BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038114
(170 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|147784524|emb|CAN61725.1| hypothetical protein VITISV_032420 [Vitis vinifera]
Length = 763
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 74/147 (50%), Positives = 100/147 (68%), Gaps = 6/147 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
Q L+NEA+ AF+FLQ T F + STYA LIS CS LRSL+ GRK+HDH+L SKS PD+
Sbjct: 40 QKLFNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHGRKIHDHMLKSKSHPDLT 99
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
LQN+ILNMYGKCGSL+DA+ V D MP+RNV+ SW ++IAG + A+ +
Sbjct: 100 LQNHILNMYGKCGSLKDAQKVFDAMPERNVV------SWTSVIAGYSQNGQGGNALEFYF 153
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNV 166
+M ++PD T S++ AC+S ++
Sbjct: 154 QMLQSGVMPDQFTFGSIIKACSSLGDI 180
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 60/142 (42%), Positives = 80/142 (56%), Gaps = 6/142 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F + + + + + S CSSL + GR++H + DV +
Sbjct: 248 EALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSL 307
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+MY KCG L ARVV + I PDL +WNAIIAG A +A EA++ FS+MR +
Sbjct: 308 CDMYAKCGLLSCARVVFYQ------IGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQ 361
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
LIPD +TVRSLLCACTSPS +
Sbjct: 362 GLIPDEITVRSLLCACTSPSEL 383
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 7/119 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +I CSSL + LGR++H H+L S+ ++ QN +++MY K + DA V M
Sbjct: 166 TFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNVIIDALDVFSRM 225
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL-IPDGLTVRSLLCACTS 162
R DL SW ++IAG + EA+ F EM + + +P+ S+ AC+S
Sbjct: 226 ATR------DLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSS 278
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 61/104 (58%), Gaps = 6/104 (5%)
Query: 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
S+++G +VH + L + D+ + N ++++Y KCGSL+ AR + D + +PD+ S
Sbjct: 484 SIEIGNQVHCYALKTGLNCDISVTNGLIDLYAKCGSLKTARKIFDS------VINPDVVS 537
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
W+++I G A EA+ LF MR ++ P+ +T +L AC+
Sbjct: 538 WSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACS 581
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T L+ C+S L G +VH +I DV + N +L MY KC L DA +EM
Sbjct: 369 TVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEM 428
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ DL SWNAI+ A E L M + PD +T+ ++L A
Sbjct: 429 RC-----NADLVSWNAILTACMHHDQAEEVFGLLKLMCISQHRPDYITLTNVLGA 478
>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Vitis vinifera]
Length = 755
Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 99/147 (67%), Gaps = 6/147 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
Q L+NEA+ AF+FLQ T F + STYA LIS CS LRSL+ G+K+HDH+L SKS PD+
Sbjct: 40 QKLFNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHGKKIHDHMLKSKSHPDLT 99
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
LQN+ILNMYGKC SL+DA+ V D MP+RNV+ SW ++IAG + A+ +
Sbjct: 100 LQNHILNMYGKCKSLKDAQKVFDAMPERNVV------SWTSVIAGYSQNGQGGNALEFYF 153
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNV 166
+M ++PD T S++ AC+S ++
Sbjct: 154 QMLQSGVMPDQFTFGSIIKACSSLGDI 180
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 80/142 (56%), Gaps = 6/142 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F + + + + + S CSSL + GR++H + DV +
Sbjct: 248 EALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSL 307
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+MY KCG L ARVV + I PDL +WNAIIAG A +A EA++ FS+MR +
Sbjct: 308 CDMYAKCGLLSCARVVFYQ------IGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQ 361
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
LIPD +TVRSLLCACTSPS +
Sbjct: 362 GLIPDEITVRSLLCACTSPSEL 383
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 7/119 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +I CSSL + LGR++H H+L S+ ++ QN +++MY K + DA V M
Sbjct: 166 TFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRM 225
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL-IPDGLTVRSLLCACTS 162
R DL SW ++IAG + EA+ F EM + + +P+ S+ AC+S
Sbjct: 226 ATR------DLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSS 278
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
Query: 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
S+++G +VH + L + D + N ++++Y KCGSL+ A + D M +PD+ S
Sbjct: 484 SIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMI------NPDVVS 537
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
W+++I G A EA+ LF MR ++ P+ +T +L AC+
Sbjct: 538 WSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACS 581
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+ C+S L G +VH +I DV + N +L MY KC L DA +EM
Sbjct: 373 LLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRC-- 430
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ DL SWNAI+ A E L M + PD +T+ ++L A
Sbjct: 431 ---NADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGA 478
>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53360, mitochondrial; Flags: Precursor
gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 768
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/152 (48%), Positives = 96/152 (63%), Gaps = 6/152 (3%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS 74
NS N Y EAL AFDF Q N++F+IR TY LI CSS RSL GRK+HDHIL+S
Sbjct: 39 NSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNSNC 98
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+ D +L N+IL+MYGKCGSL DAR V D MP+RN L S+ ++I G + EA
Sbjct: 99 KYDTILNNHILSMYGKCGSLRDAREVFDFMPERN------LVSYTSVITGYSQNGQGAEA 152
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+ L+ +M +L+PD S++ AC S S+V
Sbjct: 153 IRLYLKMLQEDLVPDQFAFGSIIKACASSSDV 184
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 6/114 (5%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
+ CSSL G ++H + S+ + + + +MY +CG L AR V D+
Sbjct: 277 LKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQ------ 330
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
IE PD ASWN IIAG+A+ A+EA+S+FS+MR IPD +++RSLLCA T P
Sbjct: 331 IERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKP 384
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T L+ C + SL+LG +VH + L + P+ ++N +++MY KCGSL AR + D M
Sbjct: 475 TMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSM 534
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R+V+ SW+ +I G A EA+ LF EM+ + P+ +T +L AC+
Sbjct: 535 DNRDVV------SWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACS 585
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 7/119 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
+ +I C+S + LG+++H ++ +S ++ QN ++ MY + + DA V +
Sbjct: 170 AFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGI 229
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCACTS 162
P + DL SW++IIAG + EA+S EM + P+ S L AC+S
Sbjct: 230 PMK------DLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSS 282
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
+L G ++H +I+ D+ + N +L MY C L + ++ RN + D S
Sbjct: 386 ALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDF--RN---NADSVS 440
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
WN I+ E + LF M E PD +T+ +LL C S++
Sbjct: 441 WNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSL 489
>gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 769
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 96/153 (62%), Gaps = 6/153 (3%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS 74
NS + Y EAL AFDF Q N++F+IR TY LI CSS RSL GRK+HDHIL+S
Sbjct: 36 NSLCRNSFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNSNC 95
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+ D +L N+IL+MYGKCGSL DAR V D MP+RN L S+ ++I G + EA
Sbjct: 96 KYDTILNNHILSMYGKCGSLRDAREVFDFMPERN------LVSYTSVITGYSQNGQEAEA 149
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
++L+ +M +L+PD S++ AC +V+
Sbjct: 150 ITLYLKMLQADLVPDQFAFGSIIKACACAGDVV 182
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 6/114 (5%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
+ CSSL G ++H + + + + + +MY +CG L+ AR V N
Sbjct: 274 LKACSSLLRPDYGSQIHGLCIKLELTGNAIAGCSLCDMYARCGFLDSARRV------FNQ 327
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
IE PD ASWN IIAG+A+ A+EA+S+FSEMR+ IPD +++RSLLCA T P
Sbjct: 328 IERPDTASWNVIIAGLANNGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQTKP 381
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T L+ C + SL+LG +VH + + + ++N +++MY KCGSL AR + D M
Sbjct: 472 TMGNLLRGCVEISSLKLGSQVHCYSWKTGLVLEQFIKNGLIDMYAKCGSLRQARRIFDSM 531
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++ D+ SW+ +I G A EA+ LF EM+ + P+ +T +L AC+
Sbjct: 532 ------DNGDVVSWSTLIVGYAQSGFGEEALILFREMKSSGIEPNHVTFVGVLTACS 582
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
+ +I C+ + LG+++H ++ +S ++ QN ++ MY + + DA V +
Sbjct: 167 AFGSIIKACACAGDVVLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASKVFYGI 226
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCACTS 162
P + DL SW++IIAG + EA+S EM + P+ S L AC+S
Sbjct: 227 PAK------DLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSS 279
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 53 CSSLRSLQL--GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI 110
C+ + + L G ++H I+ D+ + N +L MY C L + ++ +
Sbjct: 376 CAQTKPMALCQGMQIHSFIIKCGFLADLSVCNSLLTMYTFCSDLYCCFNLFEDFRNK--- 432
Query: 111 ESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
D SWNAI+ E + LF M E PD +T+ +LL C S++
Sbjct: 433 --ADSVSWNAILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSL 486
>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Glycine max]
Length = 855
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 92/147 (62%), Gaps = 6/147 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
Q Y EAL F+F N++ ++ STY LI C+S+RSL+ G+K+HDHIL S QPD+V
Sbjct: 134 QRHYREALDTFNFHPKNSSIQLESSTYGNLILACTSIRSLKYGKKIHDHILKSNCQPDLV 193
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
LQN+ILNMYGKCGSL+DAR D M RNV+ SW +I+G + N+A+ ++
Sbjct: 194 LQNHILNMYGKCGSLKDARKAFDTMQLRNVV------SWTIMISGYSQNGQENDAIIMYI 247
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNV 166
+M PD LT S++ AC ++
Sbjct: 248 QMLQSGYFPDPLTFGSIIKACCIAGDI 274
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 68/142 (47%), Gaps = 6/142 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F + ++ + + S C SL + GR++H +V +
Sbjct: 342 EALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSL 401
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+MY K G L A + IESPDL SWNAIIA + + NEA+ F +M
Sbjct: 402 CDMYAKFGFLPSAIRAFYQ------IESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHT 455
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
L+PDG+T SLLCAC SP +
Sbjct: 456 GLMPDGITFLSLLCACGSPVTI 477
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ TC+ L SL++G +VH + S DV + N +++MY KCGSL+ AR V
Sbjct: 565 TITTILGTCAELASLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGSLKHARDVFGS- 623
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++PD+ SW+++I G A +EA++LF M++ + P+ +T +L AC+
Sbjct: 624 -----TQNPDIVSWSSLIVGYAQFGLGHEALNLFRMMKNLGVQPNEVTYLGVLSACS 675
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ C S ++ G ++H +I+ + + N +L MY KC +L DA V
Sbjct: 463 TFLSLLCACGSPVTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVF--- 519
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++V E+ +L SWNAI++ A E LF M E PD +T+ ++L C
Sbjct: 520 --KDVSENANLVSWNAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCA 574
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P T+ +I C + LGR++H H++ S ++ QN +++MY + G + A V
Sbjct: 258 PLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDV-- 315
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSLLCACT 161
+I + DL SW ++I G EA+ LF +M R P+ S+ AC
Sbjct: 316 ----FTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACR 371
Query: 162 S 162
S
Sbjct: 372 S 372
>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 887
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 92/147 (62%), Gaps = 6/147 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
Q+ Y EAL AFDF N+N PSTY L+ C++ RSL +K+HDH+L S QP ++
Sbjct: 136 QHHYKEALEAFDFHLKNSNSHFEPSTYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSII 195
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
LQN+++NMYGKCGS++DAR V D M + P++ SW ++I+G + AN+A+ ++
Sbjct: 196 LQNHMINMYGKCGSMKDARKVFDTM------QLPNVVSWTSMISGYSQNGQANDAIIMYI 249
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNV 166
+M PD LT S++ AC ++
Sbjct: 250 QMTRSGQFPDQLTFGSVIKACYIAGDI 276
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F L ++ + + S CSSL L+ G++VH + + +V +
Sbjct: 344 EALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFGLRRNVFAGCSL 403
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+MY K G L A++ + I++PD+ SWNAIIA A +ANEA+ F +M
Sbjct: 404 CDMYAKFGFLPSAKMAFCQ------IKNPDIVSWNAIIAAFADNGDANEAIDFFRQMIHI 457
Query: 145 ELIPDGLTVRSLLCACTSP 163
L PD +T SLLC C SP
Sbjct: 458 GLTPDSITYISLLCTCGSP 476
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 7/135 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A DF + + + P TY L+ TC S L GR++H +I+ ++ + N +L
Sbjct: 447 AIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFDKEITVCNSLLT 506
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KC L DA V R++ + +L SWNAI++ E L+ EM
Sbjct: 507 MYTKCSHLHDALNVF-----RDISRNANLVSWNAILSACLQKKQEGETFRLYKEMHFSGN 561
Query: 147 IPDGLTVRSLLCACT 161
PD +T+ +LL C
Sbjct: 562 KPDSITITTLLGTCA 576
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T L+ TC+ L SL +G +VH + + S DV + N +++MY KCGSL+ AR V D
Sbjct: 567 TITTLLGTCAELTSLGVGNQVHCYSIKSGLILDVSVCNGLIDMYAKCGSLKHARDVFDS- 625
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++ D+ SW+++I G A +EA++LF M + + P+ +T L AC+
Sbjct: 626 -----TQNLDIVSWSSLIVGYAQCGLGHEALNLFRIMTNLGVQPNEVTYLGALSACS 677
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +I C + LGR++H H++ S + QN +++MY G +E A V +
Sbjct: 262 TFGSVIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRI 321
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE-MRDRELIPDGLTVRSLLCACTS 162
P + DL SW +I G EA+ LF + +R P+ S+ AC+S
Sbjct: 322 PTK------DLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSS 374
>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Glycine max]
Length = 777
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 93/147 (63%), Gaps = 6/147 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
Q Y EAL F+F N++ ++ PSTY LI C+++RSL+ G+++HDHIL S QPD+V
Sbjct: 57 QQHYREALDTFNFHLKNSSIQLEPSTYVNLILACTNVRSLKYGKRIHDHILKSNCQPDLV 116
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
LQN+ILNMYGKCGSL+DAR D M R+V+ SW +I+G + N+A+ ++
Sbjct: 117 LQNHILNMYGKCGSLKDARKAFDTMQLRSVV------SWTIMISGYSQNGQENDAIIMYI 170
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNV 166
+M PD LT S++ AC ++
Sbjct: 171 QMLRSGYFPDQLTFGSIIKACCIAGDI 197
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ TC+ L SL++G +VH + S DV + N +++MY KCG L+ AR V D
Sbjct: 487 TITTILGTCAELVSLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGLLKHARYVFDS- 545
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++PD+ SW+++I G A EA++LF MR+ + P+ +T +L AC+
Sbjct: 546 -----TQNPDIVSWSSLIVGYAQFGLGQEALNLFRMMRNLGVQPNEVTYLGVLSACS 597
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 69/139 (49%), Gaps = 7/139 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F + ++ + + S C SL + GR++ +V +
Sbjct: 265 EALYLFRDMFRQGVYQPNEFIFGSVFSACRSLLKPEFGRQIQGMCAKFGLGRNVFAGCSL 324
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+MY K G L A+ + IESPDL SWNAIIA +A+ S+ NEA+ F +M
Sbjct: 325 CDMYAKFGFLPSAKRAFYQ------IESPDLVSWNAIIAALAN-SDVNEAIYFFCQMIHM 377
Query: 145 ELIPDGLTVRSLLCACTSP 163
L+PD +T +LLCAC SP
Sbjct: 378 GLMPDDITFLNLLCACGSP 396
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ C S +L G ++H +I+ + N +L MY KC +L DA V
Sbjct: 385 TFLNLLCACGSPMTLNQGMQIHSYIIKMGLDKVAAVCNSLLTMYTKCSNLHDAFNVF--- 441
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+++ E+ +L SWNAI++ + EA LF M E PD +T+ ++L C
Sbjct: 442 --KDISENGNLVSWNAILSACSQHKQPGEAFRLFKLMLFSENKPDNITITTILGTCA 496
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +I C + LG ++H H++ S ++ QN +++MY K G + A V
Sbjct: 183 TFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNALISMYTKFGQIAHASDV---- 238
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSLLCACTS 162
+I + DL SW ++I G EA+ LF +M R P+ S+ AC S
Sbjct: 239 --FTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSACRS 295
>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 95/143 (66%), Gaps = 6/143 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
+NL+ EAL AFD Q ++ ++ TY LI+ CSSLRSL+ GRK+H H+L+ QPD++
Sbjct: 75 KNLHREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMI 134
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
LQN+IL+MYGKCGSL++AR + D MP +NV+ SW ++I+G + + A++L+
Sbjct: 135 LQNHILSMYGKCGSLKEARNMFDSMPLKNVV------SWTSMISGYSRYGEEDNAITLYV 188
Query: 140 EMRDRELIPDGLTVRSLLCACTS 162
+M IPD T S++ +C+
Sbjct: 189 QMLRSGHIPDHFTFGSIVKSCSG 211
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 75/139 (53%), Gaps = 6/139 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F + + + ++ + S CS L GR++H + D+ +
Sbjct: 283 EALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSL 342
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+MY KCG LE AR V IE PDL +WNAIIAG AS SNA E+ S FS+MR
Sbjct: 343 CDMYAKCGFLESARTVFYH------IEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHT 396
Query: 145 ELIPDGLTVRSLLCACTSP 163
L+P+ +TV SLLCAC+ P
Sbjct: 397 GLVPNDVTVLSLLCACSEP 415
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 8/124 (6%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
RI+P T ++ + + S ++G ++H I+ S D+ + N ++NMY KCGSLE A
Sbjct: 499 RIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECA 558
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R + D I +PD+ SW+++I G A EA LF MR + P+ +T +L
Sbjct: 559 RKMFDS------IGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGIL 612
Query: 158 CACT 161
AC+
Sbjct: 613 TACS 616
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 7/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ +CS L +L R++H H+L S+ D++ QN +++MY K + DA V
Sbjct: 201 TFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVF--- 257
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCACT 161
R +I+ DL SW ++IAG + EA+ F EM + + P+ S AC+
Sbjct: 258 -SRIIIK--DLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACS 312
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+ CS L G +VH +I+ D+ + N +L+MY KC +L DA V +++ +
Sbjct: 408 LLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNK- 466
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
D+ SWN ++ + A E + L M + PD +T+ ++L
Sbjct: 467 ----ADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVL 511
>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 95/143 (66%), Gaps = 6/143 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
+NL+ EAL AFD Q ++ ++ TY LI+ CSSLRSL+ GRK+H H+L+ QPD++
Sbjct: 75 KNLHREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMI 134
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
LQN+IL+MYGKCGSL++AR + D MP +NV+ SW ++I+G + + A++L+
Sbjct: 135 LQNHILSMYGKCGSLKEARNMFDSMPLKNVV------SWTSMISGYSRYGEEDNAITLYV 188
Query: 140 EMRDRELIPDGLTVRSLLCACTS 162
+M IPD T S++ +C+
Sbjct: 189 QMLRSGHIPDHFTFGSIVKSCSG 211
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 75/139 (53%), Gaps = 6/139 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F + + + ++ + S CS L GR++H + D+ +
Sbjct: 283 EALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSL 342
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+MY KCG LE AR V IE PDL +WNAIIAG AS SNA E+ S FS+MR
Sbjct: 343 CDMYAKCGFLESARTVFYH------IEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHT 396
Query: 145 ELIPDGLTVRSLLCACTSP 163
L+P+ +TV SLLCAC+ P
Sbjct: 397 GLVPNDVTVLSLLCACSEP 415
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 8/124 (6%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
RI+P T ++ + + S ++G ++H I+ S D+ + N ++NMY KCGSLE A
Sbjct: 499 RIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECA 558
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R + D I +PD+ SW+++I G A EA LF MR + P+ +T +L
Sbjct: 559 RKMFDS------IGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGIL 612
Query: 158 CACT 161
AC+
Sbjct: 613 TACS 616
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 7/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ +CS L +L R++H H+L S+ D++ QN +++MY K + DA V
Sbjct: 201 TFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVF--- 257
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCACT 161
R +I+ DL SW ++IAG + EA+ F EM + + P+ S AC+
Sbjct: 258 -SRIIIK--DLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACS 312
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T L+ CS L G +VH +I+ D+ + N +L+MY KC +L DA V +++
Sbjct: 404 TVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDI 463
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+ D+ SWN ++ + A E + L M + PD +T+ ++L
Sbjct: 464 GNK-----ADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVL 511
>gi|255583011|ref|XP_002532274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528034|gb|EEF30114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 631
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 78/125 (62%), Gaps = 8/125 (6%)
Query: 42 RPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP + C ++++C SL +L+LGR+VH + + + D+ LQN +++MY KCGSL DAR
Sbjct: 240 RPDGFVCTSILTSCGSLEALELGRQVHAYSIKGNVESDIFLQNGLIDMYAKCGSLNDARK 299
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V D+M RNV+ S+NA+I G ++ +EAM+LF EMR L P LT SLL A
Sbjct: 300 VFDDMTIRNVV------SYNALIEGYSTLEQLSEAMNLFREMRHGMLSPSFLTFVSLLGA 353
Query: 160 CTSPS 164
+ S
Sbjct: 354 SATLS 358
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 41 IRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ P Y + ++ CS L +Q G+++H H+L + DV N +++ Y K G ++ AR
Sbjct: 138 VVPDGYILSSVLGACSQLEFVQGGKQIHGHVLRRGIEIDVSFVNVLIDFYTKSGKVQSAR 197
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+ D M RNVI SW A+IAG S EA+ LF EM PDG S+L
Sbjct: 198 KLFDGMADRNVI------SWTAMIAGYMQNSFDREAVKLFIEMTRLGRRPDGFVCTSILT 251
Query: 159 ACTS 162
+C S
Sbjct: 252 SCGS 255
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV----V 100
T+A L + S+L SLQ G++ H+HI+ + N +++MY KCGSLEDAR V
Sbjct: 447 TFAALTTAASNLASLQHGQQFHNHIIKTGLDSHPFTTNSLIDMYAKCGSLEDARKAFGHV 506
Query: 101 SD------EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVR 154
D MP+ ++ P + +++ + EA +M P+ + R
Sbjct: 507 KDGLHYFESMPKFSI--KPGTEHYACVVSLLGRSGKLYEAKEFIEKMPTE---PEAVVWR 561
Query: 155 SLLCACTSPSNV 166
SLL AC NV
Sbjct: 562 SLLSACRVSGNV 573
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ ++L +L+LG+++H I ++ + +++ Y KC L DAR+V D+M
Sbjct: 346 TFVSLLGASATLSALELGKQIHALITKFGISMEIFAGSALIDFYSKCSCLMDARLVFDKM 405
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++ D+ WNA++ G EA+ L++E++ E P+ +T +L A +
Sbjct: 406 TEK------DIVVWNAMLFGYTQQLENEEALKLYTELQISEPKPNVVTFAALTTAAS 456
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 76/142 (53%), Gaps = 15/142 (10%)
Query: 24 NEALVAF-DFLQN-NTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
EAL+ F DF + N N P+ Y A +IS C + + +++H + S +V
Sbjct: 23 EEALLVFLDFKRCCNEN----PNEYILASVISACVQVGG-SIDKQMHGFAVKSGFDRNVY 77
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ ++++Y K G++++AR+V D + +++ + +W II + ++ LFS
Sbjct: 78 VGTSLVDLYAKGGNIDEARLVFDGLLEKSAV------TWTTIITACVKRGRSEVSLQLFS 131
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
+MR+ ++PDG + S+L AC+
Sbjct: 132 QMRETNVVPDGYILSSVLGACS 153
>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 694
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 57/144 (39%), Positives = 83/144 (57%), Gaps = 8/144 (5%)
Query: 19 IQN-LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+QN L EAL F ++ + R STYAC +S C+ L +L +GR+ H + S D
Sbjct: 426 VQNGLCVEALQHFVLMRRDAK-RADWSTYACCLSACADLAALHVGRQFHSLLARSGYIGD 484
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
N +++ Y KCG + +AR V DEMP +PD+ SWNA+I G AS + EA+S+
Sbjct: 485 SFAGNALISAYAKCGRILEARQVFDEMP------APDIVSWNALIDGYASNGHGTEAISV 538
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F EM D ++ PD +T +L AC+
Sbjct: 539 FREMEDNDVRPDEVTFVGVLSACS 562
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
P+VV +LN Y + G + +AR + D +P RNV A+WN +++G S+ EA
Sbjct: 227 PNVVSWVTLLNGYCRAGRIGEARELFDRIPDRNV------AAWNVMLSGYLRLSHMEEAY 280
Query: 136 SLFSEMRDRELI 147
LF+EM D+ I
Sbjct: 281 KLFTEMPDKNSI 292
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D V N +++ Y CG L++A V+ +MP + D+ SWN +IAG A +A+
Sbjct: 352 DAVCWNTMISGYVHCGMLDEAMVLFQQMPNK------DMVSWNTMIAGYAHDGQMRKAVG 405
Query: 137 LFSEMRDRELI 147
+F +M R +
Sbjct: 406 IFRKMNQRNTV 416
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 17/115 (14%)
Query: 57 RSLQLG--RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPD 114
RS QL R++ D + S + V N +L+ + G + DAR + DE+P+RN +
Sbjct: 23 RSGQLAAARRLFDSMPSRNT----VSYNAMLSALARHGRIADARRLFDEIPRRNTV---- 74
Query: 115 LASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYL 169
SWNA+IA + +A LF M R DG + +L+ +C + + L L
Sbjct: 75 --SWNAMIAACSDHGRVADARDLFDAMPAR----DGFS-WTLMVSCYARAGELGL 122
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++ ++S + L L R D + K N +++ Y K G +DA + EM
Sbjct: 106 SWTLMVSCYARAGELGLARDALDRMPGDKC---TACYNAMISGYAKHGRFDDAVALLREM 162
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
P +PD+ SWN+++ G+ A+ F EM R+++
Sbjct: 163 P------APDIISWNSVLVGLTRNGEMVRAVKFFDEMPARDMV 199
>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g24000, mitochondrial-like [Cucumis sativus]
Length = 677
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 51/123 (41%), Positives = 78/123 (63%), Gaps = 7/123 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+ Y+ +++ C+ LR L+ GR +H HI SS + D+VL N+ILNMY KCGSLE+A+ + D+
Sbjct: 106 TLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDK 165
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC-TS 162
MP + D+ SW +I+G + A+EA++LF +M P+ T+ SLL A T
Sbjct: 166 MPTK------DMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTG 219
Query: 163 PSN 165
PS+
Sbjct: 220 PSD 222
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 71/117 (60%), Gaps = 7/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY+ +++ C+S SL+ G+ VH H++ S QP + N +++MY K GS++DA+ V +
Sbjct: 309 TYSSVLA-CASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRL 367
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++ D+ SWN+II+G A EA+ LF +M ++ P+ +T S+L AC+
Sbjct: 368 VKQ------DIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACS 418
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+EAL F + + F+ T + L+ + S GR++H L +V + +
Sbjct: 188 SEALALFPKMLH-LGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSS 246
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+L+MY + + +A+V+ + + +NV+ SWNA+IAG A M LF +M
Sbjct: 247 LLDMYARWAHMREAKVIFNSLAAKNVV------SWNALIAGHARKGEGEHVMRLFXQMLR 300
Query: 144 RELIPDGLTVRSLLCACTSPS 164
+ P T S+L +S S
Sbjct: 301 QGFEPTHFTYSSVLACASSGS 321
>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Cucumis sativus]
Length = 678
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 51/123 (41%), Positives = 78/123 (63%), Gaps = 7/123 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+ Y+ +++ C+ LR L+ GR +H HI SS + D+VL N+ILNMY KCGSLE+A+ + D+
Sbjct: 106 TLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDK 165
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC-TS 162
MP + D+ SW +I+G + A+EA++LF +M P+ T+ SLL A T
Sbjct: 166 MPTK------DMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTG 219
Query: 163 PSN 165
PS+
Sbjct: 220 PSD 222
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY+ + + C+S SL+ G+ VH H++ S QP + N +++MY K GS++DA+ V +
Sbjct: 309 TYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRL 368
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++ D+ SWN+II+G A EA+ LF +M ++ P+ +T S+L AC+
Sbjct: 369 VKQ------DIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACS 419
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+EAL F + + F+ T + L+ + S GR++H L +V + +
Sbjct: 188 SEALALFPKMLH-LGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSS 246
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+L+MY + + +A+V+ + + +NV+ SWNA+IAG A M LF +M
Sbjct: 247 LLDMYARWAHMREAKVIFNSLAAKNVV------SWNALIAGHARKGEGEHVMRLFLQMLR 300
Query: 144 RELIPDGLTVRSLLCACTSPSNV 166
+ P T S+ AC S ++
Sbjct: 301 QGFEPTHFTYSSVFTACASSGSL 323
>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 727
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 78/134 (58%), Gaps = 9/134 (6%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A F + + P TY ++ CSSL +LQLGR VH+ + K++ +V +Q +++
Sbjct: 117 AIHFYHSMLQHGVTPDNYTYPLVLKACSSLHALQLGRWVHE-TMHGKTKANVYVQCAVID 175
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
M+ KCGS+EDAR + +EMP R DLASW A+I G EA+ LF +MR L
Sbjct: 176 MFAKCGSVEDARRMFEEMPDR------DLASWTALICGTMWNGECLEALLLFRKMRSEGL 229
Query: 147 IPDGLTVRSLLCAC 160
+PD + V S+L AC
Sbjct: 230 MPDSVIVASILPAC 243
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Query: 42 RPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP+ T ++ C+ + +L+ G+++H ++ S +V + N +++MY KCG LE
Sbjct: 432 RPNFITVVSILPICTQMGALRQGKEIHGYVTKSGLGLNVSVGNSLIDMYSKCGFLELGEK 491
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V +M RNV ++N +I+ S + ++ + +M++ P+ +T SLL A
Sbjct: 492 VFKQMMVRNV------TTYNTMISACGSHGQGEKGLAFYEQMKEEGNRPNKVTFISLLSA 545
Query: 160 CT 161
C+
Sbjct: 546 CS 547
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 54 SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESP 113
L L+ G+++H+ +L DVV+ + ++ MY CGS+++A + +
Sbjct: 345 GKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEAESIFE------CTSDK 398
Query: 114 DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
D+ WN++I G + A F + E P+ +TV S+L CT
Sbjct: 399 DIMVWNSMIVGYNLVGDFESAFFTFRRIWGAEHRPNFITVVSILPICT 446
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS-LEDARVVSDEMP 105
A ++ C L +++LG + + S + D+ + N +++MY KCG LE RV S
Sbjct: 237 ASILPACGRLEAVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSH--- 293
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ D+ SW+ +IAG + E+ L+ M + L + + S+L A
Sbjct: 294 ----MVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPA 343
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++N+Y GSL+ A + +P + +I +WNAI+ G+ + + +A+ + M
Sbjct: 73 LVNVYVNFGSLQHAFLTFRALPHKPII------AWNAILRGLVAVGHFTKAIHFYHSMLQ 126
Query: 144 RELIPDGLTVRSLLCACTS 162
+ PD T +L AC+S
Sbjct: 127 HGVTPDNYTYPLVLKACSS 145
>gi|222618802|gb|EEE54934.1| hypothetical protein OsJ_02489 [Oryza sativa Japonica Group]
Length = 309
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 82/138 (59%), Gaps = 9/138 (6%)
Query: 34 QNNTNFRIRPS---TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90
+++ R+R +YA + C++ R+L+ G+ +H +L S +PD L + +LNMY K
Sbjct: 48 RDDERLRLRAEELRSYAAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCK 107
Query: 91 CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDG 150
CG L DAR V D MP R+V+ +W A+++ + + +A A+ LF+EM + ++P+G
Sbjct: 108 CGRLADARSVFDGMPHRDVV------AWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNG 161
Query: 151 LTVRSLLCACTSPSNVLY 168
+ + L ACT S++ +
Sbjct: 162 FALAAALKACTVGSDLGF 179
>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 693
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 50/102 (49%), Positives = 64/102 (62%), Gaps = 6/102 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
STY LI CS R+L+ G+KVH+HI +S P +V+ N IL MY KCGSL DAR V DE
Sbjct: 88 STYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRILGMYAKCGSLVDARKVFDE 147
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
MP+R D+ SWN ++ G A EA +LF EM +R+
Sbjct: 148 MPER------DVCSWNVMVNGYAEVGLLEEARNLFDEMPERD 183
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 8/122 (6%)
Query: 42 RPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP+ T++ +++ C+ L + +LGR+VH ++ P + +++MY KCG++E AR
Sbjct: 318 RPNEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDPYSFASSSLIDMYTKCGNIESARH 377
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V D P+ PDL S ++I G A +EA+ F + PD +T ++L A
Sbjct: 378 VVDGCPK------PDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPDHVTFVNVLSA 431
Query: 160 CT 161
CT
Sbjct: 432 CT 433
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 74/136 (54%), Gaps = 6/136 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EALV + +Q N + T + ++ ++++ ++ G+++H HI+ + D VL + +
Sbjct: 202 EALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHGHIVRAGLDSDEVLWSSL 261
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MYGKCG +++AR + D++ ++V+ SW ++I S E SLFSE+
Sbjct: 262 MDMYGKCGCIDEARNIFDKIIDKDVV------SWTSMIDRYFKSSRWREGFSLFSELIGS 315
Query: 145 ELIPDGLTVRSLLCAC 160
P+ T +L AC
Sbjct: 316 CERPNEYTFSGVLNAC 331
>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 922
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 82/146 (56%), Gaps = 7/146 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
+ EA F +Q F+ TYA L++ C+ L G+++H I+ + + DV
Sbjct: 331 EGFMEEAFRLFRDMQQK-GFQPDRFTYASLLAICADRADLNRGKELHSQIVRTAWEADVT 389
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ +++MY KCGSLE+AR V ++MP++N + SWNA IA + EA +F
Sbjct: 390 VATALISMYAKCGSLEEARKVFNQMPEKNAV------SWNAFIACCCRHGSEKEAFQVFK 443
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSN 165
+MR ++IPD +T +LL +CTSP +
Sbjct: 444 QMRRDDVIPDHVTFITLLNSCTSPED 469
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 12/131 (9%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
+Q N NF YA + C +SL G+KVHDH+ S++ +PD+ L N +++MY KCG
Sbjct: 47 VQANLNF------YARRLQECVQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMYSKCG 100
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
S+EDA V M E D+ SWNA+I+G A EA+ LF +M+ L P+ +
Sbjct: 101 SIEDANNVFQSM------EDKDVVSWNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNS 154
Query: 153 VRSLLCACTSP 163
S+L AC +P
Sbjct: 155 FISILSACQTP 165
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 80/147 (54%), Gaps = 8/147 (5%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
L+ A D ++P+ ++ ++S C + L+ G ++H HI + + DV
Sbjct: 129 LHGRGQEAVDLFYQMQREGLKPNQNSFISILSACQTPIVLEFGEQIHSHITKAGYESDVN 188
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ ++NMY KCGSLE AR V +EM +RNV+ SW A+I+G ++ EA LF
Sbjct: 189 VSTALINMYCKCGSLELARKVFNEMRERNVV------SWTAMISGYVQHGDSKEAFVLFQ 242
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNV 166
++ P+ ++ S+L ACT+P+++
Sbjct: 243 KLIRSGTQPNKVSFASILGACTNPNDL 269
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 7/122 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++A ++ C++ L+ G K+H +I + + +V++ N +++MY +CGSL +AR V D +
Sbjct: 255 SFASILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQVFDNL 314
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
SP+ SWNA+IAG EA LF +M+ + PD T SLL C +
Sbjct: 315 ------RSPNRVSWNAMIAGYGE-GFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRA 367
Query: 165 NV 166
++
Sbjct: 368 DL 369
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ ++L L GRK+H + + + D+ + ++ MY KCGSL DA V +
Sbjct: 557 TFINVLRAIANLEDLDAGRKIHGLVEKAGLEKDIRILTTLIKMYSKCGSLRDAYSVFKNV 616
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+++V+ WNA++A + +A+ LF +MR + PD T S+L AC
Sbjct: 617 QEKDVV------CWNAMLAAYNHSDHGQDALKLFQQMRLEGVNPDSATYTSVLNACA 667
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+++C+S + GR +H I + ++ N +++MYG+CG L DAR V +
Sbjct: 456 TFITLLNSCTSPEDFERGRYIHGKIDQWGMLSNNLVANALISMYGRCGKLADAREVFYRI 515
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+R DL SWNA+IA A LF + + D T ++L A
Sbjct: 516 RRR------DLGSWNAMIAAYVQHGANGSAFDLFIKYKSEGGKGDKYTFINVLRA 564
>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
Length = 825
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 81/136 (59%), Gaps = 9/136 (6%)
Query: 34 QNNTNFRIRPS---TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90
+++ R+R +YA + C++ R+L+ G+ +H +L S +PD L + +LNMY K
Sbjct: 48 RDDERLRLRAEELRSYAAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCK 107
Query: 91 CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDG 150
CG L DAR V D MP R+V+ +W A+++ + + +A A+ LF+EM + ++P+G
Sbjct: 108 CGRLADARSVFDGMPHRDVV------AWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNG 161
Query: 151 LTVRSLLCACTSPSNV 166
+ + L ACT S++
Sbjct: 162 FALAAALKACTVGSDL 177
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
N R +T A +S CS L L G ++H + + S VV + +++MY KCG+L DA
Sbjct: 560 NKRPNDATLATSLSVCSDLACLGSGLQLHSYTIKSGWNSSVV-SSALVDMYVKCGNLADA 618
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
++ DE ++ DL WN II G A + +A+ F EM D +PD +T +L
Sbjct: 619 EMLFDES------DTHDLVEWNTIICGYAQHGHGYKALEAFQEMIDEGNVPDEITFVGVL 672
Query: 158 CACT 161
AC+
Sbjct: 673 SACS 676
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 8/136 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AFD ++ ++P+ T+ L S + L R +H HI+ S + + I+
Sbjct: 347 AFDIFMQMSDMGVKPNQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDAIVG 406
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY K G+++DA + D M + PD+ASWN +++G S +N + +F E+ +
Sbjct: 407 MYVKTGAVQDAILAFDLM------QGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGV 460
Query: 147 IPDGLTVRSLLCACTS 162
+ + T +L CTS
Sbjct: 461 LANKYTYVGILRCCTS 476
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY ++ C+SL L+ G +VH +L S Q D + +L+MY + G +AR+V D +
Sbjct: 466 TYVGILRCCTSLMDLRFGCQVHACVLKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRL 525
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+R+V SW +++ A +A+ F M P+ T+ + L C+
Sbjct: 526 KERDVF------SWTVVMSTYAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCS 576
Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 7/144 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y + ++ FD L + + I T ++ C L + G+ VH ++ + D VL N
Sbjct: 243 YAKVMLVFDKLVESGD-EISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLNN 301
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++ MY KC S EDA V I+ PD+ + +I+ A EA +F +M
Sbjct: 302 CLIEMYSKCLSAEDAYEVFAR------IDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMS 355
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
D + P+ T L + +V
Sbjct: 356 DMGVKPNQYTFVGLAIVASRTGDV 379
>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 691
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 49/102 (48%), Positives = 62/102 (60%), Gaps = 6/102 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
STY LI CS R+L+ G+KVH+HI +S P +V+ N +L MY KCGSL DAR V DE
Sbjct: 86 STYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDE 145
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
MP R DL SWN ++ G A EA LF EM +++
Sbjct: 146 MPNR------DLCSWNVMVNGYAEVGLLEEARKLFDEMTEKD 181
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 8/122 (6%)
Query: 42 RPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP+ T+A +++ C+ L + +LG++VH ++ P + +++MY KCG++E A+
Sbjct: 316 RPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKH 375
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V D P+ PDL SW ++I G A +EA+ F + PD +T ++L A
Sbjct: 376 VVDGCPK------PDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSA 429
Query: 160 CT 161
CT
Sbjct: 430 CT 431
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 75/136 (55%), Gaps = 6/136 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EALV + +Q N R T + ++ ++++ ++ G+++H HI+ + D VL + +
Sbjct: 200 EALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSL 259
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MYGKCG +++AR + D++ +++V+ SW ++I S E SLFSE+
Sbjct: 260 MDMYGKCGCIDEARNIFDKIVEKDVV------SWTSMIDRYFKSSRWREGFSLFSELVGS 313
Query: 145 ELIPDGLTVRSLLCAC 160
P+ T +L AC
Sbjct: 314 CERPNEYTFAGVLNAC 329
>gi|255543449|ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547798|gb|EEF49290.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 83/140 (59%), Gaps = 8/140 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AF+ Q +RP+ T L+ C+ L SL+LGR++H++ L + + V L +++
Sbjct: 246 AFELFQRMQLANVRPNGFTLVGLLRACTELGSLELGRRIHEYALENGFKVGVFLGTALID 305
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCGS+EDA+ V +EM +++ LA+WN++I + EA++LF++M + +
Sbjct: 306 MYSKCGSIEDAKKVFEEMQKKS------LATWNSMITSLGVHGFGKEALALFAQMEEANV 359
Query: 147 IPDGLTVRSLLCACTSPSNV 166
PD +T +L AC + +NV
Sbjct: 360 RPDAITFVGVLFACVNTNNV 379
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 25/142 (17%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +I C +L G++VH + + D L N ++++Y KCG L+ AR + D+M
Sbjct: 132 TFPFVIKACLDHSALDKGKEVHGFAIKTGFWKDTFLSNTLMDLYFKCGDLDYARKLFDKM 191
Query: 105 PQRNVI-----------------------ESP--DLASWNAIIAGVASPSNANEAMSLFS 139
R+V+ E P ++ SW A+I G EA LF
Sbjct: 192 AVRSVVSWTTFVAGLVACGELDTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFELFQ 251
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
M+ + P+G T+ LL ACT
Sbjct: 252 RMQLANVRPNGFTLVGLLRACT 273
>gi|148906116|gb|ABR16216.1| unknown [Picea sitchensis]
Length = 394
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 88/142 (61%), Gaps = 6/142 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL + +Q ++ TY+ +++ C+ L SL G+ ++D I+S + DV+++N +
Sbjct: 95 EALELYHQMQKVSSTNPDNYTYSSVLNACARLASLSEGKLIYDEIISKGCEMDVIVENAL 154
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+NM+ KCGS+EDAR V D+M +RN L SW A+++G A A+EA+ +F EM+
Sbjct: 155 INMFMKCGSIEDARRVFDKMCERN------LVSWTAMVSGYAQGGFADEALRMFYEMQGE 208
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
++ + +TV S+L AC S++
Sbjct: 209 DVKANYVTVASVLPACAQLSDL 230
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 7/136 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+EAL F +Q + + T A ++ C+ L LQ G+++H +I+ +V+ N
Sbjct: 196 DEALRMFYEMQGE-DVKANYVTVASVLPACAQLSDLQQGKEIHGYIIRRGLDLGIVVGNA 254
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+++MY KCGS+ A+ V D+M QR+V+ SWN IAG A +E M LF +M+
Sbjct: 255 LIDMYAKCGSIGSAQKVFDKMLQRDVV------SWNVAIAGYAQNGRFDECMELFRKMQC 308
Query: 144 RELIPDGLTVRSLLCA 159
L D +T +L+ A
Sbjct: 309 AGLKIDVITWNTLITA 324
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+ C+ ++L ++VH H+L + ++ +LN+Y KCGSL DAR+ D M +
Sbjct: 17 LLHLCTKAKTLAEAKQVHAHMLLTGILRIPSVETKLLNLYVKCGSLPDARLAFDNMTK-- 74
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCACT 161
D+ WN +I G EA+ L+ +M+ PD T S+L AC
Sbjct: 75 ----GDVFPWNVMIGGYVKHGETREALELYHQMQKVSSTNPDNYTYSSVLNACA 124
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
QN Y + + Q ++P+ T A ++S C+++ +LQ G+++HD + S+ + D
Sbjct: 327 QNGYGDQ--TLELFQQMQLRGVKPNSITIASVLSACAAVSALQEGKRIHDLVNRSECKSD 384
Query: 78 VVLQNYILNM 87
+ + N +++M
Sbjct: 385 ICVGNALIDM 394
>gi|302803813|ref|XP_002983659.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
gi|300148496|gb|EFJ15155.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
Length = 917
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 53/137 (38%), Positives = 76/137 (55%), Gaps = 14/137 (10%)
Query: 40 RIRPS-------TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
R+RPS TYA IS C+ + S+ G+ +H +L + DVV+ I+NMYGKCG
Sbjct: 194 RMRPSGVLPNRITYATAISACAHVESMADGKLIHSQVLEDGFESDVVVSCAIVNMYGKCG 253
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR-DRELIPDGL 151
SLEDAR V + MP P+ SWNAI+A EA+ F M+ + PD +
Sbjct: 254 SLEDAREVFERMPH------PNTVSWNAIVAACTQHGCCVEALWYFQRMQLQGGITPDKV 307
Query: 152 TVRSLLCACTSPSNVLY 168
T ++L AC+SP+ + +
Sbjct: 308 TFITILNACSSPATLTF 324
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ CS++ L G+ +H +L + + +V++ ++ MYGKCG +EDAR V D++
Sbjct: 105 TFVTVLDGCSAIGDLSRGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKL 164
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
++V+ SW ++I EA+ LF MR ++P+ +T + + AC
Sbjct: 165 ALQDVV------SWTSMIMTYVQHDRCVEALELFHRMRPSGVLPNRITYATAISAC 214
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F +Q T+ +++ CSS +L G +H+ IL +++ N I
Sbjct: 288 EALWYFQRMQLQGGITPDKVTFITILNACSSPATLTFGELLHECILQCGYDTHLIVGNCI 347
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+ MY CG +++A M +R+ I SWN II+G A +EA+ LF M
Sbjct: 348 MTMYSSCGRIDNAAAFFSTMVERDAI------SWNTIISGHAQAGFCDEAVHLFRRMLAE 401
Query: 145 ELIPDGLTVRSLL 157
+ PD T S++
Sbjct: 402 GITPDKFTFISII 414
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ C+ ++ GR VH + +S+ + D ++QN ++MYGKCG +EDA V +
Sbjct: 4 TFLALLGLCAKKSAIAEGRFVHSRVEASEFRRDDLVQNATIHMYGKCGCVEDAVSVFQSL 63
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ P SWN+++A A +A +F M+ + L PD +T ++L C++
Sbjct: 64 ------DHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDGCSA 115
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ C+SL +L G+ +H H + + N ++NMY KCG LE+A V +
Sbjct: 507 TLVTALNACASLTALSEGKLIHAHAIERGFAASPAVGNALINMYAKCGCLEEADRVFHQC 566
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+ +L SWN I A EA+ LF EM+ L D ++ ++L C+S S
Sbjct: 567 GK-------NLVSWNTIAAAYVQRDKWREALQLFQEMQLEGLKADKVSFVTVLNGCSSAS 619
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 12/146 (8%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ EAL F +Q + ++ +++ CSS GRK+H+ +L + + D ++
Sbjct: 586 WREALQLFQEMQLE-GLKADKVSFVTVLNGCSSASE---GRKIHNILLETGMESDHIVST 641
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+LNMY SL++A + M R D+ SWNA+IAG A + EA+ +F M+
Sbjct: 642 ALLNMYTASKSLDEASRIFSRMEFR------DIVSWNAMIAGKAEHGLSREAIQMFQRMQ 695
Query: 143 DRELIPDGLTVRSLLCAC--TSPSNV 166
+ PD ++ ++L A +SPS++
Sbjct: 696 LEGVAPDKISFVTVLNAFSGSSPSSL 721
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 54 SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESP 113
SS SL+ R V I + D ++ N I++M+G+ G L +AR + + +R
Sbjct: 716 SSPSSLKQARLVEKLISDQGYETDTIVGNAIVSMFGRSGRLAEARRAFERIRER------ 769
Query: 114 DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
D ASWN I+ A +A+ LF M+ PD +T+ S+L AC+
Sbjct: 770 DAASWNVIVTAHAQHGEVEQALKLFRRMQQESSRPDSITLVSVLSACS 817
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
I P + IS +Q + + + ++ S + DV L + ++NM+ + G++ +AR +
Sbjct: 403 ITPDKFT-FISIIDGTARMQEAKILSELMVESGVELDVFLVSALINMHSRYGNVREARSL 461
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
D+M R D+ W +II+ ++++A+ MR L+ + T+ + L AC
Sbjct: 462 FDDMKDR------DIVMWTSIISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNAC 515
Query: 161 TS 162
S
Sbjct: 516 AS 517
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 83/142 (58%), Gaps = 11/142 (7%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
++EA+ F +Q I+P T+ +++CSS LQ G+ +H ++ + DV
Sbjct: 379 FHDEAIDLFRRMQQQG---IKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVY 435
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
LQ+ +++MY KCGS++DAR+V ++M +RNV+ +W A+I G A EA+ F
Sbjct: 436 LQSALVSMYAKCGSMDDARLVFNQMSERNVV------AWTAMITGCAQHGRCREALEYFE 489
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
+M+ + + PD +T S+L ACT
Sbjct: 490 QMKKQGIKPDKVTFTSVLSACT 511
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 49/124 (39%), Positives = 69/124 (55%), Gaps = 6/124 (4%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
R+ + L+ C+ LRSL+ GR+VH IL S QP+ L+N +L+MY KCGSL DAR
Sbjct: 93 RVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARR 152
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V D + RN++ SW A+I + + EA + M+ PD +T SLL A
Sbjct: 153 VFDGIRDRNIV------SWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNA 206
Query: 160 CTSP 163
T+P
Sbjct: 207 FTNP 210
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 80/139 (57%), Gaps = 8/139 (5%)
Query: 28 VAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
VA + L+ + P+ TY ++ C++ +L+ G+KVH +I+ S ++ + N ++
Sbjct: 281 VALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALI 340
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
MY KCG L++AR + ++P R+V+ +W A++ G A +EA+ LF M+ +
Sbjct: 341 TMYCKCGGLKEARKLFGDLPHRDVV------TWTAMVTGYAQLGFHDEAIDLFRRMQQQG 394
Query: 146 LIPDGLTVRSLLCACTSPS 164
+ PD +T S L +C+SP+
Sbjct: 395 IKPDKMTFTSALTSCSSPA 413
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 68/119 (57%), Gaps = 6/119 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L++ ++ LQ+G+KVH I + + + + ++ MY KCG + A+V+ D++
Sbjct: 199 TFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKL 258
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
P++NV+ +W +IAG A + A+ L +M+ E+ P+ +T S+L CT+P
Sbjct: 259 PEKNVV------TWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTP 311
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 39 FRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD-----VVLQNYILNMYGKCGS 93
F+ PS + L+S C ++ G + +++L K PD V L N +Y G
Sbjct: 564 FQPGPSVWGALLSACRIHSDVERGERAAENVL--KLDPDDDGAYVALSN----IYAAAGR 617
Query: 94 LEDARVVSDEMPQRNVIESPDLASW 118
EDA V M +R+V++ P SW
Sbjct: 618 YEDAEKVRQVMEKRDVVKEPG-QSW 641
>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
Length = 677
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 85/151 (56%), Gaps = 9/151 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
LY +AL+ F + N F TY C++ CS +L +G ++H ++ ++ +
Sbjct: 116 GLYQDALLVFKTMANQ-GFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYI 174
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MYGKC L+ AR V DEMP R D+ SWN+++AG A N+A+ L E
Sbjct: 175 GNGLVSMYGKCKWLDAARRVLDEMPGR------DMVSWNSMVAGYAQNGRFNDALKLCRE 228
Query: 141 MRDRELIPDGLTVRSLLCACTSPS--NVLYL 169
M D +L PD T+ SLL A T+ S NVLY+
Sbjct: 229 MEDLKLKPDAGTMGSLLPAVTNTSCDNVLYV 259
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ C L + LGR++H+++ K +P+++L+N +++MY KCG L++AR V D+M R+
Sbjct: 312 VLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRD 371
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
V+ SW ++I+ +A++LF +MRD PD + S+L AC+
Sbjct: 372 VV------SWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACS 418
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 63 RKVHDHILSSKS-QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
+K+H IL ++ P+ L ++ Y CG R + DE+ +NV+ +N +
Sbjct: 55 KKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVV------FFNVM 108
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
I + +A+ +F M ++ PD T +L AC+ N+
Sbjct: 109 IRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNL 153
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 80/141 (56%), Gaps = 7/141 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+N+AL + +Q T + +I C S LQ GRKVH+ I++ + DV++
Sbjct: 99 GFWNKALRLYYQMQR-TGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIV 157
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ +MY KCGSLE+AR V D MP+R+V+ SWNAIIAG + EA++LFSE
Sbjct: 158 GTALASMYTKCGSLENARQVFDRMPKRDVV------SWNAIIAGYSQNGQPYEALALFSE 211
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M+ + P+ T+ S++ C
Sbjct: 212 MQVNGIKPNSSTLVSVMPVCA 232
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 86/149 (57%), Gaps = 16/149 (10%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSS 72
N QP EAL F +Q N I+P ST ++ C+ L +L+ G+++H + + S
Sbjct: 199 NGQPY-----EALALFSEMQVNG---IKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRS 250
Query: 73 KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNAN 132
+ DV++ N ++NMY KCG++ A + + MP R D+ASWNAII G + S +
Sbjct: 251 GIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIR------DVASWNAIIGGYSLNSQHH 304
Query: 133 EAMSLFSEMRDRELIPDGLTVRSLLCACT 161
EA++ F+ M+ R + P+ +T+ S+L AC
Sbjct: 305 EALAFFNRMQVRGIKPNSITMVSVLPACA 333
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 85/141 (60%), Gaps = 11/141 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
++EAL F+ +Q I+P+ T ++ C+ L +L+ G+++H + + S + + V+
Sbjct: 303 HHEALAFFNRMQVRG---IKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVV 359
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N ++NMY KCG++ A + + MP++NV+ +WNAII+G + + +EA++LF E
Sbjct: 360 GNALVNMYAKCGNVNSAYKLFERMPKKNVV------AWNAIISGYSQHGHPHEALALFIE 413
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M+ + + PD + S+L AC
Sbjct: 414 MQAQGIKPDSFAIVSVLPACA 434
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 78/140 (55%), Gaps = 11/140 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+EAL F +Q I+P ++A + + C+ +L+ G+++H + + S + +VV+
Sbjct: 405 HEALALFIEMQAQG---IKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVG 461
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
++++Y KCG++ A+ + + MP+++V+ SW +I + +A++LFS+M
Sbjct: 462 TGLVDIYAKCGNVNTAQKLFERMPEQDVV------SWTTMILAYGIHGHGEDALALFSKM 515
Query: 142 RDRELIPDGLTVRSLLCACT 161
++ D + ++L AC+
Sbjct: 516 QETGTKLDHIAFTAILTACS 535
>gi|328774747|gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygrometrica]
Length = 1073
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 74/131 (56%), Gaps = 12/131 (9%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
+Q N NF YA + C +SL G+KVHDH+ S++ +PD+ L N +++MY KCG
Sbjct: 96 VQANLNF------YARRLQQCVLAKSLAEGKKVHDHMRSAQFKPDIYLNNMLISMYSKCG 149
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
S+EDA V M E D+ SWNA+I+G A EA LF +M+ L P+ T
Sbjct: 150 SIEDANNVFQAM------EDKDVVSWNAMISGYALHGRDQEAADLFYQMQREGLKPNQNT 203
Query: 153 VRSLLCACTSP 163
S+L AC SP
Sbjct: 204 FISILSACQSP 214
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 81/147 (55%), Gaps = 7/147 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
+ L EA F ++ F+ TYA L++ C+ L G+++H I S+ Q D+
Sbjct: 380 EGLMEEAFRLFRAMEQK-GFQPDKFTYASLLAICADRADLDRGKELHSQIASTGWQTDLT 438
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ +++MY KCGS E+AR V ++MP+RNVI SWNA I+ EA F
Sbjct: 439 VATALISMYAKCGSPEEARKVFNQMPERNVI------SWNAFISCCCRHDLGKEAFQAFK 492
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNV 166
+MR ++ PD +T +LL +CTSP ++
Sbjct: 493 QMRRDDVNPDHITFITLLNSCTSPEDL 519
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 75/122 (61%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++S C S +L+ G ++H I + + DV + ++NMY KCGSLE AR V +EM
Sbjct: 203 TFISILSACQSPIALEFGEQIHSRIAKAGYESDVNVSTALINMYCKCGSLELARKVFNEM 262
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+RNV+ SW A+I+G ++ EA++LF ++ + P+ ++ S+L ACT+P+
Sbjct: 263 RERNVV------SWTAMISGYVQHGDSREALALFRKLIRSGIQPNKVSFASILGACTNPN 316
Query: 165 NV 166
++
Sbjct: 317 DL 318
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I+P+ ++A ++ C++ L G K+H +I + + +V++ N +++MY +CGSL +AR
Sbjct: 298 IQPNKVSFASILGACTNPNDLGEGLKLHAYIKQAGLEQEVLVGNALISMYSRCGSLANAR 357
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V D + S + +WNA+IAG EA LF M + PD T SLL
Sbjct: 358 QVFDNL------RSLNRTTWNAMIAGYG-EGLMEEAFRLFRAMEQKGFQPDKFTYASLLA 410
Query: 159 ACTSPSNV 166
C +++
Sbjct: 411 ICADRADL 418
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 6/114 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
STY+ ++ C+ L +++ G+K+H + + + D + N ++ MY +CG L A+ V ++
Sbjct: 706 STYSTALNACARLTAVEHGKKIHAQLKEAGMETDTRVSNSLIEMYSRCGCLCSAKQVFEK 765
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
M R D+ SWNA+IAG N A+ + M ++P+ T S+L
Sbjct: 766 MLSR------DINSWNALIAGYCQNGQGNIALEYYELMLRASIVPNKATFTSIL 813
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ ++L L GR +H + D+ + ++ MY KCGSL DA V
Sbjct: 606 TFINVLRAVANLEDLDAGRMIHGLVEKGGFGKDIRVLTTLIKMYSKCGSLRDAENVF--- 662
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+ ++ D+ WNA++A A +A+ LF +M+ + PD T + L AC +
Sbjct: 663 ---STVQEKDVVCWNAMLAAYAHSDRGQDALKLFQQMQLEGVNPDSSTYSTALNACARLT 719
Query: 165 NV 166
V
Sbjct: 720 AV 721
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+L EA AF ++ + + P T+ L+++C+S L+ GR +H I +
Sbjct: 481 HDLGKEAFQAFKQMRRDD---VNPDHITFITLLNSCTSPEDLERGRYIHGKINQWGMLSN 537
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ N +++MYG+CG+L DAR V + +R DL SWNA+IA A L
Sbjct: 538 NHVANALISMYGRCGNLADAREVFYRIRRR------DLGSWNAMIAANVQHGANGSAFDL 591
Query: 138 FSEMRDRELIPDGLTVRSLLCA 159
F + R D T ++L A
Sbjct: 592 FRKYRSEGGKGDKYTFINVLRA 613
>gi|356570285|ref|XP_003553320.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 474
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 78/149 (52%), Gaps = 16/149 (10%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSS 72
+ QPI+ AFD + +RP+ Y L+ C+ + SL+LGR+VHD L +
Sbjct: 232 HKQPIE--------AFDLFERMQADNVRPNEYTLVSLVRACTEMGSLKLGRRVHDFALKN 283
Query: 73 KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNAN 132
+ + L +++MY KCG+L+DAR V D M R LA+WN +I + +
Sbjct: 284 GFELEPFLGTALIDMYSKCGNLDDARTVFDMMQMRT------LATWNTMITSLGVHGYRD 337
Query: 133 EAMSLFSEMRDRELIPDGLTVRSLLCACT 161
EA+S+F EM +PD +T +L AC
Sbjct: 338 EALSIFEEMEKANEVPDAITFVGVLSACV 366
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 25/143 (17%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY C+I+ C + +L +GR H + D+ +QN ++N+Y KC +++D V D+M
Sbjct: 124 TYPCVINACMAYNALDVGRVAHALAIKMGFWGDLYVQNTMMNLYFKCENVDDGWNVFDKM 183
Query: 105 PQRNV-------------------------IESPDLASWNAIIAGVASPSNANEAMSLFS 139
RNV + S ++ SW AII G EA LF
Sbjct: 184 CVRNVFAWTTVIAGFVACGKLDTARELFEQMPSKNVVSWTAIIDGYVKHKQPIEAFDLFE 243
Query: 140 EMRDRELIPDGLTVRSLLCACTS 162
M+ + P+ T+ SL+ ACT
Sbjct: 244 RMQADNVRPNEYTLVSLVRACTE 266
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 9/114 (7%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+ CS+ + L ++VH I+ D +L ++ + G ++ A +V D++
Sbjct: 30 LLKKCSNFKQL---KQVHGKIIRYGLTYDQLLVRKLIQLSPSYGKMKYATLVFDQL---- 82
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+PD+ +WN +I + A LF M + PD T ++ AC +
Sbjct: 83 --NAPDVFTWNVMIRAYTIGGSPKMAFLLFKAMLYQGFAPDKFTYPCVINACMA 134
>gi|356560406|ref|XP_003548483.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 483
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 76/146 (52%), Gaps = 11/146 (7%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS 74
+ QPI EA F+ +Q N R T L+ C+ + SL+LGR+VHD L +
Sbjct: 233 HKQPI-----EAFNLFERMQQVDNVRPNEYTLVSLVRACTEMGSLKLGRRVHDFALKNGF 287
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+ + L +++MY KCG L+DAR V D M R LA+WN +I + +EA
Sbjct: 288 ELEPFLGTALIDMYSKCGYLDDARTVFDMMQVRT------LATWNTMITSLGVHGYRDEA 341
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCAC 160
+SLF EM +PD +T +L AC
Sbjct: 342 LSLFDEMEKANEVPDAITFVGVLSAC 367
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 26/143 (18%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY +I+ C + +L LG H + D+ +QN ++N+Y KC +++D R V D+M
Sbjct: 125 TYPFVINACMASSALDLGIVAHALAIKMGFWGDLYVQNTMMNLYFKCENVDDGRKVFDKM 184
Query: 105 PQRNV-------------------------IESPDLASWNAIIAGVASPSNANEAMSLFS 139
RNV + S ++ SW A+I G EA +LF
Sbjct: 185 RVRNVFAWTTVISGLVACGKLDTARELFEQMPSKNVVSWTAMIDGYVKHKQPIEAFNLFE 244
Query: 140 EMRDRELI-PDGLTVRSLLCACT 161
M+ + + P+ T+ SL+ ACT
Sbjct: 245 RMQQVDNVRPNEYTLVSLVRACT 267
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+ CS+ + L ++VH I+ D +L ++ + G ++ A +V D++
Sbjct: 31 LLQKCSNFKQL---KQVHGKIIRFGLTYDQLLMRKLIQLSSSYGKMKYATLVFDQL---- 83
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+PD+ +WN +I + A+ LF M + PD T ++ AC + S
Sbjct: 84 --NAPDVFTWNVMIRAFTIGGSPKMALLLFKAMLCQGFAPDKFTYPFVINACMASS 137
>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 785
Score = 95.5 bits (236), Expect = 7e-18, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 86/143 (60%), Gaps = 12/143 (8%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ L+ EA+ FD +Q+ +RP YA ++ C+ SL GR+VH+HI + +
Sbjct: 338 EGLHYEAIGLFDEMQSKG---LRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSN 394
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ + N ++NMY KCGS+E+A ++ ++P +N++ SWN +I G + S NEA+ L
Sbjct: 395 LPVSNALMNMYAKCGSMEEANLIFSQLPVKNIV------SWNTMIGGYSQNSLPNEALQL 448
Query: 138 FSEMRDRELIPDGLTVRSLLCAC 160
F +M+ ++L PD +T+ +L AC
Sbjct: 449 FLDMQ-KQLKPDDVTMACVLPAC 470
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 12/143 (8%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+L NEAL F +Q +++P T AC++ C+ L +L+ GR++H HIL D+
Sbjct: 440 SLPNEALQLFLDMQK----QLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDL 495
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ +++MY KCG L A+ + D +P++ D+ W +IAG EA+S F
Sbjct: 496 HVACALVDMYVKCGLLVLAQQLFDMIPKK------DMILWTVMIAGYGMHGFGKEAISTF 549
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
+MR + P+ + S+L ACT
Sbjct: 550 EKMRVAGIEPEESSFTSILYACT 572
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 36 NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
N + +T ++ C+++ +L LGR +H + + + V+ N +L+MY KCG+L
Sbjct: 252 NLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLN 311
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
A V +M + ++ SW +IIA EA+ LF EM+ + L PD V S
Sbjct: 312 GANEVFVKMGETTIV------SWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTS 365
Query: 156 LL--CACTS 162
++ CAC++
Sbjct: 366 VVHACACSN 374
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 72/144 (50%), Gaps = 7/144 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y E++ F+ +Q R T+ C++ ++ ++ ++VH ++L + N
Sbjct: 139 YRESVGLFEKMQE-LGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVN 197
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++ Y KCG +E AR++ DE+ R+V+ SWN++I+G + + F +M
Sbjct: 198 SLIAAYFKCGEVESARILFDELSDRDVV------SWNSMISGCTMNGFSRNGLEFFIQML 251
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
+ + D T+ ++L AC + N+
Sbjct: 252 NLGVDVDSATLVNVLVACANVGNL 275
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 29 AFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY 88
A L + + +TY ++ C+ L+SL+ G++VH I S+ D VL ++ MY
Sbjct: 43 AMKLLSRSQRSELELNTYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMY 102
Query: 89 GKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP 148
CG L R + D I + + WN +++ A N E++ LF +M++ +
Sbjct: 103 VNCGDLVKGRRIFDG------ILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRG 156
Query: 149 DGLTVRSLL 157
D T +L
Sbjct: 157 DSYTFTCVL 165
>gi|302817750|ref|XP_002990550.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
gi|300141718|gb|EFJ08427.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
Length = 917
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 75/137 (54%), Gaps = 14/137 (10%)
Query: 40 RIRPS-------TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
R+RPS TYA IS C+ + S+ G+ +H +L + DVV+ I+NMYGKCG
Sbjct: 194 RMRPSGVLPNRITYATAISACAHVESMADGKLIHSQVLEDGFESDVVVSCAIVNMYGKCG 253
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR-DRELIPDGL 151
SLEDAR V + MP P+ SWNAI+A EA+ F M+ PD +
Sbjct: 254 SLEDAREVFERMPH------PNTVSWNAIVAACTQHGCCVEALWYFQRMQLQGGSTPDKV 307
Query: 152 TVRSLLCACTSPSNVLY 168
T ++L AC+SP+ + +
Sbjct: 308 TFITILNACSSPATLTF 324
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C++ L G+ +H +L + + +V++ ++ MYGKCG +EDAR V D++
Sbjct: 105 TFVTVLDGCTATGDLSRGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKL 164
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++V+ SW ++I EA+ LF MR ++P+ +T + + AC
Sbjct: 165 ALQDVV------SWTSMIMTYVQHDRCVEALELFHRMRPSGVLPNRITYATAISACA 215
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T+ L+ C+ ++ GR VH + +S+ + D ++QN ++MYGKCG +EDA V
Sbjct: 3 GTFLALLGLCAKKSAIAEGRFVHSRVEASEFRRDDLVQNATIHMYGKCGCVEDAVTVFQS 62
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
+ + P SWN+++A A +A +F M+ + L PD +T ++L CT+
Sbjct: 63 L------DHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDGCTAT 116
Query: 164 SNV 166
++
Sbjct: 117 GDL 119
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ C+SL +L G+ +H H + + N ++NMY KCG LE+A +V +
Sbjct: 507 TLVTALNACASLTALSEGKLIHSHAIERGFAASPAVGNALINMYAKCGCLEEADLVFHQC 566
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+ +L SWN I A EA+ LF EM+ L D ++ ++L C+S S
Sbjct: 567 GK-------NLVSWNTIAAAYVQRDKWREALQLFQEMQLEGLKADKVSFVTVLNGCSSAS 619
Query: 165 N 165
Sbjct: 620 E 620
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F +Q T+ +++ CSS +L G +++ IL +++ N I
Sbjct: 288 EALWYFQRMQLQGGSTPDKVTFITILNACSSPATLTFGELLYECILQCGYDTHLIVGNCI 347
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+ MY CG +++A M +R+ I SWN II+G A +EA+ LF M
Sbjct: 348 MTMYSSCGRIDNAAAFFSTMVERDAI------SWNTIISGHAQAGFCDEAVHLFRRMLAE 401
Query: 145 ELIPDGLTVRSLL 157
+ PD T S++
Sbjct: 402 GITPDKFTFISII 414
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 12/149 (8%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
++ + EAL F +Q + ++ +++ CSS G K+H+ +L + + D +
Sbjct: 583 RDKWREALQLFQEMQLE-GLKADKVSFVTVLNGCSSASE---GSKIHNILLETGMESDHI 638
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ +LNMY SL++A + M R D+ SWNA+IAG A + EA+ +F
Sbjct: 639 VSTALLNMYTASKSLDEASRIFSRMEFR------DIVSWNAMIAGKAEHGLSREAIQMFQ 692
Query: 140 EMRDRELIPDGLTVRSLLCA--CTSPSNV 166
M+ + PD ++ ++L A +SPS++
Sbjct: 693 RMQLEGVAPDKISFVTVLNAFSGSSPSSL 721
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 54 SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESP 113
SS SL+ R V I + D ++ N I++M+G+ G L +AR + + +R
Sbjct: 716 SSPSSLKQARLVEKLISDQGYETDTIVGNAIVSMFGRSGRLAEARRAFERIRER------ 769
Query: 114 DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
D ASWN I+ A +A+ LF M+ PD +T+ S+L AC+
Sbjct: 770 DAASWNVIVTAHAQHGEVEQALKLFRRMQQESSRPDSITLVSVLSACS 817
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
I P + IS +Q + + + ++ S + DV L + ++NM+ + G++ +AR +
Sbjct: 403 ITPDKFT-FISIIDGTARMQEAKILSELMVESGVELDVFLVSALINMHSRYGNVREARSL 461
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
D+M R D+ W +II+ ++++A+ MR L+ + T+ + L AC
Sbjct: 462 FDDMKDR------DIVMWTSIISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNAC 515
Query: 161 TS 162
S
Sbjct: 516 AS 517
>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 599
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 20/175 (11%)
Query: 6 KTQLRFTFYNSQPIQNLYNEALVAFDFLQN--------------NTNFRIRPSTYACLIS 51
K +L ++ P++NL + +++N + FR PS+ + ++
Sbjct: 176 KIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLL 235
Query: 52 TCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIE 111
CS+L +L+LG++VH I S ++ +L+MY KCG LEDA + MPQ++V+
Sbjct: 236 GCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVV- 294
Query: 112 SPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+WNA+I+G A +A+ LF +MRD + PD +T ++L AC V
Sbjct: 295 -----TWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFV 344
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
VV ++ + K G +E A +EMP +N L +WNA+IAG A + L
Sbjct: 161 VVAWTAMITGFMKFGKIELAEKYFEEMPMKN------LVTWNAMIAGYIENCQAENGLKL 214
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPS 164
F M + P+ ++ S+L C++ S
Sbjct: 215 FKRMVESGFRPNPSSLSSVLLGCSNLS 241
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 16/119 (13%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRS-LQLGRKVHDHILSSKSQPDVVLQN 82
N AL F+ + T T+ +++ S+ R +++ R++ D I +PD+ N
Sbjct: 22 NSALRVFESMTVKTTV-----TWNSMLAGYSNRRGKIKVARQLFDRI----PEPDIFSYN 72
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+L Y +E AR+ D+MP + D ASWN +I+G + ++A LF M
Sbjct: 73 IMLACYLHNADVESARLFFDQMPVK------DTASWNTMISGFSQNGMMDQARELFLVM 125
>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 8/122 (6%)
Query: 41 IRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I+P ++ C L++ C+SL + + G++VH HIL D+ N ++NMY KCGS+EDA
Sbjct: 410 IKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDAS 469
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+P R ++ SW+A+I G+A EA+ LF +M + P+ +T+ S+LC
Sbjct: 470 CAFSRIPVRGIV------SWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLC 523
Query: 159 AC 160
AC
Sbjct: 524 AC 525
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 41 IRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
IRP+ ++ +I+ C+ L GRK+H +++ D N +++MY K G LEDA
Sbjct: 107 IRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDAS 166
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V DE I PD+ SWNAIIAG + A+ L EM + P+ T+ S L
Sbjct: 167 SVFDE------IAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALK 220
Query: 159 AC 160
AC
Sbjct: 221 AC 222
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 6/145 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
QN +E + L + +T + ++ + ++L++ + R++H L S + D
Sbjct: 290 QNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNY 349
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ N +++ YGKCG +EDA V +E P DL + +++ A EA+ L+
Sbjct: 350 VVNSLIDTYGKCGHVEDATRVFEESP------IVDLVLFTSLVTAYAQDGQGEEALRLYL 403
Query: 140 EMRDRELIPDGLTVRSLLCACTSPS 164
EM+DR + PD SLL AC S S
Sbjct: 404 EMQDRGIKPDSFVCSSLLNACASLS 428
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+ ++ C+ + L LG++VH ++ + D + N ++ +Y KCG DAR + D +P
Sbjct: 13 FPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIP 72
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R+V+ SWNA+ + EA+SLF +M + P+ ++ S++ CT
Sbjct: 73 DRSVV------SWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCT 122
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + + C+ + +LGR++H ++ D L +++MY KC S++DAR+V M
Sbjct: 214 TLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLM 273
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
P+R D+ +WNA+I+G + EA SLF M
Sbjct: 274 PER------DMIAWNAVISGHSQNEEDEEAASLFPLM 304
>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1125
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 81/142 (57%), Gaps = 7/142 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
+ L+ + L F +Q +TYA ++ C+SL SL LG+++H HI+ S +V
Sbjct: 479 KGLHEDGLKLFVEMQR-AKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVF 537
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ +++MY KCGS++DA + EMP RN + SWNA+I+ A + + + LF
Sbjct: 538 SGSALVDMYAKCGSIKDALQMFQEMPVRNSV------SWNALISAYAQNGDGDCTLRLFE 591
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
EM L PD +++ S+LCAC+
Sbjct: 592 EMVRSGLQPDSVSLLSILCACS 613
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
E+L F LQ T F R +A L+S + +L +GR++H + + + ++++ N
Sbjct: 382 KESLELFKELQF-TGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNS 440
Query: 84 ILNMYGKCGSLEDA-RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG +A R+ SD Q +V W A+I+ + + LF EM+
Sbjct: 441 LVDMYAKCGEFGEANRIFSDLAIQSSV-------PWTAMISSYVQKGLHEDGLKLFVEMQ 493
Query: 143 DRELIPDGLTVRSLLCACTS 162
++ D T S++ AC S
Sbjct: 494 RAKIGADAATYASIVRACAS 513
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 12/126 (9%)
Query: 43 PSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
P+TY L+ + L RK+ D + ++ N ++ Y K G+L +AR +
Sbjct: 99 PNTYRSNFLVKSFLQRGDLNGARKLFDEM----PHKNIFSTNTMIMGYIKSGNLSEARTL 154
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
D M QR + +W +I G A + EA LF EM + PD +++ +LL
Sbjct: 155 FDSMFQRTAV------TWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGF 208
Query: 161 TSPSNV 166
T +V
Sbjct: 209 TEFDSV 214
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
A L+S + S+ R+VH H++ +V+ N +L+ Y K SL A + +++P+
Sbjct: 202 ATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPE 261
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
R D ++NA++ G + EA++LF +M++ P T ++L A
Sbjct: 262 R------DSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTA 308
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+N + F +R T+A +++ L ++ G++VH ++ +V + N
Sbjct: 279 FNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVAN 338
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+L+ Y K + +A + EMP+ + I S+N ++ A E++ LF E++
Sbjct: 339 ALLDFYSKHDRVVEASKLFYEMPEVDGI------SYNVLVTCYAWNGRVKESLELFKELQ 392
Query: 143 ----DRELIP 148
DR P
Sbjct: 393 FTGFDRRNFP 402
>gi|383173444|gb|AFG70126.1| Pinus taeda anonymous locus 0_11486_01 genomic sequence
Length = 142
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 73/116 (62%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +I C+ L +LQ G+ +HDHI+ + Q DV + N ++ +Y +CGS++ AR V D+M
Sbjct: 6 TFPFVIKACAGLSALQEGKAIHDHIVRTGFQWDVFVANSLVTLYSQCGSVDVARHVFDKM 65
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P+R DL SWNA+I G A ++A+ LF +M+ + PD +T+ ++L AC
Sbjct: 66 PER------DLVSWNAMIDGYAQNDYGDQALMLFRQMQMAGVKPDPVTIVNVLSAC 115
>gi|361066941|gb|AEW07782.1| Pinus taeda anonymous locus 0_11486_01 genomic sequence
Length = 142
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 73/116 (62%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +I C+ L +LQ G+ +HDHI+ + Q DV + N ++ +Y +CGS++ AR V D+M
Sbjct: 6 TFPFVIKACAGLSALQEGKAIHDHIVRTGFQWDVFVANSLVTLYSQCGSVDVARHVFDKM 65
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P+R DL SWNA+I G A ++A+ LF +M+ + PD +T+ ++L AC
Sbjct: 66 PER------DLVSWNAMIDGYAQNDYGDQALMLFRQMQIAGVKPDPVTIVNVLSAC 115
>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 6/119 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y L+ +C + L +G++VH+HIL +P+V + N +L +Y CGS+ +AR + D+
Sbjct: 31 YVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFS 90
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
++V+ SWN +I+G A A EA +LF+ M+ L PD T S+L AC+SP+
Sbjct: 91 NKSVV------SWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPA 143
Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 8/129 (6%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
R+RPS TY ++S C SL +L+ G+++H HI+ S+ DV + + MY KCG+ +DA
Sbjct: 225 RVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDA 284
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R V + + R+VI +WN +I G EA F M + + PD T ++L
Sbjct: 285 REVFECLSYRDVI------AWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVL 338
Query: 158 CACTSPSNV 166
AC P +
Sbjct: 339 SACARPGGL 347
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 65/116 (56%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY C++ CS+ +L+ G+++H ++ + D+ + N +++MY KCGS+EDA V + M
Sbjct: 434 TYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGM 493
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
R+V+ +WN +I G+ EA+ + M+ + P+ T ++L AC
Sbjct: 494 SMRDVV------TWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSAC 543
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 11/145 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ L EA F +Q R+ P T+ ++S CSS L GR++H ++ + D
Sbjct: 107 RGLAQEAFNLFTLMQQE---RLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLAND 163
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ N +++MY KCGS+ DAR V D M R D SW + A E++
