q ss_pred HHHhcCCCeeEEEEe
Q 038113 87 LVTGAGFGGIRFESF 101 (112)
Q Consensus 87 ll~~aGf~~~~~~~~ 101 (112)
||+++||+.+++...
T Consensus 261 ~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 261 WLERAGFKDVRIVDV 275 (322)
T ss_pred HHHHcCCceEEEEeC
Confidence 999999999988754
No 20
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.88 E-value=1.8e-08 Score=71.09 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=60.5
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCc--hhhhhhhhhchhhhhcCCCceecCHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETR--TLSKIISQGDVLMMTQNPGGKERTKHELMT 86 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 86 (112)
|+|++..+||++++. ...|++++++|+|||++++.+.+.+.+.... +..++. .|.. .-...|.+++.+
T Consensus 190 D~V~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~-----k~~n---v~flpS~~~L~~ 259 (314)
T TIGR00452 190 DTVFSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYA-----KMKN---VYFIPSVSALKN 259 (314)
T ss_pred CEEEEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHH-----hccc---cccCCCHHHHHH
Confidence 999999999999874 6799999999999999999887765443211 001110 1110 012358999999
Q ss_pred HHHhcCCCeeEEEEe
Q 038113 87 LVTGAGFGGIRFESF 101 (112)
Q Consensus 87 ll~~aGf~~~~~~~~ 101 (112)
||+++||+.+++...
T Consensus 260 ~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 260 WLEKVGFENFRILDV 274 (314)
T ss_pred HHHHCCCeEEEEEec
Confidence 999999999988754
No 21
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.88 E-value=1.8e-08 Score=74.44 Aligned_cols=87 Identities=17% Similarity=0.214 Sum_probs=64.0
Q ss_pred CCCcc--cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCH
Q 038113 4 NVAKG--DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTK 81 (112)
Q Consensus 4 ~~P~~--D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~ 81 (112)
++|++ |+|+...++++++|. .++|+++++.|+|||++++.+.........+.. ...+. ..+...++.
T Consensus 327 ~~~~~~fD~I~s~~~l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~---~~~~~------~~g~~~~~~ 395 (475)
T PLN02336 327 TYPDNSFDVIYSRDTILHIQDK--PALFRSFFKWLKPGGKVLISDYCRSPGTPSPEF---AEYIK------QRGYDLHDV 395 (475)
T ss_pred CCCCCCEEEEEECCcccccCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHH---HHHHH------hcCCCCCCH
Confidence 34543 999999999999874 589999999999999999999876543222111 11111 113356789
Q ss_pred HHHHHHHHhcCCCeeEEEEe
Q 038113 82 HELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~~~ 101 (112)
+++.++++++||+.+++...
T Consensus 396 ~~~~~~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 396 QAYGQMLKDAGFDDVIAEDR 415 (475)
T ss_pred HHHHHHHHHCCCeeeeeecc
Confidence 99999999999999877653
No 22
>PLN02244 tocopherol O-methyltransferase
Probab=98.84 E-value=4.5e-08 Score=69.76 Aligned_cols=95 Identities=16% Similarity=0.142 Sum_probs=61.7
Q ss_pred CCCcc--cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCC-chhh-hhhhhhchhhhhcCCCceec
Q 038113 4 NVAKG--DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPET-RTLS-KIISQGDVLMMTQNPGGKER 79 (112)
Q Consensus 4 ~~P~~--D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~g~~r 79 (112)
++|++ |+|+...++|+++|. .++++++++.|+|||+++|.+......... .... .....++....... .-...
T Consensus 181 ~~~~~~FD~V~s~~~~~h~~d~--~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~ 257 (340)
T PLN02244 181 PFEDGQFDLVWSMESGEHMPDK--RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWC 257 (340)
T ss_pred CCCCCCccEEEECCchhccCCH--HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCCC
Confidence 34543 999999999999884 689999999999999999998754322111 0000 00011111000000 01124
Q ss_pred CHHHHHHHHHhcCCCeeEEEEe
Q 038113 80 TKHELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~ 101 (112)
+.++|.++++++||+.+++...
T Consensus 258 s~~~~~~~l~~aGf~~v~~~d~ 279 (340)
T PLN02244 258 STSDYVKLAESLGLQDIKTEDW 279 (340)
T ss_pred CHHHHHHHHHHCCCCeeEeeeC
Confidence 8899999999999999987754
No 23
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.74 E-value=9.4e-08 Score=64.01 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=59.0
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLV 88 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 88 (112)
|+|+...++|++++ ...+++++++.|+|||++++.+...+... ... ... ......+.++|.+++
T Consensus 69 D~I~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~-----~~~--------~~~~~~s~~~~~~~l 132 (224)
T smart00828 69 DLVFGFEVIHHIKD--KMDLFSNISRHLKDGGHLVLADFIANLLS-AIE-----HEE--------TTSYLVTREEWAELL 132 (224)
T ss_pred CEeehHHHHHhCCC--HHHHHHHHHHHcCCCCEEEEEEcccccCc-ccc-----ccc--------cccccCCHHHHHHHH
Confidence 99999999999987 46899999999999999999987543211 100 000 011235789999999
Q ss_pred HhcCCCeeEEEEeC
Q 038113 89 TGAGFGGIRFESFI 102 (112)
Q Consensus 89 ~~aGf~~~~~~~~~ 102 (112)
+++||+.++.....
T Consensus 133 ~~~Gf~~~~~~~~~ 146 (224)
T smart00828 133 ARNNLRVVEGVDAS 146 (224)
T ss_pred HHCCCeEEEeEECc
Confidence 99999999887654
No 24
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.69 E-value=6.5e-08 Score=68.51 Aligned_cols=91 Identities=12% Similarity=0.016 Sum_probs=58.7
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLV 88 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 88 (112)
|+|++..+||+++|. ..+|+++++.|+|||.++|.........-...............-......+.+|.+|+.++|
T Consensus 200 D~Vi~~~vLeHv~d~--~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL 277 (322)
T PLN02396 200 DAVLSLEVIEHVANP--AEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMIL 277 (322)
T ss_pred CEEEEhhHHHhcCCH--HHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHH
Confidence 999999999999985 589999999999999999987533210000000000000000000000012356999999999
Q ss_pred HhcCCCeeEEEEe
Q 038113 89 TGAGFGGIRFESF 101 (112)
Q Consensus 89 ~~aGf~~~~~~~~ 101 (112)
+++||+++++..+
T Consensus 278 ~~aGf~i~~~~G~ 290 (322)
T PLN02396 278 QRASVDVKEMAGF 290 (322)
T ss_pred HHcCCeEEEEeee
Confidence 9999999987543
No 25
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.69 E-value=8.2e-08 Score=65.57 Aligned_cols=88 Identities=16% Similarity=0.237 Sum_probs=61.2
Q ss_pred CCCcc--cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhh--hhhchh-----------
Q 038113 4 NVAKG--DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKII--SQGDVL----------- 68 (112)
Q Consensus 4 ~~P~~--D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~--~~~~~~----------- 68 (112)
|+|+. |.|.+..-+.+|+| ..+.|+++++.|||||++.+.|+-.-+.+. ...+. ..++..
T Consensus 172 pFdd~s~D~yTiafGIRN~th--~~k~l~EAYRVLKpGGrf~cLeFskv~~~~---l~~fy~~ysf~VlpvlG~~iagd~ 246 (296)
T KOG1540|consen 172 PFDDDSFDAYTIAFGIRNVTH--IQKALREAYRVLKPGGRFSCLEFSKVENEP---LKWFYDQYSFDVLPVLGEIIAGDR 246 (296)
T ss_pred CCCCCcceeEEEecceecCCC--HHHHHHHHHHhcCCCcEEEEEEccccccHH---HHHHHHhhhhhhhchhhHhhhhhH
Confidence 45554 99999999999999 569999999999999999999986655321 11111 111110
Q ss_pred ----hhhcCCCceecCHHHHHHHHHhcCCCeeE
Q 038113 69 ----MMTQNPGGKERTKHELMTLVTGAGFGGIR 97 (112)
Q Consensus 69 ----~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 97 (112)
.++.. =-+..+.+++..+.++|||+.+.
T Consensus 247 ~sYqYLveS-I~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 247 KSYQYLVES-IRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhhhhHHhh-hhcCCCHHHHHHHHHHcCCcccc
Confidence 01100 01234788999999999999986
No 26
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.63 E-value=2.6e-07 Score=63.28 Aligned_cols=88 Identities=13% Similarity=0.081 Sum_probs=54.1
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhh--hhhchhh--hhcCCCceecCHHH
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKII--SQGDVLM--MTQNPGGKERTKHE 83 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~g~~rt~~e 83 (112)
.|+|+++.++|+++|. .++++++++.|+|||++++........+......... ..+.... ..........+.++
T Consensus 90 fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 167 (255)
T PRK14103 90 TDVVVSNAALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAG 167 (255)
T ss_pred ceEEEEehhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHH
Confidence 3999999999999874 6899999999999999998642211111100000000 0011000 00011223458999
Q ss_pred HHHHHHhcCCCeeE
Q 038113 84 LMTLVTGAGFGGIR 97 (112)
Q Consensus 84 ~~~ll~~aGf~~~~ 97 (112)
+.++|+++||++..
T Consensus 168 ~~~~l~~aGf~v~~ 181 (255)
T PRK14103 168 YAELLTDAGCKVDA 181 (255)
T ss_pred HHHHHHhCCCeEEE
Confidence 99999999998543
No 27
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.62 E-value=1.3e-07 Score=64.70 Aligned_cols=93 Identities=10% Similarity=0.023 Sum_probs=58.9
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCc----hhhhhhhhhchhh-hhcCCCceecCHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETR----TLSKIISQGDVLM-MTQNPGGKERTKHE 83 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~g~~rt~~e 83 (112)
|+|++.+++|++++. ..+|+++.+.|+|||+++++........... ........+.... .... .....+.++
T Consensus 114 D~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~ 190 (255)
T PRK11036 114 DLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLS-PDYPLDPEQ 190 (255)
T ss_pred CEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCC-CCCCCCHHH
Confidence 999999999999875 5899999999999999998865432110000 0000000000000 0000 112357899
Q ss_pred HHHHHHhcCCCeeEEEEeCCc
Q 038113 84 LMTLVTGAGFGGIRFESFICN 104 (112)
Q Consensus 84 ~~~ll~~aGf~~~~~~~~~~~ 104 (112)
+.++|+++||++++...+.+.
T Consensus 191 l~~~l~~aGf~~~~~~gi~~~ 211 (255)
T PRK11036 191 VYQWLEEAGWQIMGKTGVRVF 211 (255)
T ss_pred HHHHHHHCCCeEeeeeeEEEE
Confidence 999999999999877665443
No 28
>PRK08317 hypothetical protein; Provisional
Probab=98.61 E-value=4.1e-07 Score=60.85 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=56.7
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCc-hhhhhhhhhchhhhhcCCCceecCHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETR-TLSKIISQGDVLMMTQNPGGKERTKHELMTL 87 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (112)
|+|++.+++|++++. ..+++++++.|+|||.+++.+...+.....+ ............. .......+..+|.++
T Consensus 89 D~v~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 163 (241)
T PRK08317 89 DAVRSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWS---DHFADPWLGRRLPGL 163 (241)
T ss_pred eEEEEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHH---hcCCCCcHHHHHHHH
Confidence 999999999999884 6799999999999999999886432211000 0000001111100 011223456789999
Q ss_pred HHhcCCCeeEEEE
Q 038113 88 VTGAGFGGIRFES 100 (112)
Q Consensus 88 l~~aGf~~~~~~~ 100 (112)
|+++||+.+++..
T Consensus 164 l~~aGf~~~~~~~ 176 (241)
T PRK08317 164 FREAGLTDIEVEP 176 (241)
T ss_pred HHHcCCCceeEEE
Confidence 9999999876654
No 29
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.56 E-value=2.9e-07 Score=68.08 Aligned_cols=75 Identities=16% Similarity=0.231 Sum_probs=59.5
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLV 88 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 88 (112)
|+|++..++|++++++..++|+++++.|+|||++++.|.......... .. ......|+..+|.+++
T Consensus 105 D~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~------~~--------~~~~~~~~~~~~~~~f 170 (475)
T PLN02336 105 DLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSK------RK--------NNPTHYREPRFYTKVF 170 (475)
T ss_pred EEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccc------cc--------CCCCeecChHHHHHHH
Confidence 999999999999998889999999999999999999998765432110 00 0123446788999999
Q ss_pred HhcCCCeeE
Q 038113 89 TGAGFGGIR 97 (112)
Q Consensus 89 ~~aGf~~~~ 97 (112)
.++||....
T Consensus 171 ~~~~~~~~~ 179 (475)
T PLN02336 171 KECHTRDED 179 (475)
T ss_pred HHheeccCC
Confidence 999998764
No 30
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.56 E-value=9e-07 Score=58.55 Aligned_cols=72 Identities=14% Similarity=0.062 Sum_probs=54.3
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLV 88 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 88 (112)
|+|+...++|++++++...++++++++|+|||++++++.+..++...+ .. .-...+.+|+.+++
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~--------~~--------~~~~~~~~el~~~~ 160 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT--------VG--------FPFAFKEGELRRYY 160 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC--------CC--------CCCccCHHHHHHHh
Confidence 999999999999988899999999999999999888776554321100 00 01124788999999
Q ss_pred HhcCCCeeEE
Q 038113 89 TGAGFGGIRF 98 (112)
Q Consensus 89 ~~aGf~~~~~ 98 (112)
+ ||+.+..
T Consensus 161 ~--~~~~~~~ 168 (197)
T PRK11207 161 E--GWEMVKY 168 (197)
T ss_pred C--CCeEEEe
Confidence 6 8987765
No 31
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.51 E-value=1.3e-06 Score=58.26 Aligned_cols=89 Identities=17% Similarity=0.179 Sum_probs=64.2
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhh-hhhhchhhhhcCCCceecCHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKI-ISQGDVLMMTQNPGGKERTKHELMTL 87 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (112)
|+|+...+|....| .++.|+++++.|+|||+++++|.+..+...- .++ ....+-.-- ....|...|++.|+ .
T Consensus 147 DtVV~TlvLCSve~--~~k~L~e~~rlLRpgG~iifiEHva~~y~~~---n~i~q~v~ep~~~-~~~dGC~ltrd~~e-~ 219 (252)
T KOG4300|consen 147 DTVVCTLVLCSVED--PVKQLNEVRRLLRPGGRIIFIEHVAGEYGFW---NRILQQVAEPLWH-LESDGCVLTRDTGE-L 219 (252)
T ss_pred eeEEEEEEEeccCC--HHHHHHHHHHhcCCCcEEEEEecccccchHH---HHHHHHHhchhhh-eeccceEEehhHHH-H
Confidence 99999999987766 6899999999999999999999998776421 111 111121111 12478888886665 5
Q ss_pred HHhcCCCeeEEEEeCCc
Q 038113 88 VTGAGFGGIRFESFICN 104 (112)
Q Consensus 88 l~~aGf~~~~~~~~~~~ 104 (112)
|++|-|+..+..+...+
T Consensus 220 Leda~f~~~~~kr~~~~ 236 (252)
T KOG4300|consen 220 LEDAEFSIDSCKRFNFG 236 (252)
T ss_pred hhhcccccchhhcccCC
Confidence 66789999988877543
No 32
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.44 E-value=3.2e-06 Score=55.83 Aligned_cols=74 Identities=11% Similarity=0.071 Sum_probs=54.9
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHH
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTL 87 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (112)
.|+|+.+.++|++++++...++++++++|+|||+++|++....+....+ . ......+.+|+.++
T Consensus 95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~--------~--------~~~~~~~~~el~~~ 158 (195)
T TIGR00477 95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCH--------M--------PFSFTFKEDELRQY 158 (195)
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCC--------C--------CcCccCCHHHHHHH
Confidence 3999999999999988888999999999999999888876543321100 0 01123578899999
Q ss_pred HHhcCCCeeEEE
Q 038113 88 VTGAGFGGIRFE 99 (112)
Q Consensus 88 l~~aGf~~~~~~ 99 (112)
++ +|+.....
T Consensus 159 f~--~~~~~~~~ 168 (195)
T TIGR00477 159 YA--DWELLKYN 168 (195)
T ss_pred hC--CCeEEEee
Confidence 95 68877655
No 33
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.39 E-value=2.3e-07 Score=53.50 Aligned_cols=39 Identities=18% Similarity=0.416 Sum_probs=33.2
Q ss_pred CCCcc--cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEE
Q 038113 4 NVAKG--DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVII 44 (112)
Q Consensus 4 ~~P~~--D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i 44 (112)
|+|+. |+|+..+++|++ ++..++++++++.|+|||+++|
T Consensus 55 ~~~~~sfD~v~~~~~~~~~--~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 55 PFPDNSFDVVFSNSVLHHL--EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SS-TT-EEEEEEESHGGGS--SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccccccccceeec--cCHHHHHHHHHHHcCcCeEEeC
Confidence 44544 999999999999 4468999999999999999986
No 34
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.38 E-value=1.3e-06 Score=59.32 Aligned_cols=88 Identities=20% Similarity=0.182 Sum_probs=63.7
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCce---ecCHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGK---ERTKHELM 85 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~rt~~e~~ 85 (112)
|.+.+-.+|-.++.+.-...+.++++.|+|||.|++-|.-..+-..-.. . -...++-+..+ .+.|. -.+.++++
T Consensus 146 D~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF-~-~~~~i~~nfYV-RgDGT~~YfF~~eeL~ 222 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRF-K-KGQCISENFYV-RGDGTRAYFFTEEELD 222 (264)
T ss_pred ceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhc-c-CCceeecceEE-ccCCceeeeccHHHHH
Confidence 9999999999999999999999999999999999999986654311100 0 01122222222 12332 23899999
Q ss_pred HHHHhcCCCeeEEE
Q 038113 86 TLVTGAGFGGIRFE 99 (112)
Q Consensus 86 ~ll~~aGf~~~~~~ 99 (112)
+|+++|||..++..
T Consensus 223 ~~f~~agf~~~~~~ 236 (264)
T KOG2361|consen 223 ELFTKAGFEEVQLE 236 (264)
T ss_pred HHHHhcccchhccc
Confidence 99999999988653
No 35
>PRK04266 fibrillarin; Provisional
Probab=98.33 E-value=5e-06 Score=56.28 Aligned_cols=77 Identities=12% Similarity=0.072 Sum_probs=49.9
Q ss_pred cEEEeccccccCChH-HHHHHHHHHHhhCCCCCEEEEE-eeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHH
Q 038113 9 DAIYMKWILHDWSDE-HCLKLFKKCYKSIPKDGMVIIV-ETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMT 86 (112)
Q Consensus 9 D~v~~~~vlh~~~d~-~~~~iL~~~~~aL~pgg~l~i~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 86 (112)
|+++ |+.++. +...+|+++++.|+|||+++|. .. .+-+... ... +..++..+
T Consensus 143 D~i~-----~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~-~~~d~~~-------------------~~~-~~~~~~~~ 196 (226)
T PRK04266 143 DVIY-----QDVAQPNQAEIAIDNAEFFLKDGGYLLLAIKA-RSIDVTK-------------------DPK-EIFKEEIR 196 (226)
T ss_pred CEEE-----ECCCChhHHHHHHHHHHHhcCCCcEEEEEEec-ccccCcC-------------------CHH-HHHHHHHH
Confidence 7775 555543 3456799999999999999994 32 1101000 000 22345569
Q ss_pred HHHhcCCCeeEEEEeCCc---eEEEEEE
Q 038113 87 LVTGAGFGGIRFESFICN---LWVMEFY 111 (112)
Q Consensus 87 ll~~aGf~~~~~~~~~~~---~~vie~~ 111 (112)
+++++||+.++.....++ +..+.++
T Consensus 197 ~l~~aGF~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 197 KLEEGGFEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred HHHHcCCeEEEEEcCCCCcCCeEEEEEE
Confidence 999999999999887544 6655554
No 36
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.33 E-value=3.2e-06 Score=56.98 Aligned_cols=88 Identities=16% Similarity=0.105 Sum_probs=55.8
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhh--hhhhchhhhhcCCCceecCHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKI--ISQGDVLMMTQNPGGKERTKHELMT 86 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~rt~~e~~~ 86 (112)
|+|++++++++.++. ..+|+++.+.|+|||++++..... .......... ..................+.++|.+
T Consensus 116 D~Ii~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (233)
T PRK05134 116 DVVTCMEMLEHVPDP--ASFVRACAKLVKPGGLVFFSTLNR--NLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAA 191 (233)
T ss_pred cEEEEhhHhhccCCH--HHHHHHHHHHcCCCcEEEEEecCC--ChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHH
Confidence 999999999999874 579999999999999998875421 1100000000 0001000000000123458899999
Q ss_pred HHHhcCCCeeEEEE
Q 038113 87 LVTGAGFGGIRFES 100 (112)
Q Consensus 87 ll~~aGf~~~~~~~ 100 (112)
+++++||+.++...
T Consensus 192 ~l~~~Gf~~v~~~~ 205 (233)
T PRK05134 192 WLRQAGLEVQDITG 205 (233)
T ss_pred HHHHCCCeEeeeee
Confidence 99999999987754
No 37
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.29 E-value=7.4e-07 Score=61.43 Aligned_cols=80 Identities=14% Similarity=0.216 Sum_probs=50.2
Q ss_pred EEEeccccccCCh-HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHH
Q 038113 10 AIYMKWILHDWSD-EHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLV 88 (112)
Q Consensus 10 ~v~~~~vlh~~~d-~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 88 (112)
++++..+||+++| ++...+++.++++|.||+.|+|.....+..+.. .......+.. ....+..||.+|+.++|
T Consensus 153 avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~--~~~~~~~~~~----~~~~~~~Rs~~ei~~~f 226 (267)
T PF04672_consen 153 AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPER--AEALEAVYAQ----AGSPGRPRSREEIAAFF 226 (267)
T ss_dssp EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHH--HHHHHHHHHH----CCS----B-HHHHHHCC
T ss_pred eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHH--HHHHHHHHHc----CCCCceecCHHHHHHHc
Confidence 7889999999998 669999999999999999999999876543211 1111111211 12367889999999999
Q ss_pred HhcCCCeeE
Q 038113 89 TGAGFGGIR 97 (112)
Q Consensus 89 ~~aGf~~~~ 97 (112)
. ||+.++
T Consensus 227 ~--g~elve 233 (267)
T PF04672_consen 227 D--GLELVE 233 (267)
T ss_dssp T--TSEE-T
T ss_pred C--CCccCC
Confidence 5 988764
No 38
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.29 E-value=3.6e-06 Score=56.27 Aligned_cols=89 Identities=12% Similarity=0.125 Sum_probs=56.2
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhc--CCCceecCHHHHH
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQ--NPGGKERTKHELM 85 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~rt~~e~~ 85 (112)
.|++++.+++|+..+. ..+|+++++.|+|||.+++.....+. ...........+....... .......+..+|.
T Consensus 113 ~D~i~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 188 (224)
T TIGR01983 113 FDVVTCMEVLEHVPDP--QAFIRACAQLLKPGGILFFSTINRTP--KSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELT 188 (224)
T ss_pred ccEEEehhHHHhCCCH--HHHHHHHHHhcCCCcEEEEEecCCCc--hHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHH
Confidence 3999999999999875 57999999999999999887643211 0100000000000000000 0011234788999
Q ss_pred HHHHhcCCCeeEEEE
Q 038113 86 TLVTGAGFGGIRFES 100 (112)
Q Consensus 86 ~ll~~aGf~~~~~~~ 100 (112)
++++++||+.+++..
T Consensus 189 ~~l~~~G~~i~~~~~ 203 (224)
T TIGR01983 189 SWLESAGLRVKDVKG 203 (224)
T ss_pred HHHHHcCCeeeeeee
Confidence 999999999988764
No 39
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.25 E-value=6.8e-06 Score=57.65 Aligned_cols=89 Identities=15% Similarity=0.172 Sum_probs=64.2
Q ss_pred CCCCc--c-cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCc--hhhhhhhhhchhhhhcCCCce
Q 038113 3 QNVAK--G-DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETR--TLSKIISQGDVLMMTQNPGGK 77 (112)
Q Consensus 3 ~~~P~--~-D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~ 77 (112)
+.+|. . |+|++-.||.|..++ ...|+.++++|+|||.|++=..+++.+...- +..++ ..|- ..-.
T Consensus 175 E~Lp~~~~FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rY-----a~m~---nv~F 244 (315)
T PF08003_consen 175 EDLPNLGAFDTVFSMGVLYHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRY-----AKMR---NVWF 244 (315)
T ss_pred hhccccCCcCEEEEeeehhccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcc-----cCCC---ceEE
Confidence 44553 3 999999999999884 7999999999999999988666666543211 11111 1111 0124
Q ss_pred ecCHHHHHHHHHhcCCCeeEEEEe
Q 038113 78 ERTKHELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 78 ~rt~~e~~~ll~~aGf~~~~~~~~ 101 (112)
..|...+..||+++||+.++++.+
T Consensus 245 iPs~~~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 245 IPSVAALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred eCCHHHHHHHHHHcCCceEEEecC
Confidence 558999999999999999998865
No 40
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.24 E-value=2.2e-06 Score=59.56 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=61.5
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLV 88 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 88 (112)
|.|+.-.++.+++.+.-..+++++.+.|+|||++++......+............++.-. ..++|...+.+++...+
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~ky---iFPgg~lps~~~~~~~~ 205 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKY---IFPGGYLPSLSEILRAA 205 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHH---TSTTS---BHHHHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEe---eCCCCCCCCHHHHHHHH
Confidence 999999999999988788999999999999999999887765432110000000111111 13688888999999999
Q ss_pred HhcCCCeeEEEEe
Q 038113 89 TGAGFGGIRFESF 101 (112)
Q Consensus 89 ~~aGf~~~~~~~~ 101 (112)
+++||++..+...
T Consensus 206 ~~~~l~v~~~~~~ 218 (273)
T PF02353_consen 206 EDAGLEVEDVENL 218 (273)
T ss_dssp HHTT-EEEEEEE-
T ss_pred hcCCEEEEEEEEc
Confidence 9999999887755
No 41
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.21 E-value=2.5e-06 Score=58.96 Aligned_cols=39 Identities=15% Similarity=0.331 Sum_probs=36.6
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
|+|+++++||++++++..+++++++++|+|||.+++-..
T Consensus 205 D~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 205 DLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred CEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 999999999999998889999999999999999998653
No 42
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.20 E-value=9.8e-06 Score=56.94 Aligned_cols=36 Identities=8% Similarity=0.255 Sum_probs=32.7
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEE
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVII 44 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i 44 (112)
.++++.+.+|+++++++..+|++++++|+|||+++|
T Consensus 140 ~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 140 LGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred EEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 467777899999999999999999999999999986
No 43
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.16 E-value=2.2e-05 Score=54.80 Aligned_cols=73 Identities=15% Similarity=0.089 Sum_probs=55.0
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLV 88 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 88 (112)
|+|+...++|++++++...+++++.+.|+|||.++++.....+....+ . +.....+.+|+++++
T Consensus 186 D~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~--------~--------p~~~~~~~~el~~~~ 249 (287)
T PRK12335 186 DFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP--------M--------PFSFTFKEGELKDYY 249 (287)
T ss_pred cEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC--------C--------CCCcccCHHHHHHHh
Confidence 999999999999988889999999999999999888776543321111 0 011225788999999
Q ss_pred HhcCCCeeEEE
Q 038113 89 TGAGFGGIRFE 99 (112)
Q Consensus 89 ~~aGf~~~~~~ 99 (112)
+ +|++++..
T Consensus 250 ~--~~~i~~~~ 258 (287)
T PRK12335 250 Q--DWEIVKYN 258 (287)
T ss_pred C--CCEEEEEe
Confidence 5 68887764
No 44
>PRK05785 hypothetical protein; Provisional
Probab=98.10 E-value=3.6e-05 Score=52.03 Aligned_cols=104 Identities=10% Similarity=-0.047 Sum_probs=61.6
Q ss_pred CCCcc--cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhh--hhchhhhhcCCCc---
Q 038113 4 NVAKG--DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIIS--QGDVLMMTQNPGG--- 76 (112)
Q Consensus 4 ~~P~~--D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g--- 76 (112)
|+|++ |+|++...+|+++|. .+.|+++++.|+| .+.|+|...++.......-.+.. ..-........+.
T Consensus 105 p~~d~sfD~v~~~~~l~~~~d~--~~~l~e~~RvLkp--~~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y 180 (226)
T PRK05785 105 PFRDKSFDVVMSSFALHASDNI--EKVIAEFTRVSRK--QVGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDY 180 (226)
T ss_pred CCCCCCEEEEEecChhhccCCH--HHHHHHHHHHhcC--ceEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Confidence 34444 999999999999884 6799999999999 45566765544321110000000 0000000011111
Q ss_pred --------eecCHHHHHHHHHhcCCCeeEEEEeC-CceEEEEEEC
Q 038113 77 --------KERTKHELMTLVTGAGFGGIRFESFI-CNLWVMEFYK 112 (112)
Q Consensus 77 --------~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~ 112 (112)
...+.+++.++++++| ..++..... |..++..++|
T Consensus 181 ~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 181 KYIYYIYERLPTNSFHREIFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEccccEEEEEEEee
Confidence 1237789999999984 767777765 4456666654
No 45
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.05 E-value=4.2e-06 Score=49.13 Aligned_cols=32 Identities=19% Similarity=0.438 Sum_probs=24.1
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEE
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMV 42 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l 42 (112)
|+|++.+++|++++ ...+|+++++.|+|||++
T Consensus 68 D~V~~~~vl~~l~~--~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 68 DLVVASNVLHHLED--IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp SEEEEE-TTS--S---HHHHHHHHTTT-TSS-EE
T ss_pred ceehhhhhHhhhhh--HHHHHHHHHHHcCCCCCC
Confidence 99999999999944 679999999999999986
No 46
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.00 E-value=4.3e-05 Score=55.48 Aligned_cols=85 Identities=12% Similarity=0.070 Sum_probs=61.7
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLV 88 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 88 (112)
|+|+...++++.+++....+++++++.|+|||++++.+...+...... ....+.. . .++|...+.+++.+.+
T Consensus 230 D~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-----~~~i~~y--i-fp~g~lps~~~i~~~~ 301 (383)
T PRK11705 230 DRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-----DPWINKY--I-FPNGCLPSVRQIAQAS 301 (383)
T ss_pred CEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-----CCCceee--e-cCCCcCCCHHHHHHHH
Confidence 999999999999887778999999999999999999876554332111 0111111 1 2467778888988887
Q ss_pred HhcCCCeeEEEEeC
Q 038113 89 TGAGFGGIRFESFI 102 (112)
Q Consensus 89 ~~aGf~~~~~~~~~ 102 (112)
+ .||.+.++...+
T Consensus 302 ~-~~~~v~d~~~~~ 314 (383)
T PRK11705 302 E-GLFVMEDWHNFG 314 (383)
T ss_pred H-CCcEEEEEecCh
Confidence 6 589888776543
No 47
>PRK06202 hypothetical protein; Provisional
Probab=97.97 E-value=3.6e-05 Score=51.95 Aligned_cols=85 Identities=20% Similarity=0.253 Sum_probs=55.2
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhh---hcCCC-----ceecC
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMM---TQNPG-----GKERT 80 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----g~~rt 80 (112)
|+|+++.++|+++|++..++|+++++.++ |.+++.|...+.. . +..+ ........ ....+ -+.+|
T Consensus 131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~--~--~~~~-~~~~~~~~~~~~~~~d~~~s~~~~~~ 203 (232)
T PRK06202 131 DVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL--A--YALF-WAGTRLLSRSSFVHTDGLLSVRRSYT 203 (232)
T ss_pred cEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH--H--HHHH-HHHHHHhccCceeeccchHHHHhhcC
Confidence 99999999999999888899999999987 5666666544321 1 0000 00000000 00001 13458
Q ss_pred HHHHHHHHHhcCCCeeEEEEe
Q 038113 81 KHELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~ 101 (112)
.+|+.+++++ ||++....+.
T Consensus 204 ~~el~~ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 204 PAELAALAPQ-GWRVERQWPF 223 (232)
T ss_pred HHHHHHHhhC-CCeEEeccce
Confidence 9999999999 9998776654
No 48
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.95 E-value=1.2e-05 Score=56.27 Aligned_cols=38 Identities=13% Similarity=0.329 Sum_probs=35.9
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e 46 (112)
|+|+++|+|.+++++...+++++++++|+|||.|++-.
T Consensus 225 D~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 225 DAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred ceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 99999999999999999999999999999999987754
No 49
>PRK06922 hypothetical protein; Provisional
Probab=97.93 E-value=1.8e-05 Score=60.69 Aligned_cols=45 Identities=27% Similarity=0.368 Sum_probs=38.9
Q ss_pred ccEEEeccccccC-----------ChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 038113 8 GDAIYMKWILHDW-----------SDEHCLKLFKKCYKSIPKDGMVIIVETILPKL 52 (112)
Q Consensus 8 ~D~v~~~~vlh~~-----------~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~ 52 (112)
.|+|+++.++|+| ++++..++|++++++|+|||+++|.|.+.++.
T Consensus 488 FDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~E~ 543 (677)
T PRK06922 488 VDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMTED 543 (677)
T ss_pred EEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccCCc
Confidence 3999999999986 35678999999999999999999999766543
No 50
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.93 E-value=0.00019 Score=46.63 Aligned_cols=76 Identities=12% Similarity=0.028 Sum_probs=56.2
Q ss_pred ccEEEeccccccCChHH-------------------HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchh
Q 038113 8 GDAIYMKWILHDWSDEH-------------------CLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVL 68 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~-------------------~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~ 68 (112)
.|++++...+|..+++. ..++|+++.+.|+|||++++++....
T Consensus 83 fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~------------------ 144 (179)
T TIGR00537 83 FDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN------------------ 144 (179)
T ss_pred ccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC------------------
Confidence 49999988887665421 35789999999999999999763221
Q ss_pred hhhcCCCceecCHHHHHHHHHhcCCCeeEEEEeCCceEEEEEEC
Q 038113 69 MMTQNPGGKERTKHELMTLVTGAGFGGIRFESFICNLWVMEFYK 112 (112)
Q Consensus 69 ~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 112 (112)
...++.++|+++||+...+...+-.+--++++|
T Consensus 145 -----------~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 145 -----------GEPDTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred -----------ChHHHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 245778999999999988877765555555543
No 51
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.91 E-value=6e-05 Score=50.44 Aligned_cols=76 Identities=17% Similarity=0.137 Sum_probs=53.5
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLV 88 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 88 (112)
|+|+..+++|+.++ ..++|+++++.|+|||.+++.+...+.. ... ...... ......+.++|.+++
T Consensus 100 D~vi~~~~l~~~~~--~~~~l~~~~~~L~~~G~l~~~~~~~~~~---~~~---~~~~~~------~~~~~~~~~~~~~~l 165 (240)
T TIGR02072 100 DLIVSNLALQWCDD--LSQALSELARVLKPGGLLAFSTFGPGTL---HEL---RQSFGQ------HGLRYLSLDELKALL 165 (240)
T ss_pred eEEEEhhhhhhccC--HHHHHHHHHHHcCCCcEEEEEeCCccCH---HHH---HHHHHH------hccCCCCHHHHHHHH
Confidence 99999999998877 4689999999999999999986433221 000 011110 123446888999999
Q ss_pred HhcCCCeeEEE
Q 038113 89 TGAGFGGIRFE 99 (112)
Q Consensus 89 ~~aGf~~~~~~ 99 (112)
.++ |+...+.
T Consensus 166 ~~~-f~~~~~~ 175 (240)
T TIGR02072 166 KNS-FELLTLE 175 (240)
T ss_pred HHh-cCCcEEE
Confidence 988 8876554
No 52
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.87 E-value=1.1e-05 Score=53.62 Aligned_cols=38 Identities=16% Similarity=0.348 Sum_probs=33.8
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e 46 (112)
|+|+++|||-.++++...+++++++++|+|||.|++-.
T Consensus 138 D~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 138 DLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp EEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred cEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 99999999999999999999999999999999999864
No 53
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.86 E-value=1.7e-05 Score=52.48 Aligned_cols=76 Identities=11% Similarity=0.142 Sum_probs=52.6
Q ss_pred CCcc--cEEEeccccccCCh-HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCH
Q 038113 5 VAKG--DAIYMKWILHDWSD-EHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTK 81 (112)
Q Consensus 5 ~P~~--D~v~~~~vlh~~~d-~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~ 81 (112)
.|++ |+++++-++|.+++ ++...+++++.++|+|||.+++...... . ... .|..-..
T Consensus 102 ~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~------~----c~~----------wgh~~ga 161 (201)
T PF05401_consen 102 WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA------N----CRR----------WGHAAGA 161 (201)
T ss_dssp --SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH------H----HHH----------TT-S--H
T ss_pred CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC------c----ccc----------cCcccch
Confidence 4544 99999999999986 6789999999999999999999876211 0 111 2333457
Q ss_pred HHHHHHHHhcCCCeeEEEEe
Q 038113 82 HELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~~~ 101 (112)
+...++|.+. |..++....
T Consensus 162 ~tv~~~~~~~-~~~~~~~~~ 180 (201)
T PF05401_consen 162 ETVLEMLQEH-LTEVERVEC 180 (201)
T ss_dssp HHHHHHHHHH-SEEEEEEEE
T ss_pred HHHHHHHHHH-hhheeEEEE
Confidence 7888888876 666666655
No 54
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.86 E-value=0.00012 Score=49.10 Aligned_cols=87 Identities=13% Similarity=0.169 Sum_probs=53.5
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhh-hhcCCCceecCHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLM-MTQNPGGKERTKHELMTL 87 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~rt~~e~~~l 87 (112)
|+++..+++|++++++...+++++.+.++++ .++.. .+..+... .......... ..........+.++|.++
T Consensus 129 D~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~-~~i~~---~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 201 (230)
T PRK07580 129 DTVVCLDVLIHYPQEDAARMLAHLASLTRGS-LIFTF---APYTPLLA---LLHWIGGLFPGPSRTTRIYPHREKGIRRA 201 (230)
T ss_pred CEEEEcchhhcCCHHHHHHHHHHHHhhcCCe-EEEEE---CCccHHHH---HHHHhccccCCccCCCCccccCHHHHHHH
Confidence 9999999999999998999999999876433 33322 12111000 0000000000 000112334588999999
Q ss_pred HHhcCCCeeEEEEeC
Q 038113 88 VTGAGFGGIRFESFI 102 (112)
Q Consensus 88 l~~aGf~~~~~~~~~ 102 (112)
++++||++.++.+..
T Consensus 202 l~~~Gf~~~~~~~~~ 216 (230)
T PRK07580 202 LAAAGFKVVRTERIS 216 (230)
T ss_pred HHHCCCceEeeeecc
Confidence 999999999887764
No 55
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.85 E-value=8.8e-05 Score=52.59 Aligned_cols=87 Identities=14% Similarity=0.051 Sum_probs=50.1
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLV 88 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 88 (112)
|+|++..++||+++++...+++++.+ +.+ |+++|.. .+..............+. .... .......+.++++++|
T Consensus 214 D~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~-g~liIs~--~p~~~~~~~l~~~g~~~~-g~~~-~~r~y~~s~eel~~lL 287 (315)
T PLN02585 214 DTVTCLDVLIHYPQDKADGMIAHLAS-LAE-KRLIISF--APKTLYYDILKRIGELFP-GPSK-ATRAYLHAEADVERAL 287 (315)
T ss_pred CEEEEcCEEEecCHHHHHHHHHHHHh-hcC-CEEEEEe--CCcchHHHHHHHHHhhcC-CCCc-CceeeeCCHHHHHHHH
Confidence 99999999999999887888988885 444 4554422 222110000000000000 0000 0011234899999999
Q ss_pred HhcCCCeeEEEEe
Q 038113 89 TGAGFGGIRFESF 101 (112)
Q Consensus 89 ~~aGf~~~~~~~~ 101 (112)
+++||++.+..-.
T Consensus 288 ~~AGf~v~~~~~~ 300 (315)
T PLN02585 288 KKAGWKVARREMT 300 (315)
T ss_pred HHCCCEEEEEEEe
Confidence 9999998765443
No 56
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.85 E-value=0.00011 Score=49.14 Aligned_cols=87 Identities=11% Similarity=0.039 Sum_probs=54.9
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhh--cCCCceecCHHHHH
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMT--QNPGGKERTKHELM 85 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~rt~~e~~ 85 (112)
.|++++..+++++++++..++++++.+.+++++.+.+ .+... ... ....+...... ....-..++.+++.
T Consensus 120 fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~----~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
T TIGR02021 120 FDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF----APKTA---WLA-FLKMIGELFPGSSRATSAYLHPMTDLE 191 (219)
T ss_pred cCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE----CCCch---HHH-HHHHHHhhCcCcccccceEEecHHHHH
Confidence 3999999999999988888999999998876533332 12111 110 00011111000 00122345899999
Q ss_pred HHHHhcCCCeeEEEEeC
Q 038113 86 TLVTGAGFGGIRFESFI 102 (112)
Q Consensus 86 ~ll~~aGf~~~~~~~~~ 102 (112)
++++++||+++......
T Consensus 192 ~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 192 RALGELGWKIVREGLVS 208 (219)
T ss_pred HHHHHcCceeeeeeccc
Confidence 99999999999887654
No 57
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.80 E-value=0.00022 Score=47.91 Aligned_cols=79 Identities=18% Similarity=0.343 Sum_probs=62.3
Q ss_pred CCC-CCCc----c-cEEEeccccccCCh-HHHHHHHHHHHhhCCCCCE-----EEEEeeecCCCCCCchhhhhhhhhchh
Q 038113 1 MFQ-NVAK----G-DAIYMKWILHDWSD-EHCLKLFKKCYKSIPKDGM-----VIIVETILPKLPETRTLSKIISQGDVL 68 (112)
Q Consensus 1 ~f~-~~P~----~-D~v~~~~vlh~~~d-~~~~~iL~~~~~aL~pgg~-----l~i~e~~~~~~~~~~~~~~~~~~~~~~ 68 (112)
||+ |+|. . |+|.++-||-..|+ .+.-++|+++.+-|+|+|. |+|+ .|...
T Consensus 92 Fm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlV---lP~~C--------------- 153 (219)
T PF11968_consen 92 FMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLV---LPLPC--------------- 153 (219)
T ss_pred cccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEE---eCchH---------------
Confidence 453 6772 2 99999999999996 4588999999999999999 7764 23211
Q ss_pred hhhcCCCceecCHHHHHHHHHhcCCCeeEEEEe
Q 038113 69 MMTQNPGGKERTKHELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 69 ~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (112)
..|++--+.+.|.++++..||..++....
T Consensus 154 ----v~NSRy~~~~~l~~im~~LGf~~~~~~~~ 182 (219)
T PF11968_consen 154 ----VTNSRYMTEERLREIMESLGFTRVKYKKS 182 (219)
T ss_pred ----hhcccccCHHHHHHHHHhCCcEEEEEEec
Confidence 12667778999999999999999987654
No 58
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.77 E-value=0.00014 Score=48.69 Aligned_cols=79 Identities=13% Similarity=0.155 Sum_probs=55.3
Q ss_pred CCCcc--cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCH
Q 038113 4 NVAKG--DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTK 81 (112)
Q Consensus 4 ~~P~~--D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~ 81 (112)
|++++ |+++++-.|..-+ -...|+++.+.|+|||.|.|.|...- + -+.
T Consensus 117 PL~~~svDv~VfcLSLMGTn---~~~fi~EA~RvLK~~G~L~IAEV~SR----------f-----------------~~~ 166 (219)
T PF05148_consen 117 PLEDESVDVAVFCLSLMGTN---WPDFIREANRVLKPGGILKIAEVKSR----------F-----------------ENV 166 (219)
T ss_dssp S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGGG----------------------------S-H
T ss_pred cCCCCceeEEEEEhhhhCCC---cHHHHHHHHheeccCcEEEEEEeccc----------C-----------------cCH
Confidence 44444 9999999987644 35799999999999999999994221 1 145
Q ss_pred HHHHHHHHhcCCCeeEEEEeCCceEEEEEEC
Q 038113 82 HELMTLVTGAGFGGIRFESFICNLWVMEFYK 112 (112)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 112 (112)
+++.+.++..||+..........+.+++++|
T Consensus 167 ~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 167 KQFIKALKKLGFKLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp HHHHHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred HHHHHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence 6888999999999988665667788888775
No 59
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.75 E-value=1.2e-05 Score=50.84 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=51.2
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHH
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTL 87 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (112)
.|+|+...++|++++. ..+|+++.+.|++||.+++.+......-.. ....... +..........+. +.++|..+
T Consensus 74 ~D~I~~~~~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~ 147 (152)
T PF13847_consen 74 FDIIISNGVLHHFPDP--EKVLKNIIRLLKPGGILIISDPNHNDELPE-QLEELMN-LYSEVWSMIYIGN--DKEEWKYI 147 (152)
T ss_dssp EEEEEEESTGGGTSHH--HHHHHHHHHHEEEEEEEEEEEEEHSHHHHH-HHHHHHH-HHHHHHHHCC-----CCCGHHHH
T ss_pred eeEEEEcCchhhccCH--HHHHHHHHHHcCCCcEEEEEECChHHHHHH-HHHHHHH-HHHHHhhhhhccc--CHHHHHHH
Confidence 4999999999999985 589999999999999999999883221100 0100000 0011110011122 78899999
Q ss_pred HHhcC
Q 038113 88 VTGAG 92 (112)
Q Consensus 88 l~~aG 92 (112)
|++||
T Consensus 148 ~~~ag 152 (152)
T PF13847_consen 148 LEEAG 152 (152)
T ss_dssp HHHTT
T ss_pred HHhcC
Confidence 99998
No 60
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.75 E-value=0.00012 Score=51.08 Aligned_cols=88 Identities=24% Similarity=0.272 Sum_probs=69.3
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHH
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTL 87 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (112)
-|-|+.--+++++..+.-...++++++.|+|||++++.....++.+... ...+..-- .+++|...|..+..+.