Sbjct: 164 TTVGNALISMYAKCGSVRDARRVFDAMASR------DEVSWTTLTGAYAESGYGEESLKT 217
Query: 138 FSEMRDRELIPDGLTVRSLLCACTS 162
+ M + P +T ++L AC S
Sbjct: 218 YHAMLQERVRPSRITYMNVLSACGS 242
Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 6/120 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+TY ++S C+ L G+++H DV N ++NMY K GS++DAR V D
Sbjct: 332 ATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDR 391
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
MP+R+V+ SW ++ A E+ + F +M + + + +T +L AC++P
Sbjct: 392 MPKRDVV------SWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNP 445
>gi|383173440|gb|AFG70124.1| Pinus taeda anonymous locus 0_11486_01 genomic sequence
gi|383173442|gb|AFG70125.1| Pinus taeda anonymous locus 0_11486_01 genomic sequence
gi|383173446|gb|AFG70127.1| Pinus taeda anonymous locus 0_11486_01 genomic sequence
Length = 142
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 75/122 (61%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +I C+ L +LQ G+ +HDHI+ + Q DV + N ++ +Y +CGS++ AR V D+M
Sbjct: 6 TFPFVIKACAGLSALQEGKAIHDHIVRTGFQWDVFVANSLVTLYSQCGSVDVARHVFDKM 65
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P+R DL SWNA+I G A ++A+ LF +M+ + PD +T+ ++L AC +
Sbjct: 66 PER------DLVSWNAMIDGYAQNDCGDQALMLFHQMQMAGVKPDPVTIVNVLSACIKVA 119
Query: 165 NV 166
+
Sbjct: 120 GL 121
>gi|383152423|gb|AFG58307.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
Length = 151
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 73/123 (59%), Gaps = 6/123 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
T+ ++ T+A ++ C+SL +L G+ +H+ I+ S Q V ++N +L+MY KCGSLED
Sbjct: 1 TDAKLDSHTFASILPACASLAALDQGKGIHEDIIRSGLQSYVTVENSLLDMYAKCGSLED 60
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
AR V + M R+V+ SWNA+I G A EA+ LF +M+ + PD +T +
Sbjct: 61 ARKVFNRMTTRDVV------SWNAMIVGYAIHGCGKEALQLFEQMKHTDTGPDHVTFIGV 114
Query: 157 LCA 159
L A
Sbjct: 115 LSA 117
>gi|383173448|gb|AFG70128.1| Pinus taeda anonymous locus 0_11486_01 genomic sequence
Length = 142
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 75/122 (61%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +I C+ L +LQ G+ +HDHI+ + Q DV + N ++ +Y +CGS++ AR V D+M
Sbjct: 6 TFPFVIKACAGLSALQEGKAIHDHIVRTGFQWDVFVANSLVTLYSQCGSVDVARHVFDKM 65
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P+R DL SWNA+I G A ++A+ LF +M+ + PD +T+ ++L AC +
Sbjct: 66 PER------DLVSWNAMIDGYAQNDCGDQALMLFHQMQMAVVKPDPVTIVNVLSACIKVA 119
Query: 165 NV 166
+
Sbjct: 120 GL 121
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 82/146 (56%), Gaps = 11/146 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y EAL F+ ++N+ R+ P +T +++ CS L L +G+K+H++ILS+K V L
Sbjct: 374 YREALDLFNKMRNS---RVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTL 430
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MY KCG + A + EMP +N L SWN II +A EA+ LF E
Sbjct: 431 YNSLIDMYAKCGPVVTALDIFLEMPGKN------LVSWNVIIGALALHGCGLEAIKLFEE 484
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M+ +PD +T+ LL AC+ V
Sbjct: 485 MQADGTLPDEITLTGLLSACSHSGLV 510
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 13/119 (10%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
+ + C +L S Q I + +VV +++ Y + GS+E AR + D+MP +N
Sbjct: 305 MYAKCGNLHSAQ-------AIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKN 357
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
V+ SWN++I+ EA+ LF++MR+ ++PD T+ S+L AC+ +++
Sbjct: 358 VV------SWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLV 410
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 83/149 (55%), Gaps = 11/149 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ Y EAL F+ ++N+ R+ P +T +++ CS L L +G+K+H++ILS+K
Sbjct: 299 EGQYREALDLFNKMRNS---RVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYG 355
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V L N +++MY KCG + A + EMP +N L SWN II +A EA+ L
Sbjct: 356 VTLYNSLIDMYAKCGPVVTALDIFLEMPGKN------LVSWNVIIGALALHGCGLEAIKL 409
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNV 166
F EM+ +PD +T+ LL AC+ V
Sbjct: 410 FEEMQADGTLPDEITLTGLLSACSHSGLV 438
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 27/166 (16%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AF + + + P T+ L+S CS R L LGR VH I + + D++++N +++
Sbjct: 173 AFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVD 232
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIE-------------------------SPDLASWNAI 121
MY KCG+L A+ + D ++NV+ ++ SWN++
Sbjct: 233 MYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSM 292
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
I+ EA+ LF++MR+ ++PD T+ S+L AC+ +++
Sbjct: 293 ISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLV 338
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V +QN ++ +Y CG + AR + D++ + L SWN++I G A N EA L
Sbjct: 123 VFVQNALIAVYVVCGLIHCARKLFDDITDKT------LVSWNSMIGGYAHMGNWKEAFLL 176
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNV 166
F +MR+ + PDG T +LL C+ ++
Sbjct: 177 FRKMREWGMEPDGFTFVNLLSVCSQSRDL 205
>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 82/146 (56%), Gaps = 11/146 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y EAL F+ ++N+ R+ P +T +++ CS L L +G+K+H++ILS+K V L
Sbjct: 235 YREALDLFNKMRNS---RVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTL 291
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MY KCG + A + EMP +N L SWN II +A EA+ LF E
Sbjct: 292 YNSLIDMYAKCGPVVTALDIFLEMPGKN------LVSWNVIIGALALHGCGLEAIKLFEE 345
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M+ +PD +T+ LL AC+ V
Sbjct: 346 MQADGTLPDEITLTGLLSACSHSGLV 371
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 68/134 (50%), Gaps = 26/134 (19%)
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIE------- 111
+ RK+ D I + K+ D++++N +++MY KCG+L A+ + D ++NV+
Sbjct: 139 IHCARKLFDDI-TDKTLIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISA 197
Query: 112 ------------------SPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTV 153
++ SWN++I+ EA+ LF++MR+ ++PD T+
Sbjct: 198 YAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATL 257
Query: 154 RSLLCACTSPSNVL 167
S+L AC+ +++
Sbjct: 258 VSILAACSQLGDLV 271
>gi|168008904|ref|XP_001757146.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691644|gb|EDQ78005.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 527
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 10/125 (8%)
Query: 42 RPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP+ TY ++ C+ L+ G+++H HI + DV +Q ++NMY K GS++DAR+
Sbjct: 97 RPNEVTYLSILKACACPVGLKWGKEIHAHISHGGFRSDVPVQTALVNMYAKSGSIKDARL 156
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL-- 157
V DEM +RNVI +WN +I G+A EA SLF +M++ +PD T S+L
Sbjct: 157 VFDEMAERNVI------TWNVMIGGLAQHGFGQEAFSLFLQMQEEGFVPDSTTYLSILTA 210
Query: 158 CACTS 162
AC+S
Sbjct: 211 TACSS 215
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 43/119 (36%), Positives = 69/119 (57%), Gaps = 6/119 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+TY +++ +S +L+ ++VH+H + D + N +++MY K GS++DAR+V D+
Sbjct: 305 TTYVSILTASASAGALEWVKQVHNHARKAGLGSDFRVCNALVHMYAKSGSIDDARLVFDQ 364
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
M RNV +WNA+I G+A EA SLF MR ++PD +T S+L A S
Sbjct: 365 MSVRNVF------TWNAMIGGLAQHGCGQEAFSLFLRMRREGVVPDAITYMSILNASAS 417
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY +++ +S +L ++VH + + DV + N +++MY K GS+ DAR++ D M
Sbjct: 407 TYMSILNASASTGALGWVKEVHRQAVQAGLDSDVRVGNALVHMYCKTGSISDARLMFDGM 466
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+R+VI +W A+I+G+A EA SLF +M+ IP T S+L CTS
Sbjct: 467 VERDVI------TWTAMISGLAQNECGQEAFSLFLQMQREGFIPVATTYASILNVCTS 518
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 75/134 (55%), Gaps = 9/134 (6%)
Query: 32 FLQ-NNTNFRIRPSTYACLIST--CSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY 88
FLQ F +TY +++ CSS +L ++VH H + + D+ + N ++++Y
Sbjct: 189 FLQMQEEGFVPDSTTYLSILTATACSSAGALGWVKEVHRHAVKAGFDSDMRVCNALVHVY 248
Query: 89 GKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP 148
K GS++DAR+V + M R+VI SW+A+I G+A +EA SLF +M+ +IP
Sbjct: 249 SKSGSVDDARLVFEGMLDRDVI------SWSAMIGGLAQNGCGHEAFSLFLKMQREGVIP 302
Query: 149 DGLTVRSLLCACTS 162
+ T S+L A S
Sbjct: 303 NVTTYVSILTASAS 316
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y ++ C + L ++VHD IL S + + N ++ +Y +CG ++DAR V D++
Sbjct: 2 YVDVLQRCFKHKDLTSVKQVHDCILKSGMDQNPYVANKLMRVYIRCGKVQDARHVFDKLV 61
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
++NV +W +I G A +A+ ++++MR P+ +T S+L AC P
Sbjct: 62 KKNVF------NWTTMIGGYAEHGRPADAIEVYNQMRQEGGRPNEVTYLSILKACACP 113
>gi|302812609|ref|XP_002987991.1| hypothetical protein SELMODRAFT_45004 [Selaginella moellendorffii]
gi|300144097|gb|EFJ10783.1| hypothetical protein SELMODRAFT_45004 [Selaginella moellendorffii]
Length = 344
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 80/143 (55%), Gaps = 10/143 (6%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKS----QPD 77
E A + ++ ++ P T+ +I C +L + GR+VH+ I S + Q +
Sbjct: 104 GENSTALELFESMIQQQLHPESRTFVAVIKACGNLADFERGRRVHEQIRSRRGYMDQQSE 163
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+V+ N ++ +YGKCG +E+AR V D +P ++ DL +W+AII+G + +A + L
Sbjct: 164 LVVANSLITLYGKCGCMEEARAVFDAIP----VKRRDLVAWSAIISGYSQQGDACQVFDL 219
Query: 138 FSEMRDRELIPDGLTVRSLLCAC 160
F M+ ++ PDG+T S+L AC
Sbjct: 220 FERMQHEKIRPDGVTFLSVLSAC 242
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 27/90 (30%)
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIE---------------------------SPDLA 116
+++MY KCG + +AR V D + +R+V+ D+
Sbjct: 3 LVDMYSKCGCMAEARQVFDSIHRRDVVSWNAIITGYAHGGAAGMLEARAVFEQTSHHDVV 62
Query: 117 SWNAIIAGVASPSNANEAMSLFSEMRDREL 146
WN+II G A + +A+ +FS M DR +
Sbjct: 63 LWNSIIHGYAQSGDGEQALEMFSRMLDRAM 92
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 10/126 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+A FD + + +IRP T+ ++S C+ + RK + H L + +Q
Sbjct: 211 GDACQVFDLFERMQHEKIRPDGVTFLSVLSACNHTGLVDQARK-YFHALLEDYREYATIQ 269
Query: 82 NY--ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+Y ++++ G+ LE+A V MP PD W +I+A N + F
Sbjct: 270 HYSCMVDLLGRANHLEEALAVVKSMPM-----EPDSTIWTSILASSRKWENVEAGRAAFE 324
Query: 140 EMRDRE 145
+++++
Sbjct: 325 RIQEKD 330
>gi|449441061|ref|XP_004138302.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
gi|449477575|ref|XP_004155061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 506
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 86/150 (57%), Gaps = 14/150 (9%)
Query: 21 NLYNEALVAF-DFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+YNEAL F LQ+ + P +T IS CS+L +L GR VH H+ S+
Sbjct: 235 GMYNEALDLFVQMLQSG----VEPDEATLVVTISACSALGALDCGRWVHSHVNSNDRGKT 290
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ + N +++MY KCG++E AR + + + +N++ +WN +I G+A+ +A +A++L
Sbjct: 291 IAVFNSLIDMYAKCGAVEYAREMFNAVSGKNIV------TWNTMIMGLATHGDAEDALTL 344
Query: 138 FSEM-RDRELIPDGLTVRSLLCACTSPSNV 166
FS M +R PDG+T ++LCAC V
Sbjct: 345 FSNMLAERVETPDGVTFLAVLCACNYGGKV 374
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 8/138 (5%)
Query: 27 LVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
L+AF+F + I T++ L+ L S+ LG+++H +IL V ++N +
Sbjct: 137 LMAFEFYKRMLEKGIAADNFTFSFLLKMTGQLGSIMLGKQLHVNILKLGLDSHVYVRNTL 196
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MYG+ + AR + DE+P+ DL +WNA+I S NEA+ LF +M
Sbjct: 197 IHMYGRLKDVNIARNLFDELPK------TDLVAWNAVIDCHVSCGMYNEALDLFVQMLQS 250
Query: 145 ELIPDGLTVRSLLCACTS 162
+ PD T+ + AC++
Sbjct: 251 GVEPDEATLVVTISACSA 268
>gi|147835805|emb|CAN64107.1| hypothetical protein VITISV_013147 [Vitis vinifera]
Length = 497
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 7/128 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+ ++S+C +SL++GR+VHD + SK DV L N ++ MYG+CGS+ DAR V D
Sbjct: 134 GVFCAMLSSCGKTKSLEVGRRVHDLLARSKFGGDVELNNKLIEMYGRCGSMRDARRVFDR 193
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS- 162
M +RN ++SW+ +I G A+ + + LF MR L P G T ++L AC S
Sbjct: 194 MRERN------MSSWHLMINGYAANGQGRDGLLLFERMRKVGLRPVGETFVAVLSACGSV 247
Query: 163 PSNVLYLD 170
++Y +
Sbjct: 248 EEGLMYFE 255
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 80/142 (56%), Gaps = 8/142 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L EAL F LQ R TYA +++ S L +L GR+VH H+L +K VVL
Sbjct: 191 GLDEEALDLFRRLQRE-GMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVL 249
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
QN +++MY KCGSL +R + D MP+R VI SWNA++ G + EA+ LF
Sbjct: 250 QNSLIDMYSKCGSLTYSRRIFDSMPERTVI------SWNAMLVGYSKHGLGREAVELFKL 303
Query: 141 MRDR-ELIPDGLTVRSLLCACT 161
M++ ++ PD +T ++L C+
Sbjct: 304 MKEENKVKPDSVTFLAVLSGCS 325
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 6/120 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y +++ C S +++ G++VH H++ + +P V L+ ++ +Y KC L DAR V DEMP
Sbjct: 13 YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 72
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165
+RNV+ SW A+I+G + A+EA+ LF EM P+ T ++L +CTS S
Sbjct: 73 ERNVV------SWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSG 126
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 67/118 (56%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A ++++C+S QLGR++H ++ + + + + + +L+MY K G + +AR V D +
Sbjct: 113 TFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGL 172
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P+R+V+ S AII+G A EA+ LF ++ + + +T S+L A +
Sbjct: 173 PERDVV------SCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSG 224
>gi|225444971|ref|XP_002279824.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15690-like [Vitis vinifera]
Length = 476
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 7/128 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+ ++S+C +SL++GR+VHD + SK DV L N ++ MYG+CGS+ DAR V D
Sbjct: 132 GVFCAMLSSCGKTKSLEVGRRVHDLLARSKFGGDVELNNKLIEMYGRCGSMRDARRVFDR 191
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS- 162
M +RN ++SW+ +I G A+ + + LF MR L P G T ++L AC S
Sbjct: 192 MRERN------MSSWHLMINGYAANGQGRDGLLLFERMRKVGLRPVGETFVAVLSACGSV 245
Query: 163 PSNVLYLD 170
++Y +
Sbjct: 246 EEGLMYFE 253
>gi|218198170|gb|EEC80597.1| hypothetical protein OsI_22944 [Oryza sativa Indica Group]
Length = 563
Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 45/121 (37%), Positives = 75/121 (61%), Gaps = 8/121 (6%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
++P T ++ C+ L +L++GR+VH H+L K D++L N +L+MY KCGSL+DA +
Sbjct: 225 VQPGTLTSVLRACTGLVTLEVGRQVHAHVL--KYDKDLILHNALLDMYCKCGSLQDADAL 282
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
MPQR+VI SW+ +I+G+A + EA+ +F M+ P+ +T+ +L AC
Sbjct: 283 FGRMPQRDVI------SWSTMISGLAQNGRSIEALKVFDMMKSEGPRPNHITMVGVLFAC 336
Query: 161 T 161
+
Sbjct: 337 S 337
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 12/127 (9%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHI-----LSSKSQPDVVLQNYILNMYGKCGSLEDA 97
P + LI C + GR +H H+ +++ S + + N ++++Y K G L+DA
Sbjct: 67 PVAVSRLIKLCVRHGTPSDGRLIHRHVFGGGDVAAPSCSSLFVSNSLVSLYAKFGLLDDA 126
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE-AMSLFSEMRDRELIPDGLTVRSL 156
+ D MP +NV+ SW ++A +A+ E A+ LF M + P+ T S+
Sbjct: 127 LRLFDGMPHKNVV------SWTTVVAALANARGRKEDALRLFVAMLRDGVAPNMYTFSSI 180
Query: 157 LCACTSP 163
L AC++P
Sbjct: 181 LGACSTP 187
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 79/142 (55%), Gaps = 8/142 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L EAL F LQ R TYA +++ S L +L GR+VH H+L +K VVL
Sbjct: 658 GLDEEALDLFRRLQRE-GMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVL 716
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
QN +++MY KCGSL +R + D MP+R VI SWNA++ G + EA+ LF
Sbjct: 717 QNSLIDMYSKCGSLTYSRRIFDSMPERTVI------SWNAMLVGYSKHGLGREAVELFKL 770
Query: 141 MRDRELI-PDGLTVRSLLCACT 161
M++ + PD +T ++L C+
Sbjct: 771 MKEENKVKPDSVTFLAVLSGCS 792
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 6/120 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y +++ C S +++ G++VH H++ + +P V L+ ++ +Y KC L DAR V DEMP
Sbjct: 480 YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 539
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165
+RNV+ SW A+I+G + A+EA+ LF EM P+ T ++L +CTS S
Sbjct: 540 ERNVV------SWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSG 593
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 67/118 (56%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A ++++C+S QLGR++H ++ + + + + + +L+MY K G + +AR V D +
Sbjct: 580 TFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGL 639
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P+R+V+ S AII+G A EA+ LF ++ + + +T S+L A +
Sbjct: 640 PERDVV------SCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSG 691
>gi|302790562|ref|XP_002977048.1| hypothetical protein SELMODRAFT_106624 [Selaginella moellendorffii]
gi|300155024|gb|EFJ21657.1| hypothetical protein SELMODRAFT_106624 [Selaginella moellendorffii]
Length = 883
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 76/130 (58%), Gaps = 7/130 (5%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
LQ + F++R TYA L+ C + +L GR++H HI++S D L +++L MYGKCG
Sbjct: 36 LQFQSPFQVR-QTYAALLKHCGNAAALPQGRRIHAHIVASGLASDGFLGDHLLQMYGKCG 94
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
S++DA V +P+R+ L SWN IIA A + +A+ +F M + PD T
Sbjct: 95 SVDDAIQVFHALPRRS------LFSWNFIIAAFAKNRHGRKAIEMFRSMDSAGIKPDSAT 148
Query: 153 VRSLLCACTS 162
+ S+L AC+S
Sbjct: 149 LSSVLGACSS 158
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 20/163 (12%)
Query: 14 YNSQPIQNLYNEALVAFDFLQNNTN------FR------IRP--STYACLISTCSSLRSL 59
+++ P ++L++ + F +N FR I+P +T + ++ CSSLR L
Sbjct: 103 FHALPRRSLFSWNFIIAAFAKNRHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRDL 162
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
+ GR++H I S + Q +V++ ++ MY +CG L +AR V D IE+ D+ WN
Sbjct: 163 EEGRRIHGRISSGEFQSGIVVETGLVKMYARCGRLREAREVFDR------IENKDVICWN 216
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
++IA A ++ +A L EM + T +L AC+S
Sbjct: 217 SMIAAYAQGGHSAQARQLCEEMEGFGVKASDTTFAGILGACSS 259
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 70/131 (53%), Gaps = 11/131 (8%)
Query: 38 NFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
F ++ S T+A ++ CSSL G+K+H L+ +++QN +++MYGKC L+
Sbjct: 240 GFGVKASDTTFAGILGACSSLEE---GKKIHSRALARGLSSSIIVQNALISMYGKCNELD 296
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
AR V + + + D+ SW A+I EA+ L+ +M + PD +T S
Sbjct: 297 AARRVFSK------VRAHDVVSWTALIVAYTQHGRNREALELYKQMEGEGMEPDKVTFTS 350
Query: 156 LLCACTSPSNV 166
+L AC++ +++
Sbjct: 351 VLSACSNTNDL 361
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQ-PDVVLQNYILNMYGKCGSLEDARVVSDE 103
T+ ++S CS+ L+LG+ +H +L+ K D VL ++NMY KCG L+ +S E
Sbjct: 347 TFTSVLSACSNTNDLELGQALHARLLARKDGFSDGVLVAALINMYVKCGRLD----LSSE 402
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ Q + ++ + WNA+I + A+ L+ M+ R L PD T+ S+L AC
Sbjct: 403 IFQ-SCKDTKAVVVWNAMITAYEQEGYSRAAVDLYDMMKQRGLDPDESTLSSILSACA 459
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 74/145 (51%), Gaps = 9/145 (6%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK--SQPD 77
Q Y+ A V + ST + ++S C+ L+ L+ G +VH I++S+ SQ
Sbjct: 425 QEGYSRAAVDLYDMMKQRGLDPDESTLSSILSACAELKDLEKGEQVHVEIIASRDCSQNP 484
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
VVL N +++MY CG + +A+ V M R+V+ SW +I+ +A A+ L
Sbjct: 485 VVL-NALISMYASCGEIREAKAVFKRMKNRDVV------SWTILISAYVQGGDARRALRL 537
Query: 138 FSEMRDRELIPDGLTVRSLLCACTS 162
+ M + P +T+ +++ AC++
Sbjct: 538 YRRMLVEGVQPTEVTMLAVIAACSA 562
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 61/107 (57%), Gaps = 7/107 (6%)
Query: 35 NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSL 94
++T + T+A ++ CS L +++ G ++H+ + SS+ D+ L+ +++MY KC +
Sbjct: 644 SSTGIKANEGTFAGALAACSMLGAVREGYRIHEQVSSSRYSSDLSLKTALVHMYAKCNRV 703
Query: 95 EDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+ A V +++ PD+ +WNA+IA A A A+ L+S+M
Sbjct: 704 DAAFHVFEQL-------QPDVVAWNAMIAAYAQNGYAWHALELYSKM 743
>gi|168032055|ref|XP_001768535.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680248|gb|EDQ66686.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 505
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +++ CS+LRSL+ G KVH ++ +PD++L N +++MY KCG+L+ A V EM
Sbjct: 152 TFTTILNVCSTLRSLEKGMKVHQDMVRGGIRPDIILGNTLIDMYAKCGNLKQAHRVFKEM 211
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
R D+ +WN ++ G A +EA F M D PD +T S+L ACTS
Sbjct: 212 DNR------DIVTWNIMVGGAARNGYFDEAFEFFKAMLDEGQKPDKVTYISILNACTS 263
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 8/124 (6%)
Query: 41 IRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I PS+YA CL+ C+ ++ L G+ VH H+ S P + N ++NMY KCGSL DAR
Sbjct: 45 IEPSSYAYVCLLRRCTHMKDLAEGKYVHAHMAKSDFVPTTFVLNALVNMYMKCGSLVDAR 104
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V D M +R D+ ++ ++ G A +A ++ +M+ + D +T ++L
Sbjct: 105 QVFDRMVER------DMFTYTMMLTGYAKLGYPEDAYKMYEQMQKERVPVDRITFTTILN 158
Query: 159 ACTS 162
C++
Sbjct: 159 VCST 162
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y +++ C+ L ++ G+ VH HI+ S D++ +N +++MY KCG L+DA + +M
Sbjct: 352 YTTILNVCAMLGDIEKGKAVHGHIVQSGIATDIITENGLIDMYVKCGRLKDAYRLFQDMN 411
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165
R+V+ SW +I G EA+ F++M+ ++P+ +T +L AC +
Sbjct: 412 VRDVV------SWTTLIEGWVQHRQYQEALDTFNDMQLEGVMPNTVTFLGVLKACAGMGS 465
Query: 166 VL 167
++
Sbjct: 466 LV 467
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 11/140 (7%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AF+F + + +P TY +++ C+SL G +H I+ + + DV + ++N
Sbjct: 235 AFEFFKAMLDEGQKPDKVTYISILNACTSLEQ---GTLLHSVIMKAGFELDVRVGTALVN 291
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
M+ KCGS+ DA V ++PQRNV+ SW ++I+ A A+ +++M + +
Sbjct: 292 MFSKCGSVVDALKVFQKLPQRNVV------SWTSVISAYAQAGEPERALECYAKMLNEGM 345
Query: 147 IPDGLTVRSLLCACTSPSNV 166
+ D ++L C ++
Sbjct: 346 VADKRAYTTILNVCAMLGDI 365
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 81/144 (56%), Gaps = 7/144 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y EAL F+ +Q + + T A L+ C+ L +L+LG+ +H +I K + DV L
Sbjct: 189 YEEALSLFNEMQL-SGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGT 247
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCGS+E A V EMP+++V+ +W A+I G+A +A+ LF EM+
Sbjct: 248 ALVDMYAKCGSIESAMRVFQEMPEKDVM------TWTALIVGLAMCGQGLKALELFHEMQ 301
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
E+ PD +T +L AC+ V
Sbjct: 302 MSEVKPDAITFVGVLAACSHAGLV 325
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 29/143 (20%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L +C L G+++H H D +QN ++NMY CG L AR V D+M
Sbjct: 80 TFPSLFKSCGVLCE---GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKM 136
Query: 105 PQRNVIE--------------------------SPDLASWNAIIAGVASPSNANEAMSLF 138
++V+ + +L WN +I G S+ EA+SLF
Sbjct: 137 VNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLF 196
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
+EM+ + D +T+ SLL ACT
Sbjct: 197 NEMQLSGVKGDKVTMASLLIACT 219
>gi|302810635|ref|XP_002987008.1| hypothetical protein SELMODRAFT_182822 [Selaginella moellendorffii]
gi|300145173|gb|EFJ11851.1| hypothetical protein SELMODRAFT_182822 [Selaginella moellendorffii]
Length = 694
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L++ CSS L GRK+ + +S D+++ + I+N YGKCG L++AR D M
Sbjct: 151 TFVALLAACSSGGELAAGRKIAARVEASGLDSDLIVGSAIVNFYGKCGRLDEAREAFDRM 210
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P +N + +WN +IA A +AM LF+ M D ++PD + V S+L AC+
Sbjct: 211 PAKNNV------TWNGMIAAYVQSGAATQAMDLFATMEDEGVVPDAMAVSSILGACSG 262
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 35 NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILS------SKSQPDVVLQNYILNMY 88
N R T L+ CSSL LQ G+ +H I+ + D+++ N ++NMY
Sbjct: 34 NQEGDRADEVTLTTLLGACSSLEDLQQGKMIHSLIVELGYGEQDGEEQDLMVGNSLVNMY 93
Query: 89 GKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP 148
KC SL DA + D M R+V SW ++ A A+ + +M + P
Sbjct: 94 AKCRSLADAIAIFDRMKNRSVF------SWTIMVTAFAQNGQLQRAIQCYRQMCCDGVDP 147
Query: 149 DGLTVRSLLCACTSPSNV 166
+ +T +LL AC+S +
Sbjct: 148 NAVTFVALLAACSSGGEL 165
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 16/143 (11%)
Query: 26 ALVAFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQ 81
A A D + + P A ++ CS L S G+++H ++ + Q D +
Sbjct: 231 ATQAMDLFATMEDEGVVPDAMAVSSILGACSGLES---GKRIHSAVIDRRQELQSDRAVC 287
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE---AMSLF 138
N +++MY +CGSL+DAR+V +P +N + SW IIA A N ++ A LF
Sbjct: 288 NALVHMYARCGSLDDARLVFLAIPSKNTV------SWTTIIAAFAQQENRDDIEAAFQLF 341
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
EM + P +T+ L C+
Sbjct: 342 REMDLDGVAPSEVTIFYALETCS 364
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ C++ ++ LGR++H + ++ N ++ MYG G ++DA V E+ N
Sbjct: 468 ILGACTAHQATSLGRELHRRARELGYASNTIVGNALVFMYGSWGRVDDAARVFQELKNAN 527
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
SP+ ++ A+IAG A +A+SL++EM + P T S+ AC+
Sbjct: 528 ---SPNSNTFTAMIAGYARQGRTLQALSLYNEMNLHGVEPRDATFTSIFQACS 577
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 50 ISTCSSL--RSLQLGRKVHDHILSSKSQP---DVVLQNYILNMYGKCGSLEDARVV-SDE 103
+ TCS + L GR +H + ++ V + N +L+MY CGSL DA + D
Sbjct: 360 LETCSKMDRGGLASGRALHTAMDTAGRVELLSSVEVLNSLLDMYASCGSLIDAEAIFFDH 419
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ +NV D+ SW +IA ++ A+ L +M + D + + ++L ACT+
Sbjct: 420 LLGKNV----DVVSWTNMIAAYVQHGQSSSALLLAKKMDLEGVKSDEIAMSTILGACTA 474
>gi|383167277|gb|AFG66680.1| Pinus taeda anonymous locus 0_14992_02 genomic sequence
gi|383167278|gb|AFG66681.1| Pinus taeda anonymous locus 0_14992_02 genomic sequence
gi|383167279|gb|AFG66682.1| Pinus taeda anonymous locus 0_14992_02 genomic sequence
gi|383167280|gb|AFG66683.1| Pinus taeda anonymous locus 0_14992_02 genomic sequence
Length = 150
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 88/151 (58%), Gaps = 13/151 (8%)
Query: 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILS 71
+ ++P++ EAL F ++ + R T+A ++ C +L +L+ G+++H I
Sbjct: 11 AYAKNEPVE----EALKLFHEMKL-SGIRADHFTFASVLPVCGNLGNLEQGKEIHHEINR 65
Query: 72 SKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNA 131
S Q DV + + +++MY KCGS+EDAR V D+MP+R+VI SWN++I G A+
Sbjct: 66 SGYQSDVYVGSALVDMYVKCGSVEDARQVFDKMPRRDVI------SWNSMIGGYATHGPP 119
Query: 132 NEAMSLFSEMRDR--ELIPDGLTVRSLLCAC 160
EA+ LF M+D E+ P+ T S++ AC
Sbjct: 120 EEALRLFRRMKDEAAEVQPNLFTYASIIPAC 150
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 7/139 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y EAL F+ +Q + + T A L+ C+ L +L+LG+ +H +I K + DV L
Sbjct: 320 YEEALSLFNEMQL-SGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGT 378
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCGS+E A V EMP+++V+ +W A+I G+A +A+ LF EM+
Sbjct: 379 ALVDMYAKCGSIESAMRVFQEMPEKDVM------TWTALIVGLAMCGQGLKALELFHEMQ 432
Query: 143 DRELIPDGLTVRSLLCACT 161
E+ PD +T +L AC+
Sbjct: 433 MSEVKPDAITFVGVLAACS 451
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 6/113 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
+++ C+ R L+ ++VH +I + VL + ++++Y KCG AR + ++MP++N
Sbjct: 244 VLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKN 303
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
L WN +I G S+ EA+SLF+EM+ + D +T+ SLL ACT
Sbjct: 304 ------LFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACT 350
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L +C L G+++H H D +QN ++NMY CG L AR V D+M
Sbjct: 142 TFPSLFKSCGVLCE---GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKM 198
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++V+ SW +I A +EA+ LF M + P+ +T+ ++L AC
Sbjct: 199 VNKSVV------SWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACA 249
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 52/143 (36%), Positives = 80/143 (55%), Gaps = 7/143 (4%)
Query: 20 QNLY-NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+N Y NEAL F+ L F T AC++ C+SL + GR++H +I+ + D
Sbjct: 475 KNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR 534
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N +++MY KCG+L AR++ D+ I S DL SW +IAG EA++LF
Sbjct: 535 HVANSLVDMYAKCGALLLARLLFDD------ITSKDLVSWTVMIAGYGMHGFGKEAIALF 588
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
++MR + PD ++ SLL AC+
Sbjct: 589 NQMRQAGIEPDEISFVSLLYACS 611
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 80/148 (54%), Gaps = 12/148 (8%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ L EA+ F+ ++ I P Y +++ C+ R L G++VH+ I + D
Sbjct: 375 EGLAGEAVKLFEEMEEEG---ISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFD 431
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ + N +++MY KCGS+ +A +V EM +++I SWN +I G + ANEA+SL
Sbjct: 432 IFVSNALMDMYAKCGSMREAELVFSEMRVKDII------SWNTVIGGYSKNCYANEALSL 485
Query: 138 FSEMR-DRELIPDGLTVRSLLCACTSPS 164
F+ + ++ PD TV +L AC S S
Sbjct: 486 FNLLLVEKRFSPDERTVACVLPACASLS 513
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 6/124 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
+ I +T + + C+ R + LGR VH + + + N +L+MY KCG L+
Sbjct: 290 SGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDS 349
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
A+VV EM R+V+ S+ ++IAG A A EA+ LF EM + + PD TV ++
Sbjct: 350 AKVVFREMSGRSVV------SYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAV 403
Query: 157 LCAC 160
L C
Sbjct: 404 LNCC 407
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++C+ + SSLRS+ G ++H +IL S + N ++ Y K ++ AR V DEM
Sbjct: 197 TFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEM 256
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+R+VI SWN+II G S A + +S+F +M + D T+ S+ C
Sbjct: 257 TERDVI------SWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGC 306
>gi|383152414|gb|AFG58299.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
gi|383152415|gb|AFG58300.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
gi|383152416|gb|AFG58301.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
gi|383152417|gb|AFG58302.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
gi|383152418|gb|AFG58303.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
gi|383152419|gb|AFG58304.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
gi|383152421|gb|AFG58305.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
gi|383152422|gb|AFG58306.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
gi|383152424|gb|AFG58308.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
gi|383152425|gb|AFG58309.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
gi|383152427|gb|AFG58311.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
gi|383152428|gb|AFG58312.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
Length = 151
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 72/123 (58%), Gaps = 6/123 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
T+ ++ T+A ++ C+SL +L G+ +H+ I+ S Q V ++N +L+MY KCGSLED
Sbjct: 1 TDAKLDSHTFASILPACASLAALDQGKGIHEDIIRSGLQSYVTVENSLLDMYAKCGSLED 60
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
AR V + M R+V+ SWNA+I G A EA+ LF +M+ PD +T +
Sbjct: 61 ARKVFNRMTTRDVV------SWNAMIVGYAIHGCGKEALQLFEQMKHTGTGPDHVTFIGV 114
Query: 157 LCA 159
L A
Sbjct: 115 LSA 117
>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 748
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 7/144 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
NLY +AL + + + ST+AC +S C++L +LQ+G ++H++IL S D+ +
Sbjct: 435 NLYLDALKSL-VMMGKEGKKPDQSTFACTLSACANLAALQVGNQLHEYILKSGYMNDLFV 493
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N ++ MY KCG RV S E R+ IE DL SWN++I+G A AN+A F +
Sbjct: 494 GNALIAMYAKCG-----RVQSAEQVFRD-IECVDLISWNSLISGYALNGYANKAFKAFEQ 547
Query: 141 MRDRELIPDGLTVRSLLCACTSPS 164
M ++PD +T +L AC+
Sbjct: 548 MSSERVVPDEVTFIGMLSACSHAG 571
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N+ EA FD + NF ++A +I+ + L+ R++ + + + D
Sbjct: 93 NMVEEASELFDVMPERDNF-----SWALMITCYTRKGKLEKARELLELV---PDKLDTAC 144
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N ++ Y K G DA+ V ++MP + DL S+N+++AG + A+ F
Sbjct: 145 WNAMIAGYAKKGQFNDAKKVFEQMPAK------DLVSYNSMLAGYTQNGKMHLALQFFES 198
Query: 141 MRDRELIPDGLTV 153
M +R ++ L V
Sbjct: 199 MTERNVVSWNLMV 211
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 67 DHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVA 126
D + S DVV N ++ Y + G +++A + +MP +N + SWN +I+G A
Sbjct: 348 DQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMPIKNSV------SWNTMISGYA 401
Query: 127 SPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYLD 170
+ A +F MR++ ++ + L N LYLD
Sbjct: 402 QAGQMDRATEIFQAMREKNIVSWNSLIAGFL------QNNLYLD 439
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 59 LQLGR--KVHD--HILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPD 114
+QLG+ KV + I + + ++V N ++++ K + DAR + D+M RN++
Sbjct: 25 IQLGKLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQMSLRNLV---- 80
Query: 115 LASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
SWN +IAG + EA LF M +R+
Sbjct: 81 --SWNTMIAGYLHNNMVEEASELFDVMPERD 109
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
P+ V +L K G + +AR + D MP +NV+ SWNA+IA +EA+
Sbjct: 233 PNAVSWVTMLCGLAKYGKMAEARELFDRMPSKNVV------SWNAMIATYVQDLQVDEAV 286
Query: 136 SLFSEMRDRE 145
LF +M ++
Sbjct: 287 KLFKKMPHKD 296
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 25/92 (27%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV------------------------- 109
D V I+N Y + G L++AR V ++MP +++
Sbjct: 294 HKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLIQNGRIDEADQMFSR 353
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
I + D+ WN++IAG + +EA++LF +M
Sbjct: 354 IGAHDVVCWNSMIAGYSRSGRMDEALNLFRQM 385
>gi|255586679|ref|XP_002533966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526049|gb|EEF28413.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 515
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 72/118 (61%), Gaps = 6/118 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T ++S C+ L +L LG+ VH + S+ + +V + N +++MY KCG++E+A VV
Sbjct: 360 ATLVTVLSACARLGALDLGKWVHMYAQSNGYKGNVYIGNALIDMYAKCGNVENAIVVFKS 419
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ ++ DL SWN +I G+A A +A+ LFS M+D PDG+T +LCACT
Sbjct: 420 LDKK------DLISWNTLIGGLAVHGRAADALYLFSRMKDAGEKPDGITFLGVLCACT 471
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DV+ N +LN Y G +E + +EMP+RNV SWN +I G A E +S
Sbjct: 291 DVMSWNTLLNGYANGGDIEACERLFEEMPERNVF------SWNGLIGGYAHHGCFLEVLS 344
Query: 137 LFSEMR-DRELIPDGLTVRSLLCACT 161
F M D ++P+ T+ ++L AC
Sbjct: 345 SFKRMLVDGIVVPNDATLVTVLSACA 370
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
Q DVVL N +++ Y G L A+ + +MP + D+ SWN ++ G A+ +
Sbjct: 258 QRDVVLWNIMISGYIDIGDLVRAQELFHKMPNK------DVMSWNTLLNGYANGGDIEAC 311
Query: 135 MSLFSEMRDRELI 147
LF EM +R +
Sbjct: 312 ERLFEEMPERNVF 324
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
R+ L+ +C +L L ++ HI++ Q + + I+ + + A
Sbjct: 63 RLLEEKIISLLYSCKTLNHLH---QIQSHIINHGLQFNDYITPKIITSFALFKRMRHAHK 119
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD 149
+ D++P+ P++++WNA++ G + + E + LF +M +++P+
Sbjct: 120 LFDQIPE------PNVSNWNAMLKGYSLNDSHREVIVLFRKMISMDILPN 163
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 84/143 (58%), Gaps = 12/143 (8%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
++EA+ F +Q I+P T+ ++++CSS LQ G+++H ++ + DV
Sbjct: 330 FHDEAINLFRRMQQQG---IKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVY 386
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG-VASPSNANEAMSLF 138
LQ+ +++MY KCGS++DA +V ++M +RNV+ +W AII G A EA+ F
Sbjct: 387 LQSALVSMYAKCGSMDDASLVFNQMSERNVV------AWTAIITGCCAQHGRCREALEYF 440
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
+M+ + + PD +T S+L ACT
Sbjct: 441 DQMKKQGIKPDKVTFTSVLSACT 463
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 83/139 (59%), Gaps = 8/139 (5%)
Query: 28 VAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
VA + L+ + P+ T+A ++ C++ +L+ G+KVH +I+ S ++ + N ++
Sbjct: 232 VALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLI 291
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
MY KCG LE+AR + ++P R+V+ +W A++ G A +EA++LF M+ +
Sbjct: 292 TMYCKCGGLEEARKLFSDLPHRDVV------TWTAMVTGYAQLGFHDEAINLFRRMQQQG 345
Query: 146 LIPDGLTVRSLLCACTSPS 164
+ PD +T S+L +C+SP+
Sbjct: 346 IKPDKMTFTSVLTSCSSPA 364
Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 49/124 (39%), Positives = 69/124 (55%), Gaps = 6/124 (4%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
R+ + L+ C+ LRSL+ GR+VH IL S QP+ L+N +L+MY KCGSL DAR
Sbjct: 44 RVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARR 103
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V D + RN++ SW A+I + + EA + M+ PD +T SLL A
Sbjct: 104 VFDSIRDRNIV------SWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNA 157
Query: 160 CTSP 163
T+P
Sbjct: 158 FTNP 161
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L++ ++ LQLG+KVH I+ + + + + ++ MY KCG + ARV+ D +
Sbjct: 150 TFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRL 209
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P++NV+ +W +IAG A + A+ L M+ E+ P+ +T S+L CT+P+
Sbjct: 210 PEKNVV------TWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPA 263
>gi|255547359|ref|XP_002514737.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546341|gb|EEF47843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 374
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 79/136 (58%), Gaps = 9/136 (6%)
Query: 29 AFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A D I P +T +++ CS+L L +GR +H I ++ V + N I++
Sbjct: 217 ALDMFSRMLKLHIEPDEATLVVILAACSALGELDIGRWIHSCISNTGLGRFVEINNSIID 276
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG+LE+A ++M QRN + +WN +I G+A+ + NEA+ LFS+M +++L
Sbjct: 277 MYAKCGALEEAYEAFNKMSQRNTV------TWNTMILGLATHGHTNEALVLFSKMLEQKL 330
Query: 147 I-PDGLTVRSLLCACT 161
+ PD +T +LCAC+
Sbjct: 331 MEPDSVTFLGVLCACS 346
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ LI C L S+ LG+++H +L + V ++N +++MYG E +R + +E+
Sbjct: 134 TFSFLIKVCGQLGSVLLGKQMHCSVLKYGFESHVFVRNTLIHMYGIFKDFEISRQLFEEI 193
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P SP+L +WN +I EA+ +FS M + PD T+ +L AC++
Sbjct: 194 P------SPELVAWNTVIGCYVDCGRFKEALDMFSRMLKLHIEPDEATLVVILAACSA 245
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 85/146 (58%), Gaps = 11/146 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+ EAL F+ +Q N I P T A +IS C+ L +L LG+++H + + DV +
Sbjct: 154 FREALAVFNEMQTNG---IDPDEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYI 210
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ +++MY KCGSL+ + VV ++ ++N L WN+II G+A A EA+++FS
Sbjct: 211 GSALIDMYAKCGSLDKSLVVFFKLRKKN------LFCWNSIIEGLAVHGYAEEALAMFSR 264
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M+ ++ P+G+T S+L ACT V
Sbjct: 265 MQREKIKPNGVTFISVLGACTHAGLV 290
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 25/128 (19%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ L+ CS + L G VH HI V +Q +++ YG G + +AR V DEM
Sbjct: 12 TFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEARRVFDEM 71
Query: 105 PQRNVI-----------------------ESP--DLASWNAIIAGVASPSNANEAMSLFS 139
+R+V E P + ASWNA+I G + N A LFS
Sbjct: 72 SERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRLRNVESAELLFS 131
Query: 140 EMRDRELI 147
+M +R++I
Sbjct: 132 QMPNRDII 139
>gi|383152429|gb|AFG58313.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
gi|383152430|gb|AFG58314.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
Length = 151
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 72/123 (58%), Gaps = 6/123 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
T+ ++ T+A ++ C+SL +L G+ +H+ I+ S Q V ++N +L+MY KCGSLED
Sbjct: 1 TDAKLDSHTFASILPACASLAALDQGKGIHEDIIRSGLQSCVTVENSLLDMYAKCGSLED 60
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
AR V + M R+V+ SWNA+I G A EA+ LF +M+ PD +T +
Sbjct: 61 ARKVFNRMTTRDVV------SWNAMIVGYAIHGCGKEALQLFEQMKHTGTGPDHVTFIGV 114
Query: 157 LCA 159
L A
Sbjct: 115 LSA 117
>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 792
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 80/141 (56%), Gaps = 7/141 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L +A+ F +QN + F P T C++S C+ L +L LG+ VHD + S+ + + +
Sbjct: 399 GLTEDAISLFREMQN-SEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYV 457
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
++ MY KCGS+ +AR + D MP++N + +WN +I+G + EA+++FSE
Sbjct: 458 STALIGMYAKCGSIAEARRLFDFMPKKNEV------TWNTMISGYGLHGHGQEALTIFSE 511
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M + + P +T +L AC+
Sbjct: 512 MLNSGIAPTPVTFLCVLYACS 532
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+ +L F L+ +T+ + STYA IS S R + G +H + +++L +
Sbjct: 100 HSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIVDGCDSELLLGSN 159
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
I+ MY K +EDAR V D MP+++ I WN +I+G E++ +F ++
Sbjct: 160 IVKMYFKFWRVEDARKVFDRMPEKDTI------LWNTMISGYRKNEMYVESIQVFRDL 211
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 9/121 (7%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
+++ ST L+ L L +H + L S + + +Y K +E AR
Sbjct: 319 KLKSSTLVSLVPVSGHL---MLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARK 375
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ DE P+++ L SWNA+I+G +A+SLF EM++ E P+ +T+ +L A
Sbjct: 376 LFDESPEKS------LPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSA 429
Query: 160 C 160
C
Sbjct: 430 C 430
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 12/124 (9%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS---QPD 77
+Y E++ F L N + R+ +T ++ + L+ L+LG ++H L++K+ D
Sbjct: 199 EMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHS--LATKTGCYSHD 256
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
VL +I ++Y KCG ++ A + E + PD+ ++NA+I G S ++SL
Sbjct: 257 YVLTGFI-SLYSKCGKIKMASTLFREFRR------PDIVAYNAMIHGYTSNGETELSLSL 309
Query: 138 FSEM 141
F E+
Sbjct: 310 FKEL 313
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 79/138 (57%), Gaps = 6/138 (4%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
NEAL+ F LQ N ++ T +S C+ + +L+LGR +H +I + + + +
Sbjct: 346 NEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSA 405
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+++MY KCG LE +R V N +E D+ W+A+I G+A NEA+ +F +M++
Sbjct: 406 LIHMYSKCGDLEKSREVF------NSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQE 459
Query: 144 RELIPDGLTVRSLLCACT 161
+ P+G+T ++ CAC+
Sbjct: 460 ANVKPNGVTFTNVFCACS 477
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 72/143 (50%), Gaps = 26/143 (18%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S C+ +R+L+ GR+V +I ++ ++ L N +L+MY KCGS+EDA+ + D M
Sbjct: 234 TMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAM 293
Query: 105 PQR-------------------------NVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
++ N + D+ +WNA+I+ NEA+ +F
Sbjct: 294 EEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFH 353
Query: 140 EMR-DRELIPDGLTVRSLLCACT 161
E++ + + + +T+ S L AC
Sbjct: 354 ELQLQKNMKLNQITLVSTLSACA 376
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ LI + + SL LG+ +H + S DV + N +++ Y CG L+ A V +
Sbjct: 133 TFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTI 192
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+++V+ SWN++I G + ++A+ LF +M ++ +T+ +L AC
Sbjct: 193 KEKDVV------SWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIR 246
Query: 165 NVLY 168
N+ +
Sbjct: 247 NLEF 250
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSK--SQPDVVLQNYILNMYGKCGSLEDARVVS 101
S + LI C SLR L ++ H H++ + S P + + + SLE AR V
Sbjct: 31 SRHISLIERCVSLRQL---KQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVF 87
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSLLCAC 160
DE+P+ P+ +WN +I AS + ++ F +M + + P+ T L+ A
Sbjct: 88 DEIPK------PNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAA 141
Query: 161 TSPSNV 166
S++
Sbjct: 142 AEVSSL 147
>gi|302820136|ref|XP_002991736.1| hypothetical protein SELMODRAFT_40989 [Selaginella moellendorffii]
gi|300140417|gb|EFJ07140.1| hypothetical protein SELMODRAFT_40989 [Selaginella moellendorffii]
Length = 589
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 52/147 (35%), Positives = 89/147 (60%), Gaps = 11/147 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
NEALV +++ + + P TY L+ CS+L +L+ GR +H +++S + +VV+
Sbjct: 329 NEALVLSQRMKD-SGATVVPDRVTYVILLHACSNLGALREGRMIHASVIASGMESNVVVA 387
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
I+NMYGKCGS+ DA++V D+MP ++VI WN++I+ A A+ L++ M
Sbjct: 388 TAIVNMYGKCGSMGDAKMVFDKMPAKDVI------CWNSMISAYALNGLGKSALDLYARM 441
Query: 142 RD--RELIPDGLTVRSLLCACTSPSNV 166
R R L P+ +T SLL +C++ +++
Sbjct: 442 RHSCRGLKPNRITFVSLLSSCSAANSL 468
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 8/81 (9%)
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
I+ MYG+CGSL DAR V D P P++ SWN ++A A ++NEA+ L M+D
Sbjct: 287 IIEMYGECGSLIDARKVFDRTP------DPNIFSWNIMLAAYAHNGHSNEALVLSQRMKD 340
Query: 144 R--ELIPDGLTVRSLLCACTS 162
++PD +T LL AC++
Sbjct: 341 SGATVVPDRVTYVILLHACSN 361
>gi|255553251|ref|XP_002517668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543300|gb|EEF44832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 512
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 13/156 (8%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N + EALV F +Q +N + T +++ C+ L +L+LG V +I +K + D +
Sbjct: 300 NCFKEALVLFHEMQT-SNVKPDEFTMVSILTACAQLGALELGEWVRTYIDKNKVKNDAYV 358
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MY KCG++E AR + + MP+ PD +W A+I G+A EA+ +F +
Sbjct: 359 GNALIDMYFKCGNVEKARSIFNSMPR------PDKFTWTAMIVGLAINGYGEEALDMFVQ 412
Query: 141 MRDRELIPDGLTVRSLLCACTSPS------NVLYLD 170
M + PD +T +LCACT N+LY D
Sbjct: 413 MLKASVTPDEITYVGVLCACTHTGMVDEGRNLLYED 448
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 27/148 (18%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
R+ PS T ++S CS L+ L+ G+KVH +I Q +++++N +++MY CG + A
Sbjct: 184 RVLPSSVTLVSVLSACSKLKDLESGQKVHKYISDHVVQSNLIVENALIDMYAACGEMSVA 243
Query: 98 RVVSDEMPQRNVIE-------------------------SPDLASWNAIIAGVASPSNAN 132
+ + M R+VI D SW A+I G +
Sbjct: 244 LGIFESMKSRDVISWTAIVTGFANIGQLDIARKYFDQMPERDYVSWTAMIDGYLQVNCFK 303
Query: 133 EAMSLFSEMRDRELIPDGLTVRSLLCAC 160
EA+ LF EM+ + PD T+ S+L AC
Sbjct: 304 EALVLFHEMQTSNVKPDEFTMVSILTAC 331
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY LI + + G+++H H++ +V +QN ++NMY CG + AR + D M
Sbjct: 90 TYPFLIKGFKKDIAFEYGKELHCHVVKYGLGSNVFVQNALINMYSLCGLTDMARGIFD-M 148
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ D+ +WNA+I+ ++ +LF EM + ++P +T+ S+L AC+
Sbjct: 149 SYKT-----DVVTWNAMISAYNRIKQYDKTKTLFHEMEKKRVLPSSVTLVSVLSACS 200
>gi|302822438|ref|XP_002992877.1| hypothetical protein SELMODRAFT_136113 [Selaginella moellendorffii]
gi|300139325|gb|EFJ06068.1| hypothetical protein SELMODRAFT_136113 [Selaginella moellendorffii]
Length = 630
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 49/118 (41%), Positives = 69/118 (58%), Gaps = 9/118 (7%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P T+A ++ L +L+ GRKVH H+ S +VV+QN ++ MYGKCGSL +A+ V D
Sbjct: 257 PYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVIQNALVTMYGKCGSLVEAQKVFD 316
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
M RNVI SW ++IA A N EA++LF M ++ P G++ S L AC
Sbjct: 317 SMTARNVI------SWTSMIAAYAQHGNPQEALNLFKRM---DVEPSGVSFSSALNAC 365
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L++ C+ L++L+ GR++H+H++ + D+ L+ +L MYGKCGSL+DA+ V + M
Sbjct: 60 LVAACTKLQALEEGRQLHEHLIIMGFRTDIPLETALLQMYGKCGSLDDAKRVFEGM---- 115
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
E DL +W++II+ A A+ L+ M + P+ +T + C S
Sbjct: 116 --EIKDLFTWSSIISVYAHAGWGEMAVVLYRRMISEGVEPNVVTFACAVGGCAS 167
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+AC + C+S+ L GR +H IL SK D VLQ+ +LNMY KC + ++R V + M
Sbjct: 157 TFACAVGGCASVAGLADGRAIHQRILVSKVLQDDVLQDSLLNMYLKCDEMVESRKVFEGM 216
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCACTSP 163
RNV S+ A+I+ EA+ L S M E I P+ T ++L A
Sbjct: 217 KARNV------RSYTAMISAYVQAGEQAEALELVSRMSKVEAIEPNPYTFATILGAVEGL 270
Query: 164 SNV 166
N+
Sbjct: 271 GNL 273
>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
Length = 650
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/126 (35%), Positives = 74/126 (58%), Gaps = 8/126 (6%)
Query: 36 NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
+ F T ++ C+ + L+ GR+VH H+L K + D++L N +L+MY KCGSLE
Sbjct: 273 DAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHVL--KYERDLILHNALLDMYCKCGSLE 330
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
DA + MPQR+VI SW+ +I+G+A + EA+ +F M+ + P+ +T+
Sbjct: 331 DAEALFHRMPQRDVI------SWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVG 384
Query: 156 LLCACT 161
+L AC+
Sbjct: 385 VLFACS 390
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 15/133 (11%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHI--------LSSKSQPDVVLQNYILNMYGKC 91
R P + L+ C + GR +H H+ S + + + N +++MY K
Sbjct: 69 RADPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKF 128
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPS-NANEAMSLFSEMRDRELIPDG 150
G L+DA + D MP+RNV+ +W ++A +A+ EA+ M + P+
Sbjct: 129 GLLDDALRLFDRMPERNVV------TWTTVVAALANADGRKEEALRFLVAMWRDGVAPNA 182
Query: 151 LTVRSLLCACTSP 163
T S+L AC +P
Sbjct: 183 YTFSSVLGACGTP 195
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ ++ C + L +H + DV +++ +++ Y K G L+ R V DEM
Sbjct: 184 TFSSVLGACGTPGVLA---ALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEM 240
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R DL WN+IIAG A + A+ LF M+D + T+ S+L ACT
Sbjct: 241 VTR------DLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACT 291
>gi|255581962|ref|XP_002531779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528572|gb|EEF30593.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 518
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 73/125 (58%), Gaps = 8/125 (6%)
Query: 38 NFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
F IRP ST + L+ CS L +LQLGR+VH + S D+ +++MY KCG LE
Sbjct: 302 GFGIRPNPSTLSSLLLGCSELSALQLGRQVHQLVCKSPLASDMTAGTSLVSMYCKCGDLE 361
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
DA + E+P+++V+ +WNA+I+G A +A+ LF EM+ + PD +T +
Sbjct: 362 DAWKLFLELPRKDVV------TWNAMISGYALHGAGEKALRLFDEMKKEGITPDWITFVA 415
Query: 156 LLCAC 160
+L AC
Sbjct: 416 VLLAC 420
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 36/163 (22%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDH-ILSSKSQPDVVLQNY 83
+A FD + N P+++ LIS S Q G+ H + +VV N
Sbjct: 168 KAQAFFDLIPNKD-----PASWNTLISGFS-----QNGKMAKAHKLFLQMPYKNVVTWNA 217
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVI-------------------------ESPDLASW 118
+++ Y CG L A + MP +NV+ + ++ +W
Sbjct: 218 MISGYIACGDLTSAWKLFKTMPVKNVVACTAMITGYMKLGFIKLAEKLFKEMSTDNVVTW 277
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
NA+I+G S A + + LF M + P+ T+ SLL C+
Sbjct: 278 NAMISGFIENSRAEDGVKLFRTMVGFGIRPNPSTLSSLLLGCS 320
>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Vitis vinifera]
Length = 732
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 73/125 (58%), Gaps = 8/125 (6%)
Query: 40 RIRPST--YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
R+ PST A +++ C+ L S LG VH +IL + + D+ QN ++ MY KCG LE +
Sbjct: 343 RVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQS 402
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
V D M +R D+ SWNAI++G A + +A+ LF+EMR PD +TV SLL
Sbjct: 403 CSVFDRMSRR------DIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLL 456
Query: 158 CACTS 162
AC S
Sbjct: 457 QACAS 461
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 11/139 (7%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+AL+ F+ ++ R RP T L+ C+S+ +L G+ +H+ + S P +++
Sbjct: 432 KALLLFNEMRKA---RQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDT 488
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG L A+ D MPQ+ DL SW++IIAG S A+ ++S+
Sbjct: 489 ALVDMYSKCGDLGSAQKCFDRMPQQ------DLVSWSSIIAGYGSHGKGETALRMYSDFL 542
Query: 143 DRELIPDGLTVRSLLCACT 161
+ P+ + S+L AC+
Sbjct: 543 HTGIQPNHVIYLSILSACS 561
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+S + L +G+ VH HIL + + D ++ ++ MY KCG++ A + + M
Sbjct: 249 TFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGM 308
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
++VI SW A+I+G+ A+ A+++F M ++P T+ S+L AC
Sbjct: 309 MHKDVI------SWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAAC 358
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 68/145 (46%), Gaps = 11/145 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
E VAF I+PS T L+S L LQ +H ++ DV L
Sbjct: 128 GEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQC---LHACVIQYGFGSDVALA 184
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N +LN+Y KCG +EDA+ + + M R+VI SWN++++G A N E + L M
Sbjct: 185 NSMLNVYCKCGRVEDAQALFELMDARDVI------SWNSLVSGYAQLGNIREVLQLLIRM 238
Query: 142 RDRELIPDGLTVRSLLCACTSPSNV 166
+ + PD T SL+ A S +
Sbjct: 239 KTDGIEPDQQTFGSLVSAAAMQSKL 263
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 6/113 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ C+SL G H ++ D + ++N Y K G + AR V D M
Sbjct: 50 TFPSLVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTM 109
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
RNV+ W +I + A S+++ MR + + P +T+ LL
Sbjct: 110 DDRNVVP------WTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLL 156
>gi|302803540|ref|XP_002983523.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
gi|300148766|gb|EFJ15424.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
Length = 506
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 83/139 (59%), Gaps = 11/139 (7%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A D + + + P+ T+A ++S CSSL +L+ G+ VH + ++ +PD+ + N +++
Sbjct: 145 ALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVS 204
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
+YGKCGS++ AR V D M RNV+ SW A+I+ A ++ EA+ L+ M ++
Sbjct: 205 LYGKCGSVDSARKVFDRMKIRNVV------SWTAMISSYAHHRHSEEAIQLYKAM---DV 255
Query: 147 IPDGLTVRSLLCACTSPSN 165
P+ +T+ S+L AC S N
Sbjct: 256 APNAVTLASVLSACASLGN 274
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY +++ CS++ +L+ G++VH ++ + Q D +N ++NMY KCGS+ +AR V D M
Sbjct: 62 TYTTVLAACSAVEALEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDGM 121
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
QR V+ SW II+ + EA+ L+ +M + P+G+T S+L AC+S
Sbjct: 122 KQRTVV------SWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSS 173
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLEDARVVSD 102
T A ++S C+SL + + GR VH+ + S+ + D VLQN +LNMY KCG + AR + D
Sbjct: 261 TLASVLSACASLGNAEEGRAVHEKLASTTTGLATDEVLQNALLNMYAKCGDGDAARKIFD 320
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
M R D SW+ +IA EA+ + M + ++L AC+
Sbjct: 321 AMAVR------DTMSWSTLIAAYTQHGRGGEAVEMCRSMELEGVQASSFIYGTVLTACS 373
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE- 145
M+ KCGSL+++R V D+ ++V+ WN++I + + EA+ LF M
Sbjct: 1 MFAKCGSLKESREVFDDCRWKDVL------FWNSMIVAYSQSGHPREAIELFKSMGSSSP 54
Query: 146 -LIPDGLTVRSLLCACTS 162
+ P+ +T ++L AC++
Sbjct: 55 PVEPNAITYTTVLAACSA 72
>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Glycine max]
Length = 693
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 47/113 (41%), Positives = 64/113 (56%), Gaps = 6/113 (5%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
L + T+ R Y+ LI+ C R+L+LGR+VH H +S P V + N +L+MY KCG
Sbjct: 77 LLHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCG 136
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
SL DA+++ DEM R DL SWN +I G A +A LF EM R+
Sbjct: 137 SLVDAQMLFDEMGHR------DLCSWNTMIVGYAKLGRLEQARKLFDEMPQRD 183
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 8/123 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP+ T+A +++ C+ + LG++VH +++ + P + +++MY KCG+ AR
Sbjct: 317 VRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVAR 376
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V +EM Q PDL SW ++I G A +EA+ F + PD +T +L
Sbjct: 377 RVFNEMHQ------PDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLS 430
Query: 159 ACT 161
ACT
Sbjct: 431 ACT 433
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
N EAL F +Q + T + ++ +++ L+LG+++H +++ ++ D V
Sbjct: 197 HNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEV 256
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ + +L++YGKCGSL++AR + D+M R+V+ SW +I E LF
Sbjct: 257 VWSALLDLYGKCGSLDEARGIFDQMKDRDVV------SWTTMIHRCFEDGRREEGFLLFR 310
Query: 140 EMRDRELIPDGLTVRSLLCAC 160
++ + P+ T +L AC
Sbjct: 311 DLMQSGVRPNEYTFAGVLNAC 331
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 80/138 (57%), Gaps = 6/138 (4%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
NEAL+ F LQ N ++ T +S C+ + +L+LGR +H +I + + + + +
Sbjct: 348 NEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSA 407
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+++MY KCG LE AR V N +E D+ W+A+I G+A +EA+ +F +M++
Sbjct: 408 LIHMYSKCGDLEKAREVF------NSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQE 461
Query: 144 RELIPDGLTVRSLLCACT 161
+ P+G+T ++ CAC+
Sbjct: 462 ANVKPNGVTFTNVFCACS 479
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 26/143 (18%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S C+ +R L+ GR+V +I ++ ++ L N +L+MY KCGS+EDA+ + D M
Sbjct: 236 TMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAM 295
Query: 105 PQR-------------------------NVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
++ N + D+ +WNA+I+ NEA+ +F
Sbjct: 296 EEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFH 355
Query: 140 EMRDRELIP-DGLTVRSLLCACT 161
E++ ++ I + +T+ S L AC
Sbjct: 356 ELQLQKNIKLNQITLVSTLSACA 378
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ LI + + SL LG+ +H + S DV + N +++ Y CG L+ A V +
Sbjct: 135 TFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTI 194
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+++V+ SWN++I G + ++A+ LF +M ++ +T+ +L AC
Sbjct: 195 KEKDVV------SWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACA 245
Score = 38.9 bits (89), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSK--SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
LI CSSLR L ++ H H++ + S P + + + SLE AR V DE+PQ
Sbjct: 37 LIDRCSSLRQL---KQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQ 93
Query: 107 RNVIESPDLASWNAIIAGVAS 127
P+ +WN +I AS
Sbjct: 94 ------PNSFTWNTLIRAYAS 108
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 57/161 (35%), Positives = 82/161 (50%), Gaps = 15/161 (9%)
Query: 7 TQLRFTFYNSQ----PIQNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQ 60
TQ YN+ NL EAL FD LQ ++P TY +++ C++ SL+
Sbjct: 609 TQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEG---LKPDKVTYINMLNACANSGSLE 665
Query: 61 LGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNA 120
+++H +L D L N +++ Y KCGS DA +V D+M +RNVI SWNA
Sbjct: 666 WAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVI------SWNA 719
Query: 121 IIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
II G A + + LF M+ + PD +T SLL AC+
Sbjct: 720 IIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACS 760
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 79/142 (55%), Gaps = 7/142 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F +Q + TY +++ CSS +L GR++H ++ + D + N +
Sbjct: 530 EALAVFQDMQQ-AGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTL 588
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+NMY CGS++DAR V D M QR D+ ++NA+I G A+ + EA+ LF +++
Sbjct: 589 VNMYSMCGSVKDARQVFDRMTQR------DIVAYNAMIGGYAAHNLGKEALKLFDRLQEE 642
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
L PD +T ++L AC + ++
Sbjct: 643 GLKPDKVTYINMLNACANSGSL 664
Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 76/120 (63%), Gaps = 6/120 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY L++ C + +L GR++H ++ D+ +QN +++MY +CGS++DAR++ ++M
Sbjct: 448 TYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKM 507
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
++++I SW A+I G+A EA+++F +M+ L P+ +T S+L AC+SP+
Sbjct: 508 VRKDII------SWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPA 561
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 77/139 (55%), Gaps = 8/139 (5%)
Query: 28 VAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
+AF+ Q + P+ TY +++ S +L+ G+ VH HIL++ + D+ + ++
Sbjct: 328 IAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALV 387
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
MY KCGS +D R V +++ R DL +WN +I G+A N EA ++ +M+
Sbjct: 388 KMYAKCGSYKDCRQVFEKLVNR------DLIAWNTMIGGLAEGGNWEEASEIYHQMQREG 441
Query: 146 LIPDGLTVRSLLCACTSPS 164
++P+ +T LL AC +P+
Sbjct: 442 MMPNKITYVILLNACVNPT 460
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 40/116 (34%), Positives = 69/116 (59%), Gaps = 6/116 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+S+C S +L+ GR++H + ++ DV + N ILNMY KCGS+ +AR V D+M ++
Sbjct: 250 LLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKS 309
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
V+ SW II G A ++ A +F +M+ ++P+ +T ++L A + P+
Sbjct: 310 VV------SWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPA 359
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 9/143 (6%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+ A+ +LQ R+ Y ++ C ++ L GR+VH+HI+ + D N
Sbjct: 123 DRAMDVVQYLQQQ-GARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNA 181
Query: 84 ILNMYGKCGSLEDARVVSDEM--PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
++NMY +CGS+E+AR V +++ +R V SWNA++ G EA+ L EM
Sbjct: 182 LINMYIQCGSIEEARQVWNKLNHTERTV------HSWNAMVVGYVQYGYIEEALKLLREM 235
Query: 142 RDRELIPDGLTVRSLLCACTSPS 164
+ L T LL +C SPS
Sbjct: 236 QQHGLALGRATTMRLLSSCKSPS 258
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 52/143 (36%), Positives = 82/143 (57%), Gaps = 12/143 (8%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+L NEAL F +Q + RP T ACL+ C SL +L++GR +H IL + ++
Sbjct: 835 SLPNEALKLFAEMQKES----RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSEL 890
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N +++MY KCGSL AR++ D +P++ DL +W +I+G NEA++ F
Sbjct: 891 HVANALIDMYVKCGSLVHARLLFDMIPEK------DLITWTVMISGCGMHGLGNEAIATF 944
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
+MR + PD +T S+L AC+
Sbjct: 945 QKMRIAGIKPDEITFTSILYACS 967
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 49/145 (33%), Positives = 84/145 (57%), Gaps = 12/145 (8%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ LY++A+ F +++ + P Y+ ++ C+ SL GR VH++I +
Sbjct: 733 EGLYDDAIRLFYEMESKG---VSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALC 789
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ + N +++MY KCGS+E+A +V ++P + D+ SWN +I G + S NEA+ L
Sbjct: 790 LPVSNALMDMYAKCGSMEEAYLVFSQIPVK------DIVSWNTMIGGYSKNSLPNEALKL 843
Query: 138 FSEMRDRELIPDGLTVRSLLCACTS 162
F+EM+ +E PDG+T+ LL AC S
Sbjct: 844 FAEMQ-KESRPDGITMACLLPACGS 867
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 63/111 (56%), Gaps = 6/111 (5%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
++ C+++ SL LGR +H + + +V+ N +L+MY KCG+L DA ++M Q+ V
Sbjct: 661 VAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTV 720
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ SW ++IA ++A+ LF EM + + PD ++ S+L AC
Sbjct: 721 V------SWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHAC 765
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Query: 29 AFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY 88
A + L+ + + + Y+ ++ C+ + LQ G+ VH I S+ + VL ++ MY
Sbjct: 437 AVELLRMSQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMY 496
Query: 89 GKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP 148
CG+L + R + D + N + WN +++ A + E++ LF +M+ +
Sbjct: 497 VSCGALREGRRIFDHILSDNKV-----FLWNLMMSEYAKIGDYRESIYLFKKMQKLGITG 551
Query: 149 DGLTVRSLL 157
+ T +L
Sbjct: 552 NSYTFSCIL 560
Score = 38.9 bits (89), Expect = 0.70, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 10/120 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHI--LSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
T++C++ ++L + +++H + L S VV N ++ Y K G ++ A + D
Sbjct: 555 TFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVV--NSLIATYFKSGEVDSAHKLFD 612
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
E+ R+V+ SWN++I+G ++ A+ F +M + D T+ + + AC +
Sbjct: 613 ELGDRDVV------SWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACAN 666
>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
Length = 907
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 73/125 (58%), Gaps = 8/125 (6%)
Query: 40 RIRPST--YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
R+ PST A +++ C+ L S LG VH +IL + + D+ QN ++ MY KCG LE +
Sbjct: 343 RVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQS 402
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
V D M +R D+ SWNAI++G A + +A+ LF+EMR PD +TV SLL
Sbjct: 403 CSVFDRMSRR------DIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLL 456
Query: 158 CACTS 162
AC S
Sbjct: 457 QACAS 461
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 11/139 (7%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+AL+ F+ ++ R RP T L+ C+S+ +L G+ +H+ + S P +++
Sbjct: 432 KALLLFNEMRKA---RQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDT 488
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG L A+ D MPQ+ DL SW++IIAG S A+ ++S+
Sbjct: 489 ALVDMYSKCGDLGSAQKCFDRMPQQ------DLVSWSSIIAGYGSHGKGETALRMYSDFL 542
Query: 143 DRELIPDGLTVRSLLCACT 161
+ P+ + S+L AC+
Sbjct: 543 HTGIQPNHVIYLSILSACS 561
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+S + L +G+ VH HIL + + D ++ ++ MY KCG++ A + + M
Sbjct: 249 TFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGM 308
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++VI SW A+I+G+ A+ A+++F M ++P T+ S+L AC
Sbjct: 309 MHKDVI------SWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACA 359
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 68/145 (46%), Gaps = 11/145 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
E VAF I+PS T L+S L LQ +H ++ DV L
Sbjct: 128 GEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQC---LHACVIQYGFGSDVALA 184
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N +LN+Y KCG +EDA+ + + M R+VI SWN++++G A N E + L M
Sbjct: 185 NSMLNVYCKCGRVEDAQALFELMDARDVI------SWNSLVSGYAQLGNIREVLQLLIRM 238
Query: 142 RDRELIPDGLTVRSLLCACTSPSNV 166
+ + PD T SL+ A S +
Sbjct: 239 KTDGIEPDQQTFGSLVSAAAMQSKL 263
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 6/113 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ C+SL G H ++ D + ++N Y K G + AR V D M
Sbjct: 50 TFPSLVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTM 109
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
RNV+ W +I + A S+++ MR + + P +T+ LL
Sbjct: 110 DDRNVV------PWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLL 156
>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 907
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
ST+AC +S+C++L +LQ+G+++H+ IL S D+ + N ++ MY KCG ++ A V +
Sbjct: 457 STFACSLSSCANLAALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEKVFKD 516
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
IE DL SWN++I+G A ANEA F +M +PD +T +L AC+
Sbjct: 517 ------IEGVDLISWNSLISGYALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHA 570
Query: 164 S 164
Sbjct: 571 G 571
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 14/140 (10%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N+ EA FD + NF ++A +I+ + L+ R++ + + + D
Sbjct: 93 NMVEEAHKLFDLMAERDNF-----SWALMITCYTRKGMLEKARELFELV---PDKLDTAC 144
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N ++ Y K G +DA V ++MP + DL S+N+++AG AM F
Sbjct: 145 WNAMIAGYAKKGRFDDAEKVFEKMPVK------DLVSYNSMLAGYTQNGKMGLAMKFFER 198
Query: 141 MRDRELIPDGLTVRSLLCAC 160
M +R ++ L V + C
Sbjct: 199 MAERNVVSWNLMVAGFVNNC 218
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++ ++ K G + DAR + D+M QRN L SWN +IAG + EA LF M
Sbjct: 52 NSMVTVFAKNGRVSDARQLFDKMSQRN------LVSWNTMIAGYLHNNMVEEAHKLFDLM 105
Query: 142 RDRE 145
+R+
Sbjct: 106 AERD 109
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 14/94 (14%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
A ++ C + +L K+ D P+ V +L + + G + +AR + D MP
Sbjct: 212 AGFVNNCDLGSAWELFEKIPD--------PNAVSWVTMLCGFARHGKIVEARKLFDRMPC 263
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+NV+ SWNA+IA +EA+ LF E
Sbjct: 264 KNVV------SWNAMIAAYVQDLQIDEAVKLFKE 291
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 12/103 (11%)
Query: 68 HILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127
+ S ++ D + N ++ Y + G + +A + +MP +N + SWN +I+G A
Sbjct: 349 QVFSQLNKRDAICWNSMIAGYCQSGRMSEALNLFRQMPVKNAV------SWNTMISGYAQ 402
Query: 128 PSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYLD 170
+ A +F M R +I + L N LYLD
Sbjct: 403 AGEMDRATEIFEAMGVRNVISWNSLITGFL------QNGLYLD 439
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
D V ++N Y + G L++AR V ++MP + D+A+ A+++G+ +EA
Sbjct: 295 KDCVSWTTMINGYVRVGKLDEAREVYNQMPYK------DVAAKTALMSGLIQNGRIDEAS 348
Query: 136 SLFSEMRDRELI 147
+FS++ R+ I
Sbjct: 349 QVFSQLNKRDAI 360
>gi|255562765|ref|XP_002522388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538466|gb|EEF40072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 472
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 77/148 (52%), Gaps = 12/148 (8%)
Query: 29 AFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A D +FR+ P +T ++S C + L +G+K+H++I + S V L N +++
Sbjct: 305 ALDLFHEMHSFRVVPNEATLLSVLSACGQIGDLVMGKKIHNYICGTSSMYSVTLCNSLID 364
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG+L A V +EMP +N L SWN II +A EA+ LF +M+ +
Sbjct: 365 MYAKCGALRIAIDVFNEMPNKN------LVSWNVIIGALALHGYGVEAVELFRKMQAAGV 418
Query: 147 IPDGLTVRSLLCACTSP----SNVLYLD 170
PD +T LL AC+ S + Y D
Sbjct: 419 WPDEITFMGLLSACSHSGLVDSGLYYFD 446
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 25/144 (17%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+ CS + LGR VH +I + + D+V +N +++MY KCG+L A V +MP +N
Sbjct: 195 LLLVCSRRCDINLGRFVHLYIQITGMKIDLVARNALIDMYAKCGALVLAERVFQQMPNKN 254
Query: 109 VIE-------------------------SPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
V+ ++ SWN++I+ EA+ LF EM
Sbjct: 255 VVSWTSMITAYAKQGLVEYARKSFDQMPEKNVVSWNSMISSYVQGGQCREALDLFHEMHS 314
Query: 144 RELIPDGLTVRSLLCACTSPSNVL 167
++P+ T+ S+L AC +++
Sbjct: 315 FRVVPNEATLLSVLSACGQIGDLV 338
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C+S + + VH H + +QN ++N Y CG + AR + D+M
Sbjct: 90 TFPFVLKACASKSAHWMSMIVHGHAQKLGFASLICVQNGLINAYIACGFIRYARKMFDDM 149
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+R+ L SWN++I G + E LF EMR+ D T+ +LL C+
Sbjct: 150 SERS------LVSWNSMIGGYSKLGWCKEVFLLFKEMREIGTEADDFTLVNLLLVCSRRC 203
Query: 165 NV 166
++
Sbjct: 204 DI 205
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 76/120 (63%), Gaps = 6/120 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY L++ C + +L G+++H + + D+ +QN +++MY +CGS++DAR+V D+M
Sbjct: 330 TYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKM 389
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+++VI SW A+I G+A EA++++ EM+ + P+ +T S+L AC+SP+
Sbjct: 390 VRKDVI------SWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPA 443
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 52/144 (36%), Positives = 77/144 (53%), Gaps = 11/144 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
NL EAL FD LQ ++P TY +++ C++ SL+ R++H + D
Sbjct: 508 HNLGKEALKLFDRLQEEG---LKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSD 564
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ N +++ Y KCGS DA +V ++M +RNVI SWNAII G A +A+ L
Sbjct: 565 TSVGNALVSTYAKCGSFSDASIVFEKMTKRNVI------SWNAIIGGSAQHGRGQDALQL 618
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F M+ + PD +T SLL AC+
Sbjct: 619 FERMKMEGVKPDIVTFVSLLSACS 642
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/144 (32%), Positives = 82/144 (56%), Gaps = 11/144 (7%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
EAL + +Q + P+ TY +++ CSS +L+ GR++H ++ + D + N
Sbjct: 412 EALTVYQEMQQAG---VEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGN 468
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++NMY CGS++DAR V D M QR D+ ++NA+I G A+ + EA+ LF ++
Sbjct: 469 TLVNMYSMCGSVKDARQVFDRMIQR------DIVAYNAMIGGYAAHNLGKEALKLFDRLQ 522
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
+ L PD +T ++L AC + ++
Sbjct: 523 EEGLKPDKVTYINMLNACANSGSL 546
Score = 82.8 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 8/126 (6%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
++ S Y ++ C ++ L GR+VH HI+ ++ PD N ++NMY +CGS+E+AR
Sbjct: 20 QVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQ 79
Query: 100 VSDEMP--QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
V ++ +R V SWNA++ G +A+ L +M+ L PD T+ S L
Sbjct: 80 VWKKLSYMERTV------HSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFL 133
Query: 158 CACTSP 163
+C SP
Sbjct: 134 SSCKSP 139
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T +S+C S +L+ GR++H + + DV + N ILNMY KCGS+E+AR V D+
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDK 186
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
M +++V+ SW I G A + A +F +M ++P+ +T S+L A +SP
Sbjct: 187 MEKKSVV------SWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSP 240
Query: 164 S 164
+
Sbjct: 241 A 241
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 74/138 (53%), Gaps = 8/138 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AF+ Q + P+ TY +++ SS +L+ G+ VH IL++ + D + ++
Sbjct: 211 AFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVK 270
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCGS +D R V +++ R DL +WN +I G+A EA ++++M+ +
Sbjct: 271 MYAKCGSYKDCRQVFEKLVNR------DLIAWNTMIGGLAEGGYWEEASEVYNQMQREGV 324
Query: 147 IPDGLTVRSLLCACTSPS 164
+P+ +T LL AC + +
Sbjct: 325 MPNKITYVILLNACVNSA 342
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 87/143 (60%), Gaps = 12/143 (8%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+L NEAL F +Q N+ +P+ T AC++ C+SL +L+ G+++H HIL + D
Sbjct: 432 SLPNEALNLFVEMQYNS----KPNSITMACILPACASLAALERGQEIHGHILRNGFSLDR 487
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N +++MY KCG+L AR++ D +P++ DL SW +IAG +EA++ F
Sbjct: 488 HVANALVDMYLKCGALGLARLLFDMIPEK------DLVSWTVMIAGYGMHGYGSEAIAAF 541
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
+EMR+ + PD ++ S+L AC+
Sbjct: 542 NEMRNSGIEPDEVSFISILYACS 564
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ C+ L+ G+ VH++I +K Q D+ + N +++MY KCGS+ DA V EM
Sbjct: 354 TITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEM 413
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ D+ SWN +I G + S NEA++LF EM+ P+ +T+ +L AC S
Sbjct: 414 ------QVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSK-PNSITMACILPACAS 464
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 8/121 (6%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T +++ CS+ L LGR +H + + + ++ L N +L+MY K G+L A V +
Sbjct: 252 ATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFET 311
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL--CACT 161
M +R+V+ SW ++IAG A ++ ++ LF EM + PD T+ ++L CACT
Sbjct: 312 MGERSVV------SWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACT 365
Query: 162 S 162
Sbjct: 366 G 366
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY ++ C+ L+S+Q GR++H I S+ + D VL + ++ MY CG L + R + D++
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
V WN ++ G A N E++SLF MR+
Sbjct: 163 ANEKVF------LWNLLMNGYAKIGNFRESLSLFKRMRE 195
>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A L+ CS L++LQ+GR +H + D + +++MYGKC +EDAR + D+M
Sbjct: 234 TLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKM 293
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P+R DL +W +I G A NANE++ LF +MR+ ++PD + + +++ AC
Sbjct: 294 PER------DLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFAC 343
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 11/145 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
NE+LV F+ ++ + P A ++ C+ L ++ R + D+I K Q DV+L
Sbjct: 113 NESLVLFEKMREEG---VVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILG 169
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+++MY KCG +E AR + D M ++NVI SW+A+IA +A+ LF M
Sbjct: 170 TAMIDMYAKCGCVESAREIFDRMEEKNVI------SWSAMIAAYGYHGQGRKALDLFRMM 223
Query: 142 RDRELIPDGLTVRSLLCACTSPSNV 166
++PD +T+ SLL AC+ N+
Sbjct: 224 LSSGMLPDKITLASLLYACSDLKNL 248
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 76/140 (54%), Gaps = 11/140 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
NE+LV FD ++ + P A ++ C+ L ++ R + D+I K Q DV+L
Sbjct: 315 NESLVLFDKMREEG---VVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILG 371
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+++M+ KCG +E AR + D M ++NVI SW+A+IA +A+ LF M
Sbjct: 372 TAMIDMHAKCGCVESAREIFDRMEEKNVI------SWSAMIAAYGYHGQGRKALDLFPMM 425
Query: 142 RDRELIPDGLTVRSLLCACT 161
++P+ +T+ SLL AC+
Sbjct: 426 LRSGILPNKITLVSLLYACS 445
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 8/121 (6%)
Query: 42 RPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP Y +I C L++LQ+GR +H + D + +++MY KC +EDAR
Sbjct: 27 RPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARF 86
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ D+M +R DL +W +I G A ANE++ LF +MR+ ++PD + + +++ A
Sbjct: 87 LFDKMQER------DLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFA 140
Query: 160 C 160
C
Sbjct: 141 C 141
>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 678
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 78/135 (57%), Gaps = 8/135 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A D + + P + A ++ C L +L LGR++H++++ + QP+++L+N +++
Sbjct: 290 AVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALID 349
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG LE AR V D+M R+V+ SW ++I+ +A+SLFS M+D L
Sbjct: 350 MYAKCGCLEYAREVFDQMKFRDVV------SWTSMISAYGMNGKGRDAVSLFSRMQDLGL 403
Query: 147 IPDGLTVRSLLCACT 161
PD + S+L AC+
Sbjct: 404 NPDSIAFVSVLSACS 418
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 79/144 (54%), Gaps = 11/144 (7%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+LY++AL+ F +N I P TY C++ S L +G ++H ++ +V
Sbjct: 116 HLYSDALLVF---KNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNV 172
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N +++MYGKCG L +A V D+MP R+V+ SWN+++AG A ++A+ +
Sbjct: 173 FVGNGLISMYGKCGCLVEACRVLDQMPCRDVV------SWNSLVAGCARNGQFDDALEVC 226
Query: 139 SEMRDRELIPDGLTVRSLLCACTS 162
EM L PD T+ SLL A T+
Sbjct: 227 KEMELLGLKPDAGTMASLLPAVTN 250
>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
Length = 534
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 82/143 (57%), Gaps = 9/143 (6%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+EAL F ++ F + +T ++ C+ L L+LGR+VH H+L K D++L N
Sbjct: 146 DEALRLFKRMKR-AGFLAQQTTLTSVLRACTGLALLELGRQVHVHVL--KYDQDLILNNA 202
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+L+MY KCGSLEDA V M +++VI SW+ +IAG+A + EA+ LF M+
Sbjct: 203 LLDMYCKCGSLEDANAVFVRMVEKDVI------SWSTMIAGLAQNGYSKEALKLFESMKV 256
Query: 144 RELIPDGLTVRSLLCACTSPSNV 166
+ P+ +T+ +L AC+ V
Sbjct: 257 LGIKPNYVTIVGVLFACSHAGLV 279
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 11/136 (8%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A +FL +RP+ TY+ ++ C L +L R++H I+ DV +++ +++
Sbjct: 50 ALEFLVLMLREGVRPNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALID 106
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
+Y + G LE+A V DEM + DL W++IIAG A S+ +EA+ LF M+
Sbjct: 107 VYSRWGELENALRVFDEMV------TGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGF 160
Query: 147 IPDGLTVRSLLCACTS 162
+ T+ S+L ACT
Sbjct: 161 LAQQTTLTSVLRACTG 176
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
L N ++NMY K G L DA+ V D+MP RNV+ SW +I+ ++ ++A+
Sbjct: 2 LINILINMYVKFGLLHDAQDVFDKMPDRNVV------SWTTMISAYSAAKLNDKALEFLV 55
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNV 166
M + P+ T S+L AC N+
Sbjct: 56 LMLREGVRPNMFTYSSVLRACDGLFNL 82
>gi|383152426|gb|AFG58310.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
Length = 151
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 6/123 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
T+ ++ ++A ++ C+SL +L G+ +H+ I+ S Q V ++N +L+MY KCGSLED
Sbjct: 1 TDAKLDSHSFASILPACASLAALDQGKGIHEDIIRSGLQSYVTVENSLLDMYAKCGSLED 60
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
AR V + M R+V+ SWNA+I G A EA+ LF +M+ PD +T +
Sbjct: 61 ARKVFNRMTTRDVV------SWNAMIVGYAIHGCGKEALQLFEQMKHTGTGPDHVTFIGV 114
Query: 157 LCA 159
L A
Sbjct: 115 LSA 117
>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 802
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 64/103 (62%), Gaps = 6/103 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P Y+ LI+ C R L+LG++VH H +S P +V+ N +++MY KCGSL DA+++ D
Sbjct: 63 PRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFD 122
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
E+PQ+ DL SWN +I+G A+ +A LF EM R+
Sbjct: 123 EIPQK------DLCSWNTMISGYANVGRIEQARKLFDEMPHRD 159
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 8/140 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
F ++ +RP+ T+A +++ C+ L + Q+G++VH ++ P + +++
Sbjct: 281 GFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVH 340
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
+Y KCG+ E AR V ++MP+ PDL SW ++I G A + A+ F +
Sbjct: 341 VYSKCGNTETARRVFNQMPR------PDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGT 394
Query: 147 IPDGLTVRSLLCACTSPSNV 166
PD +T +L ACT V
Sbjct: 395 KPDEITFVGVLSACTHAGLV 414
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
Q Y EAL F +Q N + T + ++ +++ SL+ G+++H +++ S + D V
Sbjct: 173 QGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEV 232
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ +L++YGKCGSL +AR + D+M + D+ SW +I E SLF
Sbjct: 233 VWTALLDLYGKCGSLNEARGIFDQMADK------DIVSWTTMIHRCFEDGRKKEGFSLFR 286
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
++ + P+ T +L AC
Sbjct: 287 DLMGSGVRPNEYTFAGVLNACA 308
>gi|302143710|emb|CBI22571.3| unnamed protein product [Vitis vinifera]
Length = 231
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 16/156 (10%)
Query: 11 FTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDH 68
F NS P + A D + + P + A ++ C L +L LGR++H++
Sbjct: 33 FYMNNSMPAE--------AVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEY 84
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
++ + QP+++L+N +++MY KCG LE AR V D+M R+V+ SW ++I+
Sbjct: 85 VVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVV------SWTSMISAYGMN 138
Query: 129 SNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+A+SLFS M+D L PD + S+L AC+
Sbjct: 139 GKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAG 174
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 7/82 (8%)
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGV-ASPSNANEAMSLFSEMRDRE 145
MYGKCG L +A V D+MP R+V+ SWN+++AG + S EA+ +F +M D
Sbjct: 1 MYGKCGCLVEACRVLDQMPCRDVV------SWNSLVAGFYMNNSMPAEAVDIFLQMEDHA 54
Query: 146 LIPDGLTVRSLLCACTSPSNVL 167
+ PD +++ S+L AC S +L
Sbjct: 55 VDPDAISIASVLPACGDLSALL 76
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 84/145 (57%), Gaps = 12/145 (8%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ LY++A+ FD +Q+ +RP Y ++ C+ SL GR VH +++ + +
Sbjct: 650 EGLYSDAIGLFDEMQSKG---VRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSN 706
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ + N ++NMY KCGS+E+AR+V ++P + D+ SWN +I G + S NEA+ L
Sbjct: 707 LPVTNALINMYAKCGSVEEARLVFSKIPVK------DIVSWNTMIGGYSQNSLPNEALEL 760
Query: 138 FSEMRDRELIPDGLTVRSLLCACTS 162
F +M+ ++ PD +T+ +L AC
Sbjct: 761 FLDMQ-KQFKPDDITMACVLPACAG 784
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 8/141 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+L NEAL F L F+ T AC++ C+ L +L GR++H HIL D+ +
Sbjct: 752 SLPNEALELF--LDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHV 809
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+++MY KCG L A+++ D +P++ DL SW +IAG NEA+S F+E
Sbjct: 810 ACALVDMYAKCGLLVLAQLLFDMIPKK------DLISWTVMIAGYGMHGFGNEAISTFNE 863
Query: 141 MRDRELIPDGLTVRSLLCACT 161
MR + PD + +L AC+
Sbjct: 864 MRIAGIEPDESSFSVILNACS 884
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T ++ +++ +L LGR +H + + +VV N +L+MY KCG+L A V +
Sbjct: 572 TTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVK 631
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL--CACT 161
M ++ SW + IA ++A+ LF EM+ + + PD TV S++ CAC+
Sbjct: 632 MGDTTIV------SWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACS 685
Query: 162 S 162
S
Sbjct: 686 S 686
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 6/129 (4%)
Query: 29 AFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY 88
A + L + ++ + ++Y ++ C+ +SL+ G++VH I+S+ D L ++ MY
Sbjct: 355 AIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMY 414
Query: 89 GKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP 148
CG L R + D++ V WN +++ A N E++SLF +M+ ++
Sbjct: 415 VNCGDLVQGRKIFDKIMNDKVF------LWNLLMSEYAKIGNFRESVSLFKKMQKLGVVG 468
Query: 149 DGLTVRSLL 157
+ T +L
Sbjct: 469 NCYTFTCVL 477
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ C++ ++L ++ ++VH ++L + + N ++ Y K G +E A + DE+
Sbjct: 472 TFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDEL 531
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+ PD+ SWN++I G + + +F +M + D T+ S+L A +
Sbjct: 532 SE------PDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIG 585
Query: 165 NV 166
N+
Sbjct: 586 NL 587
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 55/140 (39%), Positives = 83/140 (59%), Gaps = 11/140 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
NEA+ F L++ +RP+ T +++ C+ L L LGR VH++ S + +V +
Sbjct: 124 NEAIDLFMKLEDEA---VRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVC 180
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N +++MY KCG LE+AR V EM +R V+ SW+A+IAG+A A EA+ LFSEM
Sbjct: 181 NTLIDMYVKCGCLENARRVFYEMEERTVV------SWSAMIAGLAMHGQAEEALCLFSEM 234
Query: 142 RDRELIPDGLTVRSLLCACT 161
+ P+G+T LL AC+
Sbjct: 235 IKLGVKPNGVTFIGLLHACS 254
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 27/149 (18%)
Query: 39 FRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
F + P T+ C ++ C L + G+ +H ++ LQN ILN+YG CG + D
Sbjct: 4 FDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGD 63
Query: 97 ARVVSDEMPQRNVIE-------------------------SPDLASWNAIIAGVASPSNA 131
A ++ ++MPQR+ + + ++ SW ++I+G
Sbjct: 64 AMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKP 123
Query: 132 NEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
NEA+ LF ++ D + P+ +TV S+L AC
Sbjct: 124 NEAIDLFMKLEDEAVRPNEVTVVSVLAAC 152
>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
Length = 1097
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/118 (38%), Positives = 69/118 (58%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY ++ C +L+ G+K+H HI+ S Q DV ++ ++NMY KCGS+EDA+++ D+M
Sbjct: 221 TYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKM 280
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+RNVI SW +I G+A EA LF +M+ IP+ T S+L A S
Sbjct: 281 VERNVI------SWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANAS 332
Score = 85.5 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 71/118 (60%), Gaps = 6/118 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+TY ++S C+S +L+ ++VH+H +S+ D+ + N +++MY KCGS++DAR V D+
Sbjct: 726 TTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDD 785
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
M +R+V SW +I G+A EA+ F +M+ P+G + ++L AC+
Sbjct: 786 MVERDVF------SWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACS 837
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 8/116 (6%)
Query: 44 STYACLI--STCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
+TY ++ S +S +L+ + VH H + D+ + N +++MY KCGS++DAR+V
Sbjct: 422 TTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVF 481
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
D M R+VI SWNA++ G+A +EA ++F +M+ L+PD T SLL
Sbjct: 482 DGMCDRDVI------SWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLL 531
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 66/116 (56%), Gaps = 6/116 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+TY L++T S +L+ +VH H + + D + + ++MY +CGS++DAR++ D+
Sbjct: 525 TTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDK 584
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ R+V +WNA+I G A EA+SLF +M+ IPD T ++L A
Sbjct: 585 LSVRHV------TTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSA 634
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/115 (33%), Positives = 66/115 (57%), Gaps = 6/115 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY +++ +S +L+ ++VH H +++ D+ + N +++MY K GS++DARVV D M
Sbjct: 322 TYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGM 381
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+R D+ SW +I G+A EA SLF +M+ +P+ T S+L A
Sbjct: 382 TER------DIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNA 430
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
+Y ++ C + L ++VH I+ S + ++ + N +L +Y +CG L+ AR V D++
Sbjct: 120 SYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKL 179
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
++N+ W +I G A +A +AM ++ +MR P+ +T S+L AC P
Sbjct: 180 LKKNIY------IWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPV 233
Query: 165 NV 166
N+
Sbjct: 234 NL 235
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 8/143 (5%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
Q EAL F +Q F +T+ ++S +L+ ++VH H + D+
Sbjct: 603 QRCGREALSLFLQMQRE-GFIPDATTFINILSANVDEEALEWVKEVHSHA-TDAGLVDLR 660
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ N +++ Y KCG+++ A+ V D+M +RNV +W +I G+A ++A S F
Sbjct: 661 VGNALVHTYSKCGNVKYAKQVFDDMVERNV------TTWTMMIGGLAQHGCGHDAFSHFL 714
Query: 140 EMRDRELIPDGLTVRSLLCACTS 162
+M ++PD T S+L AC S
Sbjct: 715 QMLREGIVPDATTYVSILSACAS 737
>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
Length = 1740
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 72/115 (62%), Gaps = 6/115 (5%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
A ++ C L +L LGR++H++++ + QP+++L+N +++MY KCG LE AR V D+M
Sbjct: 1299 ASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKF 1358
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R+V+ SW ++I+ +A+SLFS M+D L PD + S+L AC+
Sbjct: 1359 RDVV------SWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACS 1407
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 11/143 (7%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+LY++AL+ F +N I P TY C++ S L +G ++H ++ +V
Sbjct: 1105 HLYSDALLVF---KNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNV 1161
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N +++MYGKCG L +A V DZMP R+V+ SWN+++AG A ++A+ +
Sbjct: 1162 FVGNGLISMYGKCGCLVEACRVLDZMPCRDVV------SWNSLVAGCARNGQFDDALEVC 1215
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
EM L PD T+ SLL A T
Sbjct: 1216 KEMELLGLKPDAGTMASLLPAVT 1238
>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 840
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 80/142 (56%), Gaps = 8/142 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L EAL F LQ + TY +++ S L +L LG++VH+H+L S+ VVL
Sbjct: 445 GLDEEALELFRRLQGE-GMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVL 503
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
QN +++MY KCG+L +R + D M +R VI SWNA++ G + E + LF+
Sbjct: 504 QNSLIDMYSKCGNLTYSRRIFDTMYERTVI------SWNAMLVGYSKHGEGREVLKLFTL 557
Query: 141 MRDRELI-PDGLTVRSLLCACT 161
MR+ + PD +T+ ++L C+
Sbjct: 558 MREETKVKPDSVTILAVLSGCS 579
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 61/101 (60%), Gaps = 6/101 (5%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
F ++ Y +++ C + R+ + G++VH H++ ++ P V L+ ++ +Y KC SL DA
Sbjct: 238 GFNMKFENYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDA 297
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
V DEMP+RNV+ SW A+I+ + A++A++LF
Sbjct: 298 HNVFDEMPERNVV------SWTAMISAYSQRGYASQALNLF 332
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A ++++C+S LGR++H I+ + V + + +L+MY K G + +AR V + +
Sbjct: 367 TFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECL 426
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
P+R+V+ S AII+G A EA+ LF ++ + + +T +L A
Sbjct: 427 PERDVV------SCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTA 475
>gi|255584555|ref|XP_002533004.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527215|gb|EEF29379.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 519
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
Q +NE V+ F ST+ C I++ +++ SL +G+ H + S DV
Sbjct: 208 QMGHNEEAVSLFIEMLREGFMPNQSTFPCAITSAANMASLGMGKSFHACAVKSLCTSDVF 267
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ N +++ Y KCGS+ED+ +V +E+P RN + SWNA+I G A +A+ F
Sbjct: 268 VCNSLVSFYAKCGSMEDSLLVFNELPDRNTV------SWNAVICGFAQNGRGEDAVIFFE 321
Query: 140 EMRDRELIPDGLTVRSLLCAC 160
MR L P+ +T+ LLCAC
Sbjct: 322 RMRAAGLRPNSVTLLGLLCAC 342
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 45/183 (24%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSK---- 73
Q+ Y EA+ F + I+P+ T+A +I + + L+++ LG+++H +
Sbjct: 77 QHRYEEAMCLFSRM---LLLNIKPNEFTFATVIHSSTGLKNIYLGKQLHARTMKMGLNTI 133
Query: 74 ---------------------------SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
+P+VV +++ Y K G ++DA + EMP+
Sbjct: 134 VFVGSAMLDFYAKLCSFEEARNAFEDIQKPNVVSYTTLIHGYLKKGKIDDALQLFQEMPE 193
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
RNV+ SWNA++ G + + EA+SLF EM +P+ T CA TS +N+
Sbjct: 194 RNVV------SWNAMVGGFSQMGHNEEAVSLFIEMLREGFMPNQST---FPCAITSAANM 244
Query: 167 LYL 169
L
Sbjct: 245 ASL 247
>gi|255562460|ref|XP_002522236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538489|gb|EEF40094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 640
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 72/124 (58%), Gaps = 9/124 (7%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP T ++ C+ SL++G+ VHD++ + Q D ++ N +++MY KCGS+EDA
Sbjct: 398 VRPDNFTVTAVLHACACSGSLEIGKDVHDYVKENNMQKDRIVCNSLMDMYAKCGSMEDAN 457
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+V EMP + D+ SWN +I G + NE + LF M +EL PDG T+ +L
Sbjct: 458 LVFLEMPNK------DIVSWNTMIGGYSKNGRPNETLHLFVAMV-QELKPDGRTMACILP 510
Query: 159 ACTS 162
AC S
Sbjct: 511 ACAS 514
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
+++ C++ + LGR +H + ++ + N +L+MY KCG L +A V +M +R+
Sbjct: 307 VLAACANSGNFPLGRVLHAFAIKAQLDQRMTFVNTLLDMYSKCGDLNNAIRVFQKMGERS 366
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL--CACTS 162
V+ SW ++IAG A + E + LF EM + PD TV ++L CAC+
Sbjct: 367 VV------SWTSLIAGYAREGLSGEGIRLFHEMEREGVRPDNFTVTAVLHACACSG 416
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
I +TY ++ C+ L SLQ G+KVH I SS D +L ++ MY CG + + RV+
Sbjct: 97 IDSNTYCSILQLCAELNSLQEGKKVHSFISSSGIFVDGLLGTKLVFMYVNCGDIREGRVI 156
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
D++ V WN +++G A E++ LF +M D + + TV +L
Sbjct: 157 FDKIANEKVF------LWNLMLSGYAKIGAFEESVYLFRKMLDLGIQVNSHTVSCIL 207
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 6/80 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T AC++ C+SL +L GR++H +I + D+ + N +++MY KCG+L AR+ D +
Sbjct: 504 TMACILPACASLAALDRGREIHGYIQRNGCFDDLHVANALIDMYAKCGALALARLFFDMI 563
Query: 105 PQRNVIESPDLASWNAIIAG 124
P + DL SW +IAG
Sbjct: 564 PVK------DLISWTVMIAG 577
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
++ T +C++ ++L S++ G VH ++L + N +++ Y K +E A
Sbjct: 197 QVNSHTVSCILKCFAALGSVKEGEWVHGYLLKLGFGSYNTVVNSLISFYFKTRKIEAAYE 256
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V DE+ R D+ SWN++I+G + + + +F EM + D +T+ ++L A
Sbjct: 257 VFDELKNR------DIVSWNSMISGTVANDLPEKGIQVFKEMLYLGVSFDLVTLVNVLAA 310
Query: 160 CTSPSN 165
C + N
Sbjct: 311 CANSGN 316
>gi|357167426|ref|XP_003581157.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61800-like, partial [Brachypodium distachyon]
Length = 357
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ EA++ FD ++ FR A ++S C+ L +L+ GR+VH+++ S+ +P+V L
Sbjct: 91 WEEAVLLFDRMRWE-GFRPDDIVLAAVLSCCAQLGALEKGREVHEYVRQSRPRPNVFLCT 149
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++++Y KCG +E AR V D P+RNV +WNA+I G+A + + F M
Sbjct: 150 GLVDLYAKCGCVEIAREVFDTCPERNVF------TWNALIVGLAMHGHGTVTLKYFDRML 203
Query: 143 DRELIPDGLTVRSLLCACTSPS 164
PDG+T +L C+
Sbjct: 204 AEGFRPDGVTFLGVLIGCSHAG 225
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+ PDVV N +++ Y K G L A MPQR+ + SW ++AG A
Sbjct: 35 VFDEMPAPDVVSYNALMDGYIKAGRLGLATKEFMRMPQRDAV------SWGTVVAGCAKA 88
Query: 129 SNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
EA+ LF MR PD + + ++L C
Sbjct: 89 GRWEEAVLLFDRMRWEGFRPDDIVLAAVLSCCA 121
>gi|356521500|ref|XP_003529393.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15690-like [Glycine max]
Length = 588
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+A L +C +SL+ +K HDH L S + D+ L N ++ MYG C S+ DAR V D MP
Sbjct: 246 FALLFDSCGQSKSLEDAKKAHDHFLQSTFRSDLTLNNKVIEMYGNCKSMTDARRVFDHMP 305
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165
R D+ SW+ ++ G A+ +N +EA+ LF +M + L T+ ++L AC S +
Sbjct: 306 NR------DMDSWHLMMRGYANNTNGDEALQLFEQMNELGLEITSETLLAVLSACASAED 359
Query: 166 V 166
V
Sbjct: 360 V 360
>gi|302759985|ref|XP_002963415.1| hypothetical protein SELMODRAFT_61513 [Selaginella moellendorffii]
gi|300168683|gb|EFJ35286.1| hypothetical protein SELMODRAFT_61513 [Selaginella moellendorffii]
Length = 500
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 79/135 (58%), Gaps = 10/135 (7%)
Query: 28 VAFDFLQNNTNFRIRPSTYACLISTCSS---LRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
+A +F RP + LIST S+ LR L GR +HD I + DV+L +
Sbjct: 169 LALEFYWKMLAGGTRPD-FCTLISTLSAVSCLRLLSHGRAIHDSIQAHGYCSDVILDTAL 227
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MYGKCGSL+DAR+V D+MP+R+++ +WNA+IA + ++A L++EM +
Sbjct: 228 VDMYGKCGSLDDARMVFDKMPERDIV------TWNAMIAAYSQHGQGDKAFELYAEMEPQ 281
Query: 145 ELIPDGLTVRSLLCA 159
P+ +T+ +LL A
Sbjct: 282 GFKPELVTLVNLLTA 296
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 73/141 (51%), Gaps = 7/141 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
LY EAL AF+ ++ R + TYA +I+ C SL+ L GR VH +L S QPD L
Sbjct: 64 GLYREALNAFERMKREGIPRDK-FTYADVITACCSLKDLARGRAVHAGLLVSGIQPDDFL 122
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ +LNMY K GSL +A + MP NV+ +WN +IA + + A+ + +
Sbjct: 123 RVALLNMYAKLGSLGEATRIFHSMPTDNVV------AWNVMIAAFSQSDRPSLALEFYWK 176
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M PD T+ S L A +
Sbjct: 177 MLAGGTRPDFCTLISTLSAVS 197
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
F+ T L++ L L G+ +H I+ K + +V +N I+NMY KCGSL A
Sbjct: 282 GFKPELVTLVNLLTASCCLGDLSRGKAMHSRIIDDKLELTLVAENAIVNMYAKCGSLAQA 341
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
++ D M I D+ SWNAIIAG A ++ L +M + PD T +L
Sbjct: 342 KLAFDGM-----IHPRDVISWNAIIAGNAENGGTETSLQLAKDMVLDGVAPDATTFTCVL 396
Query: 158 CACT 161
C+
Sbjct: 397 LCCS 400
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 9/103 (8%)
Query: 62 GRKVHDHILS-SKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNA 120
GR+VH HI S KS LQN ++ MYGKC S+++A V + ++N S+N
Sbjct: 2 GRRVHSHIASVGKSLLGPCLQNALVQMYGKCRSMKEALAVFSTIARKNTY------SYNI 55
Query: 121 IIAGVASPSNANEAMSLFSEMRDRELIP-DGLTVRSLLCACTS 162
+I+ A EA++ F M+ RE IP D T ++ AC S
Sbjct: 56 LISAAARNGLYREALNAFERMK-REGIPRDKFTYADVITACCS 97
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 81/141 (57%), Gaps = 6/141 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L+ E L +F + + ++ +T ++S C+ L +L LG+ VH + SS + +V +
Sbjct: 372 GLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYV 431
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MY KCG +E+A V M ++ DL SWN +I G+A S +A++LF +
Sbjct: 432 GNALMDMYAKCGIIENAISVFRGM------DTKDLISWNTLIGGLAMHSRGADALNLFFQ 485
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M++ PDG+T +LCACT
Sbjct: 486 MKNAGQKPDGITFIGILCACT 506
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 28/147 (19%)
Query: 28 VAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
V F F Q IRP+ T+ ++ +C + +L G +VH ++ + + + ++
Sbjct: 183 VVFLFFQMK-GMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLI 241
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIE----------SPDLAS---------------WNA 120
+MY G++ DA + EM +RNV+ S DL S WN
Sbjct: 242 DMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNI 301
Query: 121 IIAGVASPSNANEAMSLFSEMRDRELI 147
+++G + EA LF EM +R+++
Sbjct: 302 MVSGYIEGGDMVEARKLFXEMPNRDVM 328
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DV+ N +L Y G++E + +EMP+RN+ SWNA+I G A E +
Sbjct: 326 DVMFWNTVLKGYATNGNVEALEGLFEEMPERNIF------SWNALIGGYAHNGLFFEVLG 379
Query: 137 LFSEM-RDRELIPDGLTVRSLLCACT 161
F M + ++ P+ T+ ++L AC
Sbjct: 380 SFKRMLSESDVPPNDATLVTVLSACA 405
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DVVL N +++ Y + G + +AR + EMP R+V+ WN ++ G A+ N
Sbjct: 295 DVVLWNIMVSGYIEGGDMVEARKLFXEMPNRDVM------FWNTVLKGYATNGNVEALEG 348
Query: 137 LFSEMRDRELI 147
LF EM +R +
Sbjct: 349 LFEEMPERNIF 359
>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Glycine max]
Length = 755
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 77/145 (53%), Gaps = 11/145 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPST--YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
++AL F + F ++PST A +I+ C+ L S LG + +IL + DV Q
Sbjct: 343 DKALAVF---RQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGYILRQELPLDVATQ 399
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++ MY KCG L+ + +V D M +R DL SWNA++ G A EA+ LF+EM
Sbjct: 400 NSLVTMYAKCGHLDQSSIVFDMMNRR------DLVSWNAMVTGYAQNGYVCEALFLFNEM 453
Query: 142 RDRELIPDGLTVRSLLCACTSPSNV 166
R PD +T+ SLL C S +
Sbjct: 454 RSDNQTPDSITIVSLLQGCASTGQL 478
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ CS L LG +H IL S D + + ++N Y K G + AR V D M
Sbjct: 63 TFPSLLKACSFLNLFSLGLTLHQRILVSGLSLDAYIASSLINFYAKFGFADVARKVFDYM 122
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P+RNV+ W II + EA SLF EMR + + P +TV SLL + +
Sbjct: 123 PERNVVP------WTTIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTVLSLLFGVSELA 176
Query: 165 NV 166
+V
Sbjct: 177 HV 178
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 75/143 (52%), Gaps = 8/143 (5%)
Query: 20 QNLYN-EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
QN Y EAL F+ ++++ N T L+ C+S L LG+ +H ++ + +P +
Sbjct: 439 QNGYVCEALFLFNEMRSD-NQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCI 497
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
++ +++MY KCG L+ A+ ++MP S DL SW+AII G A+ +
Sbjct: 498 LVDTSLVDMYCKCGDLDTAQRCFNQMP------SHDLVSWSAIIVGYGYHGKGEAALRFY 551
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
S+ + + P+ + S+L +C+
Sbjct: 552 SKFLESGMKPNHVIFLSVLSSCS 574
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 65/123 (52%), Gaps = 6/123 (4%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
F P T+ ++S +S L+LGR +H IL + D ++ ++ +Y K G ++
Sbjct: 255 GFEAGPQTFGSVLSVAASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGKID-- 312
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
++ M +R+ D+ W A+I+G+ +A++A+++F +M + P T+ S++
Sbjct: 313 --IAFRMFERS--SDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVI 368
Query: 158 CAC 160
AC
Sbjct: 369 TAC 371
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 14/120 (11%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
EA FD ++ I+PS T L+ S L +Q +H + D+ L N
Sbjct: 145 EAFSLFDEMRRQG---IQPSSVTVLSLLFGVSELAHVQC---LHGCAILYGFMSDINLSN 198
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+LN+YGKCG++E +R + D M R DL SWN++I+ A N E + L MR
Sbjct: 199 SMLNVYGKCGNIEYSRKLFDYMDHR------DLVSWNSLISAYAQIGNICEVLLLLKTMR 252
>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
Length = 659
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 83/150 (55%), Gaps = 9/150 (6%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y++ L+ F + N FR TY C++ CS +L+ G +H +L ++ + N
Sbjct: 100 YDDGLLVFREMVNG-GFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGN 158
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++ MYGKCG L +AR V DEM ++V+ SWN+++AG A ++A+ + EM
Sbjct: 159 GLIAMYGKCGCLFEARRVFDEMIWKDVV------SWNSMVAGYAHNMRFDDALEICREME 212
Query: 143 DRELIPDGLTVRSLL--CACTSPSNVLYLD 170
D PDG T+ SL+ A TS NVLY++
Sbjct: 213 DYGQKPDGCTMASLMPAVANTSSENVLYVE 242
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 16/155 (10%)
Query: 9 LRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVH 66
+R NS P Q A D R+ P T+A ++ C L +L LGR++H
Sbjct: 260 IRVYMKNSLPTQ--------AVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIH 311
Query: 67 DHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVA 126
+++ K P+++L+N +++MY +CG L+DA+ V D M R D+ASW ++I+
Sbjct: 312 EYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFR------DVASWTSLISAYG 365
Query: 127 SPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
A++LF+EM + PD + ++L AC+
Sbjct: 366 MTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACS 400
Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
+K+H I S + L ++ Y CG R V DEM RNV+ +N +I
Sbjct: 38 KKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVV------FYNVMI 91
Query: 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
+ ++ + +F EM + PD T +L AC+ N+ Y
Sbjct: 92 RSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRY 137
>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 81/141 (57%), Gaps = 6/141 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L+ E L +F + + ++ +T ++S C+ L +L LG+ VH + SS + +V +
Sbjct: 151 GLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYV 210
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MY KCG +E+A V M ++ DL SWN +I G+A S +A++LF +
Sbjct: 211 GNALMDMYAKCGIIENAISVFRGM------DTKDLISWNTLIGGLAMHSRGADALNLFFQ 264
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M++ PDG+T +LCACT
Sbjct: 265 MKNAGQKPDGITFIGILCACT 285
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DV+ N +L Y G++E + +EMP+RN+ SWNA+I G A E +
Sbjct: 105 DVMFWNTVLKGYATNGNVEALEGLFEEMPERNIF------SWNALIGGYAHNGLFFEVLG 158
Query: 137 LFSEM-RDRELIPDGLTVRSLLCACT 161
F M + ++ P+ T+ ++L AC
Sbjct: 159 SFKRMLSESDVPPNDATLVTVLSACA 184
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+ DVVL N +++ Y + G + +AR + EMP R+V+ WN ++ G A+ N
Sbjct: 72 ERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVM------FWNTVLKGYATNGNVEAL 125
Query: 135 MSLFSEMRDRELI 147
LF EM +R +
Sbjct: 126 EGLFEEMPERNIF 138
>gi|302769602|ref|XP_002968220.1| hypothetical protein SELMODRAFT_89434 [Selaginella moellendorffii]
gi|300163864|gb|EFJ30474.1| hypothetical protein SELMODRAFT_89434 [Selaginella moellendorffii]
Length = 323
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 84/140 (60%), Gaps = 10/140 (7%)
Query: 26 ALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
AL F+ + ++T +RPS TY ++ CS +L GR++H+HIL+SK++ ++ + N
Sbjct: 95 ALELFETMVSSTTSSLRPSSVTYVAVLGACSDSGALTAGRRIHEHILASKAEWELPVGNA 154
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS--PSNANEAMSLFSEM 141
+++MYGKCGS+EDAR+V M +++ L SWN+++A +A EA L EM
Sbjct: 155 LISMYGKCGSVEDARLVFTAMREKS------LFSWNSMLAAYTQNHQGSAAEAFDLGREM 208
Query: 142 RDRELIPDGLTVRSLLCACT 161
+ P+ T S+L AC+
Sbjct: 209 VLHGIKPNEATFVSILYACS 228
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
+I CS+L L G ++H I+ + D VL ++N++GKCG+L AR + D MP ++
Sbjct: 16 VIGACSTLEDLAEGERLHQRIVDIYHKQDRVLGTALINLHGKCGNLAQARSLLDSMPSKD 75
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEM---RDRELIPDGLTVRSLLCACT 161
V+ SWN +I A ++ A+ LF M L P +T ++L AC+
Sbjct: 76 VV------SWNTMITSYARYGHSKAALELFETMVSSTTSSLRPSSVTYVAVLGACS 125
>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 908
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 46/118 (38%), Positives = 69/118 (58%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY ++ C S SL+ G+K+H HI+ S Q DV ++ ++NMY KCGS++DA+++ D+M
Sbjct: 32 TYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKM 91
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+RNVI SW +I G+A EA F +M+ IP+ T S+L A S
Sbjct: 92 VERNVI------SWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANAS 143
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 71/118 (60%), Gaps = 6/118 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+TY ++S C+S +L+ ++VH H +++ D+ + N +++MY KCGS++DAR V D+
Sbjct: 537 TTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDD 596
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
M +R D+ SW +I G+A +A+ LF +M+ P+G + ++L AC+
Sbjct: 597 MLER------DVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACS 648
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 8/116 (6%)
Query: 44 STYACLI--STCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
+TY ++ S +S +L+ ++VH H + D+ + N +++MY KCGS++DAR+V
Sbjct: 233 TTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVF 292
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
D M R+VI SWNA+I G+A +EA ++F +M+ +PD T SLL
Sbjct: 293 DGMCDRDVI------SWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLL 342
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 7/136 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+EA F +Q F +TY L++T S + + ++VH H + D+ + +
Sbjct: 317 HEAFTIFLKMQQE-GFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSA 375
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++MY +CGS++DA+++ D++ RNV +WNA+I GVA EA+SLF +MR
Sbjct: 376 FVHMYIRCGSIDDAQLIFDKLAVRNV------TTWNAMIGGVAQQKCGREALSLFLQMRR 429
Query: 144 RELIPDGLTVRSLLCA 159
PD T ++L A
Sbjct: 430 EGFFPDATTFVNILSA 445
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 6/115 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY +++ +S +L+ ++VH H +++ D+ + N +++MY K GS++DARVV D M
Sbjct: 133 TYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGM 192
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+R D+ SW +I G+A EA SLF +M +P+ T S+L A
Sbjct: 193 VER------DIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNA 241
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 70/132 (53%), Gaps = 8/132 (6%)
Query: 32 FLQ-NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90
FLQ F +T+ ++S +L+ ++VH + + + D+ + N +++MY K
Sbjct: 424 FLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDA-GLVDLRVGNALVHMYAK 482
Query: 91 CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDG 150
CG+ A+ V D+M +RNV +W +I+G+A +EA SLF +M ++PD
Sbjct: 483 CGNTMYAKQVFDDMVERNV------TTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDA 536
Query: 151 LTVRSLLCACTS 162
T S+L AC S
Sbjct: 537 TTYVSILSACAS 548
>gi|15220808|ref|NP_173207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75175206|sp|Q9LNP2.1|PPR47_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g17630
gi|8778465|gb|AAF79473.1|AC022492_17 F1L3.33 [Arabidopsis thaliana]
gi|332191495|gb|AEE29616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 731
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T C++S C+ L +L LGR++H H++ + ++++QN ++NMY KCG L + +V +
Sbjct: 436 TICCILSICAELPALNLGREIHGHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVFE-- 493
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
I DL SWN+II G A +A+S+F M PDG+ + ++L AC+
Sbjct: 494 ----AIRDKDLISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAG 549
Query: 165 NV 166
V
Sbjct: 550 LV 551
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ + L F ++ + N + A S C+ L +L + KVH +++ + + +N
Sbjct: 275 FEDVLKYFHLMRMSGN-AVSGEALAVFFSVCAELEALSIAEKVHGYVIKGGFEEYLPSRN 333
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++++YGK G ++DA + + I + + SWN++I +EA+SLFSE+
Sbjct: 334 ALIHVYGKQGKVKDAEHLFRQ------IRNKGIESWNSLITSFVDAGKLDEALSLFSELE 387
Query: 143 D 143
+
Sbjct: 388 E 388
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ C L L R H ++ + ++ + N +L +Y K G + DA + EMP RN
Sbjct: 164 ILRACRYLGRFGLCRAFHTQVIQIGLKENLHVVNELLTLYPKAGRMGDAYNLFVEMPVRN 223
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ SWN +I G + + A+ +F M+ E PD +T S+L +C S
Sbjct: 224 RM------SWNVMIKGFSQEYDCESAVKIFEWMQREEFKPDEVTWTSVL-SCHS 270
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 63 RKVHDHILSSKSQPDVVLQNY-----ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
R+VH +L S D + ++ ++++Y + G L DAR V + + +++ DL
Sbjct: 73 RQVHAQVLLS----DFIFRSGSLAANLISVYARLGLLLDARNVFETV---SLVLLSDLRL 125
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
WN+I+ S A+ L+ MR R L DG + +L AC
Sbjct: 126 WNSILKANVSHGLYENALELYRGMRQRGLTGDGYILPLILRAC 168
>gi|302776814|ref|XP_002971551.1| hypothetical protein SELMODRAFT_61534 [Selaginella moellendorffii]
gi|300160683|gb|EFJ27300.1| hypothetical protein SELMODRAFT_61534 [Selaginella moellendorffii]
Length = 505
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 10/135 (7%)
Query: 28 VAFDFLQNNTNFRIRPSTYACLISTCSS---LRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
+A +F RP + LIST S+ LR L GR +HD I + DV+L +
Sbjct: 174 LALEFYWKMLAGGTRPD-FCTLISTLSAVSCLRRLSHGRAIHDSIQAHGYCSDVILDTAL 232
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MYGKCGSL+DAR+V D+MP R+++ +WNA+IA + ++A L++EM +
Sbjct: 233 VDMYGKCGSLDDARMVFDKMPARDIV------TWNAMIAAYSQHGQGDKAFELYAEMEPQ 286
Query: 145 ELIPDGLTVRSLLCA 159
P+ +T+ +LL A
Sbjct: 287 GFKPELVTLVNLLTA 301
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 73/141 (51%), Gaps = 7/141 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
LY EAL AF+ ++ R + TYA +I+ C SL+ L GR VH +L S QPD L
Sbjct: 69 GLYREALDAFERMKREGIPRDK-FTYADVITACCSLKDLARGRAVHAGLLVSGIQPDDFL 127
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ +LNMY K GSL +A + MP NV+ +WN +IA + + A+ + +
Sbjct: 128 RVALLNMYAKLGSLGEATRIFHSMPTDNVV------AWNVMIAAFSQSDQPSLALEFYWK 181
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M PD T+ S L A +
Sbjct: 182 MLAGGTRPDFCTLISTLSAVS 202
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
F+ T L++ L L G+ +H I+ K + +V +N I+NMY KCGSL A
Sbjct: 287 GFKPELVTLVNLLTASCCLGDLSRGKAIHSRIIDDKLELTLVAENAIVNMYAKCGSLAQA 346
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
++ D M I D+ SWNAIIAG A ++ L +M + PD T +L
Sbjct: 347 KLAFDGM-----IHPRDVISWNAIIAGNAENGGTETSLQLAKDMVHDGVAPDATTFTCVL 401
Query: 158 CACT 161
C+
Sbjct: 402 LCCS 405
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 57 RSLQLGRKVHDHILS-SKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDL 115
+SL GR+VH HI + KS LQN ++ MYGKCGS+++A V + ++N
Sbjct: 2 KSLLHGRRVHSHIATVGKSLLGPCLQNALVQMYGKCGSMKEALAVFSTIARKNTY----- 56
Query: 116 ASWNAIIAGVASPSNANEAMSLFSEMRDRELIP-DGLTVRSLLCACTS 162
S+N +I+ A EA+ F M+ RE IP D T ++ AC S
Sbjct: 57 -SYNILISAAARNGLYREALDAFERMK-REGIPRDKFTYADVITACCS 102
>gi|10178273|emb|CAC08331.1| putative protein [Arabidopsis thaliana]
Length = 1280
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
YN+AL FD + + + T +I C+ L +L G+ VH +IL V+LQ
Sbjct: 967 YNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQT 1026
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCGS+ DA V R ++ D WNAII G+AS E++ LF +MR
Sbjct: 1027 SLIDMYAKCGSIGDAWSVF----YRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMR 1082
Query: 143 DRELIPDGLTVRSLLCACT 161
+ ++ PD +T LL AC+
Sbjct: 1083 ESKIDPDEITFLCLLAACS 1101
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY L+ + S L + +LG +H ++ S + D+ + N +++MYG AR + DEM
Sbjct: 856 TYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEM 915
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
P +N L +WN+I+ A + A +F EM +R+++
Sbjct: 916 PHKN------LVTWNSILDAYAKSGDVVSARLVFDEMSERDVV 952
>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 905
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 77/143 (53%), Gaps = 9/143 (6%)
Query: 28 VAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
A+ Q N + P T+A ++S C + +L+LG+++H I S Q DV L N ++
Sbjct: 515 TAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALI 574
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
NMY +CGSL+DAR V + R+V+ SW A+I G A +A+ LF +M++
Sbjct: 575 NMYIRCGSLQDARNVFHSLQHRDVM------SWTAMIGGCADQGEDMKAIELFWQMQNEG 628
Query: 146 LI-PDGLTVRSLLCACTSPSNVL 167
PDG T S+L AC VL
Sbjct: 629 FRPPDGSTFTSILSACNHAGLVL 651
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+TY L+ C+ R L +++H ++ + PD+ L N ++NMY KC S+ DA V E
Sbjct: 28 ATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKE 87
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
MP+R+VI SWN++I+ A +A LF EM++ IP+ +T S+L AC SP
Sbjct: 88 MPRRDVI------SWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSP 141
Query: 164 SNV 166
+ +
Sbjct: 142 AEL 144
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+TY +++ CS+ ++L+ G+ +H HI DV + N +++MY +CG L AR +
Sbjct: 331 TTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYT 390
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
MP+R DL SWNAIIAG A + EAM L+ +M+ + P +T LL AC +
Sbjct: 391 MPKR------DLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANS 444
Query: 164 S 164
S
Sbjct: 445 S 445
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 79/142 (55%), Gaps = 11/142 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
EA+ + +Q+ ++P T+ L+S C++ + G+ +H+ IL S + + L
Sbjct: 413 GEAMRLYKQMQSEG---VKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLA 469
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++NMY +CGSL +A+ V + R+VI SWN++IAG A + A LF EM
Sbjct: 470 NALMNMYRRCGSLMEAQNVFEGTQARDVI------SWNSMIAGHAQHGSYETAYKLFQEM 523
Query: 142 RDRELIPDGLTVRSLLCACTSP 163
++ EL PD +T S+L C +P
Sbjct: 524 QNEELEPDNITFASVLSGCKNP 545
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 75/145 (51%), Gaps = 7/145 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
Q +A F+ +QN F TY +++ C S L+ G+K+H I+ + Q D
Sbjct: 106 QGFKKKAFQLFEEMQN-AGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPR 164
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+QN +L+MYGKCG L AR V + R+V+ S+N ++ A + E + LF
Sbjct: 165 VQNSLLSMYGKCGDLPRARQVFAGISPRDVV------SYNTMLGLYAQKAYVKECLGLFG 218
Query: 140 EMRDRELIPDGLTVRSLLCACTSPS 164
+M + PD +T +LL A T+PS
Sbjct: 219 QMSSEGISPDKVTYINLLDAFTTPS 243
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY L+ ++ L G+++H + D+ + ++ M +CG ++ A+ +
Sbjct: 231 TYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGI 290
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
R+V+ +NA+IA +A + EA + MR + + T S+L AC++
Sbjct: 291 ADRDVV------VYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACST 342
>gi|255546694|ref|XP_002514406.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546503|gb|EEF48002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 436
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 77/141 (54%), Gaps = 9/141 (6%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+EAL F ++ N F S ++ C+ L L+LGR+VH H+ K D+VL N
Sbjct: 238 DEALNLFKSMKRN-GFPANQSALTSVLRACTGLALLELGRQVHVHVF--KHDQDLVLNNA 294
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+L+MY KCGSLEDA V M +++VI SW+ +IAG A + EA+ LF M+
Sbjct: 295 LLDMYCKCGSLEDANYVFTRMVEKDVI------SWSTMIAGFAQNGYSREALKLFESMKV 348
Query: 144 RELIPDGLTVRSLLCACTSPS 164
P+ +T+ +L AC+
Sbjct: 349 SGTKPNYITILGVLFACSHAG 369
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY+ LI C + +++ G++V+ H+ S+ QP++ L N +LNMY K L++A + D+M
Sbjct: 59 TYSELIKCCLARNAIEQGKQVYKHLSSNGYQPNIFLINMLLNMYVKFNLLDEALTLFDQM 118
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P+RNV+ SW +I+ ++ ++A+ M + P+ T S+L AC
Sbjct: 119 PERNVV------SWTTMISAFSNAKLNDKALEFLICMLREGVKPNVYTYSSILRACDGVY 172
Query: 165 NV 166
N+
Sbjct: 173 NL 174
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 70/124 (56%), Gaps = 11/124 (8%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
++P+ TY+ ++ C + +L R++H +I+ S DV +++ ++++Y K G E+A
Sbjct: 154 VKPNVYTYSSILRACDGVYNL---RQLHGNIIKSGLDSDVYVRSALIDIYSKWGESENAL 210
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V +EM + DL WN+IIAG A ++ +EA++LF M+ + + S+L
Sbjct: 211 YVFNEMV------TGDLIVWNSIIAGFAQNNDGDEALNLFKSMKRNGFPANQSALTSVLR 264
Query: 159 ACTS 162
ACT
Sbjct: 265 ACTG 268
>gi|255571614|ref|XP_002526753.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533942|gb|EEF35667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 818
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 71/118 (60%), Gaps = 7/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TYA ++++ S L +L G++VH H+L + VVLQN +++MY KCGSL AR + D M
Sbjct: 679 TYASVLTSLSGLAALDHGKQVHSHVLRRELPFYVVLQNSMIDMYSKCGSLNYARRIFDSM 738
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR-DRELIPDGLTVRSLLCACT 161
P+R VI SWNA++ G E + LF MR + ++ PD +T+ ++L C+
Sbjct: 739 PERTVI------SWNAMLVGYGKHGMGREVVELFKLMRTENKVKPDSVTILAVLSGCS 790
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y L++ C + ++++ G++VH HI+ + P V L+ ++ Y KC L DAR V DEM
Sbjct: 478 YNTLLNECVNNKAIREGQRVHAHIIKTYYLPSVYLRTRLIVFYTKCDLLMDARHVFDEMS 537
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165
+RNV+ SW A+I+G + A E + LF M ++ P+ T+ ++L +CT S
Sbjct: 538 ERNVV------SWTAMISGYSRRGFAFETLHLFVRMLRSDIEPNEFTLATVLTSCTDASG 591
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 9/126 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++++C+ +LGR++H I+ + + + +L+MY K G + +AR+V + +
Sbjct: 578 TLATVLTSCTDASGSELGRQIHSLIIKCNYDSHIFVGSSLLDMYAKAGRILEARMVFESL 637
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P+R+V+ S AII+G A EA+ LF + L + +T S+L TS S
Sbjct: 638 PERDVV------SCTAIISGYAQLGLDEEALELFRRLEREGLSSNCVTYASVL---TSLS 688
Query: 165 NVLYLD 170
+ LD
Sbjct: 689 GLAALD 694
>gi|168041820|ref|XP_001773388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675264|gb|EDQ61761.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 748
Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 48/145 (33%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
N + +A+ ++ ++ N ++P+ T+ ++ C+S +L+ GRK+HDHI + Q D+
Sbjct: 85 NHFEDAIEVYNKMRQNG---VQPNEITFFNILKACTSPMALKWGRKIHDHIRHAGFQSDL 141
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
L N +++MY +CGS++DAR+V + M R++I +WN +I + +EA SLF
Sbjct: 142 RLGNALIHMYARCGSMDDARLVFNGMVDRDII------TWNVMIGRLVQHGRGHEAFSLF 195
Query: 139 SEMRDRELIPDGLTVRSLL--CACT 161
+M+ +PD T S+L ACT
Sbjct: 196 LQMQREGFVPDTTTYLSMLNANACT 220
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 44/119 (36%), Positives = 73/119 (61%), Gaps = 6/119 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+TY +++ +S +L+ ++VH H ++++ + + N +++MY KCGS+E+AR+V D
Sbjct: 411 TTYLSILNGKASTGALEWVKEVHTHAVNAELDSHLRVGNALIHMYAKCGSIENARLVFDR 470
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
M R++I SWNA+I G+A + EA S F EM+ IPD T+ S+L AC S
Sbjct: 471 MEDRDII------SWNAMIGGLAQNGHGREAFSHFLEMQREGFIPDAATLVSILNACAS 523
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 69/114 (60%), Gaps = 6/114 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T +++ C+S R+L ++VH H L + + D+ + + +++ Y KCG ++DAR+V +
Sbjct: 512 ATLVSILNACASTRALDRVKEVHSHALEAGLESDLRVGSALVHTYAKCGRIDDARLVFEG 571
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
M R++I +WN +I G+A +EA SLF +M+D +PD +T S+L
Sbjct: 572 MASRDII------TWNVMIGGLAQHGREHEAFSLFLQMQDVGFVPDAITYLSIL 619
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 45/134 (33%), Positives = 76/134 (56%), Gaps = 10/134 (7%)
Query: 32 FLQ-NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90
FLQ F +TY +++ + +L ++VH H L + + DV + +++MY +
Sbjct: 195 FLQMQREGFVPDTTTYLSMLNANACTGALGWVKEVHSHALRAGLESDVRVGTALVHMYAR 254
Query: 91 CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDG 150
GS++DAR+V D+M +RN+I +WN++I G+A EA SLF +M+ L+PD
Sbjct: 255 SGSIKDARLVFDKMTERNII------TWNSMIGGLAQHGCGLEAFSLFRQMQREGLVPDA 308
Query: 151 LTVRSLL---CACT 161
+T ++L CA T
Sbjct: 309 ITYVNILNNACAST 322
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L + C+S +LQ RKVHD DV + N +++MY KCGS++DAR V M R+
Sbjct: 315 LNNACASTGALQWVRKVHDDAAKVGLDFDVRVGNALVHMYAKCGSMDDARRVFYGMVDRD 374
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
V+ SW +I G+A EA SLF +M+ +P+ T S+L
Sbjct: 375 VV------SWTVMIGGLAQHGFGREAFSLFLQMQREGFVPNLTTYLSIL 417
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 68/119 (57%), Gaps = 6/119 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY ++ + L L ++VH+ I+ S+ + + N ++++Y +CG L++ R V D +
Sbjct: 7 TYVDILQKVFKHKDLVLAKQVHECIIKSEMEQHPYVANKLMSIYIRCGRLQNTREVFDTL 66
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
++NV +W +I G A ++ +A+ ++++MR + P+ +T ++L ACTSP
Sbjct: 67 VEKNVF------NWTIMIGGYAENNHFEDAIEVYNKMRQNGVQPNEITFFNILKACTSP 119
>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
Length = 752
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 76/131 (58%), Gaps = 8/131 (6%)
Query: 33 LQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90
L N +R +P ST+AC +S+C+ L +LQ+G+++H ++ S D+ + N ++ MY K
Sbjct: 204 LLNQMPYRNKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAK 263
Query: 91 CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDG 150
CGS+ A ++ + I+ D+ SWN++IA A N EA+ LF +M + PD
Sbjct: 264 CGSISSAELLFKD------IDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDE 317
Query: 151 LTVRSLLCACT 161
+T +L AC+
Sbjct: 318 VTFVGILSACS 328
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
P+ V +L + + G + +AR + D+MP RNV+ +WNA+IA + +EA+
Sbjct: 118 PNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVV------AWNAMIAAYVQNCHVDEAI 171
Query: 136 SLFSEMRDRELI 147
SLF EM ++ I
Sbjct: 172 SLFMEMPEKNSI 183
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++ Y K ++AR + D MP + DL SWN+++ G + F EM
Sbjct: 31 NAMVAGYAKNRQFDEARRLFDAMPAK------DLVSWNSMLTGYTRNGEMRLGLQFFEEM 84
Query: 142 RDRELIPDGLTV 153
+R+++ L V
Sbjct: 85 AERDVVSWNLMV 96
>gi|361066821|gb|AEW07722.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
Length = 151
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 72/123 (58%), Gaps = 6/123 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
T+ ++ T+A ++ C++L +L G+ +H+ I+ S Q V ++N +++MY KCGSLED
Sbjct: 1 TDAKLDSHTFASILPACANLAALDQGKGIHEDIIRSGLQSYVTVENSLVDMYAKCGSLED 60
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
AR V + M R+V+ SWNA+I G A EA+ LF +M+ PD +T +
Sbjct: 61 ARKVFNRMTTRDVV------SWNAMIVGYAIHGCGKEALQLFEQMKHTGTGPDHVTFIGV 114
Query: 157 LCA 159
L A
Sbjct: 115 LSA 117
>gi|168004577|ref|XP_001754988.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694092|gb|EDQ80442.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 437
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 68/118 (57%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++S C+SLRSL+ G+KVH ++ + D +L N +++MY KCG++ + EM
Sbjct: 78 TFTTILSVCASLRSLEKGKKVHCDMIKAGIHSDRILGNTLIDMYAKCGNIRQGHTMFTEM 137
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
R+V+ +WN IIAG A +EA LF MR+ L PD +T +L C+S
Sbjct: 138 KDRDVV------TWNIIIAGAARNGYFDEAFELFEAMREAGLKPDKVTYVCVLNVCSS 189
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y ++ C+++ L+ G++VHDH++ S D +L + +++MY KCG + A + + M
Sbjct: 278 YTTVLHVCATMGDLEKGKQVHDHMVKSGIATDQILDSTLIDMYAKCGRTDIAHQLLEIMD 337
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165
+R+V+ S+ A+I G EA+ FS M+ ++P+ +T +L ACT +
Sbjct: 338 ERDVV------SYTALIVGHVRQGRFQEALQTFSSMQRDGVLPNTVTFVGVLKACTGLGS 391
Query: 166 VL 167
++
Sbjct: 392 LV 393
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 11/140 (7%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AF+ + ++P TY C+++ CSSL GR +H +I+ + + D+ + +LN
Sbjct: 161 AFELFEAMREAGLKPDKVTYVCVLNVCSSLEQ---GRILHSYIIEAGLELDLWVGTALLN 217
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY C SLEDA + +++P+RN L +W ++IA A +A + +M +
Sbjct: 218 MYSNCRSLEDALQIFEKLPERN------LVTWTSVIAAYAQAGIPEKAWIFYEKMLKEGI 271
Query: 147 IPDGLTVRSLLCACTSPSNV 166
+ D ++L C + ++
Sbjct: 272 VADKFAYTTVLHVCATMGDL 291
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
P + N +LNMY KCGS+ DAR V D M +R D+ +W ++ G A + EA
Sbjct: 8 PSTFVLNALLNMYMKCGSITDARQVFDNMRER------DMFTWTMMLTGYARLGHLEEAY 61
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACTS 162
++ +M + L DG+T ++L C S
Sbjct: 62 RVYEQMLEERLPLDGVTFTTILSVCAS 88
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPST--YACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
Q + EAL F +Q + + P+T + ++ C+ L SL GR++H I+ + D
Sbjct: 354 QGRFQEALQTFSSMQRDG---VLPNTVTFVGVLKACTGLGSLVEGRRIHASIIKAGLAQD 410
Query: 78 VVLQNYILNMYGKCGSLEDARVVS 101
L+ + +MY KC S DA+ V
Sbjct: 411 SSLKYALADMYAKCSSWTDAQEVG 434
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 81/150 (54%), Gaps = 17/150 (11%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILS------SKSQP 76
EAL F L+ + I P+ T+ L+S C++L L LGR+ H H+L S ++
Sbjct: 364 EALRLFRLLKRES---IWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAES 420
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D+ + N +++MY KCGS+ED V ++M +R D SWNAII G A EA+
Sbjct: 421 DIFVGNSLIDMYMKCGSIEDGSRVFEKMKER------DCVSWNAIIVGYAQNGYGAEALQ 474
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+F +M PD +T+ +LCAC+ V
Sbjct: 475 IFRKMLVCGEKPDHVTMIGVLCACSHAGLV 504
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 74/140 (52%), Gaps = 7/140 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ E+L F + +F + ++ +S C+ L L +G +VH + S+ DV + +
Sbjct: 128 FEESLEYF-VKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGS 186
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCGS+ A V M +RN++ +WN++I A+EA+ +F M
Sbjct: 187 ALIDMYSKCGSVACAEEVFSGMIERNLV------TWNSLITCYEQNGPASEALEVFVRMM 240
Query: 143 DRELIPDGLTVRSLLCACTS 162
D L PD +T+ S++ AC S
Sbjct: 241 DSGLEPDEVTLASVVSACAS 260
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 26/149 (17%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSS-KSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T A ++S C+SL +L+ G ++H ++ + K + D+VL N +++MY KC + +AR V D
Sbjct: 250 TLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDR 309
Query: 104 MPQRNVIESP-------------------------DLASWNAIIAGVASPSNANEAMSLF 138
M RNV+ ++ SWNA+IAG EA+ LF
Sbjct: 310 MSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLF 369
Query: 139 SEMRDRELIPDGLTVRSLLCACTSPSNVL 167
++ + P T +LL AC + +++L
Sbjct: 370 RLLKRESIWPTHYTFGNLLSACANLADLL 398
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 25/144 (17%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
S +A L+ +C RS + R VH IL ++ ++ +QN ++++YGKC L+DAR + D
Sbjct: 16 SPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDR 75
Query: 104 MPQRNV-------------------------IESPDLASWNAIIAGVASPSNANEAMSLF 138
MPQRN + PD SWN++++G A E++ F
Sbjct: 76 MPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYF 135
Query: 139 SEMRDRELIPDGLTVRSLLCACTS 162
+M + + + + S L AC
Sbjct: 136 VKMHREDFLLNEYSFGSALSACAG 159
>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 716
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 75/120 (62%), Gaps = 6/120 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY+ ++ C+SL +++LG ++H L + DVV+ N +++MY KCGS+++AR+V D +
Sbjct: 346 TYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDML 405
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+R+ I SWNA+I+G + EA+ F M++ E +P+ LT S+L AC++
Sbjct: 406 SERDEI------SWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAG 459
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 71/118 (60%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A ++ +C+S+ +LQLG++VH H+L +V + N ++++Y KCG L+++ + E+
Sbjct: 245 TFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMEL 304
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P RN + +WN +I G + ++A+SL+ M + ++ +T S+L AC S
Sbjct: 305 PNRNEV------TWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACAS 356
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A ++ C L + +G+ VH +L + + D+ + +L++Y K G D V +EM
Sbjct: 144 TFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEM 203
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P+ +VI W+ +I+ A + + EA+ LF +MR ++P+ T S+L +C S
Sbjct: 204 PKHDVI------PWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIE 257
Query: 165 NV 166
N+
Sbjct: 258 NL 259
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 6/123 (4%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
+ P + ++ S+ +L +H I + + + +++ Y CGS+ AR
Sbjct: 38 ELNPFVFTTILKLLVSVECAELAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQ 97
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
D I D+ SW ++A A +++ LF+EMR P+ T +L A
Sbjct: 98 AFD------AIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKA 151
Query: 160 CTS 162
C
Sbjct: 152 CIG 154
>gi|125555495|gb|EAZ01101.1| hypothetical protein OsI_23130 [Oryza sativa Indica Group]
Length = 766
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 70/128 (54%), Gaps = 13/128 (10%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHIL-SSKSQPDV------VLQNYILNMYGKCGSLEDAR 98
YA L+S CS LRSL GR+VH H++ SS S PD VL N+++ MYG+C + + AR
Sbjct: 47 YAALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSAR 106
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V DEMP RN + SW ++IA A +A+ LFS M D + S +
Sbjct: 107 QVFDEMPARNPV------SWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVR 160
Query: 159 ACTSPSNV 166
ACT +V
Sbjct: 161 ACTELGDV 168
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
Q EAL F + + + C ++ S + G ++H + + D+
Sbjct: 231 QGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLY 290
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ + +MY + +L+ ARV IE+PDL SWN+I+ + +EA+ LFS
Sbjct: 291 VGCSLSDMYARFKNLDSARVAFYR------IEAPDLVSWNSIVNAYSVEGLLSEALVLFS 344
Query: 140 EMRDRELIPDGLTVRSLLCACTS 162
EMRD L PDG+TVR LLCAC
Sbjct: 345 EMRDSGLRPDGITVRGLLCACVG 367
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++S + L ++ ++VH + + D +L N +++ Y KCGSL+DA + + M
Sbjct: 462 VLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNR 521
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
D+ SW+++I G A A EA+ LFS MR + P+ +T +L AC+
Sbjct: 522 -----DVFSWSSLIVGYAQFGYAKEALDLFSRMRSLGIRPNHVTFIGVLTACS 569
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
+ C+ L + GR+VH H L S+ D+++QN ++ MY K G ++D ++ +
Sbjct: 159 VRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFER------ 212
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
I+ DL SW +IIAG A EA+ +F +M
Sbjct: 213 IKDKDLISWGSIIAGFAQQGFEMEALQVFRKM 244
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 11/147 (7%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSS 72
N+ ++ L +EALV F ++++ +RP T L+ C +L GR +H +++
Sbjct: 328 NAYSVEGLLSEALVLFSEMRDSG---LRPDGITVRGLLCACVGRDALYHGRLIHSYLVKL 384
Query: 73 KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNAN 132
DV + N +L+MY +C L A V E I+ D+ +WN+I+ A ++
Sbjct: 385 GLDGDVSVCNSLLSMYARCSDLSSAMDVFHE------IKDQDVVTWNSILTACAQHNHPE 438
Query: 133 EAMSLFSEMRDRELIPDGLTVRSLLCA 159
E + LFS + E D +++ ++L A
Sbjct: 439 EVLKLFSLLNKSEPSLDRISLNNVLSA 465
>gi|225459405|ref|XP_002284293.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Vitis vinifera]
Length = 595
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 11/150 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
Q EAL F + NT+ P+ T ++ C ++L+ G+++H I+ + D
Sbjct: 242 QGRGTEALSMFSQMMFNTS---SPNEFTVCSVLKACGEEKALEFGKQLHGAIIKKMFKED 298
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + ++ MY KCG + D+R V D M +RN + +W +IIAG A EA+SL
Sbjct: 299 VFIGTSLVGMYAKCGEILDSRKVFDGMKKRNTV------TWTSIIAGYARNGQGEEAISL 352
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
F M+ R++ + LTV S+L AC S N+L
Sbjct: 353 FRVMKRRKIFANNLTVVSILRACGSTRNLL 382
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 8/134 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A +FL+ + P+ TY+ + C+ L ++ G+ +H + + + +V + + ++N
Sbjct: 450 ALEFLKEMLEEGVEPNPFTYSSALKACAHLEAILQGKLIHSSVNKTLALSNVFVGSALIN 509
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG + +A V D MPQRN L SW A+I G A EA+ L M+ +
Sbjct: 510 MYAKCGYVSEAIQVFDSMPQRN------LVSWKAMIVGYARNGLCGEALKLMYRMQAEGI 563
Query: 147 IPDGLTVRSLLCAC 160
D + ++L AC
Sbjct: 564 EVDDYILTTVLSAC 577
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 8/137 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+EAL FD N R T+ C+++ CS +LGR++H I+ + ++++ +
Sbjct: 146 DEALRLFDDCIEN-GVRANGKTFVCVLNLCSKRLDFELGRQIHACIVKDNWR-NLIVDSA 203
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++ Y +CG L A D+MP+R+V+ W +I + EA+S+FS+M
Sbjct: 204 LVCFYAQCGDLSGAFHAFDQMPERDVV------CWTTMITACSQQGRGTEALSMFSQMMF 257
Query: 144 RELIPDGLTVRSLLCAC 160
P+ TV S+L AC
Sbjct: 258 NTSSPNEFTVCSVLKAC 274
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ C S R+L +G++VH I+ + Q ++ + + ++ Y KC A V M
Sbjct: 367 TVVSILRACGSTRNLLMGKEVHAQIMKNSMQSNIYIGSTLVWFYCKCEEHPFASKVLQNM 426
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P R+V+ SW AII+G S + EA+ EM + + P+ T S L AC
Sbjct: 427 PLRDVV------SWTAIISGYTSLGHEPEALEFLKEMLEEGVEPNPFTYSSALKACAHLE 480
Query: 165 NVL 167
+L
Sbjct: 481 AIL 483
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 27/159 (16%)
Query: 3 RNLKTQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLG 62
+N KT F N QPI N L+AF +LQ +C ++R +
Sbjct: 44 KNSKTWKNAGFLNVQPIVGHVNANLLAF-WLQ-----------------SCCTVREV--- 82
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
R+VH + + N +++ Y + G L +AR V D+MP+RNV+ SW A++
Sbjct: 83 RRVHAVVFKCLDNSVTYVNNNLISAYSRFGKLVEARKVFDKMPERNVV------SWTAVV 136
Query: 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
G + +EA+ LF + + + +G T +L C+
Sbjct: 137 NGYSRYGFDDEALRLFDDCIENGVRANGKTFVCVLNLCS 175
>gi|255566233|ref|XP_002524104.1| transferase, transferring glycosyl groups, putative [Ricinus
communis]
gi|223536672|gb|EEF38314.1| transferase, transferring glycosyl groups, putative [Ricinus
communis]
Length = 810
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 83/141 (58%), Gaps = 7/141 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N +N+A+ ++ LQ+ + + +IS+C+ L +L+LG K HD+++ +K +++L
Sbjct: 650 NCFNKAIELYNVLQSE-GVQANETVMVSVISSCAHLGALELGEKAHDYVVRNKITVNLIL 708
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+++MY +CGS++ A V DE+ ++ D SW A+IAG A +A +A+ FSE
Sbjct: 709 GTALVDMYARCGSIDKAVQVFDELGEK------DALSWTALIAGFAMHGHAEKALQYFSE 762
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M L P +T ++L AC+
Sbjct: 763 MIRTGLTPRDITFTAVLSACS 783
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
+F F + I P TY L+ C+ L S+ +G + H H++ + DV +QN ++N
Sbjct: 523 SFHFYIQSQRLGIFPDNLTYPFLVKACTQLGSIDMGMQAHGHVVRHGFENDVYVQNSLVN 582
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY G + A + M Q +V+ SW ++IAG + A LF +M ++ L
Sbjct: 583 MYSNLGDIRAASYIFQTMSQLDVV------SWTSMIAGYNKSGDVESARKLFDKMPEKNL 636
Query: 147 I 147
+
Sbjct: 637 V 637
>gi|255546183|ref|XP_002514151.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546607|gb|EEF48105.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 388
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 70/123 (56%), Gaps = 6/123 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
S + L+ C SL+ L +G++VH+ + S D+ + N ++ MYG CGS+ DAR V D+
Sbjct: 119 SVFGALLDCCGSLKLLDMGKRVHEFLRRSTFADDIEMNNKLIEMYGNCGSVRDARRVFDK 178
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
M +RN + SW+ +I+G A+ ++ + LF EM++ L PD T + AC+S
Sbjct: 179 MRERN------MRSWHLLISGYAANGQGDDGLLLFEEMKESGLRPDENTFSVVFAACSSA 232
Query: 164 SNV 166
+
Sbjct: 233 GAI 235
>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
melo]
Length = 1131
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 83/149 (55%), Gaps = 10/149 (6%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
QN + +AL F Q+ + I P +T+A ++ C+ + SLQ G++VH I + D
Sbjct: 692 QNHHEKAL---QFYQHMRSDNILPDQATFASVLRACAGMSSLQTGQEVHSLIFHTGFNMD 748
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ + +++MY KCG ++ + V EMP+RN + SWN++I G+A A EA+ +
Sbjct: 749 EITCSSLIDMYAKCGDVKGSLQVFHEMPRRNSV-----ISWNSMIVGLAKNGYAEEALEI 803
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNV 166
F +M + +IPD +T +L AC+ V
Sbjct: 804 FKQMEQQSIIPDEVTFLGVLSACSHAGRV 832
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 9/148 (6%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ E ++F T + S+ ++S +SL L G VH + +V + +
Sbjct: 289 FAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGS 348
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++NMY KC ++ A+ V + + +RN++ WNA++ G A A E M FS M+
Sbjct: 349 ALVNMYAKCSKMDAAKQVFNSLGERNIV------LWNAMLGGFAQNGLAQEVMEFFSYMK 402
Query: 143 DRELIPDGLTVRSLLCACTSPSNVLYLD 170
PD T S+ AC S + YLD
Sbjct: 403 RHGPQPDEFTFTSIFSACAS---LHYLD 427
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ + S C+SL L G ++H ++ +K ++ + N +++MY K G+L++AR
Sbjct: 412 TFTSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEAR------ 465
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
Q ++ D SWNAII G +EA +F M ++PD +++ S++ AC
Sbjct: 466 KQFEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACA 522
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 8/124 (6%)
Query: 38 NFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
N +RP+ T+A ++S CS L+ + G++VH + Q +++MY KC +L
Sbjct: 135 NHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQGGLIDMYAKCRNLR 194
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
DAR+V D + D SW +IAG EA+ +F +M+ +PD + + +
Sbjct: 195 DARLVFDGAL------NLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVT 248
Query: 156 LLCA 159
++ A
Sbjct: 249 VINA 252
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 13/145 (8%)
Query: 19 IQNLYN-EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQ 75
+Q YN EA F + +N + P + A ++S C++++ + G++ H ++
Sbjct: 487 VQEEYNDEAFFMFRRMVSNG---VLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLD 543
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
+ +++MY KCG + AR V MP RNV+ S NA+IAG + S+ EA+
Sbjct: 544 TSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVV------SINALIAGY-TMSHLEEAI 596
Query: 136 SLFSEMRDRELIPDGLTVRSLLCAC 160
LF E++ L P +T LL C
Sbjct: 597 HLFQEIQMVGLKPTEVTFAGLLDGC 621
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSK--SQPDVVLQNYI 84
A Q ++P+ T+A L+ C L LGR++H ++ S ++V + +
Sbjct: 595 AIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVS-L 653
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
L MY D+ + E+ L W A+I+G A ++ +A+ + MR
Sbjct: 654 LCMYMNSQRFADSETLFSELQY-----PKGLVVWTALISGYAQQNHHEKALQFYQHMRSD 708
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
++PD T S+L AC S++
Sbjct: 709 NILPDQATFASVLRACAGMSSL 730
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Query: 56 LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDL 115
L++L + +H L +L N I+++Y KCG+++ A+ + E D+
Sbjct: 54 LQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRL------EKKDV 107
Query: 116 ASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
+WN++++ + F M + + P+ T +L AC+ ++ Y
Sbjct: 108 FAWNSVLSMYLDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINY 160
>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
Length = 766
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 70/128 (54%), Gaps = 13/128 (10%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHIL-SSKSQPDV------VLQNYILNMYGKCGSLEDAR 98
YA L+S CS LRSL GR+VH H++ SS S PD VL N+++ MYG+C + + AR
Sbjct: 47 YAALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSAR 106
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V DEMP RN + SW ++IA A +A+ LFS M D + S +
Sbjct: 107 QVFDEMPARNPV------SWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVR 160
Query: 159 ACTSPSNV 166
ACT +V
Sbjct: 161 ACTELGDV 168
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
Q EAL F + + + C ++ S + G ++H + + D+
Sbjct: 231 QGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLY 290
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ + +MY +C +L+ ARV IE+PDL SWN+I+ + +EA+ LFS
Sbjct: 291 VGCSLSDMYARCKNLDSARVAFYR------IEAPDLVSWNSIVNAYSVEGLLSEALVLFS 344
Query: 140 EMRDRELIPDGLTVRSLLCACTS 162
EMRD L PDG+TVR LLCAC
Sbjct: 345 EMRDSGLRPDGITVRGLLCACVG 367
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
+ C+ L + GR+VH H L S+ D+++QN ++ MY K G ++D ++ +
Sbjct: 159 VRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFER------ 212
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
I+ DL SW +IIAG A EA+ +F EM
Sbjct: 213 IKDKDLISWGSIIAGFAQQGFEMEALQVFREM 244
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++S + L ++ ++VH + + D +L N +++ Y KCGSL+DA + + M
Sbjct: 462 VLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNR 521
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
D+ SW+++I G A A EA LFS MR + P+ +T +L AC+
Sbjct: 522 -----DVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACS 569
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 11/147 (7%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSS 72
N+ ++ L +EALV F ++++ +RP T L+ C +L GR +H +++
Sbjct: 328 NAYSVEGLLSEALVLFSEMRDSG---LRPDGITVRGLLCACVGRDALYHGRLIHSYLVKL 384
Query: 73 KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNAN 132
DV + N +L+MY +C L A V E I+ D+ +WN+I+ A ++
Sbjct: 385 GLDGDVSVCNSLLSMYARCSDLSSAMDVFHE------IKDQDVVTWNSILTACAQHNHPE 438
Query: 133 EAMSLFSEMRDRELIPDGLTVRSLLCA 159
E + LFS + E D +++ ++L A
Sbjct: 439 EVLKLFSLLNKSEPSLDRISLNNVLSA 465
>gi|359497691|ref|XP_003635608.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 317
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 70/123 (56%), Gaps = 6/123 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
ST +++ CSSL SLQ GRK H +L S + + + N ++ MY KCGS+ D+ E
Sbjct: 27 STLVSVLTACSSLASLQEGRKTHVLVLKSGYESHISICNALITMYCKCGSILDS-----E 81
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
+ R I+ PD+ SWNA+IA A + A++ F EMR + PDG+T SLL AC
Sbjct: 82 LAFRQ-IDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHA 140
Query: 164 SNV 166
V
Sbjct: 141 GKV 143
>gi|147797709|emb|CAN61058.1| hypothetical protein VITISV_011618 [Vitis vinifera]
Length = 529
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 80/137 (58%), Gaps = 12/137 (8%)
Query: 28 VAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
V++D + +N ++P+ T ++S CSSLR+L+ G+ VH ++ + + DV + N ++
Sbjct: 167 VSYDMVSSN----VKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEXDVFVHNALI 222
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
++Y KCGS+ DA V MP RNV+ SW ++I G + + NEA+ F +M
Sbjct: 223 DVYSKCGSIRDAVQVFQLMPMRNVV------SWTSLINGYSDNNCPNEALGFFKQMEAEN 276
Query: 146 LIPDGLTVRSLLCACTS 162
+ PD +TV ++C C+
Sbjct: 277 IRPDEITVLGVVCMCSK 293
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 12/149 (8%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS---KSQPD 77
N NEAL F ++ N R T ++ CS LRS +LG + +++ + K P
Sbjct: 260 NCPNEALGFFKQMEAE-NIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKTGLVKESP- 317
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ N +++M+ KCG+++ A + D M ++ ++ SW +I G+A + A+
Sbjct: 318 -AIANVLMDMHAKCGNIKRACQIFDGMEEKTIV------SWTIMIQGLAMYGHGLSALVR 370
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNV 166
F +M+ PD L SLL AC+ V
Sbjct: 371 FCQMQREGFKPDSLVFLSLLSACSHAGLV 399
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EA++ ++ ++ ++ T +I C + G ++H I + +V++Q +
Sbjct: 62 EAILIYNHVRKK-GLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTAL 120
Query: 85 LNMYG----KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
L+MYG CG + + DEMPQR DL WNA+IA A + + + +
Sbjct: 121 LSMYGLFDEDCG----LQQIFDEMPQR------DLVMWNALIAAYAHGNCPYKVREVSYD 170
Query: 141 MRDRELIPDGLTVRSLLCACTS 162
M + P+G+T S+L C+S
Sbjct: 171 MVSSNVKPNGVTAVSILSVCSS 192
>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 877
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 6/118 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P + L++ C+SL + + G++VH H++ + D N ++ Y KCGS+EDA +
Sbjct: 505 PFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFS 564
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+P+R V+ SW+A+I G+A + A+ LF M D + P+ +T+ S+LCAC
Sbjct: 565 SLPERGVV------SWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCAC 616
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 71/122 (58%), Gaps = 8/122 (6%)
Query: 41 IRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I+P+ + +C+++ C+ R++ GR+VH ++ + DV N +++MY K G ++ A
Sbjct: 198 IQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIAS 257
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V+ ++MP +V+ SWNA+I+G + + A+ L +M+ L+P+ + S+L
Sbjct: 258 VIFEKMPDSDVV------SWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILK 311
Query: 159 AC 160
AC
Sbjct: 312 AC 313
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM-PQRNVIESPDLASW 118
QLG +VH +++ DV + N ++ MYG G ++DAR V DE +RN + SW
Sbjct: 117 QLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAV------SW 170
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
N +++ +A+ +F EM + P ++ ACT N+
Sbjct: 171 NGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNI 218
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
+ ++ C+ + LGR++H ++ + + D + +++MY K L+DA V D M
Sbjct: 307 SSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSH 366