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~----~~~~i~~y---iFPgG~lPs~~~i~~~ 210 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRR----FPDFIDKY---IFPGGELPSISEILEL 210 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCccccc----chHHHHHh---CCCCCcCCCHHHHHHH
Confidence 3999999999999998889999999999999999999988777654311 11111111 2469999999999999
Q ss_pred HHhcCCCeeEEEEeC
Q 038113 88 VTGAGFGGIRFESFI 102 (112)
Q Consensus 88 l~~aGf~~~~~~~~~ 102 (112)
.+++||.+..+...+
T Consensus 211 ~~~~~~~v~~~~~~~ 225 (283)
T COG2230 211 ASEAGFVVLDVESLR 225 (283)
T ss_pred HHhcCcEEehHhhhc
Confidence 999999998776553
No 61
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.74 E-value=0.0002 Score=48.79 Aligned_cols=78 Identities=12% Similarity=0.168 Sum_probs=51.8
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLV 88 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 88 (112)
|+|+....+|..+| ..++|+++++.|+|||.+++.....+.-+ .........+.. .......+.+++.+++
T Consensus 105 D~V~s~~~l~~~~d--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~---el~~~~~~~~~~----~~~~~~~~~~~l~~~l 175 (251)
T PRK10258 105 DLAWSNLAVQWCGN--LSTALRELYRVVRPGGVVAFTTLVQGSLP---ELHQAWQAVDER----PHANRFLPPDAIEQAL 175 (251)
T ss_pred EEEEECchhhhcCC--HHHHHHHHHHHcCCCeEEEEEeCCCCchH---HHHHHHHHhccC----CccccCCCHHHHHHHH
Confidence 99999999987666 46899999999999999999775433211 111000001100 0122345889999999
Q ss_pred HhcCCCe
Q 038113 89 TGAGFGG 95 (112)
Q Consensus 89 ~~aGf~~ 95 (112)
...|++.
T Consensus 176 ~~~~~~~ 182 (251)
T PRK10258 176 NGWRYQH 182 (251)
T ss_pred HhCCcee
Confidence 9888764
No 62
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.72 E-value=0.00031 Score=48.04 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=50.8
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhh---h--hhhchhhhhcC-CCceecCH
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKI---I--SQGDVLMMTQN-PGGKERTK 81 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~---~--~~~~~~~~~~~-~~g~~rt~ 81 (112)
.|+++.+.++|..+|. .++|++++++|+|||++++.- +.....+..... . ..+...+.... ..+...+.
T Consensus 94 fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~~---~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 168 (258)
T PRK01683 94 LDLIFANASLQWLPDH--LELFPRLVSLLAPGGVLAVQM---PDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPP 168 (258)
T ss_pred ccEEEEccChhhCCCH--HHHHHHHHHhcCCCcEEEEEC---CCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCH
Confidence 3999999999988874 589999999999999998852 222111110000 0 00111110000 01233477
Q ss_pred HHHHHHHHhcCCCe
Q 038113 82 HELMTLVTGAGFGG 95 (112)
Q Consensus 82 ~e~~~ll~~aGf~~ 95 (112)
.++.+++.++|+.+
T Consensus 169 ~~~~~~l~~~g~~v 182 (258)
T PRK01683 169 HAYYDALAPAACRV 182 (258)
T ss_pred HHHHHHHHhCCCce
Confidence 89999999999874
No 63
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.71 E-value=5.9e-05 Score=44.89 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=33.6
Q ss_pred ccEEEecc-ccccCCh-HHHHHHHHHHHhhCCCCCEEEEEe
Q 038113 8 GDAIYMKW-ILHDWSD-EHCLKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 8 ~D~v~~~~-vlh~~~d-~~~~~iL~~~~~aL~pgg~l~i~e 46 (112)
.|+|++.. .+|++.+ ++..++|+++++.|+|||+++|.+
T Consensus 71 ~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 71 FDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 49999999 6776554 578999999999999999999875
No 64
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.71 E-value=5.1e-05 Score=51.61 Aligned_cols=86 Identities=17% Similarity=0.203 Sum_probs=58.3
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCC-----ceecCHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPG-----GKERTKHE 83 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~rt~~e 83 (112)
|+|+.-.||+|.+|++ .++++|.+.++|||.+++...... ..+-...-.....=+.+ .+. .+....+|
T Consensus 126 DvV~cmEVlEHv~dp~--~~~~~c~~lvkP~G~lf~STinrt--~ka~~~~i~~ae~vl~~---vP~gTH~~~k~irp~E 198 (243)
T COG2227 126 DVVTCMEVLEHVPDPE--SFLRACAKLVKPGGILFLSTINRT--LKAYLLAIIGAEYVLRI---VPKGTHDYRKFIKPAE 198 (243)
T ss_pred cEEEEhhHHHccCCHH--HHHHHHHHHcCCCcEEEEeccccC--HHHHHHHHHHHHHHHHh---cCCcchhHHHhcCHHH
Confidence 9999999999999965 699999999999999999876532 11100000000011111 122 34557889
Q ss_pred HHHHHHhcCCCeeEEEEe
Q 038113 84 LMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 84 ~~~ll~~aGf~~~~~~~~ 101 (112)
+..++.++|+.......+
T Consensus 199 l~~~~~~~~~~~~~~~g~ 216 (243)
T COG2227 199 LIRWLLGANLKIIDRKGL 216 (243)
T ss_pred HHHhcccCCceEEeecce
Confidence 999999999988876544
No 65
>PTZ00146 fibrillarin; Provisional
Probab=97.68 E-value=0.0013 Score=46.29 Aligned_cols=79 Identities=11% Similarity=-0.013 Sum_probs=48.2
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHH
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTL 87 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (112)
.|+|++... .+ ++...++.++++.|+|||+++|. .-.......++ -..+=.+|. ++
T Consensus 203 vDvV~~Dva---~p-dq~~il~~na~r~LKpGG~~vI~-ika~~id~g~~------------------pe~~f~~ev-~~ 258 (293)
T PTZ00146 203 VDVIFADVA---QP-DQARIVALNAQYFLKNGGHFIIS-IKANCIDSTAK------------------PEVVFASEV-QK 258 (293)
T ss_pred CCEEEEeCC---Cc-chHHHHHHHHHHhccCCCEEEEE-EeccccccCCC------------------HHHHHHHHH-HH
Confidence 499977663 12 34567778999999999999993 21111111110 001101344 88
Q ss_pred HHhcCCCeeEEEEeCC---ceEEEEE
Q 038113 88 VTGAGFGGIRFESFIC---NLWVMEF 110 (112)
Q Consensus 88 l~~aGf~~~~~~~~~~---~~~vie~ 110 (112)
|+++||+.++.+.+.+ .+++|.+
T Consensus 259 L~~~GF~~~e~v~L~Py~~~h~~v~~ 284 (293)
T PTZ00146 259 LKKEGLKPKEQLTLEPFERDHAVVIG 284 (293)
T ss_pred HHHcCCceEEEEecCCccCCcEEEEE
Confidence 9999999999888754 3455543
No 66
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.64 E-value=0.00013 Score=50.67 Aligned_cols=42 Identities=14% Similarity=0.326 Sum_probs=38.1
Q ss_pred CCcc-cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 038113 5 VAKG-DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 5 ~P~~-D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e 46 (112)
.++. |+|+++|||-.++.+...+++++.+++|+|||.|++-.
T Consensus 199 ~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 199 FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 4444 99999999999999999999999999999999999854
No 67
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.63 E-value=0.00091 Score=46.90 Aligned_cols=98 Identities=12% Similarity=0.045 Sum_probs=64.0
Q ss_pred cEEEeccccccCChHH-HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhh-hhcCCCceecCHHHHHH
Q 038113 9 DAIYMKWILHDWSDEH-CLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLM-MTQNPGGKERTKHELMT 86 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~-~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~rt~~e~~~ 86 (112)
++++++.+.--++|.+ ....|+.+++++.|||.|+-.-.-+.+.- ...++ .+.+..- ..| --+.||..|..+
T Consensus 211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQl--e~IAr--~LtsHr~g~~W--vMRrRsq~EmD~ 284 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQL--EMIAR--VLTSHRDGKAW--VMRRRSQAEMDQ 284 (311)
T ss_pred CEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcch--HHHHH--HHhcccCCCce--EEEecCHHHHHH
Confidence 8999999999999977 56679999999999999976543222111 01111 1111100 000 025789999999
Q ss_pred HHHhcCCCeeEE-EEeCCceEEEEEEC
Q 038113 87 LVTGAGFGGIRF-ESFICNLWVMEFYK 112 (112)
Q Consensus 87 ll~~aGf~~~~~-~~~~~~~~vie~~~ 112 (112)
|.++|||+-.+. +.-.|-++|-.+++
T Consensus 285 Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 285 LVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHcCCchhhheeccCCceEEEeecC
Confidence 999999996643 33346677766654
No 68
>PLN03075 nicotianamine synthase; Provisional
Probab=97.62 E-value=7.5e-05 Score=52.43 Aligned_cols=37 Identities=14% Similarity=0.325 Sum_probs=34.0
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e 46 (112)
|+|++. ++|+|+.++..++|+++++.|+|||.+++--
T Consensus 197 DlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 197 DVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred CEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 999999 9999988888999999999999999998743
No 69
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.55 E-value=9.7e-05 Score=50.89 Aligned_cols=92 Identities=13% Similarity=0.002 Sum_probs=59.8
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHH
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTL 87 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (112)
-|+|+.+-++||..|. +.+++.+.+.|+|||+++|......-..-....--......+..-......+..+.++..++
T Consensus 159 fDaVvcsevleHV~dp--~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~ 236 (282)
T KOG1270|consen 159 FDAVVCSEVLEHVKDP--QEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSI 236 (282)
T ss_pred cceeeeHHHHHHHhCH--HHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHH
Confidence 3999999999999884 78999999999999999998764432110000000001111111000112345688999999
Q ss_pred HHhcCCCeeEEEEe
Q 038113 88 VTGAGFGGIRFESF 101 (112)
Q Consensus 88 l~~aGf~~~~~~~~ 101 (112)
++++|+++..+...
T Consensus 237 l~~~~~~v~~v~G~ 250 (282)
T KOG1270|consen 237 LNANGAQVNDVVGE 250 (282)
T ss_pred HHhcCcchhhhhcc
Confidence 99999998877643
No 70
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.52 E-value=0.0013 Score=44.11 Aligned_cols=71 Identities=14% Similarity=0.123 Sum_probs=52.5
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC-CCchhhhhhhhhchhhhhcCCCceecCHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLP-ETRTLSKIISQGDVLMMTQNPGGKERTKHELMTL 87 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (112)
|.++-+.++|+++.++....++++.++|+|||++++.-...++.. .+++ ...+.+|++++
T Consensus 115 D~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp-------------------~~~~~~eL~~~ 175 (213)
T TIGR03840 115 DAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPP-------------------FSVSPAEVEAL 175 (213)
T ss_pred CEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcC-------------------CCCCHHHHHHH
Confidence 999999999999999999999999999999999877766543221 1110 12578899998
Q ss_pred HHhcCCCeeEEE
Q 038113 88 VTGAGFGGIRFE 99 (112)
Q Consensus 88 l~~aGf~~~~~~ 99 (112)
+.. +|.+..+.
T Consensus 176 f~~-~~~i~~~~ 186 (213)
T TIGR03840 176 YGG-HYEIELLE 186 (213)
T ss_pred hcC-CceEEEEe
Confidence 863 45555443
No 71
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.38 E-value=0.0016 Score=45.09 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=55.7
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLV 88 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 88 (112)
|+++++-.|..-+ ....++++++.|++||.++|.|.-. + + -+..++.+-|
T Consensus 230 DvaV~CLSLMgtn---~~df~kEa~RiLk~gG~l~IAEv~S---R-------f-----------------~dv~~f~r~l 279 (325)
T KOG3045|consen 230 DVAVFCLSLMGTN---LADFIKEANRILKPGGLLYIAEVKS---R-------F-----------------SDVKGFVRAL 279 (325)
T ss_pred cEEEeeHhhhccc---HHHHHHHHHHHhccCceEEEEehhh---h-------c-----------------ccHHHHHHHH
Confidence 9999888886543 3579999999999999999988421 1 0 1233478888
Q ss_pred HhcCCCeeEEEEeCCceEEEEEEC
Q 038113 89 TGAGFGGIRFESFICNLWVMEFYK 112 (112)
Q Consensus 89 ~~aGf~~~~~~~~~~~~~vie~~~ 112 (112)
...||......-....+.++|+.|
T Consensus 280 ~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 280 TKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred HHcCCeeeehhhhcceEEEEEEec
Confidence 899999887766667788888764
No 72
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.37 E-value=0.0009 Score=44.50 Aligned_cols=82 Identities=12% Similarity=0.070 Sum_probs=55.5
Q ss_pred CCcc-cEEEeccccccCC-----hHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCcee
Q 038113 5 VAKG-DAIYMKWILHDWS-----DEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKE 78 (112)
Q Consensus 5 ~P~~-D~v~~~~vlh~~~-----d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 78 (112)
.|+. |+++....-|++. ..-+.++-+.++++|||||.++|.|........... -.. - ..
T Consensus 119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~d-------t~~-------~-~r 183 (238)
T COG4798 119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSD-------TIT-------L-HR 183 (238)
T ss_pred CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhh-------hhh-------h-cc
Confidence 3444 7777755555433 344789999999999999999999998765422110 000 1 12
Q ss_pred cCHHHHHHHHHhcCCCeeEEEEe
Q 038113 79 RTKHELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 79 rt~~e~~~ll~~aGf~~~~~~~~ 101 (112)
++.+...+-.+++||+..--..+
T Consensus 184 i~~a~V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 184 IDPAVVIAEVEAAGFKLEAESEI 206 (238)
T ss_pred cChHHHHHHHHhhcceeeeeehh
Confidence 46778888999999998765544
No 73
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.35 E-value=0.00052 Score=45.46 Aligned_cols=76 Identities=12% Similarity=0.014 Sum_probs=50.5
Q ss_pred CCcc-cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHH
Q 038113 5 VAKG-DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHE 83 (112)
Q Consensus 5 ~P~~-D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e 83 (112)
+|+. |+|+...|+++++.+...++++++.++++|||..++...+..++ .+.+ .. ........|
T Consensus 91 ~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d-~p~~-------~~--------~~f~~~~~E 154 (192)
T PF03848_consen 91 FPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPD-YPCP-------SP--------FPFLLKPGE 154 (192)
T ss_dssp -TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SS-S--S-------S----------S--B-TTH
T ss_pred ccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCC-CCCC-------CC--------CCcccCHHH
Confidence 3444 99998899999999989999999999999999998866543222 1110 01 112245678
Q ss_pred HHHHHHhcCCCeeEE
Q 038113 84 LMTLVTGAGFGGIRF 98 (112)
Q Consensus 84 ~~~ll~~aGf~~~~~ 98 (112)
+++.+ +|++++..
T Consensus 155 L~~~y--~dW~il~y 167 (192)
T PF03848_consen 155 LREYY--ADWEILKY 167 (192)
T ss_dssp HHHHT--TTSEEEEE
T ss_pred HHHHh--CCCeEEEE
Confidence 88888 58887664
No 74
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.33 E-value=0.0029 Score=42.68 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=52.5
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC-CCchhhhhhhhhchhhhhcCCCceecCHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLP-ETRTLSKIISQGDVLMMTQNPGGKERTKHELMTL 87 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (112)
|.++-+.++|+++.+...+.++++.++|+|||+++++....++.. .+|+ ...|.+|++++
T Consensus 118 d~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp-------------------~~~~~~el~~~ 178 (218)
T PRK13255 118 DAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPP-------------------FSVSDEEVEAL 178 (218)
T ss_pred eEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCC-------------------CCCCHHHHHHH
Confidence 999999999999999999999999999999998666544443221 1111 13578999999
Q ss_pred HHhcCCCeeEEEE
Q 038113 88 VTGAGFGGIRFES 100 (112)
Q Consensus 88 l~~aGf~~~~~~~ 100 (112)
+.. +|.+..+..
T Consensus 179 ~~~-~~~i~~~~~ 190 (218)
T PRK13255 179 YAG-CFEIELLER 190 (218)
T ss_pred hcC-CceEEEeee
Confidence 953 266655543
No 75
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.33 E-value=0.00012 Score=43.03 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=29.1
Q ss_pred cEEEec-cccccCChHHHHHHHHHHHhhCCCCC
Q 038113 9 DAIYMK-WILHDWSDEHCLKLFKKCYKSIPKDG 40 (112)
Q Consensus 9 D~v~~~-~vlh~~~d~~~~~iL~~~~~aL~pgg 40 (112)
|+|+.+ .++|++++++..++++++++.|+|||
T Consensus 69 D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 69 DLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred eEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 999995 45999999999999999999999997
No 76
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.28 E-value=0.001 Score=44.33 Aligned_cols=47 Identities=15% Similarity=0.296 Sum_probs=38.4
Q ss_pred CCCCcc--cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 038113 3 QNVAKG--DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPK 51 (112)
Q Consensus 3 ~~~P~~--D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~ 51 (112)
++.+++ |+|++..+||++++++..++++++++.+ ++.++|.|...+.
T Consensus 99 ~~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 99 DPFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred CCCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 455543 9999999999999888899999999986 6788888876543
No 77
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.27 E-value=0.00026 Score=48.79 Aligned_cols=82 Identities=10% Similarity=0.037 Sum_probs=55.8
Q ss_pred CCc-ccEEEeccccccCC--hHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCH
Q 038113 5 VAK-GDAIYMKWILHDWS--DEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTK 81 (112)
Q Consensus 5 ~P~-~D~v~~~~vlh~~~--d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~ 81 (112)
+|+ +|+++...+|...+ .++-.+.++++.+.|+|||.|+++...- .+. + ..+-... ..-..++
T Consensus 155 ~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~-~t~----Y-----~vG~~~F----~~l~l~e 220 (256)
T PF01234_consen 155 LPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG-STY----Y-----MVGGHKF----PCLPLNE 220 (256)
T ss_dssp S-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS--SE----E-----EETTEEE----E---B-H
T ss_pred CccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC-cee----E-----EECCEec----ccccCCH
Confidence 465 79999999998765 3558899999999999999999987532 220 0 0000000 1112489
Q ss_pred HHHHHHHHhcCCCeeEEEE
Q 038113 82 HELMTLVTGAGFGGIRFES 100 (112)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~~ 100 (112)
+.+++-|+++||.+.+...
T Consensus 221 e~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 221 EFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp HHHHHHHHHTTEEEEEEEG
T ss_pred HHHHHHHHHcCCEEEeccc
Confidence 9999999999999988774
No 78
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.22 E-value=0.0016 Score=42.86 Aligned_cols=88 Identities=10% Similarity=0.015 Sum_probs=48.9
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCch-hhh--h--hhhhchhhhhcCCCceecCHH
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRT-LSK--I--ISQGDVLMMTQNPGGKERTKH 82 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~-~~~--~--~~~~~~~~~~~~~~g~~rt~~ 82 (112)
.|+|++.+++|+++|. .++|+++.+.+ +.+++.-+.......... ..+ . ...+..... ...+.+..+.+
T Consensus 76 fD~Vi~~~~l~~~~d~--~~~l~e~~r~~---~~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~ 149 (194)
T TIGR02081 76 FDYVILSQTLQATRNP--EEILDEMLRVG---RHAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWY-NTPNIHFCTIA 149 (194)
T ss_pred cCEEEEhhHhHcCcCH--HHHHHHHHHhC---CeEEEEcCChhHHHHHHHHHhCCccccCCCCCcccc-CCCCcccCcHH
Confidence 3999999999999874 57888887764 444432111100000000 000 0 000000000 01123456999
Q ss_pred HHHHHHHhcCCCeeEEEEe
Q 038113 83 ELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 83 e~~~ll~~aGf~~~~~~~~ 101 (112)
++.++++++||++++....
T Consensus 150 ~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 150 DFEDLCGELNLRILDRAAF 168 (194)
T ss_pred HHHHHHHHCCCEEEEEEEe
Confidence 9999999999999887654
No 79
>PRK14968 putative methyltransferase; Provisional
Probab=96.94 E-value=0.024 Score=36.51 Aligned_cols=59 Identities=15% Similarity=0.269 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCeeEEEEeC--
Q 038113 25 CLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFESFI-- 102 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-- 102 (112)
...+++++.+.|+|||.+++..... ...+++.++++++||+...+....
T Consensus 127 ~~~~i~~~~~~Lk~gG~~~~~~~~~-----------------------------~~~~~l~~~~~~~g~~~~~~~~~~~~ 177 (188)
T PRK14968 127 IDRFLDEVGRYLKPGGRILLLQSSL-----------------------------TGEDEVLEYLEKLGFEAEVVAEEKFP 177 (188)
T ss_pred HHHHHHHHHHhcCCCeEEEEEEccc-----------------------------CCHHHHHHHHHHCCCeeeeeeecccC
Confidence 4678999999999999988753100 123567889999999987765432
Q ss_pred -CceEEEEEEC
Q 038113 103 -CNLWVMEFYK 112 (112)
Q Consensus 103 -~~~~vie~~~ 112 (112)
....+++.+|
T Consensus 178 ~~~~~~~~~~~ 188 (188)
T PRK14968 178 FEELIVLELVK 188 (188)
T ss_pred CceEEEEEEeC
Confidence 2344555543
No 80
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.91 E-value=0.0043 Score=42.88 Aligned_cols=82 Identities=22% Similarity=0.298 Sum_probs=52.2
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC-------CC-chhhhhhhhhchhhhhcCCCceecC
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLP-------ET-RTLSKIISQGDVLMMTQNPGGKERT 80 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~g~~rt 80 (112)
|+|-+-|+|..-.+ ...+|+.++++|+|+|++++.= +.|=.+ .. ++.+ .+++ .+..-+-.
T Consensus 153 DvIscLNvLDRc~~--P~~LL~~i~~~l~p~G~lilAv-VlP~~pyVE~~~g~~~~P~e----~l~~-----~g~~~E~~ 220 (265)
T PF05219_consen 153 DVISCLNVLDRCDR--PLTLLRDIRRALKPNGRLILAV-VLPFRPYVEFGGGKSNRPSE----LLPV-----KGATFEEQ 220 (265)
T ss_pred EEEeehhhhhccCC--HHHHHHHHHHHhCCCCEEEEEE-EecccccEEcCCCCCCCchh----hcCC-----CCCcHHHH
Confidence 99999999977655 5799999999999999988754 333211 00 1110 1111 11111112
Q ss_pred HHHHHHHHHhcCCCeeEEEEeC
Q 038113 81 KHELMTLVTGAGFGGIRFESFI 102 (112)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~ 102 (112)
.+.+.+.|+.+||++++..+.+
T Consensus 221 v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 221 VSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred HHHHHHHHHhcCCEEEEEeccC
Confidence 2344588999999999887664
No 81
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.91 E-value=0.019 Score=39.31 Aligned_cols=68 Identities=18% Similarity=0.131 Sum_probs=48.7
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHH
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTL 87 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (112)
.|+|+.. +. .+....+++++.+.|+|||++++.+.... ..+++.+.
T Consensus 180 fD~Vvan-i~----~~~~~~l~~~~~~~LkpgG~lilsgi~~~-----------------------------~~~~v~~~ 225 (250)
T PRK00517 180 ADVIVAN-IL----ANPLLELAPDLARLLKPGGRLILSGILEE-----------------------------QADEVLEA 225 (250)
T ss_pred cCEEEEc-Cc----HHHHHHHHHHHHHhcCCCcEEEEEECcHh-----------------------------hHHHHHHH
Confidence 3777653 22 23356789999999999999998643211 24577889
Q ss_pred HHhcCCCeeEEEEeCCceEEEE
Q 038113 88 VTGAGFGGIRFESFICNLWVME 109 (112)
Q Consensus 88 l~~aGf~~~~~~~~~~~~~vie 109 (112)
+++.||+..+....+...+++-
T Consensus 226 l~~~Gf~~~~~~~~~~W~~~~~ 247 (250)
T PRK00517 226 YEEAGFTLDEVLERGEWVALVG 247 (250)
T ss_pred HHHCCCEEEEEEEeCCEEEEEE
Confidence 9999999998887766666543
No 82
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.90 E-value=0.005 Score=40.17 Aligned_cols=59 Identities=12% Similarity=0.202 Sum_probs=42.5
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHH
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTL 87 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (112)
.|++++....+++ ..+++++++.|+|||++++..... -+.+++.++
T Consensus 98 ~D~v~~~~~~~~~-----~~~l~~~~~~Lk~gG~lv~~~~~~-----------------------------~~~~~~~~~ 143 (187)
T PRK08287 98 ADAIFIGGSGGNL-----TAIIDWSLAHLHPGGRLVLTFILL-----------------------------ENLHSALAH 143 (187)
T ss_pred CCEEEECCCccCH-----HHHHHHHHHhcCCCeEEEEEEecH-----------------------------hhHHHHHHH
Confidence 3999987765443 458999999999999998744211 124577788
Q ss_pred HHhcCCCeeEEEE
Q 038113 88 VTGAGFGGIRFES 100 (112)
Q Consensus 88 l~~aGf~~~~~~~ 100 (112)
+++.||+.+++..
T Consensus 144 l~~~g~~~~~~~~ 156 (187)
T PRK08287 144 LEKCGVSELDCVQ 156 (187)
T ss_pred HHHCCCCcceEEE
Confidence 9999998776543
No 83
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.77 E-value=0.00046 Score=44.25 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=37.2
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
+|+++..+|+-|++-+|-...++.|++.|+|||.|-|.-+
T Consensus 48 ~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 48 VDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 4999999999999999999999999999999999988744
No 84
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.72 E-value=0.0052 Score=34.76 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=32.3
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~ 45 (112)
.|++++...++.+ .+....+++++.+.|+|||.+++.
T Consensus 67 ~d~i~~~~~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 67 FDVIISDPPLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eEEEEEccceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4999999999885 455789999999999999999875
No 85
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.71 E-value=0.011 Score=39.88 Aligned_cols=47 Identities=11% Similarity=0.195 Sum_probs=35.9
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCeeEEEEeC
Q 038113 26 LKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFESFI 102 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 102 (112)
..+++++.+.|+|||.+++.. . ....+++.++|+++||+.+++....
T Consensus 197 ~~~i~~~~~~L~~gG~~~~~~-----~-------------------------~~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 197 RRIIAQAPRLLKPGGWLLLEI-----G-------------------------YDQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred HHHHHHHHHhcccCCEEEEEE-----C-------------------------ccHHHHHHHHHHhCCCCceEEEeCC
Confidence 478999999999999987721 0 0124678999999999988877653
No 86
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.70 E-value=0.0093 Score=40.53 Aligned_cols=43 Identities=9% Similarity=0.058 Sum_probs=39.4
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPK 51 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~ 51 (112)
|+|+=+.+|+.++++...+..+++.+.|+|||+++++-.-.+.
T Consensus 126 D~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~ 168 (226)
T PRK13256 126 DIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDK 168 (226)
T ss_pred CeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCC
Confidence 9999999999999999999999999999999999998765443
No 87
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=96.33 E-value=0.012 Score=39.79 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=51.9
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC-CCchhhhhhhhhchhhhhcCCCceecCHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLP-ETRTLSKIISQGDVLMMTQNPGGKERTKHELMTL 87 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (112)
|+|+=+.+|+-++.+...+-.+++.+.|+|||+++++-...+... .+|++ ..+.+|++++
T Consensus 118 D~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf-------------------~v~~~ev~~l 178 (218)
T PF05724_consen 118 DLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPF-------------------SVTEEEVREL 178 (218)
T ss_dssp EEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS-----------------------HHHHHHH
T ss_pred eEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCC-------------------CCCHHHHHHH
Confidence 999999999999999999999999999999999555444333221 12221 1368899999
Q ss_pred HHhcCCCeeEEEE
Q 038113 88 VTGAGFGGIRFES 100 (112)
Q Consensus 88 l~~aGf~~~~~~~ 100 (112)
+. .+|++.....
T Consensus 179 ~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 179 FG-PGFEIEELEE 190 (218)
T ss_dssp HT-TTEEEEEEEE
T ss_pred hc-CCcEEEEEec
Confidence 98 7888776653
No 88
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.22 E-value=0.014 Score=42.50 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=31.6
Q ss_pred cEEEecccc---ccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 038113 9 DAIYMKWIL---HDWSDEHCLKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 9 D~v~~~~vl---h~~~d~~~~~iL~~~~~aL~pgg~l~i~e 46 (112)
|+|++.--+ |.++++.+.++++.+++.|+|||+++++-
T Consensus 300 DlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 300 NAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 999986444 44677778899999999999999999984
No 89
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=96.19 E-value=0.015 Score=41.76 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=32.9
Q ss_pred cEEEeccccccC---ChHHHHHHHHHHHhhCCCCCEEEEEee
Q 038113 9 DAIYMKWILHDW---SDEHCLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 9 D~v~~~~vlh~~---~d~~~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
|+|+..-.+|+. +.+...++++++.+.|+|||+++|+-.
T Consensus 263 DlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 263 DMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred cEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 999998888863 344578999999999999999998654
No 90
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.17 E-value=0.01 Score=42.42 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=32.5
Q ss_pred cccEEEecccccc-CC-hHHHHHHHHHHHhhCCCCCEEEE
Q 038113 7 KGDAIYMKWILHD-WS-DEHCLKLFKKCYKSIPKDGMVII 44 (112)
Q Consensus 7 ~~D~v~~~~vlh~-~~-d~~~~~iL~~~~~aL~pgg~l~i 44 (112)
..|+|-+..++|. |. .+++..+|+|+.+.|+|||..+=
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 3599999999998 55 45599999999999999998764
No 91
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.10 E-value=0.013 Score=41.73 Aligned_cols=42 Identities=5% Similarity=0.130 Sum_probs=35.7
Q ss_pred cEEEeccccccCChHHHHHHHHHHHh-hCCCCCEEEEE-eeecC
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYK-SIPKDGMVIIV-ETILP 50 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~-aL~pgg~l~i~-e~~~~ 50 (112)
-++++.+.+.+++++++..+|+++++ .|+||+.++|- |...+
T Consensus 159 ~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~ 202 (319)
T TIGR03439 159 TILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKD 202 (319)
T ss_pred EEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 56777789999999999999999999 99999888774 55443
No 92
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.03 E-value=0.11 Score=35.69 Aligned_cols=57 Identities=12% Similarity=0.194 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCeeEEEE-eCC
Q 038113 25 CLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFES-FIC 103 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~-~~~ 103 (112)
..++++++.+.|+|||.+++ +. +. ...+++.+++++.||+.+++.. ..+
T Consensus 217 ~~~~~~~~~~~Lk~gG~l~~-e~--g~---------------------------~~~~~~~~~l~~~gf~~v~~~~d~~~ 266 (275)
T PRK09328 217 YRRIIEQAPRYLKPGGWLLL-EI--GY---------------------------DQGEAVRALLAAAGFADVETRKDLAG 266 (275)
T ss_pred HHHHHHHHHHhcccCCEEEE-EE--Cc---------------------------hHHHHHHHHHHhCCCceeEEecCCCC
Confidence 46789999999999999987 21 00 1134688999999999777653 334
Q ss_pred ceEEEEEE
Q 038113 104 NLWVMEFY 111 (112)
Q Consensus 104 ~~~vie~~ 111 (112)
...++.++
T Consensus 267 ~~r~~~~~ 274 (275)
T PRK09328 267 RDRVVLGR 274 (275)
T ss_pred CceEEEEE
Confidence 44444443
No 93
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=96.00 E-value=0.033 Score=37.82 Aligned_cols=101 Identities=8% Similarity=0.029 Sum_probs=60.5
Q ss_pred cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhh---hhhchhhhhc-CCCceecCHH
Q 038113 7 KGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKII---SQGDVLMMTQ-NPGGKERTKH 82 (112)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~g~~rt~~ 82 (112)
+.|+++...+||-++|. .++|.++...|.|||.|.+.-+-.-+.+.- ...+.. .-+...+... ...+..-+.+
T Consensus 92 ~~dllfaNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQmPdN~depsH-~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a 168 (257)
T COG4106 92 PTDLLFANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQMPDNLDEPSH-RLMRETADEAPFAQELGGRGLTRAPLPSPA 168 (257)
T ss_pred ccchhhhhhhhhhcccc--HHHHHHHHHhhCCCceEEEECCCccCchhH-HHHHHHHhcCchhhhhCccccccCCCCCHH
Confidence 35999999999999986 689999999999999998864322222111 000000 0111111100 0123344889
Q ss_pred HHHHHHHhcCCCeeEEEEe------CCceEEEEEE
Q 038113 83 ELMTLVTGAGFGGIRFESF------ICNLWVMEFY 111 (112)
Q Consensus 83 e~~~ll~~aGf~~~~~~~~------~~~~~vie~~ 111 (112)
.|.++|...+- .+++.++ .+...|||=+
T Consensus 169 ~Yy~lLa~~~~-rvDiW~T~Y~h~l~~a~aIvdWv 202 (257)
T COG4106 169 AYYELLAPLAC-RVDIWHTTYYHQLPGADAIVDWV 202 (257)
T ss_pred HHHHHhCcccc-eeeeeeeeccccCCCccchhhhe
Confidence 99999988874 4455443 3556666644
No 94
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=95.76 E-value=0.065 Score=35.04 Aligned_cols=32 Identities=16% Similarity=0.096 Sum_probs=24.7
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~ 45 (112)
.|+|++.. +|++ ..+++.+++.|+|||++++.
T Consensus 110 fD~I~s~~-~~~~-----~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 110 FDVITSRA-LASL-----NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ccEEEehh-hhCH-----HHHHHHHHHhcCCCCEEEEE
Confidence 39887755 5543 34788889999999999976
No 95
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=95.56 E-value=0.12 Score=36.14 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=52.4
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLV 88 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 88 (112)
|+|+.+.++.- -+....-|..|.+.|+|||..+-+-+..-..... + .....+-+.|.+|+.++.
T Consensus 167 d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~----------~----~~~~~sveLs~eEi~~l~ 230 (270)
T PF07942_consen 167 DVVVTCFFIDT--AENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM----------S----IPNEMSVELSLEEIKELI 230 (270)
T ss_pred cEEEEEEEeec--hHHHHHHHHHHHHHhccCCEEEecCCccccCCCC----------C----CCCCcccCCCHHHHHHHH
Confidence 99988877643 3337899999999999999665554444322110 0 001123456899999999
Q ss_pred HhcCCCeeEEEE
Q 038113 89 TGAGFGGIRFES 100 (112)
Q Consensus 89 ~~aGf~~~~~~~ 100 (112)
++.||+.++...
T Consensus 231 ~~~GF~~~~~~~ 242 (270)
T PF07942_consen 231 EKLGFEIEKEES 242 (270)
T ss_pred HHCCCEEEEEEE
Confidence 999999986654
No 96
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=95.53 E-value=0.019 Score=34.26 Aligned_cols=33 Identities=6% Similarity=0.213 Sum_probs=26.3
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~ 45 (112)
.|++++....+ ...++++++++.|+|||++++.
T Consensus 89 ~D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CCEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 39998866443 3458999999999999999874
No 97
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=95.41 E-value=0.1 Score=34.41 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=24.8
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEE
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVII 44 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i 44 (112)
.|+|++.. ..++...+++.+.+.|+|||++++
T Consensus 112 ~D~V~~~~-----~~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 112 FDRIFIGG-----GSEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CCEEEECC-----CcccHHHHHHHHHHHcCCCcEEEE
Confidence 38888743 223456899999999999999976
No 98
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.31 E-value=0.0045 Score=37.36 Aligned_cols=82 Identities=17% Similarity=0.285 Sum_probs=42.1
Q ss_pred cEEEeccc----cccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhh---hhhhchhhhhcCCCceecCH
Q 038113 9 DAIYMKWI----LHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKI---ISQGDVLMMTQNPGGKERTK 81 (112)
Q Consensus 9 D~v~~~~v----lh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~rt~ 81 (112)
|++++.+| =-+|.|+-...+++++++.|+|||.+++ |+ .+-.. +.+. ......+. ..-....
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-Ep----Q~w~s-Y~~~~~~~~~~~~n~-----~~i~lrP 71 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EP----QPWKS-YKKAKRLSEEIRENY-----KSIKLRP 71 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E-------HHH-HHTTTTS-HHHHHHH-----HH----G
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eC----CCcHH-HHHHhhhhHHHHhHH-----hceEECh
Confidence 55555443 2257899999999999999999999866 42 11111 0000 00011111 1111234
Q ss_pred HHHHHHHHh--cCCCeeEEEEe
Q 038113 82 HELMTLVTG--AGFGGIRFESF 101 (112)
Q Consensus 82 ~e~~~ll~~--aGf~~~~~~~~ 101 (112)
+++.++|.+ .||+..+....
T Consensus 72 ~~F~~~L~~~evGF~~~e~~~~ 93 (110)
T PF06859_consen 72 DQFEDYLLEPEVGFSSVEELGV 93 (110)
T ss_dssp GGHHHHHTSTTT---EEEEE--
T ss_pred HHHHHHHHhcccceEEEEEccc
Confidence 478888887 59998876654
No 99
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=95.17 E-value=0.2 Score=32.99 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=26.1
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e 46 (112)
.|+|++..+ .+ ...+++.+++.|+|||++++.+
T Consensus 113 fDlV~~~~~----~~--~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 113 FDVVTSRAV----AS--LSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred ccEEEEccc----cC--HHHHHHHHHHhcCCCeEEEEEe
Confidence 399987652 22 4579999999999999999874
No 100
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=95.16 E-value=0.056 Score=36.13 Aligned_cols=39 Identities=5% Similarity=0.048 Sum_probs=28.7
Q ss_pred cEEEeccccccCChHH---------HHHHHHHHHhhCCCCCEEEEEee
Q 038113 9 DAIYMKWILHDWSDEH---------CLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~---------~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
|+|+.....|...+.. ...+|+++++.|+|||.+++..+
T Consensus 119 D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 119 QVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 9998765555443211 25689999999999999999754
No 101
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=95.15 E-value=0.032 Score=40.78 Aligned_cols=48 Identities=10% Similarity=0.127 Sum_probs=40.6
Q ss_pred CCCcc--cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 038113 4 NVAKG--DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPK 51 (112)
Q Consensus 4 ~~P~~--D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~ 51 (112)
..|++ |.+.++.+.--+++++..++++++.++++|||+++.=....+.
T Consensus 290 ~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 290 RLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred hCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 45544 9999999998888999999999999999999999887655443
No 102
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=94.98 E-value=0.025 Score=40.55 Aligned_cols=39 Identities=18% Similarity=0.334 Sum_probs=32.8
Q ss_pred cEEEecccccc-CC-hHHHHHHHHHHHhhCCCCCEEEEEee
Q 038113 9 DAIYMKWILHD-WS-DEHCLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 9 D~v~~~~vlh~-~~-d~~~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
|+|-+...||. +. .+.+..+|+++.+.|+|||.++..-+
T Consensus 147 DvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 147 DVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp EEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 99999999998 44 45588899999999999999987654
No 103
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=94.74 E-value=0.056 Score=35.86 Aligned_cols=38 Identities=11% Similarity=0.057 Sum_probs=26.8
Q ss_pred cEEEeccccccC------ChHHHHHHHHHHHhhCCCCCEEEEEe
Q 038113 9 DAIYMKWILHDW------SDEHCLKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 9 D~v~~~~vlh~~------~d~~~~~iL~~~~~aL~pgg~l~i~e 46 (112)
|++++....+.. .......+|+++++.|+|||.+++..
T Consensus 113 D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 113 DRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred ceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 888876543211 11123679999999999999999864
No 104
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=94.69 E-value=0.056 Score=34.80 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=32.6
Q ss_pred CCCCCc-c-cEEEeccccccCCh---HHHHHHHHHHHhhCCCCCEEEEEee
Q 038113 2 FQNVAK-G-DAIYMKWILHDWSD---EHCLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 2 f~~~P~-~-D~v~~~~vlh~~~d---~~~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
|++++. . |++++.=-+|.-.+ +-..++++.+.+.|+|||+++++-.
T Consensus 91 ~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 91 FEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 456663 3 99988776766554 3468999999999999999987543
No 105
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.44 E-value=0.035 Score=40.32 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=34.6
Q ss_pred CCCcccEEEeccccccCChHH----HHHHHHHHHhhCCCCCEEEEEeeec
Q 038113 4 NVAKGDAIYMKWILHDWSDEH----CLKLFKKCYKSIPKDGMVIIVETIL 49 (112)
Q Consensus 4 ~~P~~D~v~~~~vlh~~~d~~----~~~iL~~~~~aL~pgg~l~i~e~~~ 49 (112)
++|.+|.|.+..++|.+=.+. ..-.++++-+.+.|||.++|+|.-.
T Consensus 179 ~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 179 SLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred CCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 466678888777777654433 3448899999999999999999633
No 106
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=94.33 E-value=0.097 Score=36.49 Aligned_cols=44 Identities=14% Similarity=0.344 Sum_probs=36.2
Q ss_pred CCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 038113 5 VAKGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILP 50 (112)
Q Consensus 5 ~P~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~ 50 (112)
++..|+|+++|+|-.+++++...+++++-+.+.+ .|+|+|+-.+
T Consensus 100 ~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 100 FPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred CCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 3345999999999999998888999998887666 9999997443
No 107
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=94.25 E-value=0.3 Score=33.83 Aligned_cols=84 Identities=11% Similarity=0.026 Sum_probs=53.7
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCch-hhhhhh--h--hchhhhhcCCCceecCHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRT-LSKIIS--Q--GDVLMMTQNPGGKERTKHE 83 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~-~~~~~~--~--~~~~~~~~~~~g~~rt~~e 83 (112)
-++++-.++..++.++..++|+.+.+...||+.++ .|.+.+-...... ..+... . .....+. . ..+.++
T Consensus 160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~ 233 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLA-FDYVRPLDGEWRAGMRAPVYHAARGVDGSGLV---F--GIDRAD 233 (260)
T ss_pred eeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEE-EEeccccchhHHHHHHHHHHHhhhcccccccc---c--CCChhh
Confidence 47778889999999999999999999888888776 4665541111100 000000 0 0111110 1 136789
Q ss_pred HHHHHHhcCCCeeEE
Q 038113 84 LMTLVTGAGFGGIRF 98 (112)
Q Consensus 84 ~~~ll~~aGf~~~~~ 98 (112)
..++|++.||+....
T Consensus 234 ~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 234 VAEWLAERGWRASEH 248 (260)
T ss_pred HHHHHHHCCCeeecC
Confidence 999999999998754
No 108
>PRK14967 putative methyltransferase; Provisional
Probab=94.02 E-value=0.87 Score=30.50 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeec
Q 038113 25 CLKLFKKCYKSIPKDGMVIIVETIL 49 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~e~~~ 49 (112)
...+++++.+.|+|||+++++..-.
T Consensus 138 ~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 138 LDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEecc
Confidence 4568899999999999999875543
No 109
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=93.92 E-value=0.072 Score=37.39 Aligned_cols=40 Identities=13% Similarity=0.127 Sum_probs=35.2
Q ss_pred ccEEEeccccccCChHH-HHHHHHHHHhhCCCCCEEEEEee
Q 038113 8 GDAIYMKWILHDWSDEH-CLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~-~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
.|..+...++|+|+-.. ..++++++.+.++|||..+|.-+
T Consensus 104 ~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 104 FDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 39999999999999644 88999999999999999877654
No 110
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=93.89 E-value=0.1 Score=36.08 Aligned_cols=84 Identities=18% Similarity=0.326 Sum_probs=50.0
Q ss_pred CCcccEEEe----ccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecC
Q 038113 5 VAKGDAIYM----KWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERT 80 (112)
Q Consensus 5 ~P~~D~v~~----~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt 80 (112)
.|.-|+++. .||=-+|.|+-..++++++.+.|.|||.|++ | +.+-.. +.+.+.... -...+..--...
T Consensus 164 ~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv-E----PQpWks-Y~kaar~~e--~~~~ny~~i~lk 235 (288)
T KOG2899|consen 164 QPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV-E----PQPWKS-YKKAARRSE--KLAANYFKIFLK 235 (288)
T ss_pred cccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE-c----CCchHH-HHHHHHHHH--HhhcCccceecC
Confidence 344477765 3454579999999999999999999999866 3 222221 111111110 010111223347
Q ss_pred HHHHHHHHHhc--CCCee
Q 038113 81 KHELMTLVTGA--GFGGI 96 (112)
Q Consensus 81 ~~e~~~ll~~a--Gf~~~ 96 (112)
.+.+..|+.+. ||+.+
T Consensus 236 p~~f~~~l~q~~vgle~~ 253 (288)
T KOG2899|consen 236 PEDFEDWLNQIVVGLESV 253 (288)
T ss_pred HHHHHhhhhhhhhheeee
Confidence 88999999987 55443
No 111
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=93.44 E-value=1 Score=30.02 Aligned_cols=89 Identities=8% Similarity=-0.012 Sum_probs=56.9
Q ss_pred CCCcc--cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCC---------Cchhhhh-hhhhchhhhh
Q 038113 4 NVAKG--DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPE---------TRTLSKI-ISQGDVLMMT 71 (112)
Q Consensus 4 ~~P~~--D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~---------~~~~~~~-~~~~~~~~~~ 71 (112)
.+|+. |.|+++..|..+... .++|+++.+. |.+.+|.=+....-.. .|..... ..++
T Consensus 70 ~f~d~sFD~VIlsqtLQ~~~~P--~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WY------ 138 (193)
T PF07021_consen 70 DFPDQSFDYVILSQTLQAVRRP--DEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWY------ 138 (193)
T ss_pred hCCCCCccEEehHhHHHhHhHH--HHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCccc------
Confidence 45653 999999999998774 5788888665 6677665443221100 0000000 0111
Q ss_pred cCCCceecCHHHHHHHHHhcCCCeeEEEEeCC
Q 038113 72 QNPGGKERTKHELMTLVTGAGFGGIRFESFIC 103 (112)
Q Consensus 72 ~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 103 (112)
.++|=+.-|..+++++.++.|+++++...+.+
T Consensus 139 dTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 139 DTPNIHLCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred CCCCcccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 13344556999999999999999999887754
No 112
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.24 E-value=0.54 Score=33.30 Aligned_cols=88 Identities=11% Similarity=-0.007 Sum_probs=55.2
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCc--hhh-hhhhhhchhhhhcCCCceecCHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETR--TLS-KIISQGDVLMMTQNPGGKERTKHELM 85 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~g~~rt~~e~~ 85 (112)
-++++-.++..++.++..++|++|....+||++++......+...... ... ......+....-. .-......++.
T Consensus 172 t~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~--~~~~~~~~e~~ 249 (297)
T COG3315 172 TLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGEL--VYFGDDPAEIE 249 (297)
T ss_pred eEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccc--eeccCCHHHHH
Confidence 478888899999999999999999999999998877654122111110 000 0000001100000 01124578999
Q ss_pred HHHHhcCCCeeEE
Q 038113 86 TLVTGAGFGGIRF 98 (112)
Q Consensus 86 ~ll~~aGf~~~~~ 98 (112)
.++.+.||..+..