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
R DL WNA+I+G + +EA S+F +R L + T+ ++L + S
Sbjct: 367 R------DLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTAS 416
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
++EA F L+ + +T A ++ + +SL + R+VH D + N
Sbjct: 385 HDEAFSIFYGLRKE-GLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVN 443
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++ Y KC L DA V +E S D+ + ++I ++ + A+ LF EM
Sbjct: 444 GLIDSYWKCSCLSDAIRVFEE------CSSGDIIAVTSMITALSQCDHGEGAIKLFMEML 497
Query: 143 DRELIPDGLTVRSLLCACTSPS 164
+ L PD + SLL AC S S
Sbjct: 498 RKGLEPDPFVLSSLLNACASLS 519
>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
Length = 784
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 6/118 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P + L++ C+SL + + G++VH H++ + D N ++ Y KCGS+EDA +
Sbjct: 412 PFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFS 471
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+P+R V+ SW+A+I G+A + A+ LF M D + P+ +T+ S+LCAC
Sbjct: 472 SLPERGVV------SWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCAC 523
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 71/122 (58%), Gaps = 8/122 (6%)
Query: 41 IRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I+P+ + +C+++ C+ R++ GR+VH ++ + DV N +++MY K G ++ A
Sbjct: 105 IQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIAS 164
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V+ ++MP +V+ SWNA+I+G + + A+ L +M+ L+P+ + S+L
Sbjct: 165 VIFEKMPDSDVV------SWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILK 218
Query: 159 AC 160
AC
Sbjct: 219 AC 220
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM-PQRNVIESPDLASW 118
QLG +VH +++ DV + N ++ MYG G ++DAR V DE +RN + SW
Sbjct: 24 QLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAV------SW 77
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
N +++ +A+ +F EM + P ++ ACT N+
Sbjct: 78 NGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNI 125
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
+ ++ C+ + LGR++H ++ + + D + +++MY K L+DA V D M
Sbjct: 214 SSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSH 273
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
R DL WNA+I+G + +EA S+F +R L + T+ ++L + S
Sbjct: 274 R------DLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTAS 323
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
++EA F L+ + +T A ++ + +SL + R+VH D + N
Sbjct: 292 HDEAFSIFYGLRKE-GLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVN 350
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++ Y KC L DA V +E S D+ + ++I ++ + A+ LF EM
Sbjct: 351 GLIDSYWKCSCLSDAIRVFEE------CSSGDIIAVTSMITALSQCDHGEGAIKLFMEML 404
Query: 143 DRELIPDGLTVRSLLCACTSPS 164
+ L PD + SLL AC S S
Sbjct: 405 RKGLEPDPFVLSSLLNACASLS 426
>gi|302784186|ref|XP_002973865.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
gi|300158197|gb|EFJ24820.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
Length = 616
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY +++ CS++ L+ G++VH ++ + Q D +N ++NMY KCGS+ +AR V D M
Sbjct: 272 TYTTVLAACSAVEDLEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDGM 331
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
QR V+ SW II+ + EA+ L+ +M + P+G+T S+L AC+S
Sbjct: 332 KQRTVV------SWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSS 383
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A D + + + P+ T+A ++S CSSL +L+ G+ VH + ++ +PD+ + N +++
Sbjct: 355 ALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVS 414
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
+YGKCGS++ AR V D M RNV+ SW A+I+ A ++ EA+ L+ M +
Sbjct: 415 LYGKCGSVDSARKVFDRMKIRNVV------SWTAMISAYAHHRHSEEAIQLYKAMDLEGV 468
Query: 147 IPDGLTVRSLLCACT 161
++L AC+
Sbjct: 469 QASSFIYGTVLTACS 483
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 67/117 (57%), Gaps = 12/117 (10%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y L+ C L + G+K+H+H++ + +V + N+++ MY KCGSLEDA+ V D M
Sbjct: 73 YGNLLRDCGELAA---GKKIHEHVVKNGYYENVYVGNHLVQMYSKCGSLEDAKKVFDGMR 129
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+R+ I SW+ +IAG A EA+ L+ M + PDG T ++L AC+S
Sbjct: 130 RRDSI------SWSKMIAGYVRHGLAREAIKLYKAM---AIDPDGFTFSAVLNACSS 177
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 73/122 (59%), Gaps = 10/122 (8%)
Query: 45 TYACLISTCSSL--RSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
T++ +++ CSSL R+L++G+++H H+ +PDV + + ++ M+ KCGSL+++R V D
Sbjct: 167 TFSAVLNACSSLGPRALEVGKEIHAHMKRIWLKPDVFVDSALVTMFAKCGSLKESREVFD 226
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE--LIPDGLTVRSLLCAC 160
+ ++V+ WN++I + + EA+ LF M + P+ +T ++L AC
Sbjct: 227 DCRWKDVL------FWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVLAAC 280
Query: 161 TS 162
++
Sbjct: 281 SA 282
>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
Length = 1161
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+TY +++ CS+ ++L G +H HI DV + N +++MY +CG L AR + +
Sbjct: 386 TTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNT 445
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
MP+R DL SWNAIIAG A + EAM L+ +M+ + P +T LL ACT+
Sbjct: 446 MPKR------DLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNS 499
Query: 164 S 164
S
Sbjct: 500 S 500
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 6/125 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+ Y L+ C+ RSL +++H ++ + PD+ L N ++NMY KC S+ DA V +
Sbjct: 83 AAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLK 142
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
MP+R+VI SWN++I+ A +A LF EM+ IP +T S+L AC SP
Sbjct: 143 MPRRDVI------SWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSP 196
Query: 164 SNVLY 168
+ + Y
Sbjct: 197 AELEY 201
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 6/148 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
QN + F + + ++ +++ CSS +L+ G++VH I+ K Q DV
Sbjct: 766 QNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVR 825
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ +++MY KCGSLE+A+ V D ++NV+ +WNA+I A A++A+ F+
Sbjct: 826 VGAALISMYAKCGSLEEAQEVFDNFTEKNVV------TWNAMINAYAQHGLASKALDFFN 879
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNVL 167
M + PDG T S+L AC V+
Sbjct: 880 CMDKEGIKPDGSTFTSILSACNHSGLVM 907
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A ++ C + +L+LGR++H I+ S Q DV L N ++NMY +CGSL+DA V +
Sbjct: 589 TFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSL 648
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
RNV+ SW A+I G A +A LF +M++ P T S+L AC S +
Sbjct: 649 RHRNVM------SWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSA 702
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 8/138 (5%)
Query: 29 AFD-FLQ-NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AF+ F Q N F+ ST++ ++ C S L G+KV HIL+S + D + N +++
Sbjct: 672 AFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALIS 731
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
Y K GS+ DAR V D+MP R D+ SWN +IAG A A+ +M+++ +
Sbjct: 732 AYSKSGSMTDARKVFDKMPNR------DIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGV 785
Query: 147 IPDGLTVRSLLCACTSPS 164
+ + + S+L AC+S S
Sbjct: 786 VLNKFSFVSILNACSSFS 803
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 77/142 (54%), Gaps = 11/142 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
EA+ + +Q+ ++P T+ L+S C++ + G+ +H+ IL S + + L
Sbjct: 468 GEAMKLYKQMQSEG---VKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLA 524
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++NMY +CGS+ +A+ V + R++I SWN++IAG A + A LF EM
Sbjct: 525 NALMNMYRRCGSIMEAQNVFEGTRARDII------SWNSMIAGHAQHGSYEAAYKLFLEM 578
Query: 142 RDRELIPDGLTVRSLLCACTSP 163
+ L PD +T S+L C +P
Sbjct: 579 KKEGLEPDKITFASVLVGCKNP 600
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 7/145 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
Q +A F+ +Q F TY +++ C S L+ G+K+H I+ + Q D
Sbjct: 161 QGFKKKAFQLFEEMQT-AGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPR 219
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+QN +LNMYGKC L AR V + +R+V+ S+N ++ A + E + LF
Sbjct: 220 VQNSLLNMYGKCEDLPSARQVFSGIYRRDVV------SYNTMLGLYAQKAYVEECIGLFG 273
Query: 140 EMRDRELIPDGLTVRSLLCACTSPS 164
+M + PD +T +LL A T+PS
Sbjct: 274 QMSSEGIPPDKVTYINLLDAFTTPS 298
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY L+ ++ L G+++H ++ D+ + + M+ +CG + A+ +
Sbjct: 286 TYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAF 345
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
R+V+ +NA+IA +A + EA + +MR ++ + T S+L AC++
Sbjct: 346 ADRDVV------VYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACST 397
>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 83/151 (54%), Gaps = 9/151 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
NLY EAL F + + F T+ C++ CS L +L++G +VHD I+ ++ +
Sbjct: 116 NLYVEALSIFQVMLS-CAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFI 174
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N ++ MYGKCG L +AR V D+MP R+V+ SWN+++AG A ++A+ + E
Sbjct: 175 GNALVAMYGKCGCLREARKVLDQMPYRDVV------SWNSMVAGYAQSGQFDDALEICKE 228
Query: 141 MRDRELIPDGLTVRSL--LCACTSPSNVLYL 169
M L D T+ SL + TS NV Y+
Sbjct: 229 MDSLNLNHDAGTMASLSPVVCYTSLENVQYI 259
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 70/117 (59%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A L+ C L +L LGR++H +I QP+++L+N +L+MY KCG LE+AR V D+M
Sbjct: 308 TIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKM 367
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R+V+ SW ++++ +A++LF++M D PD + S+L AC+
Sbjct: 368 RLRDVV------SWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACS 418
>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
Length = 605
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 48/140 (34%), Positives = 78/140 (55%), Gaps = 7/140 (5%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
L + A+ F +Q N N P T ++S C+ + +L LG VH I S++ + +V +
Sbjct: 213 LTDAAISLFQTMQKN-NVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVS 271
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+++MY KCGS+ AR + D MP++N + +WNA+I+G + EA+ LF +M
Sbjct: 272 TALIDMYAKCGSITVARELFDLMPEKNEV------TWNAMISGYGLHGHGQEALKLFYDM 325
Query: 142 RDRELIPDGLTVRSLLCACT 161
+ P GLT S+L AC+
Sbjct: 326 LSSSVKPTGLTFLSVLYACS 345
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
R+ ST LI S L +H + + + +Y + + AR
Sbjct: 129 RVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQ 188
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ DE ++ LASWNA+I+G + A+SLF M+ + P+ +TV S+L A
Sbjct: 189 LFDESAEKT------LASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSA 242
Query: 160 C 160
C
Sbjct: 243 C 243
Score = 40.4 bits (93), Expect = 0.29, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
R +T ++ + L+ L+LG ++ + V L +++++ KCG +E AR+
Sbjct: 28 RFDLTTVIAVLPAVAELQELKLGMQILCLAIKCGFYSHVSLLTGLISLFSKCGEVEIARL 87
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+ E I DL S NA+I+G +++ LF E+
Sbjct: 88 LFGE------IRKKDLISCNAMISGFTCNGETEDSVRLFKEL 123
>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 627
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 79/143 (55%), Gaps = 10/143 (6%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
EAL+ L F Y L++ C R+L+ G++VH H++ ++ P L+
Sbjct: 36 QEALLEMVMLGPEIGFH----CYDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTR 91
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+L YGKC LEDAR V DEMP++NV+ SW A+I+ + +++EA+S+F+EM
Sbjct: 92 LLIFYGKCDCLEDARKVLDEMPEKNVV------SWTAMISRYSQTGHSSEALSVFAEMMR 145
Query: 144 RELIPDGLTVRSLLCACTSPSNV 166
+ P+ T ++L +C S +
Sbjct: 146 SDGKPNEFTFATVLTSCIRASGL 168
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 79/144 (54%), Gaps = 12/144 (8%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
L EAL F LQ+ +RP+ TYA L++ S L L G++ H H+L +
Sbjct: 232 GLDEEALEMFQRLQSEG---MRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYA 288
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
VLQN +++MY KCG+L A+ + D MP+R I SWNA++ G + E + LF
Sbjct: 289 VLQNSLIDMYSKCGNLSYAQRLFDNMPERTAI------SWNAMLVGYSKHGLGREVLELF 342
Query: 139 SEMRDRELI-PDGLTVRSLLCACT 161
MRD + + PD +T+ ++L C+
Sbjct: 343 RLMRDEKRVKPDAVTLLAVLSGCS 366
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A ++++C L LG+++H I+ + + + +L+MY K G +E+AR + + +
Sbjct: 154 TFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECL 213
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P+R+V+ S AIIAG A EA+ +F ++ + P+ +T SLL A +
Sbjct: 214 PERDVV------SCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSG 265
>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 83/151 (54%), Gaps = 9/151 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
NLY EAL F + + F T+ C++ CS L +L++G +VHD I+ ++ +
Sbjct: 116 NLYVEALSIFQVMLS-CAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFI 174
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N ++ MYGKCG L +AR V D+MP R+V+ SWN+++AG A ++A+ + E
Sbjct: 175 GNALVAMYGKCGCLREARKVLDQMPYRDVV------SWNSMVAGYAQSGQFDDALEICKE 228
Query: 141 MRDRELIPDGLTVRSL--LCACTSPSNVLYL 169
M L D T+ SL + TS NV Y+
Sbjct: 229 MDSLNLNHDAGTMASLSPVVCYTSLENVQYI 259
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A L+ C L +L LGR++H +I +P+++L+N +L+MY KCG LE+AR V D+M
Sbjct: 308 TIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKM 367
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R+V+ SW ++++ +A++LF++M D PD + S+L AC+
Sbjct: 368 RLRDVV------SWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACS 418
>gi|115444423|ref|NP_001045991.1| Os02g0164600 [Oryza sativa Japonica Group]
gi|49388051|dbj|BAD25165.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|49388408|dbj|BAD25541.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535522|dbj|BAF07905.1| Os02g0164600 [Oryza sativa Japonica Group]
gi|125538213|gb|EAY84608.1| hypothetical protein OsI_05976 [Oryza sativa Indica Group]
gi|125580926|gb|EAZ21857.1| hypothetical protein OsJ_05503 [Oryza sativa Japonica Group]
gi|215737275|dbj|BAG96204.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 476
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 76/123 (61%), Gaps = 8/123 (6%)
Query: 41 IRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP +T + S C+ L SL+ + +H ++ + +++++N +++MYGKCGS+E AR
Sbjct: 219 VRPNVATVVSVASACAGLGSLEYAKGLHAYVEKVGLEGELIVKNSLIDMYGKCGSIELAR 278
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+ MPQ+ DL SW A+I+G+AS + EA++LF M++ ++PD T +L
Sbjct: 279 GLFGLMPQK------DLHSWTAMISGLASHGHGKEAVALFFSMKEAGVLPDSTTFVVVLS 332
Query: 159 ACT 161
AC+
Sbjct: 333 ACS 335
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 9/122 (7%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
LI CSS L +H L + Q ++N Y C AR V DEM ++
Sbjct: 127 LIHACSS-GDRPLCESLHGQSLRLGYSSVLFTQTALMNAYFACRFEVAARRVFDEMQAKD 185
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMR--DRELIPDGLTVRSLLCACTSPSNV 166
V+ +W +++G + +F EMR + + P+ TV S+ AC ++
Sbjct: 186 VV------AWTGMVSGYVDSGMFLRGVEVFQEMRSCEEAVRPNVATVVSVASACAGLGSL 239
Query: 167 LY 168
Y
Sbjct: 240 EY 241
>gi|302804037|ref|XP_002983771.1| hypothetical protein SELMODRAFT_180422 [Selaginella moellendorffii]
gi|300148608|gb|EFJ15267.1| hypothetical protein SELMODRAFT_180422 [Selaginella moellendorffii]
Length = 492
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 74/129 (57%), Gaps = 3/129 (2%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
RI+P+ T+ ++ CS L L++GR VH I+ + + + N ++NMYGKCGS DA
Sbjct: 259 RIKPNSVTFLAVLEACSLLGDLEIGRGVHGQIVEAGFDGEENVSNGLINMYGKCGSWSDA 318
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
RVV D +R+ + + SWN++I A +ANEA+ +F EMR PD +T ++
Sbjct: 319 RVVFDA-ARRSSLRRNTVVSWNSMIEAYAQLGHANEAVEVFQEMRLDGTKPDQVTFLEMM 377
Query: 158 CACTSPSNV 166
AC+ V
Sbjct: 378 FACSHAGLV 386
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 11/142 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
QN + V R STY ++ C SL GR +H I S+ + DVV
Sbjct: 145 QNGHRREAVELYRRMEEEGIRADESTYPSVLGACQSLAE---GRSIHARICSAGLELDVV 201
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ + +++M+G+ G+LE AR V D M +NVI +W A+I+ A + +A+ F+
Sbjct: 202 VGSALVSMHGRFGALEAARDVFDRMEHKNVI------TWCAMISAYAQNGHPRQALDGFA 255
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
M + P+ +T ++L AC+
Sbjct: 256 RM--GRIKPNSVTFLAVLEACS 275
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 18/132 (13%)
Query: 43 PSTYACLISTCSSLRSL-----------QLGRKVHDHIL-SSKSQPDVVLQNYILNMYGK 90
P+ A L+S ++ + ++ R V D I+ + ++ DV+++ ++NM+ K
Sbjct: 55 PAESATLVSAIGAIAGIGDLALARAIEVRVRRTVLDRIIVAGGARSDVIVETAMINMFSK 114
Query: 91 CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDG 150
CG++ +A V D + RN++ SWNA+I A + EA+ L+ M + + D
Sbjct: 115 CGAVIEALAVFDRIQDRNLV------SWNAMITAFAQNGHRREAVELYRRMEEEGIRADE 168
Query: 151 LTVRSLLCACTS 162
T S+L AC S
Sbjct: 169 STYPSVLGACQS 180
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MYG+CG L AR D IE P+L SW ++A + A+ LF M D++
Sbjct: 1 MYGRCGELSRAREAFD------AIEEPNLFSWAILMAAYVLNGHDRAALRLFRAM-DQQG 53
Query: 147 IP 148
IP
Sbjct: 54 IP 55
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+TY +++ CS+ ++L+ G+ +H HI DV + N +++MY +CG L AR +
Sbjct: 331 TTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYT 390
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
MP+R DL SWNAIIAG A + EAM L+ +M+ + P +T LL AC +
Sbjct: 391 MPKR------DLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANS 444
Query: 164 S 164
S
Sbjct: 445 S 445
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+TY L+ C+ R L +++H ++ + PD+ L N ++NMY KC S+ DA V E
Sbjct: 28 ATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKE 87
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
MP+R+VI SWN++I+ A +A LF EM++ IP+ +T S+L AC SP
Sbjct: 88 MPRRDVI------SWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSP 141
Query: 164 SNV 166
+ +
Sbjct: 142 AEL 144
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 75/139 (53%), Gaps = 8/139 (5%)
Query: 28 VAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
A+ Q N + P T+A ++S C + +L+LG+++H I S Q DV L N ++
Sbjct: 515 TAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALI 574
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
NMY +CGSL+DAR V + R+V+ SW A+I G A +A+ LF +M++
Sbjct: 575 NMYIRCGSLQDARNVFHSLQHRDVM------SWTAMIGGCADQGEDMKAIELFWQMQNEG 628
Query: 146 LIPDGLTVRSLLCACTSPS 164
P T S+L CTS +
Sbjct: 629 FRPVKSTFSSILKVCTSSA 647
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 74/129 (57%), Gaps = 6/129 (4%)
Query: 36 NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
N FR ST++ ++ C+S L G+KV +IL+S + D + N +++ Y K GS+
Sbjct: 626 NEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMT 685
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
DAR V D+MP R D+ SWN IIAG A A+ +M++++++P+ + S
Sbjct: 686 DAREVFDKMPSR------DIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVS 739
Query: 156 LLCACTSPS 164
LL AC+S S
Sbjct: 740 LLNACSSFS 748
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 6/148 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
QN + V F + + ++ L++ CSS +L+ G++VH I+ K Q DV
Sbjct: 711 QNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVR 770
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ +++MY KCGS +A+ V D + ++NV+ +WNA+I A A++A+ F+
Sbjct: 771 VGAALISMYAKCGSQGEAQEVFDNIIEKNVV------TWNAMINAYAQHGLASKALGFFN 824
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNVL 167
M + PDG T S+L AC VL
Sbjct: 825 CMEKEGIKPDGSTFTSILSACNHAGLVL 852
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 79/142 (55%), Gaps = 11/142 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
EA+ + +Q+ ++P T+ L+S C++ + G+ +H+ IL S + + L
Sbjct: 413 GEAMRLYKQMQSEG---VKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLA 469
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++NMY +CGSL +A+ V + R+VI SWN++IAG A + A LF EM
Sbjct: 470 NALMNMYRRCGSLMEAQNVFEGTQARDVI------SWNSMIAGHAQHGSYETAYKLFQEM 523
Query: 142 RDRELIPDGLTVRSLLCACTSP 163
++ EL PD +T S+L C +P
Sbjct: 524 QNEELEPDNITFASVLSGCKNP 545
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 75/145 (51%), Gaps = 7/145 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
Q +A F+ +QN F TY +++ C S L+ G+K+H I+ + Q D
Sbjct: 106 QGFKKKAFQLFEEMQN-AGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPR 164
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+QN +L+MYGKCG L AR V + R+V+ S+N ++ A + E + LF
Sbjct: 165 VQNSLLSMYGKCGDLPRARQVFAGISPRDVV------SYNTMLGLYAQKAYVKECLGLFG 218
Query: 140 EMRDRELIPDGLTVRSLLCACTSPS 164
+M + PD +T +LL A T+PS
Sbjct: 219 QMSSEGISPDKVTYINLLDAFTTPS 243
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY L+ ++ L G+++H + D+ + ++ M +CG ++ A+
Sbjct: 231 TYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGT 290
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
R+V+ +NA+IA +A + EA + MR + + T S+L AC++
Sbjct: 291 ADRDVV------VYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACST 342
>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
Length = 877
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 6/118 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P + L++ C+SL + + G++VH H++ + D N ++ Y KCGS+EDA +
Sbjct: 505 PFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFS 564
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+P+R V+ SW+A+I G+A + A+ LF M D + P+ +T+ S+LCAC
Sbjct: 565 SLPERGVV------SWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCAC 616
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 73/123 (59%), Gaps = 8/123 (6%)
Query: 41 IRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I+P+ + +C+++ C+ R+++ GR+VH ++ DV N +++MY K G ++ A
Sbjct: 198 IQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIAS 257
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V+ ++MP +V+ SWNA+I+G + + A+ L +M+ L+P+ T+ S+L
Sbjct: 258 VIFEKMPDSDVV------SWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILK 311
Query: 159 ACT 161
AC+
Sbjct: 312 ACS 314
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + ++ CS + LGR++H ++ + + D + +++MY K L+DAR V D M
Sbjct: 305 TLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM 364
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
R DL NA+I+G + +EA+SLF E+R L + T+ ++L + S
Sbjct: 365 FHR------DLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTAS 416
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
++EAL F L+ + +T A ++ + +SL + R+VH + D + N
Sbjct: 385 HDEALSLFYELRKE-GLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVN 443
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++ Y KC L DA V +E S D+ + ++I ++ + A+ LF EM
Sbjct: 444 GLIDSYWKCSCLSDANRVFEE------CSSGDIIACTSMITALSQCDHGEGAIKLFMEML 497
Query: 143 DRELIPDGLTVRSLLCACTSPS 164
+ L PD + SLL AC S S
Sbjct: 498 RKGLEPDPFVLSSLLNACASLS 519
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM-PQRNVIESPDLASW 118
+LG +VH +++ DV + N ++ MYG G ++DAR V +E +RN + SW
Sbjct: 117 RLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAV------SW 170
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
N +++ +A+ +F EM + P ++ ACT N+
Sbjct: 171 NGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNI 218
>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
Length = 877
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 6/118 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P + L++ C+SL + + G++VH H++ + D N ++ Y KCGS+EDA +
Sbjct: 505 PFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFS 564
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+P+R V+ SW+A+I G+A + A+ LF M D + P+ +T+ S+LCAC
Sbjct: 565 SLPERGVV------SWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCAC 616
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 73/123 (59%), Gaps = 8/123 (6%)
Query: 41 IRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I+P+ + +C+++ C+ R+++ GR+VH ++ DV N +++MY K G ++ A
Sbjct: 198 IQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIAS 257
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V+ ++MP +V+ SWNA+I+G + + A+ L +M+ L+P+ T+ S+L
Sbjct: 258 VIFEKMPDSDVV------SWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILK 311
Query: 159 ACT 161
AC+
Sbjct: 312 ACS 314
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + ++ CS + LGR++H ++ + + D + +++MY K L+DAR V D M
Sbjct: 305 TLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM 364
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
R DL NA+I+G + +EA+SLF E+R L + T+ ++L + S
Sbjct: 365 FHR------DLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTAS 416
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
++EAL F L+ + +T A ++ + +SL + R+VH + D + N
Sbjct: 385 HDEALSLFYELRKE-GLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVN 443
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++ Y KC L DA V +E S D+ + ++I ++ + A+ LF EM
Sbjct: 444 GLIDSYWKCSCLSDANRVFEE------CSSGDIIACTSMITALSQCDHGEGAIKLFMEML 497
Query: 143 DRELIPDGLTVRSLLCACTSPS 164
+ L PD + SLL AC S S
Sbjct: 498 RKGLEPDPFVLSSLLNACASLS 519
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM-PQRNVIESPDLASW 118
+LG +VH +++ DV + N ++ MYG G ++DAR V +E +RN + SW
Sbjct: 117 RLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAV------SW 170
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
N +++ +A+ +F EM + P ++ ACT N+
Sbjct: 171 NGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNI 218
>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Glycine max]
Length = 854
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 84/143 (58%), Gaps = 9/143 (6%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+EAL + ++ F ST ++ C+SL L+LGR+ H H+L K D++L N
Sbjct: 466 DEALHLYKSMRR-VGFPADQSTLTSVLRACTSLSLLELGRQAHVHVL--KFDQDLILNNA 522
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+L+MY KCGSLEDA+ + + M +++VI SW+ +IAG+A + EA++LF M+
Sbjct: 523 LLDMYCKCGSLEDAKFIFNRMAKKDVI------SWSTMIAGLAQNGFSMEALNLFESMKV 576
Query: 144 RELIPDGLTVRSLLCACTSPSNV 166
+ P+ +T+ +L AC+ V
Sbjct: 577 QGPKPNHITILGVLFACSHAGLV 599
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY+ LI C + +++ G++VH HI S+ P L N ++NMY K LE+A+V+ D+M
Sbjct: 287 TYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKM 346
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P+RNV+ SW +I+ ++ + AM L + M ++P+ T S+L AC
Sbjct: 347 PERNVV------SWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRAC 396
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 9/120 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ ++ C L L +++H I+ + DV +++ ++++Y K G L +A V EM
Sbjct: 388 TFSSVLRACERLYDL---KQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREM 444
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+ D WN+IIA A S+ +EA+ L+ MR D T+ S+L ACTS S
Sbjct: 445 M------TGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLS 498
>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 858
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 72/122 (59%), Gaps = 8/122 (6%)
Query: 41 IRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I+P + C L++ C++L + + G+++H H + D+ N ++NMY KCGS+EDA
Sbjct: 482 IKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDAD 541
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
E+P R ++ SW+A+I G A + EA+ LF++M + P+ +T+ S+LC
Sbjct: 542 RAFSEIPNRGIV------SWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLC 595
Query: 159 AC 160
AC
Sbjct: 596 AC 597
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ CS R L +GRKVH + + + D + N ++ MY KCG L+D+R + +
Sbjct: 84 TFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGI 143
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+RNV+ SWNA+ + EA+ LF EM ++P+ ++ +L AC
Sbjct: 144 VERNVV------SWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNAC 193
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 71/123 (57%), Gaps = 8/123 (6%)
Query: 42 RPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP+ T + + C+++ +LGR++H ++ + D+ +++MY KC ++DAR
Sbjct: 281 RPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARR 340
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
D MP++++I +WNA+I+G + + +A+SLFS+M ++ + T+ ++L +
Sbjct: 341 AYDSMPKKDII------AWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKS 394
Query: 160 CTS 162
S
Sbjct: 395 VAS 397
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 41 IRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I P+ ++ +++ C+ L+ LGRK+H +L D N +++MY K G +E A
Sbjct: 179 IMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAV 238
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V + I PD+ SWNAIIAG + A+ L EM+ P+ T+ S L
Sbjct: 239 AVFQD------IAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALK 292
Query: 159 ACTS 162
AC +
Sbjct: 293 ACAA 296
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 66/121 (54%), Gaps = 6/121 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T + ++ + +SL+++++ +++H + S D + N +L+ YGKC +++A + +E
Sbjct: 386 TTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEE 445
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
DL ++ ++I + + EA+ L+ +M+D ++ PD SLL AC +
Sbjct: 446 RTWE------DLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANL 499
Query: 164 S 164
S
Sbjct: 500 S 500
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 64 KVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIA 123
++H H++ D L+N+++ +Y KC AR + DE + +V+ SW+++++
Sbjct: 2 ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVV------SWSSLLS 55
Query: 124 GVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
G EA+ +F+EM + + T S+L AC+
Sbjct: 56 GYVQNGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACS 93
>gi|302785790|ref|XP_002974666.1| hypothetical protein SELMODRAFT_101 [Selaginella moellendorffii]
gi|300157561|gb|EFJ24186.1| hypothetical protein SELMODRAFT_101 [Selaginella moellendorffii]
Length = 921
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 9/122 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+AC++S C+ L+ ++ G+KVH I S ++ D VLQN +LN+Y KCG LE++R + + M
Sbjct: 1 TFACVLSACAGLKDMERGKKVHRRIRESVARVDTVLQNALLNLYAKCGDLEESRRIFEAM 60
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+R V A+WN +I EA+ F M + P +T S+L AC SP
Sbjct: 61 ERRTV------ATWNTMITAYVQHDFFQEALEAFRRM---DAPPSSITFTSVLGACCSPD 111
Query: 165 NV 166
++
Sbjct: 112 DL 113
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
FR ++ + +C++L + R +H I SS PD+VL N ++N+Y KCG LE+A
Sbjct: 596 GFRPGSPIFSAALVSCTALEDVSRARAIHGVIKSSDFYPDLVLSNVLMNVYAKCGELEEA 655
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
R+V D+M ++N + SW +I G A EA+ L+ M
Sbjct: 656 RLVFDQMTEKNEV------SWTTMIGGYAQNGRPAEALELYKAM 693
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 17/152 (11%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSS--KSQ 75
+ + EAL AF + PS T+ ++ C S L+ G+ +H I +S + Q
Sbjct: 78 HDFFQEALEAFRRMDAP------PSSITFTSVLGACCSPDDLETGKAIHRQIGASSPQIQ 131
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
D +LQN ++ MYGKCGSLEDA V + ++N SW A+I A A+
Sbjct: 132 ADEILQNSLVTMYGKCGSLEDAERVFHGIRRKNAF------SWTAMITAYAQNGYERRAI 185
Query: 136 SLFSEMRDRELI-PDGLTVRSLLCACTSPSNV 166
+F +M + PD +T +L AC++ ++
Sbjct: 186 EVFGDMMSEGRVEPDPITYAGVLTACSTLGDL 217
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 8/147 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
YN+ + + L+ I P A ++ CS L++L+ GR VH I S +P +++
Sbjct: 377 YNQRGYSMEALELYHCMDIEPDDIALSNVLQACSRLKNLEQGRAVHSRIASRDFEPSLMV 436
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
Q +++MY KCG L +AR D R+VI SW ++I + + EA+ +F
Sbjct: 437 QTLLVDMYVKCGDLAEARRTFDGFKARDVI------SWTSLITAYSHENFGREALEVFHS 490
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNVL 167
M + P+ +T +++ AC+ S++L
Sbjct: 491 MELEGVEPNSITFCTVIDACSRLSSLL 517
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ +++ CS+L + G+ + D I + + D VLQ+ IL+++ +CGSL R + D M
Sbjct: 303 TFSKILAACSNLEDFETGKTIEDRIYTLGLEYDDVLQDGILSLHARCGSLVGTREMFDRM 362
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P R V+ +W +IA + EA+ L+ M ++ PD + + ++L AC+
Sbjct: 363 PHRTVV------TWTTMIAAYNQRGYSMEALELYHCM---DIEPDDIALSNVLQACSRLK 413
Query: 165 NV 166
N+
Sbjct: 414 NL 415
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 8/157 (5%)
Query: 6 KTQLRFTFYNSQPIQNLYNE-ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRK 64
K +T + QN Y A+ F + + P TYA +++ CS+L L+ G +
Sbjct: 163 KNAFSWTAMITAYAQNGYERRAIEVFGDMMSEGRVEPDPITYAGVLTACSTLGDLETGMR 222
Query: 65 VHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124
+H ++ SK ++ ++++YGK G EDA V + + R+V+ W A IA
Sbjct: 223 IHA-LIRSKGVESAMVSTGLIDLYGKWGFFEDALQVFESVRDRDVV------IWTAFIAA 275
Query: 125 VASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ A+ LF +M L + +T +L AC+
Sbjct: 276 CVYHGQSGFALELFRKMEAEGLQANNVTFSKILAACS 312
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL + + NF + +IS+C+ L +L G++VH + + Q + V+ +
Sbjct: 685 EALELYKAMDVQPNF----IAFVPVISSCADLGALVEGQRVHARLSDAGLQNNEVIVTAL 740
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+NMY KCG L AR D PD +WN++ A + ++ + L+ EM +
Sbjct: 741 VNMYAKCGKLGLAREFFDS------TYCPDAGAWNSMATAYAQFGHGSQVLELYREMCLQ 794
Query: 145 ELIPDGLTVRSLLCACT 161
+ P+G+T+ S+L AC+
Sbjct: 795 GVQPNGITLLSVLVACS 811
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+N EAL F ++ + P+ T+ +I CS L SL GR +H ++++ D
Sbjct: 478 ENFGREALEVFHSMELEG---VEPNSITFCTVIDACSRLSSLLPGRALHSRVVATGHISD 534
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ N +++MY K G ++ ARVV D +P + SW ++ + +++EA+ +
Sbjct: 535 EFVGNALVSMYSKFGRVDFARVVFDSIPVKR------YPSWRVMLVALTQNGHSHEALEM 588
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+S + P + L +CT+ +V
Sbjct: 589 YSRIHLEGFRPGSPIFSAALVSCTALEDV 617
>gi|49533766|gb|AAT66765.1| Putative selenium-binding protein, related [Solanum demissum]
Length = 741
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 6/124 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
S Y L+ CS +SL+ + +H+H++ S D+ + N IL MYGKCGS++DA +V +
Sbjct: 380 SRYIMLMDVCSEDKSLEDAKSIHEHLVRSHPHLDIKMYNKILEMYGKCGSMKDAFLVFRK 439
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
MPQRN L SW+ +I + +A+ LF E ++ + PDG + AC+
Sbjct: 440 MPQRN------LTSWDTMITWLGKNGLGEDAIELFGEFKETGMKPDGQMFLGVFHACSVV 493
Query: 164 SNVL 167
+++
Sbjct: 494 GDIV 497
>gi|302759917|ref|XP_002963381.1| hypothetical protein SELMODRAFT_80412 [Selaginella moellendorffii]
gi|300168649|gb|EFJ35252.1| hypothetical protein SELMODRAFT_80412 [Selaginella moellendorffii]
Length = 860
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 9/122 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+AC++S C+ L+ ++ G+KVH I S ++ D VLQN +LN+Y KCG LE++R + + M
Sbjct: 32 TFACVLSACAGLKDMERGKKVHRRIRESVARVDTVLQNALLNLYAKCGDLEESRRIFEAM 91
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+R V A+WN +I EA+ F M + P +T S+L AC SP
Sbjct: 92 ERRTV------ATWNTMITAYVQHDFFQEALEAFRRM---DAPPSSITFTSVLGACCSPD 142
Query: 165 NV 166
++
Sbjct: 143 DL 144
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
FR ++ + +C++L + R +H I SS PD+VL N ++N+Y KCG LE A
Sbjct: 530 GFRPGSPIFSAALVSCTALEDVSRARAIHGVIKSSDFYPDLVLSNVLMNVYAKCGELEKA 589
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
R+V D+M ++N + SW +I G A EA+ L+ M
Sbjct: 590 RLVFDQMTEKNEV------SWTTMIGGYAQNGRPAEALELYKAM 627
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 8/147 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
YN+ + + L+ I P A ++ CS L++L+ GR VH I S +P +++
Sbjct: 311 YNQRGYSMEALELYHCMDIEPDDIALSNVLQACSRLKNLEQGRAVHSRIASRDFEPSLMV 370
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
Q +++MY KCG L +AR D R+VI SW ++I + + EA+ +F
Sbjct: 371 QTLLVDMYVKCGDLAEARRTFDGFKARDVI------SWTSLITAYSHENFGREALEVFHS 424
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNVL 167
M + P+ +T +++ AC+ S++L
Sbjct: 425 MELEGVEPNSITFCTVIDACSRLSSLL 451
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 71/146 (48%), Gaps = 15/146 (10%)
Query: 26 ALVAFDFLQNNTN-FR---IRPS--TYACLISTCSSLRSLQLGRKVHDHILSS--KSQPD 77
A V DF Q FR PS T+ ++ C S L+ G+ +H I S + Q D
Sbjct: 105 AYVQHDFFQEALEAFRRMDAPPSSITFTSVLGACCSPDDLETGKAIHRQIGGSSPQIQAD 164
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+LQN ++ MYGKCGSLEDA V + ++N SW A+I A A+ +
Sbjct: 165 EILQNSLVTMYGKCGSLEDAERVFHGIRRKNAF------SWTAMITAYAQNGYERRAIEV 218
Query: 138 FSEMRDRELI-PDGLTVRSLLCACTS 162
F +M + PD +T +L AC++
Sbjct: 219 FGDMMSEGRVEPDPITYAGVLTACST 244
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 6 KTQLRFTFYNSQPIQNLYNE-ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRK 64
K +T + QN Y A+ F + + P TYA +++ CS+L L+ G +
Sbjct: 194 KNAFSWTAMITAYAQNGYERRAIEVFGDMMSEGRVEPDPITYAGVLTACSTLGDLETGMR 253
Query: 65 VH---DHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
+H I + + D VLQ+ IL+++ +CGSL R + D MP R V+ +W +
Sbjct: 254 IHALIHRIYTLGLEYDDVLQDGILSLHARCGSLVGTREMFDRMPHRTVV------TWTTM 307
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
IA + EA+ L+ M ++ PD + + ++L AC+ N+
Sbjct: 308 IAAYNQRGYSMEALELYHCM---DIEPDDIALSNVLQACSRLKNL 349
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL + + NF + +IS+C+ L +L G++VH + + Q + V+ +
Sbjct: 619 EALELYKAMDVQPNF----IAFVPVISSCADLGALVEGQRVHARLSDAGLQNNEVIVTAL 674
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+NMY KCG L AR D PD +WN++ A + ++ + L+ EM +
Sbjct: 675 VNMYAKCGKLGLAREFFDS------TYCPDAGAWNSMATAYAQFGHGSQVLELYREMCLQ 728
Query: 145 ELIPDGLTVRSLLCACT 161
+ P+G+T+ S+L AC+
Sbjct: 729 GVQPNGITLLSVLVACS 745
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+N EAL F ++ + P+ T+ +I CS L SL GR +H ++++ D
Sbjct: 412 ENFGREALEVFHSMELEG---VEPNSITFCTVIDACSRLSSLLPGRALHSRVVATGHISD 468
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ N +++MY K G ++ AR+V D +P + SW ++ + +++EA+ +
Sbjct: 469 EFVGNALVSMYSKFGRVDFARMVFDSIPVKR------YPSWRVMLVALTQNGHSHEALEM 522
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+S + P + L +CT+ +V
Sbjct: 523 YSRIHLEGFRPGSPIFSAALVSCTALEDV 551
>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
Length = 716
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 52/138 (37%), Positives = 73/138 (52%), Gaps = 9/138 (6%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ EAL F + T+A ++ L +L+ GRKVH H+ S +VV+QN
Sbjct: 213 HAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQN 272
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++ MYGKCGS +AR V D M RNVI SW ++IA A N EA++LF M
Sbjct: 273 ALVTMYGKCGSPVEARKVFDSMTARNVI------SWTSMIAAYAQHGNPQEALNLFKRM- 325
Query: 143 DRELIPDGLTVRSLLCAC 160
++ P G++ S L AC
Sbjct: 326 --DVEPSGVSFSSALNAC 341
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 46/123 (37%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+AC + C+S+ L GR +H IL+SK D VLQ+ +LNMY KC + +AR V + M
Sbjct: 133 TFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGM 192
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCACTSP 163
RNV S+ A+I+ EA+ LFS M E I P+ T ++L A
Sbjct: 193 KARNV------RSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGL 246
Query: 164 SNV 166
N+
Sbjct: 247 GNL 249
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L++ C+ L++L+ GR++H+H++ + + D+ L+ +L MY KCGSL+DA+ V + M
Sbjct: 36 LVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVFEGM---- 91
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
E DL +W++IIA A A+ L+ M + P+ +T L C S
Sbjct: 92 --EIKDLFAWSSIIAAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCAS 143
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 70/129 (54%), Gaps = 11/129 (8%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSK-SQPDVVLQNYILNMYGKCGSLEDA 97
+ PS +++ ++ C+ L +L GR++H ++ + + P ++ +L+MY +CGSL+DA
Sbjct: 327 VEPSGVSFSSALNACALLGALDEGREIHHRVVEANLASPQ--METSLLSMYARCGSLDDA 384
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R V + M R D S NA+IA +A+ ++ +M + DG+T S+L
Sbjct: 385 RRVFNRMKTR------DAFSCNAMIAAFTQHGRKKQALRIYRKMEQEGIPADGITFVSVL 438
Query: 158 CACTSPSNV 166
AC+ S V
Sbjct: 439 VACSHTSLV 447
>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
lyrata]
gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
lyrata]
Length = 950
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 49/139 (35%), Positives = 80/139 (57%), Gaps = 11/139 (7%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
EAL F +Q +RPS + ++S C++L SLQ GR+VH H++ + DV + +
Sbjct: 314 EALELFAQMQRQG---VRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDGDVYVAS 370
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++ MY KCG L A++V D P +++I WN+II+G AS EA+ +F EM
Sbjct: 371 VLMTMYVKCGELVKAKLVFDRFPSKDII------MWNSIISGYASHGLGEEALKVFHEMP 424
Query: 143 DRELIPDGLTVRSLLCACT 161
+P+ +T+ ++L AC+
Sbjct: 425 LSGTMPNKVTLIAILTACS 443
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N I++ Y G +AR + DEMP+RN++ SWN +++G EA ++F M
Sbjct: 52 NSIVSGYFANGLPREARQMFDEMPERNIV------SWNGLVSGYIKNRMIEEARNVFEIM 105
Query: 142 RDRELI 147
+R ++
Sbjct: 106 PERNVV 111
Score = 40.0 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
G ++DAR + D MP ++V+ S ++ I G+ +EA +F EMR+R +I
Sbjct: 155 GRIDDARKLYDMMPGKDVVASTNM------IGGLCREGRVDEAREIFDEMRERNVI 204
Score = 38.9 bits (89), Expect = 0.79, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V+ N ++ G+ G + AR V D+M R D A+W +I EA+ L
Sbjct: 265 VIACNAMIVALGEVGEIVKARRVFDQMEDR------DNATWRGMIKAYERKGFELEALEL 318
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
F++M+ + + P ++ S+L C + +++ Y
Sbjct: 319 FAQMQRQGVRPSFPSLISILSVCATLASLQY 349
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
++V N +++ Y K +E+AR V + MP+RNV+ SW A++ G EA
Sbjct: 78 NIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVV------SWTAMVKGYVQEGMVVEAEL 131
Query: 137 LFSEMRDR 144
LF M +R
Sbjct: 132 LFWRMPER 139
>gi|15231831|ref|NP_188050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546762|sp|Q9LUL5.2|PP229_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14330
gi|332641981|gb|AEE75502.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 710
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 45/118 (38%), Positives = 70/118 (59%), Gaps = 6/118 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T ++ CS + +L G+++H IL SK +PDV L N +++MYGKCG +E +R V D
Sbjct: 338 ATLTTILPACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFD- 396
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
V+ + DLASWN ++ A N E ++LF M + + PDG+T +LL C+
Sbjct: 397 -----VMLTKDLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCS 449
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 72/129 (55%), Gaps = 8/129 (6%)
Query: 41 IRPSTYACLIS--TCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I P ++ ++ C L+ L++GR +H I+ K + D V+ N +L +Y + G +DAR
Sbjct: 232 IEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDAR 291
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V D M +RNV+ +WN++I+ ++ +E +LF +M++ + T+ ++L
Sbjct: 292 KVFDGMSERNVV------TWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILP 345
Query: 159 ACTSPSNVL 167
AC+ + +L
Sbjct: 346 ACSRVAALL 354
>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 79/139 (56%), Gaps = 7/139 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y +AL +F L + + ST+AC +S+C+ L +LQ+G+++H ++ S D+ + N
Sbjct: 435 YLDALKSF-MLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSN 493
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++ MY KCGS+ A ++ + I+ D+ SWN++IA A N EA+ LF +M
Sbjct: 494 ALITMYAKCGSISSAELLFKD------IDHFDVVSWNSLIAAYALNGNGREALKLFHKME 547
Query: 143 DRELIPDGLTVRSLLCACT 161
+ PD +T +L AC+
Sbjct: 548 VEGVAPDEVTFVGILSACS 566
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 18/100 (18%)
Query: 55 SLRSLQLGR--------KVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
+L+ QLG+ KV H+ + + V N +++ + K G + DAR + D MPQ
Sbjct: 19 NLKITQLGKSGQIDEAIKVFQHM----THKNTVTHNSMISAFAKNGRISDARQLFDGMPQ 74
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
RN++ SWN++IA EA LF +M R+L
Sbjct: 75 RNIV------SWNSMIAAYLHNDRVEEARQLFDKMPTRDL 108
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
P+ V +L + + G + +AR + D+MP RNV+ +WNA+IA + +EA+
Sbjct: 231 PNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVV------AWNAMIAAYVQNCHVDEAI 284
Query: 136 SLFSEMRDRELI 147
SLF EM ++ I
Sbjct: 285 SLFMEMPEKNSI 296
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Query: 68 HILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127
I + S DVV N ++ Y +CG +++A + +M ++ D+ SWN ++A A
Sbjct: 347 QIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKK------DIVSWNTMVASYAQ 400
Query: 128 PSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYLD 170
+ A+ +F EM+++ ++ + SL+ T N YLD
Sbjct: 401 VGQMDAAIKIFEEMKEKNIV----SWNSLISGLT--QNGSYLD 437
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 68 HILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127
H+ + D+V N ++ Y + G ++ A + +EM ++N++ SWN++I+G+
Sbjct: 378 HLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIV------SWNSLISGLTQ 431
Query: 128 PSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ +A+ F M PD T L +C
Sbjct: 432 NGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCA 465
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 25/89 (28%)
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNV-------------------------IESPDLASW 118
++N Y + G L++AR + ++MP RNV I D+ W
Sbjct: 301 VINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCW 360
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELI 147
N +IAG + +EA+ LF +M ++++
Sbjct: 361 NTMIAGYSQCGRMDEALHLFKQMVKKDIV 389
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++ Y K ++AR + D MP + DL SWN+++ G + F EM
Sbjct: 144 NAMVAGYAKNRQFDEARRLFDAMPAK------DLVSWNSMLTGYTRNGEMRLGLQFFEEM 197
Query: 142 RDRELIPDGLTVRSLL 157
+R+++ L V +
Sbjct: 198 AERDVVSWNLMVDGFV 213
>gi|9279581|dbj|BAB01039.1| unnamed protein product [Arabidopsis thaliana]
Length = 717
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 45/118 (38%), Positives = 70/118 (59%), Gaps = 6/118 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T ++ CS + +L G+++H IL SK +PDV L N +++MYGKCG +E +R V D
Sbjct: 345 ATLTTILPACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFD- 403
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
V+ + DLASWN ++ A N E ++LF M + + PDG+T +LL C+
Sbjct: 404 -----VMLTKDLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCS 456
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 72/129 (55%), Gaps = 8/129 (6%)
Query: 41 IRPSTYACLIS--TCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I P ++ ++ C L+ L++GR +H I+ K + D V+ N +L +Y + G +DAR
Sbjct: 239 IEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDAR 298
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V D M +RNV+ +WN++I+ ++ +E +LF +M++ + T+ ++L
Sbjct: 299 KVFDGMSERNVV------TWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILP 352
Query: 159 ACTSPSNVL 167
AC+ + +L
Sbjct: 353 ACSRVAALL 361
>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
Length = 924
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 71/117 (60%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY+ ++ TC++L S+ LG+++H H++ + Q DV + + +++MY KCG+L D+R++ ++
Sbjct: 613 TYSTVLDTCANLASIGLGKQIHAHVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFEKA 672
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P R D +WNA+I G A EA+ LF M ++P+ T SLL AC
Sbjct: 673 PIR------DFVTWNAMICGYAHHGMGEEAIKLFESMVLMNIMPNHATFVSLLRACA 723
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 20/166 (12%)
Query: 11 FTFYNSQPIQNLYNEALVAFDFLQNN--------------TNFRIRPSTYACLISTCSSL 56
FT + + P +N + + + +QNN + S YA ++ +C++L
Sbjct: 236 FTVFYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKSCATL 295
Query: 57 RSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLA 116
L+LG ++H H L S D +++ L+MY KC +++DA+ + D + E+ +L
Sbjct: 296 PDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQDAQRLFD------MSENLNLQ 349
Query: 117 SWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
S+NA+I G + N A+ LF ++ L D +++ L AC +
Sbjct: 350 SYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACAT 395
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 61/110 (55%), Gaps = 10/110 (9%)
Query: 42 RPST----YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
+P+T ++ + C+ R+ +LG++ H H++ S +P V + N +L +Y CG+L A
Sbjct: 44 KPATSVANFSFVFKECAKQRAHELGKQAHAHMIISGFRPTVFVSNCLLQLYINCGNLGYA 103
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
+ D MP R+V+ SWNA+I G A+ ++ A F M R+++
Sbjct: 104 TKLFDGMPLRDVV------SWNAMIFGYAASNDMVRASLCFEMMPTRDVV 147
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 6/98 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
+++ ++ CS L + +LG ++H L DVV + +L+MY KC L+++ V M
Sbjct: 183 SFSVILKVCSILENYKLGTQIHGIALRMGYDTDVVSGSALLDMYAKCKRLDESFTVFYAM 242
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
PQ+N I SW+AIIAG + + + +F EM+
Sbjct: 243 PQKNWI------SWSAIIAGCVQNNFLDGGLKMFKEMQ 274
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
+ C++++ L G ++H S ++ + N ++MYGKC +L++A V DEM ++
Sbjct: 390 LRACATVKGLSEGLQLHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGRK-- 447
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
D SWNAIIA ++ +++ M + PD T S+L AC S
Sbjct: 448 ----DAVSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLKACAGDS 498
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 64/143 (44%), Gaps = 22/143 (15%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C+ SL G ++H I+ + + + +++MY KCG +++A + +++
Sbjct: 486 TFGSVLKACAG-DSLNHGMEIHTTIVKLGMASNPYIGSSLVDMYSKCGMIDEAEKIHNKI 544
Query: 105 -----------PQRNVIESPD----------LASWNAIIAGVASPSNANEAMSLFSEMRD 143
IE P + SWNAII+G + +A F+ M +
Sbjct: 545 FIGIGDSNTYSEHPETIEEPKGIQDRRVQEMIVSWNAIISGYVMRKQSEDAQRFFNRMME 604
Query: 144 RELIPDGLTVRSLLCACTSPSNV 166
+ PD T ++L C + +++
Sbjct: 605 MGITPDKFTYSTVLDTCANLASI 627
>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 590
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 69/123 (56%), Gaps = 6/123 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
ST +++ CSSL SLQ GRK H +L S + + + N ++ MY KCGS+ D+ + +
Sbjct: 300 STLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQ 359
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
I+ PD+ SWNA+IA A + A++ F EMR + PDG+T SLL AC
Sbjct: 360 ------IDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHA 413
Query: 164 SNV 166
V
Sbjct: 414 GKV 416
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Query: 73 KSQPD--VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN 130
+ PD +V ++ Y K G + A+++ D++P R DLASWNA+I G A +
Sbjct: 226 EQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCR------DLASWNAMITGYAQNGS 279
Query: 131 ANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
EA+ L S+M + PD T+ S+L AC+S
Sbjct: 280 GEEALKLHSQMLKMGMQPDHSTLISVLTACSS 311
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+V+ +++ Y K G +E AR + + MPQ+NV+ SW +I+G +EA +
Sbjct: 170 NVISYTAMVDGYAKIGEIEQARALFNCMPQKNVV------SWTVMISGYVENGKFDEAEN 223
Query: 137 LFSEMRDRELI 147
LF +M D+ ++
Sbjct: 224 LFEQMPDKNIV 234
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 15/63 (23%)
Query: 92 GSLEDARVVSDE-------MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
G +ED R+ DE MPQRN ASWNA+I+G+ EA LF EM R
Sbjct: 118 GCIEDERI--DEAWQYFQAMPQRNT------ASWNAMISGLVRYDRVEEASRLFEEMPRR 169
Query: 145 ELI 147
+I
Sbjct: 170 NVI 172
Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D V N I+ Y K G ++++ + MP +NV+ SWN++IAG +EA
Sbjct: 77 DTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVV------SWNSMIAGCIEDERIDEAWQ 130
Query: 137 LFSEMRDR 144
F M R
Sbjct: 131 YFQAMPQR 138
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
R+ H + S DV N + + G++ AR + DEMP R D SWN+II
Sbjct: 32 RQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQLFDEMPHR------DTVSWNSII 85
Query: 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
G +E+ LF M + ++ + S++ C +
Sbjct: 86 TGYWKNGCFDESKRLFGLMPTKNVV----SWNSMIAGCIEDERI 125
>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
Length = 533
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 49/139 (35%), Positives = 79/139 (56%), Gaps = 9/139 (6%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL+ FD +++ ++ + P T ++S C+ L LGRK HD I+ S+ + D L N +
Sbjct: 143 EALLLFDEMRD-SDCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSRMEIDTNLSNAL 201
Query: 85 LNMYGKCGSLEDARVVSDEMP--QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++MY KCG LE A + + +P +RN SWN +I+G + EA+ LFS M+
Sbjct: 202 MDMYAKCGDLEKAVDLFNGIPPTERNA------GSWNVLISGYGMHGHGKEALELFSRMQ 255
Query: 143 DRELIPDGLTVRSLLCACT 161
+ + P+ T S+L AC+
Sbjct: 256 EEGVEPNHFTFTSILSACS 274
Score = 72.0 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL+ F +Q + S L ++ VH + ++ + N I
Sbjct: 41 EALILFKKMQQEEGLLADSIAVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSI 100
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
L M+ KCG+ E AR+V D M +R+VI SWN++++G A EA+ LF EMRD
Sbjct: 101 LAMHTKCGNTEKARLVFDMMMERDVI------SWNSMLSGYTQNGQATEALLLFDEMRDS 154
Query: 145 ELIPDGLTVRSLLCAC 160
+ P +T ++ AC
Sbjct: 155 DCQPTPVTALIMVSAC 170
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE- 145
MY KCG D R + DEM + DL W A+I EA+ LF +M+ E
Sbjct: 1 MYAKCGLFVDCRKIFDEMSTK------DLVCWTAMITAYEQAEKPEEALILFKKMQQEEG 54
Query: 146 LIPDGLTVRSLLCA 159
L+ D + V S+ A
Sbjct: 55 LLADSIAVVSVASA 68
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 16/154 (10%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSS 72
N QP EAL F +Q F P+ Y LI C+ + L LGR +HD+ + +
Sbjct: 235 NQQP-----EEALELFKRMQAENIF---PNEYTMVSLIKACTEMGILTLGRGIHDYAIKN 286
Query: 73 KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNAN 132
+ V L +++MY KCGS++DA V + MP+++ L +WN++I +
Sbjct: 287 CIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKS------LPTWNSMITSLGVHGLGQ 340
Query: 133 EAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
EA++LFSEM + PD +T +LCAC NV
Sbjct: 341 EALNLFSEMERVNVKPDAITFIGVLCACVHIKNV 374
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L EAL F + + R T + ++ C+ +L+ G+ +HD ++ + +V +
Sbjct: 2204 GLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCV 2263
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
I++MY KCG +E A+ D M ++NV SW A++AG A EA+ +F +
Sbjct: 2264 GTSIIDMYCKCGRVEMAKKTFDRMKEKNV------KSWTAMVAGYGMHGRAKEALDIFYK 2317
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M + P+ +T S+L AC+
Sbjct: 2318 MVRAGVKPNYITFVSVLAACS 2338
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 77/149 (51%), Gaps = 15/149 (10%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL AF L+ R S++ C I +CS+L L GR H + D+ + + +
Sbjct: 1998 EALRAFSSLRKLGLIPTR-SSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSAL 2056
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF------ 138
++MY KCG L+DAR + DE+P RNV+ SW ++I G A+ A+ LF
Sbjct: 2057 IDMYSKCGQLKDARALFDEIPLRNVV------SWTSMITGYVQNEQADNALLLFKDFLEE 2110
Query: 139 -SEMRDRELIP-DGLTVRSLLCACTSPSN 165
+E+ D +P D + + S+L AC+ S
Sbjct: 2111 ETEVEDGNNVPLDSVVMVSVLSACSRVSG 2139
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 37/148 (25%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK-------------- 90
T+ +I C++ S+ LG+ VH ++ DV +QN +++ Y K
Sbjct: 127 TFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKM 186
Query: 91 -----------------CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
CG L++AR + DE+P +NV+ SW A+I G E
Sbjct: 187 RVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVV------SWTAMINGYIRNQQPEE 240
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACT 161
A+ LF M+ + P+ T+ SL+ ACT
Sbjct: 241 ALELFKRMQAENIFPNEYTMVSLIKACT 268
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 24 NEALVAF-DFLQNNT------NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
+ AL+ F DFL+ T N + ++S CS + + VH ++
Sbjct: 2098 DNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDG 2157
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+ + N +++ Y KCG ++ V D M +++ I SWN++IA A + EA+
Sbjct: 2158 SIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDI------SWNSMIAVYAQSGLSGEALE 2211
Query: 137 LFSEM-RDRELIPDGLTVRSLLCACT 161
+F M R + + +T+ ++L AC
Sbjct: 2212 VFHGMVRHVGVRYNAVTLSAVLLACA 2237
>gi|334187520|ref|NP_001190262.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
gi|223635618|sp|P0C8Q7.1|PP369_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08305
gi|332003897|gb|AED91280.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
Length = 534
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
YN+AL FD + + + T +I C+ L +L G+ VH +IL V+LQ
Sbjct: 221 YNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQT 280
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCGS+ DA V R ++ D WNAII G+AS E++ LF +MR
Sbjct: 281 SLIDMYAKCGSIGDAWSVF----YRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMR 336
Query: 143 DRELIPDGLTVRSLLCACT 161
+ ++ PD +T LL AC+
Sbjct: 337 ESKIDPDEITFLCLLAACS 355
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY L+ + S L + +LG +H ++ S + D+ + N +++MYG AR + DEM
Sbjct: 110 TYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEM 169
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
P +N L +WN+I+ A + A +F EM +R+++
Sbjct: 170 PHKN------LVTWNSILDAYAKSGDVVSARLVFDEMSERDVV 206
>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
Length = 787
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 6/142 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
QN E VA N R P T + +S C+ L +L LG+ +H I +P+V
Sbjct: 391 QNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVY 450
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ +++MY KCGS+ +AR + + M +NV+ SWNA+IAG EA+ L+
Sbjct: 451 VMTALIDMYAKCGSISEARRIFNTMDNKNVV------SWNAMIAGYGLHGQGAEALKLYK 504
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
+M D L+P T S+L AC+
Sbjct: 505 DMLDAHLLPTSATFLSVLYACS 526
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+EA+ +F + + + R +T A ++ + + + +GR VH +
Sbjct: 193 SEAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTG 252
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++++Y KCG +E AR + D M E PDL ++NA+I+G + +++LF+E+
Sbjct: 253 LISLYSKCGDVESARCLFDMM------EKPDLVAYNALISGYSVNGMVGSSVNLFTELMT 306
Query: 144 RELIPDGLTVRSLL 157
L P+ T+ +L+
Sbjct: 307 LGLWPNSSTLVALI 320
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
ST LI S L + +H +L S + + I ++ + +E AR D
Sbjct: 314 STLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDT 373
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
MP++ + SWNA+I+G A A++LF +M + P+ +T+ S L AC
Sbjct: 374 MPEKT------MESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSAC 424
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D + + + +Y ++ AR V D +P SPD WN ++AG+ + +EA+
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVP------SPDTVLWNTLLAGL----SGSEAVE 197
Query: 137 LFSEMR-DRELIPDGLTVRSLLCACTSPSNV 166
F+ M D + PD T+ S+L A ++V
Sbjct: 198 SFARMVCDGSVRPDATTLASVLPAAAEVADV 228
>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
Length = 610
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 21/169 (12%)
Query: 7 TQLRFTFYNSQPIQNLY---------------NEALVAFDFLQNNTNFRIRPSTYACLIS 51
Q F+ + P++NL ++AL F + ++ + ST + ++
Sbjct: 187 VQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLL 246
Query: 52 TCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIE 111
CS+L +L GR+VH + +V + +L+MY KCG L DA V DEM +
Sbjct: 247 GCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTK---- 302
Query: 112 SPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
D+ +WNA+I+G A +A+ LF +M+D ++PD +T+ ++L AC
Sbjct: 303 --DIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTAC 349
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 13/119 (10%)
Query: 44 STYACLIS---TCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
+TY CL++ S L L R++ D I PD V N +L+ + CG ++ AR V
Sbjct: 44 TTYNCLLAGYAKASGLIRLADARRLFDSI----PHPDTVSYNTLLSCHFACGDIDGARRV 99
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
MP + D+ SWN +++G++ + EA ++F M R + V +L C+
Sbjct: 100 FSTMPVK------DVTSWNTMVSGLSKNGASEEAAAMFRIMPVRNAVSWNAMVAALACS 152
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+ D +L +++ Y G+++ A MP RN++ SWNA++AG S A++A
Sbjct: 168 KTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLV------SWNAVVAGYVKNSRADDA 221
Query: 135 MSLFSEMRDRELI-PDGLTVRSLLCACTSPS 164
+ +F M + ++ P+ T+ S+L C++ S
Sbjct: 222 LRVFKTMVEDSIVQPNASTLSSVLLGCSNLS 252
>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
Length = 696
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 52/138 (37%), Positives = 73/138 (52%), Gaps = 9/138 (6%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ EAL F + T+A ++ L +L+ GRKVH H+ S +VV+QN
Sbjct: 193 HAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQN 252
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++ MYGKCGS +AR V D M RNVI SW ++IA A N EA++LF M
Sbjct: 253 ALVTMYGKCGSPVEARKVFDSMTARNVI------SWTSMIAAYAQHGNPQEALNLFKRM- 305
Query: 143 DRELIPDGLTVRSLLCAC 160
++ P G++ S L AC
Sbjct: 306 --DVEPSGVSFSSALNAC 321
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 46/123 (37%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+AC + C+S+ L GR +H IL+SK D VLQ+ +LNMY KC + +AR V + M
Sbjct: 113 TFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGM 172
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCACTSP 163
RNV S+ A+I+ EA+ LFS M E I P+ T ++L A
Sbjct: 173 KARNV------RSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGL 226
Query: 164 SNV 166
N+
Sbjct: 227 GNL 229
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L++ C+ L++L+ GR++H+H++ + + D+ L+ +L MY KCGSL+DA+ V + M
Sbjct: 16 LVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVFEGM---- 71
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
E DL +W++II+ A A+ L+ M + P+ +T L C S
Sbjct: 72 --EIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCAS 123
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 69/129 (53%), Gaps = 11/129 (8%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSK-SQPDVVLQNYILNMYGKCGSLEDA 97
+ PS +++ ++ C+ L +L GR++H ++ + + P ++ +L+MY +CGSL+DA
Sbjct: 307 VEPSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQ--METSLLSMYARCGSLDDA 364
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R V + M R D S NA+IA +A+ ++ M + DG+T S+L
Sbjct: 365 RRVFNRMKTR------DAFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIPADGITFVSVL 418
Query: 158 CACTSPSNV 166
AC+ S V
Sbjct: 419 VACSHTSLV 427
>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Vitis vinifera]
Length = 611
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 79/138 (57%), Gaps = 8/138 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A N +R++ + TY+ + C+SL +L+ G ++H + + D+V+ N +++
Sbjct: 223 ALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALID 282
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCGS++DAR+V D M ++ D SWNA+I+G + EA+ +F +M++ E+
Sbjct: 283 MYAKCGSIKDARLVFDLMNKQ------DEVSWNAMISGYSMHGLGREALRIFDKMQETEV 336
Query: 147 IPDGLTVRSLLCACTSPS 164
PD LT +L AC +
Sbjct: 337 KPDKLTFVGVLSACANAG 354
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A ++ C+++ L LG ++H H++ DV + N ++++Y KCG +E++ + E
Sbjct: 140 TFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAES 199
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P RN + +WN +I G + +A+ LF M + + +T S L AC S
Sbjct: 200 PHRNDV------TWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACAS 251
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 7/132 (5%)
Query: 31 DFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90
+F+ + + YA + C G+ +H IL D+ N +LNMY K
Sbjct: 26 EFVGHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVK 85
Query: 91 CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDG 150
L DA + DEMP+RN I S+ +I G A EA+ LF + RE++P+
Sbjct: 86 SDFLCDASKLFDEMPERNTI------SFVTLIQGYAESVRFLEAIELFVRLH-REVLPNQ 138
Query: 151 LTVRSLLCACTS 162
T S+L AC +
Sbjct: 139 FTFASVLQACAT 150
>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 6/118 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P + L++ C+SL + + G++VH H++ K DV N ++ Y KCGS+EDA +
Sbjct: 507 PFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFS 566
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+P + V+ SW+A+I G+A + A+ +F M D + P+ +T+ S+LCAC
Sbjct: 567 GLPDKGVV------SWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCAC 618
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Query: 41 IRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP+ + +C+++ C+ R L+ GRKVH ++ + DV N +++MY K G + A
Sbjct: 198 VRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAA 257
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+V ++P+ +V+ SWNA I+G + A+ L +M+ L+P+ T+ S+L
Sbjct: 258 LVFGKVPKTDVV------SWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSIL 310
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
R++H ++ + + D + +++MY K G L+DAR V + +P++ DL WNA+I
Sbjct: 325 RQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRK------DLLLWNALI 378
Query: 123 AGVASPSNANEAMSLFSEMR 142
+G + E++SLF MR
Sbjct: 379 SGCSHGGCHGESLSLFCRMR 398
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P + + L++ ++ +SL LG +H H+L KS +N++L+ Y KC AR V D
Sbjct: 4 PESISPLLTRYAATQSLFLGAHIHAHLL--KSGLLHAFRNHLLSFYSKCRLPGSARRVFD 61
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
E P P SW++++ ++ + EA++ F MR R
Sbjct: 62 ETP------DPCHVSWSSLVTAYSNNALPREALAAFRAMRAR 97
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 61 LGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ-RNVIESPDLASWN 119
LG +VH +S+ D+ + N ++ MYG G +++AR V DE + RN + SWN
Sbjct: 118 LGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAV------SWN 171
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+++ ++A+ LF EM + P+ ++ ACT ++
Sbjct: 172 GMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDL 218
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
I +T A ++ + +SL ++ +VH D + N +++ Y KC L A V
Sbjct: 404 INRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKV 463
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+E N+I ++ ++I ++ + +A+ LF EM + L PD + SLL AC
Sbjct: 464 FEEHSSDNII------AFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNAC 517
Query: 161 TSPS 164
S S
Sbjct: 518 ASLS 521
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 6/119 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y L+ +C + L +G++VH+HIL +P+V + N +L +Y CGS+ +AR + D+
Sbjct: 47 YVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFS 106
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
++V+ SWN +I+G A EA +LF+ M+ L PD T S+L AC+SP+
Sbjct: 107 NKSVV------SWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPA 159
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 44/128 (34%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RPS TY ++S C SL +L+ G+++H I+ S+ DV + + MY KCG+++DAR
Sbjct: 242 VRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAR 301
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V + +P R+VI +WN +I G+ EA +F M + PD +T ++L
Sbjct: 302 EVFECLPNRDVI------AWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILS 355
Query: 159 ACTSPSNV 166
AC P +
Sbjct: 356 ACARPGGL 363
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 68/116 (58%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY C++ CS+ +L+ G+++H ++ + D+ + N +++MY KCGS+EDA VS+ M
Sbjct: 450 TYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGM 509
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
R+V+ +WN +I G+A EA+ F M+ E+ P+ T +++ AC
Sbjct: 510 STRDVV------TWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSAC 559
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY ++S C+ L G+++H + DV N ++NMY K GS++DAR V D M
Sbjct: 349 TYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRM 408
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
P+R+V+ SW A++ G A E+ S F +M + + + +T +L AC++P
Sbjct: 409 PKRDVV------SWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNP 461
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 11/145 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ L EA F +Q + P T+ ++S CSS +L GR+VH ++ + +
Sbjct: 123 RGLGQEAFNLFTLMQQEG---LEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANN 179
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ N +++MY KCGS+ DAR V D M R D SW + A A E++
Sbjct: 180 ATVGNALISMYAKCGSVRDARRVFDAMASR------DEVSWTTLTGAYAESGYAQESLKT 233
Query: 138 FSEMRDRELIPDGLTVRSLLCACTS 162
+ M + P +T ++L AC S
Sbjct: 234 YHAMLQEGVRPSRITYMNVLSACGS 258
>gi|302796918|ref|XP_002980220.1| hypothetical protein SELMODRAFT_112433 [Selaginella moellendorffii]
gi|300151836|gb|EFJ18480.1| hypothetical protein SELMODRAFT_112433 [Selaginella moellendorffii]
Length = 739
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 44/131 (33%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 31 DFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90
+ +Q + ++ P Y C++ CSSL +L++GR+VH+ I+++ ++ L I+NMY K
Sbjct: 329 EMIQREESKKMDPVAYLCVLEACSSLSALKVGRQVHEEIVAAGFGDELPLAGAIVNMYCK 388
Query: 91 CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDG 150
CGSL +AR V D M RN+I +WN+++ G + A+ LF ++PD
Sbjct: 389 CGSLVEAREVFDGMKARNMI------AWNSMMGGYTQHGHPKRALQLFELACLDGVLPDE 442
Query: 151 LTVRSLLCACT 161
+T ++L AC+
Sbjct: 443 ITFVTILTACS 453
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 78/140 (55%), Gaps = 9/140 (6%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ EALV F ++ + T A ++ CSS++ L GR +H ++++K DVV+ N
Sbjct: 116 HREALVLFRQMERE-GVKANEVTLAAVLGICSSIKDLAGGRSIHGRVIAAKK--DVVIGN 172
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++NMY KCGSL +AR EM R+V+ SW +I ++ NEA+ +F EM
Sbjct: 173 ALVNMYSKCGSLREARASFQEMVVRDVV------SWTTMITALSEHGEWNEAVEIFWEMV 226
Query: 143 DRELIPDGLTVRSLLCACTS 162
+ P+ ++ ++L AC++
Sbjct: 227 SENVAPNEISCLAVLGACSN 246
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 19/151 (12%)
Query: 23 YNEALVAF-DFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPD-- 77
+NEA+ F + + N + P+ +CL + CS+L R +H+ I S + D
Sbjct: 215 WNEAVEIFWEMVSEN----VAPNEISCLAVLGACSNLGDRSQVRVIHEFIASGGLELDKK 270
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQ--RNVIESPDLASWNAIIAGVASPSNANEAM 135
+V+ N +++ YG+CGS DAR V D + RN + SW ++IA S A +
Sbjct: 271 LVVANTLIHTYGRCGSPSDARRVFDSLQHSARNAV------SWASMIAAYTSNEQAKAGV 324
Query: 136 SLFSEMRDRELIP--DGLTVRSLLCACTSPS 164
L+ EM RE D + +L AC+S S
Sbjct: 325 ELYQEMIQREESKKMDPVAYLCVLEACSSLS 355
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 57 RSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLA 116
R L ++H +++ D L N ++ +YGK G L+ A D + +NV
Sbjct: 48 RCLAAVEELHCRMIAQGLDADTYLGNNLVRVYGKFGGLDRAWAAFDRIAAKNVF------ 101
Query: 117 SWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
SW +I+ A + EA+ LF +M + + +T+ ++L C+S
Sbjct: 102 SWTIVISAFAQNGHHREALVLFRQMEREGVKANEVTLAAVLGICSS 147
>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial; Flags: Precursor
gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 628
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 10/143 (6%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
EAL+ L F Y L++ C R+L+ G++VH H++ ++ P L+
Sbjct: 37 QEALLEMAMLGPEMGFH----GYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTR 92
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+L YGKC LEDAR V DEMP++NV+ SW A+I+ + +++EA+++F+EM
Sbjct: 93 LLIFYGKCDCLEDARKVLDEMPEKNVV------SWTAMISRYSQTGHSSEALTVFAEMMR 146
Query: 144 RELIPDGLTVRSLLCACTSPSNV 166
+ P+ T ++L +C S +
Sbjct: 147 SDGKPNEFTFATVLTSCIRASGL 169
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 12/144 (8%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
L EAL F L + + P+ TYA L++ S L L G++ H H+L +
Sbjct: 233 GLDEEALEMFHRLHSEG---MSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYA 289
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
VLQN +++MY KCG+L AR + D MP+R I SWNA++ G + E + LF
Sbjct: 290 VLQNSLIDMYSKCGNLSYARRLFDNMPERTAI------SWNAMLVGYSKHGLGREVLELF 343
Query: 139 SEMRDRELI-PDGLTVRSLLCACT 161
MRD + + PD +T+ ++L C+
Sbjct: 344 RLMRDEKRVKPDAVTLLAVLSGCS 367
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 11/141 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+EAL F + + +P+ T+A ++++C L LG+++H I+ + +
Sbjct: 135 SEALTVFAEMMRSDG---KPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVG 191
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+ +L+MY K G +++AR + + +P+R+V+ S AIIAG A EA+ +F +
Sbjct: 192 SSLLDMYAKAGQIKEAREIFECLPERDVV------SCTAIIAGYAQLGLDEEALEMFHRL 245
Query: 142 RDRELIPDGLTVRSLLCACTS 162
+ P+ +T SLL A +
Sbjct: 246 HSEGMSPNYVTYASLLTALSG 266
>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
Length = 639
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 74/126 (58%), Gaps = 8/126 (6%)
Query: 36 NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
+ F T ++ C+ + L+ GR+VH H+L K D++L N +L+MY KCGSLE
Sbjct: 262 DAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHVL--KYDRDLILHNALLDMYCKCGSLE 319
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
DA + MPQR+VI SW+ +++G+A + EA+ +F M+ + + P+ +T+
Sbjct: 320 DADALFHRMPQRDVI------SWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVG 373
Query: 156 LLCACT 161
+L AC+
Sbjct: 374 VLFACS 379
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD-----VVLQNYILNMYGKCGSL 94
R P + L+ C + GR +H H+ + P + + N + +MY K G L
Sbjct: 61 RADPVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLL 120
Query: 95 EDARVVSDEMPQRNVIESPDLASWNAIIAGVASPS-NANEAMSLFSEMRDRELIPDGLTV 153
+DA + D MP RNV+ +W ++A +AS EA+ MR + P+ T
Sbjct: 121 DDALRMFDGMPVRNVV------TWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTF 174
Query: 154 RSLLCACTSP 163
S+L ACT+P
Sbjct: 175 SSVLGACTTP 184
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ ++ C++ L VH + + DV +++ +++ Y K G L+ R V DEM
Sbjct: 173 TFSSVLGACTTPGMLT---AVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEM 229
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R DL WN+IIAG A + A+ LF M+D + T+ S+L ACT
Sbjct: 230 VTR------DLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACT 280
>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
Length = 1301
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 48/123 (39%), Positives = 69/123 (56%), Gaps = 6/123 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
ST +++ CSSL SLQ GRK H +L S + + + N ++ MY KCGS+ D+ + +
Sbjct: 300 STLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQ 359
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
I+ PD+ SWNA+IA A + A++ F EMR + PDG+T SLL AC
Sbjct: 360 ------IDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHA 413
Query: 164 SNV 166
V
Sbjct: 414 GKV 416
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 67 DHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVA 126
+++ ++V ++ Y K G + A+++ D++P R DLASWNA+I G A
Sbjct: 222 ENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCR------DLASWNAMITGYA 275
Query: 127 SPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ EA+ L S+M + PD T+ S+L AC+S
Sbjct: 276 QNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSS 311
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+V+ +++ Y K G +E AR + + MPQ+NV+ SW +I+G +EA +
Sbjct: 170 NVISYTAMVDGYAKIGEIEQARALFNCMPQKNVV------SWTVMISGYVENGKFDEAEN 223
Query: 137 LFSEMRDRELI 147
LF +M D+ ++
Sbjct: 224 LFEQMPDKNIV 234
Score = 40.8 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 15/63 (23%)
Query: 92 GSLEDARVVSDE-------MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
G +ED R+ DE MPQRN ASWNA+I+G+ EA LF EM R
Sbjct: 118 GCIEDERI--DEAWQYFQAMPQRNT------ASWNAMISGLVRYDRVEEASRLFEEMPRR 169
Query: 145 ELI 147
+I
Sbjct: 170 NVI 172
Score = 38.9 bits (89), Expect = 0.77, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
R+ H + S DV N + + G++ AR V DEMP R D SWN+II
Sbjct: 32 RQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQVFDEMPHR------DTVSWNSII 85
Query: 123 AGVASPSNANEAMSLFSEMRDRELI 147
G +E+ LF M + ++
Sbjct: 86 TGYWKNGCFDESKRLFGLMPTKNVV 110
Score = 38.5 bits (88), Expect = 0.90, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D V N I+ Y K G ++++ + MP +NV+ SWN++IAG +EA
Sbjct: 77 DTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVV------SWNSMIAGCIEDERIDEAWQ 130
Query: 137 LFSEMRDR 144
F M R
Sbjct: 131 YFQAMPQR 138
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 83/143 (58%), Gaps = 12/143 (8%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ LY++A+ FD +Q+ +RP Y ++ C+ SL GR VH +++ + +
Sbjct: 375 EGLYSDAIGLFDEMQSKG---VRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSN 431
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ + N ++NMY KCGS+E+AR+V ++P + D+ SWN +I G + NEA+ L
Sbjct: 432 LPVTNALINMYAKCGSVEEARLVFSKIPVK------DIVSWNTMIGGYSQNLLPNEALEL 485
Query: 138 FSEMRDRELIPDGLTVRSLLCAC 160
F +M+ ++ PD +T+ +L AC
Sbjct: 486 FLDMQ-KQFKPDDITMACVLPAC 507
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 52/143 (36%), Positives = 78/143 (54%), Gaps = 9/143 (6%)
Query: 20 QNLY-NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
QNL NEAL F L F+ T AC++ C+ L +L GR++H HIL D+
Sbjct: 475 QNLLPNEALELF--LDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDL 532
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ +++MY KCG L A+++ D +P++ DL SW +IAG NEA+S F
Sbjct: 533 HVACALVDMYAKCGLLVLAQLLFDMIPKK------DLISWTVMIAGYGMHGFGNEAISTF 586
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
+EMR + PD + ++L AC+
Sbjct: 587 NEMRIAGIEPDESSFSAILNACS 609
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 8/121 (6%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T ++ C+++ +L LGR +H + + +VV N +L+MY KCG+L A V +
Sbjct: 297 TTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVK 356
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL--CACT 161
M ++ SW +IIA ++A+ LF EM+ + + PD TV S++ CAC+
Sbjct: 357 MGDTTIV------SWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACS 410
Query: 162 S 162
S
Sbjct: 411 S 411
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 6/129 (4%)
Query: 29 AFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY 88
A + L + ++ + ++Y ++ C+ +SL+ G++VH I+S+ D L ++ MY
Sbjct: 80 AIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMY 139
Query: 89 GKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP 148
CG L R + D++ V WN +++ A N E++SLF +M+ ++
Sbjct: 140 VNCGDLVQGRKIFDKIMNDKVF------LWNLLMSEYAKIGNFRESVSLFKKMQKLGVVG 193
Query: 149 DGLTVRSLL 157
+ T +L
Sbjct: 194 NCYTFTCVL 202
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ C++ ++L ++ ++VH ++L + + N ++ Y K G +E A + DE+
Sbjct: 197 TFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDEL 256
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+ PD+ SWN++I G + + +F +M + D T+ S+L AC +
Sbjct: 257 SE------PDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIG 310
Query: 165 NV 166
N+
Sbjct: 311 NL 312
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 81/138 (58%), Gaps = 7/138 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
N AL AF +Q N R T C++S CS L +L++GR VH ++ + + ++ + N
Sbjct: 224 NRALEAFRGMQGE-NVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNA 282
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++NMY +CGS+++A+ V DEM R+VI ++N +I+G++ + +A+ LF M
Sbjct: 283 LINMYSRCGSIDEAQTVFDEMKDRDVI------TYNTMISGLSMNGKSRQAIELFRVMVG 336
Query: 144 RELIPDGLTVRSLLCACT 161
R L P +T +L AC+
Sbjct: 337 RRLRPTNVTFVGVLNACS 354
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 41 IRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I P Y A ++ C S +L+ GR+VH L + +++ I+ +YGKCG L DAR
Sbjct: 133 ILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDAR 192
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V +EMP+ V + D W A+I G N A+ F M+ + P+ T+ +L
Sbjct: 193 RVFEEMPEDVV--AKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLS 250
Query: 159 ACT 161
AC+
Sbjct: 251 ACS 253
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 65 VHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124
+H ++ + D + +L KC +++ A + +P++ + A+I G
Sbjct: 58 IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIF------QYTHNPNVYLYTALIDG 111
Query: 125 VASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
S N EA+ L+S M ++PD + S+L AC S
Sbjct: 112 FVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGS 149
>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g15510, chloroplastic; Flags: Precursor
gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 866
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 78/141 (55%), Gaps = 6/141 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
Q ++EA+ + + + T+ C++ TC + L G++VH H++ + D+
Sbjct: 173 QGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDID 232
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ N ++ MY KCG ++ AR++ D MP+R++I SWNA+I+G +E + LF
Sbjct: 233 VVNALITMYVKCGDVKSARLLFDRMPRRDII------SWNAMISGYFENGMCHEGLELFF 286
Query: 140 EMRDRELIPDGLTVRSLLCAC 160
MR + PD +T+ S++ AC
Sbjct: 287 AMRGLSVDPDLMTLTSVISAC 307
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
+L G+++H H+L + D L N +L+MY +CG + A Q N + D+ S
Sbjct: 513 ALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTA------WSQFNS-QKKDVTS 565
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
WN ++ G + + + LF M + PD +T SLLC C+ V
Sbjct: 566 WNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMV 614
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
+ + L+ C R+ + G KV+ LSS S V L N L M+ + G+L DA V
Sbjct: 92 VDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAFLAMFVRFGNLVDAWYV 151
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+M +RN L SWN ++ G A +EAM L+ M
Sbjct: 152 FGKMSERN------LFSWNVLVGGYAKQGYFDEAMCLYHRM 186
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T +IS C L +LGR +H +++++ D+ + N + MY GS +A + M
Sbjct: 299 TLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRM 358
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
E D+ SW +I+G ++A+ + M + PD +TV ++L AC +
Sbjct: 359 ------ERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLG 412
Query: 165 NV 166
++
Sbjct: 413 DL 414
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
++P T A ++S C++L L G ++H + ++ V++ N ++NMY KC ++ A
Sbjct: 394 VKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKAL 453
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+ +P++NVI SW +IIAG+ + EA+ +M+
Sbjct: 454 DIFHNIPRKNVI------SWTSIIAGLRLNNRCFEALIFLRQMK 491
>gi|255536747|ref|XP_002509440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549339|gb|EEF50827.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 678
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 76/133 (57%), Gaps = 8/133 (6%)
Query: 40 RIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
+IRP ++ C L++ C++L + + G++VH H+L D+ N ++NMY KCGS++DA
Sbjct: 537 KIRPDSFVCSSLLNACANLSAYEQGKQVHVHVLKFGFISDIFAGNSLVNMYAKCGSIDDA 596
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
E+P+R ++ SW+A+I G A + EA+ LF+ M + + P+ + V +
Sbjct: 597 DRAFSEIPERGIV------SWSAMIGGFAQHGHGKEALQLFNRMLEDGIPPNHMYVYDVP 650
Query: 158 CACTSPSNVLYLD 170
AC + +L+
Sbjct: 651 SACNPAILIAHLE 663
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 8/124 (6%)
Query: 41 IRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
IRP+ ++ C+I+ C+ L GRK+H +++ D+ N +++MY K G+LE+A
Sbjct: 235 IRPNEFSLSCMINACTGLEDSSQGRKIHGYLIKLAYDLDLFSANALVDMYAKVGTLEEAI 294
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V +E I PD+ SWNAIIAG A A+ LF +M + P+ T+ S L
Sbjct: 295 RVFEE------IAKPDIVSWNAIIAGCALREYHCWALELFGKMNRSGMCPNMFTISSALK 348
Query: 159 ACTS 162
AC
Sbjct: 349 ACAG 352
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 12/159 (7%)
Query: 10 RFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPST--YACLISTCSSLRSLQLGRKVHD 67
+F + P Q ++ + F +++NF P + Y+ L+ C++ ++ G+++H
Sbjct: 75 KFVNFIHNPAQINQHQNITTF----SSSNFHSTPISISYSNLLFQCTASKASTPGKEIHA 130
Query: 68 HILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127
++ D ++N ++N+Y KC + AR + DE + PDL SW+A+I+G +
Sbjct: 131 RVIKLGLSQDPKIRNLLINLYSKCQFFKYARKMVDESTE------PDLVSWSALISGYSQ 184
Query: 128 PSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
EA+S F EM + + T SLL ACTS +++
Sbjct: 185 NGFGKEAISAFYEMHLLGVKCNEFTFPSLLKACTSTTDM 223
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + ++ + +SL+ + ++H L S Q D + N +++ YGKCG ++DA + E
Sbjct: 443 TLSTVLKSVASLQVDHICSQIHALSLKSGFQFDNYVANSLIDTYGKCGRIKDATRIFQES 502
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P DL ++ ++I + EA+ L+ EM+DR++ PD SLL AC + S
Sbjct: 503 P------FVDLVAFTSMITAYSQDGQGEEALKLYLEMQDRKIRPDSFVCSSLLNACANLS 556
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + + C+ + +LGR++H +L + D L +++MY KC + DAR++ + M
Sbjct: 342 TISSALKACAGMGLKELGRQLHSSLLKMDIRSDSFLAVGLIDMYSKCDLMTDARLLFNLM 401
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P+R DL WNA I G + EA+SLF M + + +T+ ++L + S
Sbjct: 402 PER------DLIVWNAAITGHSQNGEDLEAVSLFPSMHKEGVGFNQITLSTVLKSVAS 453
>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
[Vitis vinifera]
Length = 707
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 4/119 (3%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P T ++S CS L S LGRK+H+ ++SSK D L+N I++MY KCG L+ A
Sbjct: 334 PVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAV---- 389
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
EM + D++SWN +I+G + EA+ LFS M+ + P+ +T S+L AC+
Sbjct: 390 EMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACS 448
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 9/115 (7%)
Query: 50 ISTCSSLRSLQLGR---KVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
IS S++ L GR VH + + + DV + N I+ MY KCG++E AR+V D M +
Sbjct: 237 ISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEE 296
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
RN I SWN++++G +A+SLF++M+ E P+ +T ++ AC+
Sbjct: 297 RNGI------SWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACS 345
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY ++ C+S G VH ++ + D+ ++ +++MY KCG + DA V D M
Sbjct: 134 TYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRM 193
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
R+V+ W A+I +A+ LF +M++ + D +T S+ A
Sbjct: 194 LIRDVV------CWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASA 242
>gi|125556054|gb|EAZ01660.1| hypothetical protein OsI_23695 [Oryza sativa Indica Group]
Length = 252
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 72/125 (57%), Gaps = 6/125 (4%)
Query: 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
R Y I+ C R+L GRKVH +++++ +P V L ++ MY +CG+L+DAR V
Sbjct: 9 RFHEYEAAITACIERRALWEGRKVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVL 68
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
D MP+R+V+ SW +I+G + EA+ LF +M IP+ T+ ++L +C+
Sbjct: 69 DRMPERSVV------SWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCS 122
Query: 162 SPSNV 166
P ++
Sbjct: 123 GPQSI 127
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 71/124 (57%), Gaps = 6/124 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++++CS +S+ G++VH ++ + + + + + +L+MY K ++++AR V D +
Sbjct: 113 TLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTL 172
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P+R+V+ S AII+G A EA+ LF ++ + + +T +L+ A + +
Sbjct: 173 PERDVV------SCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLA 226
Query: 165 NVLY 168
++ Y
Sbjct: 227 SLDY 230
>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 743
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 79/145 (54%), Gaps = 12/145 (8%)
Query: 20 QNLYNE-ALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
QN Y+E A+ F +Q N I P T +IS+C++L SL+ G + H L+S
Sbjct: 348 QNGYSEEAVRIFCDMQRN---EIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLIC 404
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
V + N ++ +YGKCGSLE A + EM R D SW A+++G A ANE +S
Sbjct: 405 FVTVSNALITLYGKCGSLEHAHQLFHEMKIR------DEVSWTALVSGYAQFGKANETIS 458
Query: 137 LFSEMRDRELIPDGLTVRSLLCACT 161
LF M ++PDG+T +L AC+
Sbjct: 459 LFETMLAHGIVPDGVTFVGVLSACS 483
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 75/141 (53%), Gaps = 7/141 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L+ EA+ F + F + T+ +++ C +L G+++H +I+ + Q ++ +
Sbjct: 249 GLFKEAVDKFKEM-GIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFV 307
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ +L+MY KC +++ A V +M +NVI SW A++ G + EA+ +F +
Sbjct: 308 GSALLDMYCKCRNVKYAEAVFRKMRHKNVI------SWTAMLVGYGQNGYSEEAVRIFCD 361
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M+ E+ PD T+ S++ +C
Sbjct: 362 MQRNEIHPDDFTLGSVISSCA 382
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 70/165 (42%), Gaps = 25/165 (15%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L +E++ ++ + + + + T++ ++ S+ + LGR++H I Q + +
Sbjct: 116 GLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFV 175
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVI-------------------------ESPDL 115
+ +++MY K G + DA + +E+P++N++ D
Sbjct: 176 GSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDS 235
Query: 116 ASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
SW II G+ EA+ F EM D T S+L AC
Sbjct: 236 ISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTAC 280
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y + C R+ +K+H I+ + + P+ L N ++N YGK G L++AR V D +P
Sbjct: 8 YTAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIP 67
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
Q P+L SWN +++ + + +F M + +++
Sbjct: 68 Q------PNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVV 103
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y LI+T L L+ R V DHI QP++ N +L+ Y K G L+D + V D MP
Sbjct: 43 YNNLINTYGKLGDLKNARNVFDHI----PQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMP 98
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+V+ SWN++++G A +E++ +++ M
Sbjct: 99 NHDVV------SWNSLLSGYAGNGLISESVRVYNMM 128
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 16/154 (10%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSS 72
N QP EAL F +Q F P+ Y LI C+ + L LGR +HD+ + +
Sbjct: 235 NQQP-----EEALELFKRMQAENIF---PNEYTMVSLIKACTEMGILTLGRGIHDYAIKN 286
Query: 73 KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNAN 132
+ V L +++MY KCGS++DA V + MP+++ L +WN++I +
Sbjct: 287 CIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKS------LPTWNSMITSLGVHGLGQ 340
Query: 133 EAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
EA++LFSEM + PD +T +LCAC NV
Sbjct: 341 EALNLFSEMERVNVKPDAITFIGVLCACVHIKNV 374
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L EAL F + + R T + ++ C+ +L+ G+ +HD ++ + +V +
Sbjct: 1331 GLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCV 1390
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
I++MY KCG +E A+ D M ++NV SW A++AG A EA+ +F +
Sbjct: 1391 GTSIIDMYCKCGRVEMAKKTFDRMKEKNV------KSWTAMVAGYGMHGRAKEALDIFYK 1444
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M + P+ +T S+L AC+
Sbjct: 1445 MVRAGVKPNYITFVSVLAACS 1465
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 77/149 (51%), Gaps = 15/149 (10%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL AF L+ R S++ C I +CS+L L GR H + D+ + + +
Sbjct: 1125 EALRAFSSLRKLGLIPTR-SSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSAL 1183
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF------ 138
++MY KCG L+DAR + DE+P RNV+ SW ++I G A+ A+ LF
Sbjct: 1184 IDMYSKCGQLKDARALFDEIPLRNVV------SWTSMITGYVQNEQADNALLLFKDFLEE 1237
Query: 139 -SEMRDRELIP-DGLTVRSLLCACTSPSN 165
+E+ D +P D + + S+L AC+ S
Sbjct: 1238 ETEVEDGNNVPLDSVVMVSVLSACSRVSG 1266
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 37/148 (25%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK-------------- 90
T+ +I C++ S+ LG+ VH ++ DV +QN +++ Y K
Sbjct: 127 TFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKM 186
Query: 91 -----------------CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
CG L++AR + DE+P +NV+ SW A+I G E
Sbjct: 187 RVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVV------SWTAMINGYIRNQQPEE 240
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACT 161
A+ LF M+ + P+ T+ SL+ ACT
Sbjct: 241 ALELFKRMQAENIFPNEYTMVSLIKACT 268
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 13/144 (9%)
Query: 24 NEALVAFDFLQNNT------NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
N L+ DFL+ T N + ++S CS + + VH ++
Sbjct: 1226 NALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGS 1285
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ + N +++ Y KCG ++ V D M +++ I SWN++IA A + EA+ +
Sbjct: 1286 IGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDI------SWNSMIAVYAQSGLSGEALEV 1339
Query: 138 FSEM-RDRELIPDGLTVRSLLCAC 160
F M R + + +T+ ++L AC
Sbjct: 1340 FHGMVRHVGVRYNAVTLSAVLLAC 1363
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 81/138 (58%), Gaps = 7/138 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
N AL AF +Q N R T C++S CS L +L++GR VH ++ + + ++ + N
Sbjct: 260 NRALEAFRGMQGE-NVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNA 318
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++NMY +CGS+++A+ V DEM R+VI ++N +I+G++ + +A+ LF M
Sbjct: 319 LINMYSRCGSIDEAQTVFDEMKDRDVI------TYNTMISGLSMNGKSRQAIELFRVMIG 372
Query: 144 RELIPDGLTVRSLLCACT 161
R L P +T +L AC+
Sbjct: 373 RRLRPTNVTFVGVLNACS 390
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 26/147 (17%)
Query: 41 IRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I P Y A ++ C S +L+ GR+VH L + +++ I+ +YGKCG L DAR
Sbjct: 143 ILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDAR 202
Query: 99 VVSDEMPQRNV------------------------IESPDLASWNAIIAGVASPSNANEA 134
V +EMP+ V + D W A+I G N A
Sbjct: 203 RVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRA 262
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCACT 161
+ F M+ + P+ T+ +L AC+
Sbjct: 263 LEAFRGMQGENVRPNEFTIVCVLSACS 289
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 81/138 (58%), Gaps = 7/138 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
N AL AF +Q N R T C++S CS L +L++GR VH ++ + + ++ + N
Sbjct: 260 NRALEAFRGMQGE-NVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNA 318
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++NMY +CGS+++A+ V DEM R+VI ++N +I+G++ + +A+ LF M
Sbjct: 319 LINMYSRCGSIDEAQTVFDEMKDRDVI------TYNTMISGLSMNGKSRQAIELFRVMVG 372
Query: 144 RELIPDGLTVRSLLCACT 161
R L P +T +L AC+
Sbjct: 373 RRLRPTNVTFVGVLNACS 390
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 26/147 (17%)
Query: 41 IRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I P Y A ++ C S +L+ GR+VH L + +++ I+ +YGKCG L DAR
Sbjct: 143 ILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDAR 202
Query: 99 VVSDEMPQRNV------------------------IESPDLASWNAIIAGVASPSNANEA 134
V +EMP+ V + D W A+I G N A
Sbjct: 203 RVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRA 262
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCACT 161
+ F M+ + P+ T+ +L AC+
Sbjct: 263 LEAFRGMQGENVRPNEFTIVCVLSACS 289
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 65 VHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124
+H ++ + D + +L KC +++ A + +P++ + A+I G
Sbjct: 68 IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIF------QYTHNPNVYLYTALIDG 121
Query: 125 VASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
S N EA+ L+S M ++PD + S+L AC S
Sbjct: 122 FVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGS 159
>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Glycine max]
Length = 595
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 79/142 (55%), Gaps = 10/142 (7%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L+NEA+ F L+ N + T+ ++ C L L LG+ +H + ++V+
Sbjct: 189 GLFNEAISLF--LRMNVEPNV--GTFVSILGACGKLGRLNLGKGIHGLVFKCLYGEELVV 244
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +L+MY KC S+ DAR + DEMP++++I SW ++I G+ + E++ LFS+
Sbjct: 245 CNAVLDMYMKCDSVTDARKMFDEMPEKDII------SWTSMIGGLVQCQSPRESLDLFSQ 298
Query: 141 MRDRELIPDGLTVRSLLCACTS 162
M+ PDG+ + S+L AC S
Sbjct: 299 MQASGFEPDGVILTSVLSACAS 320
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 62/112 (55%), Gaps = 6/112 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++S C+SL L GR VH++I + + DV + +++MY KCG ++ A+ + + MP +N
Sbjct: 314 VLSACASLGLLDCGRWVHEYIDCHRIKWDVHIGTTLVDMYAKCGCIDMAQRIFNGMPSKN 373
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ +WNA I G+A EA+ F ++ + P+ +T ++ AC
Sbjct: 374 I------RTWNAYIGGLAINGYGKEALKQFEDLVESGTRPNEVTFLAVFTAC 419
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ +C+ + R+ H + + D+ +QN ++++Y CG A V ++M
Sbjct: 111 TFPAVLKSCAKFSGIGEVRQFHSVSVKTGLWCDIYVQNTLVHVYSICGDNVGAGKVFEDM 170
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
R+V+ SW +I+G NEA+SLF M P+ T S+L AC
Sbjct: 171 LVRDVV------SWTGLISGYVKTGLFNEAISLFLRMNVE---PNVGTFVSILGAC 217
>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
Length = 667
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 9/138 (6%)
Query: 27 LVAFDFLQNNTNF-RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+V D + NT ++P T AC++ C+SL +L+ G+++H +IL + D + N
Sbjct: 275 MVVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANA 334
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++++Y KCG L AR++ D +P S DL SW +IAG NEA++ F+EMRD
Sbjct: 335 LVDLYVKCGVLGLARLLFDMIP------SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRD 388
Query: 144 RELIPDGLTVRSLLCACT 161
+ PD ++ S+L AC+
Sbjct: 389 AGIEPDEVSFISILYACS 406
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T ++ C+ +L LG+ VH + S + + N +L+MY KCG L+ A V ++
Sbjct: 114 ATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEK 173
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
M +RNV+ SW ++IAG ++ A+ L +M + D + + S+L AC
Sbjct: 174 MGERNVV------SWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHAC 224
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 27/116 (23%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ C+ SL G+ VHD+I ++ ++ + N +++MY KCGS+E A V M ++
Sbjct: 220 ILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKD 279
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+I SWN ++ EL PD T+ +L AC S S
Sbjct: 280 II------SWNTMVG---------------------ELKPDSRTMACILPACASLS 308
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 21/124 (16%)
Query: 51 STCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV- 109
+TC L+ GR+V D + + +V L N++++ Y K G +++ + M ++ +
Sbjct: 7 ATCGDLKE---GRRVFD----TMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIE 59
Query: 110 ---IESP----------DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
ES D+ SWN++I+G S + ++ +M + D T+ S+
Sbjct: 60 GKRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISV 119
Query: 157 LCAC 160
L C
Sbjct: 120 LVGC 123
>gi|242076522|ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
gi|241939380|gb|EES12525.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
Length = 766
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 75/127 (59%), Gaps = 11/127 (8%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP-----DVVLQNYILNMYGKCGSL 94
R+ P+ YA L++ CS LRSL GR VH H+L+S ++ + +L N+++ MYG+CG+
Sbjct: 39 RLSPAAYAALVAACSRLRSLPQGRLVHRHLLASSARDRFLAHNTILSNHLITMYGRCGAP 98
Query: 95 EDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVR 154
+ ARVV D M RN + SW A+IA A S +AM LFS M +PD +
Sbjct: 99 DSARVVFDGMLDRNPV------SWAAVIAAHAQNSRCADAMGLFSSMLRSGTMPDQFALG 152
Query: 155 SLLCACT 161
S +CAC+
Sbjct: 153 SAICACS 159
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 68/122 (55%), Gaps = 15/122 (12%)
Query: 46 YACLISTCSSL-RSLQLGRKVHDHILSSKSQPDVVLQNY----ILNMYGKCGSLEDARVV 100
+ + CS + SL+ G ++H +S K Q D +Y + +MY +C L+ AR V
Sbjct: 253 FGSVFRACSVVVNSLEYGEQIHG--VSVKYQLD--RNSYAGCSLSDMYARCNELDSARKV 308
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
IESPDL SWN++I ++ +EAM LFSEMRD L PDG+TV +LLCAC
Sbjct: 309 FYR------IESPDLVSWNSLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCAC 362
Query: 161 TS 162
Sbjct: 363 VG 364
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 11/102 (10%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
I CS L L LGR+VH + +S D+++QN ++ MY K GS+ D + +
Sbjct: 155 ICACSELGDLGLGRQVHAQAIKWESGSDLIVQNALVTMYSKSGSVGDGFALFER------ 208
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL 151
I DL SW +IIAG+A +A+ +F RE+I +G+
Sbjct: 209 IRDKDLISWGSIIAGLAQQGREMDALQIF-----REMIAEGV 245
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++S + L ++ ++VH + D +L N +++ Y KCGSL+DA + + M
Sbjct: 459 VLSASAELGYFEMVKQVHAYAFKVGLVGDAMLSNGLIDTYAKCGSLDDANKLFEIMGT-- 516
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
D+ SW+++I G A A EA+ LF+ MR+ + P+ +T +L AC+
Sbjct: 517 ---GRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLTACS 566
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 11/130 (8%)
Query: 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHI 69
+ N+ + L +EA+V F ++++ +RP T L+ C +L GR +H ++
Sbjct: 322 SLINAFSAKGLLSEAMVLFSEMRDSG---LRPDGITVMALLCACVGYDALHQGRSIHSYL 378
Query: 70 LSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPS 129
+ DV++ N +L+MY +C A V E R+V+ +WN+I+
Sbjct: 379 VKLGLGGDVIVSNSLLSMYARCLDFSSAMDVFHETHDRDVV------TWNSILTACVQHQ 432
Query: 130 NANEAMSLFS 139
+ + LFS
Sbjct: 433 HLEDVFKLFS 442
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 81/138 (58%), Gaps = 7/138 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
N AL AF +Q N R T C++S CS L +L++GR VH ++ + + ++ + N
Sbjct: 217 NRALEAFRGMQGE-NVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNA 275
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++NMY +CGS+++A+ V DEM R+VI ++N +I+G++ + +A+ LF M
Sbjct: 276 LINMYSRCGSIDEAQTVFDEMKDRDVI------TYNTMISGLSMNGKSRQAIELFRVMIG 329
Query: 144 RELIPDGLTVRSLLCACT 161
R L P +T +L AC+
Sbjct: 330 RRLRPTNVTFVGVLNACS 347
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 41 IRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I P Y A ++ C S +L+ GR+VH L + +++ I+ +YGKCG L DAR
Sbjct: 126 ILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDAR 185
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V +EMP+ V + D W A+I G N A+ F M+ + P+ T+ +L
Sbjct: 186 RVFEEMPEDVV--AKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLS 243
Query: 159 ACT 161
AC+
Sbjct: 244 ACS 246
>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
Length = 684
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Query: 36 NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
+ + P +Y CL C ++SL GR H+ + + P L+N +L MY KCGSL
Sbjct: 3 DAGISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLA 62
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
DAR V DEM +RN++ SWN II+ A ++ +FS M + E P+G T
Sbjct: 63 DARKVFDEMRERNLV------SWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIG 116
Query: 156 LLCACTSPSNV 166
L + +PS +
Sbjct: 117 FLRSLLNPSGL 127
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 7/145 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ EAL F+ L+ + I TY + CS+L G + H + S ++
Sbjct: 294 FEEALKTFESLRTRS-VDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGES 352
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++ MY +CG L+ A V + I+ PD +W AIIAG A NA EA+ LF M+
Sbjct: 353 AMITMYSRCGRLDYATRVFES------IDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQ 406
Query: 143 DRELIPDGLTVRSLLCACTSPSNVL 167
D + P+ +T ++L AC+ V+
Sbjct: 407 DCGVRPNAVTFIAVLTACSHSGLVI 431
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 36 NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
N + ++ ++ C+ L L GR++H HI+ + +V + +++ Y KC +LE
Sbjct: 205 NEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLE 264
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
A + I P+ SW+A+I G EA+ F +R R + + T S
Sbjct: 265 SATKAFE------WISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTS 318
Query: 156 LLCACTS 162
+ AC++
Sbjct: 319 IFQACSA 325
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Query: 29 AFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
F N +P STY + + + L++G+++H H + S + + I N
Sbjct: 95 GFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISN 154
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG LE A +V ++M ++N + +W I+ G +A++LF++M + +
Sbjct: 155 MYVKCGWLEGAELVFEKMSEKNAV------AWTGIMVGYTQAERQMDALALFAKMVNEGV 208
Query: 147 IPDGLTVRSLLCACTS 162
D +L AC
Sbjct: 209 ELDEYVFSIVLKACAG 224
>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 7/143 (4%)
Query: 20 QNLY-NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+N Y NEAL F+ L F T AC++ C+SL + GR++H +I+ + D
Sbjct: 324 KNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR 383
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N +++MY KCG+L A ++ D+ I S DL SW +IAG EA++LF
Sbjct: 384 HVANSLVDMYAKCGALLLAHMLFDD------IASKDLVSWTVMIAGYGMHGFGKEAIALF 437
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
++MR + D ++ SLL AC+
Sbjct: 438 NQMRQAGIEADEISFVSLLYACS 460
Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 81/148 (54%), Gaps = 12/148 (8%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ L EA+ F+ ++ I P Y +++ C+ R L G++VH+ I + D
Sbjct: 224 EGLAGEAVKLFEEMEEEG---ISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFD 280
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ + N +++MY KCGS+++A +V EM +++I SWN II G + ANEA+SL
Sbjct: 281 IFVSNALMDMYAKCGSMQEAELVFSEMRVKDII------SWNTIIGGYSKNCYANEALSL 334
Query: 138 FS-EMRDRELIPDGLTVRSLLCACTSPS 164
F+ + ++ PD TV +L AC S S
Sbjct: 335 FNLLLEEKRFSPDERTVACVLPACASLS 362
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
+ I +T + + C+ R + LGR VH + + + N +L+MY KCG L+
Sbjct: 139 SGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDS 198
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
A+ V EM R+V+ S+ ++IAG A A EA+ LF EM + + PD TV ++
Sbjct: 199 AKAVFREMSDRSVV------SYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAV 252
Query: 157 LCAC 160
L C
Sbjct: 253 LNCC 256
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++C+ + SSLRS+ G ++H IL S + N ++ Y K ++ AR V DEM
Sbjct: 46 TFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEM 105
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+R+VI SWN+II G S A + +S+F +M + D T+ S+ C
Sbjct: 106 TERDVI------SWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGC 155
>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1611
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
+++P T+A L+ CS L +L+ GR++H +I+ D + +++MY KCG++EDA
Sbjct: 1234 KVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDA 1293
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R + R + ASWNA+I G+A NA EA+ F M+ R ++PD +T +L
Sbjct: 1294 RGLFKRTNTRRI------ASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVL 1347
Query: 158 CACT 161
AC+
Sbjct: 1348 SACS 1351
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 8/148 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
EA A D + N R+ T+ +++ + L L+LG+++H ++ S V +
Sbjct: 914 GEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVG 973
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++NMY K GS+ AR V +M + DL SWN +I+G ++ +F +
Sbjct: 974 NCLINMYVKAGSVSRARSVFGQMNE------VDLISWNTMISGCTLSGLEECSVGMFVHL 1027
Query: 142 RDRELIPDGLTVRSLLCACTSPSNVLYL 169
L+PD TV S+L AC+S YL
Sbjct: 1028 LRDSLLPDQFTVASVLRACSSLEGGYYL 1055
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118
L LG++ H IL+S PD + N ++ MY KCGSL AR + D P N DL +W
Sbjct: 672 LSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTN----RDLVTW 727
Query: 119 NAIIAGVASPSN-ANEAMSLFSEMR 142
NAI++ +A+ ++ +++ LF +R
Sbjct: 728 NAILSALAAHADKSHDGFHLFRLLR 752
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 52 TCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIE 111
L L+ G+++H ++ D+ + + +L+MY KCG +E AR V E+P
Sbjct: 1147 AAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIP------ 1200
Query: 112 SPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
SPD +W +I+G A+ + +MR ++ PD T +L+ AC+
Sbjct: 1201 SPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACS 1250
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 11/135 (8%)
Query: 35 NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSL 94
+ T + P CL+S S +H + + Q DV + ++N+Y K G +
Sbjct: 757 STTRHTLAPVFKMCLLSASPSA-----SESLHGYAVKIGLQWDVFVAGALVNIYAKFGLI 811
Query: 95 EDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVR 154
+ARV+ D M R+V+ WN ++ EAM LFSE PD +T+R
Sbjct: 812 REARVLFDGMAVRDVV------LWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLR 865
Query: 155 SLLCACTSPSNVLYL 169
+L N+L L
Sbjct: 866 TLSRVVKCKKNILEL 880
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 45 TYACLISTCSSLRS-LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T A ++ CSSL L ++H + + D + ++++Y K G +E+A +
Sbjct: 1038 TVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVN 1097
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTV 153
+ DLASWNAI+ G + +A+ L+ M++ D +T+
Sbjct: 1098 Q------DGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITL 1141
>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
Length = 1198
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 48/123 (39%), Positives = 69/123 (56%), Gaps = 6/123 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
ST +++ CSSL SLQ GRK H +L S + + + N ++ MY KCGS+ D+ + +
Sbjct: 228 STLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQ 287
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
I+ PD+ SWNA+IA A + A++ F EMR + PDG+T SLL AC
Sbjct: 288 ------IDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHA 341
Query: 164 SNV 166
V
Sbjct: 342 GKV 344
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 67 DHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVA 126
+++ ++V ++ Y K G + A+++ D++P R DLASWNA+I G A
Sbjct: 150 ENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCR------DLASWNAMITGYA 203
Query: 127 SPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ EA+ L S+M + PD T+ S+L AC+S
Sbjct: 204 QNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSS 239
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+V+ +++ Y K G +E AR + + MPQ+NV+ SW +I+G +EA +
Sbjct: 98 NVISYTAMVDGYAKIGEIEQARALFNCMPQKNVV------SWTVMISGYVENGKFDEAEN 151
Query: 137 LFSEMRDRELI 147
LF +M D+ ++
Sbjct: 152 LFEQMPDKNIV 162
Score = 40.4 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 15/63 (23%)
Query: 92 GSLEDARVVSDE-------MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
G +ED R+ DE MPQRN ASWNA+I+G+ EA LF EM R
Sbjct: 46 GCIEDERI--DEAWQYFQAMPQRNT------ASWNAMISGLVRYDRVEEASRLFEEMPRR 97
Query: 145 ELI 147
+I
Sbjct: 98 NVI 100
Score = 38.5 bits (88), Expect = 0.99, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D V N I+ Y K G ++++ + MP +NV+ SWN++IAG +EA
Sbjct: 5 DTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVV------SWNSMIAGCIEDERIDEAWQ 58
Query: 137 LFSEMRDR 144
F M R
Sbjct: 59 YFQAMPQR 66
>gi|225443851|ref|XP_002267303.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
mitochondrial [Vitis vinifera]
Length = 533
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 72/124 (58%), Gaps = 7/124 (5%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
NFR ST+A +I CS L ++G++V ++ D+ + + +++MY KCG +EDA
Sbjct: 277 NFRPTMSTFASVIGACSVLTVFEIGQQVQSQLVKMNFYNDIKMGSALIDMYSKCGRIEDA 336
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR-DRELIPDGLTVRSL 156
R V D MP++NV SW ++I G N+NEA+ LFS M+ + + P+ +T S
Sbjct: 337 RRVFDHMPEKNVF------SWTSMIDGYGKNGNSNEALELFSRMQIECHVKPNYVTFLSA 390
Query: 157 LCAC 160
L AC
Sbjct: 391 LSAC 394
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 62 GRKVHDHILSSKSQP--DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
G+K+H HIL +P +V ++ IL++ +C L AR + DEM Q P L+++N
Sbjct: 61 GQKIHSHILKIGFEPNTNVSIKLLILHLKSRC--LRYARQLFDEMHQ------PTLSAYN 112
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
+I+G E ++L S + PDG T +L A S ++
Sbjct: 113 YMISGYLKHGQIEELLNLVSRLTFSYEKPDGFTFSMILKATGCASGGIF 161
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 48/140 (34%), Positives = 81/140 (57%), Gaps = 6/140 (4%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
L+ E L +F + + ++ +T ++S C+ L +L LG+ VH + SS + +V +
Sbjct: 310 LFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVG 369
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N +++MY KCG +E+A V M ++ DL SWN +I G+A S +A++LF +M
Sbjct: 370 NALMDMYAKCGIIENAISVFRGM------DTKDLISWNTLIGGLAMHSRGADALNLFFQM 423
Query: 142 RDRELIPDGLTVRSLLCACT 161
++ PDG+T +LCACT
Sbjct: 424 KNAGQKPDGITFIGILCACT 443
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 28/147 (19%)
Query: 28 VAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
V F F Q IRP+ T+ ++ +C + +L G +VH ++ + + + ++
Sbjct: 120 VVFLFFQMK-GMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLI 178
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIE----------SPDLAS---------------WNA 120
+MY G++ DA + EM +RNV+ S DL S WN
Sbjct: 179 DMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNI 238
Query: 121 IIAGVASPSNANEAMSLFSEMRDRELI 147
+++G + EA LF EM +R+++
Sbjct: 239 MVSGYIEGGDMVEARKLFHEMPNRDVM 265
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DV+ N +L Y G++E + +EMP+RN+ SWNA+I G A E +
Sbjct: 263 DVMFWNTVLKGYATNGNVEALEGLFEEMPERNIF------SWNALIGGYAHNGLFFEVLG 316
Query: 137 LFSEM-RDRELIPDGLTVRSLLCAC 160
F M + ++ P+ T+ ++L AC
Sbjct: 317 SFKRMLSESDVPPNDATLVTVLSAC 341
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DVVL N +++ Y + G + +AR + EMP R+V+ WN ++ G A+ N
Sbjct: 232 DVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVM------FWNTVLKGYATNGNVEALEG 285
Query: 137 LFSEMRDREL 146
LF EM +R +
Sbjct: 286 LFEEMPERNI 295
>gi|302816163|ref|XP_002989761.1| hypothetical protein SELMODRAFT_20442 [Selaginella moellendorffii]
gi|300142538|gb|EFJ09238.1| hypothetical protein SELMODRAFT_20442 [Selaginella moellendorffii]
Length = 749
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 50/140 (35%), Positives = 81/140 (57%), Gaps = 9/140 (6%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
NEALV +++ + + P TY L+ CS+L +L+ GR +H ++ S + +VV+
Sbjct: 247 NEALVLSQRMKD-SGATVVPDRVTYVILLHACSNLGALREGRMIHASVIVSGMESNVVVA 305
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
I+NMYGKCGS+ DA++V D+MP ++VI WN++I+ A A+ L++ M
Sbjct: 306 TAIVNMYGKCGSMGDAKMVFDKMPAKDVI------CWNSMISAYALNGLGKSALDLYARM 359
Query: 142 RDRELIPDGLTVRSLLCACT 161
R + PD T + L AC+
Sbjct: 360 RHSCVRPDAGTFVAALDACS 379
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 8/105 (7%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP T+ + CS L SL+ G+K+H I +SK + +V++ +++MYGKCG LE +
Sbjct: 364 VRPDAGTFVAALDACSVLNSLEDGKKIHAAISASKLEWNVMVATALVSMYGKCGCLERSI 423
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
V M RN+I SW A++ +A A+ LF+ MRD
Sbjct: 424 AVFRAMEVRNLI------SWTAMLGALAHNGRDAAALELFARMRD 462
Score = 69.3 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 13/135 (9%)
Query: 32 FLQNNTNFRIRPST--YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYG 89
F + F ++P Y C++ + L+ + + I + + L+N ++ MYG
Sbjct: 154 FRSIESAFGMKPGVEHYCCMVDVLGRAKHLE---EAEELIFKTGHDRETRLRNLLIQMYG 210
Query: 90 KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR--ELI 147
+CGSL DAR V D P P++ SWN ++A A ++NEA+ L M+D ++
Sbjct: 211 ECGSLIDARKVFDRTP------DPNIFSWNIMLAAYAHNGHSNEALVLSQRMKDSGATVV 264
Query: 148 PDGLTVRSLLCACTS 162
PD +T LL AC++
Sbjct: 265 PDRVTYVILLHACSN 279
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 8/103 (7%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQ--PDVVLQNYILNMYGKCGSLEDARVVSDEM 104
A L+ +C + L GR++H +L + Q DV L N +++MYGKCG L +AR V D
Sbjct: 2 ANLLRSCGNSGDLSAGRRIHKRVLDLQRQHGQDVFLLNLVIDMYGKCGGLGEARAVFD-- 59
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
IE P++ S+N +IA AS EA +F M R ++
Sbjct: 60 ----AIEHPNVFSFNILIASYASAGLLEEAWKIFHAMPGRNVV 98
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 41 IRP--STYACLISTCSSLRSLQLG--RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
+RP +T+A ++ C S+ + LG R +H ++ DV++ + ++ MY KCGSL D
Sbjct: 504 VRPDRNTFAAVLEACGSIGTAALGEGRMIHTQAIARACDTDVIVASALIAMYSKCGSLGD 563
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
A + E+ ++ + +IA A+ LF EM R L P+ +T SL
Sbjct: 564 AVAIFRELSRKRSV-----VLVTTMIAAYGHHGKLELALELFWEMAQRGLKPNRITFVSL 618
Query: 157 LCACTSPSNV 166
L +C++ +++
Sbjct: 619 LSSCSAANSL 628
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 83/143 (58%), Gaps = 8/143 (5%)
Query: 20 QNLY-NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
QN Y +E+L F+ ++ T + ++S C+ L +L+LGR+ H +++ S D+
Sbjct: 119 QNGYGDESLNVFNQMRK-TGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDI 177
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
V+ + +++MY K GS+EDA V D+MPQRN + SWN+II G A N+A+ LF
Sbjct: 178 VVGSALVDMYAKSGSMEDACQVFDKMPQRNEV------SWNSIITGCAQHGRGNDAVLLF 231
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
+M + P+ ++ +L AC+
Sbjct: 232 EQMLQAGIKPNEISFVGVLSACS 254
Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 43/147 (29%), Positives = 79/147 (53%), Gaps = 27/147 (18%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
++P+ T + ++ C+S+ SL+ G++ H++I+ + DVV+Q +++MY +CGSLEDA
Sbjct: 6 VKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAG 65
Query: 99 VVSDEMPQRNV-------------------------IESPDLASWNAIIAGVASPSNANE 133
V D+M +R+ + D+ SW A+IAG A +E
Sbjct: 66 HVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDE 125
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCAC 160
++++F++MR + D + S+L AC
Sbjct: 126 SLNVFNQMRKTGMKSDRFIMGSVLSAC 152
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/118 (38%), Positives = 71/118 (60%), Gaps = 7/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ C+ SL+ G+ VH++I + Q ++ + N +++MY KCGS+EDA V EM
Sbjct: 101 TITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEM 160
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P +++I SWN +I G + S NEA+SLF +M E+ PDG T+ +L AC S
Sbjct: 161 PVKDII------SWNTMIGGYSKNSLPNEALSLFGDMV-LEMKPDGTTLACILPACAS 211
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 12/143 (8%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+L NEAL F + ++P +T AC++ C+SL SL G++VH HIL + D
Sbjct: 179 SLPNEALSLF----GDMVLEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQ 234
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N +++MY KCG AR++ D +P + DL +W +IAG N A++ F
Sbjct: 235 QVANALVDMYVKCGVPVLARLLFDMIPTK------DLITWTVMIAGYGMHGFGNNAITTF 288
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
+EMR + PD ++ S+L AC+
Sbjct: 289 NEMRQAGIEPDEVSFISILYACS 311
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 8/113 (7%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ C++ + LGR VH + + N +L+MY KCG L+ A +V D M R
Sbjct: 4 ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCAC 160
V+ +W ++IA A ++EA+ LF EM DRE + PD T+ ++L AC
Sbjct: 64 VV------TWTSLIAAYAREGLSDEAIRLFHEM-DREGVSPDIFTITTVLHAC 109
>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 866
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 69/116 (59%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ C++ TC + L GR+VH H++ + D+ + N ++ MY KCG ++ AR++ D M
Sbjct: 198 TFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRM 257
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P+R++I SWNA+I+G +E + LF MR + PD +T+ S++ AC
Sbjct: 258 PRRDII------SWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISAC 307
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 6/98 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++S C++L L G ++H + ++ V++ N ++NMY KC ++ A + +
Sbjct: 400 TVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNI 459
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
P++NVI SW +IIAG+ + EA+ F +M+
Sbjct: 460 PRKNVI------SWTSIIAGLRLNNRCFEALIFFRQMK 491
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query: 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
+L G+++H H+L + D L N +L+MY +CG + A Q N + D++S
Sbjct: 513 ALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNIA------WNQFNS-QKKDVSS 565
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
WN ++ G + + + LF M + PD +T SLLC C
Sbjct: 566 WNILLTGYSERGQGSVVVELFDRMVKARVRPDEITFISLLCGC 608
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T +IS C L +LGR +H +++++ D+ + N + MY GS +A + M
Sbjct: 299 TLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRM 358
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ D+ SW +I+G +A+ + M + PD +TV ++L AC +
Sbjct: 359 ------DCKDIVSWTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACAT 410
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+ L+ C R+ + G KV+ LSS + V L N L M+ + G+L DA V +M
Sbjct: 97 FVALVRLCEWKRAHEEGSKVYSVALSSMNSLSVELGNAFLAMFVRFGNLVDAWYVFGKMS 156
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+RN L SWN ++ G A +EA+ L+ M
Sbjct: 157 ERN------LFSWNVLVGGYAKQGYFDEAICLYHRM 186
>gi|115468046|ref|NP_001057622.1| Os06g0472300 [Oryza sativa Japonica Group]
gi|113595662|dbj|BAF19536.1| Os06g0472300, partial [Oryza sativa Japonica Group]
Length = 397
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 74/132 (56%), Gaps = 8/132 (6%)
Query: 35 NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSL 94
F T ++ C+ L +L++GR+VH H+L K D++L N +L+MY KCGSL
Sbjct: 19 KEAGFLSNQGTLTSVLRACTGLVTLEVGRQVHAHVL--KYDKDLILHNALLDMYCKCGSL 76
Query: 95 EDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVR 154
+DA + MPQR+VI SW+ +I+G+A + EA+ +F M+ P+ +T+
Sbjct: 77 QDADALFGRMPQRDVI------SWSTMISGLAQNGRSIEALKVFDMMKSEGPRPNHITMV 130
Query: 155 SLLCACTSPSNV 166
+L AC+ V
Sbjct: 131 GVLFACSHAGLV 142
>gi|356557931|ref|XP_003547263.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Glycine max]
Length = 764
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 11/145 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPST--YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
++AL F + F ++ ST A +I+ C+ L S LG VH ++ + D+ Q
Sbjct: 351 DKALAVF---RQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGYMFRHELPMDIATQ 407
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++ M+ KCG L+ + +V D+M +RN L SWNA+I G A +A+ LF+EM
Sbjct: 408 NSLVTMHAKCGHLDQSSIVFDKMNKRN------LVSWNAMITGYAQNGYVCKALFLFNEM 461
Query: 142 RDRELIPDGLTVRSLLCACTSPSNV 166
R PD +T+ SLL C S +
Sbjct: 462 RSDHQTPDSITIVSLLQGCASTGQL 486
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 62/122 (50%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ CSSL LG +H IL S D + + ++N Y K G + AR V D M
Sbjct: 71 TFPSLLKACSSLNLFSLGLSLHQRILVSGLSLDAYIASSLINFYAKFGFADVARKVFDFM 130
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P+RNV+ W +II + EA SLF EMR + + P +T+ SLL + +
Sbjct: 131 PERNVVP------WTSIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTMLSLLFGVSELA 184
Query: 165 NV 166
+V
Sbjct: 185 HV 186
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T L+ C+S L LG+ +H ++ + +P +++ +++MY KCG L+ A+ ++M
Sbjct: 472 TIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDIAQRCFNQM 531
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P S DL SW+AII G A+ +S+ + + P+ + S+L +C+
Sbjct: 532 P------SHDLVSWSAIIVGYGYHGKGETALRFYSKFLESGMKPNHVIFLSVLSSCS 582
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 66/124 (53%), Gaps = 6/124 (4%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
F P T+ ++S +S L+LGR +H IL + D ++ ++ MY K G+++
Sbjct: 263 GFEPDPQTFGSVLSVAASRGELKLGRCLHGQILRTCFDLDAHVETSLIVMYLKGGNID-- 320
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
++ M +R++ D+ W A+I+G+ +A++A+++F +M + T+ S++
Sbjct: 321 --IAFRMFERSL--DKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKSSTATMASVI 376
Query: 158 CACT 161
AC
Sbjct: 377 TACA 380
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 14/140 (10%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
EA FD ++ I+PS T L+ S L +Q +H + D+ L N
Sbjct: 153 EAFSLFDEMRRQG---IQPSSVTMLSLLFGVSELAHVQC---LHGSAILYGFMSDINLSN 206
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+L+MYGKC ++E +R + D M QR DL SWN++++ A E + L MR
Sbjct: 207 SMLSMYGKCRNIEYSRKLFDYMDQR------DLVSWNSLVSAYAQIGYICEVLLLLKTMR 260
Query: 143 DRELIPDGLTVRSLLCACTS 162
+ PD T S+L S
Sbjct: 261 IQGFEPDPQTFGSVLSVAAS 280
>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 4/119 (3%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P T ++S CS L S LGRK+H+ ++SSK D L+N I++MY KCG L+ A
Sbjct: 303 PVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAV---- 358
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
EM + D++SWN +I+G + EA+ LFS M+ + P+ +T S+L AC+
Sbjct: 359 EMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACS 417
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY ++ C+S G VH ++ + D+ ++ +++MY KCG + DA V D M
Sbjct: 134 TYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRM 193
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
R+V+ W A+I +A+ LF +M++ + D +T S+ A
Sbjct: 194 LIRDVV------CWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASA 242
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 56 LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDL 115
L++L L RK+ + + + + + + ++ AR+V D M +RN I
Sbjct: 215 LKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNGI----- 269
Query: 116 ASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
SWN++++G +A+SLF++M+ E P+ +T ++ AC+
Sbjct: 270 -SWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACS 314
>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 583
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 72/128 (56%), Gaps = 8/128 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ PS T+ +I +C+ L +L++G+ VH H + S D +Q ++ Y KCG +E AR
Sbjct: 103 VSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGAR 162
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V D MP+++++ +WN++++G A+EA+ +F +MR+ PD T SLL
Sbjct: 163 QVFDRMPEKSIV------AWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLS 216
Query: 159 ACTSPSNV 166
AC V
Sbjct: 217 ACAQTGAV 224
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 8/147 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L +EA+ F + + F +T+ L+S C+ ++ LG VH +I+S +V L
Sbjct: 187 GLADEAIQVF-YQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKL 245
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
++N+Y +CG + AR V D+M + NV A+W A+I+ + +A+ LF++
Sbjct: 246 GTALINLYSRCGDVGKAREVFDKMKETNV------AAWTAMISAYGTHGYGQQAVELFNK 299
Query: 141 MRDR-ELIPDGLTVRSLLCACTSPSNV 166
M D IP+ +T ++L AC V
Sbjct: 300 MEDDCGPIPNNVTFVAVLSACAHAGLV 326
>gi|302817606|ref|XP_002990478.1| hypothetical protein SELMODRAFT_131937 [Selaginella moellendorffii]
gi|300141646|gb|EFJ08355.1| hypothetical protein SELMODRAFT_131937 [Selaginella moellendorffii]
Length = 281
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ I C+ L++L G+ +H I +S ++PD L+N +L+MYG+CGSL A + D+M
Sbjct: 43 TFMSAIDACADLQALLEGQILHAEITASGTEPDAYLRNALLHMYGRCGSLAMAESLFDDM 102
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P R D SWN +I+ A + +++ F+EM + PDG+T ++L AC+
Sbjct: 103 PDR------DRWSWNVMISSYAHAGHTRRSLAFFAEMALDGITPDGVTFVAVLGACSHAG 156
Query: 165 NV 166
V
Sbjct: 157 RV 158
>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 1047
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 89/164 (54%), Gaps = 20/164 (12%)
Query: 13 FYNSQPIQN--LYNEALVAFDFLQN-NTNFRI---------RPS--TYACLISTCSSLRS 58
F+ S +N L+N LVA+ L N N +F+I P+ TY ++ TCSSLR+
Sbjct: 429 FFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRA 488
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118
+ LG ++H +L + Q +V + + +++MY K G L+ A + + +++V+ SW
Sbjct: 489 VDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVV------SW 542
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
A+IAG A EA++LF EM+D+ + D + S + AC
Sbjct: 543 TAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAG 586
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 61/102 (59%), Gaps = 6/102 (5%)
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
+LG+++H I+ + + + N ++ +Y KCG+++DA EMP++N I SWN
Sbjct: 692 KLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEI------SWN 745
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
A++ G + + +A+SLF +M+ ++P+ +T +L AC+
Sbjct: 746 AMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACS 787
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+A IS C+ +++L G+++H S D+ + N ++++Y +CG + DA D+
Sbjct: 577 FASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDK-- 634
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
I S D SWN++I+G A + EA+SLFS+M
Sbjct: 635 ----IFSKDNISWNSLISGFAQSGHCEEALSLFSQM 666
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A L+S CSS+ +L +G++ H + + + D++L+ +L++Y KC ++ A
Sbjct: 374 TVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLST 433
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
NV+ WN ++ N NE+ +F++M+ + P+ T S+L C+S
Sbjct: 434 ETENVV------LWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSS 485
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P ++ ++S C+ + ++G ++H +L + + N ++ +Y + G+ A V +
Sbjct: 271 PYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFN 330
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
M QR D S+N++I+G++ +++A+ LF +M L PD +TV SLL AC+S
Sbjct: 331 AMLQR------DEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSS 384
Query: 163 PSNVL 167
+L
Sbjct: 385 VGALL 389
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 11/154 (7%)
Query: 7 TQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVH 66
T L + + N + N N F L R TY L+ C S G K+H
Sbjct: 37 TALSYAYSNDEGEANGIN-----FLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLH 91
Query: 67 DHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVA 126
IL +VVL ++++Y G L+ A V DEMP R L+ WN ++
Sbjct: 92 GKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVR------PLSCWNKVLHRFV 145
Query: 127 SPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ A + LF M ++ PD T +L C
Sbjct: 146 AGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGC 179
>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 7/143 (4%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
EA+ FD ++ T +T+ ++S C+ L + LG VH++I+ + +VVL
Sbjct: 194 KEAIGLFDRMKE-TGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTS 252
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++NMY +CG++ AR V D M +RNV+ +W A+I+G + ++A+ LF EMR
Sbjct: 253 LINMYIRCGNVSKAREVFDSMKERNVV------AWTAMISGYGTNGYGSQAVELFHEMRR 306
Query: 144 RELIPDGLTVRSLLCACTSPSNV 166
L P+ +T ++L AC V
Sbjct: 307 NGLFPNSITFVAVLSACAHAGLV 329
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 8/123 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ PS T+ +I +C+ L +L+ GR VH H+L DV +Q ++ +YGKCG L +AR
Sbjct: 107 VSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINAR 166
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V D++ +R+++ +WN++I+G A EA+ LF M++ + PD T S+L
Sbjct: 167 KVFDKIRERSIV------AWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLS 220
Query: 159 ACT 161
AC
Sbjct: 221 ACA 223
>gi|225456719|ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 529
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 80/137 (58%), Gaps = 12/137 (8%)
Query: 28 VAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
V++D +++N ++P+ T ++S CSSLR+L+ G+ VH ++ + + DV + N ++
Sbjct: 167 VSYDMVRSN----VKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEFDVFVHNALI 222
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+Y KCGS+ DA V MP RNV+ SW ++I G + + NEA+ F +M
Sbjct: 223 VVYSKCGSIRDAVQVFQLMPMRNVV------SWTSLINGYSDNNCPNEALGFFKQMEAEN 276
Query: 146 LIPDGLTVRSLLCACTS 162
+ PD +TV ++C C+
Sbjct: 277 IRPDEITVLGVVCMCSK 293
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 12/149 (8%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS---KSQPD 77
N NEAL F ++ N R T ++ CS LRS +LG + +++ K P
Sbjct: 260 NCPNEALGFFKQMEAE-NIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKIGLLKESPA 318
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ N +++M+ KCG++ A + D M ++ ++ SW +I G+A + A+
Sbjct: 319 IA--NALMDMHAKCGNINRACQIFDGMEEKTIV------SWTIMIQGLAMHGHGLSALVR 370
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNV 166
F +M+ PD L SLL AC+ V
Sbjct: 371 FCQMQREGFKPDSLVFLSLLSACSHAGLV 399
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EA++ ++ ++ ++ T +I C + G ++H I + +V++Q +
Sbjct: 62 EAILVYNHVRKK-GLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTAL 120
Query: 85 LNMYG----KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
LN+YG CG + + DEMPQR DL WNA+IA A + + + +
Sbjct: 121 LNLYGLFDEDCG----LQQIFDEMPQR------DLVMWNALIAAYAHGNCPYKVREVSYD 170
Query: 141 MRDRELIPDGLTVRSLLCACTS 162
M + P+G+T S+L C+S
Sbjct: 171 MVRSNVKPNGVTAVSILSVCSS 192
>gi|255575758|ref|XP_002528778.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531781|gb|EEF33600.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 518
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 78/145 (53%), Gaps = 6/145 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y E L FD + R ++ +++ C++ R L LG+ +H +I ++ + D +L
Sbjct: 331 YGECLKLFDRMIEERELRPNKASLMSVLTACANFRRLDLGKWIHSYIKDNEVESDELLST 390
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+L MY KCG ++ AR + +MP ++V+ SWN++I G A +A +A+ F EM
Sbjct: 391 ALLTMYAKCGMMDFARHIFTKMPHKSVV------SWNSMIMGYAINGHAEKALETFLEME 444
Query: 143 DRELIPDGLTVRSLLCACTSPSNVL 167
++P+ T S+L AC+ +L
Sbjct: 445 KSSMMPNAATFVSVLSACSHAELLL 469
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 12/104 (11%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ C+ + SL+ G+K H ++ + D ++N +L+MY CG + DAR+
Sbjct: 158 TFPLLVKVCADIGSLKEGQKAHACVVKFGFEFDAYVRNSLLHMYSACGRVLDARL----- 212
Query: 105 PQRNVIESP---DLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+ ES DL SWN++I G + A LF EM +R+
Sbjct: 213 ----LFESGFVLDLVSWNSMIIGYVKNGDIGLARELFDEMPERD 252
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 11/119 (9%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++ +IS ++ +K+ D++ S DVV N +++ Y K ++ AR + ++M
Sbjct: 255 SWNSMISGYVGAGDVEAAKKLFDNMPSR----DVVSWNCMIDGYAKIRNVSVARWLFNQM 310
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSLLCACTS 162
P RN++ SWN ++A N E + LF M +REL P+ ++ S+L AC +
Sbjct: 311 PFRNIV------SWNIMLALYLKCKNYGECLKLFDRMIEERELRPNKASLMSVLTACAN 363
>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Brachypodium distachyon]
Length = 877
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 69/118 (58%), Gaps = 6/118 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P + L++ C+SL + + G++VH H++ + DV N ++ Y KCGS+EDA +
Sbjct: 505 PFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFS 564
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+P++ V+ SW+A+I G+A + A+ +F M D + P+ +T+ S+LCAC
Sbjct: 565 GLPEKGVV------SWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCAC 616
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 65/115 (56%), Gaps = 6/115 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
++C+++ C+ R L+ GRKVH ++ + DV N +++MY K G + A VV ++P
Sbjct: 205 FSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVP 264
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ +V+ SWNA I+G + A+ L +M+ L+P+ T+ S+L AC
Sbjct: 265 ETDVV------SWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKAC 313
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + ++ C+ + LGR++H ++ + + D + +++MY K G L+DA+ V D +
Sbjct: 305 TLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWI 364
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
PQR DL WNA+I+G + + EA+SLF MR + T+ ++L + S
Sbjct: 365 PQR------DLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTAS 416
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 7/142 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ EAL F ++ F + +T A ++ + +SL ++ R+VH D + N
Sbjct: 385 HAEALSLFCRMRKE-GFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVN 443
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++ Y KC L A V ++ S D+ ++ ++I ++ + +A+ LF EM
Sbjct: 444 GLIDSYWKCDCLNYAYRVFEKH------GSYDIIAFTSMITALSQCDHGEDAIKLFMEML 497
Query: 143 DRELIPDGLTVRSLLCACTSPS 164
+ L PD + SLL AC S S
Sbjct: 498 RKGLDPDPFVLSSLLNACASLS 519
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T L++ ++ +SL G +H H+L KS V +N++L+ Y KC AR V DE+
Sbjct: 6 TIGPLLTRYAATQSLLQGAHIHAHLL--KSGLFAVFRNHLLSFYSKCRLPGSARRVFDEI 63
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
P P SW++++ ++ + +A+ F MR
Sbjct: 64 P------DPCHVSWSSLVTAYSNNAMPRDALGAFRSMR 95
Score = 43.9 bits (102), Expect = 0.026, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Query: 61 LGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP-QRNVIESPDLASWN 119
G ++H +++ D+ + N ++ MYG G +++AR+V DE +RN + SWN
Sbjct: 118 FGTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTV------SWN 171
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+++ + A+ +F EM + P+ ++ ACT ++
Sbjct: 172 GLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDL 218
>gi|302804045|ref|XP_002983775.1| hypothetical protein SELMODRAFT_118751 [Selaginella moellendorffii]
gi|300148612|gb|EFJ15271.1| hypothetical protein SELMODRAFT_118751 [Selaginella moellendorffii]
Length = 363
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ I C+ L++L G+ +H I +S ++PD L+N +L+MYG+CGSL A + D+M
Sbjct: 125 TFMSAIDACADLQALLEGQILHAEITASGTEPDAYLRNALLHMYGRCGSLAMAESLFDDM 184
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P R D SWN +I+ A + +++ F+EM + PDG+T ++L AC+
Sbjct: 185 PDR------DRWSWNVMISSYAHGGHTRRSLAFFAEMALDGITPDGVTFVAVLGACSHAG 238
Query: 165 NV 166
V
Sbjct: 239 RV 240
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 68 HILSSK----SQPD--VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
HIL ++ PD VV ++ Y + G L +AR + D MPQRNV ASWNA+
Sbjct: 41 HILEARRIFDKMPDKNVVSWTAMITGYIENGCLGEARRLFDAMPQRNV------ASWNAM 94
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I+G +A+ +F M + P+ +T S + AC
Sbjct: 95 ISGYVKNGRGWDALEIFKLMDLTGMHPNDITFMSAIDACA 134
>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
Length = 630
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 6/118 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
S +AC++STC+ + +L+ G ++H ++ + + N +L MY KCG++EDAR +E
Sbjct: 259 SAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEE 318
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
M +R+V+ SWN +IAG A EA+ +F MR PD +T+ +L AC+
Sbjct: 319 MEERDVV------SWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACS 370
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DV +++ Y + G LE+AR V D MP+RN + SWNA++A +EA
Sbjct: 129 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAV------SWNAMVAAYIQRRMMDEAKE 182
Query: 137 LFSEMRDREL 146
LF+ M R +
Sbjct: 183 LFNMMPCRNV 192
Score = 44.7 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+ +S+++ DV+ N +++ Y + G + +AR + D MP R+V+ SWN +++G A
Sbjct: 59 LFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVV------SWNIMVSGYARR 112
Query: 129 SNANEAMSLFSEMRDREL 146
+ EA LF R++
Sbjct: 113 GDMVEARRLFDAAPVRDV 130
Score = 43.9 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+V N +L Y + G LE+A+ V D MPQ+ D SW A++A + + E +
Sbjct: 191 NVASWNTMLTGYAQAGMLEEAKAVFDTMPQK------DAVSWAAMLAAYSQGGCSEETLQ 244
Query: 137 LFSEM 141
LF EM
Sbjct: 245 LFIEM 249
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY +IS+ ++ + L R H + D V N +L Y + G +E+AR + +
Sbjct: 8 TYNVMISSHANHGLVSLAR----HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR 63
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
+ +VI SWNA+++G +EA LF M R+++
Sbjct: 64 TEWDVI------SWNALMSGYVQWGKMSEARELFDRMPGRDVV 100
>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Brachypodium distachyon]
Length = 815
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 71/120 (59%), Gaps = 6/120 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+A + C+ R+L+ G+++H +L S PD L + +LNMY KCG L DAR V D MP
Sbjct: 53 HAAALQDCAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMP 112
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165
R D+ +W A+I+ + ++++A+ +F+ M + P+G T+ S+L AC+ S+
Sbjct: 113 HR------DIVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSH 166
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
EA ++ ++ IRPS T A +S CS + SL G ++H + S VV
Sbjct: 534 EEAEKVVEYFRSMLRENIRPSDATLAVSLSVCSDMASLGSGLQLHSWAIKSGWNSSVV-S 592
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+++MY KCG++ DA ++ E E+ D +WN II G + + +A+ F +M
Sbjct: 593 GALVDMYVKCGNIADAEMLFHES------ETRDQVAWNTIICGYSQHGHGYKALDAFKQM 646
Query: 142 RDRELIPDGLTVRSLLCACT 161
D PDG+T +L AC+
Sbjct: 647 VDEGKRPDGITFVGVLSACS 666
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
++ A A D + ++P+ Y + S L R VH +I+ S +
Sbjct: 331 HDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGDANLCRSVHAYIVKSGFAMLKGV 390
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ ILNMY K G+++DA V D +I PD SWN I++ S SN + + +F +
Sbjct: 391 GDAILNMYVKVGAVQDATVTFD------LIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQ 444
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNVLY 168
M + T S+L CTS N+ +
Sbjct: 445 MACEGFSANKYTYVSVLRCCTSLMNLRF 472
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
F TY ++ C+SL +L+ G +VH IL S Q D + +++MY + G A
Sbjct: 449 GFSANKYTYVSVLRCCTSLMNLRFGTQVHACILKSGLQNDTDVSRMLVDMYAQSGCFTSA 508
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+V +++ +R D SW I++G A A + + F M + P T+ L
Sbjct: 509 CLVFEQLKER------DAFSWTVIMSGYAKTEEAEKVVEYFRSMLRENIRPSDATLAVSL 562
Query: 158 CACT 161
C+
Sbjct: 563 SVCS 566
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
I T ++ C L + G+ VH ++ + D VL + ++ MY +C S E+A V
Sbjct: 250 ISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAYEV 309
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD 149
I+ PD+ +A+I+ A EA+ LF +M + P+
Sbjct: 310 FIR------IDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPN 352
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 8/115 (6%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A D I P+ T A ++ CS + +VH ++ D + + ++
Sbjct: 135 ALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQVHGQVVKLNGLDDPYVGSSLVE 194
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
Y CG L+ A V +P+R+ + SWNA++ G A + M + ++
Sbjct: 195 AYTSCGELDAAETVLLGLPERSDV------SWNALLNGYARHGDYRRVMIIIEKL 243
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 77/142 (54%), Gaps = 6/142 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
Q+ Y E + R+ ST+ +STC+ + +L+LG++VH ++ + +
Sbjct: 371 QSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCY 430
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ N +L MY KCG+++DA +V + IE ++ SWN +IAG A EA+ LF
Sbjct: 431 VGNALLVMYCKCGNIDDAYIVFEG------IEEKEVVSWNTMIAGYARHGFGKEALMLFE 484
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
M+ ++PD +T+ +L AC+
Sbjct: 485 SMKKTGILPDDVTMVGVLSACS 506
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++ +IS C R+L+ R + D + + DVV N +L+ Y + G +++A+ + DEM
Sbjct: 113 SWNVMISGCVRYRNLRAARLLFDQM----PERDVVSWNAMLSGYAQNGYVKEAKEIFDEM 168
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
P +N I SWN ++A +A LF D ELI
Sbjct: 169 PCKNSI------SWNGMLAAYVQNGRIEDARRLFESKADWELI 205
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++ Y + G + AR D MPQR+ I SW AIIAG A EA+ LF EM
Sbjct: 332 NTMITGYAQNGDIAQARNFFDRMPQRDSI------SWAAIIAGYAQSGYGEEALHLFVEM 385
Query: 142 -RDRE 145
RD E
Sbjct: 386 KRDGE 390
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 10/97 (10%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++ +IS C S L R++ + + + D+V N +++ + +L AR++ D+M
Sbjct: 82 SWNAMISGCLSNDKFYLARQLFEKMPTR----DLVSWNVMISGCVRYRNLRAARLLFDQM 137
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
P+R+V+ SWNA+++G A EA +F EM
Sbjct: 138 PERDVV------SWNAMLSGYAQNGYVKEAKEIFDEM 168
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+ SK+ +++ N ++ Y K L DAR + D MP+R D SWN +I+G A
Sbjct: 195 LFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPER------DEVSWNTMISGYAQN 248
Query: 129 SNANEAMSLFSE 140
EA LF E
Sbjct: 249 GELLEAQRLFEE 260
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DV +++ Y + G L++AR V D MP++N + SWNAIIAG ++A
Sbjct: 265 DVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSV------SWNAIIAGYVQCKRMDQARE 318
Query: 137 LFSEM 141
LF M
Sbjct: 319 LFEAM 323
>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 9/138 (6%)
Query: 27 LVAFDFLQNNTNF-RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+V D + NT ++P T AC++ C+SL +L+ G+++H +IL + D + N
Sbjct: 413 MVVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANA 472
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++++Y KCG L AR++ D +P S DL SW +IAG NEA++ F+EMRD
Sbjct: 473 LVDLYVKCGVLGLARLLFDMIP------SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRD 526
Query: 144 RELIPDGLTVRSLLCACT 161
+ PD ++ S+L AC+
Sbjct: 527 AGIEPDEVSFISILYACS 544
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T ++ C++ +L LG+ VH + S + + N +L+MY KCG L+ A V ++
Sbjct: 252 ATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEK 311
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
M +RNV+ SW ++IAG ++ A+ L +M + D + + S+L AC
Sbjct: 312 MGERNVV------SWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHAC 362
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
+ TY ++ C+ L+SL G+KVH I S+ D L +++ Y CG L++ R V
Sbjct: 97 LETKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRV 156
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
D M ++NV WN +++ A + E++ LF M ++
Sbjct: 157 FDTMEKKNVY------LWNFMVSEYAKIGDFKESICLFKIMVEK 194
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 27/116 (23%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ C+ SL G+ VHD+I ++ ++ + N +++MY KCGS+E A V M ++
Sbjct: 358 ILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKD 417
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+I SWN ++ EL PD T+ +L AC S S
Sbjct: 418 II------SWNTMVG---------------------ELKPDSRTMACILPACASLS 446
>gi|302759362|ref|XP_002963104.1| hypothetical protein SELMODRAFT_78378 [Selaginella moellendorffii]
gi|300169965|gb|EFJ36567.1| hypothetical protein SELMODRAFT_78378 [Selaginella moellendorffii]
Length = 542
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 44/131 (33%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 31 DFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90
+ +Q + ++ P Y C++ CSSL +L++GR+VH I+++ ++ L I+NMY K
Sbjct: 132 EMIQREESKKMDPVAYLCVLEACSSLSALKVGRQVHKEIVAAGFGDELPLAGAIVNMYCK 191
Query: 91 CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDG 150
CGSL +AR V D M RN+I +WN+++ G + A+ LF ++PD
Sbjct: 192 CGSLVEAREVFDGMKARNMI------AWNSMMGGYTQHGHPKRALQLFELACLDGVLPDE 245
Query: 151 LTVRSLLCACT 161
+T ++L AC+
Sbjct: 246 ITFVTILTACS 256
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 31/149 (20%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++ C+S++ L GR +H ++++K DVV+ N ++NMY KCG+L +AR EM
Sbjct: 12 TLAAVLGICASIKDLAGGRSIHGRVIAAKK--DVVIGNALVNMYSKCGALREARASFQEM 69
Query: 105 PQRNVIESPDL---------------------------ASWNAIIAGVASPSNANEAMSL 137
+ ++ + L SW ++IA S A + L
Sbjct: 70 LDKKLVVANTLIHTYGRCGSPSDARRVFDSLQRSARNAVSWASMIAAYTSNEQAKAGVEL 129
Query: 138 FSEMRDRELIP--DGLTVRSLLCACTSPS 164
+ EM RE D + +L AC+S S
Sbjct: 130 YQEMIQREESKKMDPVAYLCVLEACSSLS 158
>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic; Flags: Precursor
gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 7/143 (4%)
Query: 20 QNLY-NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+N Y NEAL F+ L F T AC++ C+SL + GR++H +I+ + D
Sbjct: 475 KNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR 534
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N +++MY KCG+L A ++ D+ I S DL SW +IAG EA++LF
Sbjct: 535 HVANSLVDMYAKCGALLLAHMLFDD------IASKDLVSWTVMIAGYGMHGFGKEAIALF 588
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
++MR + D ++ SLL AC+
Sbjct: 589 NQMRQAGIEADEISFVSLLYACS 611
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 81/148 (54%), Gaps = 12/148 (8%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ L EA+ F+ ++ I P Y +++ C+ R L G++VH+ I + D
Sbjct: 375 EGLAGEAVKLFEEMEEEG---ISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFD 431
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ + N +++MY KCGS+++A +V EM +++I SWN II G + ANEA+SL
Sbjct: 432 IFVSNALMDMYAKCGSMQEAELVFSEMRVKDII------SWNTIIGGYSKNCYANEALSL 485
Query: 138 FS-EMRDRELIPDGLTVRSLLCACTSPS 164
F+ + ++ PD TV +L AC S S
Sbjct: 486 FNLLLEEKRFSPDERTVACVLPACASLS 513
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
+ I +T + + C+ R + LGR VH + + + N +L+MY KCG L+
Sbjct: 290 SGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDS 349
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
A+ V EM R+V+ S+ ++IAG A A EA+ LF EM + + PD TV ++
Sbjct: 350 AKAVFREMSDRSVV------SYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAV 403
Query: 157 LCAC 160
L C
Sbjct: 404 LNCC 407
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++C+ + SSLRS+ G ++H IL S + N ++ Y K ++ AR V DEM
Sbjct: 197 TFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEM 256
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+R+VI SWN+II G S A + +S+F +M + D T+ S+ C
Sbjct: 257 TERDVI------SWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGC 306
Score = 43.5 bits (101), Expect = 0.031, Method: Composition-based stats.