T Consensus 250 ~~l~~~g~~~~~~ 262 (297)
T COG3315 250 TWLAERGWRSTLN 262 (297)
T ss_pred HHHHhcCEEEEec
Confidence 9999999998766
No 113
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=92.11 E-value=0.2 Score=32.66 Aligned_cols=37 Identities=8% Similarity=0.130 Sum_probs=26.2
Q ss_pred cEEEeccccc---cCCh------HHHHHHHHHHHhhCCCCCEEEEE
Q 038113 9 DAIYMKWILH---DWSD------EHCLKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 9 D~v~~~~vlh---~~~d------~~~~~iL~~~~~aL~pgg~l~i~ 45 (112)
|+|+.....| .|+- +...++|+++++.|+|||++++.
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 9998743322 1221 22468999999999999999985
No 114
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.87 E-value=0.76 Score=31.75 Aligned_cols=78 Identities=15% Similarity=0.063 Sum_probs=55.7
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHH
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTL 87 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (112)
.|+|....||-.+.+- ..++--+...|+|||.+...---.+++.. + -+... .-...++.-++++
T Consensus 189 ~DLi~AaDVl~YlG~L--e~~~~~aa~~L~~gGlfaFSvE~l~~~~~--f--------~l~ps----~RyAH~~~YVr~~ 252 (287)
T COG4976 189 FDLIVAADVLPYLGAL--EGLFAGAAGLLAPGGLFAFSVETLPDDGG--F--------VLGPS----QRYAHSESYVRAL 252 (287)
T ss_pred ccchhhhhHHHhhcch--hhHHHHHHHhcCCCceEEEEecccCCCCC--e--------ecchh----hhhccchHHHHHH
Confidence 4999999999999884 57999999999999999876444443321 0 00000 0112367788999
Q ss_pred HHhcCCCeeEEEEe
Q 038113 88 VTGAGFGGIRFESF 101 (112)
Q Consensus 88 l~~aGf~~~~~~~~ 101 (112)
++..||+++++.++
T Consensus 253 l~~~Gl~~i~~~~t 266 (287)
T COG4976 253 LAASGLEVIAIEDT 266 (287)
T ss_pred HHhcCceEEEeecc
Confidence 99999999988765
No 115
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=91.64 E-value=0.23 Score=32.94 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=23.7
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~ 45 (112)
|++++...++++++ ++.+.|+|||++++.
T Consensus 144 D~Ii~~~~~~~~~~--------~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 144 DAIIVTAAASTIPS--------ALVRQLKDGGVLVIP 172 (205)
T ss_pred cEEEEccCcchhhH--------HHHHhcCcCcEEEEE
Confidence 99999988876653 567889999999874
No 116
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=91.60 E-value=0.22 Score=34.50 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=22.5
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
|+|+.... + ..++++++.|+|||+++++.+
T Consensus 153 D~I~~~~~----~-----~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 153 DAIIRIYA----P-----CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred eEEEEecC----C-----CCHHHHHhhccCCCEEEEEeC
Confidence 99975432 1 246788999999999998753
No 117
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=91.57 E-value=0.44 Score=31.36 Aligned_cols=40 Identities=25% Similarity=0.376 Sum_probs=31.5
Q ss_pred cEEEeccccccCCh----------HHHHHHHHHHHhhCCCCCEEEEEeee
Q 038113 9 DAIYMKWILHDWSD----------EHCLKLFKKCYKSIPKDGMVIIVETI 48 (112)
Q Consensus 9 D~v~~~~vlh~~~d----------~~~~~iL~~~~~aL~pgg~l~i~e~~ 48 (112)
|+|.+.+.|||++- +...++++++++.|+|+..++-.-+.
T Consensus 52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~ 101 (183)
T cd01842 52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAM 101 (183)
T ss_pred eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCC
Confidence 99999999999875 33678888888888888776655443
No 118
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=91.53 E-value=0.47 Score=35.07 Aligned_cols=27 Identities=4% Similarity=0.134 Sum_probs=23.7
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecCCC
Q 038113 26 LKLFKKCYKSIPKDGMVIIVETILPKL 52 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~e~~~~~~ 52 (112)
.++|+++.+.|+|||+++...+.....
T Consensus 348 ~~lL~~a~~~LkpgG~lvystcs~~~~ 374 (426)
T TIGR00563 348 SEILDAIWPLLKTGGTLVYATCSVLPE 374 (426)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence 689999999999999999998877544
No 119
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=91.49 E-value=0.43 Score=31.58 Aligned_cols=37 Identities=11% Similarity=0.269 Sum_probs=28.0
Q ss_pred CCCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 038113 4 NVAKGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 4 ~~P~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e 46 (112)
.+|..|++++.-- -. ...+|+.+.+.|+|||+|++.-
T Consensus 99 ~~~~~daiFIGGg-~~-----i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 99 DLPSPDAIFIGGG-GN-----IEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred CCCCCCEEEECCC-CC-----HHHHHHHHHHHcCcCCeEEEEe
Confidence 3444588888876 22 3569999999999999998743
No 120
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=91.31 E-value=1.6 Score=31.43 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=55.3
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLV 88 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 88 (112)
|+|+.++++. +.+....-|+.|...|+|||..+-+-+.+-.-...+ +. ....+-+.|.+++.++.
T Consensus 261 d~VvTcfFID--Ta~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~---------g~----~~~~siEls~edl~~v~ 325 (369)
T KOG2798|consen 261 DVVVTCFFID--TAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTH---------GV----ENEMSIELSLEDLKRVA 325 (369)
T ss_pred ceEEEEEEee--chHHHHHHHHHHHHhccCCcEEEeccceeeeccCCC---------CC----cccccccccHHHHHHHH
Confidence 9999887763 234478899999999999999887776654321110 00 01124567899999999
Q ss_pred HhcCCCeeEEEEe
Q 038113 89 TGAGFGGIRFESF 101 (112)
Q Consensus 89 ~~aGf~~~~~~~~ 101 (112)
+.-||++++...+
T Consensus 326 ~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 326 SHRGFEVEKERGI 338 (369)
T ss_pred HhcCcEEEEeeee
Confidence 9999999876644
No 121
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=91.25 E-value=0.54 Score=32.80 Aligned_cols=41 Identities=5% Similarity=0.130 Sum_probs=34.8
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE-eeec
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIV-ETIL 49 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~-e~~~ 49 (112)
=.+++...|-+++.++|...|..++.+|+||-.+++- |...
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k 197 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRK 197 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence 5778889999999999999999999999999776664 5443
No 122
>PRK04457 spermidine synthase; Provisional
Probab=90.26 E-value=0.35 Score=33.48 Aligned_cols=36 Identities=19% Similarity=0.452 Sum_probs=25.6
Q ss_pred cEEEecccccc--CChHH-HHHHHHHHHhhCCCCCEEEEE
Q 038113 9 DAIYMKWILHD--WSDEH-CLKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 9 D~v~~~~vlh~--~~d~~-~~~iL~~~~~aL~pgg~l~i~ 45 (112)
|+|++-. .+. .+... ..++++++++.|+|||.+++.
T Consensus 138 D~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 138 DVILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CEEEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 9997643 222 22111 268999999999999999885
No 123
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=90.26 E-value=0.55 Score=32.55 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=26.5
Q ss_pred cEEEeccccccCChHH--HHHHHHHHHhhCCCCCEEEEE
Q 038113 9 DAIYMKWILHDWSDEH--CLKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~--~~~iL~~~~~aL~pgg~l~i~ 45 (112)
|+|++...-+.-+... ..+.++++++.|+|||.+++.
T Consensus 147 DvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 147 DVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred cEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 8888765432222222 367899999999999999886
No 124
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=90.11 E-value=0.4 Score=32.00 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=22.9
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e 46 (112)
|+|++....++++ +.+.+.|+|||++++..
T Consensus 147 D~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 147 DRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 9999987765543 35667899999998853
No 125
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=89.81 E-value=2.1 Score=29.77 Aligned_cols=57 Identities=9% Similarity=0.176 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCeeEEEEeCC
Q 038113 25 CLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFESFIC 103 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 103 (112)
..++-+++++.|+|||+++=. + ..+... ..|+. -.....+.|+++||..++......
T Consensus 224 seefY~El~RiLkrgGrlFHY--v-G~Pg~r------------------yrG~d-~~~gVa~RLr~vGF~~v~~~~~~~ 280 (287)
T COG2521 224 SEEFYRELYRILKRGGRLFHY--V-GNPGKR------------------YRGLD-LPKGVAERLRRVGFEVVKKVREAL 280 (287)
T ss_pred HHHHHHHHHHHcCcCCcEEEE--e-CCCCcc------------------cccCC-hhHHHHHHHHhcCceeeeeehhcc
Confidence 467889999999999998532 2 211110 01211 245788999999999887765543
No 126
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=89.71 E-value=0.12 Score=38.88 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=38.6
Q ss_pred CCCc-c-cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 038113 4 NVAK-G-DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILP 50 (112)
Q Consensus 4 ~~P~-~-D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~ 50 (112)
|+|+ + |++..++++..|...+ ..+|-++-+.|+|||.++..-+-..
T Consensus 176 Pfp~~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 176 PFPSNAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cCCccchhhhhcccccccchhcc-cceeehhhhhhccCceEEecCCccc
Confidence 4565 4 9999999999999876 4699999999999999988766544
No 127
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=89.71 E-value=0.49 Score=33.12 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=26.3
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
|+|+..... +....+++++++.|+|||.+++...
T Consensus 227 DlVvan~~~-----~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 227 DVIVANILA-----EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred eEEEEecCH-----HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 999764332 2346799999999999999988664
No 128
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=89.36 E-value=0.33 Score=28.68 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=27.3
Q ss_pred cEEEeccccccCCh------HHHHHHHHHHHhhCCCCCEEEEEe
Q 038113 9 DAIYMKWILHDWSD------EHCLKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 9 D~v~~~~vlh~~~d------~~~~~iL~~~~~aL~pgg~l~i~e 46 (112)
|+|+..--.+.... +....+++++.+.|+|||.++++-
T Consensus 72 D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 72 DLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp EEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 89988766654321 124689999999999999998864
No 129
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=88.65 E-value=3.2 Score=28.77 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCeeEEEEeC--
Q 038113 25 CLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFESFI-- 102 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-- 102 (112)
-..+++.+.+.|+|||++.++-. .. ...|+.+++.+.+|...++..+.
T Consensus 149 le~~i~~a~~~lk~~G~l~~V~r---~e---------------------------rl~ei~~~l~~~~~~~k~i~~V~p~ 198 (248)
T COG4123 149 LEDLIRAAAKLLKPGGRLAFVHR---PE---------------------------RLAEIIELLKSYNLEPKRIQFVYPK 198 (248)
T ss_pred HHHHHHHHHHHccCCCEEEEEec---HH---------------------------HHHHHHHHHHhcCCCceEEEEecCC
Confidence 46799999999999999988642 11 14477888888888888776653
Q ss_pred ----CceEEEEEEC
Q 038113 103 ----CNLWVMEFYK 112 (112)
Q Consensus 103 ----~~~~vie~~~ 112 (112)
...-++|++|
T Consensus 199 ~~k~A~~vLv~~~k 212 (248)
T COG4123 199 IGKAANRVLVEAIK 212 (248)
T ss_pred CCCcceEEEEEEec
Confidence 3566777764
No 130
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=88.19 E-value=0.94 Score=30.35 Aligned_cols=43 Identities=12% Similarity=0.256 Sum_probs=25.7
Q ss_pred cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 038113 7 KGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKL 52 (112)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~ 52 (112)
+||+|++.|.+ ++++-..+| ++....|++|.+++-.....+..
T Consensus 122 ~AdvVf~Nn~~--F~~~l~~~L-~~~~~~lk~G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 122 DADVVFVNNTC--FDPDLNLAL-AELLLELKPGARIISTKPFCPRR 164 (205)
T ss_dssp C-SEEEE--TT--T-HHHHHHH-HHHHTTS-TT-EEEESS-SS-TT
T ss_pred CCCEEEEeccc--cCHHHHHHH-HHHHhcCCCCCEEEECCCcCCCC
Confidence 47999999986 666544444 67778899999998777666654
No 131
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=88.18 E-value=1.2 Score=31.67 Aligned_cols=20 Identities=10% Similarity=0.453 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhCCCCCEEEE
Q 038113 25 CLKLFKKCYKSIPKDGMVII 44 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i 44 (112)
...+++++.+.|+|||++++
T Consensus 242 ~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 242 VRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred HHHHHHHHHHhcCCCCEEEE
Confidence 46899999999999999876
No 132
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=88.13 E-value=1.4 Score=25.96 Aligned_cols=40 Identities=8% Similarity=0.213 Sum_probs=30.8
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPK 51 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~ 51 (112)
|++ .....+++.+ ....++++.+.++|+|.+++.+.....
T Consensus 121 d~~-~~~~~~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 121 DLV-ISLLVLHLLP--PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred eEE-eeeeehhcCC--HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 888 5554444444 578999999999999999998876554
No 133
>PRK00811 spermidine synthase; Provisional
Probab=87.32 E-value=1.4 Score=30.80 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=25.3
Q ss_pred cEEEeccccccCChHH--HHHHHHHHHhhCCCCCEEEEE
Q 038113 9 DAIYMKWILHDWSDEH--CLKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~--~~~iL~~~~~aL~pgg~l~i~ 45 (112)
|+|++-..-+.-+... ..++++.|++.|+|||.+++.
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 152 DVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred cEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9988744322222211 367899999999999998764
No 134
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=87.29 E-value=0.97 Score=32.20 Aligned_cols=30 Identities=10% Similarity=-0.006 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 038113 23 EHCLKLFKKCYKSIPKDGMVIIVETILPKL 52 (112)
Q Consensus 23 ~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~ 52 (112)
++..+.|+.+.+.|+|||+|+|+-+..-++
T Consensus 217 ~~L~~~L~~~~~~L~~gGrl~VISfHSLED 246 (305)
T TIGR00006 217 EELEEALQFAPNLLAPGGRLSIISFHSLED 246 (305)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence 346789999999999999999998866544
No 135
>PRK07402 precorrin-6B methylase; Provisional
Probab=87.16 E-value=0.95 Score=29.63 Aligned_cols=23 Identities=4% Similarity=0.288 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhCCCCCEEEEEee
Q 038113 25 CLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
...+++++.+.|+|||++++...
T Consensus 121 ~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 121 IKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HHHHHHHHHHhcCCCeEEEEEee
Confidence 56899999999999999998864
No 136
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=87.11 E-value=1.9 Score=30.75 Aligned_cols=22 Identities=5% Similarity=0.202 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhCCCCCEEEEEe
Q 038113 25 CLKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~e 46 (112)
..++|+++++.|+|||+++++-
T Consensus 273 ~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 273 YERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred HHHHHHHHHHHccCCcEEEEEE
Confidence 5789999999999999998864
No 137
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=86.95 E-value=0.77 Score=33.51 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=38.3
Q ss_pred CCCcc--cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 038113 4 NVAKG--DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPK 51 (112)
Q Consensus 4 ~~P~~--D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~ 51 (112)
|.++. |.+.+--+..+.++. .++++++++.++|||..++.|.+.-.
T Consensus 173 ~fedn~fd~v~~ld~~~~~~~~--~~~y~Ei~rv~kpGG~~i~~e~i~~~ 220 (364)
T KOG1269|consen 173 PFEDNTFDGVRFLEVVCHAPDL--EKVYAEIYRVLKPGGLFIVKEWIKTA 220 (364)
T ss_pred CCCccccCcEEEEeecccCCcH--HHHHHHHhcccCCCceEEeHHHHHhh
Confidence 44543 999888888888884 68999999999999999999987644
No 138
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=86.93 E-value=1 Score=29.81 Aligned_cols=30 Identities=10% Similarity=0.173 Sum_probs=23.3
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e 46 (112)
|++++...++++ .+.+.+.|+|||++++.-
T Consensus 146 D~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 146 DRILVTAAAPEI--------PRALLEQLKEGGILVAPV 175 (212)
T ss_pred CEEEEccCchhh--------hHHHHHhcCCCcEEEEEE
Confidence 999988766544 345678999999998854
No 139
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=86.91 E-value=2 Score=30.58 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=33.8
Q ss_pred CCCCCcc-cEEEeccccccCC---hHHHHHHHHHHHhhCCCCCEEEEEee
Q 038113 2 FQNVAKG-DAIYMKWILHDWS---DEHCLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 2 f~~~P~~-D~v~~~~vlh~~~---d~~~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
|+++.+- |+|++.==+|.=- +.-+.+|++.+++.|++||.|.|+-.
T Consensus 218 ~~~v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 218 YEPVEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cccccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 3444443 8887777777532 33366999999999999999999765
No 140
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=86.86 E-value=0.88 Score=29.86 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=18.6
Q ss_pred HHHHHHHHhhCCCCCEEEEEe
Q 038113 26 LKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~e 46 (112)
..+++++++.|+|||.+++..
T Consensus 112 ~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 112 PHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred HHHHHHHHHHhCCCCEEEEEe
Confidence 469999999999999998764
No 141
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=86.84 E-value=0.75 Score=32.76 Aligned_cols=30 Identities=7% Similarity=0.045 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 038113 23 EHCLKLFKKCYKSIPKDGMVIIVETILPKL 52 (112)
Q Consensus 23 ~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~ 52 (112)
++..+.|..+.+.|+|||||+|+-+..-++
T Consensus 221 ~~L~~~L~~a~~~L~~gGRl~VIsFHSLED 250 (314)
T COG0275 221 EELEEALEAALDLLKPGGRLAVISFHSLED 250 (314)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEecchHH
Confidence 457889999999999999999998866544
No 142
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=86.49 E-value=1.9 Score=26.55 Aligned_cols=33 Identities=12% Similarity=0.006 Sum_probs=26.2
Q ss_pred CceecCHHHHHHHHHhcCCCeeEEEEeCC-ceEE
Q 038113 75 GGKERTKHELMTLVTGAGFGGIRFESFIC-NLWV 107 (112)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~v 107 (112)
.+..+|.++.++++++|||++++.+.-.. .+++
T Consensus 92 ~S~Ky~~~~~~~l~~~aGl~~~~~w~d~~~~f~l 125 (127)
T PF10017_consen 92 NSYKYSPEEFEALAEQAGLEVEKRWTDPKGDFSL 125 (127)
T ss_pred EeeCcCHHHHHHHHHHCCCeeEEEEECCCCCeEE
Confidence 44667999999999999999998887643 3443
No 143
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=86.49 E-value=1 Score=30.05 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=22.1
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~ 45 (112)
|++++....++. .+.+.+.|+|||++++.
T Consensus 148 D~Ii~~~~~~~~--------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 148 DRIYVTAAGPKI--------PEALIDQLKEGGILVMP 176 (215)
T ss_pred CEEEEcCCcccc--------cHHHHHhcCcCcEEEEE
Confidence 999887665444 44577889999999874
No 144
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=86.14 E-value=5.2 Score=23.69 Aligned_cols=77 Identities=18% Similarity=0.233 Sum_probs=46.8
Q ss_pred ccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCc------eecCHHHHHHHHH
Q 038113 16 ILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGG------KERTKHELMTLVT 89 (112)
Q Consensus 16 vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~rt~~e~~~ll~ 89 (112)
+|=|++.++..++|+++... . .+++++ ++.|.++- . .....+.- .++++ ....++++.+.++
T Consensus 4 vLIHYp~~d~~~~l~~La~~-t-~~~~if--TfAP~T~~---L---~~m~~iG~--lFP~~dRsp~i~~~~e~~l~~~l~ 71 (97)
T PF07109_consen 4 VLIHYPAEDAAQMLAHLASR-T-RGSLIF--TFAPRTPL---L---ALMHAIGK--LFPRPDRSPRIYPHREEDLRRALA 71 (97)
T ss_pred eEeccCHHHHHHHHHHHHHh-c-cCcEEE--EECCCCHH---H---HHHHHHhc--cCCCCCCCCcEEEeCHHHHHHHHH
Confidence 45578999999999998764 3 345544 24444421 1 11111110 12222 2337889999999
Q ss_pred hcCCCeeEEEEeCCc
Q 038113 90 GAGFGGIRFESFICN 104 (112)
Q Consensus 90 ~aGf~~~~~~~~~~~ 104 (112)
++||++.+...+..+
T Consensus 72 ~~g~~~~r~~ris~g 86 (97)
T PF07109_consen 72 AAGWRIGRTERISSG 86 (97)
T ss_pred hCCCeeeecccccCc
Confidence 999999988877543
No 145
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=85.99 E-value=1.7 Score=32.06 Aligned_cols=44 Identities=7% Similarity=0.320 Sum_probs=29.9
Q ss_pred CCCCcc--cEEEeccccccCChHH-----HHHHHHHHHhhCCCCCEEEEEee
Q 038113 3 QNVAKG--DAIYMKWILHDWSDEH-----CLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 3 ~~~P~~--D~v~~~~vlh~~~d~~-----~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
+.+|++ |.|++..- --|+... ...+|+.+++.|+|||.+.+..-
T Consensus 186 ~~~~~~s~D~I~lnFP-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 186 ELLPSNSVEKIFVHFP-VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred hhCCCCceeEEEEeCC-CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 445654 88876433 2344322 14789999999999999988653
No 146
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=85.54 E-value=1.4 Score=31.31 Aligned_cols=30 Identities=7% Similarity=0.061 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 038113 23 EHCLKLFKKCYKSIPKDGMVIIVETILPKL 52 (112)
Q Consensus 23 ~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~ 52 (112)
++....|..+.+.|+|||+++|+-+..-++
T Consensus 213 ~~L~~~L~~~~~~L~~gGrl~visfHSlED 242 (296)
T PRK00050 213 EELERALEAALDLLKPGGRLAVISFHSLED 242 (296)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence 446789999999999999999998866554
No 147
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=85.19 E-value=0.95 Score=34.33 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=36.7
Q ss_pred CCCCCcc-cEEEeccccccCChH-HHHHHHHHHHhhCCCCCEEEEEee
Q 038113 2 FQNVAKG-DAIYMKWILHDWSDE-HCLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 2 f~~~P~~-D~v~~~~vlh~~~d~-~~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
|...|-- |++...+++-.+.+. +...||-++-+.|+|||.++|-|.
T Consensus 421 fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 421 FSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred cCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 4445654 999999998887753 367899999999999999988664
No 148
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=84.79 E-value=3.1 Score=28.99 Aligned_cols=21 Identities=5% Similarity=0.165 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhCCCCCEEEE
Q 038113 24 HCLKLFKKCYKSIPKDGMVII 44 (112)
Q Consensus 24 ~~~~iL~~~~~aL~pgg~l~i 44 (112)
...++++++.+.|+|||.+++
T Consensus 222 ~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 222 ILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred HHHHHHHHHHHhccCCCEEEE
Confidence 467899999999999998754
No 149
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=84.36 E-value=1 Score=31.12 Aligned_cols=36 Identities=22% Similarity=0.428 Sum_probs=28.8
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCC-EEEEEee
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDG-MVIIVET 47 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg-~l~i~e~ 47 (112)
|+|....++|-++- .+..+.+++.|++.| .+++.-.
T Consensus 102 DlI~~Aqa~HWFdl---e~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 102 DLITAAQAVHWFDL---ERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred eeehhhhhHHhhch---HHHHHHHHHHcCCCCCEEEEEEc
Confidence 99999999997766 478999999999866 5555443
No 150
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=84.26 E-value=1.8 Score=30.45 Aligned_cols=36 Identities=8% Similarity=0.250 Sum_probs=24.3
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~ 45 (112)
|+|++.... ..+.++..+||.++.+.|+||++|++=
T Consensus 194 DvV~lAalV-g~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 194 DVVFLAALV-GMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp SEEEE-TT--S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred CEEEEhhhc-ccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 888777654 445566899999999999999988763
No 151
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=84.20 E-value=12 Score=26.82 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=45.9
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLV 88 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 88 (112)
|+| +.|+|- +-..++...+.+.++|||++++.-...+ -.+...+-+
T Consensus 231 DvI-VANILA----~vl~~La~~~~~~lkpgg~lIlSGIl~~-----------------------------q~~~V~~a~ 276 (300)
T COG2264 231 DVI-VANILA----EVLVELAPDIKRLLKPGGRLILSGILED-----------------------------QAESVAEAY 276 (300)
T ss_pred cEE-EehhhH----HHHHHHHHHHHHHcCCCceEEEEeehHh-----------------------------HHHHHHHHH
Confidence 777 456652 2256899999999999999988653221 144667778
Q ss_pred HhcCCCeeEEEEeCCceEEE
Q 038113 89 TGAGFGGIRFESFICNLWVM 108 (112)
Q Consensus 89 ~~aGf~~~~~~~~~~~~~vi 108 (112)
+++||.++++.....-.+++
T Consensus 277 ~~~gf~v~~~~~~~eW~~i~ 296 (300)
T COG2264 277 EQAGFEVVEVLEREEWVAIV 296 (300)
T ss_pred HhCCCeEeEEEecCCEEEEE
Confidence 88899999887765544443
No 152
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=82.90 E-value=5.1 Score=28.43 Aligned_cols=67 Identities=15% Similarity=0.099 Sum_probs=45.3
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLV 88 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll 88 (112)
|+|+ .|++ .+-...+...+.+.|+|||.+++.-....+ .+++.+.+
T Consensus 227 dlvv-ANI~----~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~-----------------------------~~~v~~a~ 272 (295)
T PF06325_consen 227 DLVV-ANIL----ADVLLELAPDIASLLKPGGYLILSGILEEQ-----------------------------EDEVIEAY 272 (295)
T ss_dssp EEEE-EES-----HHHHHHHHHHCHHHEEEEEEEEEEEEEGGG-----------------------------HHHHHHHH
T ss_pred CEEE-ECCC----HHHHHHHHHHHHHhhCCCCEEEEccccHHH-----------------------------HHHHHHHH
Confidence 8775 4444 233577888899999999999886543321 33556667
Q ss_pred HhcCCCeeEEEEeCCceEEEEE
Q 038113 89 TGAGFGGIRFESFICNLWVMEF 110 (112)
Q Consensus 89 ~~aGf~~~~~~~~~~~~~vie~ 110 (112)
++ ||+..+....+.-.+++--
T Consensus 273 ~~-g~~~~~~~~~~~W~~l~~~ 293 (295)
T PF06325_consen 273 KQ-GFELVEEREEGEWVALVFK 293 (295)
T ss_dssp HT-TEEEEEEEEETTEEEEEEE
T ss_pred HC-CCEEEEEEEECCEEEEEEE
Confidence 66 9999888877666665443
No 153
>PLN02366 spermidine synthase
Probab=82.17 E-value=3.4 Score=29.43 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=24.6
Q ss_pred cEEEeccccccCChHH--HHHHHHHHHhhCCCCCEEEEE
Q 038113 9 DAIYMKWILHDWSDEH--CLKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~--~~~iL~~~~~aL~pgg~l~i~ 45 (112)
|+|++-..-+.-+... ..++++.++++|+|||.+++.
T Consensus 167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 167 DAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred CEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 8887643222111111 357899999999999998664
No 154
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=81.96 E-value=1.7 Score=32.30 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=22.4
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecCC
Q 038113 26 LKLFKKCYKSIPKDGMVIIVETILPK 51 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~e~~~~~ 51 (112)
.++|+++.+.|+|||+|+...+.+..
T Consensus 364 ~~iL~~a~~~lkpgG~lvystcsi~~ 389 (434)
T PRK14901 364 AELLESLAPLLKPGGTLVYATCTLHP 389 (434)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 68999999999999999988866543
No 155
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=81.54 E-value=16 Score=27.43 Aligned_cols=56 Identities=13% Similarity=0.059 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCeeEEEEe-CC
Q 038113 25 CLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFESF-IC 103 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~-~~ 103 (112)
-.++++.+.+.|+|||.+++ |. +.+ ..+++.+++++.||+.+++..- .+
T Consensus 360 yr~Ii~~a~~~LkpgG~lil-Ei--G~~---------------------------Q~e~V~~ll~~~Gf~~v~v~kDl~G 409 (423)
T PRK14966 360 IRTLAQGAPDRLAEGGFLLL-EH--GFD---------------------------QGAAVRGVLAENGFSGVETLPDLAG 409 (423)
T ss_pred HHHHHHHHHHhcCCCcEEEE-EE--Ccc---------------------------HHHHHHHHHHHCCCcEEEEEEcCCC
Confidence 34677777788999988653 32 111 1446788888899988776654 44
Q ss_pred ceEEEEE
Q 038113 104 NLWVMEF 110 (112)
Q Consensus 104 ~~~vie~ 110 (112)
...++.+
T Consensus 410 ~dR~v~~ 416 (423)
T PRK14966 410 LDRVTLG 416 (423)
T ss_pred CcEEEEE
Confidence 4444444
No 156
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=81.14 E-value=3 Score=27.13 Aligned_cols=58 Identities=7% Similarity=0.259 Sum_probs=37.3
Q ss_pred cccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCee
Q 038113 17 LHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGI 96 (112)
Q Consensus 17 lh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 96 (112)
-.+|......++.+++.+.++||+.+++++. +..... ......+...|++.||+.+
T Consensus 130 ~~D~~~~~~~~i~~~~~~~~~~g~Iil~Hd~---~~~~~t---------------------~~~l~~~i~~l~~~Gy~~v 185 (191)
T TIGR02764 130 SRDWKNPGVESIVDRVVKNTKPGDIILLHAS---DSAKQT---------------------VKALPTIIKKLKEKGYEFV 185 (191)
T ss_pred CCccCCCCHHHHHHHHHhcCCCCCEEEEeCC---CCcHhH---------------------HHHHHHHHHHHHHCCCEEE
Confidence 3466655567888999999999887777761 111000 0124467778888898877
Q ss_pred EE
Q 038113 97 RF 98 (112)
Q Consensus 97 ~~ 98 (112)
.+
T Consensus 186 tl 187 (191)
T TIGR02764 186 TI 187 (191)
T ss_pred EH
Confidence 64
No 157
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=80.69 E-value=14 Score=27.07 Aligned_cols=20 Identities=15% Similarity=0.222 Sum_probs=17.2
Q ss_pred CHHHHHHHHHhcCCCeeEEE
Q 038113 80 TKHELMTLVTGAGFGGIRFE 99 (112)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~ 99 (112)
+.+.|++.++.+||+.+.+.
T Consensus 311 ~~~~W~~r~~~aGF~~~~ls 330 (374)
T PF03514_consen 311 RLEQWRRRMRRAGFRPVPLS 330 (374)
T ss_pred chhHHHHHHHhcCCeecCCC
Confidence 66899999999999987654
No 158
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=80.64 E-value=1 Score=32.17 Aligned_cols=30 Identities=7% Similarity=0.035 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 038113 23 EHCLKLFKKCYKSIPKDGMVIIVETILPKL 52 (112)
Q Consensus 23 ~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~ 52 (112)
++....|.++.+.|+|||+++|+-+..-++
T Consensus 218 ~~L~~~L~~a~~~L~~gGrl~VISFHSLED 247 (310)
T PF01795_consen 218 EELERGLEAAPDLLKPGGRLVVISFHSLED 247 (310)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecchhh
Confidence 457889999999999999999998755433
No 159
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=80.51 E-value=7.2 Score=28.69 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=32.6
Q ss_pred CCCCcc-cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 038113 3 QNVAKG-DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILP 50 (112)
Q Consensus 3 ~~~P~~-D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~ 50 (112)
+++|++ |+|++..-= +.+.....|..+++.|+||+.+++.+....
T Consensus 101 ~~~~~~~d~vl~~~PK---~~~~l~~~l~~l~~~l~~~~~ii~g~~~k~ 146 (378)
T PRK15001 101 ADYPQQPGVVLIKVPK---TLALLEQQLRALRKVVTSDTRIIAGAKARD 146 (378)
T ss_pred ccccCCCCEEEEEeCC---CHHHHHHHHHHHHhhCCCCCEEEEEEecCC
Confidence 345655 887765421 235688999999999999999887776544
No 160
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=80.30 E-value=3.5 Score=26.60 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=29.1
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETIL 49 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~ 49 (112)
.|+|+.+-++++ ++....+++-+.+.|+|+|.+++.....
T Consensus 120 ~D~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 120 FDVILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp BSEEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred CCEEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 399999999975 4557889999999999999977776544
No 161
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=80.20 E-value=6.6 Score=25.67 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=32.7
Q ss_pred HHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCeeEEEEe
Q 038113 28 LFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 28 iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (112)
.+.-..+++++|-+++|+|-+.... | |.....++++++|.+++.+..+
T Consensus 105 ~l~~~~~~l~~G~rVlIVDDllaTG-----------------------g---T~~a~~~Ll~~~ga~vvg~~~~ 152 (179)
T COG0503 105 TLELHKDALKPGDRVLIVDDLLATG-----------------------G---TALALIELLEQAGAEVVGAAFV 152 (179)
T ss_pred EEEEEhhhCCCCCEEEEEecchhcC-----------------------h---HHHHHHHHHHHCCCEEEEEEEE
Confidence 3444456777888888887665432 2 5667788999999888876543
No 162
>PHA03411 putative methyltransferase; Provisional
Probab=80.04 E-value=12 Score=26.46 Aligned_cols=64 Identities=9% Similarity=-0.001 Sum_probs=39.7
Q ss_pred cEEEeccccccCChHHH------------------HHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhh
Q 038113 9 DAIYMKWILHDWSDEHC------------------LKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMM 70 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~------------------~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~ 70 (112)
|+|+..--+++.+.++. .+.++.....|+|+|.+.++ ....+ . +
T Consensus 128 DlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~---yss~~---~-------y----- 189 (279)
T PHA03411 128 DVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA---YSGRP---Y-------Y----- 189 (279)
T ss_pred cEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE---Eeccc---c-------c-----
Confidence 99988776666554322 24555566677788866665 11111 0 0
Q ss_pred hcCCCceecCHHHHHHHHHhcCCCe
Q 038113 71 TQNPGGKERTKHELMTLVTGAGFGG 95 (112)
Q Consensus 71 ~~~~~g~~rt~~e~~~ll~~aGf~~ 95 (112)
+ ...+.+||+++|+++||..
T Consensus 190 ----~-~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 190 ----D-GTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred ----c-ccCCHHHHHHHHHhcCcEe
Confidence 0 1136889999999999875
No 163
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=79.55 E-value=2.4 Score=31.41 Aligned_cols=26 Identities=4% Similarity=0.170 Sum_probs=22.2
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecCC
Q 038113 26 LKLFKKCYKSIPKDGMVIIVETILPK 51 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~e~~~~~ 51 (112)
.++|+++.+.|+|||++++..+....
T Consensus 352 ~~iL~~a~~~LkpGG~lvystcs~~~ 377 (427)
T PRK10901 352 SEILDALWPLLKPGGTLLYATCSILP 377 (427)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 47999999999999999998865543
No 164
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=78.94 E-value=6.1 Score=26.84 Aligned_cols=34 Identities=15% Similarity=0.305 Sum_probs=24.4
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
|++++ +-+.+.-...+..+.+.|+|||.+++-+.
T Consensus 146 D~Vfi-----Da~k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 146 DFAFV-----DADKPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred CEEEE-----CCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 88866 33334456889999999999997665443
No 165
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=78.79 E-value=2.4 Score=31.57 Aligned_cols=27 Identities=7% Similarity=0.176 Sum_probs=22.8
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecCCC
Q 038113 26 LKLFKKCYKSIPKDGMVIIVETILPKL 52 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~e~~~~~~ 52 (112)
.++|+++.+.|+|||+++...+.....
T Consensus 357 ~~iL~~a~~~lkpgG~lvystcs~~~~ 383 (445)
T PRK14904 357 AELLDHAASLLKPGGVLVYATCSIEPE 383 (445)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence 469999999999999999988766533
No 166
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=78.72 E-value=2.7 Score=29.07 Aligned_cols=26 Identities=12% Similarity=0.328 Sum_probs=21.4
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecCC
Q 038113 26 LKLFKKCYKSIPKDGMVIIVETILPK 51 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~e~~~~~ 51 (112)
.++|+++.+.|+|||+|+........
T Consensus 179 ~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 179 KELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 56999999999999999877665543
No 167
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=78.62 E-value=18 Score=27.59 Aligned_cols=47 Identities=9% Similarity=0.111 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCeeEEEEe
Q 038113 25 CLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (112)
-.++++++.+.|+|||.+++ |. +.. ..++..+++++.||..+++..-
T Consensus 248 ~~~il~~a~~~L~~gG~l~l-Ei--g~~---------------------------q~~~v~~~~~~~g~~~~~~~~D 294 (506)
T PRK01544 248 YFIIAENAKQFLKPNGKIIL-EI--GFK---------------------------QEEAVTQIFLDHGYNIESVYKD 294 (506)
T ss_pred HHHHHHHHHHhccCCCEEEE-EE--CCc---------------------------hHHHHHHHHHhcCCCceEEEec
Confidence 45688899999999999865 42 111 1335677777788887766543
No 168
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=78.10 E-value=4.2 Score=30.78 Aligned_cols=40 Identities=15% Similarity=0.051 Sum_probs=31.2
Q ss_pred cEEEeccccccCChHH-H-HHHHHHHHhhCCCCCEEEEEeee
Q 038113 9 DAIYMKWILHDWSDEH-C-LKLFKKCYKSIPKDGMVIIVETI 48 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~-~-~~iL~~~~~aL~pgg~l~i~e~~ 48 (112)
|+++.++.||...... . ...-+.++.+.++|+.++|+|.-
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence 9999999999988543 2 33445566788899999999973
No 169
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=77.75 E-value=2.1 Score=22.76 Aligned_cols=16 Identities=19% Similarity=0.011 Sum_probs=11.5
Q ss_pred HHHHhcCCCeeEEEEe
Q 038113 86 TLVTGAGFGGIRFESF 101 (112)
Q Consensus 86 ~ll~~aGf~~~~~~~~ 101 (112)
+||++|||..-+-..+
T Consensus 31 ~WL~~aGF~~G~~v~V 46 (57)
T PF08845_consen 31 KWLEEAGFTIGDPVKV 46 (57)
T ss_pred hhhHHhCCCCCCEEEE
Confidence 6889999986554443
No 170
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=77.40 E-value=10 Score=25.06 Aligned_cols=41 Identities=10% Similarity=0.139 Sum_probs=36.8
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETI 48 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~ 48 (112)
-|.++..--+-+++-....+||+.+...|++||.++-...-
T Consensus 118 ~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 118 FDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 39999998888999999999999999999999999887764
No 171
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=75.79 E-value=3.5 Score=30.69 Aligned_cols=27 Identities=19% Similarity=0.441 Sum_probs=22.4
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecCCC
Q 038113 26 LKLFKKCYKSIPKDGMVIIVETILPKL 52 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~e~~~~~~ 52 (112)
.++|.++.+.|+|||.|+...+.....
T Consensus 346 ~~iL~~a~~~LkpGG~LvYsTCs~~~e 372 (431)
T PRK14903 346 LRIVSQAWKLLEKGGILLYSTCTVTKE 372 (431)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCChh
Confidence 678999999999999998877765543
No 172
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=75.78 E-value=11 Score=27.35 Aligned_cols=37 Identities=11% Similarity=0.218 Sum_probs=29.4
Q ss_pred cEEEeccccccCC--hHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 038113 9 DAIYMKWILHDWS--DEHCLKLFKKCYKSIPKDGMVIIVETILP 50 (112)
Q Consensus 9 D~v~~~~vlh~~~--d~~~~~iL~~~~~aL~pgg~l~i~e~~~~ 50 (112)
|.+++. || .+++..+|.++.+.|+|||.|+++-...+
T Consensus 78 d~~~~~-----~pk~k~~~~~~l~~~~~~l~~g~~i~~~G~~~~ 116 (342)
T PRK09489 78 DTLIYY-----WPKNKQEAQFQLMNLLSLLPVGTDIFVVGENRS 116 (342)
T ss_pred CEEEEE-----CCCCHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Confidence 766554 55 36688999999999999999999876554
No 173
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=75.68 E-value=3.4 Score=28.74 Aligned_cols=31 Identities=13% Similarity=0.340 Sum_probs=25.3
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 038113 18 HDWSDEHCLKLFKKCYKSIPKDGMVIIVETILP 50 (112)
Q Consensus 18 h~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~ 50 (112)
-|++|+ -..|.++.++|+|||.+++.-+..+
T Consensus 169 LDmp~P--W~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 169 LDLPDP--WNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred EcCCCh--HHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 477774 6899999999999999998765554
No 174
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=73.93 E-value=7.5 Score=26.27 Aligned_cols=36 Identities=11% Similarity=0.140 Sum_probs=27.0
Q ss_pred CCCc-c--cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 038113 4 NVAK-G--DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 4 ~~P~-~--D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
.+|+ + |.+++....-..|+ .+.+.|+|||++++-..
T Consensus 132 G~~~~aPyD~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 132 GWPEEAPYDRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCCCCcCEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 3454 4 99999988877766 24567999999999765
No 175
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=73.58 E-value=6.3 Score=25.75 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=21.1
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecC
Q 038113 26 LKLFKKCYKSIPKDGMVIIVETILP 50 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~e~~~~ 50 (112)
.+-+.++++.|||||.|++.=++-.
T Consensus 91 l~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 91 LRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred HHHHHHHHHhhccCCeEEEEeecCC
Confidence 5677889999999999999877654
No 176
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.32 E-value=6.8 Score=22.05 Aligned_cols=37 Identities=22% Similarity=0.461 Sum_probs=24.4
Q ss_pred CCCCCcc-cEEEecccccc--CChHHHHHHHHHHHhhCCCCC
Q 038113 2 FQNVAKG-DAIYMKWILHD--WSDEHCLKLFKKCYKSIPKDG 40 (112)
Q Consensus 2 f~~~P~~-D~v~~~~vlh~--~~d~~~~~iL~~~~~aL~pgg 40 (112)
||..|.| |- ++-++++ +.++...++++++.+.|.|+-
T Consensus 32 ~Eh~PSGID~--~Siii~~~~~~~~~~~~i~~~i~~~~~pD~ 71 (76)
T cd04911 32 YEHMPSGIDD--ISIIIRDNQLTDEKEQKILAEIKEELHPDE 71 (76)
T ss_pred EeeecCCCcc--EEEEEEccccchhhHHHHHHHHHHhcCCCE
Confidence 4567876 54 2233333 445456889999999999974
No 177
>PRK03612 spermidine synthase; Provisional
Probab=72.95 E-value=7.3 Score=29.78 Aligned_cols=37 Identities=11% Similarity=0.249 Sum_probs=24.3
Q ss_pred cEEEeccccccCChHH---HHHHHHHHHhhCCCCCEEEEE
Q 038113 9 DAIYMKWILHDWSDEH---CLKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~---~~~iL~~~~~aL~pgg~l~i~ 45 (112)
|+|++...-..-+... ..++++++++.|+|||.+++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 8887753322111110 246899999999999998775
No 178
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=72.61 E-value=5.5 Score=27.92 Aligned_cols=20 Identities=5% Similarity=0.438 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhCCCCCEEEE
Q 038113 25 CLKLFKKCYKSIPKDGMVII 44 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i 44 (112)
...+++++.+.|+|||++++
T Consensus 230 ~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 230 VRRILAEAADHLNENGVLVV 249 (284)
T ss_pred HHHHHHHHHHhcCCCCEEEE
Confidence 47889999999999998864
No 179
>PF03574 Peptidase_S48: Peptidase family S48; InterPro: IPR005319 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases, which includes HetR, are associated with heterocystous cyanobacteria and belong to MEROPS peptidase family S48 (clan S-). HetR is a DNA-binding serine-type protease required for heterocyst differentiation in heterocystous cyanobacteria under conditions of nitrogen deprivation. Mutation of HetR from of Anabaena sp. (strain PCC 7120) by site-specific mutagenesis of Ser-152 showed that this residue was one of the peptidase active site residues. It was suggested that peptidase activity might be needed for repression of HetR overproduction under conditions of nitrogen deprivation []. Modification of Cys-48 prevented disulphide-bond formation and homodimerisation of HetR and DNA-binding. The homodimer of HetR binds the promoter regions of hetR, hepA, and patS, suggesting a direct control of the expression of these genes by HetR. The pentapeptide RGSGR, which is present at the C terminus of PatS, blocks heterocyst formation, inhibits the DNA binding of HetR and prevents hetR up-regulation [].; GO: 0003677 DNA binding, 0004252 serine-type endopeptidase activity, 0043158 heterocyst differentiation; PDB: 3QOE_A 3QOD_A.
Probab=72.45 E-value=3.1 Score=25.72 Aligned_cols=29 Identities=7% Similarity=0.135 Sum_probs=20.8
Q ss_pred cccccCChHHHHHHHHHHHhhCCCCCEEE
Q 038113 15 WILHDWSDEHCLKLFKKCYKSIPKDGMVI 43 (112)
Q Consensus 15 ~vlh~~~d~~~~~iL~~~~~aL~pgg~l~ 43 (112)
.-||++.......|.++++++|..|..|=
T Consensus 12 GHLHHiEPKRVKvIVeEv~qaltegklLk 40 (149)
T PF03574_consen 12 GHLHHIEPKRVKVIVEEVRQALTEGKLLK 40 (149)
T ss_dssp HHHTT--HHHHHHHHHHHHHHHSSS----
T ss_pred ccccccCchhhhhHHHHHHHHHhhhhHHH
Confidence 45899999989999999999999997763
No 180
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=72.19 E-value=14 Score=26.37 Aligned_cols=37 Identities=16% Similarity=0.354 Sum_probs=28.2
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETI 48 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~ 48 (112)
|++++.+-= +..+++..|.++.+.++|||.|+++-..
T Consensus 39 d~~l~~~pK---~~~e~e~qLa~ll~~~~~g~~i~v~g~~ 75 (300)
T COG2813 39 DAVLLYWPK---HKAEAEFQLAQLLARLPPGGEIVVVGEK 75 (300)
T ss_pred CEEEEEccC---chHHHHHHHHHHHhhCCCCCeEEEEecc
Confidence 776654332 2366889999999999999999997653
No 181
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=72.00 E-value=4.9 Score=29.94 Aligned_cols=25 Identities=12% Similarity=0.369 Sum_probs=20.6
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecC
Q 038113 26 LKLFKKCYKSIPKDGMVIIVETILP 50 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~e~~~~ 50 (112)
.++|+++.+.|+|||+++.......
T Consensus 359 ~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 359 LEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred HHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 4689999999999999987665443
No 182
>PRK11524 putative methyltransferase; Provisional
Probab=71.97 E-value=5.5 Score=27.85 Aligned_cols=20 Identities=20% Similarity=0.551 Sum_probs=18.1
Q ss_pred HHHHHHHHhhCCCCCEEEEE
Q 038113 26 LKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~ 45 (112)
...|+.+++.|+|||.+++.
T Consensus 60 ~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 60 YEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred HHHHHHHHHHhCCCcEEEEE
Confidence 57899999999999999885
No 183
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=71.87 E-value=7.4 Score=24.92 Aligned_cols=37 Identities=14% Similarity=0.311 Sum_probs=25.8
Q ss_pred cEEEeccccccCC--hHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 038113 9 DAIYMKWILHDWS--DEHCLKLFKKCYKSIPKDGMVIIVETILP 50 (112)
Q Consensus 9 D~v~~~~vlh~~~--d~~~~~iL~~~~~aL~pgg~l~i~e~~~~ 50 (112)
|.+++ .|| .+++.-+|..+...|++||.|+|+-....
T Consensus 71 D~vvl-----y~PKaK~e~~~lL~~l~~~L~~g~~i~vVGEnk~ 109 (155)
T PF08468_consen 71 DTVVL-----YWPKAKAEAQYLLANLLSHLPPGTEIFVVGENKG 109 (155)
T ss_dssp SEEEE-----E--SSHHHHHHHHHHHHTTS-TT-EEEEEEEGGG
T ss_pred CEEEE-----EccCcHHHHHHHHHHHHHhCCCCCEEEEEecCcc
Confidence 66544 466 46799999999999999999999865443
No 184
>PRK01581 speE spermidine synthase; Validated
Probab=70.94 E-value=5.1 Score=29.48 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=18.0
Q ss_pred HHHHHHHHhhCCCCCEEEEE
Q 038113 26 LKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~ 45 (112)
.+.++.|++.|+|||.+++.
T Consensus 248 ~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 248 SELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred HHHHHHHHHhcCCCcEEEEe
Confidence 67899999999999998775
No 185
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=70.91 E-value=4.4 Score=30.67 Aligned_cols=24 Identities=13% Similarity=0.367 Sum_probs=20.1
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeec
Q 038113 26 LKLFKKCYKSIPKDGMVIIVETIL 49 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~e~~~ 49 (112)
.+||.++.+.|+|||+|+-..+..
T Consensus 222 ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 222 RELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred HHHHHHHHHHcCCCcEEEEECCCC
Confidence 789999999999999996666543
No 186
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=69.64 E-value=23 Score=23.13 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCeeEEEEe
Q 038113 25 CLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (112)
-.+++.-+++.|.|||.|++ |.+.+.... +. + ..|+.....-+--.|-++||+-.+-+..
T Consensus 72 E~~l~~~l~~~lspg~~lfV-eYv~DrET~------~~----l------qkG~~p~atrLGfeL~k~GftwfkdWY~ 131 (192)
T COG4353 72 EVKLYKVLYNFLSPGGKLFV-EYVRDRETR------YR----L------QKGKPPVATRLGFELLKAGFTWFKDWYF 131 (192)
T ss_pred HHHHHHHHHHhcCCCCceEE-EEEechhHH------HH----H------HcCCCCccchhhHHHHhCcceeeeeeec
Confidence 36888999999999999876 777664310 11 1 1222222333344455688887766544
No 187
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=69.61 E-value=9.3 Score=27.45 Aligned_cols=33 Identities=15% Similarity=0.035 Sum_probs=26.5
Q ss_pred CceecCHHHHHHHHHhcCCCeeEEEEeCC-ceEE
Q 038113 75 GGKERTKHELMTLVTGAGFGGIRFESFIC-NLWV 107 (112)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~v 107 (112)
++..+|.++++.+++++||++.+.+.-.. .+++
T Consensus 284 ~S~Kyt~~~~~~l~~~aG~~~~~~W~d~~~~f~~ 317 (319)
T TIGR03439 284 CSGKYDKDEREKLCQSAGLKVVDVWTNEDGDYGI 317 (319)
T ss_pred eeeCCCHHHHHHHHHHCCCeeeEEEECCCCceee
Confidence 45678999999999999999999887643 3443
No 188
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=69.34 E-value=12 Score=20.11 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=11.9
Q ss_pred cCCh-HHHHHHHHHHHhhCCCCCEEEEE
Q 038113 19 DWSD-EHCLKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 19 ~~~d-~~~~~iL~~~~~aL~pgg~l~i~ 45 (112)
.+++ ++..++ .+.+..||+|+|.
T Consensus 46 ~~~~~~~~~~l----~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 46 RLSEPEEAEAL----LEWVEAGNTLVLA 69 (70)
T ss_pred CCCchHHHHHH----HHHHHcCCEEEEe
Confidence 4554 444433 3333357777775
No 189
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=68.89 E-value=12 Score=23.06 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCCeeEEEEeCCceEEEEEEC
Q 038113 81 KHELMTLVTGAGFGGIRFESFICNLWVMEFYK 112 (112)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 112 (112)
...+++-|.++||.+.+....++-...+.++|
T Consensus 92 a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 92 AGAVRRALQQAGFEVEKVPGFGRKREMLRAVK 123 (124)
T ss_dssp BHHHHHHHHHCTEEEEEEE-STTSSEEEEEEC
T ss_pred hHHHHHHHHHcCCEEEEcCCCCCcchheEEEc
Confidence 45789999999999988777776666666654
No 190
>PRK13699 putative methylase; Provisional
Probab=68.71 E-value=7.1 Score=26.49 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhCCCCCEEEE
Q 038113 25 CLKLFKKCYKSIPKDGMVII 44 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i 44 (112)
....+++++++|+|||.+++
T Consensus 51 ~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEE
Confidence 56889999999999998876
No 191
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=68.16 E-value=5.4 Score=29.29 Aligned_cols=27 Identities=11% Similarity=0.336 Sum_probs=22.9
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecCCC
Q 038113 26 LKLFKKCYKSIPKDGMVIIVETILPKL 52 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~e~~~~~~ 52 (112)
..||++..+.|++||+|+-......+.
T Consensus 276 ~~iL~rgl~lLk~GG~lVYSTCSLnpi 302 (375)
T KOG2198|consen 276 LRILRRGLRLLKVGGRLVYSTCSLNPI 302 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeccCCCch
Confidence 689999999999999998887766544
No 192
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=67.52 E-value=7.7 Score=26.65 Aligned_cols=20 Identities=5% Similarity=0.115 Sum_probs=17.2
Q ss_pred HHHHHHHHhhCCCCCEEEEE
Q 038113 26 LKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~ 45 (112)
..+++.+.+.|+|||++++.
T Consensus 196 ~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 196 RRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred HHHHHHHHHhcCCCCEEEEE
Confidence 57888888999999998864
No 193
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=67.24 E-value=4.1 Score=27.89 Aligned_cols=82 Identities=20% Similarity=0.324 Sum_probs=49.8
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCC-CCEEEEEeeecCCC------CCCchhhhhhhhhchhhhhcCCCceecCH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPK-DGMVIIVETILPKL------PETRTLSKIISQGDVLMMTQNPGGKERTK 81 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p-gg~l~i~e~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~rt~ 81 (112)
|++...|+|..-.+ .-++|+-++.+|.| .|++++. .++|-. ..+.. .+ -| ..+ ..+|+.+.+
T Consensus 171 dli~clNlLDRc~~--p~kLL~Di~~vl~psngrviva-LVLP~~hYVE~N~~g~~-~r----Pd-n~L--e~~Gr~~ee 239 (288)
T KOG3987|consen 171 DLILCLNLLDRCFD--PFKLLEDIHLVLAPSNGRVIVA-LVLPYMHYVETNTSGLP-LR----PD-NLL--ENNGRSFEE 239 (288)
T ss_pred ehHHHHHHHHhhcC--hHHHHHHHHHHhccCCCcEEEE-EEecccceeecCCCCCc-CC----ch-HHH--HhcCccHHH
Confidence 88888888866555 47999999999999 7887664 233321 11100 00 00 111 125553322
Q ss_pred --HHHHHHHHhcCCCeeEEEEe
Q 038113 82 --HELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 82 --~e~~~ll~~aGf~~~~~~~~ 101 (112)
+.+.++|+.+||.+....+.
T Consensus 240 ~v~~~~e~lr~~g~~veawTrl 261 (288)
T KOG3987|consen 240 EVARFMELLRNCGYRVEAWTRL 261 (288)
T ss_pred HHHHHHHHHHhcCchhhhhhcC
Confidence 35678999999998765544
No 194
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=67.22 E-value=8 Score=24.18 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=21.2
Q ss_pred Cce-ecCHHHHHHHHHhcCCCeeEEEEeCCceEEEE
Q 038113 75 GGK-ERTKHELMTLVTGAGFGGIRFESFICNLWVME 109 (112)
Q Consensus 75 ~g~-~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie 109 (112)
+|+ .-.-++++++|+++||+.++. .+.++.-|++
T Consensus 14 GG~nki~MaeLr~~l~~~Gf~~V~T-yi~SGNvvf~ 48 (137)
T PF08002_consen 14 GGKNKIKMAELREALEDLGFTNVRT-YIQSGNVVFE 48 (137)
T ss_dssp TTBS---HHHHHHHHHHCT-EEEEE-ETTTTEEEEE
T ss_pred CCCCcccHHHHHHHHHHcCCCCceE-EEeeCCEEEe
Confidence 453 458899999999999998873 3344444443
No 195
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=66.74 E-value=3.8 Score=26.83 Aligned_cols=21 Identities=24% Similarity=0.624 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhCCCCCEEEEE
Q 038113 25 CLKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~ 45 (112)
....++++++.|+|||.++|.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCeeEEEE
Confidence 578899999999999998884
No 196
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=66.51 E-value=6 Score=20.32 Aligned_cols=17 Identities=41% Similarity=0.687 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCCCeeEE
Q 038113 82 HELMTLVTGAGFGGIRF 98 (112)
Q Consensus 82 ~e~~~ll~~aGf~~~~~ 98 (112)
.|+.++|+++||...+.
T Consensus 2 ~el~k~L~~~G~~~~r~ 18 (56)
T PF07927_consen 2 RELIKLLEKAGFEEVRQ 18 (56)
T ss_dssp HHHHHHHHHTT-EEEEE
T ss_pred hHHHHHHHHCCCEEecC
Confidence 58899999999998853
No 197
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=62.89 E-value=20 Score=25.97 Aligned_cols=38 Identities=13% Similarity=0.053 Sum_probs=33.7
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e 46 (112)
|-|++..+=.-++|.+...++.++.+.+.||.+++.-.
T Consensus 329 dr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRt 366 (414)
T COG5379 329 DRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRT 366 (414)
T ss_pred ceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEec
Confidence 99999998766788899999999999999999987753
No 198
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=62.42 E-value=8.1 Score=27.75 Aligned_cols=30 Identities=17% Similarity=0.349 Sum_probs=21.5
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e 46 (112)
|+|++...+++.+ ..+.+.|+|||++++..
T Consensus 151 D~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 151 DVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 8888875554433 34567899999998854
No 199
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=62.30 E-value=12 Score=26.92 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHhhCCCCCEEEEEee
Q 038113 22 DEHCLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 22 d~~~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
-.+-.++|.++-+.++||..|+|+|.
T Consensus 218 ~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 218 ISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred hHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 34568999999999999999999996
No 200
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=61.97 E-value=16 Score=21.07 Aligned_cols=76 Identities=12% Similarity=0.145 Sum_probs=34.0
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCC
Q 038113 18 HDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFG 94 (112)
Q Consensus 18 h~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~ 94 (112)
+..+++++.+++.-.|= +-|...+.+.---...-+..-........-.+.......-+..|+.++-.+++++.||+
T Consensus 17 ~~l~~~e~lr~ia~~Rl-~~P~a~I~la~gr~~~~~~~~~~~~~sg~n~~~~G~ylt~~g~~~~~~d~~~i~~lG~~ 92 (93)
T PF06968_consen 17 PPLSDEEFLRIIAAFRL-LLPEAGIRLAGGREALLRDLQPLTFMSGANSIMVGGYLTTSGNRSVDEDIEMIEKLGLE 92 (93)
T ss_dssp ----HHHHHHHHHHHHH-HSTTSEEEEECCHHHCSCCHHHHHHCCT--EEE-CSBTSSSCTSHHHHHHHHHHHTT-E
T ss_pred CCCCHHHHHHHHHHHHH-HCCCcceEeecCccccCHHHHHHHHhcccceeEECCccccCCCCCHHHHHHHHHHcCCC
Confidence 45688888888885544 45555665543221111110000000000000000011123347899999999999985
No 201
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=61.89 E-value=20 Score=24.15 Aligned_cols=24 Identities=21% Similarity=0.058 Sum_probs=18.5
Q ss_pred cCHHHHHHHHHhcCCCeeEEEEeC
Q 038113 79 RTKHELMTLVTGAGFGGIRFESFI 102 (112)
Q Consensus 79 rt~~e~~~ll~~aGf~~~~~~~~~ 102 (112)
.|.+|+.+-++.-||.....+|.+
T Consensus 184 ~T~dELv~~f~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 184 FTKDELVEEFENFNFEYLSTVPTP 207 (227)
T ss_pred ccHHHHHHHHhcCCeEEEEeeccc
Confidence 478888888888888887776654
No 202
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=61.62 E-value=11 Score=27.33 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=22.9
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecCCC
Q 038113 26 LKLFKKCYKSIPKDGMVIIVETILPKL 52 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~e~~~~~~ 52 (112)
.+||.++.+.|+|||.|+-..+.+...
T Consensus 268 ~~iL~~a~~~lk~GG~LVYSTCS~~~e 294 (355)
T COG0144 268 KEILAAALKLLKPGGVLVYSTCSLTPE 294 (355)
T ss_pred HHHHHHHHHhcCCCCEEEEEccCCchh
Confidence 578999999999999999888766544
No 203
>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.
Probab=61.49 E-value=5.3 Score=20.08 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=14.6
Q ss_pred CHHHHHHHHHhcCCCeeE
Q 038113 80 TKHELMTLVTGAGFGGIR 97 (112)
Q Consensus 80 t~~e~~~ll~~aGf~~~~ 97 (112)
-..+|.++|..+|.+..+
T Consensus 27 lP~eW~~ll~~sgis~~e 44 (46)
T cd01093 27 LPEEWQRLLKSSGITKEE 44 (46)
T ss_pred CCHHHHHHHHHcCCCHHH
Confidence 357999999999987654
No 204
>PF15603 Imm45: Immunity protein 45
Probab=60.99 E-value=29 Score=19.82 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=30.9
Q ss_pred ccEEEeccccccC---------ChHHHHHHHHHHHhhCCCCCEEEEEe
Q 038113 8 GDAIYMKWILHDW---------SDEHCLKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 8 ~D~v~~~~vlh~~---------~d~~~~~iL~~~~~aL~pgg~l~i~e 46 (112)
+|.++..+.+-+| ++.+..+|++.+.+.+...|..+..|
T Consensus 35 ~~Fvvy~~si~~We~P~e~~~it~~e~q~II~aI~~~~~~~~~~v~fE 82 (82)
T PF15603_consen 35 GDFVVYKDSIKNWEPPHENEPITIAERQKIIEAIEKYFSERGMTVDFE 82 (82)
T ss_pred cCEEEEccccccccCCCCCcccCHHHHHHHHHHHHHHHhcCceEEEeC
Confidence 4788888888755 45678899999999999888877654
No 205
>PLN02672 methionine S-methyltransferase
Probab=60.67 E-value=37 Score=28.70 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhCCCCCEEEEEee
Q 038113 25 CLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
.++|++.+.+.|+|||.++ +|.
T Consensus 257 yr~i~~~a~~~L~pgG~l~-lEi 278 (1082)
T PLN02672 257 IARAVEEGISVIKPMGIMI-FNM 278 (1082)
T ss_pred HHHHHHHHHHhccCCCEEE-EEE
Confidence 4778888888999999765 453
No 206
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=60.18 E-value=33 Score=24.83 Aligned_cols=85 Identities=13% Similarity=0.113 Sum_probs=53.8
Q ss_pred EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCch-hhhhhhhhchhhhhcCCCc--eecCHHHHHH
Q 038113 10 AIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRT-LSKIISQGDVLMMTQNPGG--KERTKHELMT 86 (112)
Q Consensus 10 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g--~~rt~~e~~~ 86 (112)
+++.-=+|-.++.+++..+++-+.+.. +.+..++.|++.+.++-+.- ..++ ...+..+ .| .--|.+..++
T Consensus 191 i~iaEcvLvYM~pe~S~~Li~w~~~~F-~~a~fv~YEQi~~~D~Fg~vM~~nl-k~r~~~L-----~gle~y~s~Esq~~ 263 (335)
T KOG2918|consen 191 IFIAECVLVYMEPEESANLIKWAASKF-ENAHFVNYEQINPNDRFGKVMLANL-KRRGCPL-----HGLETYNSIESQRS 263 (335)
T ss_pred eehhhhhheeccHHHHHHHHHHHHHhC-CcccEEEEeccCCCChHHHHHHHHH-HhcCCCC-----chhhhcccHHHHHH
Confidence 444445777888898989999888755 56678888998866543210 0000 0011110 11 1237788888
Q ss_pred HHHhcCCCeeEEEEe
Q 038113 87 LVTGAGFGGIRFESF 101 (112)
Q Consensus 87 ll~~aGf~~~~~~~~ 101 (112)
-+.++||+.+.+.++
T Consensus 264 Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 264 RFLKAGWEYVIAVDM 278 (335)
T ss_pred HHHhcCCceeehhhH
Confidence 888999999987765
No 207
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=59.91 E-value=25 Score=23.97 Aligned_cols=54 Identities=9% Similarity=0.155 Sum_probs=30.4
Q ss_pred CEEEEEeeecCCCCCCchhh---hhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCeeE
Q 038113 40 GMVIIVETILPKLPETRTLS---KIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIR 97 (112)
Q Consensus 40 g~l~i~e~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 97 (112)
+.+++.+.-.+....++... ......+... ...|..++.+++.++++ .|...+-
T Consensus 163 ~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipv---i~~GGi~s~edi~~l~~-~G~~~vi 219 (234)
T PRK13587 163 GGIIYTDIAKDGKMSGPNFELTGQLVKATTIPV---IASGGIRHQQDIQRLAS-LNVHAAI 219 (234)
T ss_pred CEEEEecccCcCCCCccCHHHHHHHHHhCCCCE---EEeCCCCCHHHHHHHHH-cCCCEEE
Confidence 57777776555443443222 1111122222 23677899999999985 7876543
No 208
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=59.46 E-value=6.9 Score=22.66 Aligned_cols=24 Identities=13% Similarity=0.376 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEe
Q 038113 23 EHCLKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 23 ~~~~~iL~~~~~aL~pgg~l~i~e 46 (112)
+....-++.+.+.|+|||.+++.|
T Consensus 82 ~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 82 EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 446778899999999999888766
No 209
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=59.40 E-value=6.1 Score=27.00 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=22.0
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~ 45 (112)
|.+.+.. .+.++.++..+.|+|||+++|-
T Consensus 164 DaIhvGA--------aa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 164 DAIHVGA--------AASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ceEEEcc--------CccccHHHHHHhhccCCeEEEe
Confidence 6666552 2457888888999999999884
No 210
>PF05772 NinB: NinB protein; InterPro: IPR008711 The ninR region of Bacteriophage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of Escherichia coli, respectively, operate on phage lambda []. Genetic recombination in phage lambda relies on DNA end processing by Exo to expose 3'-tailed strands for annealing and exchange by beta protein. Phage lambda encodes an additional recombinase, NinB (Orf), which participates in the early stages of recombination by supplying a function equivalent to the E. coli RecFOR complex. These host enzymes assist loading of the RecA strand exchange protein onto ssDNA coated with ssDNA-binding protein. NinB has two structural domains with unusual folds, and exists as an intertwined dimer [].; PDB: 1PC6_B.
Probab=59.00 E-value=29 Score=21.54 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=18.2
Q ss_pred hchhhhhcCCCceecCHHHHHHHHHhcCC-----CeeEEEEe
Q 038113 65 GDVLMMTQNPGGKERTKHELMTLVTGAGF-----GGIRFESF 101 (112)
Q Consensus 65 ~~~~~~~~~~~g~~rt~~e~~~ll~~aGf-----~~~~~~~~ 101 (112)
-|+.-.+.. +|+.++.++|+++|.+ +| ...++.+-
T Consensus 48 ~dIs~qv~~-~G~k~~~e~WK~~~~~-~~~~~~~~~~~~~~g 87 (127)
T PF05772_consen 48 GDISRQVEW-NGRKLDPEDWKELFTA-AFLIATGEEQRVVPG 87 (127)
T ss_dssp HHHHHH--B-TTB---HHHHHHHHHH-HH-----S--EEEE-
T ss_pred HHHHHHhHh-cCccCCHHHHHHHHHH-HHhhhccchhhhccC
Confidence 344433333 7999999999999984 45 44455553
No 211
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=58.87 E-value=12 Score=25.63 Aligned_cols=20 Identities=10% Similarity=0.170 Sum_probs=16.7
Q ss_pred CHHHHHHHHHhcCCCeeEEE
Q 038113 80 TKHELMTLVTGAGFGGIRFE 99 (112)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~ 99 (112)
++++|+..|+++||++....
T Consensus 217 dedswk~il~~~G~~v~~~l 236 (265)
T COG4822 217 DEDSWKNILEKNGFKVEVYL 236 (265)
T ss_pred chHHHHHHHHhCCceeEEEe
Confidence 67899999999999985443
No 212
>PLN02476 O-methyltransferase
Probab=58.61 E-value=62 Score=22.85 Aligned_cols=35 Identities=14% Similarity=0.379 Sum_probs=24.9
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETIL 49 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~ 49 (112)
|++++ |-+..+-...+..+.+.|+|||.+++ |.+.
T Consensus 196 D~VFI-----Da~K~~Y~~y~e~~l~lL~~GGvIV~-DNvL 230 (278)
T PLN02476 196 DFAFV-----DADKRMYQDYFELLLQLVRVGGVIVM-DNVL 230 (278)
T ss_pred CEEEE-----CCCHHHHHHHHHHHHHhcCCCcEEEE-ecCc
Confidence 65554 33455567889999999999998766 5444
No 213
>PF13592 HTH_33: Winged helix-turn helix
Probab=58.54 E-value=11 Score=19.82 Aligned_cols=27 Identities=15% Similarity=0.109 Sum_probs=21.6
Q ss_pred CceecCHHHHHHHHHhcCCCeeEEEEe
Q 038113 75 GGKERTKHELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (112)
-|..++...+..+|.+.||+-.+-.+.
T Consensus 18 fgv~ys~~~v~~lL~r~G~s~~kp~~~ 44 (60)
T PF13592_consen 18 FGVKYSPSGVYRLLKRLGFSYQKPRPR 44 (60)
T ss_pred HCCEEcHHHHHHHHHHcCCccccCCCC
Confidence 356679999999999999997755443
No 214
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=57.64 E-value=7.3 Score=24.61 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEee
Q 038113 24 HCLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 24 ~~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
.-.+.|+++.+.|+|||.+.|+=.
T Consensus 70 TTl~Al~~al~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 70 TTLKALEAALELLKPGGIITIVVY 93 (140)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred HHHHHHHHHHHhhccCCEEEEEEe
Confidence 357788999999999999998754
No 215
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=57.34 E-value=27 Score=23.96 Aligned_cols=66 Identities=12% Similarity=-0.008 Sum_probs=33.8
Q ss_pred hhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCeeEEEE
Q 038113 34 KSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFES 100 (112)
Q Consensus 34 ~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 100 (112)
+++++|.+++|+|-+.................+....... ---.+....|+++.++.|+.+..+..
T Consensus 171 ~~l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~-vlv~~~~~~~~~l~~~~~vpv~sl~~ 236 (238)
T PRK08558 171 SALKKGDRVLIVDDIIRSGETQRALLDLARQAGADVVGVF-FLIAVGEVGIDRAREETDAPVDALYT 236 (238)
T ss_pred HHcCCcCEEEEEecccccCHHHHHHHHHHHHcCCEEEEEE-EEEecCchHHHHHhHhcCCCEEEEEE
Confidence 5688999999999888755321110000000111000000 00122344588888888887766654
No 216
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=56.69 E-value=13 Score=24.28 Aligned_cols=60 Identities=18% Similarity=0.148 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCeeEEEEe
Q 038113 25 CLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (112)
-..+++-+++.|.|||+|+| |.+.|... ..+.. .|..-...-+-..|.++||+-.+-+..
T Consensus 65 E~~l~~~~~~~l~pg~~lfV-eY~~D~eT------~~~L~----------~G~pp~~TrLG~~Ll~~GFtwfKdWYf 124 (170)
T PF06557_consen 65 EDELYKLFSRYLEPGGRLFV-EYVEDRET------RRQLQ----------RGVPPAETRLGFSLLKAGFTWFKDWYF 124 (170)
T ss_dssp HHHHHHHHHTT----SEEEE-E-TT-HHH------HHHHH----------TT--GGGSHHHHHHHTTT--EEEEEE-
T ss_pred HHHHHHHHHHHhhhcCeEEE-EEecCHHH------HHHHH----------cCCCcccchhHHHHHhCCcEEEeeeec
Confidence 36899999999999999987 55544321 00111 222222334566777899998876654
No 217
>PRK09213 pur operon repressor; Provisional
Probab=56.18 E-value=37 Score=23.90 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=15.6
Q ss_pred hhCCCCCEEEEEeeecCCC
Q 038113 34 KSIPKDGMVIIVETILPKL 52 (112)
Q Consensus 34 ~aL~pgg~l~i~e~~~~~~ 52 (112)
+++++|.+++|+|-+....
T Consensus 191 ~~l~~G~rVLIVDDv~~TG 209 (271)
T PRK09213 191 RSLKEGSRVLIVDDFMKAG 209 (271)
T ss_pred hhcCCcCEEEEEeeecccC
Confidence 6788999999999877643
No 218
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=55.95 E-value=4.1 Score=28.36 Aligned_cols=81 Identities=21% Similarity=0.262 Sum_probs=46.0
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceec------CHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKER------TKH 82 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~r------t~~ 82 (112)
|+++.+..+|-.+| .-.-+.+|..+|||+|.++- - +...+. .++ ......+.-+- ..+|-.. ...
T Consensus 139 DLiisSlslHW~Nd--LPg~m~~ck~~lKPDg~Fia-s-mlggdT---LyE-LR~slqLAelE-R~GGiSphiSPf~qvr 209 (325)
T KOG2940|consen 139 DLIISSLSLHWTND--LPGSMIQCKLALKPDGLFIA-S-MLGGDT---LYE-LRCSLQLAELE-REGGISPHISPFTQVR 209 (325)
T ss_pred hhhhhhhhhhhhcc--CchHHHHHHHhcCCCccchh-H-Hhcccc---HHH-HHHHhhHHHHH-hccCCCCCcChhhhhh
Confidence 99999999985555 34567889999999987643 2 222221 111 11112222111 1122111 234
Q ss_pred HHHHHHHhcCCCeeEE
Q 038113 83 ELMTLVTGAGFGGIRF 98 (112)
Q Consensus 83 e~~~ll~~aGf~~~~~ 98 (112)
+.-.+|..|||....+
T Consensus 210 DiG~LL~rAGF~m~tv 225 (325)
T KOG2940|consen 210 DIGNLLTRAGFSMLTV 225 (325)
T ss_pred hhhhHHhhcCccccee
Confidence 6778999999997665
No 219
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=55.62 E-value=14 Score=21.90 Aligned_cols=18 Identities=11% Similarity=0.135 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCCCeeEE
Q 038113 81 KHELMTLVTGAGFGGIRF 98 (112)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~ 98 (112)
.+.|+..|+++||++.-+
T Consensus 81 ~~SW~~~l~~~g~~v~~~ 98 (103)
T cd03413 81 PDSWKSILEAAGIKVETV 98 (103)
T ss_pred chhHHHHHHHCCCeeEEE
Confidence 568999999999988643
No 220
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=55.34 E-value=29 Score=23.93 Aligned_cols=25 Identities=8% Similarity=0.112 Sum_probs=20.5
Q ss_pred CCceecCHHHHHHHHHhcCCCeeEE
Q 038113 74 PGGKERTKHELMTLVTGAGFGGIRF 98 (112)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~~~~~ 98 (112)
.+|..++.+++.+++++.|..-+-+
T Consensus 201 asGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 201 ALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred EeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 4788899999999998888776543
No 221
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=54.73 E-value=42 Score=19.64 Aligned_cols=47 Identities=9% Similarity=0.146 Sum_probs=29.2
Q ss_pred cccEEEecccc-ccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC
Q 038113 7 KGDAIYMKWIL-HDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLP 53 (112)
Q Consensus 7 ~~D~v~~~~vl-h~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~ 53 (112)
+||++++..+- -+-.+++....++++.+.=+|+.++++.-.+.+..+
T Consensus 36 ~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~aq~~~ 83 (98)
T PF00919_consen 36 EADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMAQRYG 83 (98)
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCccccCh
Confidence 46999887743 222234455555555554348889988887766543
No 222
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=54.61 E-value=29 Score=18.53 Aligned_cols=27 Identities=7% Similarity=0.085 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCCCeeEEEEeCCceEE
Q 038113 81 KHELMTLVTGAGFGGIRFESFICNLWV 107 (112)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~~~~v 107 (112)
..++.+|++..|++.+.+...++.+.+
T Consensus 40 ~~di~~~~~~~g~~~~~~~~~~~~~~i 66 (70)
T PF01206_consen 40 VEDIPRWCEENGYEVVEVEEEGGEYRI 66 (70)
T ss_dssp HHHHHHHHHHHTEEEEEEEESSSSEEE
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCEEEE
Confidence 567899999999998888776555544
No 223
>PF09382 RQC: RQC domain; InterPro: IPR018982 This entry represents the RQC domain, which is a DNA-binding domain found only in RecQ family enzymes. RecQ family helicases can unwind G4 DNA, and play important roles at G-rich domains of the genome, including the telomeres, rDNA, and immunoglobulin switch regions. This domain has a helix-turn-helix structure and acts as a high affinity G4 DNA binding domain []. Binding of RecQ to Holliday junctions involves both the RQC and the HRDC domains.; GO: 0043140 ATP-dependent 3'-5' DNA helicase activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1OYW_A 1OYY_A 3AAF_A 2AXL_A 2V1X_B 2WWY_B.
Probab=54.06 E-value=6.8 Score=22.88 Aligned_cols=63 Identities=14% Similarity=0.133 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhc
Q 038113 23 EHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGA 91 (112)
Q Consensus 23 ~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~a 91 (112)
+++..+|+-+.+.=..=|.-.++|...+.....- ....+.-+...+-|+..+..+|++++.+.
T Consensus 4 ~~a~~il~~V~~~~~~~~~~~ivdvlrGs~~~~i------~~~~~~~l~~yG~gk~~~~~~~~~li~~L 66 (106)
T PF09382_consen 4 EEAKKILSCVQRLKQRFGLSQIVDVLRGSKSKKI------REKGHDQLPTYGIGKDMSKDDWERLIRQL 66 (106)
T ss_dssp HHHHHHHHHHHHTTT-S-HHHHHHHHTT-S-CCC------HHTTGGGSTTTTTTTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHhccchhh------hhcCCCcCcccCCcccCCHHHHHHHHHHH
Confidence 3577888887776444466666676665443221 01112222223457888999999988754
No 224
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=53.23 E-value=13 Score=26.34 Aligned_cols=62 Identities=19% Similarity=0.331 Sum_probs=36.0
Q ss_pred cEEEecc-ccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHH
Q 038113 9 DAIYMKW-ILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTL 87 (112)
Q Consensus 9 D~v~~~~-vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l 87 (112)
|++++++ ..|.++++ +.++++|+|.| |+|...---.-.. ....--.+...+|
T Consensus 224 d~ifvs~s~vh~L~p~--------l~~~~a~~A~L-vvEtaKfmvdLrK------------------Eq~~~F~~kv~eL 276 (289)
T PF14740_consen 224 DLIFVSCSMVHFLKPE--------LFQALAPDAVL-VVETAKFMVDLRK------------------EQLQEFVKKVKEL 276 (289)
T ss_pred CEEEEhhhhHhhcchH--------HHHHhCCCCEE-EEEcchhheeCCH------------------HHHHHHHHHHHHH
Confidence 6666655 77777775 56677899766 4465321100000 0000124578999
Q ss_pred HHhcCCCeeE
Q 038113 88 VTGAGFGGIR 97 (112)
Q Consensus 88 l~~aGf~~~~ 97 (112)
.++|||+...
T Consensus 277 A~~aG~~p~~ 286 (289)
T PF14740_consen 277 AKAAGFKPVT 286 (289)
T ss_pred HHHCCCcccc
Confidence 9999998754
No 225
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=52.78 E-value=47 Score=22.85 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=28.8
Q ss_pred CCCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 038113 3 QNVAK-GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 3 ~~~P~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e 46 (112)
+.+|+ +|++++..--.++++++. ..+.+-|..||++++.-
T Consensus 192 ~~IP~~~d~Lvi~~P~~~ls~~e~----~~l~~yl~~GG~ll~~~ 232 (271)
T PF09822_consen 192 EEIPDDADVLVIAGPKTDLSEEEL----YALDQYLMNGGKLLILL 232 (271)
T ss_pred cccCCCCCEEEEECCCCCCCHHHH----HHHHHHHHcCCeEEEEE
Confidence 35775 599999998888998764 34445555699988763
No 226
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=52.77 E-value=33 Score=23.26 Aligned_cols=41 Identities=7% Similarity=0.078 Sum_probs=27.5
Q ss_pred cccEEEeccccccCChHHHHHHHHHHHhhCCC-CCEEEEEeeecC
Q 038113 7 KGDAIYMKWILHDWSDEHCLKLFKKCYKSIPK-DGMVIIVETILP 50 (112)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p-gg~l~i~e~~~~ 50 (112)
..|+++.+.++.+-+. +.+++. +...|.. |..++|-|+-.+
T Consensus 142 ~~Dl~LagDlfy~~~~--a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 142 AFDLLLAGDLFYNHTE--ADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred ceeEEEeeceecCchH--HHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 3499999999976554 567777 5555554 666666555443
No 227
>PRK06852 aldolase; Validated
Probab=52.47 E-value=15 Score=26.33 Aligned_cols=28 Identities=11% Similarity=0.163 Sum_probs=24.6
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 038113 18 HDWSDEHCLKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 18 h~~~d~~~~~iL~~~~~aL~pgg~l~i~ 45 (112)
-+|++++....+.|..+.++..||++|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~sGr~~iv 36 (304)
T PRK06852 9 LDVPEEMREEYIENYLEITKGTGRLMLF 36 (304)
T ss_pred CcCChhcChhHHHHHHHhhCCCCCEEEE
Confidence 4677777889999999999999999987
No 228
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.06 E-value=47 Score=19.47 Aligned_cols=38 Identities=11% Similarity=0.053 Sum_probs=28.3
Q ss_pred CceecCHHHHHHHHHhcCCCeeE----EEEeCCceEEEEEEC
Q 038113 75 GGKERTKHELMTLVTGAGFGGIR----FESFICNLWVMEFYK 112 (112)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~~----~~~~~~~~~vie~~~ 112 (112)
.|..-+.+.+.+.|++.|+.+.. ++...++.+.||+.+
T Consensus 8 rGf~~~~dri~~~l~e~g~~v~~eGD~ivas~pgis~ieik~ 49 (96)
T COG4004 8 RGFKPDPDRIMRGLSELGWTVSEEGDRIVASSPGISRIEIKP 49 (96)
T ss_pred cCCCCCHHHHHHHHHHhCeeEeecccEEEEecCCceEEEEec
Confidence 46667899999999999987653 344567788887753
No 229
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=51.22 E-value=34 Score=23.58 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=13.3
Q ss_pred CHHHHHHHHHhcCCCeeEE
Q 038113 80 TKHELMTLVTGAGFGGIRF 98 (112)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~ 98 (112)
+.+++.+.+-++|-..++.
T Consensus 148 ~~d~~~e~aieaGAedv~~ 166 (238)
T TIGR01033 148 DEEDLMEAAIEAGAEDIDV 166 (238)
T ss_pred CHHHHHHHHHhCCCceeec
Confidence 4567777777788777643
No 230
>PRK04280 arginine repressor; Provisional
Probab=50.93 E-value=16 Score=23.19 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=18.5
Q ss_pred CceecCHHHHHHHHHhcCCCeeE
Q 038113 75 GGKERTKHELMTLVTGAGFGGIR 97 (112)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~~ 97 (112)
+....|.+|+.+.|++.||.+.+
T Consensus 15 ~~~I~tQeeL~~~L~~~Gi~vTQ 37 (148)
T PRK04280 15 NNEIETQDELVDRLREEGFNVTQ 37 (148)
T ss_pred hCCCCCHHHHHHHHHHcCCCeeh
Confidence 44557899999999999998754
No 231
>PRK00536 speE spermidine synthase; Provisional
Probab=50.84 E-value=19 Score=25.19 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=22.4
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~ 45 (112)
|+|++=.. .+ ....+.|+++|+|||.++..
T Consensus 141 DVIIvDs~----~~---~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 141 DLIICLQE----PD---IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred CEEEEcCC----CC---hHHHHHHHHhcCCCcEEEEC
Confidence 88765432 23 46789999999999998774
No 232
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=50.57 E-value=21 Score=19.11 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=17.9
Q ss_pred ceecCHHHHHHHHHhcCCCee
Q 038113 76 GKERTKHELMTLVTGAGFGGI 96 (112)
Q Consensus 76 g~~rt~~e~~~ll~~aGf~~~ 96 (112)
|...+.++..++|+..||+..
T Consensus 16 G~~i~~~ei~~~L~~lg~~~~ 36 (71)
T smart00874 16 GLDLSAEEIEEILKRLGFEVE 36 (71)
T ss_pred CCCCCHHHHHHHHHHCCCeEE
Confidence 445789999999999999874
No 233
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=50.57 E-value=12 Score=20.63 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=13.2
Q ss_pred ceecCHHHHHHHHHhcCCCeeE
Q 038113 76 GKERTKHELMTLVTGAGFGGIR 97 (112)
Q Consensus 76 g~~rt~~e~~~ll~~aGf~~~~ 97 (112)
....|.+|+.+.|++.||.+.+
T Consensus 17 ~~i~sQ~eL~~~L~~~Gi~vTQ 38 (70)
T PF01316_consen 17 HEISSQEELVELLEEEGIEVTQ 38 (70)
T ss_dssp S---SHHHHHHHHHHTT-T--H
T ss_pred CCcCCHHHHHHHHHHcCCCcch
Confidence 3456888999999988988643
No 234
>PF10006 DUF2249: Uncharacterized conserved protein (DUF2249); InterPro: IPR018720 This domain is found in a number of hypothetical bacterial and archaeal proteins with no known function. It is also found in proteins described as cupin 2 and hemerythrin. It represents a conserved region that shows distant similarity to the SirA protein (see IPR001455 from INTERPRO).
Probab=50.55 E-value=37 Score=18.21 Aligned_cols=27 Identities=7% Similarity=0.121 Sum_probs=19.1
Q ss_pred ChHHHHHHHHHHHhhCCCCCEEEEEee
Q 038113 21 SDEHCLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 21 ~d~~~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
+..+....+-+..+.|+||..+.++..
T Consensus 8 ~~~~p~~~il~~~~~L~~Ge~l~lv~d 34 (69)
T PF10006_consen 8 PPPEPHERILEALDELPPGETLELVND 34 (69)
T ss_pred CCcChHHHHHHHHHcCCCCCEEEEEeC
Confidence 445555666667888999988877653
No 235
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=50.44 E-value=16 Score=20.77 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=19.5
Q ss_pred ecCHHHHHHHHHhcCCCeeEEEEe
Q 038113 78 ERTKHELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 78 ~rt~~e~~~ll~~aGf~~~~~~~~ 101 (112)
+.+..++++.|++.||+++....-
T Consensus 7 E~~Ls~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 7 EEGLSNVKEALREKGYEVVDLENE 30 (80)
T ss_pred cCCchHHHHHHHHCCCEEEecCCc
Confidence 456789999999999999876543
No 236
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=49.94 E-value=28 Score=23.80 Aligned_cols=27 Identities=22% Similarity=0.508 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEeeecC
Q 038113 24 HCLKLFKKCYKSIPKDGMVIIVETILP 50 (112)
Q Consensus 24 ~~~~iL~~~~~aL~pgg~l~i~e~~~~ 50 (112)
.+..+++++.+.++.||.++++|.-.+
T Consensus 172 ~~~~~l~~l~~~~~~~g~~l~iDYG~~ 198 (252)
T PF02636_consen 172 GALQWLEQLAERLPKGGALLIIDYGYP 198 (252)
T ss_dssp CHHHHHHHHHHHCCC-EEEEEEEEEES
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeCCCC
Confidence 468899999999999899999998663
No 237
>PRK10858 nitrogen regulatory protein P-II 1; Provisional
Probab=49.91 E-value=38 Score=20.43 Aligned_cols=28 Identities=7% Similarity=0.182 Sum_probs=22.2
Q ss_pred CChHHHHHHHHHHHhhCCCC----CEEEEEee
Q 038113 20 WSDEHCLKLFKKCYKSIPKD----GMVIIVET 47 (112)
Q Consensus 20 ~~d~~~~~iL~~~~~aL~pg----g~l~i~e~ 47 (112)
.+|+++.++++.+.++.+.| |++++.+-
T Consensus 65 v~D~~v~~vv~~I~~~a~TG~~GDGkIfV~pV 96 (112)
T PRK10858 65 VPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDV 96 (112)
T ss_pred EChHhHHHHHHHHHHHhccCCCCCcEEEEEEh
Confidence 36778888999888888864 99988763
No 238
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=49.51 E-value=46 Score=23.41 Aligned_cols=19 Identities=16% Similarity=0.364 Sum_probs=15.5
Q ss_pred hhCCCCCEEEEEeeecCCC
Q 038113 34 KSIPKDGMVIIVETILPKL 52 (112)
Q Consensus 34 ~aL~pgg~l~i~e~~~~~~ 52 (112)
+++++|.+++|+|-+....
T Consensus 189 ~~l~~G~rVLIVDDv~~TG 207 (268)
T TIGR01743 189 RSLKTGSKVLIIDDFMKAG 207 (268)
T ss_pred hhCCCcCEEEEEeeecccC
Confidence 6788999999999877643
No 239
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=49.46 E-value=70 Score=21.15 Aligned_cols=67 Identities=12% Similarity=0.108 Sum_probs=33.9
Q ss_pred hhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCeeEEEEe
Q 038113 34 KSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 34 ~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (112)
+++++|.+++|+|-+.....+.....+............. ---.|....+++.|++.|.....+...
T Consensus 112 ~~l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~-~lvd~~~~~g~~~l~~~gvpv~sL~~~ 178 (191)
T TIGR01744 112 EFLSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIG-IVIEKSFQNGRQELVELGYRVESLARI 178 (191)
T ss_pred HhCCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEE-EEEEecCccHHHHHHhcCCcEEEEEEE
Confidence 4578999999999888754322111000000000000000 001234345777888888887666554
No 240
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=49.24 E-value=9.1 Score=25.30 Aligned_cols=21 Identities=5% Similarity=0.135 Sum_probs=18.0
Q ss_pred HHHHHHHHhhCCCCCEEEEEe
Q 038113 26 LKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~e 46 (112)
..+|..+++.|+|||.+.+..
T Consensus 113 ~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 113 PEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred chHHHHHHHHcCCCCEEEEEe
Confidence 478999999999999997754
No 241
>COG1795 Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion]
Probab=49.16 E-value=14 Score=23.71 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=21.7
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCC
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIP 37 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~ 37 (112)
|++++.+++-+++-++..++.+.=+.+.+
T Consensus 107 d~vvi~svfv~~~a~d~~kiY~ynY~A~k 135 (170)
T COG1795 107 DVVVIVSVFVHPEAEDKRKIYQYNYGATK 135 (170)
T ss_pred CEEEEEEeEeCcccccHHHHHHHhHHHHH
Confidence 78888888777887777888877666543
No 242
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=48.92 E-value=59 Score=22.34 Aligned_cols=17 Identities=12% Similarity=0.061 Sum_probs=11.6
Q ss_pred HHHHHHHHhcCCCeeEE
Q 038113 82 HELMTLVTGAGFGGIRF 98 (112)
Q Consensus 82 ~e~~~ll~~aGf~~~~~ 98 (112)
+.+.++++..|.+.+..
T Consensus 140 ~~~~~l~~~~Ga~~~~~ 156 (258)
T PF02153_consen 140 ELVEELWEALGARVVEM 156 (258)
T ss_dssp HHHHHHHHHCT-EEEE-
T ss_pred HHHHHHHHHCCCEEEEc
Confidence 56788899999766543
No 243
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=48.26 E-value=11 Score=25.37 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=21.7
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e 46 (112)
|.+++.......+. .+.+.|++||+|++--
T Consensus 143 D~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 143 DRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPI 172 (209)
T ss_dssp EEEEESSBBSS--H--------HHHHTEEEEEEEEEEE
T ss_pred CEEEEeeccchHHH--------HHHHhcCCCcEEEEEE
Confidence 99999988765544 2556689999999843
No 244
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=48.08 E-value=42 Score=17.68 Aligned_cols=25 Identities=8% Similarity=-0.008 Sum_probs=18.9
Q ss_pred CHHHHHHHHHhcCCCeeEEEEeCCc
Q 038113 80 TKHELMTLVTGAGFGGIRFESFICN 104 (112)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~~~~ 104 (112)
+..++.+|+++.|++.......++.
T Consensus 38 ~~~~i~~~~~~~g~~~~~~~~~~~~ 62 (69)
T cd00291 38 AVEDIPAWAKETGHEVLEVEEEGGV 62 (69)
T ss_pred HHHHHHHHHHHcCCEEEEEEEeCCE
Confidence 3567889999999998776665543
No 245
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=48.07 E-value=67 Score=21.22 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=34.9
Q ss_pred hhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCeeEEEEe
Q 038113 34 KSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 34 ~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (112)
..+++|-+++|+|-+.-...+.....+.....+....... ---.++...+++.+++.|+....+.+.