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 19/163 (11%)
Query: 2 IRNLKTQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQL 61
+ + TQLR F S ++N A L + + I P T ++ C+ +SL+
Sbjct: 61 VTDANTQLR-RFCESGNLEN-------AVKLLCVSGKWDIDPRTLCSVLQLCADSKSLKD 112
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
G++V + I + D L + + MY CG L++A V DE+ + WN +
Sbjct: 113 GKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKAL------FWNIL 166
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+ +A + + ++ LF +M + G+ + S +C S S
Sbjct: 167 MNELAKSGDFSGSIGLFKKM-----MSSGVEMDSYTFSCVSKS 204
>gi|215713517|dbj|BAG94654.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222635568|gb|EEE65700.1| hypothetical protein OsJ_21333 [Oryza sativa Japonica Group]
Length = 382
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 74/132 (56%), Gaps = 8/132 (6%)
Query: 35 NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSL 94
F T ++ C+ L +L++GR+VH H+L K D++L N +L+MY KCGSL
Sbjct: 4 KEAGFLSNQGTLTSVLRACTGLVTLEVGRQVHAHVL--KYDKDLILHNALLDMYCKCGSL 61
Query: 95 EDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVR 154
+DA + MPQR+VI SW+ +I+G+A + EA+ +F M+ P+ +T+
Sbjct: 62 QDADALFGRMPQRDVI------SWSTMISGLAQNGRSIEALKVFDMMKSEGPRPNHITMV 115
Query: 155 SLLCACTSPSNV 166
+L AC+ V
Sbjct: 116 GVLFACSHAGLV 127
>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g56690, mitochondrial; Flags: Precursor
gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 704
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 8/137 (5%)
Query: 27 LVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
L A D +RPS + ++S C++L SLQ GR+VH H++ + DV + + +
Sbjct: 313 LEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVL 372
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+ MY KCG L A++V D +++I WN+II+G AS EA+ +F EM
Sbjct: 373 MTMYVKCGELVKAKLVFDRFSSKDII------MWNSIISGYASHGLGEEALKIFHEMPSS 426
Query: 145 ELIPDGLTVRSLLCACT 161
+P+ +T+ ++L AC+
Sbjct: 427 GTMPNKVTLIAILTACS 443
Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 26/154 (16%)
Query: 2 IRNLKTQLRFTFYNSQPIQNLY-----------NEALVAFDFLQNNTNFRIRPSTYACLI 50
++ LK LR T+ S + + NEA FD LQ F+ S + ++
Sbjct: 1 MKRLKLILRRTYLTSTGVNCSFEISRLSRIGKINEARKFFDSLQ----FKAIGS-WNSIV 55
Query: 51 STCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI 110
S S + R++ D + S+ +VV N +++ Y K + +AR V + MP+RNV+
Sbjct: 56 SGYFSNGLPKEARQLFDEM----SERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVV 111
Query: 111 ESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
SW A++ G EA SLF M +R
Sbjct: 112 ------SWTAMVKGYMQEGMVGEAESLFWRMPER 139
Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V+ N ++ +G+ G + AR V D M R D A+W +I EA+ L
Sbjct: 265 VIACNAMIVGFGEVGEISKARRVFDLMEDR------DNATWRGMIKAYERKGFELEALDL 318
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
F++M+ + + P ++ S+L C + +++ Y
Sbjct: 319 FAQMQKQGVRPSFPSLISILSVCATLASLQY 349
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N I++ Y G ++AR + DEM +RNV+ SWN +++G EA ++F M
Sbjct: 52 NSIVSGYFSNGLPKEARQLFDEMSERNVV------SWNGLVSGYIKNRMIVEARNVFELM 105
Query: 142 RDRELI 147
+R ++
Sbjct: 106 PERNVV 111
Score = 35.8 bits (81), Expect = 7.0, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
RK++D + DVV ++ + G +++AR++ DEM +RNV+ +W +
Sbjct: 160 ARKLYDMM----PVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVV------TWTTM 209
Query: 122 IAGVASPSNANEAMSLFSEMRDR 144
I G + + A LF M ++
Sbjct: 210 ITGYRQNNRVDVARKLFEVMPEK 232
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 83/146 (56%), Gaps = 11/146 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y EALV F ++ ++P T+ ++ CS L L+ G+++H+ I+ SK + + V+
Sbjct: 582 YLEALVIFTDMRKAG---VKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVV 638
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+L+MY KCG++++A + +++P+R D SW ++IA S A EA+ LF +
Sbjct: 639 MGALLDMYAKCGAVDEALHIFNQLPER------DFVSWTSMIAAYGSHGQAFEALKLFEK 692
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M+ + PD +T ++L AC+ V
Sbjct: 693 MQQSDAKPDKVTFLAILSACSHAGLV 718
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
++ E L F L + + TY ++ CS L + G+ VH H++ S DVV+
Sbjct: 277 IFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVM 336
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+ + MY KC EDA + DEMP+R D+ASWN +I+ +A+ LF EM
Sbjct: 337 SSAVGMYAKCNVFEDAIKLFDEMPER------DVASWNNVISCYYQDGQPEKALELFEEM 390
Query: 142 RDRELIPDGLTVRSLLCACT 161
+ PD +T+ +++ +C
Sbjct: 391 KVSGFKPDSVTLTTVISSCA 410
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 74/123 (60%), Gaps = 8/123 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
IRP+ T + ++ CS +LQLG+ +H +I+ ++ + D+ + + ++++Y KCG++ A
Sbjct: 496 IRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAE 555
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V MP+ NV+ SWN +I+G + EA+ +F++MR + PD +T S+L
Sbjct: 556 NVFQNMPKTNVV------SWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLP 609
Query: 159 ACT 161
AC+
Sbjct: 610 ACS 612
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 74/130 (56%), Gaps = 6/130 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
+ F+ T +IS+C+ L L+ G+++H ++ S D + + +++MYGKCG LE
Sbjct: 393 SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEM 452
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
A+ V +++ ++NV+ SWN++IAG + ++ + LF M + + P T+ S+
Sbjct: 453 AKEVFEQIQRKNVV------SWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSI 506
Query: 157 LCACTSPSNV 166
L AC+ N+
Sbjct: 507 LMACSRSVNL 516
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 11/125 (8%)
Query: 48 CL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
CL ++ S+L L LG+ +H I+S Q ++ L ++N+Y C + A++V
Sbjct: 199 CLARVTAGSALEEL-LGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVF---- 253
Query: 106 QRNVIESP-DLASWNAIIAGVASPSNANEAMSLFSEMRDRE-LIPDGLTVRSLLCACTSP 163
IE+P D+ WN ++A E + +F + L PD T S+L AC+
Sbjct: 254 --QTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGL 311
Query: 164 SNVLY 168
V Y
Sbjct: 312 GRVGY 316
>gi|56201767|dbj|BAD73217.1| hypothetical protein [Oryza sativa Japonica Group]
gi|56201874|dbj|BAD73324.1| hypothetical protein [Oryza sativa Japonica Group]
gi|125569384|gb|EAZ10899.1| hypothetical protein OsJ_00742 [Oryza sativa Japonica Group]
Length = 569
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++S C L +L+LGR++H H + ++ +++N ++NMY KCG + AR V D M
Sbjct: 288 TMATVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKVFDGM 347
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
R DL SWN+++AG +EA++LF++M + PDG+T ++L AC
Sbjct: 348 KTR------DLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDGVTFVAVLSAC 397
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 34/150 (22%)
Query: 45 TYACLISTCSSLRSLQL--GRKVHD-HILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
+ A +S C L L G+ +H ++ + + N ++ MYGK G ++DA+
Sbjct: 147 SMAVALSACPYAGDLALAKGKAIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAF 206
Query: 102 DEMPQRNVIE-------------------------------SPDLASWNAIIAGVASPSN 130
+ +N + +P++ SW+A+I G AS +
Sbjct: 207 RDATAKNTVTWNTLITSYAAARLCDKALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGD 266
Query: 131 ANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ A+ LF M+ + L P+ +T+ ++L AC
Sbjct: 267 TDRALELFRRMQQQWLSPNVVTMATVLSAC 296
Score = 37.4 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 58 SLQLGRKVHDHIL--SSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDL 115
S ++ VH H L +Q DV Q IL Y + G DAR V D MP
Sbjct: 23 SPRVASAVHAHALHLGLHAQHDVAGQ--ILAAYSRLGRAADARRVFDAMPPGRTT----- 75
Query: 116 ASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
WNA+I+ +S + + A F+ M PD +T +LL A
Sbjct: 76 FHWNALISAYSSGCDPDAARDAFARMAAAGARPDAVTWTALLSA 119
>gi|255568506|ref|XP_002525227.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535524|gb|EEF37193.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 420
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 72/123 (58%), Gaps = 7/123 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+ Y L C+ L+ G+ VH H+L+S+ + D+V+QN ILNMY KCG+L +AR V D+
Sbjct: 82 TLYHILFKKCTLFNKLKEGQLVHAHLLNSRFKHDLVIQNTILNMYAKCGNLGEARKVFDQ 141
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC-TS 162
MP ++V+ +W A+I G + +A+ LF +M P+ T+ SLL A S
Sbjct: 142 MPVKDVV------TWTALITGYSQHDRPKDALLLFPQMLTLGFRPNHFTLSSLLKASGVS 195
Query: 163 PSN 165
PS+
Sbjct: 196 PSD 198
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 8/136 (5%)
Query: 28 VAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
+AF F I+P+ TY+ ++S C+S+ SL+ G+ VH ++ S ++ + N +L
Sbjct: 266 LAFSFFSKMLRENIQPTQFTYSIVLSACASIGSLEQGKWVHALLIKSGAKLVDFVGNTLL 325
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
MY K GS+EDAR V D + +R+V+ SWN+++AG A N A+ +F +M
Sbjct: 326 GMYAKSGSIEDARKVFDGLVKRDVV------SWNSMLAGYAQHGLGNIALLIFRQMLIIG 379
Query: 146 LIPDGLTVRSLLCACT 161
+ P+ +T +L AC+
Sbjct: 380 VAPNDITFLCVLTACS 395
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
GR +H + +V + + +L+MY + G LE+A + D +P RN + SWNA+
Sbjct: 201 GRLLHAFCIKYGYSCNVYVGSALLDMYARSGHLEEALFIFDGLPSRNEV------SWNAL 254
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
IAG A + A S FS+M + P T +L AC S
Sbjct: 255 IAGCARKGDQELAFSFFSKMLRENIQPTQFTYSIVLSACAS 295
>gi|125524780|gb|EAY72894.1| hypothetical protein OsI_00769 [Oryza sativa Indica Group]
Length = 569
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++S C L +L+LGR++H H + ++ +++N ++NMY KCG + AR V D M
Sbjct: 288 TMATVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKVFDGM 347
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
R DL SWN+++AG +EA++LF++M + PDG+T ++L AC
Sbjct: 348 KTR------DLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDGVTFVAVLSAC 397
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+ V N ++ Y G ++A V +M Q +P++ SW+A+I G AS + + A+
Sbjct: 213 NTVTWNTLITSYAAAGLCDEALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTDRALE 272
Query: 137 LFSEMRDRELIPDGLTVRSLLCAC 160
LF M+ + L P+ +T+ ++L AC
Sbjct: 273 LFRRMQQQWLSPNVVTMATVLSAC 296
Score = 42.7 bits (99), Expect = 0.051, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 58 SLQLGRKVHDHIL--SSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDL 115
S ++ VH H L +Q DV Q IL Y + G DAR V D MP
Sbjct: 23 SPRVASAVHAHALHLGLHAQHDVAGQ--ILAAYSRLGRAADARRVFDAMPPGRTT----- 75
Query: 116 ASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
WNA+I+ +S + + A F+ M PD +T +LL A
Sbjct: 76 FHWNALISAYSSGCDPDAARDAFARMAAAGTRPDAVTWTALLSA 119
>gi|15221400|ref|NP_172104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174948|sp|Q9LND4.1|PPR14_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06140, mitochondrial; Flags: Precursor
gi|8810476|gb|AAF80137.1|AC024174_19 Contains similarity to a hypothetical protein F24K9.13 gi|6006885
from Arabidopsis thaliana gb|AC008153 and contains
multiple PPR PF|01535 repeats [Arabidopsis thaliana]
gi|332189825|gb|AEE27946.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 558
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 81/143 (56%), Gaps = 8/143 (5%)
Query: 26 ALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
A+ AFD + I P+ T A ++ +CSSL SL+ G+ VH +++ + + D V
Sbjct: 293 AVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTS 352
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++MY +CG+++ AR V D MP+RNVI SW+++I EA+ F +M+
Sbjct: 353 FIDMYARCGNIQMARTVFDMMPERNVI------SWSSMINAFGINGLFEEALDCFHKMKS 406
Query: 144 RELIPDGLTVRSLLCACTSPSNV 166
+ ++P+ +T SLL AC+ NV
Sbjct: 407 QNVVPNSVTFVSLLSACSHSGNV 429
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 7/131 (5%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHD-HILSSKSQPDVVLQNYILNMYGKC 91
L +T + T CL+ C ++ + ++G+ VH I S LQ I++MY KC
Sbjct: 200 LMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKC 259
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL 151
L++AR + + RNV+ W +I+G A A EA LF +M ++P+
Sbjct: 260 RLLDNARKLFETSVDRNVV------MWTTLISGFAKCERAVEAFDLFRQMLRESILPNQC 313
Query: 152 TVRSLLCACTS 162
T+ ++L +C+S
Sbjct: 314 TLAAILVSCSS 324
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
I C L L+ G +H + + D + ++ MY + G++E A+ V DE+P RN
Sbjct: 116 IKACVGLGLLENGILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNS 175
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ W ++ G S E LF MRD L D LT+ L+ AC
Sbjct: 176 V------LWGVLMKGYLKYSKDPEVFRLFCLMRDTGLALDALTLICLVKAC 220
>gi|296080850|emb|CBI18780.3| unnamed protein product [Vitis vinifera]
Length = 289
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 83/148 (56%), Gaps = 11/148 (7%)
Query: 26 ALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPD-VVLQN 82
L A D +Q + + P + Y+ L+ C+ L ++ GR VH H++ S + +VLQN
Sbjct: 71 GLYALDLIQRGS---LVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQN 127
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
I+NMY KCG L+DAR + DEMP +++ E SWNA+I+G A A+ L +M+
Sbjct: 128 IIVNMYAKCGCLDDARRMFDEMPTKDMSE----VSWNALISGHARKGEGEHALHLLWKMQ 183
Query: 143 DRELIPDGLTVRSLLCACTSPSNVLYLD 170
+ P T S+L A TS +L++D
Sbjct: 184 RKNFQPTHFTYSSVLSAYTSHV-LLFVD 210
>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
Length = 805
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 9/138 (6%)
Query: 27 LVAFDFLQNNTNF-RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+V D + NT ++P T AC++ C+SL +L+ G+++H +IL + D + N
Sbjct: 413 MVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANA 472
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++++Y KCG L AR++ D +P S DL SW +IAG NEA++ F+EMRD
Sbjct: 473 LVDLYVKCGVLGLARLLFDMIP------SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRD 526
Query: 144 RELIPDGLTVRSLLCACT 161
+ PD ++ S+L AC+
Sbjct: 527 AGIEPDEVSFISILYACS 544
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T ++ C++ +L LG+ VH + S + + N +L+MY KCG L+ A V ++
Sbjct: 252 ATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEK 311
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
M +RNV+ SW ++IAG ++ A+ L +M + D + + S+L AC
Sbjct: 312 MGERNVV------SWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHAC 362
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 27/116 (23%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ C+ SL G+ VHD+I ++ + ++ + N +++MY KCGS+E A V M ++
Sbjct: 358 ILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKD 417
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+I SWN +I EL PD T+ +L AC S S
Sbjct: 418 II------SWNTMIG---------------------ELKPDSRTMACVLPACASLS 446
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
+ TY ++ C+ L+S G+KVH I S+ D L +++ Y CG L++ R V
Sbjct: 97 LETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRV 156
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
D M ++NV WN +++ A + E++ LF M ++
Sbjct: 157 FDTMEKKNVY------LWNFMVSEYAKIGDFKESICLFKIMVEK 194
>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 755
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 70/121 (57%), Gaps = 6/121 (4%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
+ S +AC++STC+ + +L+ G ++H ++ + + N +L MY KCG++EDAR
Sbjct: 381 VNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNA 440
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+EM +R+V+ SWN +IAG A EA+ +F MR PD +T+ +L AC
Sbjct: 441 FEEMEERDVV------SWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAAC 494
Query: 161 T 161
+
Sbjct: 495 S 495
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DV +++ Y + G LE+AR V D MP+RN + SWNA++A +EA
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAV------SWNAMVAAYIQRRMMDEAKE 307
Query: 137 LFSEMRDREL 146
LF+ M R +
Sbjct: 308 LFNMMPCRNV 317
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+ +S+++ DV+ N +++ Y + G + +AR + D MP R+V+ SWN +++G A
Sbjct: 184 LFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVV------SWNIMVSGYARR 237
Query: 129 SNANEAMSLFSEMRDREL 146
+ EA LF R++
Sbjct: 238 GDMVEARRLFDAAPVRDV 255
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+V N +L Y + G LE+A+ V D MPQ+ D SW A++A + + E +
Sbjct: 316 NVASWNTMLTGYAQAGMLEEAKAVFDTMPQK------DAVSWAAMLAAYSQGGCSEETLQ 369
Query: 137 LFSEM 141
LF EM
Sbjct: 370 LFIEM 374
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY +IS+ ++ + L R H + D V N +L Y + G +E+AR + +
Sbjct: 133 TYNVMISSHANHGLVSLAR----HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR 188
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
+ +VI SWNA+++G +EA LF M R+++
Sbjct: 189 TEWDVI------SWNALMSGYVQWGKMSEARELFDRMPGRDVV 225
>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
Length = 739
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 70/121 (57%), Gaps = 6/121 (4%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
+ S +AC++STC+ + +L+ G ++H ++ + + N +L MY KCG++EDAR
Sbjct: 381 VNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNA 440
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+EM +R+V+ SWN +IAG A EA+ +F MR PD +T+ +L AC
Sbjct: 441 FEEMEERDVV------SWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAAC 494
Query: 161 T 161
+
Sbjct: 495 S 495
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DV +++ Y + G LE+AR V D MP+RN + SWNA++A +EA
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAV------SWNAMVAAYIQRRMMDEAKE 307
Query: 137 LFSEMRDREL 146
LF+ M R +
Sbjct: 308 LFNMMPCRNV 317
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+ +S+++ DV+ N +++ Y + G + +AR + D MP R+V+ SWN +++G A
Sbjct: 184 LFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVV------SWNIMVSGYARR 237
Query: 129 SNANEAMSLFSEMRDREL 146
+ EA LF R++
Sbjct: 238 GDMVEARRLFDAAPVRDV 255
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+V N +L Y + G LE+A+ V D MPQ+ D SW A++A + + E +
Sbjct: 316 NVASWNTMLTGYAQAGMLEEAKAVFDTMPQK------DAVSWAAMLAAYSQGGCSEETLQ 369
Query: 137 LFSEM 141
LF EM
Sbjct: 370 LFIEM 374
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY +IS+ ++ + L R H + D V N +L Y + G +E+AR + +
Sbjct: 133 TYNVMISSHANHGLVSLAR----HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR 188
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
+ +VI SWNA+++G +EA LF M R+++
Sbjct: 189 TEWDVI------SWNALMSGYVQWGKMSEARELFDRMPGRDVV 225
>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
Length = 755
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 70/121 (57%), Gaps = 6/121 (4%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
+ S +AC++STC+ + +L+ G ++H ++ + + N +L MY KCG++EDAR
Sbjct: 381 VNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNA 440
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+EM +R+V+ SWN +IAG A EA+ +F MR PD +T+ +L AC
Sbjct: 441 FEEMEERDVV------SWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAAC 494
Query: 161 T 161
+
Sbjct: 495 S 495
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DV +++ Y + G LE+AR V D MP+RN + SWNA++A +EA
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAV------SWNAMVAAYIQRRMMDEAKE 307
Query: 137 LFSEMRDREL 146
LF+ M R +
Sbjct: 308 LFNMMPCRNV 317
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+V N +L Y + G LE+A+ V D MPQ+ D SW A++A + + E +
Sbjct: 316 NVASWNTMLTGYAQAGMLEEAKAVFDTMPQK------DAVSWAAMLAAYSQGGCSEETLQ 369
Query: 137 LFSEM 141
LF EM
Sbjct: 370 LFIEM 374
Score = 42.7 bits (99), Expect = 0.050, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+ +S+++ D + N +++ Y + G + +AR + D MP R+V+ SWN +++G A
Sbjct: 184 LFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVV------SWNIMVSGYARR 237
Query: 129 SNANEAMSLFSEMRDREL 146
+ EA LF R++
Sbjct: 238 GDMVEARRLFDAAPVRDV 255
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY +IS+ ++ + L R H + D V N +L Y + G +E+AR + +
Sbjct: 133 TYNVMISSHANHGLVSLAR----HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR 188
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
+ + I SWNA+++G +EA LF M R+++
Sbjct: 189 TEWDAI------SWNALMSGYVQWGKMSEARELFDRMPGRDVV 225
>gi|242084152|ref|XP_002442501.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
gi|241943194|gb|EES16339.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
Length = 701
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 49/144 (34%), Positives = 82/144 (56%), Gaps = 8/144 (5%)
Query: 19 IQN-LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+QN L+ +A F ++ TN R STYA + C++L +L +GR++H ++ S D
Sbjct: 433 VQNGLFVDAFHHFMLMRRGTN-RADWSTYASCLRACANLAALHVGRQLHSLLVRSGHIND 491
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ +N +++ Y KCG + +A+ + DEM + D+ SWNA++ G AS EA+S+
Sbjct: 492 LFARNALISTYAKCGRMLEAKQIFDEMVGK------DIVSWNALVDGYASNGQGTEAISV 545
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F EM + PD +T +L AC+
Sbjct: 546 FREMEANGVRPDEVTFVGILSACS 569
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 14/118 (11%)
Query: 30 FDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYG 89
FD + + +F ++ ++S + L+L R V D + K N +++ Y
Sbjct: 103 FDRMPSRDDF-----SWTVMVSCYARAGELELARDVLDRMPGDKC---TACYNAMISGYA 154
Query: 90 KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
K G +DA + EMP +PDL SWN+ +AG+ A+ F EM +++++
Sbjct: 155 KNGRFDDAVKLLREMP------APDLFSWNSALAGLTQSGQMVRAVQFFDEMVEKDMV 206
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 12/91 (13%)
Query: 57 RSLQLG--RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPD 114
RS QL R++ D S + + V N +L+ + G +++AR + D MP RN +
Sbjct: 30 RSGQLAAARRLFD----SMPRRNTVTYNSMLSALARHGRIDEARALFDGMPSRNAV---- 81
Query: 115 LASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
SWNA+IA ++ +A LF M R+
Sbjct: 82 --SWNAMIAALSDHGRVADARGLFDRMPSRD 110
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
P+VV +LN Y + G + DAR + D MP+RNV+ + N ++ G S EA
Sbjct: 234 PNVVSWVTLLNGYCRAGRISDARDLFDRMPERNVV------ACNVMLDGYVRLSRLEEAC 287
Query: 136 SLFSEM 141
LF EM
Sbjct: 288 KLFDEM 293
Score = 38.9 bits (89), Expect = 0.68, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D V N +++ Y + G LE+A ++ MP + D SWN +IAG A +A+
Sbjct: 359 DTVCWNTMISGYVQRGMLEEAMLLFQRMPNK------DTVSWNTMIAGYAQGGQMRKAIG 412
Query: 137 LFSEMRDRELI 147
+F M + +
Sbjct: 413 IFRRMSRKNTV 423
>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 833
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 70/126 (55%), Gaps = 6/126 (4%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
I TY L C+ LR LG++V DHI+ Q ++ N ++ +Y CG++ +AR +
Sbjct: 55 IDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQI 114
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
D + + V+ +WNA+IAG A + EA +LF +M D L P +T S+L AC
Sbjct: 115 FDSVENKTVV------TWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDAC 168
Query: 161 TSPSNV 166
+SP+ +
Sbjct: 169 SSPAGL 174
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 8/134 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AF I+P TY +++ C+ +L R++H + + D+++ +++
Sbjct: 344 AFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVH 403
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG+++DAR V D MP+R+V+ SW+A+I EA F M+ +
Sbjct: 404 MYAKCGAIKDARQVFDAMPRRDVV------SWSAMIGAYVENGYGTEAFETFHLMKRSNI 457
Query: 147 IPDGLTVRSLLCAC 160
PDG+T +LL AC
Sbjct: 458 EPDGVTYINLLNAC 471
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 8/144 (5%)
Query: 19 IQNLY-NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
++N Y EA F ++ +N TY L++ C L +L +G +++ + +
Sbjct: 437 VENGYGTEAFETFHLMKR-SNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSH 495
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V L N ++ M K GS+E AR + D M +R+VI +WNA+I G + NA EA+ L
Sbjct: 496 VPLGNALIIMNAKHGSVERARYIFDTMVRRDVI------TWNAMIGGYSLHGNAREALYL 549
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F M P+ +T +L AC+
Sbjct: 550 FDRMLKERFRPNSVTFVGVLSACS 573
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AF+ ++P+ ++ ++ C + +L G+ VH +++ D+ + ++
Sbjct: 243 AFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIR 302
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY CGS+E AR V D M R+V+ SW +I G A N +A LF+ M++ +
Sbjct: 303 MYTTCGSIEGARRVFDNMKVRDVV------SWTVMIEGYAENGNIEDAFGLFATMQEEGI 356
Query: 147 IPDGLTVRSLLCACTSPSNV 166
PD +T ++ AC +N+
Sbjct: 357 QPDRITYMHIMNACAISANL 376
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AF + + + PS T+ ++ CSS L G++VH ++++ D + +++
Sbjct: 142 AFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVS 201
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY K GS++DAR V D + R D++++N ++ G A + +A LF M+ L
Sbjct: 202 MYVKGGSMDDARQVFDGLHIR------DVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGL 255
Query: 147 IPDGLTVRSLLCACTSP 163
P+ ++ S+L C +P
Sbjct: 256 KPNKISFLSILDGCWTP 272
Score = 38.9 bits (89), Expect = 0.73, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNY 83
EAL FD + FR T+ ++S CS + GR+ ++L + P V L
Sbjct: 545 EALYLFDRMLKE-RFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGC 603
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
++++ G+ G L++A ++ MP + P + W++++
Sbjct: 604 MVDLLGRAGELDEAELLIKSMPVK-----PTSSIWSSLL 637
>gi|297834310|ref|XP_002885037.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330877|gb|EFH61296.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 690
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 44/118 (37%), Positives = 68/118 (57%), Gaps = 6/118 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T ++ CS + +L G+++H IL SK +PDV L N +++MYGKCG +E +R V D
Sbjct: 331 ATLTTILPACSRVAALITGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGDVEYSRRVFDG 390
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
M + DL +WN I+ A N E ++LF M + + PDG+T +LL C+
Sbjct: 391 MLTK------DLTTWNTILNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCS 442
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 8/123 (6%)
Query: 41 IRPSTYACLIS--TCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I P ++ ++ C L+ L++GR +H I+ K + D V+ N +L +Y + GS +DAR
Sbjct: 225 IEPGNFSISVALKACVDLKDLRVGRGIHGQIVKRKEKVDQVVYNVLLKLYMERGSFDDAR 284
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V D M +RN++ +WN++I+ ++ +E +LF +M++ + T+ ++L
Sbjct: 285 KVFDGMSERNIV------TWNSLISILSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILP 338
Query: 159 ACT 161
AC+
Sbjct: 339 ACS 341
>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 52/147 (35%), Positives = 83/147 (56%), Gaps = 15/147 (10%)
Query: 19 IQNLYNEALVAFDFLQ---NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQ 75
+ N+ N + ++ L+ + NF TY L C+SLRS++ G ++H +I +
Sbjct: 63 VMNMENALFLYYEMLERGVESDNF-----TYPALFKACASLRSIEEGMQIHGYIFKRGLE 117
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
D+ +QN ++NMYGKCG +E + V + M +R D+ASW+AIIA AS +E +
Sbjct: 118 GDLFVQNSLINMYGKCGKIELSCSVFEHMDRR------DVASWSAIIAAHASLGMWSECL 171
Query: 136 SLFSEM-RDRELIPDGLTVRSLLCACT 161
S+F EM R+ P+ + S+L ACT
Sbjct: 172 SVFGEMSREGSCRPEESILVSVLSACT 198
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 72/139 (51%), Gaps = 6/139 (4%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+++E L F + + R S ++S C+ L +L LGR H +L + + +V++Q
Sbjct: 166 MWSECLSVFGEMSREGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQ 225
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+++MY KCG +E + M ++N + S++ +I G+A EA+ +FS+M
Sbjct: 226 TSLIDMYVKCGCIEKGLSLFQRMVKKNQL------SYSVMITGLAMHGRGMEALQVFSDM 279
Query: 142 RDRELIPDGLTVRSLLCAC 160
+ L PD + +L AC
Sbjct: 280 LEEGLKPDDVVYLGVLSAC 298
>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 9/138 (6%)
Query: 27 LVAFDFLQNNTNF-RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+V D + NT ++P T AC++ C+SL +L+ G+++H +IL + D + N
Sbjct: 413 MVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANA 472
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++++Y KCG L AR++ D +P S DL SW +IAG NEA++ F+EMRD
Sbjct: 473 LVDLYVKCGVLGLARLLFDMIP------SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRD 526
Query: 144 RELIPDGLTVRSLLCACT 161
+ PD ++ S+L AC+
Sbjct: 527 AGIEPDEVSFISILYACS 544
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T ++ C++ +L LG+ VH + S + + N +L+MY KCG L+ A V ++
Sbjct: 252 ATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEK 311
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
M +RNV+ SW ++IAG ++ A+ L +M + D + + S+L AC
Sbjct: 312 MGERNVV------SWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHAC 362
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
+ TY+ ++ C+ L+S G+KVH I S+ D L +++ Y CG L++ R V
Sbjct: 97 LETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRV 156
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
D M ++NV WN +++ A + E++ LF M ++
Sbjct: 157 FDTMEKKNVY------LWNFMVSEYAKIGDFKESICLFKIMVEK 194
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 27/116 (23%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ C+ SL G+ VHD+I ++ + ++ + N +++MY KCGS+E A V M ++
Sbjct: 358 ILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKD 417
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+I SWN +I EL PD T+ +L AC S S
Sbjct: 418 II------SWNTMIG---------------------ELKPDSRTMACVLPACASLS 446
>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
Length = 526
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 29 AFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AFDF + I P S+YA +I++CS L S+ GR++H ++ +V + + +++
Sbjct: 225 AFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALID 284
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG+++DAR+ D M +N++ +WN +I G A ++A+ LF M E
Sbjct: 285 MYAKCGNMDDARLFFDTMMMKNIV------AWNEMIHGYAQNGLGDKAVELFEYMLTTEQ 338
Query: 147 IPDGLTVRSLLCACT 161
PD +T ++L C+
Sbjct: 339 KPDAVTFIAVLTGCS 353
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 6/123 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T A ++S+CS L L GR+VH + D+ + + +++MY KCG + AR + ++
Sbjct: 141 TTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNK 200
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
M +R+V+ WN+II+G+ S EA F +MR+ ++P + S++ +C+
Sbjct: 201 MTERDVV------CWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRL 254
Query: 164 SNV 166
S++
Sbjct: 255 SSI 257
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D + N +++MY KC +++A V + +P ++ SWN +I G + +A+
Sbjct: 7 DQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIV------SWNILITGFGQEGSCAKAVE 60
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+ S M++ P+ +T +LL +C +V
Sbjct: 61 VLSLMQEAGFEPNEVTYSNLLASCIKARDV 90
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
AR V + I P + +WN +++G + + LF M+ + + PD T+ +
Sbjct: 87 ARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVI 146
Query: 157 LCACT 161
L +C+
Sbjct: 147 LSSCS 151
>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
Length = 518
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 29 AFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AFDF + I P S+YA +I++CS L S+ GR++H ++ +V + + +++
Sbjct: 209 AFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALID 268
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG+++DAR+ D M +N++ +WN +I G A ++A+ LF M E
Sbjct: 269 MYAKCGNMDDARLFFDTMMMKNIV------AWNEMIHGYAQNGLGDKAVELFEYMLTTEQ 322
Query: 147 IPDGLTVRSLLCACT 161
PD +T ++L C+
Sbjct: 323 KPDAVTFIAVLTGCS 337
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 6/123 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T A ++S+CS L L GR+VH + D+ + + +++MY KCG + AR + ++
Sbjct: 125 TTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNK 184
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
M +R+V+ WN+II+G+ S EA F +MR+ ++P + S++ +C+
Sbjct: 185 MTERDVV------CWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRL 238
Query: 164 SNV 166
S++
Sbjct: 239 SSI 241
Score = 35.4 bits (80), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
AR V + I P + +WN +++G + + LF M+ + + PD T+ +
Sbjct: 71 ARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVI 130
Query: 157 LCACT 161
L +C+
Sbjct: 131 LSSCS 135
>gi|297596280|ref|NP_001042300.2| Os01g0197500 [Oryza sativa Japonica Group]
gi|255672971|dbj|BAF04214.2| Os01g0197500 [Oryza sativa Japonica Group]
Length = 906
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++S C L +L+LGR++H H + ++ +++N ++NMY KCG + AR V D M
Sbjct: 625 TMATVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKVFDGM 684
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
R DL SWN+++AG +EA++LF++M + PDG+T ++L AC
Sbjct: 685 KTR------DLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDGVTFVAVLSAC 734
Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 34/150 (22%)
Query: 45 TYACLISTCSSLRSLQL--GRKVHD-HILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
+ A +S C L L G+ +H ++ + + N ++ MYGK G ++DA+
Sbjct: 484 SMAVALSACPYAGDLALAKGKAIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAF 543
Query: 102 DEMPQRNVIE-------------------------------SPDLASWNAIIAGVASPSN 130
+ +N + +P++ SW+A+I G AS +
Sbjct: 544 RDATAKNTVTWNTLITSYAAARLCDKALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGD 603
Query: 131 ANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ A+ LF M+ + L P+ +T+ ++L AC
Sbjct: 604 TDRALELFRRMQQQWLSPNVVTMATVLSAC 633
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 58 SLQLGRKVHDHIL--SSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDL 115
S ++ VH H L +Q DV Q IL Y + G DAR V D MP
Sbjct: 360 SPRVASAVHAHALHLGLHAQHDVAGQ--ILAAYSRLGRAADARRVFDAMPPGRTT----- 412
Query: 116 ASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
WNA+I+ +S + + A F+ M PD +T +LL A
Sbjct: 413 FHWNALISAYSSGCDPDAARDAFARMAAAGARPDAVTWTALLSA 456
>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic [Vitis vinifera]
Length = 704
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 71/119 (59%), Gaps = 6/119 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y+EAL F+ L+ N + + TY L+S C L+S++ +KV +++++S PD L+N
Sbjct: 111 YHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRN 170
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+L M+ KCG + DAR + DEMP++N++ SWN II G+ + EA LF M
Sbjct: 171 RVLLMHVKCGMMIDARRLFDEMPEKNIL------SWNTIIGGLVDAGDYFEAFRLFLMM 223
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 76/139 (54%), Gaps = 6/139 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y+E ++ + ++ +I T++ +I C+ L SL+ ++ H ++ D+V
Sbjct: 313 YSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANT 372
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++++Y K G +EDA+ V D MP +NVI SWNA+IAG + EA+ +F M
Sbjct: 373 ALVDLYSKWGRIEDAKHVFDMMPHKNVI------SWNALIAGYGNHGRGVEAVEMFERML 426
Query: 143 DRELIPDGLTVRSLLCACT 161
++P+ +T ++L AC+
Sbjct: 427 HEGMVPNHVTFLAVLSACS 445
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+ +I + L + GR++H L + DV + +++MY KCGS+EDA+ V D+MP
Sbjct: 235 FVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMP 294
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++ + WN+IIAG A + EA+S++ EMRD + D T ++ C
Sbjct: 295 EKTTV------GWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICA 344
>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
Length = 787
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 6/142 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
QN E VA L N + P T + +S C+ L +L LG+ VH I K + +V
Sbjct: 391 QNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVY 450
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ +++MY KCGS+ +AR + D M +NV+ SWNA+I+G EA+ L+
Sbjct: 451 VMTALIDMYAKCGSIAEARSIFDRMDNKNVV------SWNAMISGYGLHGQGAEALKLYK 504
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
+M D ++P T S++ AC+
Sbjct: 505 DMLDARILPTSSTFLSVIYACS 526
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 6/125 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
+ +R ST +I S L R +H ++ ++ D ++ + +Y + +E
Sbjct: 307 SGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMES 366
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
AR + D M ++ + SWNA+I+G A A++LF M++ + P+ +T+ S
Sbjct: 367 ARSIFDAMLEKT------MESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISST 420
Query: 157 LCACT 161
L AC
Sbjct: 421 LSACA 425
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 65/134 (48%), Gaps = 6/134 (4%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+EAL AF + + R +T A + + + +GR VH + + +
Sbjct: 193 SEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTG 252
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++++Y KCG ++ A+ + D M ++PDL ++NA+I+G + ++ LF E+
Sbjct: 253 LMSLYSKCGDMDSAQFLFDRM------DNPDLVAYNALISGYSVNGMVESSVELFKELTA 306
Query: 144 RELIPDGLTVRSLL 157
P+ T+ +++
Sbjct: 307 SGWRPNSSTLVAVI 320
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 11/106 (10%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
R +H +++ D + + + +Y K +DAR V D +P SPD WN +
Sbjct: 133 ARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVP------SPDTILWNTL 186
Query: 122 IAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCACTSPSNV 166
+AG+ +EA+ F M D + PD T+ S L A S++
Sbjct: 187 LAGLP----GSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHM 228
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 21/160 (13%)
Query: 11 FTFYNSQPIQNLYN----EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVH 66
F + P +N+ + EA + FD T ++S C+ L LG++VH
Sbjct: 201 FELFEKMPARNVVSWSTMEAGLKFD-----------DGTVISILSACAVSGLLGLGKRVH 249
Query: 67 DHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVA 126
I ++ + + N +++MY KCGSLE+A + M +++V+ SWNAII G+A
Sbjct: 250 ASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVV------SWNAIIQGLA 303
Query: 127 SPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+ +A+ LFS M+ +PD +T +LCACT V
Sbjct: 304 MHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFV 343
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 16/127 (12%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY L+ CS +++ +H + D+ + N +++ Y K G L +AR + DEM
Sbjct: 117 TYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKLGELGEARRLFDEM 176
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP----------DGLTVR 154
P+R D SWN I+ G N A LF +M R ++ D TV
Sbjct: 177 PER------DTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMEAGLKFDDGTVI 230
Query: 155 SLLCACT 161
S+L AC
Sbjct: 231 SILSACA 237
>gi|356537359|ref|XP_003537195.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g13770, mitochondrial-like
[Glycine max]
Length = 600
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 72/118 (61%), Gaps = 7/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY +++ S L +L G++VH+H+L S+ V+LQN +++MY KCG+L AR + D M
Sbjct: 229 TYTSVLTALSGLAALDHGKQVHNHLLCSEVPSFVILQNSLIDMYSKCGNLTYARRIFDTM 288
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR-ELIPDGLTVRSLLCACT 161
+R VI SWNA++ G + E + LF+ MRD ++ PD +TV ++L C+
Sbjct: 289 RERTVI------SWNAMLVGYSKHGERREVLELFNLMRDENKVKPDSVTVLAVLSGCS 340
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 56/96 (58%), Gaps = 6/96 (6%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y +++ C S R+ + G++VH H + + P V L ++ Y KC SL DAR V +EMP
Sbjct: 29 YNTVLNECVSKRAFKEGQRVHAHTIKTHYLPCVYLWTRLIVFYTKCDSLGDARHVLNEMP 88
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+RNV+ SW A+I+ + A++A+S+ ++
Sbjct: 89 ERNVV------SWTAMISAYSQRGYASQALSILVQI 118
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 61 LGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNA 120
L +H I+ + V + + +L+MY K G + +AR + + +P+R+V+ S A
Sbjct: 145 LREAIHSLIIKLNFKAHVYVGSSLLDMYAKDGKIHEARGIFECLPERDVV------SCTA 198
Query: 121 IIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
II+G A + +E + LF ++ + + +T S+L A
Sbjct: 199 IISGYAQL-DLDEELELFLRLQREGMXSNYVTYTSVLTA 236
>gi|297740478|emb|CBI30660.3| unnamed protein product [Vitis vinifera]
Length = 598
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 72/124 (58%), Gaps = 7/124 (5%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
NFR ST+A +I CS L ++G++V ++ D+ + + +++MY KCG +EDA
Sbjct: 277 NFRPTMSTFASVIGACSVLTVFEIGQQVQSQLVKMNFYNDIKMGSALIDMYSKCGRIEDA 336
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR-DRELIPDGLTVRSL 156
R V D MP++NV SW ++I G N+NEA+ LFS M+ + + P+ +T S
Sbjct: 337 RRVFDHMPEKNVF------SWTSMIDGYGKNGNSNEALELFSRMQIECHVKPNYVTFLSA 390
Query: 157 LCAC 160
L AC
Sbjct: 391 LSAC 394
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 62 GRKVHDHILSSKSQP--DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
G+K+H HIL +P +V ++ IL++ +C L AR + DEM Q P L+++N
Sbjct: 61 GQKIHSHILKIGFEPNTNVSIKLLILHLKSRC--LRYARQLFDEMHQ------PTLSAYN 112
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
+I+G E ++L S + PDG T +L A S ++
Sbjct: 113 YMISGYLKHGQIEELLNLVSRLTFSYEKPDGFTFSMILKATGCASGGIF 161
>gi|297734415|emb|CBI15662.3| unnamed protein product [Vitis vinifera]
Length = 657
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 71/119 (59%), Gaps = 6/119 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y+EAL F+ L+ N + + TY L+S C L+S++ +KV +++++S PD L+N
Sbjct: 111 YHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRN 170
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+L M+ KCG + DAR + DEMP++N++ SWN II G+ + EA LF M
Sbjct: 171 RVLLMHVKCGMMIDARRLFDEMPEKNIL------SWNTIIGGLVDAGDYFEAFRLFLMM 223
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 76/139 (54%), Gaps = 6/139 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y+E ++ + ++ +I T++ +I C+ L SL+ ++ H ++ D+V
Sbjct: 313 YSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANT 372
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++++Y K G +EDA+ V D MP +NVI SWNA+IAG + EA+ +F M
Sbjct: 373 ALVDLYSKWGRIEDAKHVFDMMPHKNVI------SWNALIAGYGNHGRGVEAVEMFERML 426
Query: 143 DRELIPDGLTVRSLLCACT 161
++P+ +T ++L AC+
Sbjct: 427 HEGMVPNHVTFLAVLSACS 445
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+ +I + L + GR++H L + DV + +++MY KCGS+EDA+ V D+MP
Sbjct: 235 FVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMP 294
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++ + WN+IIAG A + EA+S++ EMRD + D T ++ C
Sbjct: 295 EKTTV------GWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICA 344
>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
Length = 485
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 81/144 (56%), Gaps = 11/144 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ + EAL F +Q + + P A + ++ C++L +L G VH ++LS + +
Sbjct: 169 KGFHEEALAWFREMQISG---VNPDYVAIISAVAACTNLGALSFGLWVHRYVLSQDFRNN 225
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + N ++++Y +CG +E AR V D+M +R V+ SWN++I G A+ NANE++
Sbjct: 226 VRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVV------SWNSVIVGFAANGNANESLVY 279
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F +M+ PDG+T L AC+
Sbjct: 280 FRKMQREGFTPDGVTFTGALTACS 303
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118
L+ R V D+I S V N +++ Y + G +++A V D+MP R DL SW
Sbjct: 110 LRKARLVFDYIEDKNS----VTWNTMIDGYMRNGQVDNAVDVFDKMPDR------DLISW 159
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
A+I G EA++ F EM+ + PD + + S + ACT
Sbjct: 160 TAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIISAVAACT 202
>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
Length = 552
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 81/137 (59%), Gaps = 7/137 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F +Q + R+ S++ C +STCS++ +L+LGR++H ++ + Q + N +
Sbjct: 163 EALHFFVEMQRDCE-RLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNAL 221
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
L MY KCGS+++AR E+ +++V+ SWN +I G A EA+++F M+
Sbjct: 222 LAMYCKCGSIDEARDAFQEILEKDVV------SWNTMIHGYARHGFGEEALTVFELMKTT 275
Query: 145 ELIPDGLTVRSLLCACT 161
+ PD T+ S+L AC+
Sbjct: 276 GIRPDDATMVSVLAACS 292
Score = 42.0 bits (97), Expect = 0.083, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 11/80 (13%)
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDG 150
G + R + D MPQR+ I SW+A+IAG + + EA+ F EM RD E
Sbjct: 128 GFVRKRRNLFDNMPQRDSI------SWSAMIAGYSQNGCSEEALHFFVEMQRDCER---- 177
Query: 151 LTVRSLLCACTSPSNVLYLD 170
L S CA ++ SN+ L+
Sbjct: 178 LNRSSFTCALSTCSNIAALE 197
Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D+ N +L Y + L+ AR + + MP+R D+ SWNA+++G A +EA
Sbjct: 25 DLFSWNVMLTGYVRNRDLKTARALFERMPER------DIVSWNAMLSGYAQNGFVDEARE 78
Query: 137 LFSEMRDRELIPDGLTVRSLLCA 159
+F +M + +G++ LL A
Sbjct: 79 IFYKMP----LKNGISWNGLLAA 97
>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 727
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 49/144 (34%), Positives = 81/144 (56%), Gaps = 8/144 (5%)
Query: 19 IQNLYNE-ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+QN NE AL+ + ++ P T A ++ CSSL +L+LG++VH H + +
Sbjct: 399 VQNSDNEEALILYRRMKTAGIIPNDP-TMASVLKACSSLATLELGKQVHGHTIKHGFGLE 457
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + + + MY KCGSLED +V P ++V+ SWNA+I+G++ +EA+ L
Sbjct: 458 VPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVV------SWNAMISGLSHNGQGDEALEL 511
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F EM + PD +T +++ AC+
Sbjct: 512 FEEMLAEGMEPDDVTFVNIISACS 535
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 73/140 (52%), Gaps = 8/140 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
E+L A + I+PS Y + ++ CS + L+ G+++H +L + +
Sbjct: 302 ESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATT 361
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY K G L DAR D + +R D+A W ++I+G S+ EA+ L+ M+
Sbjct: 362 ALVDMYAKAGCLADARKGFDCLQER------DVALWTSLISGYVQNSDNEEALILYRRMK 415
Query: 143 DRELIPDGLTVRSLLCACTS 162
+IP+ T+ S+L AC+S
Sbjct: 416 TAGIIPNDPTMASVLKACSS 435
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 54 SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESP 113
S R+L GR VH I+ + + + N ++N Y KCG L A + N I
Sbjct: 25 SQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIF------NAIICK 78
Query: 114 DLASWNAIIAGVASP---SNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
D+ SWN++I G + S++ M LF EMR ++++P+ T+ + A +S
Sbjct: 79 DVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESS 130
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 10/147 (6%)
Query: 25 EALVAFD-FLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
EA+ F+ FL+ + ++S+ ++ + LGR++H + + V L N
Sbjct: 202 EAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNA 261
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++ MY KC SL +A + D RN I +W+A++ G + + EA+ LFS M
Sbjct: 262 LVTMYSKCESLNEACKMFDSSGDRNSI------TWSAMVTGYSQNGESLEAVKLFSRMFS 315
Query: 144 RELIPDGLTVRSLLCACTSPSNVLYLD 170
+ P T+ +L AC S++ YL+
Sbjct: 316 AGIKPSEYTIVGVLNAC---SDICYLE 339
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 41 IRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I P+ Y A + SSL+S +GR+ H ++ S D+ + ++ MY K G +ED
Sbjct: 114 ILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGL 173
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE-MRDRE 145
V MP+RN +W+ +++G A+ EA+ +F+ +R++E
Sbjct: 174 KVFAYMPERNTY------TWSTMVSGYATRGRVEEAIKVFNLFLREKE 215
>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
Length = 704
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 71/119 (59%), Gaps = 6/119 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y+EAL F+ L+ N + + TY L+S C L+S++ +KV +++++S PD L+N
Sbjct: 111 YHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRN 170
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+L M+ KCG + DAR + DEMP++N++ SWN II G+ + EA LF M
Sbjct: 171 RVLLMHVKCGMMIDARRLFDEMPEKNIL------SWNTIIGGLVDAGDYFEAFRLFLMM 223
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 76/139 (54%), Gaps = 6/139 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y+E ++ + ++ +I T++ +I C+ L SL+ ++ H ++ D+V
Sbjct: 313 YSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANT 372
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++++Y K G +EDA+ V D MP +NVI SWNA+IAG + EA+ +F M
Sbjct: 373 ALVDLYSKWGRIEDAKHVFDMMPHKNVI------SWNALIAGYGNHGRGVEAVEMFERML 426
Query: 143 DRELIPDGLTVRSLLCACT 161
++P+ +T ++L AC+
Sbjct: 427 HEGMVPNHVTFLAVLSACS 445
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+ +I + L + GR++H L + DV + +++MY KCGS+EDA+ V D+MP
Sbjct: 235 FVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMP 294
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++ + WN+IIAG A + EA+S++ EMRD + D T ++ C
Sbjct: 295 EKTTV------GWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICA 344
>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 86/152 (56%), Gaps = 13/152 (8%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
++ Y++AL AF + I P+ + + ++S C+ L L++G+ VH + +
Sbjct: 186 LEGRYDDALTAFIEARKEG---IEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVG 242
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
++ + + +++MYGKCGS+EDA DEMP+RN++ +WNA+I G A A+ A++
Sbjct: 243 NIFVGSALVDMYGKCGSIEDAERAFDEMPERNLV------TWNAMIGGYAHQGQADMAVT 296
Query: 137 LFSEMR--DRELIPDGLTVRSLLCACTSPSNV 166
LF EM + P+ +T +L AC+ +V
Sbjct: 297 LFDEMTCGSHRVAPNYVTFVCVLSACSRAGSV 328
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 12/162 (7%)
Query: 6 KTQLRFTFYNSQPIQN-LYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLG 62
++ + +T + +QN + AL F ++ ++ I+P+ T+ C SLRS +G
Sbjct: 71 RSVVTWTALIAGSVQNGRFTSALFHFSNMRRDS---IQPNDFTFPCAFKASGSLRSPLVG 127
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
++VH + + DV + +MY K G E+AR + DEMP+RN+ A+WNA +
Sbjct: 128 KQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNI------ATWNAYL 181
Query: 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+ ++A++ F E R + P V S+L AC S
Sbjct: 182 SNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLS 223
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP-DVVLQNYILNMYGKCGSLEDARV 99
+ P++ A L+ + S + +LGR H I+ + P + N+++NMY K A++
Sbjct: 4 LSPNSLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQL 63
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
+ P R+V+ +W A+IAG A+ FS MR + P+ T
Sbjct: 64 LLSLTPNRSVV------TWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFT 110
>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 647
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+ Y L+ C+ L L+ G+ VH H+L+S + D+V+QN +L MY +CGSLE AR + DE
Sbjct: 75 TLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDE 134
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
MP R D+ SW ++I G A A++A+ LF M P+ T+ SL+ C
Sbjct: 135 MPHR------DMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCC 185
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 74/138 (53%), Gaps = 7/138 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
EAL F +Q +R TY+ L+S+CSS+ L+ G+ +H H++ S + + N
Sbjct: 258 EEALALFVRMQRE-GYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNT 316
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+L+MY K GS+ DA V D++ + +V+ S N+++ G A EA F EM
Sbjct: 317 LLHMYAKSGSIRDAEKVFDKLVKVDVV------SCNSMLIGYAQHGLGKEAAQQFDEMIR 370
Query: 144 RELIPDGLTVRSLLCACT 161
+ P+ +T S+L AC+
Sbjct: 371 FGIEPNDITFLSVLTACS 388
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + L+ C + S GR++H +V + + +++MY +CG L +A +V D++
Sbjct: 177 TLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKL 236
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+N + SWNA+IAG A EA++LF M+ P T +LL +C+S
Sbjct: 237 GCKNEV------SWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSS 288
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 69/118 (58%), Gaps = 7/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQP-DVVLQNYILNMYGKCGSLEDARVVSDE 103
T ++S C L L LG +H + + K P V L+N I++MY KCGS++ A V
Sbjct: 492 TLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFST 551
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
MP+RN+I SWN +IAG A+ A +A+++F +MR+ P+ +T SLL AC+
Sbjct: 552 MPERNLI------SWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACS 603
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 25/141 (17%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S CS + +L++G++VH+ + + + L N +L+MY KC L DAR + D M
Sbjct: 360 TLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRM 419
Query: 105 PQRNVI----------ESPDLAS---------------WNAIIAGVASPSNANEAMSLFS 139
++V + DL S W+A+IAG + + E++ LF
Sbjct: 420 ATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFH 479
Query: 140 EMRDRELIPDGLTVRSLLCAC 160
EM +R ++P T+ S+L AC
Sbjct: 480 EMMERGVVPIEHTLVSVLSAC 500
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 68/142 (47%), Gaps = 8/142 (5%)
Query: 27 LVAFDFLQNNTNFRIR--PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
+ AF F R+ ++ + C ++ G V+ + +++++N +
Sbjct: 239 IFAFSFFVYMFQLRVEMDSRSFVFALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGL 298
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++ Y + G L++AR V DE ++V+ +W +I G A+ + EAM +F M
Sbjct: 299 IHFYAERGLLKNARQVFDESSDKDVV------TWTTMIDGYAAHDCSEEAMEVFELMLLS 352
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
+ P+ +T+ +++ AC+ N+
Sbjct: 353 HVEPNEVTLIAVVSACSDMGNL 374
>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Brachypodium distachyon]
Length = 805
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 88/167 (52%), Gaps = 15/167 (8%)
Query: 1 MIRNLKTQLRFTFYNSQ----PIQNLYNEALVAFDFLQNNTNFRIRP--STYACLISTCS 54
+I N T+ +NS I +L EA FDF + + P S+YA +I++C+
Sbjct: 472 IIFNRMTERDVVCWNSMISGLAIHSLNEEA---FDFFKQMRGNGMMPTESSYASMINSCA 528
Query: 55 SLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPD 114
L S+ GR++H I+ +V + + +++MY KCG+++DARV D M +N++
Sbjct: 529 RLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCMVTKNIV---- 584
Query: 115 LASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+WN +I G A +A+ LF M E PDG+T ++L C+
Sbjct: 585 --AWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCS 629
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 80/147 (54%), Gaps = 7/147 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
+ L+ + + F +Q+ N + +T A ++S+CS L L LG +VH + D+
Sbjct: 394 EELHQDTVELFRRMQHQ-NVQPDRTTLAVILSSCSRLGILDLGTQVHSASVRFLLHNDMF 452
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ + +++MY KCG + AR++ + M +R+V+ WN++I+G+A S EA F
Sbjct: 453 VASGLVDMYSKCGQIGIARIIFNRMTERDVV------CWNSMISGLAIHSLNEEAFDFFK 506
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNV 166
+MR ++P + S++ +C S+V
Sbjct: 507 QMRGNGMMPTESSYASMINSCARLSSV 533
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++S C ++ +L GR+ H + ++ ++N +L MY KCG +EDA + D M
Sbjct: 142 TLASVLSACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGM 201
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
SP+ S+ A++ G+ + ++A+ LF+ M + D + V S+L +C
Sbjct: 202 A------SPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCA 252
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+P+ N L+ + G L+ AR + DEMP RNV+ SWN +IA +A A EA
Sbjct: 71 RPNAYSYNAALSAARRAGDLDAARALLDEMPDRNVV------SWNTVIAALARSERAGEA 124
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ L+ M L+P T+ S+L AC +
Sbjct: 125 LELYEGMLREGLVPTHFTLASVLSACGA 152
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 67/139 (48%), Gaps = 14/139 (10%)
Query: 37 TNFRIRPSTYACLISTCSS--------LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY 88
+ R+ P + ++ +C+ +R+ +LG+ +H I+ D + N +++MY
Sbjct: 235 SGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMY 294
Query: 89 GKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP 148
KC +++A V D +P + + SWN +I G + +A+ + + M + P
Sbjct: 295 TKCMQMDEAVKVFDSLPNISTV------SWNILITGFGQAGSYAKALEVLNLMEESGSEP 348
Query: 149 DGLTVRSLLCACTSPSNVL 167
+ +T ++L +C +VL
Sbjct: 349 NEVTYSNMLASCIKARDVL 367
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 17/141 (12%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+EA+ FD L N I ++ LI+ S +V + + S S+P+ V +
Sbjct: 301 DEAVKVFDSLPN-----ISTVSWNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYS- 354
Query: 84 ILNMYGKCGSLED---ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
NM C D AR + D+ I P + +WN +++G + + LF
Sbjct: 355 --NMLASCIKARDVLSARAMFDK------ISRPSVTTWNTLLSGYCQEELHQDTVELFRR 406
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M+ + + PD T+ +L +C+
Sbjct: 407 MQHQNVQPDRTTLAVILSSCS 427
>gi|302814049|ref|XP_002988709.1| hypothetical protein SELMODRAFT_128498 [Selaginella moellendorffii]
gi|300143530|gb|EFJ10220.1| hypothetical protein SELMODRAFT_128498 [Selaginella moellendorffii]
Length = 573
Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 47/121 (38%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y+ ++ ++ LQ G+++H I+ S PDVV+ N ++N+Y KCG ++DAR + D M
Sbjct: 13 YSSVVGAYCAVGDLQRGQEIHRRIVDSGMTPDVVVHNSLVNLYAKCGRIDDARSLFDGMQ 72
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165
++ LASWNA+IAG A +EA LF + L PD LT +LL AC++P
Sbjct: 73 VKS------LASWNAMIAGYAHLDLGDEAFDLFRCIDLEGLGPDMLTFINLLGACSTPEF 126
Query: 166 V 166
V
Sbjct: 127 V 127
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++C+ + CS L+ L+ GR H I++S D V+ +++MYG+CGS+E AR D+M
Sbjct: 353 TFSCVATACSLLKDLRAGRAAHSRIVASGFDTDRVVVTALMDMYGRCGSVEAARRTFDDM 412
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+R D+ SWNA++ + EA+ LF EM + +++ +L ACT
Sbjct: 413 -RRRCSTRVDVVSWNAMMGLYSHHGQPREALELFGEMGLAGEAGNEVSLTLVLHACT 468
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ CS+ + GR +H + + ++VL +L+MY KCGS+E AR V M
Sbjct: 113 TFINLLGACSTPEFVDAGRNIHARVAALGLDSNLVLATALLDMYAKCGSIEGARSVFASM 172
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
++ + SWNA+IA + +EAM L+ +M + L P+ T S+L AC
Sbjct: 173 A-----DNKNQVSWNAMIAARVEYGHPDEAMYLYHQMHLQGLKPNAFTSASVLGAC 223
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 39 FRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP-----DVVLQNYILNMYGKCGS 93
F P L++ S L+ KV ++ P +VLQN I+NMY +CGS
Sbjct: 241 FEDDPVVRTALVNMYSKFGRLEEAAKVFADGQGFQNDPVAGHDSIVLQNSIINMYARCGS 300
Query: 94 LEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTV 153
L++AR D MP+R+V+ SWN +++G E++ L M + + P+ T
Sbjct: 301 LDEARACFDSMPRRSVV------SWNVLMSGYVEQQQGEESLKLVRCMDWQGIHPNAFTF 354
Query: 154 RSLLCACT 161
+ AC+
Sbjct: 355 SCVATACS 362
>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
Length = 803
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 29 AFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AFDF + I P S+YA +I++CS L S+ GR++H ++ +V + + +++
Sbjct: 502 AFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALID 561
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG+++DAR+ D M +N++ +WN +I G A ++A+ LF M E
Sbjct: 562 MYAKCGNMDDARLFFDTMMMKNIV------AWNEMIHGYAQNGLGDKAVELFEYMLTTEQ 615
Query: 147 IPDGLTVRSLLCACT 161
PD +T ++L C+
Sbjct: 616 KPDAVTFIAVLTGCS 630
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 6/123 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T A ++S+CS L L GR+VH + D+ + + +++MY KCG + AR + ++
Sbjct: 418 TTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNK 477
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
M +R+V+ WN+II+G+ S EA F +MR+ ++P + S++ +C+
Sbjct: 478 MTERDVV------CWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRL 531
Query: 164 SNV 166
S++
Sbjct: 532 SSI 534
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++S C L +L GR+ H + + ++N +L MY KCGS+ DA + M
Sbjct: 143 TLASVLSACGGLAALGDGRRCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGM 202
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ P+ S+ A++ G+A + ++A+ LF+ M + D ++V S+L AC
Sbjct: 203 AR------PNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACA 253
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 54 SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESP 113
S R+ +LG+ +H ++ D + N +++MY KC +++A V + +P ++
Sbjct: 261 SVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIV--- 317
Query: 114 DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
SWN +I G + +A+ + S M++ P+ +T +LL +C +V
Sbjct: 318 ---SWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDV 367
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVA-SPSNANEAMSLFSE 140
N L+ + G L+ AR + MP+RN + SWN +I+ +A SP + EA+ ++
Sbjct: 78 NAALSAACRAGDLDAARDLLGGMPRRNAV------SWNTVISALARSPGDGGEAVEMYGR 131
Query: 141 MRDRELIPDGLTVRSLLCAC 160
MR L+P T+ S+L AC
Sbjct: 132 MRAEGLLPTHFTLASVLSAC 151
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 7/160 (4%)
Query: 7 TQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVH 66
TQ F N +EA++ ++ + +I TY+ L+ C ++L G ++H
Sbjct: 69 TQRANAFLNRLSKAGQLSEAMLVL-LSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIH 127
Query: 67 DHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVA 126
+HI SK QPD+ + N +++MY KCG+ A+ + DEMP + D+ SWN ++ G
Sbjct: 128 NHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDK------DVYSWNLLLGGYV 181
Query: 127 SPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
EA L +M + PD T +L AC NV
Sbjct: 182 QHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNV 221
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 75/140 (53%), Gaps = 8/140 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+ E AFD+ + ++P T+ L++ C+S +L GR++H I + DVV+
Sbjct: 587 HGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVV 646
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+++MY KCGS++DA +V +P++NV SW ++I G A EA+ LF +
Sbjct: 647 GTGLISMYTKCGSIDDAHLVFHNLPKKNVY------SWTSMITGYAQHGRGKEALELFCQ 700
Query: 141 MRDRELIPDGLTVRSLLCAC 160
M+ + PD +T L AC
Sbjct: 701 MQQEGVKPDWITFVGALSAC 720
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 11/143 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y+ A+ F L I+P ST+ +++ C S +L+LG+ V I+ + + D+ +
Sbjct: 489 YDNAVATFQALLKEG---IKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHI 545
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+N +++M+ CG L A + ++MP+R DL SWN IIAG A F
Sbjct: 546 RNALVSMFVNCGDLMSAMNLFNDMPER------DLVSWNTIIAGFVQHGENQFAFDYFKM 599
Query: 141 MRDRELIPDGLTVRSLLCACTSP 163
M++ + PD +T LL AC SP
Sbjct: 600 MQESGVKPDQITFTGLLNACASP 622
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 8/137 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AF F I P+ T+ ++ CS +L+ GR++HD I+ + D ++ +L+
Sbjct: 391 AFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLS 450
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCGSL DAR V + + ++NV+ +WNA+I + A++ F + +
Sbjct: 451 MYAKCGSLMDARNVFERISKQNVV------AWNAMITAYVQHEKYDNAVATFQALLKEGI 504
Query: 147 IPDGLTVRSLLCACTSP 163
PD T S+L C SP
Sbjct: 505 KPDSSTFTSILNVCKSP 521
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 6/119 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+ L+ C+ +L+ G++VH + ++ + +L+MY KCGS+EDA V + +
Sbjct: 309 FVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVK 368
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
RNV+ SW A+IAG A EA F++M + + P+ +T S+L AC+ PS
Sbjct: 369 GRNVV------SWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPS 421
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 6/119 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +++ C+ +++ G ++ IL++ D+ + ++NM+ KCG ++DA V + +
Sbjct: 207 TFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNL 266
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
P+R DL +W ++I G+A +A +LF M + + PD + SLL AC P
Sbjct: 267 PRR------DLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHP 319
>gi|297851320|ref|XP_002893541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339383|gb|EFH69800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 520
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 71/125 (56%), Gaps = 6/125 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
+F ST+A +I CS L ++G++VH I+ S + + + +L+MY KCG ++D
Sbjct: 267 ASFHPNISTFASVIGACSVLTCHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGIDD 326
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
AR V D+M ++NV SW ++I G N EA+ LF+ M++ + P+ +T +
Sbjct: 327 ARRVFDQMQEKNVF------SWTSMIDGYGKNGNPEEALELFTRMKEFHIEPNYVTFLGV 380
Query: 157 LCACT 161
L AC+
Sbjct: 381 LSACS 385
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
+ G+K+H I+ + PD+ + +L ++ KCG L AR V DE+P+ P L+++N
Sbjct: 51 KAGQKIHADIIKTGFIPDLNISIKLLILHLKCGCLSYARQVFDELPK------PTLSAYN 104
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS-PSNVL 167
+I+G E + L + DG T+ +L A S SN+L
Sbjct: 105 YMISGYLKHGFLKELLLLVQWISYSGEKADGYTLSMVLKASNSLGSNML 153
>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 973
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 70/117 (59%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A L+ CS L +L+ G+++H +I+ D + +++MY KCG++EDA + M
Sbjct: 603 TFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRM 662
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R+V A WNA+I G+A NA EA++ F+EM+ R + PD +T +L AC+
Sbjct: 663 NTRSV------ALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACS 713
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY ++S +SL L+LG+++H ++ V + N +NMY K GS+ AR + +M
Sbjct: 299 TYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQM 358
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ DL SWN +I+G A ++ LF ++ L+PD T+ S+L AC+S
Sbjct: 359 KE------VDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSS 410
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y EAL F + + T+A L LQ G+++H ++ + D+ + +
Sbjct: 481 YREALRLFSLMHERGE-KADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVIS 539
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
IL+MY KCG ++ AR V +++P SPD +W +I+G +A+ + +MR
Sbjct: 540 GILDMYLKCGEMKSARKVFNQIP------SPDDVAWTTVISGCVENGEEEQALFTYHQMR 593
Query: 143 DRELIPDGLTVRSLLCACT 161
+ PD T +L+ AC+
Sbjct: 594 LAGVQPDEYTFATLVKACS 612
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 45 TYACLISTCSSLR-SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T ++ CSSL S +GR+VH L + D + ++++Y K G +E+A ++
Sbjct: 400 TITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHN 459
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
+ DLASWNA++ G N EA+ LFS M +R D +T
Sbjct: 460 Q------DGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQIT 502
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 13/115 (11%)
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118
L LG++ H I++S PD + N ++ MY KCGSL AR + D PQ + DL ++
Sbjct: 29 LILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSD----RDLVTY 84
Query: 119 NAIIAGVASPS------NANEAMSLFSEMRDRELIPDGLTVRSLLCAC---TSPS 164
NAI+A A +EA +F +R ++ T+ L C SPS
Sbjct: 85 NAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPS 139
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+EA F L+ + R T + L C S + + + Q DV +
Sbjct: 104 HEAFHIFRLLRQSVMLTTR-HTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGA 162
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++N+Y K + +ARV+ D MP R+V+ WN ++ +E + LFS
Sbjct: 163 LVNIYAKFQRIREARVLFDRMPVRDVV------LWNVMMKAYVEMGAGDEVLGLFSAFHR 216
Query: 144 RELIPDGLTVRSLL 157
L PD ++VR++L
Sbjct: 217 SGLRPDCVSVRTIL 230
>gi|255549567|ref|XP_002515835.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544990|gb|EEF46504.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 655
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 79/146 (54%), Gaps = 9/146 (6%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV-L 80
N+AL F + N ++P+ + +C + C+ L +L+ GR++H +L + DV+ +
Sbjct: 474 NDALELFSQMLKQYNRSVKPNAFTISCALMACARLAALRFGRQIHAFVLRDQYDCDVLYV 533
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MY K G ++ AR+V D M RN + SW +++ G + EA+ +F E
Sbjct: 534 ANCLIDMYSKSGDMDAARLVFDNMKHRNTV------SWTSLMTGYGMHGHGEEAIKVFDE 587
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
MR L+ DG+T +L AC+ V
Sbjct: 588 MRREGLVSDGITFLVVLYACSHSGMV 613
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 19/154 (12%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILS-----SKS 74
+ L EAL F +Q R T L+S C+S+ +L G++ H + + +S
Sbjct: 360 RGLGYEALNVFRQMQV-CGLRPNEVTLVSLLSGCASVGALLHGKETHCYSIKCVLNFDRS 418
Query: 75 QP--DVVLQNYILNMYGKCGSLEDARVVSDEMP--QRNVIESPDLASWNAIIAGVASPSN 130
P ++++ N I++MY KC + R + + +P RNV+ +W A+I G A
Sbjct: 419 DPRDELLVVNAIIDMYTKCKDINVGRAIFNSIPPKDRNVV------TWTAMIGGYAQHGE 472
Query: 131 ANEAMSLFSEM---RDRELIPDGLTVRSLLCACT 161
AN+A+ LFS+M +R + P+ T+ L AC
Sbjct: 473 ANDALELFSQMLKQYNRSVKPNAFTISCALMACA 506
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 29/149 (19%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ C+S+ G++VH + DV + N +++MY KCG + A V D M ++
Sbjct: 252 VLPACASMGDWLCGKQVHGFAIRYGLFEDVFVANSLVDMYAKCGLMCIANKVFDRMQHKD 311
Query: 109 VIE-----------------------------SPDLASWNAIIAGVASPSNANEAMSLFS 139
V+ D+ SW+A+IAG A EA+++F
Sbjct: 312 VVSWNAMVTGYSQIGKFEDALGLFEKMREEKIQLDVVSWSAVIAGYAQRGLGYEALNVFR 371
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNVLY 168
+M+ L P+ +T+ SLL C S +L+
Sbjct: 372 QMQVCGLRPNEVTLVSLLSGCASVGALLH 400
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ + C L S G +H + S+ +V + N ++ MYG+CG+ AR + DE+
Sbjct: 141 TFPFVFKACGELPSFLHGSCIHAIVCSTGFDSNVFVCNAVVAMYGRCGASSYARQMFDEL 200
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR---DRELIPDGLTVRSLLCACT 161
V DL SWN++IA + + LF M + +++PD +++ ++L AC
Sbjct: 201 LMGEVF---DLVSWNSMIAVYLQSGDLKSGIELFRRMWKVGEFDIVPDAVSLVNVLPACA 257
Query: 162 SPSNVL 167
S + L
Sbjct: 258 SMGDWL 263
>gi|6691205|gb|AAF24543.1|AC007508_6 F1K23.11 [Arabidopsis thaliana]
Length = 841
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 6/124 (4%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
F ST+A +I CS L S ++G++VH I+ S + + + +L+MY KCG + DA
Sbjct: 589 GFHPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDA 648
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R V D+M ++NV SW ++I G N EA+ LF+ M++ + P+ +T L
Sbjct: 649 RRVFDQMQEKNVF------SWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGAL 702
Query: 158 CACT 161
AC+
Sbjct: 703 SACS 706
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
+ G+K+H I+ + QPD+ + +L ++ KCG L AR V DE+P+ P L+++N
Sbjct: 372 KAGKKIHADIIKTGFQPDLNISIKLLILHLKCGCLSYARQVFDELPK------PTLSAYN 425
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYL 169
+I+G E + L M DG T+ +L A S + + L
Sbjct: 426 YMISGYLKHGLVKELLLLVQRMSYSGEKADGYTLSMVLKASNSRGSTMIL 475
>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 79/148 (53%), Gaps = 17/148 (11%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSK------SQP 76
EAL+ F L+ + + P+ T+ L++ C++L LQLGR+ H H+L
Sbjct: 368 EALILFRLLKRES---VWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDS 424
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DV + N +++MY KCGS+E+ V M ++ D SWNA+I G A N+A+
Sbjct: 425 DVFVGNSLIDMYMKCGSVENGCRVFQHMLEK------DCVSWNAMIVGYAQNGFGNKALE 478
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPS 164
+F +M + PD +T+ +LCAC+
Sbjct: 479 VFCKMLESGEAPDHVTMIGVLCACSHAG 506
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 79/144 (54%), Gaps = 7/144 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
++EALV F + + F + ++ +S C+ L+ L+LG ++H + S DV + +
Sbjct: 132 FDEALVYFAQMHGH-GFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGS 190
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG +E A+ V DEM R+ + SWN++I +EA+ +F EM
Sbjct: 191 ALVDMYSKCGRVEYAQSVFDEMTVRSRV------SWNSLITCYEQNGPVDEALKIFVEMI 244
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
+ PD +T+ S++ AC + S +
Sbjct: 245 KCGVEPDEVTLASVVSACATISAI 268
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 75/148 (50%), Gaps = 26/148 (17%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILS-SKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T A ++S C+++ +++ G+++H ++ + + D++L N +L+MY KC + +AR++ D
Sbjct: 254 TLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDM 313
Query: 104 MPQRNVIES-------------------------PDLASWNAIIAGVASPSNANEAMSLF 138
MP R+V+ D+ +WNA+IAG EA+ LF
Sbjct: 314 MPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILF 373
Query: 139 SEMRDRELIPDGLTVRSLLCACTSPSNV 166
++ + P T +LL AC + +++
Sbjct: 374 RLLKRESVWPTHYTFGNLLNACANLADL 401
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 25/144 (17%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
S ++ L++ C+ RS + +VH I+ S + +QN ++++YGKCG ++ AR + D
Sbjct: 20 SPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDR 79
Query: 104 MPQRNVIE-------------------------SPDLASWNAIIAGVASPSNANEAMSLF 138
M +RN+ D SWN++I+G +EA+ F
Sbjct: 80 MLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYF 139
Query: 139 SEMRDRELIPDGLTVRSLLCACTS 162
++M + + + S L AC
Sbjct: 140 AQMHGHGFLVNEYSFGSALSACAG 163
>gi|356497955|ref|XP_003517821.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15690-like [Glycine max]
Length = 452
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
Y L++ C RSL+ G++VH+ + S + DV L N ++ MY KCGS++DAR V D++
Sbjct: 107 VYLALLNLCEHTRSLESGKRVHEFLRRSTFRRDVELSNRLIGMYCKCGSVKDARRVFDQI 166
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P+RN+ +SW+ +I G A+ + + +F +M+ + PDG T +L AC
Sbjct: 167 PERNI------SSWHLMIGGYAANGLGCDGLLVFQQMKQAGVPPDGETFELVLAACAQAE 220
Query: 165 NV 166
V
Sbjct: 221 AV 222
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 75/135 (55%), Gaps = 8/135 (5%)
Query: 28 VAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
VAFD+ + I+P T+ L++ C+S +L GR++H I + DV++ ++
Sbjct: 598 VAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLI 657
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+MY KCGS+EDA V ++P++NV SW ++IAG A EA+ LF +M+
Sbjct: 658 SMYTKCGSIEDAHQVFHKLPKKNVY------SWTSMIAGYAQHGRGKEALELFYQMQQEG 711
Query: 146 LIPDGLTVRSLLCAC 160
+ PD +T L AC
Sbjct: 712 VKPDWITFVGALSAC 726
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 7/144 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+NEA+ + + ++++ +I TY+ L+ C ++L G ++++HI S QPD+ ++N
Sbjct: 91 FNEAMQVLERV-DSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRN 149
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++NMY KCG+ A+ + D+M ++ D+ SWN ++ G EA L +M
Sbjct: 150 TLINMYAKCGNTISAKQIFDDMREK------DVYSWNLLLGGYVQHGLYEEAFKLHEQMV 203
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
+ PD T S+L AC NV
Sbjct: 204 QDSVKPDKRTFVSMLNACADARNV 227
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 11/143 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y+ AL F L I+P ST+ +++ C S SL+LG+ VH I+ + + D+ +
Sbjct: 495 YDNALATFQALLKEG---IKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHV 551
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++M+ CG L A+ + ++MP+R DL SWN IIAG A F
Sbjct: 552 SNALVSMFVNCGDLMSAKNLFNDMPKR------DLVSWNTIIAGFVQHGKNQVAFDYFKM 605
Query: 141 MRDRELIPDGLTVRSLLCACTSP 163
M++ + PD +T LL AC SP
Sbjct: 606 MQESGIKPDKITFTGLLNACASP 628
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+ L+ C+ +L+ G+KVH + ++ + IL+MY KCGS+EDA V D +
Sbjct: 315 FVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVK 374
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
RNV+ SW A+IAG A +EA F++M + + P+ +T S+L AC+SPS
Sbjct: 375 GRNVV------SWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPS 427
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 11/146 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
LY EA F + ++P T+ +++ C+ R++ GR++++ IL + D
Sbjct: 189 HGLYEEA---FKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTD 245
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ + ++NM+ KCG + DA V D +P R DL +W ++I G+A +A +L
Sbjct: 246 LFVGTALINMHIKCGDIGDATKVFDNLPTR------DLVTWTSMITGLARHGRFKQACNL 299
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSP 163
F M + + PD + SLL AC P
Sbjct: 300 FQRMEEEGVQPDKVAFVSLLRACNHP 325
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 8/140 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AF F I P+ T+ ++ CSS +L+ G+++ DHI+ + D ++ +L+
Sbjct: 397 AFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLS 456
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCGSL+DA V +++ ++NV+ +WNA+I + A++ F + +
Sbjct: 457 MYAKCGSLKDAHRVFEKISKQNVV------AWNAMITAYVQHEQYDNALATFQALLKEGI 510
Query: 147 IPDGLTVRSLLCACTSPSNV 166
P+ T S+L C S ++
Sbjct: 511 KPNSSTFTSILNVCKSSDSL 530
>gi|297800206|ref|XP_002867987.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297313823|gb|EFH44246.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 616
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 7/144 (4%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
N+A+ F + N+ F T ++ CS ++++ GR+VH ++ + DV +
Sbjct: 266 NKAIFMFIGMLNH-GFLPNEFTVCSILKACSEEKAIRFGRQVHSLVVKRMIKTDVFVGTS 324
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+++MY KCG + D R V D M RN + +W +IIA A EA+SLF M+
Sbjct: 325 LMDMYAKCGEISDCRKVFDGMSNRNTV------TWTSIIAAHAREGFGEEAISLFRVMKR 378
Query: 144 RELIPDGLTVRSLLCACTSPSNVL 167
R LI + LTV S+L AC S +L
Sbjct: 379 RHLIANNLTVVSILRACGSVGALL 402
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 78/149 (52%), Gaps = 9/149 (6%)
Query: 21 NLYNEALVAF-DFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
L +EA F D++++ F + CL++ CS +LGR+VH +++ +++
Sbjct: 162 GLEDEAFSLFEDYVKHGIRF-TNERMFVCLLNLCSRRSEFELGRQVHGNMVKV-GVGNLI 219
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+++ ++ Y +CG L A D M +++VI SW A+I+ + + N+A+ +F
Sbjct: 220 VESSLVYFYAQCGELTSALRAFDMMEEKDVI------SWTAVISACSRKGHGNKAIFMFI 273
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNVLY 168
M + +P+ TV S+L AC+ + +