T Consensus 112 ~~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~-~lvd~~~~~g~~~l~~~g~~~~sl~~~ 178 (189)
T PRK09219 112 KFLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIG-IVIEKSFQDGRKLLEEKGYRVESLARI 178 (189)
T ss_pred hhCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEE-EEEEccCccHHHHHHhcCCcEEEEEEe
Confidence 4678999999999888754321110000000000000000 001234446788888889887777655
No 246
>PRK13605 endoribonuclease SymE; Provisional
Probab=47.66 E-value=27 Score=21.26 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=11.8
Q ss_pred HHHHhcCCCeeEEEEe
Q 038113 86 TLVTGAGFGGIRFESF 101 (112)
Q Consensus 86 ~ll~~aGf~~~~~~~~ 101 (112)
.||++|||..-.-+.+
T Consensus 45 ~WLeeAGF~tG~~V~V 60 (113)
T PRK13605 45 QWLEAAGFATGTAVDV 60 (113)
T ss_pred hhHHhhCCCCCCeEEE
Confidence 6899999997654443
No 247
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=47.10 E-value=34 Score=21.38 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=31.3
Q ss_pred cEEEeccccc--cCChHHHHHHHHHHHhhCCC-CCEEEEEee
Q 038113 9 DAIYMKWILH--DWSDEHCLKLFKKCYKSIPK-DGMVIIVET 47 (112)
Q Consensus 9 D~v~~~~vlh--~~~d~~~~~iL~~~~~aL~p-gg~l~i~e~ 47 (112)
.++|++.+=+ ..++.+...+...+.+-|+. ++.++++|.
T Consensus 42 ~viWlT~~~~~~~I~Pt~L~~l~~~i~~fl~~~~~~vViiD~ 83 (136)
T PF05763_consen 42 PVIWLTKVEGENAISPTNLHKLLDTIVRFLKENGNGVVIIDG 83 (136)
T ss_pred cEEEEeccCCCCccCchhhHHHHHHHHHHHHhCCCcEEEEec
Confidence 5899999865 46676778888889999988 677888886
No 248
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=47.06 E-value=61 Score=26.58 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCC
Q 038113 25 CLKLFKKCYKSIPKDGMVIIVETILPK 51 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~e~~~~~ 51 (112)
..+.++++++.|+++|++++.=.....
T Consensus 567 ~~~a~~~~rEll~ddg~lv~y~ahk~~ 593 (875)
T COG1743 567 FREAFQAVRELLKDDGRLVTYYAHKAP 593 (875)
T ss_pred HHHHHHHHHHhcCCCCeEEEEEeccCc
Confidence 367888999999999999887665543
No 249
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=46.63 E-value=26 Score=23.89 Aligned_cols=21 Identities=10% Similarity=0.233 Sum_probs=18.0
Q ss_pred HHHHHHHHhhCCCCCEEEEEe
Q 038113 26 LKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~e 46 (112)
...|+.+.+.|+|||.+.+..
T Consensus 144 ~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 144 PEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred HHHHHHHHHHccCCCEEEEEe
Confidence 468999999999999998754
No 250
>PRK13245 hetR heterocyst differentiation control protein; Reviewed
Probab=46.55 E-value=9 Score=26.33 Aligned_cols=30 Identities=10% Similarity=0.211 Sum_probs=25.1
Q ss_pred eccccccCChHHHHHHHHHHHhhCCCCCEE
Q 038113 13 MKWILHDWSDEHCLKLFKKCYKSIPKDGMV 42 (112)
Q Consensus 13 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l 42 (112)
+..-||++....+..|.++++++|..|..|
T Consensus 63 MTGHLHHiEPKRVKvIVeEv~qaltegklL 92 (299)
T PRK13245 63 MTGHLHHLEPKRVKIIVEEVRQALTEGKLL 92 (299)
T ss_pred eeccccccChhhhhHHHHHHHHHHhhhhHH
Confidence 455689999998999999999999987543
No 251
>PLN02823 spermine synthase
Probab=46.08 E-value=24 Score=25.52 Aligned_cols=20 Identities=5% Similarity=0.222 Sum_probs=16.3
Q ss_pred HHHHH-HHHhhCCCCCEEEEE
Q 038113 26 LKLFK-KCYKSIPKDGMVIIV 45 (112)
Q Consensus 26 ~~iL~-~~~~aL~pgg~l~i~ 45 (112)
.+.++ .+++.|+|||.+++.
T Consensus 199 ~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 199 KSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred HHHHHHHHHHhcCCCcEEEEe
Confidence 46787 899999999987653
No 252
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=46.03 E-value=23 Score=19.23 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=15.9
Q ss_pred ceecCHHHHHHHHHhcCCCeeEE
Q 038113 76 GKERTKHELMTLVTGAGFGGIRF 98 (112)
Q Consensus 76 g~~rt~~e~~~ll~~aGf~~~~~ 98 (112)
|...+.++..++|+..||+....
T Consensus 16 G~~i~~~~i~~~L~~lg~~~~~~ 38 (70)
T PF03484_consen 16 GIDISPEEIIKILKRLGFKVEKI 38 (70)
T ss_dssp TS---HHHHHHHHHHTT-EEEE-
T ss_pred CCCCCHHHHHHHHHHCCCEEEEC
Confidence 44578999999999999998763
No 253
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=45.96 E-value=16 Score=20.76 Aligned_cols=25 Identities=12% Similarity=0.108 Sum_probs=16.4
Q ss_pred CceecCHHHHHHHHHhcCCCeeEEE
Q 038113 75 GGKERTKHELMTLVTGAGFGGIRFE 99 (112)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~~~~ 99 (112)
.|...|.+++.+.|+..|++.+.-.
T Consensus 3 ~G~~ls~~~l~~eL~~LgYR~v~~~ 27 (85)
T PF14814_consen 3 PGAPLSPAQLEQELELLGYRKVSNP 27 (85)
T ss_dssp TT-S--HHHHHHHHHHTT-EE-SS-
T ss_pred CCcccCHHHHHHHHHHcCCCcCCCC
Confidence 5667899999999999999988543
No 254
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=45.89 E-value=26 Score=24.75 Aligned_cols=20 Identities=15% Similarity=0.620 Sum_probs=18.4
Q ss_pred HHHHHHHHhhCCCCCEEEEE
Q 038113 26 LKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~ 45 (112)
...++.|+++|+++|.++..
T Consensus 170 ~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 170 EEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHHHHHHHHhcCCCcEEEEe
Confidence 68999999999999999887
No 255
>PRK00110 hypothetical protein; Validated
Probab=45.76 E-value=52 Score=22.82 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=14.1
Q ss_pred CHHHHHHHHHhcCCCeeEE
Q 038113 80 TKHELMTLVTGAGFGGIRF 98 (112)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~ 98 (112)
+.+++.+.+-++|-..++.
T Consensus 146 ~~d~~~e~aieaGaeDv~~ 164 (245)
T PRK00110 146 DEDELMEAALEAGAEDVET 164 (245)
T ss_pred CHHHHHHHHHhCCCCEeec
Confidence 4677888888889887653
No 256
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=45.43 E-value=16 Score=23.12 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=26.1
Q ss_pred CCC-cccEEEecccc---ccCChHHHHHHHHHHHhhCCCCCEEE
Q 038113 4 NVA-KGDAIYMKWIL---HDWSDEHCLKLFKKCYKSIPKDGMVI 43 (112)
Q Consensus 4 ~~P-~~D~v~~~~vl---h~~~d~~~~~iL~~~~~aL~pgg~l~ 43 (112)
..| ++|++++..-- |+..-.+...+.+.++++...|+.++
T Consensus 3 ~~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~ 46 (158)
T PF07685_consen 3 ELPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIY 46 (158)
T ss_pred CCCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEE
Confidence 445 46999998743 33333345677788888887776543
No 257
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=45.10 E-value=50 Score=17.75 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcCCCeeEEEEeCCceE
Q 038113 81 KHELMTLVTGAGFGGIRFESFICNLW 106 (112)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~~~~ 106 (112)
..++.+|.++.|++........+.+.
T Consensus 39 ~~di~~~~~~~G~~~~~~~~~~~~~~ 64 (69)
T cd03420 39 ARDAQAWCKSTGNTLISLETEKGKVK 64 (69)
T ss_pred HHHHHHHHHHcCCEEEEEEecCCEEE
Confidence 55778899999999987666544333
No 258
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=45.05 E-value=55 Score=25.08 Aligned_cols=45 Identities=20% Similarity=0.270 Sum_probs=34.1
Q ss_pred cEEEeccccccCC-hHHH-------HHHHHHHHhhCCCCCEEEEEeee--cCCCC
Q 038113 9 DAIYMKWILHDWS-DEHC-------LKLFKKCYKSIPKDGMVIIVETI--LPKLP 53 (112)
Q Consensus 9 D~v~~~~vlh~~~-d~~~-------~~iL~~~~~aL~pgg~l~i~e~~--~~~~~ 53 (112)
|+++....+|++- |+++ ...+.++.+.|+|||+.+.+-.. .+..+
T Consensus 116 diVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~r 170 (482)
T KOG2352|consen 116 DIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLVQVVPQGR 170 (482)
T ss_pred eEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEeeeeccCCC
Confidence 9999999998855 3332 23578999999999999988874 55443
No 259
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=44.98 E-value=74 Score=20.62 Aligned_cols=7 Identities=29% Similarity=0.823 Sum_probs=3.5
Q ss_pred CEEEEEe
Q 038113 40 GMVIIVE 46 (112)
Q Consensus 40 g~l~i~e 46 (112)
..+++.|
T Consensus 108 p~llLlD 114 (176)
T cd03238 108 GTLFILD 114 (176)
T ss_pred CCEEEEe
Confidence 4555544
No 260
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=43.89 E-value=9 Score=26.88 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=22.0
Q ss_pred HHHHHHHHhhC----CCCCEEEEEeeecCC
Q 038113 26 LKLFKKCYKSI----PKDGMVIIVETILPK 51 (112)
Q Consensus 26 ~~iL~~~~~aL----~pgg~l~i~e~~~~~ 51 (112)
.+||+++.+.+ +|||+++-.-..+..
T Consensus 195 ~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~ 224 (283)
T PF01189_consen 195 REILDNAAKLLNIDFKPGGRLVYSTCSLSP 224 (283)
T ss_dssp HHHHHHHHHCEHHHBEEEEEEEEEESHHHG
T ss_pred HHHHHHHHHhhcccccCCCeEEEEeccHHH
Confidence 68999999999 999999888765543
No 261
>PRK09019 translation initiation factor Sui1; Validated
Probab=43.87 E-value=72 Score=19.25 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=34.9
Q ss_pred CChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCee
Q 038113 20 WSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGI 96 (112)
Q Consensus 20 ~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 96 (112)
.++.+..++++.+.+.+.-||.+- |..+. . .|. -.+.+.++|++.||+..
T Consensus 55 ~~~~dlk~l~K~lKkk~gcGGtvk--~~~Ie----------------------l-QGD--~r~~v~~~L~~~Gf~~k 104 (108)
T PRK09019 55 LDDAELKKLAAELKKKCGCGGAVK--DGVIE----------------------I-QGD--KRDLLKSLLEAKGMKVK 104 (108)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEE--cCEEE----------------------E-cCc--HHHHHHHHHHHCCCeEE
Confidence 456778999999999999999874 10000 0 222 24578999999999875
No 262
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=43.64 E-value=51 Score=17.42 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCCeeEEEEeCC
Q 038113 81 KHELMTLVTGAGFGGIRFESFIC 103 (112)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~ 103 (112)
...+.+|+++.|++. .+....+
T Consensus 38 ~~~i~~~~~~~G~~~-~~~~~~~ 59 (67)
T cd03421 38 KENVSRFAESRGYEV-SVEEKGG 59 (67)
T ss_pred HHHHHHHHHHcCCEE-EEEecCC
Confidence 457788889999998 5555444
No 263
>COG1438 ArgR Arginine repressor [Transcription]
Probab=43.56 E-value=22 Score=22.75 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=17.4
Q ss_pred CceecCHHHHHHHHHhcCCCeeE
Q 038113 75 GGKERTKHELMTLVTGAGFGGIR 97 (112)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~~ 97 (112)
.-+..|.+|+.+.|++.||++.+
T Consensus 17 ~~~i~TQ~Elv~~L~~~Gi~vTQ 39 (150)
T COG1438 17 EEKISTQEELVELLQEEGIEVTQ 39 (150)
T ss_pred hCCCCCHHHHHHHHHHcCCeEeh
Confidence 44566888888888888888554
No 264
>PRK03094 hypothetical protein; Provisional
Probab=43.38 E-value=28 Score=19.86 Aligned_cols=24 Identities=13% Similarity=0.308 Sum_probs=19.7
Q ss_pred eecCHHHHHHHHHhcCCCeeEEEE
Q 038113 77 KERTKHELMTLVTGAGFGGIRFES 100 (112)
Q Consensus 77 ~~rt~~e~~~ll~~aGf~~~~~~~ 100 (112)
-+.+...+++.|++.||+++.+..
T Consensus 6 VE~~Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 6 VEQSLTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred eecCcHHHHHHHHHCCCEEEecCc
Confidence 345678999999999999987754
No 265
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=43.12 E-value=47 Score=23.53 Aligned_cols=37 Identities=8% Similarity=-0.008 Sum_probs=27.5
Q ss_pred CCceecCHHHHHHHHHhcCCCeeEEEEe-CCceEEEEE
Q 038113 74 PGGKERTKHELMTLVTGAGFGGIRFESF-ICNLWVMEF 110 (112)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~vie~ 110 (112)
..++..+..+.++.|+++||+.++.+.- ...+++..+
T Consensus 282 E~S~Kfslq~irq~laa~gl~~v~~wtd~~qdf~~~l~ 319 (321)
T COG4301 282 EISRKFSLQAIRQQLAAAGLEPVQKWTDAIQDFGLSLA 319 (321)
T ss_pred hhhhhCCHHHHHHHHHhcCCeEeeehhhhhhhhhhhee
Confidence 3566778889999999999999988754 344555444
No 266
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=43.05 E-value=43 Score=24.16 Aligned_cols=25 Identities=8% Similarity=0.074 Sum_probs=17.5
Q ss_pred HHHHHHHhhCCCCCEEEEEeeecCC
Q 038113 27 KLFKKCYKSIPKDGMVIIVETILPK 51 (112)
Q Consensus 27 ~iL~~~~~aL~pgg~l~i~e~~~~~ 51 (112)
.+|+.=++-|+|||++++.=.-.++
T Consensus 164 ~FL~~Ra~ELv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 164 SFLKARAEELVPGGRMVLTFLGRDE 188 (334)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEE-ST
T ss_pred HHHHHhhheeccCcEEEEEEeeccc
Confidence 3444444678999999998877665
No 267
>PRK10665 nitrogen regulatory protein P-II 2; Provisional
Probab=42.16 E-value=58 Score=19.61 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=21.6
Q ss_pred CChHHHHHHHHHHHhhCCC----CCEEEEEee
Q 038113 20 WSDEHCLKLFKKCYKSIPK----DGMVIIVET 47 (112)
Q Consensus 20 ~~d~~~~~iL~~~~~aL~p----gg~l~i~e~ 47 (112)
.+|+++.++.+.+.++.+. +|++++.+-
T Consensus 65 v~de~ve~vv~~I~~~a~TG~~GDGkIfV~pV 96 (112)
T PRK10665 65 IADDQLDEVIDIISKAAYTGKIGDGKIFVAEL 96 (112)
T ss_pred EChHhHHHHHHHHHHHhccCCCCCcEEEEEEh
Confidence 4678888888888888764 399988763
No 268
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=42.12 E-value=59 Score=17.76 Aligned_cols=29 Identities=21% Similarity=0.132 Sum_probs=23.4
Q ss_pred CChHHHHHHHHHHHhhCCCC-CEEEEEeee
Q 038113 20 WSDEHCLKLFKKCYKSIPKD-GMVIIVETI 48 (112)
Q Consensus 20 ~~d~~~~~iL~~~~~aL~pg-g~l~i~e~~ 48 (112)
.+..+...+++++.+.+.|+ +.+.+....
T Consensus 39 ~~~~~~~~l~~~l~~~i~~~~d~i~i~~l~ 68 (78)
T PF09827_consen 39 LTNAELRKLRRELEKLIDPDEDSIRIYPLC 68 (78)
T ss_dssp E-HHHHHHHHHHHHHHSCTTTCEEEEEEEE
T ss_pred cCHHHHHHHHHHHHhhCCCCCCEEEEEEeC
Confidence 46677889999999999998 999887753
No 269
>PF01870 Hjc: Archaeal holliday junction resolvase (hjc); InterPro: IPR002732 This entry represents Holliday junction resolvases (hjc gene) and related proteins, primarily from archaeal species []. The Holliday junction is an essential intermediate of homologous recombination. Holliday junctions are four-stranded DNA complexes that are formed during recombination and related DNA repair events. In the presence of divalent cations, these junctions exist predominantly as the stacked-X form in which the double-helical segments are coaxially stacked and twisted by 60 degrees in a right-handed direction across the junction cross-over. In this structure, the stacked arms resemble two adjacent double-helices, but are linked at the junction by two common strands that cross-over between the duplexes []. During homologous recombination, genetic information is physically exchanged between parental DNAs via crossing single strands of the same polarity within the four-way Holliday structure. This process is terminated by the endonucleolytic activity of resolvases, which convert the four-way DNA back to two double strands.; PDB: 2WJ0_A 2WIZ_B 2WIW_B 2WCW_C 2WCZ_A 1HH1_A 1GEF_D 1IPI_B 2EO0_B 1OB9_A ....
Probab=42.12 E-value=22 Score=20.56 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCCeeEE
Q 038113 81 KHELMTLVTGAGFGGIRF 98 (112)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~ 98 (112)
+.|+.++|.+.||.+++.
T Consensus 3 Erel~~~L~~~Gf~v~R~ 20 (88)
T PF01870_consen 3 ERELVKILWERGFAVVRA 20 (88)
T ss_dssp HHHHHHHHHHTT-EEEEB
T ss_pred HHHHHHHHHhCCcEEEEe
Confidence 568899999999988764
No 270
>PF00543 P-II: Nitrogen regulatory protein P-II members of this family.; InterPro: IPR002187 In Gram-negative bacteria, the activity and concentration of glutamine synthetase (GS) is regulated in response to nitrogen source availability. PII, a tetrameric protein encoded by the glnB gene, is a component of the adenylation cascade involved in the regulation of GS activity []. In nitrogen-limiting conditions, when the ratio of glutamine to 2-ketoglutarate decreases, P-II is uridylylated on a tyrosine residue to form P-II-UMP. P-II-UMP allows the deadenylation of GS, thus activating the enzyme. Conversely, in nitrogen excess, P-II-UMP is deuridylated and then promotes the adenylation of GS. P-II also indirectly controls the transcription of the GS gene (glnA) by preventing NR-II (ntrB) to phosphorylate NR-I (ntrC) which is the transcriptional activator of glnA. Once P-II is uridylylated, these events are reversed. P-II is a protein of about 110 amino acid residues extremely well conserved. The tyrosine which is uridylated is located in the central part of the protein. In cyanobacteria, P-II seems to be phosphorylated on a serine residue rather than being uridylated. In methanogenic archaebacteria, the nitrogenase iron protein gene (nifH) is followed by two open reading frames highly similar to the eubacterial P-II protein []. These proteins could be involved in the regulation of nitrogen fixation. In the red alga, Porphyra purpurea, there is a glnB homologue encoded in the chloroplast genome. Other proteins highly similar to glnB are: Bacillus subtilis protein nrgB []. Escherichia coli hypothetical protein ybaI []. ; GO: 0030234 enzyme regulator activity, 0006808 regulation of nitrogen utilization; PDB: 1V3S_B 1V3R_C 2XZW_A 2XUL_A 2V5H_J 2XG8_C 2JJ4_F 1QY7_C 4AFF_A 2XBP_A ....
Probab=41.79 E-value=25 Score=20.47 Aligned_cols=28 Identities=11% Similarity=0.208 Sum_probs=19.7
Q ss_pred CChHHHHHHHHHHHhhCCC---C-CEEEEEee
Q 038113 20 WSDEHCLKLFKKCYKSIPK---D-GMVIIVET 47 (112)
Q Consensus 20 ~~d~~~~~iL~~~~~aL~p---g-g~l~i~e~ 47 (112)
.+|+++.++++.+.+++.. | |++++.+.
T Consensus 62 v~d~~v~~iv~~I~~~~~tg~~GdGkIfV~~V 93 (102)
T PF00543_consen 62 VPDEDVEEIVEAISEAARTGEPGDGKIFVSPV 93 (102)
T ss_dssp EEGGGHHHHHHHHHHHH-SSSTTSEEEEEEEE
T ss_pred ECHHhHHHHHHHHHHhccCCCCCCEEEEEEEh
Confidence 3566778888888877664 3 88888764
No 271
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=41.68 E-value=87 Score=19.53 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=44.0
Q ss_pred CChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC--------------C--CchhhhhhhhhchhhhhcCCCceecCHHH
Q 038113 20 WSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLP--------------E--TRTLSKIISQGDVLMMTQNPGGKERTKHE 83 (112)
Q Consensus 20 ~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~--------------~--~~~~~~~~~~~~~~~~~~~~~g~~rt~~e 83 (112)
++++++..+|.+....|..-|.-+++-..+.... . .+..+ ....+++..-+. .|+..-|.+|
T Consensus 11 L~~~ea~~FL~~~~~~L~~~Gi~V~lP~~w~~~~~~~l~l~~~~~~~~~~~~~~lg-l~~l~~f~W~la-lGd~~Ls~eE 88 (141)
T PF12419_consen 11 LTTEEAYDFLTEAAPRLRAAGIGVLLPSWWKKVRRPRLRLRAKATSPGGSSQSFLG-LDQLLDFDWELA-LGDEELSEEE 88 (141)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCeEEcCHHHhhccCCCcEEEEEeccCCCCCCCccC-hHHHhcceEEEE-ECCEECCHHH
Confidence 6788899999998888887666555543221110 0 00000 012222222222 3788899999
Q ss_pred HHHHHHhcCCCeeE
Q 038113 84 LMTLVTGAGFGGIR 97 (112)
Q Consensus 84 ~~~ll~~aGf~~~~ 97 (112)
+.+++++.. ..++
T Consensus 89 f~~L~~~~~-~LV~ 101 (141)
T PF12419_consen 89 FEQLVEQKR-PLVR 101 (141)
T ss_pred HHHHHHcCC-CeEE
Confidence 999999765 4443
No 272
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=41.40 E-value=13 Score=25.59 Aligned_cols=21 Identities=14% Similarity=0.605 Sum_probs=18.8
Q ss_pred HHHHHHHHhhCCCCCEEEEEe
Q 038113 26 LKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~e 46 (112)
...++.++++|+|||.+++.-
T Consensus 171 ~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 171 REFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHhhcCCCcEEEEEc
Confidence 579999999999999998765
No 273
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=41.28 E-value=46 Score=21.46 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=31.9
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCeeEEEEeC
Q 038113 26 LKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFESFI 102 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 102 (112)
...++.+.+.|+++|.+.|.-.-.+ + ++.=+..++.+++||...+..+..
T Consensus 105 ~~Ff~Sa~~~L~~~G~IhVTl~~~~--p-------------------------y~~W~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 105 RGFFKSASQLLKPDGEIHVTLKDGQ--P-------------------------YDSWNIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCC--C-------------------------CccccHHHHHHhcCCEEEEEecCC
Confidence 4567778889999999988543221 1 111123466677888888877653
No 274
>PF13319 DUF4090: Protein of unknown function (DUF4090)
Probab=41.25 E-value=35 Score=19.33 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=20.9
Q ss_pred CceecCHHHHHHHHHhcCCCeeEEE
Q 038113 75 GGKERTKHELMTLVTGAGFGGIRFE 99 (112)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~~~~ 99 (112)
+.+..+.+++.+.|.+|||...+-.
T Consensus 55 GaKH~~q~~Lnq~L~~Ag~~~LK~K 79 (84)
T PF13319_consen 55 GAKHFDQEELNQRLIDAGWEGLKDK 79 (84)
T ss_pred ccccCCHHHHHHHHHHcCccccchh
Confidence 6677799999999999999876543
No 275
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=41.15 E-value=65 Score=18.07 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=20.1
Q ss_pred CCcccEEEe--ccccccCChHHHHHHHHHHHh
Q 038113 5 VAKGDAIYM--KWILHDWSDEHCLKLFKKCYK 34 (112)
Q Consensus 5 ~P~~D~v~~--~~vlh~~~d~~~~~iL~~~~~ 34 (112)
++.||.|+. ...+.-++.+++.++++-+.+
T Consensus 36 ~~vGD~VLVH~G~Ai~~ide~eA~e~l~~l~e 67 (76)
T TIGR00074 36 VKVGDYVLVHVGFAISVLDEEEARETLDALQE 67 (76)
T ss_pred CCCCCEEEEecChhhhhCCHHHHHHHHHHHHH
Confidence 344676554 447888888888777766554
No 276
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=41.09 E-value=51 Score=24.71 Aligned_cols=44 Identities=11% Similarity=0.243 Sum_probs=34.2
Q ss_pred CcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 038113 6 AKGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKL 52 (112)
Q Consensus 6 P~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~ 52 (112)
++++++++.|+. ++++...++= ++..-+++|.|++-.+...+..
T Consensus 271 ~eatvi~vNN~~--Fdp~L~lr~~-eil~~ck~gtrIiS~~~L~~r~ 314 (419)
T KOG3924|consen 271 TEATVIFVNNVA--FDPELKLRSK-EILQKCKDGTRIISSKPLVPRP 314 (419)
T ss_pred hcceEEEEeccc--CCHHHHHhhH-HHHhhCCCcceEeccccccccc
Confidence 457899999997 5555555554 8888899999999999888743
No 277
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=40.66 E-value=29 Score=24.22 Aligned_cols=54 Identities=17% Similarity=0.306 Sum_probs=36.2
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCeeE
Q 038113 18 HDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIR 97 (112)
Q Consensus 18 h~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 97 (112)
.||.......+.+++.+.++||+.+++++.. .. . ....++...|++.||+.+.
T Consensus 210 ~Dw~~~~~~~i~~~v~~~~~~G~IILmHd~~------~T-~--------------------~aL~~iI~~Lk~kGy~fvt 262 (268)
T TIGR02873 210 IDWKNPSPSVMVNRVLSKIHPGAMVLMHPTA------SS-T--------------------EGLEEMITIIKEKGYKIGT 262 (268)
T ss_pred CCCCCCCHHHHHHHHHhcCCCCcEEEEcCCc------cH-H--------------------HHHHHHHHHHHHCCCEEEe
Confidence 5776555678889998889998887776531 00 0 1244667778888888765
Q ss_pred E
Q 038113 98 F 98 (112)
Q Consensus 98 ~ 98 (112)
+
T Consensus 263 l 263 (268)
T TIGR02873 263 I 263 (268)
T ss_pred H
Confidence 4
No 278
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=40.55 E-value=71 Score=20.20 Aligned_cols=32 Identities=22% Similarity=0.442 Sum_probs=23.3
Q ss_pred cCHHHHHHHHHhcCCCeeEEE-------EeCCceEEEEEE
Q 038113 79 RTKHELMTLVTGAGFGGIRFE-------SFICNLWVMEFY 111 (112)
Q Consensus 79 rt~~e~~~ll~~aGf~~~~~~-------~~~~~~~vie~~ 111 (112)
-|++++-+|+..+| .+-+++ .++++++.||.+
T Consensus 48 ttEEqiyELFs~cG-~irriiMGLdr~kktpCGFCFVeyy 86 (153)
T KOG0121|consen 48 TTEEQIYELFSKCG-DIRRIIMGLDRFKKTPCGFCFVEYY 86 (153)
T ss_pred ecHHHHHHHHHhcc-chheeEeccccCCcCccceEEEEEe
Confidence 47899999999999 554443 235778888764
No 279
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=40.32 E-value=6.5 Score=26.95 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=13.8
Q ss_pred ecCHHHHHHHHHhcCCCeeE
Q 038113 78 ERTKHELMTLVTGAGFGGIR 97 (112)
Q Consensus 78 ~rt~~e~~~ll~~aGf~~~~ 97 (112)
.-+.+++.+..-++|-..++
T Consensus 142 ~~~~d~~~e~aIe~GaeDve 161 (234)
T PF01709_consen 142 DLDEDELMEDAIEAGAEDVE 161 (234)
T ss_dssp CS-HHHHHHHHHHHTESEEE
T ss_pred CCChHHHHHHHHhCCCcEee
Confidence 34677777777778877776
No 280
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=40.26 E-value=27 Score=17.83 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=12.1
Q ss_pred HHHHHhcCCCeeEEE
Q 038113 85 MTLVTGAGFGGIRFE 99 (112)
Q Consensus 85 ~~ll~~aGf~~~~~~ 99 (112)
.++|++.||+++.+-
T Consensus 24 ~r~L~~~G~~Vi~Ip 38 (58)
T PF08373_consen 24 HRHLKALGYKVISIP 38 (58)
T ss_pred HHHHHHCCCEEEEec
Confidence 578899999997763
No 281
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=40.09 E-value=62 Score=17.40 Aligned_cols=23 Identities=9% Similarity=-0.009 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCCCeeEEEEeCC
Q 038113 81 KHELMTLVTGAGFGGIRFESFIC 103 (112)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~ 103 (112)
...+.+|+++.|+++......++
T Consensus 39 ~~ni~~~~~~~g~~v~~~~~~~~ 61 (69)
T cd03422 39 INNIPIDARNHGYKVLAIEQSGP 61 (69)
T ss_pred HHHHHHHHHHcCCEEEEEEecCC
Confidence 55778899999999987666544
No 282
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=39.98 E-value=38 Score=16.01 Aligned_cols=18 Identities=11% Similarity=0.149 Sum_probs=14.8
Q ss_pred cCHHHHHHHHHhcCCCee
Q 038113 79 RTKHELMTLVTGAGFGGI 96 (112)
Q Consensus 79 rt~~e~~~ll~~aGf~~~ 96 (112)
.|.+++++||++.|....
T Consensus 4 Ws~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 4 WSDSDLKSWLKSHGIPVP 21 (38)
T ss_pred CCHHHHHHHHHHcCCCCC
Confidence 478899999999997654
No 283
>PRK05066 arginine repressor; Provisional
Probab=39.75 E-value=24 Score=22.70 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=17.8
Q ss_pred CceecCHHHHHHHHHhcCCC-ee
Q 038113 75 GGKERTKHELMTLVTGAGFG-GI 96 (112)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~-~~ 96 (112)
+....|.+|+.+.|++.||. +.
T Consensus 20 ~~~I~tQeeL~~~L~~~Gi~~vT 42 (156)
T PRK05066 20 EEKFGSQGEIVTALQEQGFDNIN 42 (156)
T ss_pred hCCCCCHHHHHHHHHHCCCCeec
Confidence 55667899999999999998 44
No 284
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=39.46 E-value=61 Score=17.67 Aligned_cols=28 Identities=14% Similarity=0.288 Sum_probs=17.4
Q ss_pred CCcccEEEec--cccccCChHHHHHHHHHH
Q 038113 5 VAKGDAIYMK--WILHDWSDEHCLKLFKKC 32 (112)
Q Consensus 5 ~P~~D~v~~~--~vlh~~~d~~~~~iL~~~ 32 (112)
++.||.++.. ..+.-++++++.++++-+
T Consensus 38 v~~Gd~VLVHaG~Ai~~ideeeA~e~l~~l 67 (68)
T PF01455_consen 38 VKVGDYVLVHAGFAIEKIDEEEAEETLDLL 67 (68)
T ss_dssp B-TT-EEEEETTEEEEEE-HHHHHHHHHHH
T ss_pred CCCCCEEEEecChhheeCCHHHHHHHHHHh
Confidence 4446765544 478888998888887653
No 285
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=39.30 E-value=39 Score=18.96 Aligned_cols=25 Identities=8% Similarity=0.259 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHhhCCCC-CEEEEEe
Q 038113 22 DEHCLKLFKKCYKSIPKD-GMVIIVE 46 (112)
Q Consensus 22 d~~~~~iL~~~~~aL~pg-g~l~i~e 46 (112)
+..+.++.+.+.+||..| |.|-+.|
T Consensus 19 ~~s~dev~~~v~~Al~~~~~~l~LtD 44 (74)
T PF11305_consen 19 DQSADEVEAAVTDALADGSGVLTLTD 44 (74)
T ss_pred CCCHHHHHHHHHHHHhCCCceEEEEe
Confidence 344568899999999998 7776655
No 286
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=39.01 E-value=1.1e+02 Score=20.10 Aligned_cols=21 Identities=5% Similarity=0.178 Sum_probs=16.6
Q ss_pred HhhCCCCCEEEEEeeecCCCC
Q 038113 33 YKSIPKDGMVIIVETILPKLP 53 (112)
Q Consensus 33 ~~aL~pgg~l~i~e~~~~~~~ 53 (112)
...+.+|-+++|+|-++....
T Consensus 116 ~g~~~~g~rVlIVDDVitTGg 136 (187)
T PRK13810 116 VGDLKPEDRIVMLEDVTTSGG 136 (187)
T ss_pred EccCCCcCEEEEEEeccCCCh
Confidence 456789999999998887543
No 287
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.00 E-value=40 Score=17.67 Aligned_cols=20 Identities=20% Similarity=0.291 Sum_probs=17.6
Q ss_pred ccccCChHHHHHHHHHHHhh
Q 038113 16 ILHDWSDEHCLKLFKKCYKS 35 (112)
Q Consensus 16 vlh~~~d~~~~~iL~~~~~a 35 (112)
+++++++++..++|+.+++.
T Consensus 5 l~~g~~~~el~~~l~~~r~~ 24 (58)
T PF12646_consen 5 LFSGFSGEELDKFLDALRKA 24 (58)
T ss_pred EECCCCHHHHHHHHHHHHHc
Confidence 56788999999999999987
No 288
>TIGR03473 HpnK hopanoid biosynthesis associated protein HpnK. The sequences represented by this model are members of the pfam04794 "YdjC-like" family of uncharacterized proteins. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0976) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnK) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopanoid biosynthesis locus was described consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a ph
Probab=39.00 E-value=72 Score=22.41 Aligned_cols=61 Identities=7% Similarity=-0.024 Sum_probs=34.2
Q ss_pred HHHHHHHhhCCCCCEEEEEeeecCCCCCCc--hhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCeeE
Q 038113 27 KLFKKCYKSIPKDGMVIIVETILPKLPETR--TLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIR 97 (112)
Q Consensus 27 ~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 97 (112)
+.+++..+.+++|+..+++.+-..+..-.. ... .....++.. .+..++++++++.|.+.+.
T Consensus 215 ~~~~~~l~~l~~g~~eimcHPg~~d~~l~~~s~~~-~~R~~E~~~---------L~sp~~~~~l~~~~I~Li~ 277 (283)
T TIGR03473 215 ARLLAALERLPEGVSEIYFHPATAQDAEITPSMPG-YRHADELAA---------LLSPRVKAALKELGITLGG 277 (283)
T ss_pred HHHHHHHHhCCCCcEEEEECCCCCChHhhccCCCC-CccHHHHHH---------HcCHHHHHHHHHCCCEEec
Confidence 567777788888877677665443321000 000 000111111 2567999999999977654
No 289
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=38.65 E-value=74 Score=22.25 Aligned_cols=70 Identities=13% Similarity=0.152 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhCC-CCCEEEEEeeecCCCCCCc-hhhhhhhh-hchhhhhcCCCceecCHH----HHHHHHHhcCCCeeE
Q 038113 25 CLKLFKKCYKSIP-KDGMVIIVETILPKLPETR-TLSKIISQ-GDVLMMTQNPGGKERTKH----ELMTLVTGAGFGGIR 97 (112)
Q Consensus 25 ~~~iL~~~~~aL~-pgg~l~i~e~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~g~~rt~~----e~~~ll~~aGf~~~~ 97 (112)
+.+-+.++.++|. |+|.++++-. .+.+. ...+.+.. .+...... .-.+.++.. +++.++.+||.+...
T Consensus 16 ai~hi~ri~RvL~~~~Gh~LLvG~----~GsGr~sl~rLaa~i~~~~~~~i-~~~~~y~~~~f~~dLk~~~~~ag~~~~~ 90 (268)
T PF12780_consen 16 AIEHIARISRVLSQPRGHALLVGV----GGSGRQSLARLAAFICGYEVFQI-EITKGYSIKDFKEDLKKALQKAGIKGKP 90 (268)
T ss_dssp HHHHHHHHHHHHCSTTEEEEEECT----TTSCHHHHHHHHHHHTTEEEE-T-TTSTTTHHHHHHHHHHHHHHHHHCS-S-
T ss_pred HHHHHHHHHHHHcCCCCCeEEecC----CCccHHHHHHHHHHHhccceEEE-EeeCCcCHHHHHHHHHHHHHHHhccCCC
Confidence 4455566666664 7888876542 22221 12222111 11111111 112334444 556777889988755
Q ss_pred EE
Q 038113 98 FE 99 (112)
Q Consensus 98 ~~ 99 (112)
+.
T Consensus 91 ~v 92 (268)
T PF12780_consen 91 TV 92 (268)
T ss_dssp EE
T ss_pred eE
Confidence 44
No 290
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=38.45 E-value=18 Score=15.80 Aligned_cols=11 Identities=18% Similarity=0.555 Sum_probs=8.7
Q ss_pred CCCCEEEEEee
Q 038113 37 PKDGMVIIVET 47 (112)
Q Consensus 37 ~pgg~l~i~e~ 47 (112)
.++|.++|.|.
T Consensus 10 ~~~g~i~VaD~ 20 (28)
T PF01436_consen 10 DSDGNIYVADS 20 (28)
T ss_dssp ETTSEEEEEEC
T ss_pred eCCCCEEEEEC
Confidence 37899999884
No 291
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=38.13 E-value=39 Score=23.39 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=17.2
Q ss_pred cCHHHHHHHHHhcCCCeeEEE
Q 038113 79 RTKHELMTLVTGAGFGGIRFE 99 (112)
Q Consensus 79 rt~~e~~~ll~~aGf~~~~~~ 99 (112)
.+++++.+.+-++|-..+...
T Consensus 147 ~~ed~l~e~~ieagaeDv~~~ 167 (241)
T COG0217 147 IDEDELLEAAIEAGAEDVEED 167 (241)
T ss_pred CCHHHHHHHHHHCCchhhhcC
Confidence 588999999999998877654
No 292
>PF15585 Imm46: Immunity protein 46
Probab=38.11 E-value=87 Score=19.57 Aligned_cols=38 Identities=13% Similarity=0.178 Sum_probs=24.5
Q ss_pred cEEEeccccccCCh---HHHHHHHHHHHhhCCCC--CEEEEEee
Q 038113 9 DAIYMKWILHDWSD---EHCLKLFKKCYKSIPKD--GMVIIVET 47 (112)
Q Consensus 9 D~v~~~~vlh~~~d---~~~~~iL~~~~~aL~pg--g~l~i~e~ 47 (112)
..++-...+++... ++...+++++.+. .|| |.|++-|-
T Consensus 51 ~~~l~~~g~~NHr~~~~~eii~lf~~i~e~-aPGSYGlLy~rDD 93 (129)
T PF15585_consen 51 SYFLHFGGLSNHRGQEAPEIIELFERIAEI-APGSYGLLYIRDD 93 (129)
T ss_pred cEEEEEccccCCCccchHHHHHHHHHHHHh-CCCceeEEEEecC
Confidence 34444445555443 4488999998874 566 77888764
No 293
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=38.00 E-value=16 Score=21.65 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=20.4
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeec
Q 038113 26 LKLFKKCYKSIPKDGMVIIVETIL 49 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~e~~~ 49 (112)
...++.+.+.|+++|+++++-...
T Consensus 69 ~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHHHhccCCEEEEEEccC
Confidence 358889999999999999987655
No 294
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=38.00 E-value=95 Score=24.14 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=34.4
Q ss_pred cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 038113 7 KGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 7 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
+||+|++--.-..++-.+...+-+-+++.++++-.++++|+
T Consensus 231 dADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEH 271 (591)
T COG1245 231 DADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEH 271 (591)
T ss_pred cCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEec
Confidence 46999988877778888888888888888888888888887
No 295
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=37.09 E-value=42 Score=24.24 Aligned_cols=33 Identities=30% Similarity=0.189 Sum_probs=24.3
Q ss_pred CceecCHHHHHHHHHhcCCCeeEEEEeCCceEEEE
Q 038113 75 GGKERTKHELMTLVTGAGFGGIRFESFICNLWVME 109 (112)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie 109 (112)
+-..+|..++..+++++||..+ ....+...++|
T Consensus 92 hLFiyTKp~~~~lFk~~GF~~i--~~~~~~ivlmE 124 (352)
T COG3053 92 HLFIYTKPEYAALFKQCGFSEI--ASAENVIVLME 124 (352)
T ss_pred eEEEEechhHHHHHHhCCceEe--eccCceEEEee
Confidence 3456799999999999999875 34445555555
No 296
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=36.99 E-value=57 Score=22.98 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCC---ceecCHHHHHHHHHhcCCCeeEEE
Q 038113 23 EHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPG---GKERTKHELMTLVTGAGFGGIRFE 99 (112)
Q Consensus 23 ~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~rt~~e~~~ll~~aGf~~~~~~ 99 (112)
|..+--|++..+.|+.+|.++|.|-..-+..... ..+++ ++.. -..+...++.++|.+.|-.+++..
T Consensus 115 E~~qwY~qRy~~~lPa~GeiviFdRSwYnr~gVe------RVmGf----ct~~q~~rfl~eip~FE~mL~~~Gi~l~Kfw 184 (270)
T COG2326 115 ERGQWYFQRYVAHLPAAGEIVIFDRSWYNRAGVE------RVMGF----CTPKQYKRFLREIPEFERMLVESGIILVKFW 184 (270)
T ss_pred hhccHHHHHHHHhCCCCCeEEEechhhccccCee------ecccc----CCHHHHHHHHHHhhHHHHHHHhCCeEEEEEE
Confidence 3367788999999999999999887655432211 01111 0100 112345688888888887777654
No 297
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.85 E-value=37 Score=19.54 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=20.9
Q ss_pred CceecCHHHHHHHHHhcCCCeeEE
Q 038113 75 GGKERTKHELMTLVTGAGFGGIRF 98 (112)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~~~ 98 (112)
+|..+...++++++++.|++....
T Consensus 6 GG~~~~~~~~~~~~~~~G~~~~~h 29 (97)
T PF10087_consen 6 GGREDRERRYKRILEKYGGKLIHH 29 (97)
T ss_pred cCCcccHHHHHHHHHHcCCEEEEE
Confidence 777888999999999999988765
No 298
>PRK12378 hypothetical protein; Provisional
Probab=36.84 E-value=63 Score=22.26 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=20.9
Q ss_pred cCChHHHHHHHHHHHh------------hCCCCCEEEEEeeecCCC
Q 038113 19 DWSDEHCLKLFKKCYK------------SIPKDGMVIIVETILPKL 52 (112)
Q Consensus 19 ~~~d~~~~~iL~~~~~------------aL~pgg~l~i~e~~~~~~ 52 (112)
++|.+-..+.+++... ...|||.-+|+|...+..
T Consensus 58 nmPkd~IerAIkk~~g~~~~~~~e~~YEgygPgGvaiiVe~lTDN~ 103 (235)
T PRK12378 58 NVPKDVIERAIKKAKGGGGEDYEEVRYEGFGPNGVMVIVECLTDNV 103 (235)
T ss_pred CCCHHHHHHHHHhccCCCCCceEEEEEEEEcCCCcEEEEEECCCCH
Confidence 4555555555555432 234889888988877653
No 299
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=36.84 E-value=72 Score=21.73 Aligned_cols=37 Identities=11% Similarity=0.365 Sum_probs=25.3
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPK 51 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~ 51 (112)
|++++ |-...+-...|..+.+.|+|||.+++ |.+...
T Consensus 134 DliFI-----DadK~~yp~~le~~~~lLr~GGliv~-DNvl~~ 170 (219)
T COG4122 134 DLVFI-----DADKADYPEYLERALPLLRPGGLIVA-DNVLFG 170 (219)
T ss_pred cEEEE-----eCChhhCHHHHHHHHHHhCCCcEEEE-eecccC
Confidence 66654 33444456789999999999998766 544443
No 300
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=36.83 E-value=58 Score=16.78 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=15.9
Q ss_pred cCHHHHHHHHHhcCCCeeEEE
Q 038113 79 RTKHELMTLVTGAGFGGIRFE 99 (112)
Q Consensus 79 rt~~e~~~ll~~aGf~~~~~~ 99 (112)
.+.++..+.|+++||......
T Consensus 9 ~~~~~a~~~l~~~g~~~~~~~ 29 (63)
T PF03793_consen 9 MTYDEAKSILEAAGLTVNVVE 29 (63)
T ss_dssp SBHHHHHHHHHHTT-EEEEEE
T ss_pred CcHHHHHHHHHHCCCEEEEEE
Confidence 578999999999999654443
No 301
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=36.83 E-value=65 Score=18.79 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=23.0
Q ss_pred CChHHHHHHHHHHHhhCCC-CCEEEEEee
Q 038113 20 WSDEHCLKLFKKCYKSIPK-DGMVIIVET 47 (112)
Q Consensus 20 ~~d~~~~~iL~~~~~aL~p-gg~l~i~e~ 47 (112)
.++++..+++.++.+.+.. ||.+.-+|.
T Consensus 18 l~e~~~~~~~~~~~~~i~~~gg~i~~~~~ 46 (97)
T CHL00123 18 LNEEELLKWIENYKKLLRKRGAKNISVQN 46 (97)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 5788899999999999976 677777665
No 302
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=36.32 E-value=63 Score=22.06 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=17.8
Q ss_pred CCceecCHHHHHHHHHhcCCCee
Q 038113 74 PGGKERTKHELMTLVTGAGFGGI 96 (112)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~~~ 96 (112)
.+|..++.+++.++++..|...+
T Consensus 202 a~GGv~s~~d~~~~~~~~G~~gv 224 (253)
T PRK02083 202 ASGGAGNLEHFVEAFTEGGADAA 224 (253)
T ss_pred EECCCCCHHHHHHHHHhCCccEE
Confidence 46778899999999888776544
No 303
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=36.09 E-value=51 Score=21.98 Aligned_cols=22 Identities=14% Similarity=-0.014 Sum_probs=17.6
Q ss_pred CHHHHHHHHHhcCCCeeEEEEe
Q 038113 80 TKHELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~ 101 (112)
..++|.+.|+++||+.......
T Consensus 29 A~~~Wn~~fe~~Gf~~a~~v~~ 50 (197)
T cd04276 29 GVLYWNKAFEKAGFKNAIIVKV 50 (197)
T ss_pred HHHHHHHHHHhcCCCccEEEEe
Confidence 4679999999999998765443
No 304
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=35.94 E-value=39 Score=13.93 Aligned_cols=12 Identities=17% Similarity=0.467 Sum_probs=8.0
Q ss_pred HHHHHHHhhCCC
Q 038113 27 KLFKKCYKSIPK 38 (112)
Q Consensus 27 ~iL~~~~~aL~p 38 (112)
.||++|..+.-|
T Consensus 4 eiL~~CI~sAmP 15 (20)
T PF05924_consen 4 EILQECIGSAMP 15 (20)
T ss_dssp HHHHHHHHCTS-
T ss_pred HHHHHHHHHhcc
Confidence 788888865444
No 305
>PRK06132 hypothetical protein; Provisional
Probab=35.80 E-value=42 Score=24.67 Aligned_cols=24 Identities=4% Similarity=0.123 Sum_probs=21.4
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeec
Q 038113 26 LKLFKKCYKSIPKDGMVIIVETIL 49 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~e~~~ 49 (112)
..+.+++...|.||+.|+|.|.-.
T Consensus 321 ~~~~~~i~~~l~~gssl~vsD~~~ 344 (359)
T PRK06132 321 PDFRRRIAALLTPGSTLVITDQGI 344 (359)
T ss_pred HHHHHHHHHhcCCCceEEEcCCCC
Confidence 368999999999999999999766
No 306
>PRK11018 hypothetical protein; Provisional
Probab=35.71 E-value=81 Score=17.47 Aligned_cols=23 Identities=4% Similarity=-0.067 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCCeeEEEEeCC
Q 038113 81 KHELMTLVTGAGFGGIRFESFIC 103 (112)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~ 103 (112)
...+.+|+++.|++++......+
T Consensus 48 ~~di~~~~~~~G~~v~~~~~~~g 70 (78)
T PRK11018 48 INNIPLDARNHGYTVLDIQQDGP 70 (78)
T ss_pred HHHHHHHHHHcCCEEEEEEecCC
Confidence 45778889999999987665443
No 307
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=35.54 E-value=41 Score=16.05 Aligned_cols=18 Identities=6% Similarity=0.194 Sum_probs=13.6
Q ss_pred cccccCChHHHHHHHHHH
Q 038113 15 WILHDWSDEHCLKLFKKC 32 (112)
Q Consensus 15 ~vlh~~~d~~~~~iL~~~ 32 (112)
+|+++.+.+++..|+.-+
T Consensus 17 ~Vfd~v~~~Ka~~im~lA 34 (36)
T PF06200_consen 17 CVFDDVPPDKAQEIMLLA 34 (36)
T ss_pred EEeCCCCHHHHHHHHHHh
Confidence 367778988888887643
No 308
>PRK13510 sulfur transfer complex subunit TusB; Provisional
Probab=35.47 E-value=40 Score=19.65 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=21.0
Q ss_pred cccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 038113 17 LHDWSDEHCLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 17 lh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
||.++...-..-|+.|.+.+.+|-.+++++-
T Consensus 2 Lhtv~~Sp~~~~l~~~l~~~~~~D~iLLieD 32 (95)
T PRK13510 2 LHTLSRSPWLTDFAALLRLLKEGDDLLLLQD 32 (95)
T ss_pred eeeecCCCchhHHHHHHHhcCCCCEEEEehH
Confidence 5555543333578889999999877777653
No 309
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=35.44 E-value=47 Score=23.99 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=18.7
Q ss_pred HHHHHHHHhhCCCCCEEEEEee
Q 038113 26 LKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
...++.+.+.|+++|+++++..
T Consensus 286 ~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 286 PDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred hHHHHHHHHHhccCCEEEEEcC
Confidence 4578888999999999999864
No 310
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=35.26 E-value=76 Score=24.39 Aligned_cols=37 Identities=5% Similarity=0.030 Sum_probs=27.9
Q ss_pred CcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 038113 6 AKGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 6 P~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
|.||+|++. .||++...+.+++.+.|+||..|....-
T Consensus 96 ~~ADvVviL-----lPDt~q~~v~~~i~p~LK~Ga~L~fsHG 132 (487)
T PRK05225 96 PQADLVINL-----TPDKQHSDVVRAVQPLMKQGAALGYSHG 132 (487)
T ss_pred HhCCEEEEc-----CChHHHHHHHHHHHhhCCCCCEEEecCC
Confidence 446877543 5776667788999999999998887764
No 311
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.04 E-value=39 Score=17.20 Aligned_cols=16 Identities=6% Similarity=0.094 Sum_probs=13.6
Q ss_pred CHHHHHHHHHhcCCCe
Q 038113 80 TKHELMTLVTGAGFGG 95 (112)
Q Consensus 80 t~~e~~~ll~~aGf~~ 95 (112)
+.+...+.|+++||+.
T Consensus 49 ~~~~~~~~L~~~G~~v 64 (65)
T cd04882 49 DIEKAIEVLQERGVEL 64 (65)
T ss_pred CHHHHHHHHHHCCceE
Confidence 3779999999999975
No 312
>PF10726 DUF2518: Protein of function (DUF2518); InterPro: IPR019664 This entry contains the Ycf51 protein family, which is conserved in Cyanobacteria. The function is not known.
Probab=34.65 E-value=53 Score=20.92 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=25.9
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEE
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMV 42 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l 42 (112)
|.++.. +=-++++++...-|++++.-|.++||.
T Consensus 81 ~~vVi~-v~~~i~~~~leaTL~QaA~nL~s~GR~ 113 (145)
T PF10726_consen 81 DQVVIA-VPPDITPEALEATLEQAASNLFSGGRS 113 (145)
T ss_pred cEEEEE-cCCCCCHHHHHHHHHHHHHhccccCcc
Confidence 555444 335789999999999999999998764
No 313
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=34.53 E-value=78 Score=16.93 Aligned_cols=26 Identities=12% Similarity=-0.064 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcCCCeeEEEEeCCceE
Q 038113 81 KHELMTLVTGAGFGGIRFESFICNLW 106 (112)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~~~~~~ 106 (112)
.+++.+|+++.|++.+.....++.+.
T Consensus 39 ~~di~~~~~~~g~~~~~~~~~~~~~~ 64 (69)
T cd03423 39 TRDIPKFCTFLGHELLAQETEDEPYR 64 (69)
T ss_pred HHHHHHHHHHcCCEEEEEEEcCCEEE
Confidence 55778888999999987766444333
No 314
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=34.50 E-value=1.3e+02 Score=20.10 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=17.6
Q ss_pred CCceecCHHHHHHHHHhcCCCeeEE
Q 038113 74 PGGKERTKHELMTLVTGAGFGGIRF 98 (112)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~~~~~ 98 (112)
.+|..++.++++++++ .|..-+-+
T Consensus 194 a~GGi~~~~di~~~~~-~Gadgv~i 217 (230)
T TIGR00007 194 ASGGVSSIDDLIALKK-LGVYGVIV 217 (230)
T ss_pred EeCCCCCHHHHHHHHH-CCCCEEEE
Confidence 3777889999998775 78665543
No 315
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.46 E-value=79 Score=20.94 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=27.4
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~ 45 (112)
|.++...++ +=|+--..+.+.|...|+|.|+-++.
T Consensus 105 DiIlaADCl--FfdE~h~sLvdtIk~lL~p~g~Al~f 139 (201)
T KOG3201|consen 105 DIILAADCL--FFDEHHESLVDTIKSLLRPSGRALLF 139 (201)
T ss_pred cEEEeccch--hHHHHHHHHHHHHHHHhCcccceeEe
Confidence 899888877 33455678999999999999986554
No 316
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=34.17 E-value=25 Score=24.15 Aligned_cols=76 Identities=11% Similarity=0.060 Sum_probs=45.2
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeee--cCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHH
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETI--LPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMT 86 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ 86 (112)
|+++ ..+- ..++++-++.|+..-|++||.++|+=-. .+... .+. -..++-.+
T Consensus 145 DvI~-~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~-~p~---------------------~vf~~e~~ 198 (229)
T PF01269_consen 145 DVIF-QDVA---QPDQARIAALNARHFLKPGGHLIISIKARSIDSTA-DPE---------------------EVFAEEVK 198 (229)
T ss_dssp EEEE-EE-S---STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSS-SHH---------------------HHHHHHHH
T ss_pred cEEE-ecCC---ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcC-CHH---------------------HHHHHHHH
Confidence 6653 3333 2356788899999999999999886321 22211 110 01223355
Q ss_pred HHHhcCCCeeEEEEeCC---ceEEEEE
Q 038113 87 LVTGAGFGGIRFESFIC---NLWVMEF 110 (112)
Q Consensus 87 ll~~aGf~~~~~~~~~~---~~~vie~ 110 (112)
.|++.||+..+...+.+ .+.++.+
T Consensus 199 ~L~~~~~~~~e~i~LePy~~dH~~vv~ 225 (229)
T PF01269_consen 199 KLKEEGFKPLEQITLEPYERDHAMVVG 225 (229)
T ss_dssp HHHCTTCEEEEEEE-TTTSTTEEEEEE
T ss_pred HHHHcCCChheEeccCCCCCCcEEEEE
Confidence 67778999999988854 4555544
No 317
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=33.98 E-value=48 Score=27.87 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.3
Q ss_pred CceecCHHHHHHHHHhcCCCeeE
Q 038113 75 GGKERTKHELMTLVTGAGFGGIR 97 (112)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~~ 97 (112)
+++.-|..|+..||+.|||+.-.
T Consensus 112 D~k~Vtk~evvnLLESAGFSrsN 134 (1200)
T KOG0964|consen 112 DNKMVTKGEVVNLLESAGFSRSN 134 (1200)
T ss_pred ccccccHHHHHHHHHhcCcccCC
Confidence 67888999999999999999753
No 318
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=33.97 E-value=51 Score=17.72 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=19.3
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 038113 18 HDWSDEHCLKLFKKCYKSIPKDGMVIIVETI 48 (112)
Q Consensus 18 h~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~ 48 (112)
..++.+++.++|++ -++.|..+|=...
T Consensus 4 g~isr~~Ae~~L~~----~~~~G~FLvR~s~ 30 (77)
T PF00017_consen 4 GFISRQEAERLLMQ----GKPDGTFLVRPSS 30 (77)
T ss_dssp ESSHHHHHHHHHHT----TSSTTEEEEEEES
T ss_pred CCCCHHHHHHHHHh----cCCCCeEEEEecc
Confidence 45667788899888 4567777776654
No 319
>COG1187 RsuA 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]
Probab=33.94 E-value=55 Score=22.77 Aligned_cols=24 Identities=13% Similarity=0.432 Sum_probs=20.1
Q ss_pred CceecCHHHHHHHHHhcCCCeeEEEEe
Q 038113 75 GGKERTKHELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (112)
.|+. -|+++++++.||++.+.+++
T Consensus 190 EGrn---rQVRRm~~a~G~~V~~L~R~ 213 (248)
T COG1187 190 EGRN---RQVRRMFEAVGLEVLRLKRI 213 (248)
T ss_pred CCcC---HHHHHHHHHcCCEEeEEEEE
Confidence 5553 48899999999999999876
No 320
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=33.89 E-value=1.2e+02 Score=22.54 Aligned_cols=45 Identities=7% Similarity=0.001 Sum_probs=28.2
Q ss_pred cccEEEecccc-ccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 038113 7 KGDAIYMKWIL-HDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPK 51 (112)
Q Consensus 7 ~~D~v~~~~vl-h~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~ 51 (112)
+||+|++.-+- -+-.+++....++++++.-+|+.++++.-++...
T Consensus 27 ~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~~~ivv~GC~a~~ 72 (420)
T PRK14339 27 EADLILINTCSVREKPVHKLFSEIGQFNKIKKEGAKIGVCGCTASH 72 (420)
T ss_pred cCCEEEEeccCccchHHHHHHHHHHHHHHhhCCCCeEEEECCcccc
Confidence 37999887643 2233455666666666556678887777765443
No 321
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=33.75 E-value=10 Score=26.26 Aligned_cols=34 Identities=15% Similarity=0.336 Sum_probs=26.0
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhC-CCCCEEEEEeeec
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSI-PKDGMVIIVETIL 49 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL-~pgg~l~i~e~~~ 49 (112)
|+|+ =|++++ -..+.++.++| +|||++.+.-+.+
T Consensus 115 Davf-----LDlp~P--w~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 115 DAVF-----LDLPDP--WEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp EEEE-----EESSSG--GGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred cEEE-----EeCCCH--HHHHHHHHHHHhcCCceEEEECCCH
Confidence 6654 377774 57899999999 8999998876544
No 322
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=33.70 E-value=91 Score=17.42 Aligned_cols=49 Identities=8% Similarity=0.110 Sum_probs=31.8
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCeeEEEEeCC
Q 038113 26 LKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFESFIC 103 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 103 (112)
.-.+++..+.|++|+.|.+. .++.. +..++..|.++.|.+.......++
T Consensus 23 ll~~kk~l~~l~~G~~l~V~---~dd~~--------------------------~~~di~~~~~~~G~~~~~~~~~~g 71 (81)
T PRK00299 23 VMMVRKTVRNMQPGETLLII---ADDPA--------------------------TTRDIPSFCRFMDHELLAQETEQL 71 (81)
T ss_pred HHHHHHHHHcCCCCCEEEEE---eCCcc--------------------------HHHHHHHHHHHcCCEEEEEEecCC
Confidence 45567777778888876552 22221 255778888899999887655444
No 323
>COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism]
Probab=33.67 E-value=40 Score=24.65 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.2
Q ss_pred CHHHHHHHHHhcCCCeeEEEE
Q 038113 80 TKHELMTLVTGAGFGGIRFES 100 (112)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~ 100 (112)
.++|++++++++||+++.-..
T Consensus 242 nE~evE~~~q~~G~~IVrPEt 262 (368)
T COG4421 242 NEEEVERLLQRSGLTIVRPET 262 (368)
T ss_pred CHHHHHHHHHhcCcEEEechh
Confidence 689999999999999987543
No 324
>TIGR03126 one_C_fae formaldehyde-activating enzyme. This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.
Probab=33.43 E-value=37 Score=21.98 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=19.5
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhh
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKS 35 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~a 35 (112)
|++++..|+-+|.-++-.+|.+.=|++
T Consensus 105 dl~Iiv~Vfi~p~a~D~~kiy~~NY~A 131 (160)
T TIGR03126 105 DLVIIVSVFIHPEAKDDRKIYKYNYEA 131 (160)
T ss_pred cEEEEEEEEeccccccHHHHHHHHHHH
Confidence 888888888888765566676665554
No 325
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=33.26 E-value=1.6e+02 Score=19.98 Aligned_cols=69 Identities=14% Similarity=0.068 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhch-hhhhcCCCceecCHHHHHHHHHhcCCCeeEE
Q 038113 25 CLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDV-LMMTQNPGGKERTKHELMTLVTGAGFGGIRF 98 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 98 (112)
..++++++.+. . +.+++.|.-......++..+........ .+-+ ..+|..++.++..++++ +|..-+-+
T Consensus 148 ~~~~~~~~~~~--~-~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipv-i~~GGi~s~edi~~l~~-~G~~~viv 217 (233)
T cd04723 148 PEELLRRLAKW--P-EELIVLDIDRVGSGQGPDLELLERLAARADIPV-IAAGGVRSVEDLELLKK-LGASGALV 217 (233)
T ss_pred HHHHHHHHHHh--C-CeEEEEEcCccccCCCcCHHHHHHHHHhcCCCE-EEeCCCCCHHHHHHHHH-cCCCEEEE
Confidence 45666666654 3 4677777655444443322211111111 1112 24788899999999987 68665543
No 326
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=32.76 E-value=70 Score=17.53 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=17.6
Q ss_pred cCHHHHHHHHHhcCCCeeEEE
Q 038113 79 RTKHELMTLVTGAGFGGIRFE 99 (112)
Q Consensus 79 rt~~e~~~ll~~aGf~~~~~~ 99 (112)
-+..|..+.|+.-||..++..
T Consensus 7 ~~~ke~ik~Le~~Gf~~vrqk 27 (66)
T COG1724 7 MKAKEVIKALEKDGFQLVRQK 27 (66)
T ss_pred CCHHHHHHHHHhCCcEEEEee
Confidence 367899999999999988653
No 327
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=32.45 E-value=82 Score=21.59 Aligned_cols=69 Identities=9% Similarity=0.137 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCeeEEE
Q 038113 24 HCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFE 99 (112)
Q Consensus 24 ~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 99 (112)
...-.|.+..+.|++.|.+.|.+-..-+..-. .+.....+-.-. ..+...-.++.+.|.+.|..++++.
T Consensus 73 ~~~p~lwRfw~~lP~~G~i~IF~rSwY~~~lv---~rv~~~~~~~~~----~~~~~~I~~FEr~L~~~G~~IlKff 141 (230)
T TIGR03707 73 RTQWYFQRYVQHLPAAGEIVLFDRSWYNRAGV---ERVMGFCTDEEY----EEFLRQVPEFERMLVRDGIHLFKYW 141 (230)
T ss_pred HcChHHHHHHHhCCCCCeEEEEeCchhhhHHH---HHhcCCCCHHHH----HHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 36677888888888888888887654433210 000000000000 1122245678888888898887764
No 328
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=32.35 E-value=1.6e+02 Score=19.94 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=25.2
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCC-CCEEEEEeeecCC
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPK-DGMVIIVETILPK 51 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p-gg~l~i~e~~~~~ 51 (112)
|+.+-..+...........+++.+.+.++. +=.+.=.|..+.+
T Consensus 7 Di~~~~~~~~~~~~~~~~~~~~~v~~~l~~aD~~~~NlE~~v~~ 50 (250)
T PF09587_consen 7 DIMLGRGVYQRAEKGGFDYIFEDVKPLLQSADLVVANLETPVTD 50 (250)
T ss_pred ccccCcchhhhcccCChHHHHHHHHHHHhhCCEEEEEeeecCcC
Confidence 555555554444322456788888888876 4445555666533
No 329
>smart00463 SMR Small MutS-related domain.
Probab=31.94 E-value=55 Score=17.95 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=18.6
Q ss_pred cccCChHHHHHHHHHHHhhCCCCC
Q 038113 17 LHDWSDEHCLKLFKKCYKSIPKDG 40 (112)
Q Consensus 17 lh~~~d~~~~~iL~~~~~aL~pgg 40 (112)
||.++-++|...|....+.+...+
T Consensus 6 LHG~~~~eA~~~l~~~l~~~~~~~ 29 (80)
T smart00463 6 LHGLTVEEALTALDKFLNNARLKG 29 (80)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHcC
Confidence 799998898888888777666544
No 330
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=31.46 E-value=62 Score=16.05 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=15.3
Q ss_pred cCHHHHHHHHHhcCCCee
Q 038113 79 RTKHELMTLVTGAGFGGI 96 (112)
Q Consensus 79 rt~~e~~~ll~~aGf~~~ 96 (112)
.+.+++.++.++.||...
T Consensus 27 ~~~~e~~~lA~~~Gy~ft 44 (49)
T PF07862_consen 27 QNPEEVVALAREAGYDFT 44 (49)
T ss_pred CCHHHHHHHHHHcCCCCC
Confidence 478999999999999864
No 331
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=31.42 E-value=62 Score=24.10 Aligned_cols=25 Identities=8% Similarity=0.081 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeec
Q 038113 25 CLKLFKKCYKSIPKDGMVIIVETIL 49 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~e~~~ 49 (112)
=..++..+.+.|+|||.++++-+..
T Consensus 315 y~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 315 YKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred HHHHHHHHHHHcCCCCEEEEEecCC
Confidence 4679999999999999999876533
No 332
>COG3870 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.41 E-value=87 Score=18.77 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=20.9
Q ss_pred CHHHHHHHHHhcCCCeeEEEEeCCc
Q 038113 80 TKHELMTLVTGAGFGGIRFESFICN 104 (112)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~~~~ 104 (112)
+..++.+-|.+.||+..+....+|+
T Consensus 12 da~~l~~~L~d~~fraTkLAsTGGF 36 (109)
T COG3870 12 DANELEDALTDKNFRATKLASTGGF 36 (109)
T ss_pred cHHHHHHHHHhCCceeEEeeccCce
Confidence 5678899999999999998887654
No 333
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=31.35 E-value=1.7e+02 Score=20.80 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=28.8
Q ss_pred EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE-eeecCCCCC
Q 038113 10 AIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIV-ETILPKLPE 54 (112)
Q Consensus 10 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~-e~~~~~~~~ 54 (112)
++-.+.++.+-++ ...++.+.+.++-..|..|++. |..+..-|.
T Consensus 22 ivQ~~t~~~dtpa-TL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYPr 66 (337)
T KOG0805|consen 22 IVQASTVYNDTPA-TLDKAEKYIVEAASKGAELVLFPEAFIGGYPR 66 (337)
T ss_pred EEEcccCCCCCHH-HHHHHHHHHHHHhcCCceEEEeehHhccCCCC
Confidence 4444556555443 3678888888888889998876 555555443
No 334
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=31.34 E-value=85 Score=18.60 Aligned_cols=21 Identities=5% Similarity=0.169 Sum_probs=17.7
Q ss_pred HHHHHHHhhCCCCCEEEEEee
Q 038113 27 KLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 27 ~iL~~~~~aL~pgg~l~i~e~ 47 (112)
..++++.+.|+||...++...
T Consensus 43 ~~~~ev~~~L~~GssAl~~lv 63 (102)
T PF06897_consen 43 EFIKEVGEALKPGSSALFLLV 63 (102)
T ss_pred HHHHHHHhhcCCCceEEEEEe
Confidence 589999999999988777654
No 335
>COG4309 Uncharacterized conserved protein [Function unknown]
Probab=31.30 E-value=89 Score=18.39 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=26.7
Q ss_pred CCCCCCcc--cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 038113 1 MFQNVAKG--DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 1 ~f~~~P~~--D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~ 45 (112)
||+++|.. |+- -.+..+...++=.....|++|..+-|+
T Consensus 1 m~~~~~s~~lD~R-------~~pPr~RH~~If~~~g~L~~Ge~leii 40 (98)
T COG4309 1 MFETQPSMSLDVR-------PIPPRERHPLIFSMLGKLKEGESLEII 40 (98)
T ss_pred CCCcccccccccc-------cCCchhhcchHHHHhcccCCCCceEee
Confidence 56777753 543 346666677777778899999988664
No 336
>PF03434 DUF276: DUF276 ; InterPro: IPR005096 This family is specific to Borrelia burgdorferi (Lyme disease spirochete). The protein is encoded on extrachromosomal DNA and is of unknown function.
Probab=31.30 E-value=54 Score=22.86 Aligned_cols=22 Identities=9% Similarity=0.235 Sum_probs=18.8
Q ss_pred ChHHHHHHHHHHHhhCCCCCEE
Q 038113 21 SDEHCLKLFKKCYKSIPKDGMV 42 (112)
Q Consensus 21 ~d~~~~~iL~~~~~aL~pgg~l 42 (112)
-++|....|...++.|+|||..
T Consensus 53 ie~eii~~ln~lFsk~K~~g~Y 74 (291)
T PF03434_consen 53 IEEEIINELNLLFSKMKPGGTY 74 (291)
T ss_pred HHHHHHHHHHHHHHhcCCCchH
Confidence 3577889999999999999865
No 337
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=31.27 E-value=1.3e+02 Score=19.81 Aligned_cols=35 Identities=14% Similarity=0.067 Sum_probs=20.8
Q ss_pred ccEEEeccccc-cCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 038113 8 GDAIYMKWILH-DWSDEHCLKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 8 ~D~v~~~~vlh-~~~d~~~~~iL~~~~~aL~pgg~l~i~e 46 (112)
.|++++.+.-. .+++++...+.+-+ +.||.++.+.
T Consensus 53 ~Dvvv~~~~~~~~l~~~~~~al~~~v----~~Ggglv~lH 88 (217)
T PF06283_consen 53 YDVVVFYNTGGDELTDEQRAALRDYV----ENGGGLVGLH 88 (217)
T ss_dssp -SEEEEE-SSCCGS-HHHHHHHHHHH----HTT-EEEEEG
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHH----HcCCCEEEEc
Confidence 49999888875 47776544444433 3588888877
No 338
>PRK09662 GspL-like protein; Provisional
Probab=31.14 E-value=44 Score=23.74 Aligned_cols=21 Identities=5% Similarity=0.066 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCCeeEEEEe
Q 038113 81 KHELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~ 101 (112)
...|.++|+++|++..+++|-
T Consensus 7 mq~wl~~l~~agl~~~~~vPD 27 (286)
T PRK09662 7 MRNIAQWLQANGITRATVAPD 27 (286)
T ss_pred HHHHHHHHHHcCCcceeecCC
Confidence 357999999999999998874
No 339
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=31.04 E-value=56 Score=20.42 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=19.9
Q ss_pred ccCChHHHHHHHHHHHhhCCCCC
Q 038113 18 HDWSDEHCLKLFKKCYKSIPKDG 40 (112)
Q Consensus 18 h~~~d~~~~~iL~~~~~aL~pgg 40 (112)
-|..|++..+++..+.++|.+++
T Consensus 109 ~D~~~edv~kv~~~i~e~l~~~~ 131 (135)
T COG4273 109 SDCKDEDVEKVARTIKEALTIKL 131 (135)
T ss_pred CCCCHHHHHHHHHHHHHHhhhcc
Confidence 36778999999999999999864
No 340
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=31.01 E-value=56 Score=20.83 Aligned_cols=18 Identities=22% Similarity=0.219 Sum_probs=15.3
Q ss_pred HHHHHHHHhcCCCeeEEE
Q 038113 82 HELMTLVTGAGFGGIRFE 99 (112)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~ 99 (112)
.+|.+.+++.||++..+.
T Consensus 40 ~~w~~~mk~~Gf~Vk~~~ 57 (149)
T COG3019 40 DEWAQHMKANGFEVKVVE 57 (149)
T ss_pred HHHHHHHHhCCcEEEEee
Confidence 589999999999987654
No 341
>PF01887 SAM_adeno_trans: S-adenosyl-l-methionine hydroxide adenosyltransferase; InterPro: IPR002747 The S-adenosyl-L-methionine (SAM) hydroxide adenosyltransferase family groups several fluorinase and chlorinase enzymes whose common feature is that they mediate nucleophilic reactions of their respective halide ions to the C-5' carbon of SAM []. These enzymes utilise a rigorously conserved amino acid side chain triad (Asp-Arg-His) which may have a role in activating water to hydroxide ion. Structural studies indicate that the protein is a homotrimer, with each monomer being composed of N- and C-terminal domains [, ]. The N-terminal domain has a central seven-stranded beta-sheet, which combines parallel and antiparallel strands sandwiched between alpha helices. The C-terminal domain forms a beta-barrel with a greek-key topology. SAM is bound at the interface between the C-terminal domain of one monomer and the N-terminal domain of the neighbouring monomer, with a total of three molecules bound by the trimer.; PDB: 2CW5_C 1WU8_C 2WR8_A 2Q6O_B 2Q6L_A 2Q6K_A 2Q6I_A 2V7T_B 2C4U_F 1RQP_C ....
Probab=30.99 E-value=1.6e+02 Score=20.52 Aligned_cols=47 Identities=9% Similarity=0.184 Sum_probs=31.3
Q ss_pred CcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEE-EEeeecCCC
Q 038113 6 AKGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVI-IVETILPKL 52 (112)
Q Consensus 6 P~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~-i~e~~~~~~ 52 (112)
|++.++=++|-+--++-.++.-+|+.+++..++|...+ ++|+-...+
T Consensus 27 P~~~IvDitH~i~pf~i~~aA~~L~~a~~~fP~gtvhl~vVDPgVGt~ 74 (258)
T PF01887_consen 27 PDARIVDITHEIPPFDIRQAAFILAQAYPYFPKGTVHLAVVDPGVGTE 74 (258)
T ss_dssp TTSEEEEEES-S-TT-HHHHHHHHHHHHGGS-TTEEEEEE--TTTTSS
T ss_pred cCCeEEEeeCCCCCCCHHHHHHHHHHHHhhCCCCCEEEEEECCCCCCC
Confidence 66778878888778888889999999999999987544 445544433
No 342
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=30.46 E-value=2.2e+02 Score=20.92 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=22.1
Q ss_pred CChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 038113 20 WSDEHCLKLFKKCYKSIPKDGMVIIVETI 48 (112)
Q Consensus 20 ~~d~~~~~iL~~~~~aL~pgg~l~i~e~~ 48 (112)
+.+++...-++++.++....|-.++++..
T Consensus 76 ~~~~~~i~~~k~l~davh~~G~~i~~QL~ 104 (382)
T cd02931 76 YNPTAFIRTAKEMTERVHAYGTKIFLQLT 104 (382)
T ss_pred cCCHHHhHHHHHHHHHHHHcCCEEEEEcc
Confidence 44555788999999999987777777754
No 343
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=30.27 E-value=1.2e+02 Score=20.67 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=10.9
Q ss_pred ecCHHHHHHHHHhcCCCeeE
Q 038113 78 ERTKHELMTLVTGAGFGGIR 97 (112)
Q Consensus 78 ~rt~~e~~~ll~~aGf~~~~ 97 (112)
..+.+.+.++|++.||++..
T Consensus 29 ~~D~~~l~~~f~~lgF~V~~ 48 (241)
T smart00115 29 DVDAENLTELFQSLGYEVHV 48 (241)
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 34555556666666665543
No 344
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=30.15 E-value=97 Score=21.76 Aligned_cols=68 Identities=10% Similarity=0.028 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCeeEEE
Q 038113 25 CLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFE 99 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 99 (112)
..-.|-+..+.|++.|.+.|.+-..-+..... +.....+-.- ...+......+.+.|.+.|..++++.
T Consensus 99 ~~p~lWRfw~~lP~~G~i~IF~RSWY~~vl~~---rv~g~~~~~~----~~~~~~~I~~FEr~L~~~G~~IiKff 166 (264)
T TIGR03709 99 DHDFLWRIHKALPERGEIGIFNRSHYEDVLVV---RVHGLIPKAI----WERRYEDINDFERYLTENGTTILKFF 166 (264)
T ss_pred cCchHHHHHHhCCCCCeEEEEcCccccchhhh---hhcCCCCHHH----HHHHHHHHHHHHHHHHHCCcEEEEEE
Confidence 56678888888888888888876554432110 0000000000 01122345678888888888887764
No 345
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=30.14 E-value=1.6e+02 Score=20.43 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=18.2
Q ss_pred HHHHHHHhhCCCCCEEEEEeeec
Q 038113 27 KLFKKCYKSIPKDGMVIIVETIL 49 (112)
Q Consensus 27 ~iL~~~~~aL~pgg~l~i~e~~~ 49 (112)
..++...++|+++|+++.+-...
T Consensus 245 ~~~~~~~~~l~~~G~~v~~g~~~ 267 (306)
T cd08258 245 PALEQALELLRKGGRIVQVGIFG 267 (306)
T ss_pred HHHHHHHHHhhcCCEEEEEcccC
Confidence 46777888899999999876644
No 346
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=30.04 E-value=49 Score=20.34 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHhhCCCCCEEEEEee
Q 038113 22 DEHCLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 22 d~~~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
.+...+..+.+.+++..||+|+++-.
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~~G~ 43 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFVCGN 43 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEEES
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 34567777788888889999999875
No 347
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.95 E-value=49 Score=17.28 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=13.0
Q ss_pred CHHHHHHHHHhcCCCe
Q 038113 80 TKHELMTLVTGAGFGG 95 (112)
Q Consensus 80 t~~e~~~ll~~aGf~~ 95 (112)
..+...+.|+++||++
T Consensus 54 ~~~~~~~~L~~~G~~v 69 (69)
T cd04909 54 DRERAKEILKEAGYEV 69 (69)
T ss_pred HHHHHHHHHHHcCCcC
Confidence 3568899999999964
No 348
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=29.89 E-value=89 Score=21.60 Aligned_cols=35 Identities=14% Similarity=0.321 Sum_probs=23.7
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETIL 49 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~ 49 (112)
|++++= -+.+.-...+..+.+.|+|||.+++ |.+.
T Consensus 158 D~iFiD-----adK~~Y~~y~~~~l~ll~~GGviv~-DNvl 192 (247)
T PLN02589 158 DFIFVD-----ADKDNYINYHKRLIDLVKVGGVIGY-DNTL 192 (247)
T ss_pred cEEEec-----CCHHHhHHHHHHHHHhcCCCeEEEE-cCCC
Confidence 666543 2344466788888999999998655 5443
No 349
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=29.87 E-value=72 Score=17.43 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=15.4
Q ss_pred HHHHHHHHhcCCCeeEEE
Q 038113 82 HELMTLVTGAGFGGIRFE 99 (112)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~ 99 (112)
..+++-|+++||+.+++.
T Consensus 6 ~khR~~lRa~GLRPVqiW 23 (65)
T PF11455_consen 6 RKHRERLRAAGLRPVQIW 23 (65)
T ss_pred HHHHHHHHHcCCCcceee
Confidence 467888999999999886
No 350
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=29.78 E-value=28 Score=24.69 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhCCCCCEEEEEee
Q 038113 25 CLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
-.++++.+.+.|+|||.|+.+-+
T Consensus 217 y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 217 YKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEE-
T ss_pred HHHHHHHHHHhcCCCCEEEEEcC
Confidence 46799999999999999887654
No 351
>KOG2972 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.56 E-value=52 Score=23.06 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=12.5
Q ss_pred HhhCCCCCEEEEEeeecCC
Q 038113 33 YKSIPKDGMVIIVETILPK 51 (112)
Q Consensus 33 ~~aL~pgg~l~i~e~~~~~ 51 (112)
++++.|||.-+|+|...+.
T Consensus 114 ye~~gp~GV~liVealTdn 132 (276)
T KOG2972|consen 114 YEAMGPSGVGLIVEALTDN 132 (276)
T ss_pred EeeecCCceEEEEEeeecc
Confidence 4566677777777766554
No 352
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=29.42 E-value=47 Score=18.65 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=15.6
Q ss_pred cCHHHHHHHHHhcCCCeeEEE
Q 038113 79 RTKHELMTLVTGAGFGGIRFE 99 (112)
Q Consensus 79 rt~~e~~~ll~~aGf~~~~~~ 99 (112)
--..++.++|+..||+..+.-
T Consensus 16 GlA~~~a~~L~~~Gf~v~~~~ 36 (90)
T PF13399_consen 16 GLAARVADALRNRGFTVVEVG 36 (90)
T ss_pred CHHHHHHHHHHHCCCceeecC
Confidence 345688888888898886653
No 353
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=29.37 E-value=71 Score=23.71 Aligned_cols=22 Identities=5% Similarity=0.125 Sum_probs=17.6
Q ss_pred HHHHHHHHhhCCCCCEEEEEee
Q 038113 26 LKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
..+++.+.+.|+|||.++.+.+
T Consensus 319 ~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 319 KDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred HHHHHHHHHHcCCCeEEEEEeC
Confidence 4566778899999999988653
No 354
>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....
Probab=29.09 E-value=51 Score=17.30 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=14.0
Q ss_pred cCHHHHHHHHHhcCCCeeE
Q 038113 79 RTKHELMTLVTGAGFGGIR 97 (112)
Q Consensus 79 rt~~e~~~ll~~aGf~~~~ 97 (112)
--.++|+.+|..+|.+..+
T Consensus 25 glp~ew~~~l~~~~it~~~ 43 (59)
T PF00786_consen 25 GLPPEWEKLLKSSGITEEE 43 (59)
T ss_dssp S--HHHHHHHHSCTTSHHH
T ss_pred cCCHHHHhhccccCCCHHH
Confidence 4578999999999987543
No 355
>PRK14755 transcriptional regulatory protein PufK; Provisional
Probab=28.97 E-value=26 Score=14.93 Aligned_cols=13 Identities=8% Similarity=0.146 Sum_probs=8.3
Q ss_pred HHHHhhCCCCCEE
Q 038113 30 KKCYKSIPKDGMV 42 (112)
Q Consensus 30 ~~~~~aL~pgg~l 42 (112)
+++...|++||..
T Consensus 10 qhvasvlrsgg~~ 22 (26)
T PRK14755 10 QHVASVLRSGGXX 22 (26)
T ss_pred HHHHHHHHcCCcc
Confidence 4556677777754
No 356
>PF11432 DUF3197: Protein of unknown function (DUF3197); InterPro: IPR024443 This domain, whose function is unknown, is found in bacterial proteins.; PDB: 1WN9_A 1WNA_A.
Probab=28.87 E-value=1.2e+02 Score=18.29 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=16.1
Q ss_pred ceecCHHHHHHHHHhcCCCeeE
Q 038113 76 GKERTKHELMTLVTGAGFGGIR 97 (112)
Q Consensus 76 g~~rt~~e~~~ll~~aGf~~~~ 97 (112)
+..+...|+..|+.+.|.+..+
T Consensus 57 ~G~~ALaELv~wl~~~G~~f~E 78 (113)
T PF11432_consen 57 EGERALAELVRWLQERGARFYE 78 (113)
T ss_dssp THHHHHHHHHHHHHHTT-EEEE
T ss_pred cHHHHHHHHHHHHHHcCCchhh
Confidence 4456788999999999984433
No 357
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=28.74 E-value=92 Score=21.89 Aligned_cols=72 Identities=7% Similarity=0.037 Sum_probs=39.4
Q ss_pred ccccCChHHHHHHHHHHHhhCCCC-CEEEEEeeecCCCCCCchhhhh---hhhhchhhhhcCCCceecCHHHHHHHHHh
Q 038113 16 ILHDWSDEHCLKLFKKCYKSIPKD-GMVIIVETILPKLPETRTLSKI---ISQGDVLMMTQNPGGKERTKHELMTLVTG 90 (112)
Q Consensus 16 vlh~~~d~~~~~iL~~~~~aL~pg-g~l~i~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~rt~~e~~~ll~~ 90 (112)
..|.|.......+..-+.+.+..| +.+++.+.-.+....++..+.. .....+.. ...|...+.+++.++.+.
T Consensus 153 a~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G~d~el~~~l~~~~~ipV---IASGGv~sleDi~~L~~~ 228 (262)
T PLN02446 153 VTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLGIDEELVALLGEHSPIPV---TYAGGVRSLDDLERVKVA 228 (262)
T ss_pred EECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccCCCHHHHHHHHhhCCCCE---EEECCCCCHHHHHHHHHc
Confidence 567786533223333233333334 7788888777665555433222 22222222 235677899999999774
No 358
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=28.72 E-value=59 Score=20.83 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=20.0
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEE
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVI 43 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~ 43 (112)
+|++++..+ -..++++..+-+++..+.++|+.+++
T Consensus 143 ADvIvlnK~-D~~~~~~~i~~~~~~ir~lnp~a~Iv 177 (178)
T PF02492_consen 143 ADVIVLNKI-DLVSDEQKIERVREMIRELNPKAPIV 177 (178)
T ss_dssp -SEEEEE-G-GGHHHH--HHHHHHHHHHH-TTSEEE
T ss_pred cCEEEEecc-ccCChhhHHHHHHHHHHHHCCCCEEe
Confidence 588888886 22334434366667777788888775
No 359
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=28.69 E-value=1.6e+02 Score=18.84 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=11.6
Q ss_pred hCCCCCEEEEEeeecCCC
Q 038113 35 SIPKDGMVIIVETILPKL 52 (112)
Q Consensus 35 aL~pgg~l~i~e~~~~~~ 52 (112)
.+.+|-+++|+|-+....
T Consensus 104 ~~~~g~~VlIVDDvi~TG 121 (173)
T TIGR00336 104 ELLEGDKVVVVEDVITTG 121 (173)
T ss_pred CCCCCCEEEEEeccccCh
Confidence 455677777777666543
No 360
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=28.68 E-value=1e+02 Score=21.91 Aligned_cols=41 Identities=12% Similarity=0.259 Sum_probs=24.7
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCC---CCCEEEEEeeecCCCC
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIP---KDGMVIIVETILPKLP 53 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~---pgg~l~i~e~~~~~~~ 53 (112)
.|+++..++= +.++ .+.+.++.+++| |. .++++|++.++..
T Consensus 74 ~davltGYlg---s~~q-v~~i~~~v~~vk~~~P~-~~~l~DPVMGD~g 117 (281)
T COG2240 74 CDAVLTGYLG---SAEQ-VRAIAGIVKAVKEANPN-ALYLCDPVMGDPG 117 (281)
T ss_pred cCEEEEccCC---CHHH-HHHHHHHHHHHhccCCC-eEEEeCCcccCCC
Confidence 4888877764 2333 333333333333 44 6789999998875
No 361
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=28.55 E-value=55 Score=16.74 Aligned_cols=16 Identities=13% Similarity=0.418 Sum_probs=13.6
Q ss_pred cCHHHHHHHHHhcCCC
Q 038113 79 RTKHELMTLVTGAGFG 94 (112)
Q Consensus 79 rt~~e~~~ll~~aGf~ 94 (112)
.+.+++.+.++++||+
T Consensus 47 ~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 47 TSIEKIIEAIEKAGYE 62 (62)
T ss_dssp SCHHHHHHHHHHTTSE
T ss_pred CCHHHHHHHHHHhCcC
Confidence 4678999999999984
No 362
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=28.51 E-value=1.6e+02 Score=23.44 Aligned_cols=43 Identities=19% Similarity=0.191 Sum_probs=28.8
Q ss_pred CcccEEEecccccc----CC-h-HHHHHHHHHHHhhCCCCCEEEEEeee
Q 038113 6 AKGDAIYMKWILHD----WS-D-EHCLKLFKKCYKSIPKDGMVIIVETI 48 (112)
Q Consensus 6 P~~D~v~~~~vlh~----~~-d-~~~~~iL~~~~~aL~pgg~l~i~e~~ 48 (112)
|..|+.++-....+ .+ . +...++++.+.++++.||+++|--+.
T Consensus 363 ~~vD~LI~ESTYg~~~~~~~~r~~~e~~l~~~I~~tl~~gG~VLIP~fa 411 (630)
T TIGR03675 363 PRVETLIMESTYGGRDDYQPSREEAEKELIKVVNETIKRGGKVLIPVFA 411 (630)
T ss_pred CCCCEEEEeCccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEech
Confidence 44588888654432 22 2 22456888888999999999986543
No 363
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=28.43 E-value=2.1e+02 Score=20.09 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=21.1
Q ss_pred CceecCHHHHHHHHHhcCCCeeEEEEe
Q 038113 75 GGKERTKHELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (112)
++...+..++++++++.+...++....
T Consensus 234 ~E~~~~~~~~~~~~~~~~~d~v~~~~~ 260 (316)
T cd03319 234 DESCFSAADAARLAGGGAYDGINIKLM 260 (316)
T ss_pred eCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 556778899999999888887776544
No 364
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=28.41 E-value=25 Score=24.41 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeec
Q 038113 25 CLKLFKKCYKSIPKDGMVIIVETIL 49 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~e~~~ 49 (112)
....|..++..|.|||.|++-|...
T Consensus 191 T~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 191 TKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp HHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred HHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 5789999999999999998866433
No 365
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=28.41 E-value=93 Score=15.88 Aligned_cols=35 Identities=11% Similarity=0.304 Sum_probs=24.1
Q ss_pred ccccCChHHHHHHHHHHHhhCC------CCCEEEEEeeecC
Q 038113 16 ILHDWSDEHCLKLFKKCYKSIP------KDGMVIIVETILP 50 (112)
Q Consensus 16 vlh~~~d~~~~~iL~~~~~aL~------pgg~l~i~e~~~~ 50 (112)
++...++++..++++.+.+++. ++...++++.+.+
T Consensus 8 ~~~Grs~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e~~~ 48 (61)
T PRK02220 8 LIEGRTEEQLKALVKDVTAAVSKNTGAPAEHIHVIINEMSK 48 (61)
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEeCh
Confidence 4456788999999999998776 3455555554443
No 366
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=28.37 E-value=60 Score=16.96 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=13.4
Q ss_pred CHHHHHHHHHhcCCCe
Q 038113 80 TKHELMTLVTGAGFGG 95 (112)
Q Consensus 80 t~~e~~~ll~~aGf~~ 95 (112)
+.+...+.|+++||++
T Consensus 49 ~~~~~~~~L~~~G~~v 64 (66)
T cd04908 49 DPDKAKEALKEAGFAV 64 (66)
T ss_pred CHHHHHHHHHHCCCEE
Confidence 4668899999999985
No 367
>PF09572 RE_XamI: XamI restriction endonuclease; InterPro: IPR019072 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the XamI restriction endonuclease which recognises GTCGAC but cleavage site unknown. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=28.36 E-value=83 Score=21.94 Aligned_cols=74 Identities=11% Similarity=0.089 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhc-----CCCce-ecCHHHHHHHHHhcCCCe
Q 038113 22 DEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQ-----NPGGK-ERTKHELMTLVTGAGFGG 95 (112)
Q Consensus 22 d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~-~rt~~e~~~ll~~aGf~~ 95 (112)
|++..+|++-+.+.|.|+=...+-+.-.|.+ ....+.+....-.+... ..+.. .|-++.+++||++.||+.
T Consensus 64 ~~~l~kI~~iI~~llDp~~FpWl~~~~~Pt~---~Ei~~aA~ivadrL~~avA~piiRnaqErRQe~~i~~~L~~~GYt~ 140 (251)
T PF09572_consen 64 DEELQKICDIIEKLLDPDRFPWLGRGRAPTE---EEIERAATIVADRLCGAVADPIIRNAQERRQEAAIAEWLEARGYTK 140 (251)
T ss_pred HHHHHHHHHHHHHhcCcccccccCCCCCCCH---HHHHHHHHHHHHHHHhhhcchHHHhHHHHHHHHHHHHHHHhcCceE
Confidence 4567888888888888884333322222211 11110011111111110 11333 335678999999999997
Q ss_pred eEE
Q 038113 96 IRF 98 (112)
Q Consensus 96 ~~~ 98 (112)
+.-
T Consensus 141 ~~~ 143 (251)
T PF09572_consen 141 VPG 143 (251)
T ss_pred ccc
Confidence 653
No 368
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=28.06 E-value=73 Score=18.69 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=17.4
Q ss_pred cCHHHHHHHHHhcCCCeeEEE
Q 038113 79 RTKHELMTLVTGAGFGGIRFE 99 (112)
Q Consensus 79 rt~~e~~~ll~~aGf~~~~~~ 99 (112)
.+.+|+++|.+.+|++++...