Sbjct: 274 GMLNHGFLPNEFTVCSILKACSEEKAIRF 302
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 15/151 (9%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A DFL+ + P+ TY+ + C++ SL +GR +H + + +V + + +++
Sbjct: 470 ALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIH 529
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG + +A V D MP++N L SW A+I G A EA+ L M
Sbjct: 530 MYAKCGFVSEAFRVFDSMPEKN------LVSWKAMIMGYARNGFCREALKLMYRMEAEGF 583
Query: 147 IPDGLTVRSLLCAC-------TSPSNVLYLD 170
D ++L C PS YL+
Sbjct: 584 EVDDYIFATILSTCGDIELDEAEPSATCYLE 614
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 6/123 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ C S+ +L LG+++H I+ + + +V + + ++ +Y KCG DA V ++
Sbjct: 387 TVVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQL 446
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P R+V+ SW A+I+G +S + +EA+ EM + P+ T S L AC +
Sbjct: 447 PSRDVV------SWTAMISGCSSLGHESEALDFLKEMIQEGVEPNPFTYSSALKACANSE 500
Query: 165 NVL 167
++L
Sbjct: 501 SLL 503
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
YA L S ++L +++H L + N +++ + G L AR V D MP
Sbjct: 85 YALLAEWLQSSNGMRLIKRIHAMALKCFDDQVIYFGNNLISSCVRLGDLVYARKVFDSMP 144
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
RN + +W A+I G +EA SLF +
Sbjct: 145 DRNTV------TWTAMIDGYLKFGLEDEAFSLFED 173
>gi|449475590|ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g09040, mitochondrial-like [Cucumis sativus]
Length = 974
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 83/149 (55%), Gaps = 10/149 (6%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
QN + +AL F Q+ + I P + +A ++ C+ + SLQ G+++H I + D
Sbjct: 692 QNHHEKAL---QFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMD 748
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + +++MY KCG ++ + V EMP+RN ++ SWN++I G+A A EA+ +
Sbjct: 749 EVTCSSLIDMYAKCGDVKGSLQVFREMPRRN-----NVISWNSMIVGLAKNGYAEEALEI 803
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNV 166
F +M + +IPD +T +L AC+ V
Sbjct: 804 FKQMEQQSIIPDEVTFLGVLSACSHAGRV 832
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ + S C+SL L G ++H ++ +K ++ + N +++MY K G+L++AR
Sbjct: 412 TFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEAR------ 465
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
Q +++ D SWNAII G +EA +F M ++PD +++ S++ AC
Sbjct: 466 KQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACA 522
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 6/140 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ E ++F T + S+ ++S +SL L G VH +V + +
Sbjct: 289 FAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGS 348
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++NMY KC ++ A+ V + + +RN++ WNA++ G A A E M FS M+
Sbjct: 349 ALVNMYAKCSKMDAAKQVFNSLGERNIV------LWNAMLGGFAQNGLAQEVMEFFSCMK 402
Query: 143 DRELIPDGLTVRSLLCACTS 162
PD T S+ AC S
Sbjct: 403 RHGPQPDEFTFTSIFSACAS 422
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 8/124 (6%)
Query: 38 NFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
N +RP+ T+A ++S CS L+ + GR+VH + + Q +++MY KC L
Sbjct: 135 NHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLR 194
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
DAR+V D + D SW A+IAG EA+ +F M+ PD +T+ +
Sbjct: 195 DARLVFDGAL------NLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVT 248
Query: 156 LLCA 159
++ A
Sbjct: 249 VVNA 252
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 13/145 (8%)
Query: 19 IQNLYN-EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQ 75
+Q YN EA F + +N + P + A ++S C++++ L+ G++ H ++
Sbjct: 487 VQEEYNDEAFFMFRRMVSNG---VLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLD 543
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
+ +++MY KCG + AR V MP RNV+ S NA+IAG + + EA+
Sbjct: 544 TSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVV------SVNALIAGY-TMGHLEEAI 596
Query: 136 SLFSEMRDRELIPDGLTVRSLLCAC 160
LF E++ L P +T LL C
Sbjct: 597 HLFQEIQMVGLKPTEVTFAGLLDGC 621
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 10/142 (7%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSK--SQPDVVLQNYI 84
A Q ++P+ T+A L+ C L LGR++H ++ S ++V + +
Sbjct: 595 AIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLL 654
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
C + R V E + L W A+I+G A ++ +A+ + MR
Sbjct: 655 ------CLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSD 708
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
++PD S+L AC S++
Sbjct: 709 NILPDQAAFASVLRACAGMSSL 730
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 56 LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDL 115
L++L + +H L +L N I+++Y KCG+++ A+ + E D+
Sbjct: 54 LQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRL------EKKDV 107
Query: 116 ASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+WN++++ + F M + E+ P+ T +L AC+ +V
Sbjct: 108 FAWNSVLSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDV 158
>gi|302816964|ref|XP_002990159.1| hypothetical protein SELMODRAFT_131170 [Selaginella moellendorffii]
gi|300142014|gb|EFJ08719.1| hypothetical protein SELMODRAFT_131170 [Selaginella moellendorffii]
Length = 849
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 48/129 (37%), Positives = 71/129 (55%), Gaps = 13/129 (10%)
Query: 40 RIRPS-------TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
RI+PS TYA L C++ R H + SK +PDVV+ +++MY +CG
Sbjct: 274 RIQPSGLQPNQVTYALLFRACATNGVYSDARVAHMCFILSKLRPDVVVNTALVSMYSRCG 333
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
SLEDAR V D MP +NV+ +WN +IAG A +EA+ L+ M + PD +T
Sbjct: 334 SLEDARRVFDRMPGKNVV------TWNVMIAGYAQEGYTDEALQLYVSMEAAGVEPDEIT 387
Query: 153 VRSLLCACT 161
++L +C+
Sbjct: 388 FVNVLESCS 396
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ I CSS+ +L G + + ++ + DVVL ++N+YGKCG L+ A V +
Sbjct: 490 TFVSTIDACSSIGALVEGHAIFERVIVTGHLIDVVLGTSLINLYGKCGRLDYALEVFHYL 549
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMS--LFSEMRDRELIPDGLTVRSLLCACT 161
+N++ +WN I+A AS N E +S L EM P+ +T+ ++L C+
Sbjct: 550 SFKNIV------TWNTILA--ASSQNGEETLSDELLQEMDLDGAQPNEMTLLNMLFGCS 600
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ +CS L GR +H H++ + + + + ++ MY CGSL DA ++
Sbjct: 387 TFVNVLESCSLAEHLAAGRDIHKHVVDAGYDSSLTVLSALITMYSACGSLGDAV----DV 442
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ V + SW A++ + A++LF +M + + +T S + AC+S
Sbjct: 443 FHKGVTTHSSVISWTAMLTALTRNGEGRSALALFRKMDLEGVRANVVTFVSTIDACSS 500
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 34 QNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKCG 92
QN + + P+ Y L+ + +L + + HI SK D +L N ++ YGKCG
Sbjct: 74 QNQKSGFVDPAAYVSLLKQSGDVTAL---KTIQAHISHSKRFAGDRLLLNCVVEAYGKCG 130
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
++DAR+V I P++ SW ++A A + + L +M + P+ +T
Sbjct: 131 CVKDARLVFSS------IRHPNVYSWTILLAAYAQNGHHKTVLELLRQMDLLGVWPNAVT 184
Query: 153 VRSLLCACTSPSN 165
+ +++ A + N
Sbjct: 185 LATVIGAVSELGN 197
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 9/127 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSS-KSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T A +I S L + RK+H ++ + DVVL +++MY KCG + A VV D+
Sbjct: 184 TLATVIGAVSELGNWDEARKIHARAAATCQLTYDVVLVTALIDMYAKCGDIFHAEVVFDQ 243
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
RN DLA NA+I+ +A+S F+ ++ L P+ +T L AC
Sbjct: 244 --ARN----KDLACCNAMISAYIQLGYTVDAVSTFNRIQPSGLQPNQVTYALLFRACA-- 295
Query: 164 SNVLYLD 170
+N +Y D
Sbjct: 296 TNGVYSD 302
>gi|224126363|ref|XP_002329535.1| predicted protein [Populus trichocarpa]
gi|222870244|gb|EEF07375.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 89/169 (52%), Gaps = 22/169 (13%)
Query: 13 FYNSQPIQNL---------------YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLR 57
F++ P++N+ Y++ L FD + +F ++ +++ C+ L+
Sbjct: 308 FFDEMPLRNVVSWNVMLALYLRCKKYSDCLRFFDMMVGG-DFVPDEASLVSVLTACAELK 366
Query: 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
L G+ VH ++ + +PD++L +L MY KCG+++ AR V D+MP+++V+ S
Sbjct: 367 MLDQGKWVHSYMKDNGIKPDMLLSTALLTMYAKCGAMDLAREVFDKMPEKSVV------S 420
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
WN++I G + ++A+ +F EM +P+ T S+L AC+ V
Sbjct: 421 WNSMIIGYGIHGHGDKALEMFREMEKGGPMPNDATFMSVLSACSHSGMV 469
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
Y E ++A L N+ T+ + C+ + SL+ G+KVH ++ + D+ ++
Sbjct: 144 FYYEKMIAKWVLPNHY-------TFPLVAKVCADIGSLREGQKVHALVVKFGFELDLFVR 196
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N + Y CG DAR+V D V+ DL SWN++I G A +F EM
Sbjct: 197 NSFIRFYSVCGRTSDARMVFD---NGFVL---DLVSWNSMIDGYVKNGELGLAREIFDEM 250
Query: 142 RDRELI 147
+R++
Sbjct: 251 YERDIF 256
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118
L L R++ D + + D+ N +++ Y G +E AR + D+MP R+V+ SW
Sbjct: 240 LGLAREIFDEMY----ERDIFTWNSMISGYVGVGDMEAARGLFDKMPSRDVV------SW 289
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELI 147
N +I G A + + A F EM R ++
Sbjct: 290 NCMIDGFARIKDVSMAAKFFDEMPLRNVV 318
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 27/156 (17%)
Query: 39 FRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
F I P Y C ++ CS L ++ G+ VH ++ Q ++ LQN I+++Y CG +
Sbjct: 107 FDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGV 166
Query: 97 ARVVSDEMPQRNVI-----------------------ESPD--LASWNAIIAGVASPSNA 131
AR V D+MPQR+VI E P+ + SW ++I G A +
Sbjct: 167 ARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKS 226
Query: 132 NEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
EA+ LF EM D L+P+ +TV ++L AC N++
Sbjct: 227 KEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLV 262
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 72/117 (61%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ C+ + +L LGR++HD S + ++ + N +++MY KCG LEDA + D M
Sbjct: 247 TVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNM 306
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+R V+ SW+A+IAG+A+ A +A++LF++M + + P+ +T +L AC+
Sbjct: 307 EERTVV------SWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACS 357
>gi|302821737|ref|XP_002992530.1| hypothetical protein SELMODRAFT_135370 [Selaginella moellendorffii]
gi|300139732|gb|EFJ06468.1| hypothetical protein SELMODRAFT_135370 [Selaginella moellendorffii]
Length = 849
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 48/129 (37%), Positives = 71/129 (55%), Gaps = 13/129 (10%)
Query: 40 RIRPS-------TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
RI+PS TYA L C++ R H + SK +PDVV+ +++MY +CG
Sbjct: 274 RIQPSGLQPNQVTYALLFRACATNGVYSDARVAHMCFILSKLRPDVVVNTALVSMYSRCG 333
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
SLEDAR V D MP +NV+ +WN +IAG A +EA+ L+ M + PD +T
Sbjct: 334 SLEDARRVFDRMPGKNVV------TWNVMIAGYAQEGYTDEALQLYVSMEAAGVEPDEIT 387
Query: 153 VRSLLCACT 161
++L +C+
Sbjct: 388 FVNVLESCS 396
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ I CSS+ +L G + + ++ + DVVL ++N+YGKCG L+ A V +
Sbjct: 490 TFVSTIDACSSIGALVEGHAIFERVIVTGYLIDVVLGTSLINLYGKCGRLDYALEVFHHL 549
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMS--LFSEMRDRELIPDGLTVRSLLCACT 161
+N++ +WN I+A AS N E +S L EM P+ +T+ ++L C+
Sbjct: 550 SFKNIV------TWNTILA--ASSQNGEETLSAELLQEMDLDGAQPNEMTLLNMLFGCS 600
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ +CS L GR +H H++ + + + + ++ MY CGSL DA ++
Sbjct: 387 TFVNVLESCSLAEHLAAGRDIHKHVVDAGYDSSLTVLSALITMYSACGSLGDAV----DV 442
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ V + SW A++ + A++LF +M + + +T S + AC+S
Sbjct: 443 FHKGVTTHSSVISWTAMLTALTRNGEGRSALALFRKMDLEGVKANVVTFVSTIDACSS 500
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 34 QNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKCG 92
QN + + P+ Y L+ + +L + + HI SK D +L N ++ YGKCG
Sbjct: 74 QNQKSDFVDPAAYVSLLKQAGDVTAL---KTIQAHISHSKRFSGDRLLLNCVVEAYGKCG 130
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
++DAR+V I P++ SW ++A A + + L +M + P+ +T
Sbjct: 131 CVKDARLVFSS------IRHPNVYSWTILLAAYAQNGHHKTVLELLRQMDLLGVWPNAVT 184
Query: 153 VRSLLCACT 161
+ +++ A +
Sbjct: 185 LATVIGAVS 193
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 9/127 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSS-KSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T A +I S L RK+H ++ + DVVL +++MY KCG + A VV D+
Sbjct: 184 TLATVIGAVSELGDWDEARKIHARAAATCQLTYDVVLVTALIDMYAKCGDIFHAEVVFDQ 243
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
RN DLA NA+I+ +A+S F+ ++ L P+ +T L AC
Sbjct: 244 --ARN----KDLACCNAMISAYIQLGYTVDAVSTFNRIQPSGLQPNQVTYALLFRACA-- 295
Query: 164 SNVLYLD 170
+N +Y D
Sbjct: 296 TNGVYSD 302
>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g01510
gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 825
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 88/157 (56%), Gaps = 8/157 (5%)
Query: 6 KTQLRFTFYNSQPIQ-NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRK 64
+T + +T S +Q L+ L F ++ +N R ST+A ++ +S SL LG++
Sbjct: 415 RTTVSWTALISGYVQKGLHGAGLKLFTKMRG-SNLRADQSTFATVLKASASFASLLLGKQ 473
Query: 65 VHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124
+H I+ S + +V + +++MY KCGS++DA V +EMP RN + SWNA+I+
Sbjct: 474 LHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAV------SWNALISA 527
Query: 125 VASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
A + A+ F++M + L PD +++ +L AC+
Sbjct: 528 HADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACS 564
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 11/164 (6%)
Query: 8 QLRFTFYN----SQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGR 63
+L F YN S + Y +L F +Q F R +A ++S ++L SLQ+GR
Sbjct: 313 ELDFVSYNVVISSYSQADQYEASLHFFREMQC-MGFDRRNFPFATMLSIAANLSSLQMGR 371
Query: 64 KVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIA 123
++H L + + + + N +++MY KC E+A ++ +PQR + SW A+I+
Sbjct: 372 QLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTV------SWTALIS 425
Query: 124 GVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
G + LF++MR L D T ++L A S +++L
Sbjct: 426 GYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLL 469
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
LY E++ F ++ + + +PS T++ ++ L LG+++H +++ D
Sbjct: 229 GLYTESIHLFLKMRQSGH---QPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDA 285
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N IL+ Y K + + R++ DEMP+ D S+N +I+ + ++ F
Sbjct: 286 SVGNQILDFYSKHDRVLETRMLFDEMPEL------DFVSYNVVISSYSQADQYEASLHFF 339
Query: 139 SEMR----DRELIP 148
EM+ DR P
Sbjct: 340 REMQCMGFDRRNFP 353
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
RKV+D + + V N +++ + K G + AR + D MP R V+ +W +
Sbjct: 67 ARKVYDEM----PHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVV------TWTIL 116
Query: 122 IAGVASPSNANEAMSLFSEM--RDRELIPDGLTVRSLLCAC 160
+ A S+ +EA LF +M +PD +T +LL C
Sbjct: 117 MGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGC 157
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
R+V I+ + D N+I+ + G + AR V DEMP +N + S N +I
Sbjct: 33 RRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTV------STNTMI 86
Query: 123 AGVASPSNANEAMSLFSEMRDRELI 147
+G + + A LF M DR ++
Sbjct: 87 SGHVKTGDVSSARDLFDAMPDRTVV 111
>gi|297844718|ref|XP_002890240.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336082|gb|EFH66499.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 763
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T C++S C+ L +L LGR++H H++ + ++++QN ++NMY KCG L + +V +
Sbjct: 436 TICCILSICAELPALNLGREIHGHVIRTSMSDNILVQNALVNMYTKCGLLREGSLVFE-- 493
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
I DL SWN+II G +A+S+F M PDG+ + ++L AC+
Sbjct: 494 ----AIRDKDLISWNSIIKGYGMHGFGEKALSMFDRMIKSGCHPDGIALVAVLSACSHAG 549
Query: 165 NV 166
V
Sbjct: 550 LV 551
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
A S C+ L +L + KVH ++ + + +N ++++YGK G ++DA + +
Sbjct: 298 AVFFSVCAELGALSIADKVHGFVIKGGFEECLPSRNALIHVYGKQGKVKDAEQLFRQ--- 354
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
I + + SWN++I +EA+SLF+E+ +
Sbjct: 355 ---IRNKGIESWNSLITSFVDAGKLDEALSLFTELEE 388
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ C L L R H ++ + ++ + N +L +Y K + DA + EMP RN
Sbjct: 164 ILRACRYLGRFGLCRAFHSQVIQIGLKENLHVANELLTLYPKAARIGDAYNLFVEMPVRN 223
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ SWN +I G + + A+ +F M+ + PD +T SLL +C S
Sbjct: 224 RM------SWNVMIKGFSQEFDCESAVKIFEWMQREDFKPDEVTWTSLL-SCHS 270
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 63 RKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNA 120
++VH +L S + + N++ ++Y + G L DAR V + + +++ DL WN+
Sbjct: 73 KQVHAQVLVSDYIYRSGSLAANFV-SVYSRLGLLLDARNVFETV---SLVLWSDLRLWNS 128
Query: 121 IIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
I+ S A L+ MR+R L DG + +L AC
Sbjct: 129 ILKANVSHGLYENAFELYRGMRERGLTGDGFILPLILRAC 168
>gi|224083626|ref|XP_002307076.1| predicted protein [Populus trichocarpa]
gi|222856525|gb|EEE94072.1| predicted protein [Populus trichocarpa]
Length = 733
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 79/146 (54%), Gaps = 11/146 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y EA+ FD + + ++ P +T ++S C L SL+ G+ VH +I + +V L
Sbjct: 472 YAEAITLFDEMISE---KLNPNSATLVIVLSACCHLPSLEKGKMVHQYIKEGGFELNVSL 528
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+++MY KCG LE +R + + M +++VI SWN +I+G +AN AM +F +
Sbjct: 529 GTALVDMYAKCGQLEQSRELFNSMKEKDVI------SWNVMISGYGLHGDANSAMEVFQQ 582
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M + P+ +T SLL ACT V
Sbjct: 583 MEQSNVKPNAITFLSLLSACTHAGYV 608
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
++ T C +L ++ GR +H + + V+Q+ +L+MY KCG++E+A
Sbjct: 232 KVNSRTLEGGFQACGNLGAMIAGRCLHGLAVKTGLGCSQVVQSSLLSMYSKCGNVEEAH- 290
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+ Q + D+ SW ++I A NE ++LF +M+ ++ PDG+ V +L
Sbjct: 291 --NSFCQ---VVDKDVFSWTSVIGVCARFGFMNECLNLFWDMQVDDVYPDGIVVSCIL 343
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 15/132 (11%)
Query: 29 AFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKS---QPDVVLQNY 83
AFDF P+ + +++TC+ L L+ G+ +H L SKS + + +
Sbjct: 114 AFDFYIQMRYDNTPPNQFTIPMIVATCAELLWLEEGKYIHG--LVSKSGLFAENSAVGSS 171
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+ MY KCG +EDA ++ DE+ R+V+ SW A++ G ++ + + EM
Sbjct: 172 FVYMYAKCGVMEDASLMFDEIVVRDVV------SWTALVIGYVHNDDSEKGLECLCEM-- 223
Query: 144 RELIPDGLTVRS 155
R + DG V S
Sbjct: 224 RRIGGDGEKVNS 235
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 65 VHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124
VH +I+ + DV + N +++MYGK G+L ++ +M R D+ +WN +I+
Sbjct: 413 VHCYIIKNSVDEDVSIANSLIDMYGKGGNLS----IAWKMFCRT---QRDVVTWNTLISS 465
Query: 125 VASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ EA++LF EM +L P+ T+ +L AC
Sbjct: 466 YTHSGHYAEAITLFDEMISEKLNPNSATLVIVLSAC 501
>gi|42562381|ref|NP_174190.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806502|sp|Q1PFQ9.2|PPR62_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g28690, mitochondrial; Flags: Precursor
gi|332192893|gb|AEE31014.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 520
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 6/125 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
F ST+A +I CS L S ++G++VH I+ S + + + +L+MY KCG + D
Sbjct: 267 AGFHPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGIND 326
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
AR V D+M ++NV SW ++I G N EA+ LF+ M++ + P+ +T
Sbjct: 327 ARRVFDQMQEKNVF------SWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGA 380
Query: 157 LCACT 161
L AC+
Sbjct: 381 LSACS 385
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
+ G+K+H I+ + QPD+ + +L ++ KCG L AR V DE+P+ P L+++N
Sbjct: 51 KAGKKIHADIIKTGFQPDLNISIKLLILHLKCGCLSYARQVFDELPK------PTLSAYN 104
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYL 169
+I+G E + L M DG T+ +L A S + + L
Sbjct: 105 YMISGYLKHGLVKELLLLVQRMSYSGEKADGYTLSMVLKASNSRGSTMIL 154
>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 73/117 (62%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T AC++ C+SL +L+ G+++H HIL + D + N +++MY KCG+L AR++ D +
Sbjct: 327 TMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMI 386
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P++ DL SW +IAG +EA++ F+EMR+ + PD ++ S+L AC+
Sbjct: 387 PEK------DLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACS 437
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY ++ C+ L+S+Q GR++H I S+ + D VL + ++ MY CG L + R + D++
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
V WN ++ G A N E++SLF MR+
Sbjct: 163 ANEKVF------LWNLLMNGYAKIGNFRESLSLFKRMRE 195
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 70 LSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPS 129
L++ ++ L N +L+MY K G+L A V + M +R+V+ SW ++IAG A
Sbjct: 251 LATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVV------SWTSMIAGYAREG 304
Query: 130 NANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
++ ++ LF EM +L P+ +T+ +L AC S
Sbjct: 305 LSDMSVRLFHEMEKEDLFPNSITMACILPACAS 337
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 19/150 (12%)
Query: 25 EALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
EAL AF ++ ++P ST+ C I +CS+L L GR+ H L +PD+ + +
Sbjct: 135 EALRAFSSMRK---LSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSS 191
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG L DAR + DE+ RN++ SW ++I G +A+ A+ LF E
Sbjct: 192 ALVDMYSKCGELRDARTLFDEISHRNIV------SWTSMITGYVQNDDAHRALLLFKEFL 245
Query: 143 --------DRELIPDGLTVRSLLCACTSPS 164
D E+ D + + S+L AC+ S
Sbjct: 246 VEESGSEGDGEVCVDPIAMVSVLSACSRVS 275
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 6/140 (4%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+ E++ F + + T + ++ C+ S +LG+ +HD ++ + +V +
Sbjct: 342 MSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVG 401
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
I++MY KCG +E AR D M ++NV SW+A++AG +A EA+ +F EM
Sbjct: 402 TSIIDMYCKCGKVEMARKAFDRMREKNV------KSWSAMVAGYGMHGHAKEALEVFYEM 455
Query: 142 RDRELIPDGLTVRSLLCACT 161
+ P+ +T S+L AC+
Sbjct: 456 NMAGVKPNYITFVSVLAACS 475
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 7/140 (5%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
L+ E LV + + + P ++S CS + + VH ++ + D+ ++
Sbjct: 240 LFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVE 299
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N +++ Y KCG L +R V D M +R+VI SWN+IIA A + E+M +F M
Sbjct: 300 NTLMDAYAKCGELGVSRRVFDGMAERDVI------SWNSIIAVYAQNGMSTESMEIFHRM 353
Query: 142 -RDRELIPDGLTVRSLLCAC 160
+D E+ + +T+ ++L AC
Sbjct: 354 VKDGEINYNAVTLSAVLLAC 373
>gi|297739749|emb|CBI29931.3| unnamed protein product [Vitis vinifera]
Length = 838
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 25/165 (15%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
+L+ EAL F ++N R ++ IS C+ +++L G+++H S D+
Sbjct: 494 HDLFAEALKLFQEMENQ-GIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLS 552
Query: 80 L-----QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+ N ++ +Y KCGS+EDA+ EMP++NV+ SWNA+I G + +EA
Sbjct: 553 IGNALASNVLITLYSKCGSIEDAKREFFEMPEKNVV------SWNAMITGYSQHGYGSEA 606
Query: 135 MSLFSEMRDRELI-------------PDGLTVRSLLCACTSPSNV 166
+SLF EM+ L+ PD + R+LL ACT N+
Sbjct: 607 VSLFEEMKQLGLMPNHVTFVGEMPIEPDAMIWRTLLSACTVHKNI 651
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY ++ TC+SL +L LG ++H ++ S Q +V + + +++MY K G L+ AR + +
Sbjct: 417 TYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRL 476
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ +V+ SW A+IAG EA+ LF EM ++ + D + S + AC
Sbjct: 477 REEDVV------SWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAG 528
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P ++ ++S C+ + +LG ++H I+ + + N ++ +Y + G+L A +
Sbjct: 213 PYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFS 272
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+M +R+ I S+N++I+G+A ++ A+ LF +M+ + PD +TV SLL AC S
Sbjct: 273 KMHRRDRI------SYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACAS 326
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
R TY L C + SL +K+H I S + VL + ++++Y G +++A
Sbjct: 5 GIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNA 64
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+ D++P NV + WN +I+G+ + A++ + LFS M + PD T S+L
Sbjct: 65 IKLFDDIPSSNV------SFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVL 118
Query: 158 CACTS 162
AC+
Sbjct: 119 RACSG 123
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A L+S C+S+ + G+++H +++ D++++ +L++Y KC +E A
Sbjct: 316 TVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTT 375
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
NV+ WN ++ N +E+ +F +M+ L+P+ T S+L CTS
Sbjct: 376 ETENVV------LWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTS 427
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 7/119 (5%)
Query: 44 STYACLISTCSSLRS-LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
ST+A ++ CS ++ Q+ ++H I+ ++ N ++++Y K G ++ A++V +
Sbjct: 112 STFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFE 171
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ + D SW A+I+G++ +EA+ LF +M +IP S+L ACT
Sbjct: 172 RLFLK------DSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACT 224
>gi|116830928|gb|ABK28420.1| unknown [Arabidopsis thaliana]
Length = 521
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 6/125 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
F ST+A +I CS L S ++G++VH I+ S + + + +L+MY KCG + D
Sbjct: 267 AGFHPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGIND 326
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
AR V D+M ++NV SW ++I G N EA+ LF+ M++ + P+ +T
Sbjct: 327 ARRVFDQMQEKNVF------SWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGA 380
Query: 157 LCACT 161
L AC+
Sbjct: 381 LSACS 385
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
+ G+K+H I+ + QPD+ + +L ++ KCG L AR V DE+P+ P L+++N
Sbjct: 51 KAGKKIHADIIKTGFQPDLNISIKLLILHLKCGCLSYARQVFDELPK------PTLSAYN 104
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYL 169
+I+G E + L M DG T+ +L A S + + L
Sbjct: 105 YMISGYLKHGLVKELLLLVQRMSYSGEKADGYTLSMVLKASNSRGSTMIL 154
>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
Length = 590
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 6/125 (4%)
Query: 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
R Y I+ C R+L GR+VH +++++ +P V L ++ MY +CG+L+DAR V
Sbjct: 9 RFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVL 68
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
D MP+R+V+ SW +I+G + EA+ LF +M IP+ T+ ++L +C+
Sbjct: 69 DRMPERSVV------SWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCS 122
Query: 162 SPSNV 166
P ++
Sbjct: 123 GPQSI 127
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 7/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L++ S L SL G++VH IL + V LQN +++MY KCG L +R V D M
Sbjct: 214 TFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNM 273
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+R+V+ SWNA++ G +E +SLF ++ +E+ PD +T+ ++L C+
Sbjct: 274 LERSVV------SWNAMLMGYGRHGLGHEVISLFKDLH-KEVKPDSVTLLAVLSGCS 323
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 71/124 (57%), Gaps = 6/124 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++++CS +S+ G++VH ++ + + + + + +L+MY K ++++AR V D +
Sbjct: 113 TLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTL 172
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P+R+V+ S AII+G A EA+ LF ++ + + +T +L+ A + +
Sbjct: 173 PERDVV------SCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLA 226
Query: 165 NVLY 168
++ Y
Sbjct: 227 SLDY 230
>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 70/124 (56%), Gaps = 8/124 (6%)
Query: 41 IRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
IRP Y C++ TC L L GR+VH H++ + DV + N ++ MY KCG + AR
Sbjct: 191 IRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSAR 250
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+V D MP+R+ I SWNA+I+G E + LF MR+ + PD +T+ S++
Sbjct: 251 LVFDRMPRRDRI------SWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVIS 304
Query: 159 ACTS 162
AC +
Sbjct: 305 ACEA 308
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 9/142 (6%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F F Q + + T ++S C+ + +L G+++H H L + D L N +
Sbjct: 481 EAL--FFFQQMILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNAL 538
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
L+MY +CG +E A Q N E D+ASWN ++ G A A+ LF +M +
Sbjct: 539 LDMYVRCGRMEPA------WNQFNSCEK-DVASWNILLTGYAQQGKGGLAVELFHKMIES 591
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
++ PD +T SLLCAC+ V
Sbjct: 592 DVNPDEITFTSLLCACSRSGMV 613
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T +IS C +L +LGR+VH +++ + +V + N ++ M+ G ++A +V +M
Sbjct: 298 TMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKM 357
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
E DL SW A+I+G +A+ ++ M ++PD +T+ S+L AC
Sbjct: 358 ------EFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAG 409
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
+AL+ D +Q + TY L+ C R+ G +VH ++ + ++ V L N +
Sbjct: 77 KALIHLDSMQE-LQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNAL 135
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
L+M+ + G L +A V +M +R DL SWN ++ G A +EA++L+ M
Sbjct: 136 LSMFVRFGDLVEAWYVFGKMAER------DLFSWNVLVGGYAKAGYFDEALNLYHRMLWV 189
Query: 145 ELIPDGLTVRSLLCAC 160
+ PD T +L C
Sbjct: 190 GIRPDVYTFPCVLRTC 205
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++S C+ L L G +H+ + V++ N +++MY KC ++ A V +
Sbjct: 399 TIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRI 458
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P +NVI SW +II G+ + EA+ F +M L P+ +T+ S+L AC
Sbjct: 459 PNKNVI------SWTSIILGLRLNYRSFEALFFFQQMI-LSLKPNSVTLVSVLSACA 508
>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
Length = 605
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 86/168 (51%), Gaps = 21/168 (12%)
Query: 8 QLRFTFYNSQPIQNLYN---------------EALVAFDFLQNNTNFRIRPSTYACLIST 52
Q ++ + P++NL + +AL F + + + PST + ++
Sbjct: 183 QKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLG 242
Query: 53 CSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIES 112
CS+L +L GR+VH + + + +L+MY KCG L+DA + DEM +
Sbjct: 243 CSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEM------HT 296
Query: 113 PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
D+ +WNA+I+G A +A+ LF +M+D ++PD +T+ ++L AC
Sbjct: 297 KDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTAC 344
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 44 STYACLIS---TCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
+TY CL++ S L R++ D I PD V N +L+ + CG ++ A V
Sbjct: 39 TTYNCLLAGYAKASGPGRLADARRLFDSI----PHPDAVSYNTLLSCHFACGDIDGAWRV 94
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
MP R D+ SWN +++G++ EA ++F M R +
Sbjct: 95 FSTMPVR------DVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAV 135
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 71 SSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN 130
++ + D +L +++ Y G+++ A MP RN L SWNA++AG S
Sbjct: 159 NAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRN------LVSWNAVVAGYVKNSR 212
Query: 131 ANEAMSLFSEMRDRELI-PDGLTVRSLLCACTSPS 164
A +A+ +F M + ++ P+ T+ S+L C++ S
Sbjct: 213 AGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLS 247
Score = 38.9 bits (89), Expect = 0.67, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+ S+ DV N +++ K G++E+A + MP RN + SWNA++A AS
Sbjct: 94 VFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAV------SWNAMVAARASS 147
Query: 129 SNANEAMSLF 138
+ A +LF
Sbjct: 148 GDMGAAENLF 157
>gi|449443954|ref|XP_004139740.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g09040, mitochondrial-like [Cucumis sativus]
Length = 1441
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 83/149 (55%), Gaps = 10/149 (6%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
QN + +AL F Q+ + I P + +A ++ C+ + SLQ G+++H I + D
Sbjct: 692 QNHHEKAL---QFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMD 748
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + +++MY KCG ++ + V EMP+RN ++ SWN++I G+A A EA+ +
Sbjct: 749 EVTCSSLIDMYAKCGDVKGSLQVFREMPRRN-----NVISWNSMIVGLAKNGYAEEALEI 803
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNV 166
F +M + +IPD +T +L AC+ V
Sbjct: 804 FKQMEQQSIIPDEVTFLGVLSACSHAGRV 832
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ + S C+SL L G ++H ++ +K ++ + N +++MY K G+L++AR
Sbjct: 412 TFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEAR------ 465
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
Q +++ D SWNAII G +EA +F M ++PD +++ S++ AC
Sbjct: 466 KQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACA 522
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 6/140 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ E ++F T + S+ ++S +SL L G VH +V + +
Sbjct: 289 FAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGS 348
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++NMY KC ++ A+ V + + +RN++ WNA++ G A A E M FS M+
Sbjct: 349 ALVNMYAKCSKMDAAKQVFNSLGERNIV------LWNAMLGGFAQNGLAQEVMEFFSCMK 402
Query: 143 DRELIPDGLTVRSLLCACTS 162
PD T S+ AC S
Sbjct: 403 RHGPQPDEFTFTSIFSACAS 422
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 38 NFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
N +RP+ T+A ++S CS L+ + GR+VH + + Q +++MY KC L
Sbjct: 135 NHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLR 194
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
DAR+V D D SW A+IAG EA+ +F M+ PD +T+ +
Sbjct: 195 DARLVFDGALNL------DTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVT 248
Query: 156 LLCA 159
++ A
Sbjct: 249 VVNA 252
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 13/145 (8%)
Query: 19 IQNLYN-EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQ 75
+Q YN EA F + +N + P + A ++S C++++ L+ G++ H ++
Sbjct: 487 VQEEYNDEAFFMFRRMVSNG---VLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLD 543
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
+ +++MY KCG + AR V MP RNV+ S NA+IAG + + EA+
Sbjct: 544 TSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVV------SVNALIAGY-TMGHLEEAI 596
Query: 136 SLFSEMRDRELIPDGLTVRSLLCAC 160
LF E++ L P +T LL C
Sbjct: 597 HLFQEIQMVGLKPTEVTFAGLLDGC 621
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 10/142 (7%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSK--SQPDVVLQNYI 84
A Q ++P+ T+A L+ C L LGR++H ++ S ++V + +
Sbjct: 595 AIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLL 654
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
C + R V E + L W A+I+G A ++ +A+ + MR
Sbjct: 655 ------CLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSD 708
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
++PD S+L AC S++
Sbjct: 709 NILPDQAAFASVLRACAGMSSL 730
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 56 LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDL 115
L++L + +H L +L N I+++Y KCG+++ A+ + E D+
Sbjct: 54 LQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRL------EKKDV 107
Query: 116 ASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+WN++++ + F M + E+ P+ T +L AC+ +V
Sbjct: 108 FAWNSVLSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDV 158
>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like, partial [Vitis vinifera]
Length = 621
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 47/106 (44%), Positives = 62/106 (58%), Gaps = 8/106 (7%)
Query: 42 RPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RPS TY+ L+ C LR+L G KVH H +S P VV+ N IL+MY KC SL +A+
Sbjct: 86 RPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKR 145
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+ DEM +R DL SWN +I+G A EA LF +M +R+
Sbjct: 146 LFDEMAER------DLCSWNIMISGYAKAGRLQEARKLFDQMTERD 185
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 6/138 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ EAL F +Q + NF+ T + ++ ++++SL LG+++H HIL D V+ +
Sbjct: 202 HEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWS 261
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+ +MYGKCGS+ +AR + D+ R+V+ SW A+I E +LFS++
Sbjct: 262 ALSDMYGKCGSIGEARHIFDKTVDRDVV------SWTAMIDRYFKEGRREEGFALFSDLL 315
Query: 143 DRELIPDGLTVRSLLCAC 160
+ P+ T +L AC
Sbjct: 316 KSGIWPNEFTFSGVLNAC 333
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ +++ C+ + +LG++VH ++ P + +++MY KCG++++AR V + M
Sbjct: 325 TFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGM 384
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P+ PDL SW ++I+G A +EA+ F + PD +T +L ACT
Sbjct: 385 PR------PDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACT 435
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 47/144 (32%), Positives = 83/144 (57%), Gaps = 17/144 (11%)
Query: 23 YNEALVAFDFLQNNTNFR---IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
Y EALV F T+ R ++P T+ ++ CS L L+ G+++H+ I+ SK + +
Sbjct: 390 YLEALVIF------TDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEIN 443
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V+ +L+MY KCG++++A + +++P+R D SW ++IA S A EA+ L
Sbjct: 444 EVVMGALLDMYAKCGAVDEALHIFNQLPER------DFVSWTSMIAAYGSHGQAFEALKL 497
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F +M+ + PD +T ++L AC+
Sbjct: 498 FEKMQQSDAKPDKVTFLAILSACS 521
Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
++ E L F L + + TY ++ CS L + G+ VH H++ S DVV+
Sbjct: 85 IFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVM 144
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+ + MY KC EDA + DEMP+R D+ASWN +I+ +A+ LF EM
Sbjct: 145 SSAVGMYAKCNVFEDAIKLFDEMPER------DVASWNNVISCYYQDGQPEKALELFEEM 198
Query: 142 RDRELIPDGLTVRSLLCAC 160
+ PD +T+ +++ +C
Sbjct: 199 KVSGFKPDSVTLTTVISSC 217
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/123 (32%), Positives = 74/123 (60%), Gaps = 8/123 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
IRP+ T + ++ CS +LQLG+ +H +I+ ++ + D+ + + ++++Y KCG++ A
Sbjct: 304 IRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAE 363
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V MP+ NV+ SWN +I+G + EA+ +F++MR + PD +T S+L
Sbjct: 364 NVFQNMPKTNVV------SWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLP 417
Query: 159 ACT 161
AC+
Sbjct: 418 ACS 420
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 74/130 (56%), Gaps = 6/130 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
+ F+ T +IS+C+ L L+ G+++H ++ S D + + +++MYGKCG LE
Sbjct: 201 SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEM 260
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
A+ V +++ ++NV+ SWN++IAG + ++ + LF M + + P T+ S+
Sbjct: 261 AKEVFEQIQRKNVV------SWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSI 314
Query: 157 LCACTSPSNV 166
L AC+ N+
Sbjct: 315 LMACSRSVNL 324
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 8/122 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+ TC + L+ G+ +H I+S Q ++ L ++N+Y C + A++V
Sbjct: 9 LLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVF------Q 62
Query: 109 VIESP-DLASWNAIIAGVASPSNANEAMSLFSEMRDRE-LIPDGLTVRSLLCACTSPSNV 166
IE+P D+ WN ++A E + +F + L PD T S+L AC+ V
Sbjct: 63 TIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRV 122
Query: 167 LY 168
Y
Sbjct: 123 GY 124
>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
Length = 583
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 6/125 (4%)
Query: 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
R Y I+ C R+L GR+VH +++++ +P V L ++ MY +CG+L+DAR V
Sbjct: 9 RFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVL 68
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
D MP+R+V+ SW +I+G + EA+ LF +M IP+ T+ ++L +C+
Sbjct: 69 DRMPERSVV------SWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCS 122
Query: 162 SPSNV 166
P ++
Sbjct: 123 GPQSI 127
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 69/122 (56%), Gaps = 7/122 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L++ S L SL G++VH IL + V LQN +++MY KCG L +R V D M
Sbjct: 214 TFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNM 273
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+R+V+ SWNA++ G +E +SLF ++ +E+ PD +T+ ++L C+
Sbjct: 274 LERSVV------SWNAMLMGYGRHGLGHEVISLFKDLH-KEVKPDSVTLLAVLSGCSHGG 326
Query: 165 NV 166
V
Sbjct: 327 LV 328
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 71/124 (57%), Gaps = 6/124 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++++CS +S+ G++VH ++ + + + + + +L+MY K ++++AR V D +
Sbjct: 113 TLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTL 172
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P+R+V+ S AII+G A EA+ LF ++ + + +T +L+ A + +
Sbjct: 173 PERDVV------SCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLA 226
Query: 165 NVLY 168
++ Y
Sbjct: 227 SLDY 230
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 81/142 (57%), Gaps = 8/142 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F ++ + R S AC +S+C+ + +L+LG+++H ++ + Q + N +
Sbjct: 388 EALHLFIKMKRDGGILNR-SALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNAL 446
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
L MYGKCGS+E+A V +++ ++ D+ SWN +IAG A EA++LF M+
Sbjct: 447 LAMYGKCGSIEEAFDVFEDITEK------DIVSWNTMIAGYARHGFGKEALALFESMK-M 499
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
+ PD +T+ +L AC+ V
Sbjct: 500 TIKPDDVTLVGVLSACSHTGFV 521
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 27/170 (15%)
Query: 13 FYNSQPIQNLYNEALVAFDFLQNNT------NFRIRPS----TYACLISTCSSLRSLQLG 62
+ PI++++ + F+QN F P ++ +I+ + ++
Sbjct: 268 LFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKA 327
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
R++ D + S + N ++ Y +CG+++ A+++ DEMPQR+ I SW A+I
Sbjct: 328 RELFDQMPSRNTSS----WNTMVTGYAQCGNIDQAKILFDEMPQRDCI------SWAAMI 377
Query: 123 AGVASPSNANEAMSLFSEMRDRELIPDG--LTVRSLLCACTSPSNVLYLD 170
+G A + EA+ LF +M+ DG L +L CA +S + + L+
Sbjct: 378 SGYAQSGQSEEALHLFIKMK-----RDGGILNRSALACALSSCAEIAALE 422
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 14/115 (12%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY +IS S RKV + + D++ N +L+ Y K G+L AR + ++M
Sbjct: 93 TYNAMISGYLSNNKFDCARKVFEKM----PDRDLISWNVMLSGYVKNGNLSAARALFNQM 148
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
P+++V+ SWNA+++G A EA +F +M L+ + ++ LL A
Sbjct: 149 PEKDVV------SWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISWNGLLSA 193
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+ SK ++V N ++ Y + L+DAR + D MP R+ I SWN +I G A
Sbjct: 206 LFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKI------SWNIMITGYAQN 259
Query: 129 SNANEAMSLFSEMRDRELIP 148
+EA LF E+ R++
Sbjct: 260 GLLSEARRLFEELPIRDVFA 279
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++ CL+ + L R + D + D + N ++ Y + G L +AR + +E+
Sbjct: 217 SWNCLMGGYVRKKRLDDARSLFDRM----PVRDKISWNIMITGYAQNGLLSEARRLFEEL 272
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
P R+V +W A+++G +EA +F EM ++
Sbjct: 273 PIRDVF------AWTAMVSGFVQNGMLDEATRIFEEMPEK 306
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V N +++ Y + AR V ++MP R DL SWN +++G N + A +L
Sbjct: 91 TVTYNAMISGYLSNNKFDCARKVFEKMPDR------DLISWNVMLSGYVKNGNLSAARAL 144
Query: 138 FSEMRDRELI 147
F++M +++++
Sbjct: 145 FNQMPEKDVV 154
Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118
++ RK+ D +L + N +L+ Y + G +EDAR + D ++ SW
Sbjct: 169 VEEARKIFDQMLVKNE----ISWNGLLSAYVQNGRIEDARRLFDSKMDWEIV------SW 218
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELI 147
N ++ G ++A SLF M R+ I
Sbjct: 219 NCLMGGYVRKKRLDDARSLFDRMPVRDKI 247
>gi|242069791|ref|XP_002450172.1| hypothetical protein SORBIDRAFT_05g001460 [Sorghum bicolor]
gi|241936015|gb|EES09160.1| hypothetical protein SORBIDRAFT_05g001460 [Sorghum bicolor]
Length = 521
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 8/136 (5%)
Query: 26 ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
+L F +Q FR ST+ ++ CS L S +LG +VH + S D+ + + ++
Sbjct: 251 SLEVFKAMQQ-AGFRPTVSTFVSVLGACSLLSSPELGEQVHCQGMKSGLVLDIKVGSALV 309
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD-R 144
+MY KCG +ED R + ++MP+RNVI +W ++I G + EA+ LF+EMR+ R
Sbjct: 310 DMYAKCGRVEDGRRIFNQMPERNVI------TWTSMIDGYGKNGLSEEALQLFAEMRERR 363
Query: 145 ELIPDGLTVRSLLCAC 160
++ P+ T S+L AC
Sbjct: 364 DVRPNHATFLSILSAC 379
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 26/127 (20%)
Query: 61 LGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI---------- 110
+ R+VH +L S +Q D +L +++ Y K GSL AR V MP R+V+
Sbjct: 152 VAREVHARVLRSVAQSDEILFAALVDAYVKSGSLAYARRVHGAMPVRSVVCSTALVVGCM 211
Query: 111 ---------------ESPDLASWNAIIAGVASPSNANE-AMSLFSEMRDRELIPDGLTVR 154
E D+ ++NA++ G + + E ++ +F M+ P T
Sbjct: 212 NEGLFEDAEAIFEEMEGKDVVAYNAMVEGYSKTEDTAEGSLEVFKAMQQAGFRPTVSTFV 271
Query: 155 SLLCACT 161
S+L AC+
Sbjct: 272 SVLGACS 278
>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 615
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 6/125 (4%)
Query: 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
R Y I+ C R+L GR+VH +++++ +P V L ++ MY +CG+L+DAR V
Sbjct: 41 RFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVL 100
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
D MP+R+V+ SW +I+G + EA+ LF +M IP+ T+ ++L +C+
Sbjct: 101 DRMPERSVV------SWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCS 154
Query: 162 SPSNV 166
P ++
Sbjct: 155 GPQSI 159
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 69/122 (56%), Gaps = 7/122 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L++ S L SL G++VH IL + V LQN +++MY KCG L +R V D M
Sbjct: 246 TFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNM 305
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+R+V+ SWNA++ G +E +SLF ++ +E+ PD +T+ ++L C+
Sbjct: 306 LERSVV------SWNAMLMGYGRHGLGHEVISLFKDLH-KEVKPDSVTLLAVLSGCSHGG 358
Query: 165 NV 166
V
Sbjct: 359 LV 360
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 71/124 (57%), Gaps = 6/124 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++++CS +S+ G++VH ++ + + + + + +L+MY K ++++AR V D +
Sbjct: 145 TLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTL 204
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P+R+V+ S AII+G A EA+ LF ++ + + +T +L+ A + +
Sbjct: 205 PERDVV------SCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLA 258
Query: 165 NVLY 168
++ Y
Sbjct: 259 SLDY 262
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 27/156 (17%)
Query: 39 FRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
F I P Y C ++ CS L ++ G+ VH ++ Q ++ LQN I+++Y CG +
Sbjct: 107 FDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGV 166
Query: 97 ARVVSDEMPQRNVI-----------------------ESPD--LASWNAIIAGVASPSNA 131
AR V D+MPQR+VI E P+ + SW ++I G A +
Sbjct: 167 ARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKS 226
Query: 132 NEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
EA+ LF EM D L+P+ +TV ++L AC N++
Sbjct: 227 KEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLV 262
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 73/122 (59%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ C+ + +L LGR++HD S + ++ + N +++MY KCG LEDA + D M
Sbjct: 247 TVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNM 306
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+R V+ SW+A+IAG+A+ A +A++LF++M + + P+ +T +L AC+
Sbjct: 307 EERTVV------SWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMG 360
Query: 165 NV 166
V
Sbjct: 361 MV 362
>gi|302818178|ref|XP_002990763.1| hypothetical protein SELMODRAFT_132289 [Selaginella moellendorffii]
gi|300141501|gb|EFJ08212.1| hypothetical protein SELMODRAFT_132289 [Selaginella moellendorffii]
Length = 661
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 48/123 (39%), Positives = 75/123 (60%), Gaps = 10/123 (8%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPD---VVLQNYILNMYGKCGSLEDARVV 100
STYA L+ C+ L++L G+++H HILSS S ++ N+++NMYGKCG +E+AR V
Sbjct: 15 STYARLLQACARLKALSQGQRIHAHILSSHSSSGSSSTLVLNHLINMYGKCGRVEEARAV 74
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR-DRELIPDGLTVRSLLCA 159
M E P+L SWN IIA A+ + A+++F M+ + ++PD ++ S+ A
Sbjct: 75 FASM------EHPNLVSWNTIIAAHAAAGDGRGALAVFRAMQLEASVVPDRVSFTSVANA 128
Query: 160 CTS 162
C S
Sbjct: 129 CGS 131
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 67/120 (55%), Gaps = 8/120 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD--VVLQNYILNMYGKCGSLEDARVVSD 102
T +++ C+ +L G+ +HD + + + D V + ++ MY KCGS+EDAR+V D
Sbjct: 229 TIVTVVNLCAEFAALDQGKAIHDRCIHAAAIRDDPVQIGTSLVTMYAKCGSIEDARLVFD 288
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
M +RN + SWNA+++G + + + + LF M + P+ +T+ ++ AC+S
Sbjct: 289 SMAERNEV------SWNAMLSGYSQHGHGAQLLHLFRAMLQGGVQPNAVTLLPVVNACSS 342
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 13/119 (10%)
Query: 49 LISTCSSLRSLQLGRKVHDHI-LSSKSQPDVVLQN------YILNMYGKCGSLEDARVVS 101
+++ CSSL L+ +H I L S+ P + L+ + +MY +CGS+++A V
Sbjct: 336 VVNACSSLAQLRQADDIHGRIVLQSRDTPALSLRTNAVVGCALCSMYARCGSIDEAAAVF 395
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
M QRNV+ SWNA+I A A+++F M+ + PD +T+ S+L AC
Sbjct: 396 AGMEQRNVV------SWNAMIGAYAQHGRGRLALAVFGGMQQHGVKPDAITLISVLDAC 448
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 12/139 (8%)
Query: 26 ALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
AL F +Q + ++P T ++ C+ + G +VH L + + L N
Sbjct: 422 ALAVFGGMQQHG---VKPDAITLISVLDACAGAGDARRGSQVHGWSLQLQLR-SAALDNA 477
Query: 84 ILNMYGKCGSLEDARVVSDEM-PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+NMY K G + AR V + M QR I SW+A++A A +A EA LF M+
Sbjct: 478 AVNMYAKSGRVAAAREVFEAMDSQRRTI-----MSWSAMVAAYAGVGHAEEAFRLFHAMQ 532
Query: 143 DRELIPDGLTVRSLLCACT 161
+ P+ +T+ S+L AC+
Sbjct: 533 REGVRPNHVTLISILGACS 551
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 15/143 (10%)
Query: 26 ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
AL F +Q + ++ + + C S R R +H + + DV++ ++
Sbjct: 102 ALAVFRAMQLEASVVPDRVSFTSVANACGSARE---ARIIHASVAARGFLDDVIVCTALI 158
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
Y +CGSL +AR D M R + ++ +W A+IAG A + EA+ LF M + +
Sbjct: 159 TAYCRCGSLGEARATFDAMAPR----ARNVVTWTALIAGYAQSGHLEEALDLFWSMAEHD 214
Query: 146 --------LIPDGLTVRSLLCAC 160
+ P+ +T+ +++ C
Sbjct: 215 GGGGETWSVAPNAVTIVTVVNLC 237
>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
Length = 824
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 41/121 (33%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
+ S +AC++STC+ + +L+ G ++H ++ + + N +L MY KCGS+E+A
Sbjct: 450 VNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSA 509
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+EM +R+V+ SWN +IAG A EA+ +F MR PD +T+ +L AC
Sbjct: 510 FEEMEERDVV------SWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAAC 563
Query: 161 T 161
+
Sbjct: 564 S 564
Score = 43.9 bits (102), Expect = 0.026, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
+Y +IS+ ++ + L R H + D V N +L Y + G +++AR + D
Sbjct: 202 SYNVMISSHANHGLVSLAR----HYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSR 257
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
+ + I SWNA++AG S EA +F++M R+++
Sbjct: 258 TEWDAI------SWNALMAGYVQRSQIEEAQKMFNKMPQRDVV 294
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DV I++ Y + G LE+A+ V D MP +N + SWNA++A EA
Sbjct: 323 DVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAV------SWNAMMAAYVQRRMMEEAKE 376
Query: 137 LFSEMRDREL 146
LF M R +
Sbjct: 377 LFDAMPCRNV 386
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
Q DVV N +++ Y + G + +AR + D P R+V +W AI++G A EA
Sbjct: 290 QRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVF------TWTAIVSGYAQNGMLEEA 343
Query: 135 MSLFSEMRDRELI 147
+F M D+ +
Sbjct: 344 KRVFDAMPDKNAV 356
Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+V N +L Y + G L++AR + MPQ+ D SW A++A + + E +
Sbjct: 385 NVASWNTMLTGYAQAGMLDEARAIFGMMPQK------DAVSWAAMLAAYSQIGFSEETLQ 438
Query: 137 LFSEM 141
LF EM
Sbjct: 439 LFKEM 443
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 14/105 (13%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD--VVLQNYILNMYGKCGSLEDARVVSD 102
T+ ++S + L+ ++V D + PD V N ++ Y + +E+A+ + D
Sbjct: 326 TWTAIVSGYAQNGMLEEAKRVFD------AMPDKNAVSWNAMMAAYVQRRMMEEAKELFD 379
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
MP RNV ASWN ++ G A +EA ++F M ++ +
Sbjct: 380 AMPCRNV------ASWNTMLTGYAQAGMLDEARAIFGMMPQKDAV 418
>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Vitis vinifera]
Length = 872
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 70/124 (56%), Gaps = 8/124 (6%)
Query: 41 IRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
IRP Y C++ TC L L GR+VH H++ + DV + N ++ MY KCG + AR
Sbjct: 191 IRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSAR 250
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+V D MP+R+ I SWNA+I+G E + LF MR+ + PD +T+ S++
Sbjct: 251 LVFDRMPRRDRI------SWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVIS 304
Query: 159 ACTS 162
AC +
Sbjct: 305 ACEA 308
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 9/142 (6%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F F Q + + T ++S C+ + +L G+++H H L + D L N +
Sbjct: 481 EAL--FFFQQMILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNAL 538
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
L+MY +CG +E A Q N E D+ASWN ++ G A A+ LF +M +
Sbjct: 539 LDMYVRCGRMEPA------WNQFNSCEK-DVASWNILLTGYAQQGKGGLAVELFHKMIES 591
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
++ PD +T SLLCAC+ V
Sbjct: 592 DVNPDEITFTSLLCACSRSGMV 613
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T +IS C +L +LGR+VH +++ + +V + N ++ M+ G ++A +V +M
Sbjct: 298 TMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKM 357
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
E DL SW A+I+G +A+ ++ M ++PD +T+ S+L AC
Sbjct: 358 ------EFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAG 409
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 7/137 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+AL+ D +Q + TY L+ C R+ G +VH ++ + ++ V L N
Sbjct: 76 EKALIHLDSMQE-LQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNA 134
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+L+M+ + G L +A V +M +R DL SWN ++ G A +EA++L+ M
Sbjct: 135 LLSMFVRFGDLVEAWYVFGKMAER------DLFSWNVLVGGYAKAGYFDEALNLYHRMLW 188
Query: 144 RELIPDGLTVRSLLCAC 160
+ PD T +L C
Sbjct: 189 VGIRPDVYTFPCVLRTC 205
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++S C+ L L G +H+ + V++ N +++MY KC ++ A V +
Sbjct: 399 TIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRI 458
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P +NVI SW +II G+ + EA+ F +M L P+ +T+ S+L AC
Sbjct: 459 PNKNVI------SWTSIILGLRLNYRSFEALFFFQQMI-LSLKPNSVTLVSVLSACA 508
>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
Length = 805
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 80/138 (57%), Gaps = 9/138 (6%)
Query: 27 LVAFDFLQNNTNF-RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+V D + NT ++P T AC++ C+SL +L+ G+++H +IL + D + N
Sbjct: 413 MVVKDIISWNTMIGELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANA 472
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++++Y KCG L AR++ D +P S DL SW +I+G NEA++ F+EMRD
Sbjct: 473 LVDLYVKCGVLGLARLLFDMIP------SKDLVSWTVMISGYGMHGYGNEAIATFNEMRD 526
Query: 144 RELIPDGLTVRSLLCACT 161
+ PD ++ S+L AC+
Sbjct: 527 AGIEPDEVSFISILYACS 544
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T ++ C++ +L LG+ VH + S + + N +L+MY KCG L+ A V ++
Sbjct: 252 ATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEK 311
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
M +RNV+ SW ++IAG ++ A+ L +M + D + S+L AC
Sbjct: 312 MGERNVV------SWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHAC 362
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
+ TY+ ++ C+ +SL G+KVH I S+ D VL ++++Y CG L++ R V
Sbjct: 97 LETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRV 156
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
D M ++NV WN +++ A + E++ LF M ++
Sbjct: 157 FDTMEKKNVY------LWNFMVSEYAKIGDFKESICLFKIMVEK 194
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 27/116 (23%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ C+ SL G+ VHD+I ++ + ++ + N +++MY KCGS++ A V M ++
Sbjct: 358 ILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKD 417
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+I SWN +I EL PD T+ +L AC S S
Sbjct: 418 II------SWNTMIG---------------------ELKPDSRTMACILPACASLS 446
>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1582
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 71/124 (57%), Gaps = 8/124 (6%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
+++P T+A L+ CS L +L+ GR++H + + D + +++MY KCG++EDA
Sbjct: 1205 KVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDA 1264
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R + + +ASWNA+I G+A NA EA+ F EM+ R + PD +T +L
Sbjct: 1265 RGLFKR------TNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVL 1318
Query: 158 CACT 161
AC+
Sbjct: 1319 SACS 1322
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 67/125 (53%), Gaps = 6/125 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++S + L L+LG+++H ++ S V + N ++NMY K GS+ AR V +M
Sbjct: 908 TFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQM 967
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+ DL SWN +I+G A ++ +F ++ L+PD TV S+L AC+S
Sbjct: 968 NE------VDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLG 1021
Query: 165 NVLYL 169
+L
Sbjct: 1022 GGCHL 1026
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118
L LG++ H IL+S PD L N ++ MY KCGSL AR + D P S DL +W
Sbjct: 642 LPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPD----TSRDLVTW 697
Query: 119 NAIIAGVASPSNANEAMSLFSEMR 142
NAI++ A A + LF +R
Sbjct: 698 NAILS--AHADKARDGFHLFRLLR 719
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
L + R T A L L+ G+++ ++ D+ + + +L+MY KCG
Sbjct: 1099 LMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCG 1158
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
+E AR + +E+P SPD +W +I+G A+ + MR ++ PD T
Sbjct: 1159 EMESARRIFNEIP------SPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYT 1212
Query: 153 VRSLLCACT 161
+L+ AC+
Sbjct: 1213 FATLVKACS 1221
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 11/131 (8%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
T + P CL+S S +H + + Q DV + ++N+Y K G + +
Sbjct: 726 TRHTLAPVFKMCLLSASPSA-----AESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIRE 780
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
ARV+ D M R+V+ WN ++ EA+ LFSE L PD +T+ +L
Sbjct: 781 ARVLFDGMGLRDVV------LWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTL 834
Query: 157 LCACTSPSNVL 167
S NVL
Sbjct: 835 ARVVKSKQNVL 845
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 45 TYACLISTCSSLRS-LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T A ++ CSSL L ++H + + D + ++++Y K G +E+A +
Sbjct: 1009 TVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVN 1068
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+ DLASWNA++ G + +A+ L+ M++
Sbjct: 1069 Q------DGFDLASWNAMMHGYIVSGDFPKALRLYILMQE 1102
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 80/137 (58%), Gaps = 8/137 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F ++ + R S AC +S+C+ + +L+LG+++H ++ + Q + N +
Sbjct: 388 EALHLFIKMKRDGGILNR-SALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNAL 446
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
L MYGKCGS+E+A V +++ ++ D+ SWN +IAG A EA++LF M+
Sbjct: 447 LAMYGKCGSIEEAFDVFEDITEK------DIVSWNTMIAGYARHGFGKEALALFESMK-M 499
Query: 145 ELIPDGLTVRSLLCACT 161
+ PD +T+ +L AC+
Sbjct: 500 TIKPDDVTLVGVLSACS 516
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 27/170 (15%)
Query: 13 FYNSQPIQNLYNEALVAFDFLQNNT------NFRIRPS----TYACLISTCSSLRSLQLG 62
+ PI++++ + F+QN F P ++ +I+ + ++
Sbjct: 268 LFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKA 327
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
R++ D + S + N ++ Y +CG+++ A+++ DEMPQR+ I SW A+I
Sbjct: 328 RELFDQMPSRNTSS----WNTMVTGYAQCGNIDQAKILFDEMPQRDCI------SWAAMI 377
Query: 123 AGVASPSNANEAMSLFSEMRDRELIPDG--LTVRSLLCACTSPSNVLYLD 170
+G A + EA+ LF +M+ DG L +L CA +S + + L+
Sbjct: 378 SGYAQSGQSEEALHLFIKMK-----RDGGILNRSALACALSSCAEIAALE 422
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 14/115 (12%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY +IS S RKV + + D++ N +L+ Y K G+L AR + ++M
Sbjct: 93 TYNAMISGYLSNNKFDCARKVFEKM----PDRDLISWNVMLSGYVKNGNLSAARALFNQM 148
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
P+++V+ SWNA+++G A EA +F +M L+ + ++ LL A
Sbjct: 149 PEKDVV------SWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISWNGLLSA 193
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+ SK ++V N ++ Y + L+DAR + D MP R+ I SWN +I G A
Sbjct: 206 LFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKI------SWNIMITGYAQN 259
Query: 129 SNANEAMSLFSEMRDRELIP 148
+EA LF E+ R++
Sbjct: 260 GLLSEARRLFEELPIRDVFA 279
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++ CL+ + L R + D + D + N ++ Y + G L +AR + +E+
Sbjct: 217 SWNCLMGGYVRKKRLDDARSLFDRM----PVRDKISWNIMITGYAQNGLLSEARRLFEEL 272
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
P R+V +W A+++G +EA +F EM ++
Sbjct: 273 PIRDVF------AWTAMVSGFVQNGMLDEATRIFEEMPEK 306
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V N +++ Y + AR V ++MP R DL SWN +++G N + A +L
Sbjct: 91 TVTYNAMISGYLSNNKFDCARKVFEKMPDR------DLISWNVMLSGYVKNGNLSAARAL 144
Query: 138 FSEMRDRELI 147
F++M +++++
Sbjct: 145 FNQMPEKDVV 154
Score = 35.0 bits (79), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118
++ RK+ D +L + N +L+ Y + G +EDAR + D ++ SW
Sbjct: 169 VEEARKIFDQMLVKNE----ISWNGLLSAYVQNGRIEDARRLFDSKMDWEIV------SW 218
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELI 147
N ++ G ++A SLF M R+ I
Sbjct: 219 NCLMGGYVRKKRLDDARSLFDRMPVRDKI 247
>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial [Vitis vinifera]
Length = 623
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 9/143 (6%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
NEAL F ++ F +T ++ C+ L L+LGR+VH H+L K D++L N
Sbjct: 235 NEALNLFKRMKR-AGFLADQATLTSVLRACTGLALLELGRQVHVHVL--KFDQDLILNNA 291
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+++MY KCGSLEDA M +++VI SW+ ++AG+A + +A+ LF M++
Sbjct: 292 LIDMYCKCGSLEDANSAFSRMVEKDVI------SWSTMVAGLAQNGYSRQALELFESMKE 345
Query: 144 RELIPDGLTVRSLLCACTSPSNV 166
P+ +TV +L AC+ V
Sbjct: 346 SGSRPNYITVLGVLFACSHAGLV 368
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 11/124 (8%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP+ TY+ ++ C L +L R++H I+ + + DV +++ ++++Y K L++A
Sbjct: 151 VRPNMFTYSSVLRACDGLPNL---RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNAL 207
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V DEMP R DL WN+II G A S+ NEA++LF M+ + D T+ S+L
Sbjct: 208 GVFDEMPTR------DLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLR 261
Query: 159 ACTS 162
ACT
Sbjct: 262 ACTG 265
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 77/143 (53%), Gaps = 8/143 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+ A+ A D ++ + F TY+ LI CS+ ++Q G++VH+HI +P + + N
Sbjct: 37 HRAMRAMDAMERHGVF-ADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNT 95
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+LNMY K LE+A + DEMP+RNV+ SW +I+ ++ N ++A+ M
Sbjct: 96 LLNMYVKFNLLEEAEDLFDEMPERNVV------SWTTMISAYSNKLN-DKALKCLILMFR 148
Query: 144 RELIPDGLTVRSLLCACTSPSNV 166
+ P+ T S+L AC N+
Sbjct: 149 EGVRPNMFTYSSVLRACDGLPNL 171
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 31/164 (18%)
Query: 25 EALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
EAL AF ++ ++P ST+ C I +CS+L L GR+ H L +PD+ + +
Sbjct: 59 EALRAFSSMRK---LSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSS 115
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIE-------------------------SPDLAS 117
+++MY KCG L DAR + DE+ RN++ D+ S
Sbjct: 116 ALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVIS 175
Query: 118 WNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSLLCAC 160
WN+IIA A + E+M +F M +D E+ + +T+ ++L AC
Sbjct: 176 WNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLAC 219
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 6/140 (4%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+ E++ F + + T + ++ C+ S +LG+ +HD ++ + +V +
Sbjct: 188 MSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVG 247
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
I++MY KCG +E AR D M ++NV SW+A++AG +A EA+ +F EM
Sbjct: 248 TSIIDMYCKCGKVEMARKAFDRMREKNV------KSWSAMVAGYGMHGHAKEALEVFYEM 301
Query: 142 RDRELIPDGLTVRSLLCACT 161
+ P+ +T S+L AC+
Sbjct: 302 NMAGVKPNYITFVSVLAACS 321
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 74/154 (48%), Gaps = 39/154 (25%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE--- 95
+RP T +S C +R L+LGR++H + S V L N +++MY KCGSLE
Sbjct: 224 VRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAK 283
Query: 96 ----------------------------DARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127
DAR V DEMP+R+V WNA++ G
Sbjct: 284 SVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVF------PWNALMTGYVQ 337
Query: 128 PSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
EA+SLF EM++ ++PD +T+ +LL AC+
Sbjct: 338 CKQCKEALSLFHEMQEASVVPDEITMVNLLTACS 371
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 74/138 (53%), Gaps = 11/138 (7%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
EAL F +Q + + P T L++ CS L +L++G VH +I + V L
Sbjct: 343 EALSLFHEMQEAS---VVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGT 399
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG++E A + E+P++N + +W A+I G+A+ +ANEA+ F M
Sbjct: 400 SLIDMYAKCGNIEKAIHIFKEIPEKNAL------TWTAMICGLANHGHANEAIEHFRTMI 453
Query: 143 DRELIPDGLTVRSLLCAC 160
+ PD +T +L AC
Sbjct: 454 ELGQKPDEITFIGVLSAC 471
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 54/123 (43%), Gaps = 10/123 (8%)
Query: 42 RPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP T+ L+ C+ LR G H+L DV + N + G +EDAR
Sbjct: 122 RPDHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARR 181
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM--RDRELIPDGLTVRSLL 157
+ D P R DL SWN +I G N EA+ LF M D + PD +T+ + +
Sbjct: 182 LFDRSPVR------DLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAV 235
Query: 158 CAC 160
C
Sbjct: 236 SGC 238
>gi|145340387|ref|NP_193587.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122236144|sp|Q0WNP3.1|PP319_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18520
gi|110738662|dbj|BAF01256.1| hypothetical protein [Arabidopsis thaliana]
gi|332658657|gb|AEE84057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 617
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 67/123 (54%), Gaps = 6/123 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ CS ++L+ GR+VH ++ + DV + +++MY KCG + D R V D M
Sbjct: 286 TVCSILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGM 345
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
RN + +W +IIA A EA+SLF M+ R LI + LTV S+L AC S
Sbjct: 346 SNRNTV------TWTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVG 399
Query: 165 NVL 167
+L
Sbjct: 400 ALL 402
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 6/123 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ C S+ +L LG+++H I+ + + +V + + ++ +Y KCG DA V ++
Sbjct: 387 TVVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQL 446
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P R+V+ SW A+I+G +S + +EA+ EM + P+ T S L AC +
Sbjct: 447 PSRDVV------SWTAMISGCSSLGHESEALDFLKEMIQEGVEPNPFTYSSALKACANSE 500
Query: 165 NVL 167
++L
Sbjct: 501 SLL 503
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 75/142 (52%), Gaps = 9/142 (6%)
Query: 21 NLYNEALVAF-DFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
L +EA F D++++ F + CL++ CS +LGR+VH +++ +++
Sbjct: 162 GLEDEAFALFEDYVKHGIRF-TNERMFVCLLNLCSRRAEFELGRQVHGNMVKV-GVGNLI 219
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+++ ++ Y +CG L A D M +++VI SW A+I+ + + +A+ +F
Sbjct: 220 VESSLVYFYAQCGELTSALRAFDMMEEKDVI------SWTAVISACSRKGHGIKAIGMFI 273
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
M + +P+ TV S+L AC+
Sbjct: 274 GMLNHWFLPNEFTVCSILKACS 295
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A DFL+ + P+ TY+ + C++ SL +GR +H + + +V + + +++
Sbjct: 470 ALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIH 529
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG + +A V D MP++N L SW A+I G A EA+ L M
Sbjct: 530 MYAKCGFVSEAFRVFDSMPEKN------LVSWKAMIMGYARNGFCREALKLMYRMEAEGF 583
Query: 147 IPDGLTVRSLLCAC 160
D ++L C
Sbjct: 584 EVDDYIFATILSTC 597
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 35 NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSL 94
++++F YA L S ++L +++H L + N +++ + G L
Sbjct: 74 DSSSFDSERVDYALLAEWLQSSNGMRLIKRIHAMALKCFDDQVIYFGNNLISSCVRLGDL 133
Query: 95 EDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
AR V D MP++N + +W A+I G +EA +LF +
Sbjct: 134 VYARKVFDSMPEKNTV------TWTAMIDGYLKYGLEDEAFALFED 173
>gi|242035545|ref|XP_002465167.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
gi|241919021|gb|EER92165.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
Length = 564
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 46/144 (31%), Positives = 83/144 (57%), Gaps = 7/144 (4%)
Query: 19 IQN-LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+QN L NEA+ ++ +QN+ + T+ ++ S+L +LQ G ++H + + D
Sbjct: 347 MQNGLSNEAVRIYNDMQNHEGLKPIQGTFVSILPAYSNLGALQQGMRMHALSIKTGLNLD 406
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + ++++Y KCG L +A ++ + MP+R+ WNAIIAG+ + +A++L
Sbjct: 407 VYVSTCLIDLYAKCGKLVEAMLLFEHMPRRST------GPWNAIIAGLGVHGHGAKALNL 460
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
FS+M+ + PD +T SLL AC+
Sbjct: 461 FSQMQQEGIKPDNVTFVSLLAACS 484
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D++ N +++MY K ++ A++V D +P R+V+ SWN +I G +NEA+
Sbjct: 304 DIIAGNAVVDMYAKLSKIDAAQMVFDNLPDRDVV------SWNTLITGYMQNGLSNEAVR 357
Query: 137 LFSEMRDRE-LIPDGLTVRSLLCA 159
++++M++ E L P T S+L A
Sbjct: 358 IYNDMQNHEGLKPIQGTFVSILPA 381
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
P+V +++ Y + G + +A V DEMP+R D+ +WNA+++G+ + A +A
Sbjct: 99 HPNVFASGSLVHAYLRFGRVAEAYRVFDEMPER------DVPAWNAMLSGLCRNARAVDA 152
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCAC 160
++LF M + D +T+ S+L C
Sbjct: 153 VALFGRMVGEGVAGDAVTLSSVLPMC 178
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + ++ C L L +H + + ++ + N ++++YGK G L +AR V M
Sbjct: 170 TLSSVLPMCVLLGDRALALVMHVYAVKRGLSGELFVCNALIDVYGKLGMLVEARWVFGGM 229
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
R DL +WN+II+ A+ LF M + PD LT+ SL A
Sbjct: 230 ALR------DLVTWNSIISAYEQGGKVAAAVELFHGMMKSGVSPDVLTLVSLASA 278
>gi|255562657|ref|XP_002522334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538412|gb|EEF40018.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 507
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 63/106 (59%), Gaps = 6/106 (5%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
R PS Y+ LI +C R+L++G+KVHDHI S P +V+ N +L+MY KC L DA+
Sbjct: 77 RPSPSIYSSLIQSCLKNRALEVGKKVHDHIKLSGFIPGLVISNRLLDMYAKCNDLVDAQK 136
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+ +EM +R DL SWN +I+G A EA LF M +R+
Sbjct: 137 LFEEMGER------DLCSWNVLISGCAKMGLLKEARKLFDTMPERD 176
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 8/128 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I+P+ T+A +++ C+ L +G++VH H+ + P + +++MY KCG++ +A
Sbjct: 310 IKPNDFTFAGVLNACADLGVEGIGKQVHGHMTRADFDPFSFAASALVHMYSKCGNMVNAE 369
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V MPQ PDL SW ++IAG A + +EA+ F + PD +T +L
Sbjct: 370 RVFRGMPQ------PDLVSWTSLIAGYAQNGHPDEALQYFELLLKSGTRPDHITFVGVLS 423
Query: 159 ACTSPSNV 166
AC V
Sbjct: 424 ACAHAGLV 431
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 74/142 (52%), Gaps = 6/142 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
N +EAL + ++ N T + +++ +++ L++G+++H +I+ + D V
Sbjct: 190 HNRPHEALELYRLMKKCENLTSNKFTVSSVLAAAAAIPCLRIGKEIHGYIMRTGLDSDEV 249
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ + + +MYGKCGS+E+AR + D+M R+V+ +W A+I E LF+
Sbjct: 250 VWSALSDMYGKCGSIEEARHIFDKMVNRDVV------TWTAMIDRYFEDGRREEGFELFA 303
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
E+ + P+ T +L AC
Sbjct: 304 ELLRSGIKPNDFTFAGVLNACA 325
>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 609
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 83/144 (57%), Gaps = 13/144 (9%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+ +EA+ F ++ N + P+ T ++S C+S+ +L LG+++ ++ Q D+
Sbjct: 299 GMADEAISLFHSMKENG---VDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDI 355
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ +++MY KCGSLE A+ V ++MP++N ASWNA+I+ +AS A EA+SLF
Sbjct: 356 FVATALIDMYAKCGSLESAQRVFNDMPRKND------ASWNAMISALASHGKAKEALSLF 409
Query: 139 SEMRDR--ELIPDGLTVRSLLCAC 160
M D P+ +T SLL AC
Sbjct: 410 ERMSDEGGSARPNDITFVSLLSAC 433
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 6/138 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EA+ F L+ + F + ++ C L L+LGR V ++ + + + + +
Sbjct: 201 EAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSAL 260
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MY KCG L +R + D MP R D +WNA I+ A A+EA+SLF M++
Sbjct: 261 ISMYSKCGELVSSRRIFDGMPSR------DFITWNAAISAYAQNGMADEAISLFHSMKEN 314
Query: 145 ELIPDGLTVRSLLCACTS 162
+ P+ +T+ ++L AC S
Sbjct: 315 GVDPNKVTLTAVLSACAS 332
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ + C++L +++ R H + D N ++ MY +CG AR V DE+
Sbjct: 119 TFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEI 178
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE-LIPDGLTVRSLLCAC 160
++ DL SWN++++G A A EA+ +F +R+ PD +++ S+L AC
Sbjct: 179 TEK------DLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGAC 229
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 7/139 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y EAL+ F +Q + T A L+ C+ L +L+LG+ +H +I + DV L
Sbjct: 269 YEEALLLFREMQTK-GIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGT 327
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCGS+E A V EMP+++V+ +W A+I G+A A A+ F EM
Sbjct: 328 ALVDMYAKCGSIETAIQVFHEMPEKDVM------TWTALILGLAMCGQAENALQYFDEMH 381
Query: 143 DRELIPDGLTVRSLLCACT 161
+ + PD +T +L AC+
Sbjct: 382 IKGVKPDAITFVGVLAACS 400
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 6/138 (4%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
NEA+ FD + + N + T +++ C+ R L + +++H++I VVL
Sbjct: 168 NEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTV 227
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++++Y KCG ++ AR + D+ ++N L SWN +I G SN EA+ LF EM+
Sbjct: 228 LMDVYCKCGCVQLARDLFDKAQEKN------LFSWNIMINGHVEDSNYEEALLLFREMQT 281
Query: 144 RELIPDGLTVRSLLCACT 161
+ + D +T+ SLL ACT
Sbjct: 282 KGIKGDKVTMASLLLACT 299
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
+NL+ EAL+ F Q + P Y S S R+ G+++H H D
Sbjct: 66 KNLHQEALL---FYQEMMVQGLIPDRYT-FPSLFKSCRNSSEGKQIHCHSTKLGFASDTY 121
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
QN ++NMY CG L AR V D+M + V+ SW +I A NEA+ LF
Sbjct: 122 AQNTLMNMYSNCGCLVSARKVFDKMEDKTVV------SWATMIGVHAQWDQPNEAVRLFD 175
Query: 140 EMRDRELI-PDGLTVRSLLCAC 160
M E + P+ +T+ ++L AC
Sbjct: 176 RMMKSENVKPNEVTLVNVLTAC 197
Score = 40.4 bits (93), Expect = 0.28, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL 151
GSL+ AR+V ++P +P + N+II G + EA+ + EM + LIPD
Sbjct: 36 GSLQYARLVFSQIP------NPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRY 89
Query: 152 TVRSLLCACTSPS 164
T SL +C + S
Sbjct: 90 TFPSLFKSCRNSS 102
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y +A+ F +Q+ T ++S C+ L +L LG+ +H I +K + + L N
Sbjct: 240 YADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGN 299
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+ +MY KCG + +A+ V EM +R+VI SW+ II G+A ANEA + F+EM
Sbjct: 300 ALADMYAKCGCVLEAKGVFHEMHERDVI------SWSIIIMGLAMYGYANEAFNFFAEMI 353
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
+ L P+ ++ LL ACT V
Sbjct: 354 EDGLEPNDISFMGLLTACTHAGLV 377
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 26/143 (18%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C+ L + G+KVH + + ++ ++N ++++Y K G A+ + DEM
Sbjct: 129 TFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEM 188
Query: 105 PQRNVIE-------------------------SPDLASWNAIIAGVASPSNANEAMSLFS 139
R+V+ +L SW+ +I+G A +A+ LF
Sbjct: 189 VVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFR 248
Query: 140 EMR-DRELIPDGLTVRSLLCACT 161
+M+ + L P+ +T+ S+L AC
Sbjct: 249 QMQHEGGLAPNDVTLVSVLSACA 271
>gi|356500039|ref|XP_003518842.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15690-like [Glycine max]
Length = 591
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 6/121 (4%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+ L C +SL+ +K HDH L S + D+ L N ++ MYG C S+ DAR V D MP