T Consensus 8 ~~l~El~~L~~t~g~~vv~~~ 28 (95)
T PF13167_consen 8 ESLEELEELAETAGYEVVGTV 28 (95)
T ss_pred HHHHHHHHHHHHCCCeEEEEE
Confidence 357899999999999988644
No 369
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=27.90 E-value=59 Score=23.12 Aligned_cols=74 Identities=9% Similarity=-0.009 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeee-------cCCCCCCchhhh-hhhhhch------hhhhcCCCceecCHHHHHHHHHh
Q 038113 25 CLKLFKKCYKSIPKDGMVIIVETI-------LPKLPETRTLSK-IISQGDV------LMMTQNPGGKERTKHELMTLVTG 90 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~e~~-------~~~~~~~~~~~~-~~~~~~~------~~~~~~~~g~~rt~~e~~~ll~~ 90 (112)
.......+.++++.||||+-+-.- .+-..-+|.+.- ......+ .+.. ..+|-+-+.+.=.+-+++
T Consensus 46 Ia~Av~~~~~~l~~GGRLiY~GAGTSGRLGvlDAsEcPPTfgv~~e~ViglIAGG~~A~~~-avEGaED~~~~g~~dl~~ 124 (298)
T COG2103 46 IAAAVDIIAAALKQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVIGLIAGGEEAILK-AVEGAEDDEELGEADLKN 124 (298)
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCCcccchhccchhhCCCCcCCChhHeeeeecCCHHHHHH-hhcCccccHHHHHHHHHH
Confidence 455677788899999999876531 111100111000 0000000 1111 125566677777888888
Q ss_pred cCCCeeEEE
Q 038113 91 AGFGGIRFE 99 (112)
Q Consensus 91 aGf~~~~~~ 99 (112)
.|++..++.
T Consensus 125 ~~lt~~Dvv 133 (298)
T COG2103 125 IGLTAKDVV 133 (298)
T ss_pred cCCCcCCEE
Confidence 888866553
No 370
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=27.84 E-value=49 Score=16.25 Aligned_cols=14 Identities=36% Similarity=0.494 Sum_probs=10.5
Q ss_pred HHHHHHHhcCCCee
Q 038113 83 ELMTLVTGAGFGGI 96 (112)
Q Consensus 83 e~~~ll~~aGf~~~ 96 (112)
++.+.|..|||..+
T Consensus 2 e~a~Rl~~AgF~~i 15 (41)
T PF11590_consen 2 ETAERLRSAGFATI 15 (41)
T ss_dssp HHHHHHHHTT-EEE
T ss_pred hHHHHHHHHhHHHh
Confidence 67788899999875
No 371
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=27.80 E-value=36 Score=23.01 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=21.1
Q ss_pred ccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 038113 16 ILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPK 51 (112)
Q Consensus 16 vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~ 51 (112)
.=|.... ..+.|+.....+++|+.++|-|+....
T Consensus 119 s~H~~~h--vl~eL~~y~plv~~G~Y~IVeDt~~~~ 152 (206)
T PF04989_consen 119 SSHTHEH--VLAELEAYAPLVSPGSYLIVEDTIIED 152 (206)
T ss_dssp S----SS--HHHHHHHHHHT--TT-EEEETSHHHHH
T ss_pred CCccHHH--HHHHHHHhCccCCCCCEEEEEeccccc
Confidence 3344444 678888899999999999998887654
No 372
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=27.72 E-value=2.5e+02 Score=20.68 Aligned_cols=86 Identities=16% Similarity=0.215 Sum_probs=43.2
Q ss_pred ccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhc----CCCceecCHHHHHHHH---
Q 038113 16 ILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQ----NPGGKERTKHELMTLV--- 88 (112)
Q Consensus 16 vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~rt~~e~~~ll--- 88 (112)
..--|+|++ ..-++++.+++...|-.+++...-...............+.-..... ...-++.|.+|+.++.
T Consensus 73 ~~~l~~d~~-i~~~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f 151 (363)
T COG1902 73 QPGLWSDAQ-IPGLKRLTEAVHAHGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDF 151 (363)
T ss_pred CCccCChhH-hHHHHHHHHHHHhcCCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHH
Confidence 333466665 78899999999875555555543332110000000000000000000 1123555777766554
Q ss_pred -------HhcCCCeeEEEEeC
Q 038113 89 -------TGAGFGGIRFESFI 102 (112)
Q Consensus 89 -------~~aGf~~~~~~~~~ 102 (112)
++|||..++++--.
T Consensus 152 ~~AA~rA~~AGFDgVEIH~Ah 172 (363)
T COG1902 152 ARAARRAKEAGFDGVEIHGAH 172 (363)
T ss_pred HHHHHHHHHcCCCEEEEeecc
Confidence 57999999998543
No 373
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=27.64 E-value=2e+02 Score=19.72 Aligned_cols=57 Identities=9% Similarity=0.038 Sum_probs=31.6
Q ss_pred CEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHH--HHhcCCCee
Q 038113 40 GMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTL--VTGAGFGGI 96 (112)
Q Consensus 40 g~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l--l~~aGf~~~ 96 (112)
+.+++.+.-.+....++..+................|..++.+++.++ +.+.|...+
T Consensus 164 ~~ii~tdI~~dGt~~G~d~~l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gv 222 (243)
T TIGR01919 164 SRVVVTDSKKDGLSGGPNELLLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEGGVSVA 222 (243)
T ss_pred CEEEEEecCCcccCCCcCHHHHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccCCeeEE
Confidence 678887776666555543322211121111111236778899999988 445676654
No 374
>PF14117 DUF4287: Domain of unknown function (DUF4287)
Probab=27.57 E-value=67 Score=17.25 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=11.5
Q ss_pred cCHHHHHHHHHhcC
Q 038113 79 RTKHELMTLVTGAG 92 (112)
Q Consensus 79 rt~~e~~~ll~~aG 92 (112)
++.++|.+++++.|
T Consensus 15 k~~~~W~~~~~~~~ 28 (61)
T PF14117_consen 15 KTLDEWLALAREGG 28 (61)
T ss_pred cCHHHHHHHHHHhC
Confidence 68888888888884
No 375
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=27.56 E-value=29 Score=21.44 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=17.5
Q ss_pred ccccCChHHHHHHHHHHHhhCC
Q 038113 16 ILHDWSDEHCLKLFKKCYKSIP 37 (112)
Q Consensus 16 vlh~~~d~~~~~iL~~~~~aL~ 37 (112)
.+|.|+-.++.++-++++++|.
T Consensus 100 ymH~~~~gdp~~lA~~vr~Ald 121 (123)
T PF07485_consen 100 YMHIWGVGDPAKLARKVRAALD 121 (123)
T ss_pred EEEEEecCCHHHHHHHHHHHHh
Confidence 5688887778888888888875
No 376
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=27.44 E-value=53 Score=14.80 Aligned_cols=13 Identities=23% Similarity=0.353 Sum_probs=9.1
Q ss_pred ccCChHHHHHHHH
Q 038113 18 HDWSDEHCLKLFK 30 (112)
Q Consensus 18 h~~~d~~~~~iL~ 30 (112)
|++++++..+=|.
T Consensus 14 h~ls~ee~~~RL~ 26 (28)
T PF12368_consen 14 HGLSEEEVAERLA 26 (28)
T ss_pred cCCCHHHHHHHHH
Confidence 7788887665554
No 377
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=27.33 E-value=75 Score=21.98 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEee
Q 038113 24 HCLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 24 ~~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
+..+....+.++|+.||+|+++-.
T Consensus 34 ~I~~av~~~~~~l~~ggrl~~~Ga 57 (257)
T cd05007 34 QIARAVDAAAERLRAGGRLIYVGA 57 (257)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcC
Confidence 356677788889999999988764
No 378
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=27.19 E-value=79 Score=25.32 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhCCCCCEEEEE
Q 038113 25 CLKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~ 45 (112)
-..+++.+.+.|+|||.+++.
T Consensus 635 y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 635 HVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred HHHHHHHHHHHcCCCCEEEEE
Confidence 467899999999999988764
No 379
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=26.96 E-value=2.4e+02 Score=20.28 Aligned_cols=84 Identities=19% Similarity=0.179 Sum_probs=41.9
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhh-------hhchhhhhcCCCceecCHHHHHHH---
Q 038113 18 HDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIIS-------QGDVLMMTQNPGGKERTKHELMTL--- 87 (112)
Q Consensus 18 h~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~rt~~e~~~l--- 87 (112)
.-|+|+ ...-++++.+++...|..++++..-......+....... ............-++.|.+|++++
T Consensus 72 ~i~~d~-~i~~~k~l~~~vh~~Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~ii~~ 150 (341)
T PF00724_consen 72 GIWDDE-QIPGLKKLADAVHAHGAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEIIED 150 (341)
T ss_dssp BSSSHH-HHHHHHHHHHHHHHTTSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHHHHH
T ss_pred hhchhh-HHHHHHHHHHHHHhcCccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeCCHHHHHHHHHH
Confidence 335554 578889999999987777777765433221110000000 000000000001245677777654
Q ss_pred -------HHhcCCCeeEEEEeC
Q 038113 88 -------VTGAGFGGIRFESFI 102 (112)
Q Consensus 88 -------l~~aGf~~~~~~~~~ 102 (112)
.++|||..++++---
T Consensus 151 f~~AA~~A~~AGfDGVEIH~ah 172 (341)
T PF00724_consen 151 FAQAARRAKEAGFDGVEIHAAH 172 (341)
T ss_dssp HHHHHHHHHHTT-SEEEEEEST
T ss_pred HHHHHHHHHHhccCeEeecccc
Confidence 568999999988643
No 380
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=26.85 E-value=34 Score=23.12 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=38.4
Q ss_pred cccCChH---HHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhh---hhhhchhhhhcCCCceecCHHHHHHHHHh
Q 038113 17 LHDWSDE---HCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKI---ISQGDVLMMTQNPGGKERTKHELMTLVTG 90 (112)
Q Consensus 17 lh~~~d~---~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~rt~~e~~~ll~~ 90 (112)
.+.|.+. +...+++++.+. .=+.+++.+.-.+....++..+.. ....+... ...|..++.++++++. +
T Consensus 138 ~~gw~~~~~~~~~~~~~~~~~~--g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~~~v---iasGGv~~~~Dl~~l~-~ 211 (229)
T PF00977_consen 138 TNGWQESSGIDLEEFAKRLEEL--GAGEIILTDIDRDGTMQGPDLELLKQLAEAVNIPV---IASGGVRSLEDLRELK-K 211 (229)
T ss_dssp ETTTTEEEEEEHHHHHHHHHHT--T-SEEEEEETTTTTTSSS--HHHHHHHHHHHSSEE---EEESS--SHHHHHHHH-H
T ss_pred ecCccccCCcCHHHHHHHHHhc--CCcEEEEeeccccCCcCCCCHHHHHHHHHHcCCCE---EEecCCCCHHHHHHHH-H
Confidence 4456643 355666665553 226677777666555555433222 22222222 2367788999999988 6
Q ss_pred cCCCe
Q 038113 91 AGFGG 95 (112)
Q Consensus 91 aGf~~ 95 (112)
.|..-
T Consensus 212 ~G~~g 216 (229)
T PF00977_consen 212 AGIDG 216 (229)
T ss_dssp TTECE
T ss_pred CCCcE
Confidence 77643
No 381
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=26.56 E-value=1.8e+02 Score=19.60 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=19.2
Q ss_pred CCceecCHHHHHHHHHhcCCCeeEE
Q 038113 74 PGGKERTKHELMTLVTGAGFGGIRF 98 (112)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~~~~~ 98 (112)
.+|..++.++..++++..|...+-+
T Consensus 198 a~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 198 ASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred EeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 4778889999999998777655443
No 382
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=26.50 E-value=1.9e+02 Score=18.92 Aligned_cols=16 Identities=13% Similarity=0.299 Sum_probs=9.5
Q ss_pred CCCCCEEEEEeeecCC
Q 038113 36 IPKDGMVIIVETILPK 51 (112)
Q Consensus 36 L~pgg~l~i~e~~~~~ 51 (112)
+.+|.+++|+|-++..
T Consensus 102 l~~G~~VLIVDDIi~T 117 (187)
T TIGR01367 102 VKPGEKFVAVEDVVTT 117 (187)
T ss_pred CCCCCEEEEEEeeecc
Confidence 3456666666666654
No 383
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=26.49 E-value=1.3e+02 Score=16.81 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=23.0
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e 46 (112)
|++++..-+-+.+ ...+++++++.- |+..++++-
T Consensus 45 d~iiid~~~~~~~---~~~~~~~i~~~~-~~~~ii~~t 78 (112)
T PF00072_consen 45 DLIIIDLELPDGD---GLELLEQIRQIN-PSIPIIVVT 78 (112)
T ss_dssp SEEEEESSSSSSB---HHHHHHHHHHHT-TTSEEEEEE
T ss_pred eEEEEEeeecccc---cccccccccccc-ccccEEEec
Confidence 7888876665533 467777777665 777777655
No 384
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=26.46 E-value=1.2e+02 Score=20.27 Aligned_cols=32 Identities=16% Similarity=-0.037 Sum_probs=22.5
Q ss_pred CHHHHHHHHHhcCCCeeEEEEe--CC-ceEEEEEE
Q 038113 80 TKHELMTLVTGAGFGGIRFESF--IC-NLWVMEFY 111 (112)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~--~~-~~~vie~~ 111 (112)
....+++||.+.||...+-.-+ .+ ++-|+.+.
T Consensus 104 ~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~ 138 (205)
T PF04816_consen 104 HAYELRRWLYENGFEIIDEDLVEENGRFYEIIVAE 138 (205)
T ss_dssp -HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEE
T ss_pred ChHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEE
Confidence 5779999999999998865544 23 45565554
No 385
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=26.40 E-value=86 Score=23.80 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=32.8
Q ss_pred CCCCCc-----c-cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 038113 2 FQNVAK-----G-DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPK 51 (112)
Q Consensus 2 f~~~P~-----~-D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~ 51 (112)
|||+|. + |..+++.==-..+|---.-||+++..+|=..|.+++......+
T Consensus 180 ~Dpl~~vA~eIa~ea~lLCFDEfQVTDVADAmiL~rLf~~Lf~~GvVlvATSNR~P 235 (467)
T KOG2383|consen 180 IDPLPVVADEIAEEAILLCFDEFQVTDVADAMILKRLFEHLFKNGVVLVATSNRAP 235 (467)
T ss_pred CCccHHHHHHHhhhceeeeechhhhhhHHHHHHHHHHHHHHHhCCeEEEEeCCCCh
Confidence 477773 2 5555554211233433368999999999999999998765543
No 386
>PRK07451 translation initiation factor Sui1; Validated
Probab=26.38 E-value=1.6e+02 Score=17.98 Aligned_cols=49 Identities=16% Similarity=0.301 Sum_probs=32.6
Q ss_pred ChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCee
Q 038113 21 SDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGI 96 (112)
Q Consensus 21 ~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 96 (112)
.+.+..++++.+...+.-||.+ .++. . - . .|. -.+.+.++|.+.||++.
T Consensus 63 ~~~dlk~LaK~LK~k~gcGGtv------kd~~-----I-------e------l-QGD--~r~~v~~~L~~~Gf~~k 111 (115)
T PRK07451 63 KPETLAKLLKQLKTQCGSGGTV------KDNT-----I-------E------I-QGD--HRQKILEILIKLGYKAK 111 (115)
T ss_pred CHHHHHHHHHHHHHHhcCCceE------cCCE-----E-------E------E-cCc--HHHHHHHHHHHCCCeEe
Confidence 4566888888888888888877 1110 0 0 0 222 24578999999999764
No 387
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=26.15 E-value=1.4e+02 Score=17.33 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=16.2
Q ss_pred CHHHHHHHHHhcCCCeeEEE
Q 038113 80 TKHELMTLVTGAGFGGIRFE 99 (112)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~ 99 (112)
|..+..+.|+++|.+.+.+.
T Consensus 103 Tl~~~~~~L~~~g~~~v~~~ 122 (125)
T PF00156_consen 103 TLKEAIELLKEAGAKVVGVA 122 (125)
T ss_dssp HHHHHHHHHHHTTBSEEEEE
T ss_pred HHHHHHHHHHhCCCcEEEEE
Confidence 67888999999998876553
No 388
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=26.11 E-value=65 Score=18.73 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=11.2
Q ss_pred CceecCHHHHHHHHHhcCCCe
Q 038113 75 GGKERTKHELMTLVTGAGFGG 95 (112)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~ 95 (112)
|.-.+|.+++.+-|++.||..
T Consensus 38 Nns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 38 NNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp S-SSS-HHHHHHHHHHTTTT-
T ss_pred CCCCCCHHHHHHHHHhcCcCC
Confidence 444456666666666666663
No 389
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=25.99 E-value=2.3e+02 Score=19.54 Aligned_cols=68 Identities=10% Similarity=0.024 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHhhCCCCCEEEEEe--eecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCeeEEE
Q 038113 22 DEHCLKLFKKCYKSIPKDGMVIIVE--TILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFE 99 (112)
Q Consensus 22 d~~~~~iL~~~~~aL~pgg~l~i~e--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 99 (112)
.+|+.-+..|+..-|++||.++++= ..++.+. .+ .+ -..+-.+-|++.||+..+..
T Consensus 156 p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~-dp-~~--------------------vf~~ev~kL~~~~f~i~e~~ 213 (231)
T COG1889 156 PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTA-DP-EE--------------------VFKDEVEKLEEGGFEILEVV 213 (231)
T ss_pred chHHHHHHHHHHHhcccCCeEEEEEEeecccccC-CH-HH--------------------HHHHHHHHHHhcCceeeEEe
Confidence 4567888899999999999766542 2222221 11 00 01222455677899999988
Q ss_pred EeCC---ceEEEEEE
Q 038113 100 SFIC---NLWVMEFY 111 (112)
Q Consensus 100 ~~~~---~~~vie~~ 111 (112)
.+.+ .+.+|.++
T Consensus 214 ~LePye~DH~~i~~~ 228 (231)
T COG1889 214 DLEPYEKDHALIVAK 228 (231)
T ss_pred ccCCcccceEEEEEe
Confidence 8754 35555543
No 390
>PF08714 Fae: Formaldehyde-activating enzyme (Fae); InterPro: IPR014826 This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT []. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.; GO: 0016840 carbon-nitrogen lyase activity, 0016051 carbohydrate biosynthetic process; PDB: 1Y60_A 1Y5Y_D.
Probab=25.98 E-value=68 Score=20.79 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=17.3
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhh
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKS 35 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~a 35 (112)
|++++..++-||.-.+-.+|.+.=|+|
T Consensus 103 dl~Iiv~Vfi~p~a~D~~kiy~~NY~A 129 (159)
T PF08714_consen 103 DLVIIVSVFIHPDALDDKKIYRYNYEA 129 (159)
T ss_dssp GEEEEEEEE--TT---HHHHHHHHHHH
T ss_pred cEEEEEEEEeCccccCHHHHHHHHHHH
Confidence 888888888888877777787766665
No 391
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=25.91 E-value=1.5e+02 Score=21.74 Aligned_cols=23 Identities=13% Similarity=0.262 Sum_probs=18.2
Q ss_pred HHHHHHHhhCCCCCEEEEEeeec
Q 038113 27 KLFKKCYKSIPKDGMVIIVETIL 49 (112)
Q Consensus 27 ~iL~~~~~aL~pgg~l~i~e~~~ 49 (112)
.-+....++|++||+++++-...
T Consensus 240 ~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 240 ATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred hhHHHHHHHHhcCCEEEEECCCC
Confidence 35667778899999999987663
No 392
>PF08564 CDC37_C: Cdc37 C terminal domain; InterPro: IPR013873 Cdc37 is a protein required for the activity of numerous eukaryotic protein kinases. This entry corresponds to the C-terminal domain whose function is unclear. It is found C-terminal to the Hsp90 chaperone (heat shock protein 90) binding domain IPR013874 from INTERPRO and the N-terminal kinase binding domain of Cdc37 IPR013855 from INTERPRO []. ; PDB: 1US7_B.
Probab=25.87 E-value=17 Score=21.53 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=18.1
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhh
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKS 35 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~a 35 (112)
|+=-+..||-.++.+++..++++|-++
T Consensus 36 ~ld~vnkVl~~M~veeAE~~v~~~~es 62 (99)
T PF08564_consen 36 DLDEVNKVLGKMPVEEAEYHVERCIES 62 (99)
T ss_dssp ----HHHHHT--SSSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 666778889999988899999999873
No 393
>cd00132 CRIB PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules.
Probab=25.82 E-value=67 Score=15.60 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCCC
Q 038113 81 KHELMTLVTGAGFG 94 (112)
Q Consensus 81 ~~e~~~ll~~aGf~ 94 (112)
..+|..+++.+|.+
T Consensus 28 p~~w~~l~~~~~is 41 (42)
T cd00132 28 PPDLQSLFQTAGIS 41 (42)
T ss_pred CHHHHHHHHHccCC
Confidence 45999999998864
No 394
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=25.77 E-value=1.8e+02 Score=22.20 Aligned_cols=44 Identities=16% Similarity=0.207 Sum_probs=33.1
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKL 52 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~ 52 (112)
|++++=-.=.+--|++-..=++++.++++|.-.|+++|...+.+
T Consensus 184 DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd 227 (451)
T COG0541 184 DVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD 227 (451)
T ss_pred CEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchH
Confidence 66666544333346667777888999999999999999988754
No 395
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=25.57 E-value=1.7e+02 Score=19.39 Aligned_cols=24 Identities=13% Similarity=0.183 Sum_probs=17.5
Q ss_pred CCceecCHHHHHHHHHhcCCCeeE
Q 038113 74 PGGKERTKHELMTLVTGAGFGGIR 97 (112)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~~~~ 97 (112)
.+|..++.++.+++++..|..-+-
T Consensus 195 a~GGi~~~~di~~~~~~g~~~gv~ 218 (233)
T PRK00748 195 ASGGVSSLDDIKALKGLGAVEGVI 218 (233)
T ss_pred EeCCCCCHHHHHHHHHcCCccEEE
Confidence 477788999999988865555443
No 396
>COG3910 Predicted ATPase [General function prediction only]
Probab=25.49 E-value=1.3e+02 Score=20.52 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=21.2
Q ss_pred ChHHHHHHHHHHHhhCCCCCEEEEEee
Q 038113 21 SDEHCLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 21 ~d~~~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
+...-.++|..+++..++|++++|...
T Consensus 160 Sp~RQlella~l~~la~sGaQ~IiATH 186 (233)
T COG3910 160 SPSRQLELLAILRDLADSGAQIIIATH 186 (233)
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 444457889999999999999988764
No 397
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=25.46 E-value=85 Score=18.99 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=18.6
Q ss_pred CHHHHHHHHHhcCCCeeEEEEeCCc
Q 038113 80 TKHELMTLVTGAGFGGIRFESFICN 104 (112)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~~~~ 104 (112)
+...+.+-|.++||...++...+|+
T Consensus 12 Da~~l~~~L~~~g~~~TkLsstGGF 36 (109)
T PF06153_consen 12 DADDLSDALNENGFRVTKLSSTGGF 36 (109)
T ss_dssp HHHHHHHHHHHTT--EEEEEEEETT
T ss_pred hHHHHHHHHHHCCceEEEEecccce
Confidence 4567788899999999999988763
No 398
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=25.45 E-value=1.9e+02 Score=21.44 Aligned_cols=80 Identities=8% Similarity=-0.010 Sum_probs=41.8
Q ss_pred cCChHHHHHHHHHHHhhCCCCCEEEEE----eeecCCCCC-CchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCC
Q 038113 19 DWSDEHCLKLFKKCYKSIPKDGMVIIV----ETILPKLPE-TRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGF 93 (112)
Q Consensus 19 ~~~d~~~~~iL~~~~~aL~pgg~l~i~----e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf 93 (112)
..++++..++++++...--|.++-++. +..++.... ..+.......+...+... -+..-....+.+.++.|||
T Consensus 103 ~I~~~dv~~~~~~a~~~~~~~~~~i~~~~p~~~~vD~~~~v~~P~g~~g~~l~~~v~lv--~~~~~~~~~~~~a~~~aGl 180 (420)
T PRK09472 103 EVTQEDVENVVHTAKSVRVRDEHRILHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHLI--TCHNDMAKNIVKAVERCGL 180 (420)
T ss_pred eeCHHHHHHHHHHhhccCCCCCCEEEEEeceeEEECCCCCcCCCCCCcccEEEEEEEEE--EEchHHHHHHHHHHHHcCC
Confidence 478889999999987644444453332 334443321 111111111111111111 1222345677889999999
Q ss_pred CeeEEEE
Q 038113 94 GGIRFES 100 (112)
Q Consensus 94 ~~~~~~~ 100 (112)
++..+..
T Consensus 181 ~v~~iv~ 187 (420)
T PRK09472 181 KVDQLIF 187 (420)
T ss_pred eEeeEEe
Confidence 9987754
No 399
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=25.23 E-value=1.1e+02 Score=17.94 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=22.5
Q ss_pred CChHHHHHHHHHHHhhCCC-CCEEEEEee
Q 038113 20 WSDEHCLKLFKKCYKSIPK-DGMVIIVET 47 (112)
Q Consensus 20 ~~d~~~~~iL~~~~~aL~p-gg~l~i~e~ 47 (112)
.++++...+++++.+.+.. ||.+.-++.
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~gg~i~~~~~ 42 (108)
T PRK00453 14 LSEEQVKALVERFKGVITENGGTIHKVED 42 (108)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 4788899999999998886 677766664
No 400
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=25.11 E-value=1.9e+02 Score=18.49 Aligned_cols=66 Identities=15% Similarity=0.114 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCc--h--hhhhh-h---h---hchhhhhcCCCceecCHHHHHHHHHhc
Q 038113 25 CLKLFKKCYKSIPKDGMVIIVETILPKLPETR--T--LSKII-S---Q---GDVLMMTQNPGGKERTKHELMTLVTGA 91 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~--~--~~~~~-~---~---~~~~~~~~~~~g~~rt~~e~~~ll~~a 91 (112)
...+..+..+.|++-..+=+++.--...+... . ..... . . -+.... +..+|+..|.+++.+++++.
T Consensus 16 ~~~~i~~Y~kRl~~~~~~e~~el~~~~~~~~~~~~~~~~~E~~~il~~l~~~~~~i~-LDe~Gk~~sS~~fA~~l~~~ 92 (157)
T PRK00103 16 LKDGIAEYLKRFPRYLKLELIEIPDEKRPKNADAEQIKAKEGERILAALPKGARVIA-LDERGKQLSSEEFAQELERW 92 (157)
T ss_pred HHHHHHHHHHhcCccCCceEEEecCCcCccccCHHHHHHHHHHHHHhhCCCCCEEEE-EcCCCCcCCHHHHHHHHHHH
Confidence 56778888888888777766664222111110 0 00000 0 0 111222 24589999999999999865
No 401
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=24.92 E-value=68 Score=20.98 Aligned_cols=22 Identities=5% Similarity=0.176 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhCCCCCEEEEE
Q 038113 24 HCLKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 24 ~~~~iL~~~~~aL~pgg~l~i~ 45 (112)
.+.+++.++.+.|+.|.+++|+
T Consensus 118 ~~~~i~~eL~~~L~~g~~V~vH 139 (168)
T PF05706_consen 118 AAWQILEELAARLENGRKVLVH 139 (168)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEE
Confidence 3677899999999999888764
No 402
>PRK06824 translation initiation factor Sui1; Validated
Probab=24.88 E-value=1.8e+02 Score=17.90 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=34.2
Q ss_pred CChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCee
Q 038113 20 WSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGI 96 (112)
Q Consensus 20 ~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 96 (112)
..+.+..++++.+.+.+.-||.+- |..+. ..|. -.+.+.++|++.||++.
T Consensus 65 ~~~~dlk~l~K~LKkk~gcGGtvk--d~~Ie-----------------------iQGD--~r~~v~~~L~~~G~~~k 114 (118)
T PRK06824 65 LAEDALKELAKELKRRCGTGGTLK--DGVIE-----------------------IQGD--HVELLLAELLKRGFKAK 114 (118)
T ss_pred CCHHHHHHHHHHHHHHhcCCceEe--cCEEE-----------------------EcCc--HHHHHHHHHHHCCCeEe
Confidence 346668899999999999998873 10000 0222 24578999999999875
No 403
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=24.81 E-value=2e+02 Score=19.94 Aligned_cols=75 Identities=11% Similarity=-0.002 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCeeEEEEeC
Q 038113 25 CLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFESFI 102 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 102 (112)
..++|+++|.. |-+|.++-...+..+..-........+|......-.+-+..+..=++..++.+|-+..++.+++
T Consensus 118 ~~~~lq~lR~~---g~~l~iisN~d~r~~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~vhIg 192 (237)
T KOG3085|consen 118 MQELLQKLRKK---GTILGIISNFDDRLRLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEECVHIG 192 (237)
T ss_pred HHHHHHHHHhC---CeEEEEecCCcHHHHHHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHeEEec
Confidence 34788888874 5344444333222221100001124456555443323345577889999999999999988875
No 404
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=24.52 E-value=91 Score=23.01 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.2
Q ss_pred eecCHHHHHHHHHhcCCCeeEEEEe
Q 038113 77 KERTKHELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 77 ~~rt~~e~~~ll~~aGf~~~~~~~~ 101 (112)
..++.+|+.++++++||..++.-+.
T Consensus 335 ~~~~~eel~~~i~~aG~~p~~Rdt~ 359 (370)
T COG1060 335 DWRSVEELAALIKEAGRIPVERDTL 359 (370)
T ss_pred CCCCHHHHHHHHHHcCCCeeeeccc
Confidence 3678899999999999999876654
No 405
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=24.37 E-value=1.8e+02 Score=18.02 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=18.9
Q ss_pred ChHHHHHHHHHHHhhCCCCCEEEEEe
Q 038113 21 SDEHCLKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 21 ~d~~~~~iL~~~~~aL~pgg~l~i~e 46 (112)
+.++-.++-+++.+.|++|..+++.-
T Consensus 4 s~~~t~~l~~~l~~~l~~~~~i~l~G 29 (133)
T TIGR00150 4 DEKAMDKFGKAFAKPLDFGTVVLLKG 29 (133)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEEc
Confidence 34556788888888898887766543
No 406
>PF13137 DUF3983: Protein of unknown function (DUF3983)
Probab=24.36 E-value=38 Score=15.89 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=13.2
Q ss_pred eecCHHHHHHHHHhcCC
Q 038113 77 KERTKHELMTLVTGAGF 93 (112)
Q Consensus 77 ~~rt~~e~~~ll~~aGf 93 (112)
+.+....|+.+|-++|.
T Consensus 18 K~rv~kAWRNiFvqagI 34 (34)
T PF13137_consen 18 KYRVDKAWRNIFVQAGI 34 (34)
T ss_pred HHHHHHHHHHHHHHccC
Confidence 34567789999999883
No 407
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=24.31 E-value=1.1e+02 Score=20.22 Aligned_cols=24 Identities=8% Similarity=0.009 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEee
Q 038113 24 HCLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 24 ~~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
...++-+.+.++++.|++++++-.
T Consensus 26 ~I~~aa~~i~~~l~~G~Kvl~cGN 49 (176)
T COG0279 26 AIERAAQLLVQSLLNGNKVLACGN 49 (176)
T ss_pred HHHHHHHHHHHHHHcCCEEEEECC
Confidence 356677778889999999999864
No 408
>cd01414 SAICAR_synt_Sc non-metazoan 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. Eukaryotic, bacterial, and archaeal group of SAICAR synthetases represented by the Saccharomyces cerevisiae (Sc) enzyme, mostly absent in metazoans. SAICAR synthetase catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=24.24 E-value=1.8e+02 Score=20.66 Aligned_cols=49 Identities=10% Similarity=0.153 Sum_probs=29.2
Q ss_pred CCEEEEEeee-cCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCee
Q 038113 39 DGMVIIVETI-LPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGI 96 (112)
Q Consensus 39 gg~l~i~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 96 (112)
+|.|+++|-+ .|++. ++++.........-...+.+-++.||.+.|+...
T Consensus 202 ~g~ivL~DEi~TPDs~---------R~W~~~~~~~g~~~~~lDK~~~R~~l~~~~~~~~ 251 (279)
T cd01414 202 NGEIILIDEVLTPDSS---------RFWPADSYEPGKEQPSFDKQFVRDWLEASGWDKQ 251 (279)
T ss_pred CCcEEEEEecCCCCcc---------eeeeccccccCCCccccChHHHHHHHHhcCCCcc
Confidence 5788888877 44432 2233221100001135788999999999998853
No 409
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=24.11 E-value=1.4e+02 Score=22.75 Aligned_cols=37 Identities=16% Similarity=0.057 Sum_probs=24.1
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVE 46 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e 46 (112)
|..+..+++...++.+ ...+.++...|++||+..++=
T Consensus 319 d~~~~~~~l~~~~~~~-~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 319 VRFKDAGTLAPNSKAD-LAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred cchhcccCCCCCchhh-HHHHHHHHHhcCCCCeEEEEe
Confidence 4444444444455554 677778888999999866553
No 410
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=24.10 E-value=70 Score=25.37 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=25.9
Q ss_pred CceecCHHHHHHHHHhcCCCeeEEEEeCCce
Q 038113 75 GGKERTKHELMTLVTGAGFGGIRFESFICNL 105 (112)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~ 105 (112)
-|...+.+++.+.|.+.||+.+..+..+|-+
T Consensus 163 ~G~~i~~~~l~~~L~~~GY~r~~~v~~~GeF 193 (652)
T PRK05298 163 VGQEIDRRELLRRLVDLQYERNDIDFQRGTF 193 (652)
T ss_pred CCCCcCHHHHHHHHHHcCCcccCccCCCceE
Confidence 6778899999999999999999877665533
No 411
>PF01250 Ribosomal_S6: Ribosomal protein S6; InterPro: IPR000529 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S6 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S6 is known to bind together with S18 to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups bacterial, red algal chloroplast and cyanelle S6 ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 3BBN_F 3R3T_B 3F1E_F 2QNH_g 2OW8_g 3PYQ_F 3PYS_F 3PYU_F 3MR8_F 3PYN_F ....
Probab=24.04 E-value=90 Score=17.65 Aligned_cols=29 Identities=41% Similarity=0.517 Sum_probs=21.9
Q ss_pred cCChHHHHHHHHHHHhhCCCC-CEEEEEee
Q 038113 19 DWSDEHCLKLFKKCYKSIPKD-GMVIIVET 47 (112)
Q Consensus 19 ~~~d~~~~~iL~~~~~aL~pg-g~l~i~e~ 47 (112)
+.++++..++++++.+.+... |.+.-++.
T Consensus 12 ~~~~~~~~~~~~~~~~~i~~~gg~v~~~~~ 41 (92)
T PF01250_consen 12 DLSEEEIKKLIERVKKIIEKNGGVVRSVEN 41 (92)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Confidence 467888999999999988874 55555554
No 412
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=24.01 E-value=88 Score=16.20 Aligned_cols=16 Identities=6% Similarity=0.244 Sum_probs=11.1
Q ss_pred cCHHHHHHHHHhcCCC
Q 038113 79 RTKHELMTLVTGAGFG 94 (112)
Q Consensus 79 rt~~e~~~ll~~aGf~ 94 (112)
.|.++..+||+..||.
T Consensus 4 w~~~~v~~WL~~~gl~ 19 (66)
T PF07647_consen 4 WSPEDVAEWLKSLGLE 19 (66)
T ss_dssp HCHHHHHHHHHHTTCG
T ss_pred CCHHHHHHHHHHCCcH
Confidence 3567777777777774
No 413
>PRK05473 hypothetical protein; Provisional
Probab=24.00 E-value=64 Score=18.66 Aligned_cols=22 Identities=9% Similarity=0.330 Sum_probs=17.1
Q ss_pred CChHHHHHHHHHHHhhCCCCCE
Q 038113 20 WSDEHCLKLFKKCYKSIPKDGM 41 (112)
Q Consensus 20 ~~d~~~~~iL~~~~~aL~pgg~ 41 (112)
-...++..+|..+++||..-|.
T Consensus 15 ~~~~~v~eiL~~Vy~AL~EKGY 36 (86)
T PRK05473 15 EKKKDVREILTTVYDALEEKGY 36 (86)
T ss_pred ccHHHHHHHHHHHHHHHHHcCC
Confidence 3445689999999999986554
No 414
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=23.96 E-value=95 Score=22.80 Aligned_cols=23 Identities=4% Similarity=0.187 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhCCCCCEEEEEee
Q 038113 25 CLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
-.+.|+.+.+.|++||++++.-+
T Consensus 289 y~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 289 YEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred HHHHHHHHHHHhhcCcEEEEecC
Confidence 57889999999999999988654
No 415
>PRK13683 hypothetical protein; Provisional
Probab=23.91 E-value=71 Score=18.48 Aligned_cols=24 Identities=8% Similarity=0.177 Sum_probs=18.4
Q ss_pred CChHHHHHHHHHHHhhCCCC-CEEE
Q 038113 20 WSDEHCLKLFKKCYKSIPKD-GMVI 43 (112)
Q Consensus 20 ~~d~~~~~iL~~~~~aL~pg-g~l~ 43 (112)
=..+++..+-+.++++|+.| .+++
T Consensus 20 Ke~edA~alYq~I~~am~sg~P~ll 44 (87)
T PRK13683 20 KEAEDAEALYQQIRQAMRSGNPRLL 44 (87)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCcEE
Confidence 34567899999999999986 4443
No 416
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=23.89 E-value=1.2e+02 Score=16.45 Aligned_cols=20 Identities=10% Similarity=0.130 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCCeeEEEEe
Q 038113 82 HELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~~~ 101 (112)
++..+-|++.||.+..++.+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~ 21 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNM 21 (68)
T ss_pred HHHHHHHHHcCCceEEEEcc
Confidence 46788899999999988765
No 417
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=23.82 E-value=3.4e+02 Score=21.32 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhc
Q 038113 23 EHCLKLFKKCYKSIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGA 91 (112)
Q Consensus 23 ~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~a 91 (112)
+++.++|+.+++.=..-|.-.++|...+..... . ...+..-+...+-|+.++..+|++++.+.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~l 476 (607)
T PRK11057 414 EDAQKALSCIYRVNQRFGMGYVVEVLRGANNQR--I----RDYGHDKLKVYGIGRDKSHEHWVSVIRQL 476 (607)
T ss_pred HHHHHHHHHHHHhcCCCCcceeeeeeeccCcch--h----hhcccccCCccCcCCcCCHHHHHHHHHHH
Confidence 346788887777533447778888877754321 1 11112112223458889999999888743
No 418
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.74 E-value=92 Score=16.21 Aligned_cols=17 Identities=12% Similarity=0.288 Sum_probs=13.9
Q ss_pred CHHHHHHHHHhcCCCee
Q 038113 80 TKHELMTLVTGAGFGGI 96 (112)
Q Consensus 80 t~~e~~~ll~~aGf~~~ 96 (112)
..++..+.|+++||++.
T Consensus 53 ~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 53 NPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CHHHHHHHHHHCCCeee
Confidence 45689999999999764
No 419
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=23.73 E-value=1.9e+02 Score=19.62 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=10.9
Q ss_pred ecCHHHHHHHHHhcCCCeeE
Q 038113 78 ERTKHELMTLVTGAGFGGIR 97 (112)
Q Consensus 78 ~rt~~e~~~ll~~aGf~~~~ 97 (112)
.++.+.+.++|++.||++..
T Consensus 31 ~~D~~~l~~~f~~lgF~V~~ 50 (243)
T cd00032 31 DVDAENLTKLFESLGYEVEV 50 (243)
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 34555556666666665543
No 420
>COG4808 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.61 E-value=75 Score=20.16 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=17.9
Q ss_pred ceecCHHHHHHHHHhcCCCee
Q 038113 76 GKERTKHELMTLVTGAGFGGI 96 (112)
Q Consensus 76 g~~rt~~e~~~ll~~aGf~~~ 96 (112)
.+..+-.+.+.+|+++||+.+
T Consensus 131 ~k~iSm~~sek~Lk~~Gfke~ 151 (152)
T COG4808 131 SKGISMKQSEKLLKAAGFKEV 151 (152)
T ss_pred cccccHHHHHHHHHhcCcccC
Confidence 466788999999999999865
No 421
>PTZ00311 phosphoenolpyruvate carboxykinase; Provisional
Probab=23.56 E-value=2.9e+02 Score=21.84 Aligned_cols=46 Identities=15% Similarity=0.089 Sum_probs=36.7
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCC
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPKLPE 54 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~~ 54 (112)
|-|+-..+=.-+++++-..+++++.+-|..+-++++.|.....++.
T Consensus 97 d~i~Wg~vN~p~~~~~f~~L~~~~~~yl~~~~~lyv~D~~vGaDp~ 142 (561)
T PTZ00311 97 DDIWWGKVNIPLSEESFEINKKRAIDYLNTRERLFVVDGYAGWDPK 142 (561)
T ss_pred cccccCccCccCCHHHHHHHHHHHHHHHhcCCCEEEEeeeeecCcc
Confidence 5555566656677888888999999999888889999998877654
No 422
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=23.55 E-value=69 Score=18.32 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=12.2
Q ss_pred CHHHHHHHHHhcCC
Q 038113 80 TKHELMTLVTGAGF 93 (112)
Q Consensus 80 t~~e~~~ll~~aGf 93 (112)
-..+.++||.+.||
T Consensus 74 ~~~~Vk~wL~~~GF 87 (87)
T PF05046_consen 74 HVEEVKKWLLEKGF 87 (87)
T ss_pred cHHHHHHHHHHCcC
Confidence 36799999999998
No 423
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=23.55 E-value=1.2e+02 Score=15.62 Aligned_cols=23 Identities=13% Similarity=0.113 Sum_probs=18.3
Q ss_pred cccccCChHHHHHHHHHHHhhCC
Q 038113 15 WILHDWSDEHCLKLFKKCYKSIP 37 (112)
Q Consensus 15 ~vlh~~~d~~~~~iL~~~~~aL~ 37 (112)
.++...++++..++.+.+.+++.
T Consensus 7 ~~~~Grs~EqK~~L~~~it~a~~ 29 (60)
T PRK02289 7 DLFEGRSQEQKNALAREVTEVVS 29 (60)
T ss_pred EECCCCCHHHHHHHHHHHHHHHH
Confidence 34456789999999999988776
No 424
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=23.44 E-value=1.3e+02 Score=22.49 Aligned_cols=24 Identities=8% Similarity=0.155 Sum_probs=16.8
Q ss_pred HHHHHHHhhCCCCCEEEEEeeecC
Q 038113 27 KLFKKCYKSIPKDGMVIIVETILP 50 (112)
Q Consensus 27 ~iL~~~~~aL~pgg~l~i~e~~~~ 50 (112)
.+|+.=++-|.|||++++.=.-.+
T Consensus 218 ~FL~~Ra~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 218 GFLRARAQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHHHHHHHhccCcEEEEEEecCC
Confidence 344444567999999998865443
No 425
>cd02554 PseudoU_synth_RluF PseudoU_synth_RluF_like: Pseudouridine synthase, Escherichia coli RluF like. This group is comprised of bacterial proteins similar to Escherichia coli RluF. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RluF makes psi2604 in 23S RNA. psi2604 has only been detected in E. coli. It is absent from other eubacteria despite a precursor U at that site and from eukarya and archea which lack a precursor U at that site.
Probab=23.42 E-value=1.2e+02 Score=19.50 Aligned_cols=21 Identities=5% Similarity=0.249 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCCeeEEEEe
Q 038113 81 KHELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~ 101 (112)
..+++.++++.|+.+.+..++
T Consensus 119 ~~qIRrm~~~~G~~V~~L~Ri 139 (164)
T cd02554 119 NRQIRRMCEALGYRVTDLKRV 139 (164)
T ss_pred CHHHHHHHHHcCCEEEEEEEE
Confidence 348999999999999998876
No 426
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=23.28 E-value=96 Score=22.18 Aligned_cols=32 Identities=13% Similarity=0.240 Sum_probs=24.4
Q ss_pred cccccCChHHHHHHHHHHHhhCCCCC-EEEEEe
Q 038113 15 WILHDWSDEHCLKLFKKCYKSIPKDG-MVIIVE 46 (112)
Q Consensus 15 ~vlh~~~d~~~~~iL~~~~~aL~pgg-~l~i~e 46 (112)
+-=|.|+++++.++++.+.+..+.+| .++|.-
T Consensus 157 s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vtt 189 (311)
T PF06258_consen 157 SKHYRWDEEDAERLLDQLAALAAAYGGSLLVTT 189 (311)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEc
Confidence 34577999988899999988888755 676654
No 427
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=23.28 E-value=3e+02 Score=20.00 Aligned_cols=62 Identities=16% Similarity=0.238 Sum_probs=35.1
Q ss_pred HHHHHHHh--hCCCCCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCceecCHHHHHHHHHhcCCCeeEEEEeC
Q 038113 27 KLFKKCYK--SIPKDGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGKERTKHELMTLVTGAGFGGIRFESFI 102 (112)
Q Consensus 27 ~iL~~~~~--aL~pgg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 102 (112)
++|.+=.+ ...+.|+-+++|...+....+--..|. .+.. --+.+.++|+.+|+++++...++
T Consensus 4 ~il~~~~~y~~~~~~~~kv~VE~sSpNp~kplHvGHl---R~~i-----------iGd~laril~~~G~~V~r~nyig 67 (354)
T PF00750_consen 4 EILEKGEEYGSEKGKGKKVVVEFSSPNPTKPLHVGHL---RNTI-----------IGDSLARILEAAGYDVTRENYIG 67 (354)
T ss_dssp HHHHHGGGTT--TTTSEEEEEEE---BTTSS-BHHHH---HHHH-----------HHHHHHHHHHHTTEEEEEEEEEB
T ss_pred HHHhcchhcccccCCCCEEEEEecCCCCCCCCcCCcc---hhhh-----------hhHHHHHHHHHcCCeeeeEEEEC
Confidence 45554443 355678899999988865332111111 1110 13578999999999999988774
No 428
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=23.24 E-value=2.1e+02 Score=18.14 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=23.4
Q ss_pred cEEEecccccc----CC-hHHHHHHHHHHHhhCCCCCEEEEE
Q 038113 9 DAIYMKWILHD----WS-DEHCLKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 9 D~v~~~~vlh~----~~-d~~~~~iL~~~~~aL~pgg~l~i~ 45 (112)
|+.++.++-.+ ++ -++..+...++.+.++++|.+++.
T Consensus 73 ~i~viTni~~dH~~~~~s~~~~~~~k~~~~~~~~~~~~~v~n 114 (188)
T PF08245_consen 73 DIAVITNIGPDHLDRFGSIEEYAEAKAKIFRGLKPGGVAVLN 114 (188)
T ss_dssp SEEEE----SSSHCCTSSHHHHHHHHHGGHTTTSTTSEEEEE
T ss_pred heeeeceecccccccCCCHHHHHHHHHhhhhhcccceEEEec
Confidence 77888887654 33 255666677788888899988775
No 429
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=23.16 E-value=73 Score=13.85 Aligned_cols=16 Identities=19% Similarity=0.135 Sum_probs=12.4
Q ss_pred eecCHHHHHHHHH-hcC
Q 038113 77 KERTKHELMTLVT-GAG 92 (112)
Q Consensus 77 ~~rt~~e~~~ll~-~aG 92 (112)
..-+.+|+..+|+ +.|
T Consensus 15 G~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 15 GFIDFEELRAILRKSLG 31 (31)
T ss_dssp SEEEHHHHHHHHHHHTT
T ss_pred CcCcHHHHHHHHHHhcC
Confidence 3468999999998 565
No 430
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=23.09 E-value=2.3e+02 Score=20.59 Aligned_cols=29 Identities=10% Similarity=0.212 Sum_probs=21.0
Q ss_pred ccEEEeccccccCChHH-HHHHHHHHHhhCCCCCE
Q 038113 8 GDAIYMKWILHDWSDEH-CLKLFKKCYKSIPKDGM 41 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~-~~~iL~~~~~aL~pgg~ 41 (112)
+|+|+++ .++.. ...++..+...+++|..
T Consensus 82 ADvVIla-----VP~~~~v~~Vl~~L~~~L~~g~I 111 (342)
T PRK12557 82 GEIHILF-----TPFGKKTVEIAKNILPHLPENAV 111 (342)
T ss_pred CCEEEEE-----CCCcHHHHHHHHHHHhhCCCCCE
Confidence 4888777 34444 67888999999987753
No 431
>PRK09902 hypothetical protein; Provisional
Probab=23.02 E-value=34 Score=23.25 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=24.2
Q ss_pred cccCChHHHHHHHHHHHhhCCC-------CCEEEEEeeecCC
Q 038113 17 LHDWSDEHCLKLFKKCYKSIPK-------DGMVIIVETILPK 51 (112)
Q Consensus 17 lh~~~d~~~~~iL~~~~~aL~p-------gg~l~i~e~~~~~ 51 (112)
+..++......+++.|.++++. .|.+.+.+..++.
T Consensus 122 ~~~~~~~~k~~il~~va~~ia~LH~~Gv~Hgdly~khIll~~ 163 (216)
T PRK09902 122 VSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKT 163 (216)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHCCCcCCCCCHhheeecC
Confidence 3444555567888888887773 4788888877753
No 432
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=22.86 E-value=85 Score=19.34 Aligned_cols=19 Identities=5% Similarity=0.142 Sum_probs=15.1
Q ss_pred CHHHHHHHHHhcCCCeeEE
Q 038113 80 TKHELMTLVTGAGFGGIRF 98 (112)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~ 98 (112)
+.+.+.+||++.|++...+
T Consensus 63 ~v~~V~~wL~~~G~~~~~~ 81 (143)
T PF09286_consen 63 DVAAVKSWLKSHGLTVVEV 81 (143)
T ss_dssp HHHHHHHHHHHCT-EEEEE
T ss_pred HHHHHHHHHHHcCCceeEE
Confidence 5678999999999988773
No 433
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=22.80 E-value=2.2e+02 Score=18.22 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=13.1
Q ss_pred CHHHHHHHHHhcCCCeeEEE
Q 038113 80 TKHELMTLVTGAGFGGIRFE 99 (112)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~ 99 (112)
|..+..++++++|-+.+.+.
T Consensus 129 Tl~~~~~~l~~~Ga~~v~v~ 148 (175)
T PRK02304 129 TLEAAIKLLERLGAEVVGAA 148 (175)
T ss_pred HHHHHHHHHHHcCCEEEEEE
Confidence 56667777777776655443
No 434
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=22.80 E-value=3.7e+02 Score=20.90 Aligned_cols=29 Identities=21% Similarity=0.082 Sum_probs=26.9
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCC
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIP 37 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~ 37 (112)
+++++...+-..+.+--...++.|.+||.
T Consensus 136 EliimGGTFta~~~~yqe~Fi~~~~~amn 164 (515)
T COG1243 136 ELIIMGGTFTALSLEYQEWFLKVALKAMN 164 (515)
T ss_pred EEEEecccccCCCHHHHHHHHHHHHHhhh
Confidence 89999999999998888999999999999
No 435
>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]
Probab=22.69 E-value=3.1e+02 Score=21.58 Aligned_cols=37 Identities=11% Similarity=0.329 Sum_probs=27.4
Q ss_pred ccEEEecc--ccccCChHHHHHHHHHHHhhCCCCCE-EEEEe
Q 038113 8 GDAIYMKW--ILHDWSDEHCLKLFKKCYKSIPKDGM-VIIVE 46 (112)
Q Consensus 8 ~D~v~~~~--vlh~~~d~~~~~iL~~~~~aL~pgg~-l~i~e 46 (112)
||.++-.| -+-+++.++++++|+++... ||-. |.+.-
T Consensus 299 GDMiLQVNevsFENmSNd~AVrvLREaV~~--~gPi~ltvAk 338 (626)
T KOG3571|consen 299 GDMILQVNEVSFENMSNDQAVRVLREAVSR--PGPIKLTVAK 338 (626)
T ss_pred cceEEEeeecchhhcCchHHHHHHHHHhcc--CCCeEEEEee
Confidence 58888777 57789999999999999874 5633 43433
No 436
>PF12101 DUF3577: Protein of unknown function (DUF3577); InterPro: IPR021960 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.
Probab=22.63 E-value=1.4e+02 Score=18.94 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=22.5
Q ss_pred CChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 038113 20 WSDEHCLKLFKKCYKSIPKDGMVIIVETI 48 (112)
Q Consensus 20 ~~d~~~~~iL~~~~~aL~pgg~l~i~e~~ 48 (112)
..-+++.+++++|.++...+-+++|.=.+
T Consensus 58 V~G~eA~~Lv~r~~~av~~~~KVli~Frl 86 (137)
T PF12101_consen 58 VVGEEAKELVRRCQKAVDEDKKVLIGFRL 86 (137)
T ss_pred EecHHHHHHHHHHHhhcccCCcEEEEEEe
Confidence 34578999999999999888777664433
No 437
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=22.45 E-value=3.6e+02 Score=20.64 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=26.3
Q ss_pred EEeccccccCChHHHHHHHHHHHhhCC----CCCEEEEEeeecC
Q 038113 11 IYMKWILHDWSDEHCLKLFKKCYKSIP----KDGMVIIVETILP 50 (112)
Q Consensus 11 v~~~~vlh~~~d~~~~~iL~~~~~aL~----pgg~l~i~e~~~~ 50 (112)
..=..++++.+++.|..-.+.+++.|+ |.-.++|+.+...
T Consensus 80 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~kr~lvIvNP~SG 123 (481)
T PLN02958 80 ARKDFVFEPLSDESRRLWCQKLRDYLDSLGRPKRLLVFVNPFGG 123 (481)
T ss_pred eeeeEEEeCCCHHHHHHHHHHHHHHHhhccCCcEEEEEEcCCCC
Confidence 333456777888889999999888885 3333555555444
No 438
>PRK07680 late competence protein ComER; Validated
Probab=22.43 E-value=2.7e+02 Score=19.13 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=22.0
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEE
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVI 43 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~ 43 (112)
+|++++.- ++.....+++.+...++++..++
T Consensus 63 aDiVilav-----~p~~~~~vl~~l~~~l~~~~~ii 93 (273)
T PRK07680 63 SDLIFICV-----KPLDIYPLLQKLAPHLTDEHCLV 93 (273)
T ss_pred CCEEEEec-----CHHHHHHHHHHHHhhcCCCCEEE
Confidence 47776553 56667889999988888776433
No 439
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=22.39 E-value=1.3e+02 Score=17.53 Aligned_cols=22 Identities=5% Similarity=0.064 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhCCCCCEEEE
Q 038113 23 EHCLKLFKKCYKSIPKDGMVII 44 (112)
Q Consensus 23 ~~~~~iL~~~~~aL~pgg~l~i 44 (112)
.+...+++.+.++|+.|..++|
T Consensus 73 ~~~~~~~~~~~~~l~~g~~v~i 94 (130)
T TIGR00530 73 RAIATALKAAIEVLKQGRSIGV 94 (130)
T ss_pred HHHHHHHHHHHHHHhCCCEEEE
Confidence 3467889999999999887665
No 440
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=22.35 E-value=2.3e+02 Score=18.66 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=23.6
Q ss_pred CCC-cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEE
Q 038113 4 NVA-KGDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVII 44 (112)
Q Consensus 4 ~~P-~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i 44 (112)
.-| ++|+.++...+-.- ....|++++++++. -+++|
T Consensus 66 aSPRhADvLlVtG~vT~k----m~~~l~~~yeqmPe-PK~VI 102 (173)
T PRK14818 66 ASPRQADFMIVAGTLTYK----MAERARLLYDQMPE-PKYVI 102 (173)
T ss_pred CCcccccEEEEeCcCccc----cHHHHHHHHHhCCC-CCEEE
Confidence 446 47999999876432 24678888888753 34444
No 441
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=22.35 E-value=98 Score=21.56 Aligned_cols=21 Identities=14% Similarity=0.362 Sum_probs=17.7
Q ss_pred HHHHHHHhhCCCCCEEEEEee
Q 038113 27 KLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 27 ~iL~~~~~aL~pgg~l~i~e~ 47 (112)
..++.+.+.|++||+++++-.
T Consensus 212 ~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 212 SLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred HHHHHHHHhhhcCcEEEEEee
Confidence 467888899999999998764
No 442
>COG0347 GlnK Nitrogen regulatory protein PII [Amino acid transport and metabolism]
Probab=22.27 E-value=1.5e+02 Score=18.07 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=18.8
Q ss_pred CHHHHHHHHHhcCCCeeEEEEe
Q 038113 80 TKHELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 80 t~~e~~~ll~~aGf~~~~~~~~ 101 (112)
..++.++.|+++||.-..+..+
T Consensus 12 kl~~vkeaL~~~G~~gmTv~~V 33 (112)
T COG0347 12 KLDDVKEALEKAGVPGMTVTEV 33 (112)
T ss_pred HhHHHHHHHHHcCCCceEEEee
Confidence 4678999999999998888766
No 443
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=22.27 E-value=1.2e+02 Score=19.96 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhCCCCCEEEEE
Q 038113 24 HCLKLFKKCYKSIPKDGMVIIV 45 (112)
Q Consensus 24 ~~~~iL~~~~~aL~pgg~l~i~ 45 (112)
...+.++++.+.|+.|+.++|.
T Consensus 83 ~~~~~~~~~~~~L~~G~~l~IF 104 (210)
T cd07986 83 KNRESLREALRHLKNGGALIIF 104 (210)
T ss_pred hhHHHHHHHHHHHhCCCEEEEE
Confidence 4578899999999999888765
No 444
>PRK10475 23S rRNA pseudouridine synthase F; Provisional
Probab=22.26 E-value=1.2e+02 Score=21.43 Aligned_cols=21 Identities=10% Similarity=0.254 Sum_probs=18.5
Q ss_pred HHHHHHHHHhcCCCeeEEEEe
Q 038113 81 KHELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 81 ~~e~~~ll~~aGf~~~~~~~~ 101 (112)
..|+++++++.|+++.+..++
T Consensus 186 ~rqIRrm~~~~G~~V~~L~R~ 206 (290)
T PRK10475 186 NRQIRRMCEHFGYEVTKLERT 206 (290)
T ss_pred CHHHHHHHHHcCCEEeEEEEE
Confidence 348999999999999998876
No 445
>PHA00457 inhibitor of host bacterial RNA polymerase
Probab=22.16 E-value=1.1e+02 Score=16.36 Aligned_cols=14 Identities=29% Similarity=0.209 Sum_probs=10.5
Q ss_pred HHhcCCCeeEEEEe
Q 038113 88 VTGAGFGGIRFESF 101 (112)
Q Consensus 88 l~~aGf~~~~~~~~ 101 (112)
-+++||.+.++.|-
T Consensus 47 Y~~aGf~VtRiRP~ 60 (63)
T PHA00457 47 YVPAGFVVTRIRPE 60 (63)
T ss_pred hhccCcEEEEeccc
Confidence 34799999887753
No 446
>PRK03341 arginine repressor; Provisional
Probab=22.04 E-value=66 Score=20.96 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=16.1
Q ss_pred CceecCHHHHHHHHHhcCCCee
Q 038113 75 GGKERTKHELMTLVTGAGFGGI 96 (112)
Q Consensus 75 ~g~~rt~~e~~~ll~~aGf~~~ 96 (112)
.....|.+|+.+.|++.||.+.
T Consensus 26 ~~~i~tQ~eL~~~L~~~Gi~vT 47 (168)
T PRK03341 26 RQSVRSQAELAALLADEGIEVT 47 (168)
T ss_pred HCCCccHHHHHHHHHHcCCccc
Confidence 3345678888888888888754
No 447
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=21.98 E-value=1e+02 Score=21.77 Aligned_cols=23 Identities=9% Similarity=0.069 Sum_probs=18.7
Q ss_pred HHHHHHHhhCCCCCEEEEEeeec
Q 038113 27 KLFKKCYKSIPKDGMVIIVETIL 49 (112)
Q Consensus 27 ~iL~~~~~aL~pgg~l~i~e~~~ 49 (112)
..+..+.++|++||+++++-...
T Consensus 241 ~~~~~~~~~l~~~G~iv~~G~~~ 263 (347)
T PRK10309 241 QTVELAIEIAGPRAQLALVGTLH 263 (347)
T ss_pred HHHHHHHHHhhcCCEEEEEccCC
Confidence 47788889999999999886543
No 448
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=21.98 E-value=1e+02 Score=16.27 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=12.5
Q ss_pred cCHHHHHHHHHhcCCCee
Q 038113 79 RTKHELMTLVTGAGFGGI 96 (112)
Q Consensus 79 rt~~e~~~ll~~aGf~~~ 96 (112)
.+.+++.++.+++||...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft 42 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFT 42 (64)
T ss_pred CCHHHHHHHHHHcCCCCC
Confidence 356777777777777653
No 449
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=21.93 E-value=1.5e+02 Score=17.88 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=17.0
Q ss_pred HHHHHHHHhcCCCeeEEEEeCCc
Q 038113 82 HELMTLVTGAGFGGIRFESFICN 104 (112)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~~~~~~ 104 (112)
.--..+++++||+.+.....++.
T Consensus 125 ~~~~~~~~k~GF~~~g~~~~~~~ 147 (152)
T PF13523_consen 125 TRAIRLYEKAGFRKVGEFEFPDK 147 (152)
T ss_dssp HHHHHHHHHTT-EEEEEEEESSE
T ss_pred HHHHHHHHHcCCEEeeEEECCCC
Confidence 35678888999999988877653
No 450
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=21.84 E-value=2.5e+02 Score=18.53 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=28.4
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPK 51 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~ 51 (112)
|+++..++.+-+=.| .+.--..|.+||.+++|+|-.+-.
T Consensus 96 G~~i~~~Y~lEYg~d-----~~Emq~~Ai~~g~rvvvVDDllAT 134 (183)
T KOG1712|consen 96 GEVISESYELEYGED-----RFEMQKGAIKPGQRVVVVDDLLAT 134 (183)
T ss_pred CceeEEEEeeecCcc-----ceeeeccccCCCCeEEEEechhhc
Confidence 578888888765544 344446789999999999876643
No 451
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=21.76 E-value=1.2e+02 Score=21.41 Aligned_cols=23 Identities=9% Similarity=0.213 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhCCCCCEEEEEee
Q 038113 25 CLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
..+....+.++++.||+|+++-.
T Consensus 43 I~~av~~~~~~l~~gGrl~~~G~ 65 (291)
T TIGR00274 43 IAAAVEQIVQAFQQGGRLIYIGA 65 (291)
T ss_pred HHHHHHHHHHHHhcCCEEEEECC
Confidence 45566667788889999988753
No 452
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=21.72 E-value=1.1e+02 Score=21.68 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhCCCCCEEEEEee
Q 038113 25 CLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 25 ~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
..+....+.++|+.||+|+++-.
T Consensus 44 I~~a~~~~~~~l~~ggrl~~~Ga 66 (296)
T PRK12570 44 IAQAVDKIVAAFKKGGRLIYMGA 66 (296)
T ss_pred HHHHHHHHHHHHHcCCeEEEECC
Confidence 45556667788999999988753
No 453
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=21.70 E-value=69 Score=14.59 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=8.9
Q ss_pred HHHHHHHHhc---CCCee
Q 038113 82 HELMTLVTGA---GFGGI 96 (112)
Q Consensus 82 ~e~~~ll~~a---Gf~~~ 96 (112)
.||.+|+.+| |++..
T Consensus 3 ~EW~~Li~eA~~~Gls~e 20 (30)
T PF08671_consen 3 EEWVELIKEAKESGLSKE 20 (30)
T ss_dssp HHHHHHHHHHHHTT--HH
T ss_pred HHHHHHHHHHHHcCCCHH
Confidence 5788888755 66543
No 454
>KOG3431 consensus Apoptosis-related protein/predicted DNA-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=21.64 E-value=1.8e+02 Score=18.08 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=24.9
Q ss_pred eccccccCChHHHHHHHHHHHhhC-CCCCEEEE
Q 038113 13 MKWILHDWSDEHCLKLFKKCYKSI-PKDGMVII 44 (112)
Q Consensus 13 ~~~vlh~~~d~~~~~iL~~~~~aL-~pgg~l~i 44 (112)
...+-|-+++++.+.||.+|..-. ....++.+
T Consensus 82 ~gQvs~Kise~~lisiLe~is~Qt~qk~tkV~f 114 (129)
T KOG3431|consen 82 TGQVSHKISEAELISILEKISAQTNQKNTKVKF 114 (129)
T ss_pred hCCccccccHHHHHHHHHHHHHhhccccceeee
Confidence 356788999999999999999887 44555544
No 455
>PF14794 DUF4479: Domain of unknown function (DUF4479); PDB: 3BU2_C.
Probab=21.62 E-value=80 Score=17.53 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=9.2
Q ss_pred HHHHHHHHhcCCCee
Q 038113 82 HELMTLVTGAGFGGI 96 (112)
Q Consensus 82 ~e~~~ll~~aGf~~~ 96 (112)
+.+.++|+++||...
T Consensus 54 ~~LN~~l~~~Gf~~~ 68 (73)
T PF14794_consen 54 AKLNQALQKAGFDEE 68 (73)
T ss_dssp HHHHHHHHHTT----
T ss_pred HHHHHHHHHcCCCce
Confidence 467788999999864
No 456
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=21.56 E-value=1.2e+02 Score=21.54 Aligned_cols=21 Identities=10% Similarity=0.170 Sum_probs=17.7
Q ss_pred HHHHHHHhhCCCCCEEEEEee
Q 038113 27 KLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 27 ~iL~~~~~aL~pgg~l~i~e~ 47 (112)
..++...+.|++||+++++-.
T Consensus 237 ~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 237 SAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred HHHHHHHHhCcCCcEEEEEee
Confidence 467888899999999998864
No 457
>PF02794 HlyC: RTX toxin acyltransferase family; InterPro: IPR003996 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior []. Four principal exotoxin secretion systems have been described. In the type II and IV secretion systems, toxins are first exported to the periplasm by way of a cleaved N-terminal signal sequence; a second set of proteins is used for extracellular transport (type II), or the C terminus of the exotoxin itself is used (type IV). Type III secretion involves at least 20 molecules that assemble into a needle; effector proteins are then translocated through this without need of a signal sequence. In the Type I system, a complete channel is formed through both membranes, and the secretion signal is carried on the C terminus of the exotoxin. The RTX (repeats in toxin) family of cytolytic toxins belong to the Type I secretion system, and are important virulence factors in Gram-negative bacteria. As well as the C-terminal signal sequence, several glycine-rich repeats are also found. These are essential for binding calcium, and are critical for the biological activity of the secreted toxins []. All RTX toxin operons exist in the order rtxCABD, RtxA protein being the structural component of the exotoxin, both RtxB and D being required for its export from the bacterial cell; RtxC is an acyl-carrier-protein-dependent acyl- modification enzyme, required to convert RtxA to its active form []. Escherichia coli haemolysin (HlyA) is often quoted as the model for RTX toxins. Recent work on its relative rtxC gene product HlyC [] has revealed that it provides the acylation aspect for post-translational modification of two internal lysine residues in the HlyA protein. Other residues, including His23 and two conserved tyrosine residues, also appear to be important []. ; GO: 0016746 transferase activity, transferring acyl groups, 0009404 toxin metabolic process, 0005737 cytoplasm
Probab=21.53 E-value=1.8e+02 Score=18.15 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=26.7
Q ss_pred EEEeccccccCChHHHHHHHHHHHhhCC----CCCEEEEEeeecCCC
Q 038113 10 AIYMKWILHDWSDEHCLKLFKKCYKSIP----KDGMVIIVETILPKL 52 (112)
Q Consensus 10 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~----pgg~l~i~e~~~~~~ 52 (112)
+.++++.. ++++--.++++.-...+. +|.++.|+|.+.|-.
T Consensus 47 vaf~~WA~--ls~e~e~~~l~~~~~l~~~dW~sG~rlWiiD~iAPfG 91 (133)
T PF02794_consen 47 VAFCSWAF--LSEEAEARYLEDPRSLSPEDWNSGDRLWIIDWIAPFG 91 (133)
T ss_pred EEEEEhhc--CCHHHHHHHHcCCCCCCchhcCCCCeEEEEEEECCCC
Confidence 34555554 555555667766554333 489999999999854
No 458
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=21.53 E-value=1.7e+02 Score=21.83 Aligned_cols=27 Identities=7% Similarity=0.035 Sum_probs=18.5
Q ss_pred CceecCHHHHHHHHHh-cCCCeeEEEEe
Q 038113 75 GGKERTKHELMTLVTG-AGFGGIRFESF 101 (112)
Q Consensus 75 ~g~~rt~~e~~~ll~~-aGf~~~~~~~~ 101 (112)
.|+.-+.+++++.|++ -+++.+.+.+.
T Consensus 113 wg~~v~p~~v~~~L~~~~~~~~V~~vH~ 140 (383)
T COG0075 113 WGEAVDPEEVEEALDKDPDIKAVAVVHN 140 (383)
T ss_pred CCCCCCHHHHHHHHhcCCCccEEEEEec
Confidence 4566688888888883 36666666654
No 459
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=21.52 E-value=1.1e+02 Score=21.67 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=19.3
Q ss_pred cCHHHHHHHHHhcCCCeeEEEEe
Q 038113 79 RTKHELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 79 rt~~e~~~ll~~aGf~~~~~~~~ 101 (112)
.+.+++.++++++||..++..+.
T Consensus 283 ~~~~~l~~~~~~~g~~~~~r~~~ 305 (309)
T TIGR00423 283 LTVEELIEAIKDAGRVPAQRDTL 305 (309)
T ss_pred CCHHHHHHHHHHcCCCeeecCCC
Confidence 47899999999999998876544
No 460
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=21.21 E-value=92 Score=17.89 Aligned_cols=23 Identities=4% Similarity=0.234 Sum_probs=19.0
Q ss_pred HHHHHHHHhhCCCCCEEEEEeee
Q 038113 26 LKLFKKCYKSIPKDGMVIIVETI 48 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~l~i~e~~ 48 (112)
.+++++-...|.+|+.|++-+--
T Consensus 38 ~~v~~~y~~~l~~GavLlLk~V~ 60 (86)
T PF15072_consen 38 RKVLEEYGDELSPGAVLLLKDVT 60 (86)
T ss_pred HHHHhhcCCccccCEEEEEeeee
Confidence 46788878899999999998853
No 461
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=21.18 E-value=61 Score=18.44 Aligned_cols=20 Identities=15% Similarity=0.511 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHhhCCCCCE
Q 038113 22 DEHCLKLFKKCYKSIPKDGM 41 (112)
Q Consensus 22 d~~~~~iL~~~~~aL~pgg~ 41 (112)
..++..+|+.+++||+.-|.
T Consensus 14 ~~~~~~iL~~Vy~AL~EKGY 33 (79)
T PF06135_consen 14 EKEIREILKQVYAALEEKGY 33 (79)
T ss_pred hhhHHHHHHHHHHHHHHcCC
Confidence 45689999999999997554
No 462
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=21.10 E-value=2.3e+02 Score=18.86 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=19.2
Q ss_pred CCceecCHHHHHHHHHhcCCCeeEE
Q 038113 74 PGGKERTKHELMTLVTGAGFGGIRF 98 (112)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~~~~~ 98 (112)
..|..++.++..+.+++.|...+-+
T Consensus 202 a~GGi~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 202 ALGGAGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEE
Confidence 3677789999999888888766543
No 463
>PF14001 YdfZ: YdfZ protein
Probab=21.09 E-value=61 Score=17.62 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=12.9
Q ss_pred HHhhCCCCCEEEEEee
Q 038113 32 CYKSIPKDGMVIIVET 47 (112)
Q Consensus 32 ~~~aL~pgg~l~i~e~ 47 (112)
=+.++.+|+++++...
T Consensus 6 nRN~i~~G~rVMiagt 21 (64)
T PF14001_consen 6 NRNAITTGSRVMIAGT 21 (64)
T ss_pred ccCcCCCCCEEEEcCC
Confidence 3678999999998765
No 464
>PRK08868 flagellar protein FlaG; Provisional
Probab=21.02 E-value=1.2e+02 Score=19.38 Aligned_cols=27 Identities=19% Similarity=0.463 Sum_probs=21.1
Q ss_pred ccccCChHHHHHHHHHHHhhCCCCCEE
Q 038113 16 ILHDWSDEHCLKLFKKCYKSIPKDGMV 42 (112)
Q Consensus 16 vlh~~~d~~~~~iL~~~~~aL~pgg~l 42 (112)
|+..+|.++..++.+++.+.....|.|
T Consensus 114 VIRQIP~Ee~L~la~~l~e~~~~~GLl 140 (144)
T PRK08868 114 IIRQIPDEEMLEVLRRLAEQAHNSGLL 140 (144)
T ss_pred eeeeCCCHHHHHHHHHHHHhhhcccce
Confidence 678899999999999998655555633
No 465
>KOG3451 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.87 E-value=1.1e+02 Score=16.80 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHhhCCCCCEEEEEee
Q 038113 22 DEHCLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 22 d~~~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
|....+++=++-+.+.+|.+++|-|.
T Consensus 13 Dp~~kqlilnmd~sm~~~skfii~eL 38 (71)
T KOG3451|consen 13 DPAFKQLILNMDDSMQLGSKFIIEEL 38 (71)
T ss_pred ChhHHHHhhhccccCCCCCCeeEEEe
Confidence 45567888888999999999988764
No 466
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=20.85 E-value=1.2e+02 Score=17.59 Aligned_cols=38 Identities=8% Similarity=0.220 Sum_probs=20.9
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 038113 9 DAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVETILPK 51 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~~~~ 51 (112)
|++++- ..+.++. ..|..+...++-||.+++.-+-...
T Consensus 13 ~~~i~d-~~~g~~p----nal~a~~gtv~gGGllill~p~~~~ 50 (92)
T PF08351_consen 13 DLLIFD-AFEGFDP----NALAALAGTVRGGGLLILLLPPWES 50 (92)
T ss_dssp SSEEEE--SS---H----HHHHHHHTTB-TT-EEEEEES-GGG
T ss_pred CEEEEE-ccCCCCH----HHHHHHhcceecCeEEEEEcCCHHH
Confidence 444333 3345554 4778888899999999998654443
No 467
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=20.74 E-value=1.2e+02 Score=22.27 Aligned_cols=22 Identities=9% Similarity=0.064 Sum_probs=19.1
Q ss_pred HHHHHHHhhCCCCCEEEEEeee
Q 038113 27 KLFKKCYKSIPKDGMVIIVETI 48 (112)
Q Consensus 27 ~iL~~~~~aL~pgg~l~i~e~~ 48 (112)
..++.+.+.+++||+++++-..
T Consensus 280 ~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 280 TVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred HHHHHHHHHhhCCCEEEEeeec
Confidence 5788889999999999998764
No 468
>PF01536 SAM_decarbox: Adenosylmethionine decarboxylase; InterPro: IPR001985 S-adenosylmethionine decarboxylase (AdoMetDC) [] catalyzes the removal of the carboxylate group of S-adenosylmethionine to form S-adenosyl-5'-3-methylpropylamine which then acts as the n-propylamine group donor in the synthesis of the polyamines spermidine and spermine from putrescine. The catalytic mechanism of AdoMetDC involves a covalently-bound pyruvoyl group. This group is post-translationally generated by a self-catalyzed intramolecular proteolytic cleavage reaction between a glutamate and a serine. This cleavage generates two chains, beta (N-terminal) and alpha (C-terminal). The N-terminal serine residue of the alpha chain is then converted by nonhydrolytic serinolysis into a pyruvyol group.; GO: 0004014 adenosylmethionine decarboxylase activity, 0006597 spermine biosynthetic process, 0008295 spermidine biosynthetic process; PDB: 3EP7_A 3EPA_B 3DZ5_A 3DZ2_B 3EPB_B 3DZ7_A 3EP6_A 3EP4_A 1JEN_A 3H0V_B ....
Probab=20.73 E-value=1.9e+02 Score=21.13 Aligned_cols=26 Identities=12% Similarity=-0.106 Sum_probs=19.2
Q ss_pred eecCHHHHHHHHHhcCCCeeEEEEeC
Q 038113 77 KERTKHELMTLVTGAGFGGIRFESFI 102 (112)
Q Consensus 77 ~~rt~~e~~~ll~~aGf~~~~~~~~~ 102 (112)
+..+.++|.++|+.|+-+++......
T Consensus 31 R~i~~~~w~~~L~~a~C~Ils~~sn~ 56 (331)
T PF01536_consen 31 RSIPREFWDEMLDLAGCEILSEISNE 56 (331)
T ss_dssp GGS-HHHHHHHHHHCT-EEEEEEE-S
T ss_pred ccCCHHHHHHHHHhcCCEEEEEEccC
Confidence 44589999999999999998877643
No 469
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=20.70 E-value=2.3e+02 Score=19.91 Aligned_cols=71 Identities=20% Similarity=0.188 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhCCCC-CEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCc-eecCHHHHHHHHHhcCCCeeEE
Q 038113 25 CLKLFKKCYKSIPKD-GMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGG-KERTKHELMTLVTGAGFGGIRF 98 (112)
Q Consensus 25 ~~~iL~~~~~aL~pg-g~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~rt~~e~~~ll~~aGf~~~~~ 98 (112)
.-.+||++-+.|... --++|+|+-..=+.-+.- .....|...++..+.- -.+|.+..++|-+++||+.+-+
T Consensus 118 ~~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg---~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~ 190 (255)
T COG3640 118 MNALLRRLLRHLILNRYEVVIVDTEAGIEHFGRG---TIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFV 190 (255)
T ss_pred HHHHHHHHHHHHhcccCcEEEEecccchhhhccc---cccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEE
Confidence 356888888877776 788888875543322110 1233555555433222 2468889999999999776544
No 470
>PF08676 MutL_C: MutL C terminal dimerisation domain; InterPro: IPR014790 MutL and MutS are key components of the DNA repair machinery that corrects replication errors []. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signalling complex for repair. The N-terminal region of MutL contains the ATPase domain and the C-terminal is involved in dimerisation []. ; GO: 0005524 ATP binding, 0006298 mismatch repair; PDB: 3NCV_B 1X9Z_B 3GAB_C 3KDK_A 3KDG_A.
Probab=20.69 E-value=2.1e+02 Score=17.36 Aligned_cols=17 Identities=18% Similarity=0.003 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCCeeE
Q 038113 81 KHELMTLVTGAGFGGIR 97 (112)
Q Consensus 81 ~~e~~~ll~~aGf~~~~ 97 (112)
..++.+.|++.||....
T Consensus 68 l~~~~~~L~~~Gf~~~~ 84 (144)
T PF08676_consen 68 LEENKEELEKLGFEIEE 84 (144)
T ss_dssp HHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHhCCeEEEE
Confidence 56889999999998764
No 471
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.65 E-value=92 Score=23.70 Aligned_cols=18 Identities=28% Similarity=0.711 Sum_probs=15.8
Q ss_pred cccCChHHHHHHHHHHHh
Q 038113 17 LHDWSDEHCLKLFKKCYK 34 (112)
Q Consensus 17 lh~~~d~~~~~iL~~~~~ 34 (112)
-|+|+|+|..-+|++++.
T Consensus 454 T~~W~d~eIellLseA~~ 471 (484)
T KOG1092|consen 454 THNWSDREIELLLSEAFR 471 (484)
T ss_pred CCCccHHHHHHHHHHHHH
Confidence 489999999999999875
No 472
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=20.57 E-value=44 Score=21.45 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=18.1
Q ss_pred eecCHHHHHHHHHhcCCCeeEEE
Q 038113 77 KERTKHELMTLVTGAGFGGIRFE 99 (112)
Q Consensus 77 ~~rt~~e~~~ll~~aGf~~~~~~ 99 (112)
...+.+++.+.|.++||...++.
T Consensus 19 ~~~d~~~L~~~L~~aGF~~~eI~ 41 (155)
T PF04361_consen 19 ACPDQDDLTRELSAAGFEDEEIN 41 (155)
T ss_pred cCCCHHHHHHHHHHcCCCHHHHH
Confidence 34578899999999999876653
No 473
>TIGR03318 YdfZ_fam putative selenium-binding protein YdfZ. This small protein has a very limited distribution, being found so far only among some gamma-Proteobacteria. The member from Escherichia coli was shown to bind selenium in the absence of a working SelD-dependent selenium incorporation system. Note that while the E. coli member contains a single Cys residue, a likely selenium binding site, some other members of this protein family contain two Cys residues or none.
Probab=20.54 E-value=78 Score=17.20 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=13.4
Q ss_pred HHHhhCCCCCEEEEEee
Q 038113 31 KCYKSIPKDGMVIIVET 47 (112)
Q Consensus 31 ~~~~aL~pgg~l~i~e~ 47 (112)
+=+.++.+|++++|.-.
T Consensus 6 RnRNait~G~rVMia~t 22 (65)
T TIGR03318 6 RNRNAITTGSRVMIAGT 22 (65)
T ss_pred ccccccCCCcEEEEecC
Confidence 34678999999998754
No 474
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=20.50 E-value=73 Score=20.91 Aligned_cols=20 Identities=15% Similarity=0.434 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhCCCCCEE
Q 038113 23 EHCLKLFKKCYKSIPKDGMV 42 (112)
Q Consensus 23 ~~~~~iL~~~~~aL~pgg~l 42 (112)
+....+++++++++.|.|.+
T Consensus 224 ~~~~~~~~~iK~~~DP~~il 243 (248)
T PF02913_consen 224 PAALRLMRAIKQAFDPNGIL 243 (248)
T ss_dssp HHHHHHHHHHHHHH-TTS-B
T ss_pred hHHHHHHHHhhhccCCccCC
Confidence 34678999999999998764
No 475
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=20.49 E-value=1.2e+02 Score=21.34 Aligned_cols=22 Identities=9% Similarity=0.279 Sum_probs=18.1
Q ss_pred HHHHHHHhhCCCCCEEEEEeee
Q 038113 27 KLFKKCYKSIPKDGMVIIVETI 48 (112)
Q Consensus 27 ~iL~~~~~aL~pgg~l~i~e~~ 48 (112)
..++...++|++||+++++-..
T Consensus 235 ~~~~~~~~~l~~~G~~v~~G~~ 256 (329)
T TIGR02822 235 GLVPPALEALDRGGVLAVAGIH 256 (329)
T ss_pred HHHHHHHHhhCCCcEEEEEecc
Confidence 4688888999999999887653
No 476
>COG5125 Uncharacterized conserved protein [Function unknown]
Probab=20.42 E-value=3e+02 Score=18.87 Aligned_cols=30 Identities=10% Similarity=0.122 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEeeecCCCC
Q 038113 24 HCLKLFKKCYKSIPKDGMVIIVETILPKLP 53 (112)
Q Consensus 24 ~~~~iL~~~~~aL~pgg~l~i~e~~~~~~~ 53 (112)
+..+.+.++.+.|.|.|++-..-++.++..
T Consensus 161 e~~K~~~~iSrlL~~~g~~N~fKFIidP~S 190 (259)
T COG5125 161 EEPKILAQISRLLAEKGRTNYFKFIIDPRS 190 (259)
T ss_pred chhhHHHHHHHHhcccCCcceeEEecCcch
Confidence 367899999999999999988888887653
No 477
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=20.35 E-value=1.6e+02 Score=16.27 Aligned_cols=20 Identities=10% Similarity=0.242 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCCeeEEEEe
Q 038113 82 HELMTLVTGAGFGGIRFESF 101 (112)
Q Consensus 82 ~e~~~ll~~aGf~~~~~~~~ 101 (112)
+++.+-|++.||++..++.+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m 21 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNM 21 (69)
T ss_pred HHHHHHHHHcCCceeEEEcc
Confidence 47788899999999988755
No 478
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=20.35 E-value=2.5e+02 Score=19.00 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=21.5
Q ss_pred cEEEe-cccc-ccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 038113 9 DAIYM-KWIL-HDWSDEHCLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 9 D~v~~-~~vl-h~~~d~~~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
|+++. ++.- ..+++++..++.+.+. .||-|+.+..
T Consensus 60 D~lV~~~~~~~~~l~~eq~~~l~~~V~----~GgGlv~lHs 96 (215)
T cd03142 60 DVLLWWGHIAHDEVKDEIVERVHRRVL----DGMGLIVLHS 96 (215)
T ss_pred CEEEEeCCCCcCcCCHHHHHHHHHHHH----cCCCEEEECC
Confidence 88886 3443 4577776555555544 4766666664
No 479
>PHA01782 hypothetical protein
Probab=20.35 E-value=34 Score=22.31 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=13.9
Q ss_pred HHHHHHHHhhCCCCCE
Q 038113 26 LKLFKKCYKSIPKDGM 41 (112)
Q Consensus 26 ~~iL~~~~~aL~pgg~ 41 (112)
+.+.++++++|+.|+|
T Consensus 53 Vt~a~kL~~aMPKGsR 68 (177)
T PHA01782 53 VTVAKKLYEAMPKGSR 68 (177)
T ss_pred HHHHHHHHHHccccch
Confidence 7889999999999865
No 480
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=20.33 E-value=1e+02 Score=18.57 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=19.2
Q ss_pred CCceecCHHHHHHHHHhcCCCee
Q 038113 74 PGGKERTKHELMTLVTGAGFGGI 96 (112)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~~~ 96 (112)
..|+..|.+.+..+|+.+|-++.
T Consensus 12 ~~g~~it~e~I~~IL~AAGveVe 34 (106)
T PRK06402 12 SAGKEINEDNLKKVLEAAGVEVD 34 (106)
T ss_pred hcCCCCCHHHHHHHHHHcCCCcc
Confidence 36778899999999999996654
No 481
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=20.33 E-value=87 Score=16.89 Aligned_cols=18 Identities=6% Similarity=0.154 Sum_probs=13.5
Q ss_pred HhhCCCCCEEEEEeeecC
Q 038113 33 YKSIPKDGMVIIVETILP 50 (112)
Q Consensus 33 ~~aL~pgg~l~i~e~~~~ 50 (112)
.++|+||.+++|.=...+
T Consensus 35 ~~~L~~G~kV~V~yd~~~ 52 (61)
T PF07076_consen 35 FDGLKPGMKVVVFYDEVD 52 (61)
T ss_pred ccccCCCCEEEEEEEccC
Confidence 578999999988754443
No 482
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=20.23 E-value=1.2e+02 Score=17.98 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=20.0
Q ss_pred CCceecCHHHHHHHHHhcCCCeeE
Q 038113 74 PGGKERTKHELMTLVTGAGFGGIR 97 (112)
Q Consensus 74 ~~g~~rt~~e~~~ll~~aGf~~~~ 97 (112)
..+...|.+++..+|+.+|.++..
T Consensus 13 d~~~~~Tae~I~~ilkAaGveve~ 36 (103)
T cd05831 13 DDGIEITADNINALLKAAGVNVEP 36 (103)
T ss_pred cCCCCCCHHHHHHHHHHcCCcccH
Confidence 478888999999999999976543
No 483
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=20.19 E-value=1.3e+02 Score=20.41 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=23.5
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 038113 8 GDAIYMKWILHDWSDEHCLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 8 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
+|+|++.==++.++ .+++.+++++. |+++|--.
T Consensus 61 aDVVvLAVP~~a~~-----~v~~~l~~~~~--~KIvID~t 93 (211)
T COG2085 61 ADVVVLAVPFEAIP-----DVLAELRDALG--GKIVIDAT 93 (211)
T ss_pred CCEEEEeccHHHHH-----hHHHHHHHHhC--CeEEEecC
Confidence 48988876665554 48888888876 78876433
No 484
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=20.19 E-value=1.6e+02 Score=16.23 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=17.1
Q ss_pred cCChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 038113 19 DWSDEHCLKLFKKCYKSIPKDGMVIIVETI 48 (112)
Q Consensus 19 ~~~d~~~~~iL~~~~~aL~pgg~l~i~e~~ 48 (112)
.++.+++.++|+. .+.|..+|-+..
T Consensus 6 ~i~r~~Ae~~L~~-----~~~G~FLiR~s~ 30 (94)
T cd00173 6 PISREEAEELLKK-----KPDGTFLVRDSE 30 (94)
T ss_pred CCCHHHHHHHHhc-----CCCceEEEEecC
Confidence 4677888899887 455666665543
No 485
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=20.15 E-value=2.4e+02 Score=18.16 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=19.0
Q ss_pred ChHHHHHHHHHHHhhCCCCCEEEEEee
Q 038113 21 SDEHCLKLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 21 ~d~~~~~iL~~~~~aL~pgg~l~i~e~ 47 (112)
+|+-+..+.+.+.+...++++++++-.
T Consensus 8 s~~T~~~l~~~l~~~~~~~~~iaclst 34 (162)
T PF10237_consen 8 SDETAEFLARELLDGALDDTRIACLST 34 (162)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 455577777777777667778877653
No 486
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=20.10 E-value=1.3e+02 Score=20.58 Aligned_cols=23 Identities=13% Similarity=0.495 Sum_probs=18.5
Q ss_pred HHHHHHHhhCCCCCEEEEEeeec
Q 038113 27 KLFKKCYKSIPKDGMVIIVETIL 49 (112)
Q Consensus 27 ~iL~~~~~aL~pgg~l~i~e~~~ 49 (112)
..++.+.+.|+|+|+++++-...
T Consensus 199 ~~~~~~~~~l~~~G~iv~~G~~~ 221 (280)
T TIGR03366 199 AAVRACLESLDVGGTAVLAGSVF 221 (280)
T ss_pred HHHHHHHHHhcCCCEEEEeccCC
Confidence 46777889999999999887543
No 487
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=20.08 E-value=1.2e+02 Score=21.46 Aligned_cols=21 Identities=14% Similarity=0.370 Sum_probs=17.5
Q ss_pred HHHHHHHhhCCCCCEEEEEee
Q 038113 27 KLFKKCYKSIPKDGMVIIVET 47 (112)
Q Consensus 27 ~iL~~~~~aL~pgg~l~i~e~ 47 (112)
..++.+.++|++||+++++-.
T Consensus 247 ~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 247 SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred HHHHHHHHHhhcCCEEEEEcc
Confidence 467778889999999998864
No 488
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=20.04 E-value=2.1e+02 Score=21.23 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=38.7
Q ss_pred cEEEeccccccCChHH-HHHHHHHHHhhCCC-CCEEEEEeeecCCCCCCchhhhhhhhhchhhhhcCCCce---ecCHHH
Q 038113 9 DAIYMKWILHDWSDEH-CLKLFKKCYKSIPK-DGMVIIVETILPKLPETRTLSKIISQGDVLMMTQNPGGK---ERTKHE 83 (112)
Q Consensus 9 D~v~~~~vlh~~~d~~-~~~iL~~~~~aL~p-gg~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~rt~~e 83 (112)
-+|+-..-+-+++|++ ...+++.+.+.++. ++..+-+|+.+..... +. +|. ....++
T Consensus 64 ~~yiprGPv~d~~d~ell~~f~~~Lk~~akk~~a~~lridP~~~~~~~-----------~~-------~g~~~~~~~~~~ 125 (406)
T PF02388_consen 64 YAYIPRGPVMDYSDEELLEFFLEELKKYAKKKRALFLRIDPNVIYQER-----------DE-------DGEPIEGEENDE 125 (406)
T ss_dssp EEEETT--EC-TT-HHHHHHHHHHHHHHHCTTTEEEEEE--S-EEECE------------T-------TS-EEEE-S-TH
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEeCchhhhhc-----------cc-------ccccccCcchHH
Confidence 4455555666888766 78889999998888 6666667765543210 00 111 234567
Q ss_pred HHHHHHhcCCCeeE
Q 038113 84 LMTLVTGAGFGGIR 97 (112)
Q Consensus 84 ~~~ll~~aGf~~~~ 97 (112)
+.+.|+++||....
T Consensus 126 ~~~~l~~~G~~~~g 139 (406)
T PF02388_consen 126 LIENLKALGFRHQG 139 (406)
T ss_dssp HHHHHHHTT-CCTS
T ss_pred HHHHHHhcCceecC
Confidence 88888889988643
No 489
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=20.01 E-value=1.8e+02 Score=16.56 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.1
Q ss_pred CceecCHHHHHHHHHhcC
Q 038113 75 GGKERTKHELMTLVTGAG 92 (112)
Q Consensus 75 ~g~~rt~~e~~~ll~~aG 92 (112)
..+.|.+.|++.||++.=
T Consensus 55 t~kqRrE~EV~~LLeKip 72 (80)
T PF08149_consen 55 TKKQRREREVRSLLEKIP 72 (80)
T ss_pred chhHHhHHHHHHHHHhCC
Confidence 567889999999998754
Done!