Sbjct: 249 FDLLFDLCGQSKSLEDAKKAHDHFLQSTFRSDLTLNNKVIEMYGNCKSMTDARRVFDHMP 308
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165
R D+ SW+ ++ G A +N ++A+ LF +M + L T+ ++L AC S +
Sbjct: 309 NR------DMGSWHLMLRGYAYNTNGDDALQLFEQMNELGLEITSETLLAVLSACASAED 362
Query: 166 V 166
V
Sbjct: 363 V 363
>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 1004
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 86/162 (53%), Gaps = 20/162 (12%)
Query: 14 YNSQPIQNLYNEALVAFDFLQNNTN------FR------IRPS--TYACLISTCSSLRSL 59
+N +++L+ ++ ++ Q N FR ++P+ T A +S CSSL SL
Sbjct: 574 FNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASL 633
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
+ G+++H + S D+ + + +++MY KCG +E+A + + + +R+ I +WN
Sbjct: 634 EGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTI------AWN 687
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
II G A N+A++ F M D + PDG+T +L AC+
Sbjct: 688 TIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACS 729
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 6/116 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y+ ++ C+S RSL + + +H I+ PD L ++N+Y KC AR+V +MP
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R+V+ SW A+I G+ + AN+++ LF EM++ ++P+ T+ + L AC+
Sbjct: 175 DRDVV------SWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACS 224
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ +CS L + GR+VH HI+ ++ + + +++MY KC LEDA V + +
Sbjct: 518 TFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRL 577
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
R DL +W II A + +A++ F +M+ + P+ T+ L C+S
Sbjct: 578 SVR------DLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSS 629
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ C++ ++L+ G+ +H I+ + + + +++MY KCG DA V
Sbjct: 316 TLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVF--- 372
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
I+ PD+ W+A+I + + E++ LF MR + +P+ T+ SLL A T+
Sbjct: 373 ---KTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTG 429
Query: 165 NVLY 168
N+ Y
Sbjct: 430 NLQY 433
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T L+S ++ +LQ G+ +H + + DV + N ++ MY K G + D + + M
Sbjct: 417 TICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM 476
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
R DL SWNA ++G+ + +++F M + IP+ T S+L +C+
Sbjct: 477 VDR------DLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLF 530
Query: 165 NVLY 168
+V Y
Sbjct: 531 DVHY 534
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ N+++ F +QN I P+ T A + CS +L LG+++H D
Sbjct: 191 EGFANDSIYLFQEMQNEG---IMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLD 247
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ + + ++++Y KCG +E A + MP++N + +WN ++ G A + + L
Sbjct: 248 LFVGSALVDLYAKCGEIELASKMFIGMPEQNDV------TWNVLLNGYAQRGDVTGVLKL 301
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNV 166
F M + ++ + T+ ++L C + N+
Sbjct: 302 FCSMMELDVKCNEFTLTTVLKGCANSKNL 330
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 75/137 (54%), Gaps = 7/137 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
EAL F +Q T + + CL S CS L +L +G +H +I K DV L
Sbjct: 373 KEALALFHEMQIRTIEPDKVTMVNCL-SACSQLGALDVGIWIHHYIERHKLSIDVALGTA 431
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+++MY KCG++ A V +E+PQRN + +W A+I G+A NA +A+S FS+M
Sbjct: 432 LVDMYAKCGNIARALQVFEEIPQRNCL------TWTAVICGLALHGNAQDALSYFSKMIH 485
Query: 144 RELIPDGLTVRSLLCAC 160
++PD +T +L AC
Sbjct: 486 IGIVPDEITFLGVLSAC 502
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 27/163 (16%)
Query: 26 ALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
A+ A + ++RP+ T +IS+CS ++ L LG++ H +I + + L N
Sbjct: 240 AIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNA 299
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNV-------------------------IESPDLASW 118
+++MY KCG L ARV+ D M Q+ + I + W
Sbjct: 300 LMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPW 359
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
NAII+G EA++LF EM+ R + PD +T+ + L AC+
Sbjct: 360 NAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACS 402
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY L+ C S LG V H+L + D+ + N + M CG L A V ++
Sbjct: 160 TYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKS 219
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R DL +WN++I G A EA+ ++ EM ++ P+ +T+ ++ +C+
Sbjct: 220 RVR------DLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCS 270
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 73/122 (59%), Gaps = 6/122 (4%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
R+ ST+ +STC+ + +L+LG++VH ++ + + + N +L MY KCG+++DA +
Sbjct: 310 RLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYI 369
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V + + ++ V+ SWN +IAG A EA+ LF M+ ++PD +T+ +L A
Sbjct: 370 VFEGIEEKEVV------SWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSA 423
Query: 160 CT 161
C+
Sbjct: 424 CS 425
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 22/118 (18%)
Query: 30 FDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYG 89
FDFL+ + + C R+L+ R + D + + DVV N +L+ Y
Sbjct: 29 FDFLERHD------------LRGCVRYRNLRAARLLFDQM----PERDVVSWNAMLSGYA 72
Query: 90 KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
+ G +++A+ + DEMP +N I SWN ++A +A LF D ELI
Sbjct: 73 QNGYVKEAKEIFDEMPCKNSI------SWNGMLAAYVQNGRIEDARRLFESKADWELI 124
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++ Y + G + AR D MPQR+ I SW AIIAG A EA+ LF EM
Sbjct: 251 NTMITGYAQNGDIAQARNFFDRMPQRDSI------SWAAIIAGYAQSGYGEEALHLFVEM 304
Query: 142 -RDRELIPDGLTVRSLLCAC 160
RD E + + T S L C
Sbjct: 305 KRDGERL-NRSTFTSTLSTC 323
Score = 43.1 bits (100), Expect = 0.039, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DV +++ Y + G L++AR V D MP++N + SWNAIIAG ++A
Sbjct: 184 DVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSV------SWNAIIAGYVQCKRMDQARE 237
Query: 137 LFSEM 141
LF M
Sbjct: 238 LFEAM 242
Score = 43.1 bits (100), Expect = 0.044, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+ SK+ +++ N ++ Y K L DAR + D MP+R D SWN +I+G A
Sbjct: 114 LFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPER------DEVSWNTMISGYAQN 167
Query: 129 SNANEAMSLFSEMRDREL 146
EA LF E R++
Sbjct: 168 GELLEAQRLFEESPVRDV 185
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++S L R+V D + S V N I+ Y +C ++ AR + + M
Sbjct: 187 TWTAMVSGYVQNGMLDEARRVFDGMPEKNS----VSWNAIIAGYVQCKRMDQARELFEAM 242
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
P +NV +SWN +I G A + +A + F M R+ I
Sbjct: 243 PCQNV------SSWNTMITGYAQNGDIAQARNFFDRMPQRDSI 279
>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
Length = 615
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 79/140 (56%), Gaps = 7/140 (5%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
L +EAL+ F +Q + TY ++ +S+ +L+LG+ +H I+ + +V+
Sbjct: 223 LADEALLFFKLMQQE-GMELDRITYVSVLDAYTSVGALELGKALHVRIVYAGLDTSIVVG 281
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++NMYGKCGS +DAR V D M ++NV+ SWNA++A + EA++LF M
Sbjct: 282 NTLVNMYGKCGSPDDARDVFDSMVEKNVV------SWNAMLAAYGQNGRSREALALFDSM 335
Query: 142 RDRELIPDGLTVRSLLCACT 161
+ P+ +T ++L C+
Sbjct: 336 DLEGVRPNDITFVTILYCCS 355
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 42/114 (36%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
I +C + ++L GR++H S D+V N I+NMYGKCGS+ +A V MP++N
Sbjct: 148 FIDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKN 207
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
VI SW+ +IA A+EA+ F M+ + D +T S+L A TS
Sbjct: 208 VI------SWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTS 255
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
LI C+ ++L+ GR++H + S L N +++MYGKCGSL +A+ V D M +N
Sbjct: 47 LIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKN 106
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
V SW ++AG EA+ LF M +PD + + + +C
Sbjct: 107 VF------SWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSC 152
>gi|357501057|ref|XP_003620817.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495832|gb|AES77035.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 371
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 6/123 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
S + L+ C L+SL+LG++VH+ + SK +V L N ++ +Y KCGS++DAR V D+
Sbjct: 55 SDFLSLLKLCEDLKSLELGKRVHEFLRRSKFGGNVELCNRLIGLYVKCGSVKDARKVFDK 114
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
MP RNV SWN +I G + + +F +MR + ++PD T +L C
Sbjct: 115 MPDRNV------GSWNLMIGGYNVNGLGIDGLLVFKQMRQQGIVPDEETFALVLAVCALV 168
Query: 164 SNV 166
V
Sbjct: 169 DGV 171
>gi|297737392|emb|CBI26593.3| unnamed protein product [Vitis vinifera]
Length = 459
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 29/187 (15%)
Query: 2 IRNLKTQLRFTFYNSQPIQNLYNEALVAFDFLQ---------NNTNFR-----------I 41
I L ++L F +Q +QN F FL+ N NF +
Sbjct: 155 IHGLVSKLGL-FSGNQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNLMFSFCEDL 213
Query: 42 RP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
+P +T ++S CS L SL+ G KVH++I K + ++ + +++MY KCG LE +R
Sbjct: 214 KPNSATLVSVLSACSHLASLEEGEKVHNYINGGKFEFNLSIATALIDMYAKCGQLEKSRE 273
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ + M +R+VI +WN +I+G +A A+ F +M + P+GLT ++L A
Sbjct: 274 IFNSMHERDVI------TWNVMISGYGMHGDARSAIEFFQQMEESSAKPNGLTFLAVLSA 327
Query: 160 CTSPSNV 166
C V
Sbjct: 328 CAHAGLV 334
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 54 SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESP 113
SSL++L + H I++S ++ + + ++++Y + + DE+P R
Sbjct: 46 SSLKTL---LQSHAFIITSGYSNNIFIASKLISLYASFHKPSCSTELFDEIPHR------ 96
Query: 114 DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
D WN+II S + A+ + MR E +P+ T+ ++ +C
Sbjct: 97 DAFLWNSIIKAHFSNGEYSRALDFYQWMRASEALPNHFTIPMIVASCA 144
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/135 (18%), Positives = 59/135 (43%), Gaps = 7/135 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
++ +A A +F Q +P+ T+ ++S C+ ++ G+ + + P++
Sbjct: 294 GMHGDARSAIEFFQQMEESSAKPNGLTFLAVLSACAHAGLVKEGKYLFGKMQDYSVAPNL 353
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
++++ G+ G+L++A + MP SPD W A+++ + + +
Sbjct: 354 KHYACMVDLLGRSGNLQEAEALVLSMPI-----SPDGGVWGALLSSCKIHNEIEMGIRIA 408
Query: 139 SEMRDRELIPDGLTV 153
D ++ DG V
Sbjct: 409 KHAIDSDVENDGYYV 423
>gi|224133278|ref|XP_002321528.1| predicted protein [Populus trichocarpa]
gi|222868524|gb|EEF05655.1| predicted protein [Populus trichocarpa]
Length = 450
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 83/147 (56%), Gaps = 12/147 (8%)
Query: 23 YNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+NEAL F + F I P +T+ ++S CS+L +L GR VH I + +
Sbjct: 170 FNEALEMFSRM---LKFGIEPDEATFVVILSACSALGALDFGRWVHSCISNIGHGCITEV 226
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +L+MY KCG+L++A + + M ++N + +WN +I G+AS ANEA++LFS
Sbjct: 227 NNSLLDMYAKCGALQEAFEIFNGMNKKNTV------TWNTMILGLASHGYANEALALFSN 280
Query: 141 MRDREL-IPDGLTVRSLLCACTSPSNV 166
M +++L PD +T +L AC+ V
Sbjct: 281 MLEQKLWAPDDITFLVVLSACSHGGMV 307
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ L+ C L + LGR +H L V ++N +++MYG +E +R + +E+
Sbjct: 90 TFSFLLKVCGQLGLVLLGRLMHCSTLKRGLNSHVFVRNTLVHMYGTFKDIEASRQLFEEI 149
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P +P+L +WN II S NEA+ +FS M + PD T +L AC++
Sbjct: 150 P------NPELVAWNIIIDCHVSCGKFNEALEMFSRMLKFGIEPDEATFVVILSACSA 201
>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 989
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 86/162 (53%), Gaps = 20/162 (12%)
Query: 14 YNSQPIQNLYNEALVAFDFLQNNTN------FR------IRPS--TYACLISTCSSLRSL 59
+N +++L+ ++ ++ Q N FR ++P+ T A +S CSSL SL
Sbjct: 574 FNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASL 633
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
+ G+++H + S D+ + + +++MY KCG +E+A + + + +R+ I +WN
Sbjct: 634 EGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTI------AWN 687
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
II G A N+A++ F M D + PDG+T +L AC+
Sbjct: 688 TIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACS 729
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 6/116 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y+ ++ C+S RSL + + +H I+ PD L ++N+Y KC AR+V +MP
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R+V+ SW A+I G+ + AN+++ LF EM++ ++P+ T+ + L AC+
Sbjct: 175 DRDVV------SWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACS 224
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ +CS L + GR+VH HI+ ++ + + +++MY KC LEDA V + +
Sbjct: 518 TFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRL 577
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
R DL +W II A + +A++ F +M+ + P+ T+ L C+S
Sbjct: 578 SVR------DLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSS 629
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ C++ ++L+ G+ +H I+ + + + +++MY KCG DA V
Sbjct: 316 TLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVF--- 372
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
I+ PD+ W+A+I + + E++ LF MR + +P+ T+ SLL A T+
Sbjct: 373 ---KTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTG 429
Query: 165 NVLY 168
N+ Y
Sbjct: 430 NLQY 433
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T L+S ++ +LQ G+ +H + + DV + N ++ MY K G + D + + M
Sbjct: 417 TICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM 476
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
R DL SWNA ++G+ + +++F M + IP+ T S+L +C+
Sbjct: 477 VDR------DLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLF 530
Query: 165 NVLY 168
+V Y
Sbjct: 531 DVHY 534
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ N+++ F +QN I P+ T A + CS +L LG+++H D
Sbjct: 191 EGFANDSIYLFQEMQNEG---IMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLD 247
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ + + ++++Y KCG +E A + MP++N + +WN ++ G A + + L
Sbjct: 248 LFVGSALVDLYAKCGEIELASKMFIGMPEQNDV------TWNVLLNGYAQRGDVTGVLKL 301
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNV 166
F M + ++ + T+ ++L C + N+
Sbjct: 302 FCSMMELDVKCNEFTLTTVLKGCANSKNL 330
>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Cucumis sativus]
Length = 878
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 78/142 (54%), Gaps = 18/142 (12%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
NLY+ L A IRP+ Y ++ TC+ + + G+++H H++ + DV
Sbjct: 184 NLYHRMLWA----------EIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDV 233
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N ++ MY KCG + +AR++ D+MP+R+ I SWNA+I+G E + LF
Sbjct: 234 DVGNALITMYVKCGDISNARMLFDKMPKRDRI------SWNAMISGYFENGGGLEGLELF 287
Query: 139 SEMRDRELIPDGLTVRSLLCAC 160
S MR+ + PD +T+ ++ AC
Sbjct: 288 SMMRELSVDPDLITMTTVASAC 309
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 13/150 (8%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
I N EAL+ F Q + + T ++S C+ + +L G+++H H L + D
Sbjct: 478 INNRSFEALLFFR--QMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDG 535
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIES--PDLASWNAIIAGVASPSNANEAMS 136
L N IL+MY +CG ++P N S D+ +WN ++ G A A A+
Sbjct: 536 FLPNAILDMYVRCGR---------KVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVE 586
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
LF +M + E+ PD +T SLLCAC+ V
Sbjct: 587 LFDKMLELEIHPDEITFISLLCACSKSGMV 616
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + S C L + +LGR VH +++ S+ D+ + N ++ MY G LE+A V M
Sbjct: 301 TMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRM 360
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
ES D+ SW A+IA + S +A+ + M ++PD +T+ S+L AC
Sbjct: 361 ------ESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACA 411
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
+ Y L+ C R+ G +V++ + SSKS V L N +L+M+ + G+L DA V
Sbjct: 95 VEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYV 154
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+M +R+V SWN ++ G A +EA++L+ M E+ P+ T S+L C
Sbjct: 155 FGKMSERDVF------SWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTC 208
Query: 161 TSPSNV 166
S++
Sbjct: 209 AGVSDI 214
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S C+ + L LG ++H+ + + V++ N +++MY KC +++A V +
Sbjct: 402 TLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNI 461
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+NV+ SW ++I G+ + + EA+ F +M++ + P+ +T+ S+L AC
Sbjct: 462 SGKNVV------SWTSLILGLRINNRSFEALLFFRQMKE-SMKPNSVTLISVLSACA 511
>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Glycine max]
Length = 634
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 8/142 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L EAL F LQ + TY +++ S L +L G++VH+H+L S+ VVL
Sbjct: 239 GLDEEALELFRRLQRE-GMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVL 297
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
QN +++MY KCG+L AR + D + +R VI SWNA++ G + E + LF+
Sbjct: 298 QNSLIDMYSKCGNLTYARRIFDTLHERTVI------SWNAMLVGYSKHGEGREVLELFNL 351
Query: 141 MRDR-ELIPDGLTVRSLLCACT 161
M D ++ PD +TV ++L C+
Sbjct: 352 MIDENKVKPDSVTVLAVLSGCS 373
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 83/159 (52%), Gaps = 16/159 (10%)
Query: 15 NSQPIQNLY------NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDH 68
NS + N++ EAL+ +TNF+ Y +++ C R+++ G++VH H
Sbjct: 28 NSHHVLNIHIHDTRLREALLHMALRGLDTNFQ----DYNTVLNECLRKRAIREGQRVHAH 83
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
++ + P V L+ ++ Y KC SL DAR V D MP+RNV+ SW A+I+ +
Sbjct: 84 MIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVV------SWTAMISAYSQR 137
Query: 129 SNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
A++A+SLF +M P+ T ++L +C S +
Sbjct: 138 GYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFV 176
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A ++++C LGR++H HI+ + V + + +L+MY K G + +AR + +
Sbjct: 161 TFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCL 220
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P+R+V+ S AII+G A EA+ LF ++ + + +T S+L A +
Sbjct: 221 PERDVV------SCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSG 272
>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
Length = 734
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 8/138 (5%)
Query: 29 AFDFLQ--NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A DFL+ ++ + + P +Y CL C LRSL GR +HD + + P ++N +L
Sbjct: 71 AHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLR 130
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY CGS D + V DEM +N++ SW +I+ A +A+ LFS+M+ +
Sbjct: 131 MYCDCGSXIDVQKVFDEMLMKNLV------SWVIVISAYAKNGELEKAIRLFSDMQASGI 184
Query: 147 IPDGLTVRSLLCACTSPS 164
P+ SLL +C PS
Sbjct: 185 RPNSAVYMSLLQSCLGPS 202
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 41 IRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
IRP + Y L+ +C L+LG+++H H++ ++ ++ ++ I NMY +CG LE A+
Sbjct: 184 IRPNSAVYMSLLQSCLGPSFLELGKQMHSHVIRAQLNANITVETAICNMYVRCGWLEGAK 243
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+V D M +N + +W ++ G A+ LF+ M
Sbjct: 244 LVFDGMDAQNAV------TWTGLMVGYTQAKKLEVALELFARM 280
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y + C++ +L +G + H + + ++ ++ MY KCG L+ AR +
Sbjct: 393 YTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFES-- 450
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I+ PD +W AII+G A NA EA+ F M+ + P+ +T ++L AC+
Sbjct: 451 ----IDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACS 502
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++ ++ C L +G+++H HI+ + +V + +++ Y KCG +E A
Sbjct: 291 VFSIVLKVCCXLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESA------Y 344
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
I P+ SW+A+I+G + + + +F+ +R ++ + S+ AC + +
Sbjct: 345 RSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQA 404
Query: 165 NV 166
N+
Sbjct: 405 NL 406
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 85.5 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 83/145 (57%), Gaps = 12/145 (8%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ L + A+ FD +++ + P YA +++ C+ +L+ G+ VHD+I + + +
Sbjct: 432 EGLSDGAIKLFDEMKSRG---VVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETN 488
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ N + +MY KCGS++DA V M +++VI SWN +I G S NEA++L
Sbjct: 489 SFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVI------SWNTMIGGYTKNSLPNEALTL 542
Query: 138 FSEMRDRELIPDGLTVRSLLCACTS 162
F+EM+ RE PDG TV +L AC S
Sbjct: 543 FAEMQ-RESKPDGTTVACILPACAS 566
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 80/143 (55%), Gaps = 12/143 (8%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+L NEAL F +Q + +P +T AC++ C+SL +L GR++H + L + D
Sbjct: 534 SLPNEALTLFAEMQRES----KPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDK 589
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N +++MY KCG L AR + D +P + DL SW +IAG +EA++ F
Sbjct: 590 YVTNAVVDMYVKCGLLVLARSLFDMIPNK------DLVSWTVMIAGYGMHGYGSEAINTF 643
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
++MR + PD ++ S+L AC+
Sbjct: 644 NQMRMTGIEPDEVSFISILYACS 666
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKCGSLEDARVVSD 102
+T + C+++ +L LG+ +H + + + + +V N +L+MY KCG L A V +
Sbjct: 353 ATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFE 412
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
M ++ V+ SW ++I G ++ A+ LF EM+ R ++PD V S+L AC
Sbjct: 413 RMDEKTVV------SWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAI 466
Query: 163 PSNV 166
N+
Sbjct: 467 NGNL 470
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Query: 36 NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
N+NF + Y ++ C+ +S++ GR+V I SS D +L ++ MY KCG L+
Sbjct: 145 NSNFDL--GAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLK 202
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
+ R+V D++ + + WN +I+ + N E+++LF +M + + P+ T S
Sbjct: 203 EGRMVFDKLSESKIF------LWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSS 256
Query: 156 LL 157
+L
Sbjct: 257 IL 258
>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Glycine max]
Length = 521
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 20/174 (11%)
Query: 2 IRNLKTQLRFTFYNSQPIQNLYNEALVAFDFLQNNTN------FR------IRPS--TYA 47
+RN K + ++ P++N + + F++ + + FR + P T
Sbjct: 172 MRNGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVI 231
Query: 48 CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQR 107
+I+ C++L +L LG VH +++ + +V + N +++MY +CG ++ AR V D MPQR
Sbjct: 232 AVIAACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQR 291
Query: 108 NVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
L SWN+II G A A+EA+S F+ M++ PDG++ L AC+
Sbjct: 292 T------LVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACS 339
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 29/146 (19%)
Query: 45 TYACLISTCS---SLRSLQLGRKVHDHILS-SKSQPDVVLQNYILNMYGKCGSLEDARVV 100
T+ L+S C+ S S+ G +H H+ DV++ +++MY KCG +E AR+
Sbjct: 93 TFITLLSACAHYPSRSSISFGTAIHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLA 152
Query: 101 SDEMPQRNVIE-------------------------SPDLASWNAIIAGVASPSNANEAM 135
D+M RN++ + SW A+I G EA+
Sbjct: 153 FDQMGVRNLVSWNTMIDGYMRNGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEAL 212
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACT 161
F EM+ + PD +TV +++ AC
Sbjct: 213 ECFREMQLSGVAPDYVTVIAVIAACA 238
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 7/144 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ EAL F +Q N + T ++S C+ +L G+ +H I + D+VL+
Sbjct: 295 FQEALALFQKMQLN-KIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLET 353
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCGS++ A V M RNV +WNA+I G+A + +A+SLF +M
Sbjct: 354 ALVDMYAKCGSIDLALQVFRRMRVRNVF------TWNALIGGLAMHGHGEDAISLFDQME 407
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
+L+PD +T +LLCAC+ V
Sbjct: 408 HDKLMPDDVTFIALLCACSHAGLV 431
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 9/136 (6%)
Query: 29 AFDFLQNNT---NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
AFD L T N R T L+ C+ L +L+ G+ +H + ++ + N IL
Sbjct: 196 AFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAIL 255
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+MY KC +E A+ V N I D+ SW ++++G+A EA++LF +M+ +
Sbjct: 256 DMYCKCDDIESAQEVF------NRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNK 309
Query: 146 LIPDGLTVRSLLCACT 161
+ D +T+ +L AC
Sbjct: 310 IELDEITLVGVLSACA 325
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY +++ C+ L +++LGR+ H +L + D+ + N ++ Y CGS A V DE
Sbjct: 113 TYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDES 172
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE-LIPDGLTVRSLLCACTSP 163
R+V+ +WN +I + + +A L EM + L PD +T+ SL+ AC
Sbjct: 173 TVRDVV------TWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQL 226
Query: 164 SNV 166
N+
Sbjct: 227 GNL 229
>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Brachypodium distachyon]
Length = 750
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 11/140 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
EA+ F +Q + I+P T +IS+C++L SL+ G + H L S +P V +
Sbjct: 360 EEAVRVFSEMQRDG---IKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVS 416
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++ +YGKCGS+EDA + DEM D SW A++ G A A E + LF +M
Sbjct: 417 NALVTLYGKCGSIEDAHRLFDEMSFH------DQVSWTALVMGYAQFGKAKETIDLFEKM 470
Query: 142 RDRELIPDGLTVRSLLCACT 161
+ + PDG+T +L AC+
Sbjct: 471 LSKGVKPDGVTFIGVLSACS 490
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 74/141 (52%), Gaps = 7/141 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L +EAL F ++ I T+ +++ C +L +L+ G+++H +I + + +V +
Sbjct: 256 GLESEALDVFRRMRAE-GVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFV 314
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ +++MY KC S+ A V M +N+I SW A+I G EA+ +FSE
Sbjct: 315 GSALVDMYSKCRSVRLAEAVFRRMMWKNII------SWTAMIVGYGQNGCGEEAVRVFSE 368
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M+ + PD T+ S++ +C
Sbjct: 369 MQRDGIKPDDFTLGSVISSCA 389
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 27/149 (18%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RPS T + ++ S+L LGR+VH IL + +++MY K G + DAR
Sbjct: 141 VRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDAR 200
Query: 99 VVSDEMPQRNV-------------------------IESPDLASWNAIIAGVASPSNANE 133
V DEM +NV IE D +W ++ G+ +E
Sbjct: 201 RVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESE 260
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACTS 162
A+ +F MR + D T S+L AC +
Sbjct: 261 ALDVFRRMRAEGVGIDQYTFGSILTACGA 289
>gi|302801912|ref|XP_002982712.1| hypothetical protein SELMODRAFT_116683 [Selaginella moellendorffii]
gi|300149811|gb|EFJ16465.1| hypothetical protein SELMODRAFT_116683 [Selaginella moellendorffii]
Length = 734
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 7/122 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
+A ++ C+ L L+ GR++H +L S+S DVV+QN ++ MY +CGS+ + + D M
Sbjct: 115 FASALAACAGLGDLEQGREIHKRVLESRSIASDVVVQNSLVTMYARCGSVLEGIKIFDAM 174
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P++N++ SWNA+I+ +A+ L+ M+ L P+G SLL AC S
Sbjct: 175 PRKNLV------SWNAMISAFVQCDYPEQALELYHRMKRERLEPNGFVFASLLTACASLG 228
Query: 165 NV 166
N+
Sbjct: 229 NL 230
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 20/163 (12%)
Query: 14 YNSQPIQNL--YNEALVAF----------DFLQNNTNFRIRPS--TYACLISTCSSLRSL 59
+++ P +NL +N + AF + R+ P+ +A L++ C+SL +L
Sbjct: 171 FDAMPRKNLVSWNAMISAFVQCDYPEQALELYHRMKRERLEPNGFVFASLLTACASLGNL 230
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
QLG +H I S Q D+V++N ++NMY KCG +++A V + R+V +W
Sbjct: 231 QLGSSIHQRITSLGLQRDIVMENALINMYSKCGCMDEALEVFSGLATRDVF------TWT 284
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
++IAG A +EA + + MR + P T +LL AC++
Sbjct: 285 SMIAGYAQLGFGSEAFAFYDRMRRDCVSPTSATFVALLSACST 327
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
S YA L+ C S R++ GR++HD + S L+ ++ MY KCG L DA+ DE
Sbjct: 15 SRYARLLQECCSRRNVSEGRRLHDDLRRSGYGDSSYLRRCVVQMYAKCGCLADAKAAFDE 74
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
+ +N D WN +I+G A EA+ LF +M ++ P+G S L AC
Sbjct: 75 IADKN-----DFV-WNLMISGYARSGKNREALELFHKM---DIPPNGFIFASALAACAGL 125
Query: 164 SNV 166
++
Sbjct: 126 GDL 128
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 68/118 (57%), Gaps = 10/118 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T++ ++ CS+L GR+VH IL+++ + L N ++NMY +CGS+ DAR + +
Sbjct: 516 TFSSVLQACSNLED---GREVHARILAAQGGKMSDFLGNGLINMYARCGSMRDARQIFES 572
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
M + + I SW+AI+ A ++ + + M + ++PDG+T+ ++L +C+
Sbjct: 573 MDRSSRI------SWSAIMTLCARHGQHDDIIDTYRLMVNEGVVPDGVTLIAILNSCS 624
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ + CS R +L + + + I S ++ +++ Y KCG +E+AR + D M
Sbjct: 415 TFCSALQACSLKRDSRLSKTIRELIDWSGIDKMDSIRADLVSAYSKCGDMEEARKIFDRM 474
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R+V+ +W +I G A ++ A+ LF M+ + PD +T S+L AC+
Sbjct: 475 ESRDVL------TWTVMIKGYAQQGDSKAALELFHRMKPEGVEPDSVTFSSVLQACS 525
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 77/145 (53%), Gaps = 24/145 (16%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+EA +D ++ + + P+ T+ L+S CS+L + G+ +H+ + + + V++
Sbjct: 297 SEAFAFYDRMRRDC---VSPTSATFVALLSACSTL---EQGKHLHEEVKAFGFESITVVE 350
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
++ MY +CGSLEDA + +M Q+ D SW+A++ A + +A++LF
Sbjct: 351 TALMFMYSRCGSLEDAEFLFAKMQQK------DYVSWSAMVTSHAQFGDPGKALTLF--- 401
Query: 142 RDRELIPDGL-----TVRSLLCACT 161
R++I +G+ T S L AC+
Sbjct: 402 --RQMILEGMQLSLPTFCSALQACS 424
>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g15510, chloroplastic-like [Cucumis sativus]
Length = 878
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 78/142 (54%), Gaps = 18/142 (12%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
NLY+ L A IRP+ Y ++ TC+ + + G+++H H++ + DV
Sbjct: 184 NLYHRMLWA----------EIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDV 233
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N ++ MY KCG + +AR++ D+MP+R+ I SWNA+I+G E + LF
Sbjct: 234 DVGNALITMYVKCGDISNARMLFDKMPKRDRI------SWNAMISGYFENGGGLEGLELF 287
Query: 139 SEMRDRELIPDGLTVRSLLCAC 160
S MR+ + PD +T+ ++ AC
Sbjct: 288 SMMRELSVDPDLITMTTVASAC 309
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 13/150 (8%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
I N EAL+ F Q + + T ++S C+ + +L G+++H H L + D
Sbjct: 478 INNRSFEALLFFR--QMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDG 535
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIES--PDLASWNAIIAGVASPSNANEAMS 136
L N IL+MY +CG ++P N S D+ +WN ++ G A A A+
Sbjct: 536 FLPNAILDMYVRCGR---------KVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVE 586
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
LF +M + E+ PD +T SLLCAC+ V
Sbjct: 587 LFDKMLELEIHPDEITFISLLCACSKSGMV 616
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + S C L + +LGR VH +++ S+ D+ + N ++ MY G LE+A V M
Sbjct: 301 TMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRM 360
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
ES D+ SW A+IA + S +A+ + M ++PD +T+ S+L AC
Sbjct: 361 ------ESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACA 411
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
+ Y L+ C R+ G +V++ + SSKS V L N +L+M+ + G+L DA V
Sbjct: 95 VEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYV 154
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+M +R+V SWN ++ G A +EA++L+ M E+ P+ T S+L C
Sbjct: 155 FGKMSERDVF------SWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTC 208
Query: 161 TSPSNV 166
S++
Sbjct: 209 AGVSDI 214
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S C+ + L LG ++H+ + + V++ N +++MY KC +++A V +
Sbjct: 402 TLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNI 461
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+NV+ SW ++I G+ + + EA+ F +M++ + P+ +T+ S+L AC
Sbjct: 462 SGKNVV------SWTSLILGLRINNRSFEALLFFRQMKE-SMKPNSVTLISVLSACA 511
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 75/137 (54%), Gaps = 7/137 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
EAL F +Q T + + CL S CS L +L +G +H +I K DV L
Sbjct: 373 KEALALFHEMQIRTIEPDKVTMVNCL-SACSQLGALDVGIWIHHYIERHKLSIDVALGTA 431
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+++MY KCG++ A V +E+PQRN + +W A+I G+A NA +A+S FS+M
Sbjct: 432 LVDMYAKCGNIARALQVFEEIPQRNCL------TWTAVICGLALHGNAQDALSYFSKMIH 485
Query: 144 RELIPDGLTVRSLLCAC 160
++PD +T +L AC
Sbjct: 486 IGIVPDEITFLGVLSAC 502
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 27/163 (16%)
Query: 26 ALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
A+ A + ++RP+ T +IS+CS ++ L LG++ H +I + + L N
Sbjct: 240 AIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNA 299
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNV-------------------------IESPDLASW 118
+++MY KCG L ARV+ D M Q+ + I + W
Sbjct: 300 LMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPW 359
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
NAII+G EA++LF EM+ R + PD +T+ + L AC+
Sbjct: 360 NAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACS 402
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY L+ C S LG V H+L + D+ + N + M CG L A V ++
Sbjct: 160 TYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKS 219
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R DL +WN++I G A EA+ ++ EM ++ P+ +T+ ++ +C+
Sbjct: 220 RVR------DLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCS 270
>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 84/150 (56%), Gaps = 13/150 (8%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+ +EA+ F ++ N + P+ T ++S C+S+ +L LG+++ ++ Q D+
Sbjct: 299 GMADEAISLFHSMKENG---VDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDI 355
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ +++MY KCGSLE A+ V ++MP++N ASWNA+I+ +AS A EA+SLF
Sbjct: 356 FVATALIDMYAKCGSLESAQRVFNDMPRKND------ASWNAMISALASHGKAKEALSLF 409
Query: 139 SEMRDR--ELIPDGLTVRSLLCACTSPSNV 166
M D P+ +T SLL AC V
Sbjct: 410 ERMSDEGGSARPNDITFVSLLSACVHAGLV 439
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 6/138 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EA+ F L+ + F + ++ C L L+LGR V ++ + + + + +
Sbjct: 201 EAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSAL 260
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MY KCG L +R + D MP R D +WNA I+ A A+EA+SLF M++
Sbjct: 261 ISMYSKCGELVSSRRIFDGMPSR------DFITWNAAISAYAQNGMADEAISLFHSMKEN 314
Query: 145 ELIPDGLTVRSLLCACTS 162
+ P+ +T+ ++L AC S
Sbjct: 315 GVDPNKVTLTAVLSACAS 332
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ + C++L +++ R H + D N ++ MY +CG AR V DE+
Sbjct: 119 TFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEI 178
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE-LIPDGLTVRSLLCAC 160
++ DL SWN++++G A A EA+ +F +R+ PD +++ S+L AC
Sbjct: 179 TEK------DLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGAC 229
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 85.5 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y EAL F ++ + R ST++C +STC+ + +L+LG++VH ++ + + + N
Sbjct: 372 YEEALNMFVEMKRDGESSNR-STFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGN 430
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+L MY KCGS ++A V + IE D+ SWN +IAG A +A+ LF M+
Sbjct: 431 ALLGMYFKCGSTDEANDVFEG------IEEKDVVSWNTMIAGYARHGFGRQALVLFESMK 484
Query: 143 DRELIPDGLTVRSLLCACT 161
+ PD +T+ +L AC+
Sbjct: 485 KAGVKPDEITMVGVLSACS 503
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++ YG+ G + AR + D MPQR D SW AII+G A + EA+++F EM
Sbjct: 329 NTMITGYGQNGGIAQARKLFDMMPQR------DCVSWAAIISGYAQNGHYEEALNMFVEM 382
Query: 142 -RDRE 145
RD E
Sbjct: 383 KRDGE 387
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 31/146 (21%)
Query: 2 IRNLKTQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQL 61
+RN K L ++ P ++L++ ++ +++N R L
Sbjct: 88 LRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRN---------------------RRLGE 126
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
K+ D + + DVV N +L+ Y + G +++AR V ++MP RN I SWN +
Sbjct: 127 AHKLFDLM----PKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSI------SWNGL 176
Query: 122 IAGVASPSNANEAMSLFSEMRDRELI 147
+A EA LF + ELI
Sbjct: 177 LAAYVHNGRLKEARRLFESQSNWELI 202
Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+ S+S +++ N ++ Y K L DAR + D MP R+VI SWN +I+G A
Sbjct: 192 LFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVI------SWNTMISGYAQV 245
Query: 129 SNANEAMSLFSEMRDREL 146
+ ++A LF+E R++
Sbjct: 246 GDLSQAKRLFNESPIRDV 263
Score = 38.9 bits (89), Expect = 0.72, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 36 NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
N+ R +Y +IS L R + D + + D+ N +L Y + L
Sbjct: 70 NSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKM----PERDLFSWNVMLTGYVRNRRLG 125
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
+A + D MP+++V+ SWNA+++G A +EA +F++M R I
Sbjct: 126 EAHKLFDLMPKKDVV------SWNAMLSGYAQNGFVDEAREVFNKMPHRNSI 171
Score = 36.6 bits (83), Expect = 4.0, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
PD+V N ++ + + G + A V + MP+R+ + S+NA+I+G + + A
Sbjct: 44 PDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSV------SYNAMISGYLRNAKFSLAR 97
Query: 136 SLFSEMRDREL 146
LF +M +R+L
Sbjct: 98 DLFDKMPERDL 108
>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 591
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 80/139 (57%), Gaps = 8/139 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLIS--TCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ LV FD ++N+ + ++P CL++ C++L +L G++VHD I + + L N
Sbjct: 197 DVLVLFDKMKNDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSN 256
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY +CGS++ A V + M +RNV+ SW A+I+G+A EA+ F+EM
Sbjct: 257 TLVSMYSRCGSMDKAYEVFNRMRERNVV------SWTAMISGLAMNGFGKEAIEAFNEML 310
Query: 143 DRELIPDGLTVRSLLCACT 161
+ P+ T+ LL AC+
Sbjct: 311 KFGISPEEQTLTGLLSACS 329
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
E F L+ N +F P + + + C L G ++H I S D +L +
Sbjct: 95 EGFRLFRALRRNISFPANPLSSSFALKCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTL 154
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR-- 142
+++Y C + DA V DE+PQR D SWN +I+ + + LF +M+
Sbjct: 155 MDLYSTCENSTDACKVFDEIPQR------DTVSWNVLISCYLRNKRTRDVLVLFDKMKND 208
Query: 143 -DRELIPDGLTVRSLLCAC 160
DR + PD +T L AC
Sbjct: 209 VDRCVKPDNVTCLLALQAC 227
>gi|297810935|ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319188|gb|EFH49610.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1281
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 4/139 (2%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
YNEAL FD + + + T ++ C+ L L G+ VH +IL V+LQ
Sbjct: 967 YNEALEIFDQMMRMGSSKANEVTMVSVLCACAHLGELNRGKVVHRYILDVHLPLTVILQT 1026
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCGS+ DA V ++ D WNA+I G+AS E++ LF +MR
Sbjct: 1027 SLIDMYAKCGSIGDAWGVFCGAS----VKKTDALMWNAMIGGLASHGFIRESLLLFHKMR 1082
Query: 143 DRELIPDGLTVRSLLCACT 161
+ E+ PD +T LL AC+
Sbjct: 1083 ESEIDPDEITFLCLLAACS 1101
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 26/143 (18%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY L+ + S L + ++G +H ++ + + D+ + N +++MYG AR + DEM
Sbjct: 856 TYPFLLKSSSRLSNREIGGSLHCSVVKTGLEWDLFISNTLIHMYGSFRDKASARKLFDEM 915
Query: 105 PQRNVI-------------------------ESPDLASWNAIIAGVASPSNANEAMSLFS 139
P +N++ D+ +W+++I G NEA+ +F
Sbjct: 916 PYKNLVTWNSILDSYAKSGDVVSARLVFDEMTMRDVVTWSSMIDGYVKSGEYNEALEIFD 975
Query: 140 E-MRDRELIPDGLTVRSLLCACT 161
+ MR + +T+ S+LCAC
Sbjct: 976 QMMRMGSSKANEVTMVSVLCACA 998
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
++PS TY +I + G + + PDV+ Y ++G C S +
Sbjct: 645 LKPSVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVI--TYTSLIHGLCASRRPSE 702
Query: 99 VVS--DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD 149
+S +EM ++ P+ ++ A+I G+ + ++EA+ F EM ++E+ PD
Sbjct: 703 AISRWNEMKGKDCY--PNRITFMALIQGLCNCGWSSEALVYFREMEEKEMEPD 753
>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
Length = 871
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 82/146 (56%), Gaps = 10/146 (6%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV-L 80
NEAL F + NF + P+ + +C + C+ L +L+ GR++H ++L ++ + ++ +
Sbjct: 478 NEALELFSQMLQPDNF-VMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFV 536
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MY K G ++ ARVV D M QRN + SW +++ G EA+ +F E
Sbjct: 537 ANCLIDMYSKSGDVDAARVVFDNMHQRNGV------SWTSLMTGYGMHGRGEEALQIFYE 590
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M+ L+PDG+T +L AC+ V
Sbjct: 591 MQKVXLVPDGVTFVVVLYACSHSGMV 616
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 10/168 (5%)
Query: 1 MIRNLKTQLRFTFYNSQPIQNLYNEALVAFDFLQ-----NNTNFRIRPSTYACLISTCSS 55
++R L F+ +Q I+ + + D LQ +R T+ ++ C
Sbjct: 99 VLRRLHPSSHTVFWWNQLIRRSVHLGFLE-DVLQLYRRMQRLGWRPDHYTFPFVLKACGE 157
Query: 56 LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDL 115
+ S + G VH + +S + +V + N +++MYG+CG+ E+AR V DEM +R V DL
Sbjct: 158 IPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGV---GDL 214
Query: 116 ASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSLLCACTS 162
SWN+I+A ++ AM +F M D + PD +++ ++L AC S
Sbjct: 215 VSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACAS 262
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 8/117 (6%)
Query: 32 FLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYG 89
F + + IRP + + + C+S+ + G++VH + L S DV + N +++MY
Sbjct: 237 FERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYA 296
Query: 90 KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
KCG +E+A V + M ++V+ SWNA++ G + ++A+ LF ++R+ ++
Sbjct: 297 KCGMMEEANKVFERMKVKDVV------SWNAMVTGYSQIGRFDDALGLFEKIREEKI 347
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 13/126 (10%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILS-----SKSQP--DVVLQNYILNMYGKCGSLEDA 97
T L+S C+S +L G++ H H + ++ P D+++ N +++MY KC S + A
Sbjct: 388 TLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAA 447
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR--DRELIPDGLTVRS 155
R + D +P ++ + +W +I G A ANEA+ LFS+M D ++P+ T+
Sbjct: 448 RAMFDLIPPKD----RSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISC 503
Query: 156 LLCACT 161
L AC
Sbjct: 504 ALMACA 509
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 85.5 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 40/116 (34%), Positives = 67/116 (57%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY LI +++ ++LG +H ++ S + +QN +L++Y CG + A V D+M
Sbjct: 123 TYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKM 182
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P++ DL +WN++I G A EA++L++EM + + PDG T+ SLL AC
Sbjct: 183 PEK------DLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSAC 232
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 69/124 (55%), Gaps = 9/124 (7%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I+P T L+S C+ + +L LG++VH +++ ++ N +L++Y +CG +E+A+
Sbjct: 218 IKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAK 277
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE-LIPDGLTVRSLL 157
+ DEM +N + SW ++I G+A EA+ LF M E L+P +T +L
Sbjct: 278 TLFDEMVDKNSV------SWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGIL 331
Query: 158 CACT 161
AC+
Sbjct: 332 YACS 335
>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 85.5 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 49/146 (33%), Positives = 83/146 (56%), Gaps = 12/146 (8%)
Query: 19 IQNLYNE-ALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQ 75
+QN NE AL + +Q +I P+ T A ++ CS+L +L+ G+++H +
Sbjct: 391 VQNGKNEEALSMYGRMQMR---KILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLG 447
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
P++ +++ + MY KCGSLE+ ++ M QR D+ SWNA+I+G++ + EA+
Sbjct: 448 PELSIRSALSTMYAKCGSLEEGVLIFRRMLQR------DIVSWNAMISGLSQNGHGREAL 501
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACT 161
LF EMR PD +T ++L AC+
Sbjct: 502 ELFEEMRLEGTKPDHITFVTVLSACS 527
Score = 69.3 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ CS + +++ G++ H ++L S + + +++MY K G DAR D +
Sbjct: 316 TLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFL 375
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ PDL W +IIAG EA+S++ M+ R+++P+ LT+ S+L AC++
Sbjct: 376 LE------PDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSN 427
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
R+VH + + S DV + + ++N Y K G + +AR + D MP+RN L SW +
Sbjct: 131 ARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERN------LVSWTTM 184
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
I+G AS A EA+ +F MR E + S+L A P V
Sbjct: 185 ISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFV 229
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/145 (24%), Positives = 72/145 (49%), Gaps = 13/145 (8%)
Query: 20 QNLYNEALVAFDFL---QNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
+ + EAL F + + N N + S + L+ C + G++VH ++ +
Sbjct: 191 KQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALV--CPEF--VDSGKQVHCVVVKNGVLE 246
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
V + N ++ MY KCG+L + ++ + +N I +W+A+I G + ++++A+
Sbjct: 247 FVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAI------TWSALITGYSQAGDSHKALK 300
Query: 137 LFSEMRDRELIPDGLTVRSLLCACT 161
LFS+M +P T+ +L AC+
Sbjct: 301 LFSKMHYAGFVPSEFTLVGVLKACS 325
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 57 RSLQLGRKVHDHILSSKSQPDV-VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDL 115
+SL+ G+ +H HI+ L N ++ Y KCG L A++V + + +NV+
Sbjct: 21 KSLKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKLVFENLKHKNVV----- 75
Query: 116 ASWNAIIAGVA--SPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
S+N +I G++ +N + LF M ++PD T + A
Sbjct: 76 -SYNCLIHGLSHNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTA 120
>gi|357150199|ref|XP_003575376.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Brachypodium distachyon]
Length = 523
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 36 NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
+ F++ +T +C++S C L L++G+ VH + S + N +++MYGKCG+L+
Sbjct: 237 DEGFQLNGTTVSCVLSACGHLGMLKIGKVVHGYAWRSCVGFGSSVVNGLIDMYGKCGNLK 296
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
+AR + DE R+ L +WN++I +A ++ A+++F EMRD + PD +T
Sbjct: 297 EARWMFDEFSDRS------LTTWNSLINCLALHGHSKSAIAVFDEMRDEGIEPDVVTFVG 350
Query: 156 LLCACTSPSNV 166
LL ACT V
Sbjct: 351 LLNACTHGGFV 361
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
+QL R +H H S V++ +L+ Y + G + DAR + D + +RNVI S
Sbjct: 127 GVQLVRSIHSHACKSGFHAYDVIRTSLLDGYSRYGMMLDARKLFDGLTERNVI------S 180
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDREL 146
W A+++G A +A+ LF M +R++
Sbjct: 181 WTALVSGYARAGKIGDAIVLFDRMPERDV 209
>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 85.5 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 53/144 (36%), Positives = 79/144 (54%), Gaps = 14/144 (9%)
Query: 22 LYNEALVAFDFLQN---NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
L EAL F LQ ++N+ TYA L++ S L +L G++VH H+L + V
Sbjct: 192 LDEEALELFCRLQREGMSSNY----VTYASLLTALSGLAALDHGKQVHSHVLRCELPFYV 247
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
VLQN +++MY KCG+L AR + + MP R VI SWNA++ G + E + LF
Sbjct: 248 VLQNSLIDMYSKCGNLNYARKIFNNMPVRTVI------SWNAMLVGYSKHGKGIEVVKLF 301
Query: 139 SEMRDRELI-PDGLTVRSLLCACT 161
MR+ + PD +T ++L C+
Sbjct: 302 KLMREENKVKPDSVTFLAVLSGCS 325
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 41/121 (33%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
I+ Y L++ C + R+++ G++VH H++ + P V L ++ +Y KC L AR V
Sbjct: 8 IKFDGYNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHV 67
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
DEM +RNV+ SW A+I+G + A+EA+ LF +M + P+ T ++L +C
Sbjct: 68 FDEMRERNVV------SWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSC 121
Query: 161 T 161
T
Sbjct: 122 T 122
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A ++S+C+ +LGR++H HI + + + + +L+MY K G + +AR V + +
Sbjct: 113 TFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECL 172
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P+R+V+ S AII+G A EA+ LF ++ + + +T SLL A +
Sbjct: 173 PERDVV------SCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALS 223
>gi|91805879|gb|ABE65668.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 520
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 6/125 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
F ST+A +I C+ L S ++G++VH I+ S + + + +L+MY KCG + D
Sbjct: 267 AGFHPNISTFASVIGACAVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGIND 326
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
AR V D+M ++NV SW ++I G N EA+ LF+ M++ + P+ +T
Sbjct: 327 ARRVFDQMQEKNVF------SWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGA 380
Query: 157 LCACT 161
L AC+
Sbjct: 381 LSACS 385
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
+ G+K+H I+ + QPD+ + +L ++ KCG L AR V DE+P+ P L+++N
Sbjct: 51 KAGKKIHADIIKTGFQPDLNISIKLLILHLKCGCLSYARQVFDELPK------PTLSAYN 104
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYL 169
+I+G E + L M DG T+ +L A S + + L
Sbjct: 105 YMISGYLKHGLVKELLLLVQRMSYSGEKADGYTLSMVLKASNSRGSTMIL 154
>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 595
Score = 85.5 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 49/145 (33%), Positives = 76/145 (52%), Gaps = 6/145 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y E L+ F + +T +++ C++L L +G VH I S+ +PDV+L
Sbjct: 284 YGECLMLFGKMVEGREAVPNEATLVSVLTACANLGKLSMGMWVHSFIRSNNIKPDVLLLT 343
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+L MY KCG+++ A+ V DEMP R+V+ SWN++I G ++A+ LF EM
Sbjct: 344 CLLTMYAKCGAMDLAKGVFDEMPVRSVV------SWNSMIMGYGLHGIGDKALELFLEME 397
Query: 143 DRELIPDGLTVRSLLCACTSPSNVL 167
P+ T S+L ACT V+
Sbjct: 398 KAGQQPNDATFISVLSACTHAGMVM 422
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 41/153 (26%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE- 103
T+ LI C+ + S + G K H I+ D+ +N ++ MY G + +AR+V DE
Sbjct: 109 TFPLLIKVCTDIGSFREGLKGHARIVKFGFGSDLFARNSLIRMYSVFGRIGNARMVFDES 168
Query: 104 ------------------------------MPQRNVIESPDLASWNAIIAGVASPSNANE 133
MP R+V+ SWN +IAG + +
Sbjct: 169 CWLDLVSYNSMIDGYVKNGEIGAARKVFNEMPDRDVL------SWNCLIAGYVGVGDLDA 222
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
A LF + +R D ++ ++ C NV
Sbjct: 223 ANELFETIPER----DAVSWNCMIDGCARVGNV 251
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 12/153 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILS------SK 73
QN NE V L + T+ L++ C++L L+LGR+ H HIL S
Sbjct: 362 QNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSG 421
Query: 74 SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
D+ + N +++MY KCG +ED R+V + M +R D SWNA+I G A E
Sbjct: 422 EDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLER------DNVSWNAMIVGYAQNGYGTE 475
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
A+ +F EM PD +T+ +L AC+ V
Sbjct: 476 ALEIFREMLVSGERPDHVTMIGVLSACSHAGLV 508
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
S +A L+ TC +S+ R VH I+ ++ ++ +QN ++++YGKCG LEDAR V D
Sbjct: 20 SPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDH 79
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
M QRN SWNA++ + +EA++LF M +R+
Sbjct: 80 MQQRNTF------SWNAVLGALTKFGALDEALNLFKCMPERD 115
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 28/166 (16%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILS-SKSQPDVVLQNYIL 85
A + N I P T A + S C+SL +++ G ++H ++ K + D+VL N ++
Sbjct: 236 ALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALV 295
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESP-------------------------DLASWNA 120
+MY KC + +AR+V D MP R+V+ ++ SWNA
Sbjct: 296 DMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNA 355
Query: 121 IIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+IAG EA+ LF ++ + P T +LL AC + +++
Sbjct: 356 LIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADL 401
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 74/144 (51%), Gaps = 7/144 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ EAL F ++ +F + ++ +S C+ L L +G ++H I S+ DV + +
Sbjct: 132 FEEAL-RFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGS 190
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KC + A+ D+M RN++ SWN++I A +A+ +F M
Sbjct: 191 ALVDMYSKCRVVASAQRAFDDMDVRNIV------SWNSLITCYEQNGPAGKALEVFVRMM 244
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
+ + PD +T+ S+ AC S S +
Sbjct: 245 NCGIEPDEITLASVASACASLSAI 268
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 75/140 (53%), Gaps = 7/140 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
NL EAL F +Q +N + T +S CS L +L G H++I DV L
Sbjct: 366 NLSFEALELFREMQW-SNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKHNLSLDVAL 424
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+++MY KCG++ A V +EMP+RN + +W AII G+A N N+A+ FS+
Sbjct: 425 GTALIDMYAKCGNMTKALQVFNEMPRRNSL------TWTAIIGGLALYGNVNDAIFYFSK 478
Query: 141 MRDRELIPDGLTVRSLLCAC 160
M D L+PD +T +L AC
Sbjct: 479 MIDSGLMPDEITFLGVLTAC 498
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 27/160 (16%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A Q ++P T ++S C+ L SL+LGR++H +I S + L N +++
Sbjct: 239 AMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMD 298
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIE-------------------------SPDLASWNAI 121
MY KCG LE +V+ D M ++ V+ ++ +WNA+
Sbjct: 299 MYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAM 358
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I + + EA+ LF EM+ + PD +T+ L AC+
Sbjct: 359 IGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACS 398
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 6/137 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
+ LV + + R TY+ L C++L +G ++ +L D+ L N I
Sbjct: 136 KGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGI 195
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++M G A V DE R DL SWN++I G EAM ++ +M
Sbjct: 196 IHMLVSVGESGLAHKVFDEGCVR------DLVSWNSLINGYVRRRQPREAMGIYQQMITE 249
Query: 145 ELIPDGLTVRSLLCACT 161
+ PD +T+ ++ AC
Sbjct: 250 HVKPDEVTMIGVVSACA 266
>gi|347954488|gb|AEP33744.1| chloroplast biogenesis 19, partial [Aethionema grandiflorum]
Length = 413
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 83/144 (57%), Gaps = 11/144 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ + EALV F +Q + ++P A + ++ C++L +L G VH ++LS + +
Sbjct: 130 KGFHEEALVWFREMQISG---VKPDYVAIIAALAACTNLGALSFGLWVHRYVLSQDFKNN 186
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + N ++++Y +CG +E AR V D+M +R V+ SWN++I G A+ NA+E++
Sbjct: 187 VRVNNSLIDLYCRCGCVEFAREVFDKMEKRTVV------SWNSVIVGSAANGNAHESLVY 240
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F +M++ PD +T L AC+
Sbjct: 241 FRKMQEEGFNPDAVTFTGALTACS 264
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
V N +++ Y + G ++ A + DEMP PDL SW A+I G EA+ F
Sbjct: 87 VTWNTMIDAYMRSGKVDRAVKLFDEMPD------PDLISWTAMINGFVKKGFHEEALVWF 140
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
EM+ + PD + + + L ACT
Sbjct: 141 REMQISGVKPDYVAIIAALAACT 163
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 9/106 (8%)
Query: 45 TYACLISTCSSL--RSLQLGRKVHDHILS-SKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
T+ LIS C S LG +H + + V++ IL MY K AR V
Sbjct: 19 TFIALISGCGDFPTGSETLGDLLHGYACKLGLDRTHVMVGTAILGMYSKRCRFGKARCVF 78
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
D M +N + +WN +I + A+ LF EM D +LI
Sbjct: 79 DYMEDKNSV------TWNTMIDAYMRSGKVDRAVKLFDEMPDPDLI 118
>gi|255540955|ref|XP_002511542.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550657|gb|EEF52144.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 434
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 81/145 (55%), Gaps = 11/145 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
NE L F+ +Q I P+ T L+S C+ L L++G ++ +I + ++++
Sbjct: 210 NEGLKTFERMQAED---ISPNEITLVTLLSICAKLGDLEMGLRIKKYIEDNNLCVNMIVS 266
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
IL MY KCG+++DAR D M QR D+ +W+A+IAG A +NEA+ LF M
Sbjct: 267 TAILEMYVKCGAVDDARKEFDRMGQR------DIVAWSAMIAGYAQNGRSNEALELFECM 320
Query: 142 RDRELIPDGLTVRSLLCACTSPSNV 166
R ++ P+ +T+ S+L AC +V
Sbjct: 321 RREKVKPNDVTLVSVLSACVQLGSV 345
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 70/124 (56%), Gaps = 11/124 (8%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
NEAL F+ ++ +++P+ T ++S C L S+++G + ++ S +V +
Sbjct: 311 NEALELFECMRRE---KVKPNDVTLVSVLSACVQLGSVEMGNYIGSYVESQDLASNVYVA 367
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+ ++ MY KCG++ AR V + PQ+ D+ +WN++I G+A A +A++L+ M
Sbjct: 368 SALVGMYSKCGNISKAREVFGKTPQK------DIVTWNSMIVGLAVNGFAKDAIALYRNM 421
Query: 142 RDRE 145
++ +
Sbjct: 422 KEAD 425
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 26/166 (15%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+L+ +AL F F ++++ R+ T +I CSSL ++ +G++VH I+ +V +
Sbjct: 75 SLHKDALKTF-FSMHHSDTRLSCFTGPPVIKACSSLLAIDVGKQVHSLIVICGIDCNVYV 133
Query: 81 QNYILNMYGKCGSLEDARVV----------------------SDEMPQRNVIES---PDL 115
Q +++ Y K G L AR + D + R + +S +
Sbjct: 134 QTSLMDFYAKIGELGSARKIFDGILVKDPISYNCLITGYSKAGDVIAARRLFDSMTERTV 193
Query: 116 ASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
SWNA+I+ A + NE + F M+ ++ P+ +T+ +LL C
Sbjct: 194 VSWNAMISCYAHNGDLNEGLKTFERMQAEDISPNEITLVTLLSICA 239
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 85.5 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 50/144 (34%), Positives = 77/144 (53%), Gaps = 20/144 (13%)
Query: 21 NLYN---EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
NLYN EA + FD T ++S C+ L LG++VH I ++ +
Sbjct: 297 NLYNQMEEAGLKFD-----------DGTVISILSACAVSGLLGLGKRVHASIERTRFKCS 345
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ N +++MY KCGSLE+A + M +++V+ SWNAII G+A + +A+ L
Sbjct: 346 TPVSNALIDMYAKCGSLENALSIFHGMVRKDVV------SWNAIIQGLAMHGHGEKALQL 399
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
FS M+ +PD +T +LCACT
Sbjct: 400 FSRMKGEGFVPDKVTFVGVLCACT 423
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 88 YGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
Y K G ++ AR++ D+MP +N L W +I+G A A +A++L+++M + L
Sbjct: 255 YSKAGDMDMARILFDKMPVKN------LVPWTIMISGYAEKGLAKDAINLYNQMEEAGLK 308
Query: 148 PDGLTVRSLLCAC 160
D TV S+L AC
Sbjct: 309 FDDGTVISILSAC 321
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 10/128 (7%)
Query: 24 NEALVAFD--FLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+E L+AF F ++ TY L+ CS +++ +H + D+ +
Sbjct: 94 SEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVP 153
Query: 82 NYILNMYGKCG--SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
N +++ Y KCG + AR V + M +R D SWN++I G+ EA LF
Sbjct: 154 NSLIDSYFKCGLDGVAAARKVFEVMAER------DTVSWNSMIGGLVKVGELGEARRLFD 207
Query: 140 EMRDRELI 147
EM +R+ +
Sbjct: 208 EMPERDTV 215
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 53 CSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIES 112
CSSL + +++H +L + + + ++ + C + A V N I+
Sbjct: 27 CSSLNQV---KQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVF------NQIQD 77
Query: 113 PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
PD+ +N +I S A S+F EM+D + D T LL AC+
Sbjct: 78 PDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACS 126
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 6/146 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N EAL F + +N R T +IS C+ L L+ GR VHD+I ++ V L
Sbjct: 260 NRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSL 319
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++M+ KCG ++ A+ + D M + DL SWN+++ G+A EA++ F
Sbjct: 320 NNSLIDMFSKCGDIDAAKRIFDSMSYK------DLISWNSMVNGLALHGLGREALAQFHL 373
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M+ +L PD +T +L AC+ V
Sbjct: 374 MQTTDLQPDEITFIGVLTACSHAGLV 399
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 79/144 (54%), Gaps = 8/144 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
NEAL+ + ++ + F T A L+S C+ L+ L +G K+H HI + VL +
Sbjct: 162 NEALLLYKKMEED-GFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSA 220
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++NMY KCG L+ AR V D++ + D+ +W+A+I G + + EA+ LF E+
Sbjct: 221 LVNMYAKCGDLKTARQVFDQLSDK------DVYAWSALIFGYVKNNRSTEALQLFREVAG 274
Query: 144 RE-LIPDGLTVRSLLCACTSPSNV 166
+ P+ +T+ +++ AC ++
Sbjct: 275 GSNMRPNEVTILAVISACAQLGDL 298
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ C+ L ++G+ +H ++ D+ ++ +LNMY CG L+ AR + + M
Sbjct: 81 TFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERM 140
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
RN + W ++I+G NEA+ L+ +M + PD +T+ +L+ AC
Sbjct: 141 GHRNKV------VWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACA 191
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 83/148 (56%), Gaps = 12/148 (8%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVH-DHILSSK 73
NSQP+ EAL F + + T C++S L L++G+++H +H+
Sbjct: 363 NSQPM-----EALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNKIG 417
Query: 74 SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
Q ++L+N +++MY KCGS++ A + MP++N++ SWN++I+ AS +A +
Sbjct: 418 IQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLV------SWNSMISAYASYGHAKK 471
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACT 161
A++LF +M L PD +T +L AC+
Sbjct: 472 ALTLFDQMIGSGLKPDHITFIGVLSACS 499
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 11/138 (7%)
Query: 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHI 69
T N N +EA+ F+ + ++ ++P+ T L+S CS ++G+ +H+HI
Sbjct: 223 TMINGYARNNWLDEAIALFNSMLSSD---VKPNEVTMIALLSACSQKGDSEMGKTLHEHI 279
Query: 70 LSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPS 129
+ L N +L+MY KCG L AR + + M +R+V SW +++ G A
Sbjct: 280 RRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVF------SWTSLLNGYAKNG 333
Query: 130 NANEAMSLFSEMRDRELI 147
+ A LF EM +R ++
Sbjct: 334 DLGSARKLFDEMPERNIV 351
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 8/144 (5%)
Query: 24 NEALVAFDFLQNNTNFRIR--PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
N + F F + R ++ + C +G VH I D+ +Q
Sbjct: 131 NHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAEKIVGMAVHSVIWKRGFDSDLFVQ 190
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++ Y + G L AR + DE ++V+ +W +I G A + +EA++LF+ M
Sbjct: 191 NGLIQNYVETGCLGFARQMFDESSVKDVV------TWTTMINGYARNNWLDEAIALFNSM 244
Query: 142 RDRELIPDGLTVRSLLCACTSPSN 165
++ P+ +T+ +LL AC+ +
Sbjct: 245 LSSDVKPNEVTMIALLSACSQKGD 268
>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 944
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 78/142 (54%), Gaps = 7/142 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
+ L+ L F ++ N R ST+A ++ + SL LG+++H I+ S + +V
Sbjct: 424 KGLHGAGLKLFTKMRG-ANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVF 482
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ +++MY KCGS++DA V +EMP RN + SWNA+I+ A + A+ F+
Sbjct: 483 SGSGLVDMYAKCGSIKDAVQVFEEMPDRNAV------SWNALISAYADNGDGEAAIGAFT 536
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
+M L PD +++ +L AC+
Sbjct: 537 KMIQSGLQPDSVSILGVLIACS 558
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 15/166 (9%)
Query: 8 QLRFTFYN------SQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQL 61
+L F YN SQ Q Y E+L F +Q F R +A ++S ++L SLQ+
Sbjct: 307 ELDFVSYNVVISSYSQAEQ--YEESLNLFREMQC-MGFDRRNFPFATMLSIAANLSSLQV 363
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
GR+VH + + + + + N +++MY KC ++A ++ + QR+ + SW A+
Sbjct: 364 GRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTV------SWTAL 417
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
I+G + LF++MR L D T ++L A +++L
Sbjct: 418 ISGYVQKGLHGAGLKLFTKMRGANLRADQSTFATVLKASAGFASLL 463
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 15/134 (11%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
LY EA+ F ++ + + +PS T++ ++ L LG+++H +++ D
Sbjct: 223 GLYTEAIHLFLKMRQSGH---KPSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDA 279
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N IL+ Y K + + R + +EMP+ D S+N +I+ + E+++LF
Sbjct: 280 SVGNQILHFYSKHDRVLETRNLFNEMPEL------DFVSYNVVISSYSQAEQYEESLNLF 333
Query: 139 SEMR----DRELIP 148
EM+ DR P
Sbjct: 334 REMQCMGFDRRNFP 347
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 64 KVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIA 123
KV+D + + V N +++ Y K G L AR + D MP R V+ +W ++
Sbjct: 65 KVYDEM----PHKNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVV------TWTILMG 114
Query: 124 GVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
A ++ +EA LF +M +PD +T +LL C
Sbjct: 115 WYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLLPGC 151
>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
Length = 762
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 71/138 (51%), Gaps = 8/138 (5%)
Query: 29 AFDFLQ--NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A DFL+ ++ + + P +Y CL C LRSL GR +HD + + P ++N +L
Sbjct: 71 AHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLR 130
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY CGS D + V DEM +N L SW +I+ A +A+ LFS+M+ +
Sbjct: 131 MYCDCGSCIDVQKVFDEMLMKN------LVSWVIVISAYAKNGELEKAIRLFSDMQASGI 184
Query: 147 IPDGLTVRSLLCACTSPS 164
P+ SLL +C PS
Sbjct: 185 RPNSAVYMSLLQSCLGPS 202
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 41 IRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
IRP + Y L+ +C L+LG+++H H++ ++ ++ ++ I NMY +CG LE A+
Sbjct: 184 IRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAK 243
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+V D M +N + +W ++ G A+ LF+ M
Sbjct: 244 LVFDGMDAQNAV------TWTGLMVGYTQAKKLEVALELFARM 280
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y + C++ +L +G + H + + ++ ++ MY KCG L+ AR +
Sbjct: 393 YTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFES-- 450
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I+ PD +W AII+G A NA EA+ F M+ + P+ +T ++L AC+
Sbjct: 451 ----IDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACS 502
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++ ++ C L +GR++H HI+ ++ +V + +++ Y KCG +E A
Sbjct: 291 VFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESA------Y 344
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
I P+ SW+A+I+G + + + +F+ +R ++ + S+ AC + +
Sbjct: 345 RSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQA 404
Query: 165 NV 166
N+
Sbjct: 405 NL 406
>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Vitis vinifera]
Length = 852
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 82/146 (56%), Gaps = 10/146 (6%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV-L 80
NEAL F + NF + P+ + +C + C+ L +L+ GR++H ++L ++ + ++ +
Sbjct: 459 NEALELFSQMLQPDNF-VMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFV 517
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MY K G ++ ARVV D M QRN + SW +++ G EA+ +F E
Sbjct: 518 ANCLIDMYSKSGDVDAARVVFDNMHQRNGV------SWTSLMTGYGMHGRGEEALQIFYE 571
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M+ L+PDG+T +L AC+ V
Sbjct: 572 MQKVGLVPDGVTFVVVLYACSHSGMV 597
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 10/168 (5%)
Query: 1 MIRNLKTQLRFTFYNSQPIQNLYNEALVAFDFLQ-----NNTNFRIRPSTYACLISTCSS 55
++R L F+ +Q I+ + + D LQ +R T+ ++ C
Sbjct: 80 VLRRLHPSSHTVFWWNQLIRRSVHLGFLE-DVLQLYRRMQRLGWRPDHYTFPFVLKACGE 138
Query: 56 LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDL 115
+ S + G VH + +S + +V + N +++MYG+CG+ E+AR V DEM +R V DL
Sbjct: 139 IPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGV---GDL 195
Query: 116 ASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSLLCACTS 162
SWN+I+A ++ AM +F M D + PD +++ ++L AC S
Sbjct: 196 VSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACAS 243
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 8/117 (6%)
Query: 32 FLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYG 89
F + + IRP + + + C+S+ + G++VH + L S DV + N +++MY
Sbjct: 218 FERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYA 277
Query: 90 KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
KCG +E+A V + M ++V+ SWNA++ G + ++A+ LF ++R+ ++
Sbjct: 278 KCGMMEEANKVFERMKVKDVV------SWNAMVTGYSQIGRFDDALGLFEKIREEKI 328
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 13/126 (10%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILS-----SKSQP--DVVLQNYILNMYGKCGSLEDA 97
T L+S C+ +L G++ H H + ++ P D+++ N +++MY KC S + A
Sbjct: 369 TLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAA 428
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR--DRELIPDGLTVRS 155
R + D +P ++ + +W +I G A ANEA+ LFS+M D ++P+ T+
Sbjct: 429 RAMFDLIPPKD----RSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISC 484
Query: 156 LLCACT 161
L AC
Sbjct: 485 ALMACA 490
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 85.1 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 77/144 (53%), Gaps = 7/144 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+NEA+ + + ++++ +I TY+ L+ C ++L G ++++HI S QPD+ + N
Sbjct: 91 FNEAMQVLERV-DSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWN 149
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++NMY KCG+ A+ + D+M ++ D+ SWN ++ G EA L +M
Sbjct: 150 TLINMYAKCGNTISAKQIFDDMREK------DVYSWNLLLGGYVQHGLYEEAFKLHEQMV 203
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
+ PD T S+L AC NV
Sbjct: 204 QDSVKPDKRTFVSMLNACADARNV 227
Score = 85.1 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 74/135 (54%), Gaps = 8/135 (5%)
Query: 28 VAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
VAFD+ + I+P T+ L++ C+S +L GR++H I + DV++ ++
Sbjct: 598 VAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLI 657
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+MY KCGS+EDA V ++P++NV SW ++I G A EA+ LF +M+
Sbjct: 658 SMYTKCGSIEDAHQVFHKLPKKNVY------SWTSMITGYAQHGRGKEALELFYQMQQEG 711
Query: 146 LIPDGLTVRSLLCAC 160
+ PD +T L AC
Sbjct: 712 VKPDWITFVGALSAC 726
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 11/143 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y+ AL F L I+P ST+ +++ C S SL+LG+ VH I+ + + D+ +
Sbjct: 495 YDNALATFQALLKEG---IKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHV 551
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++M+ CG L A+ + ++MP+R DL SWN IIAG A F
Sbjct: 552 SNALVSMFVNCGDLMSAKNLFNDMPKR------DLVSWNTIIAGFVQHGKNQVAFDYFKM 605
Query: 141 MRDRELIPDGLTVRSLLCACTSP 163
M++ + PD +T LL AC SP
Sbjct: 606 MQESGIKPDKITFTGLLNACASP 628
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+ L+ C+ +L+ G+KVH + ++ + IL+MY KCGS+EDA V D +
Sbjct: 315 FVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVK 374
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
RNV+ SW A+IAG A +EA F++M + + P+ +T S+L AC+SPS
Sbjct: 375 GRNVV------SWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPS 427
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 11/146 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
LY EA F + ++P T+ +++ C+ R++ GR++++ IL + D
Sbjct: 189 HGLYEEA---FKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTD 245
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ + ++NM+ KCG + DA V D +P R DL +W ++I G+A +A +L
Sbjct: 246 LFVGTALINMHIKCGDIGDATKVFDNLPTR------DLVTWTSMITGLARHGRFKQACNL 299
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSP 163
F M + + PD + SLL AC P
Sbjct: 300 FQRMEEEGVQPDKVAFVSLLRACNHP 325
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 8/140 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AF F I P+ T+ ++ CSS +L+ G+++ DHI+ + D ++ +L+
Sbjct: 397 AFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLS 456
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCGSL+DA V +++ ++NV+ +WNA+I + A++ F + +
Sbjct: 457 MYAKCGSLKDAHRVFEKISKQNVV------AWNAMITAYVQHEQYDNALATFQALLKEGI 510
Query: 147 IPDGLTVRSLLCACTSPSNV 166
P+ T S+L C S ++
Sbjct: 511 KPNSSTFTSILNVCKSSDSL 530
>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 85.1 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 7/140 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N +EA FD ++ N + A ++S C+ L +L+ G+ +H +I S + D L
Sbjct: 176 NRLHEAFALFDRMRLE-NVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKL 234
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+++MY KCG LE A V +E+PQ+ + +SWN +I G+A A+ LF E
Sbjct: 235 ATTVIDMYCKCGCLEKASEVFNELPQKGI------SSWNCMIGGLAMHGKGEAAIELFKE 288
Query: 141 MRDRELIPDGLTVRSLLCAC 160
M + PDG+T ++L AC
Sbjct: 289 MEREMVAPDGITFVNVLSAC 308
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/117 (35%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY LI C +++ G+++H H+L D N +++MY SLE AR V D M
Sbjct: 96 TYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNM 155
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
PQR+ + SWNA+IA + +EA +LF MR ++ D S+L ACT
Sbjct: 156 PQRD----RNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACT 208
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 85.1 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 7/140 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N +EA FD ++ N + A ++S C+ L +L+ G+ +H +I S + D L
Sbjct: 231 NRLHEAFALFDRMRLE-NVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKL 289
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+++MY KCG LE A V +E+PQ+ + +SWN +I G+A A+ LF E
Sbjct: 290 ATTVIDMYCKCGCLEKASEVFNELPQKGI------SSWNCMIGGLAMHGKGEAAIELFKE 343
Query: 141 MRDRELIPDGLTVRSLLCAC 160
M + PDG+T ++L AC
Sbjct: 344 MEREMVAPDGITFVNVLSAC 363
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 25/142 (17%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY LI C +++ G+++H H+L D N +++MY SLE AR V D M
Sbjct: 122 TYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNM 181
Query: 105 PQRNVIESPDL-------------------------ASWNAIIAGVASPSNANEAMSLFS 139
PQR+V+ L SWNA+IA + +EA +LF
Sbjct: 182 PQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFD 241
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
MR ++ D S+L ACT
Sbjct: 242 RMRLENVVLDKFVAASMLSACT 263
>gi|302809912|ref|XP_002986648.1| hypothetical protein SELMODRAFT_41458 [Selaginella moellendorffii]
gi|300145536|gb|EFJ12211.1| hypothetical protein SELMODRAFT_41458 [Selaginella moellendorffii]
Length = 623
Score = 85.1 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 48/123 (39%), Positives = 75/123 (60%), Gaps = 10/123 (8%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPD---VVLQNYILNMYGKCGSLEDARVV 100
STYA L+ C+ L++L G+++H HILSS S ++ N+++NMYGKCG +E+AR V
Sbjct: 3 STYARLLQACARLKALAQGQRIHAHILSSHSSSGSSSTLVLNHLINMYGKCGRVEEARAV 62
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR-DRELIPDGLTVRSLLCA 159
M E P+L SWN IIA A+ + A+++F M+ + ++PD ++ S+ A
Sbjct: 63 FASM------EHPNLVSWNTIIAAHAAGGDGRGALAVFRAMQLEASVVPDRVSFTSVANA 116
Query: 160 CTS 162
C S
Sbjct: 117 CGS 119
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 26 ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
AL F +Q + ++ + + C S R R +H + + DV++ ++
Sbjct: 90 ALAVFRAMQLEASVVPDRVSFTSVANACGSARE---ARIIHASVAARGFLDDVIIGTSLI 146
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
MY KCGS+EDAR+V D M +RN + SWNA+++G + + + + LF M
Sbjct: 147 TMYAKCGSIEDARLVFDSMAERNEV------SWNAMLSGYSQHGHGAQLLHLFRAMLQGG 200
Query: 146 LIPDGLTVRSLLCACTS 162
+ P+ +T+ ++ AC+S
Sbjct: 201 VQPNAVTLLPVVNACSS 217
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 13/123 (10%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHI-LSSKSQPDVVLQN------YILNMYGKCGSLEDA 97
TY ++ C ++ GR +H I L S+ P + L+ + +MY +CGS+++A
Sbjct: 302 TYVNFLNACDKAEMVEHGRSIHGRIVLQSRDTPALSLRTNAVVGCSLCSMYARCGSIDEA 361
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
V M QRNV+ SWNA+I A A A+++F M+ + PD +T+ S+L
Sbjct: 362 AAVFAGMEQRNVV------SWNAMIGAYAQHGRARLALAVFGGMQQHGVKPDAITLISVL 415
Query: 158 CAC 160
AC
Sbjct: 416 DAC 418
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 12/139 (8%)
Query: 26 ALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
AL F +Q + ++P T ++ C+ + G +VH L + + L N
Sbjct: 392 ALAVFGGMQQHG---VKPDAITLISVLDACAGAGDARRGSQVHGWSLQLQLR-SAALDNA 447
Query: 84 ILNMYGKCGSLEDARVVSDEM-PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+NMY K G + AR V + M QR I SW+A++A A +A EA LF M+
Sbjct: 448 AVNMYAKSGRVAAAREVFEAMDAQRRTI-----MSWSAMVAAYAGVGHAEEAFRLFHAMQ 502
Query: 143 DRELIPDGLTVRSLLCACT 161
+ P+ +T+ S+L AC+
Sbjct: 503 REGVRPNHVTLISILGACS 521
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 12/112 (10%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
+++ CSSL L+ + + +V ++N +NM+ K G ++ A + M
Sbjct: 211 VVNACSSLAQLRQADEC-------GVEEEVAVRNACINMHAKRGDVDRAAAIFASM---- 259
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ + D+ SWN ++AG A+ +EA+ L +M PD +T + L AC
Sbjct: 260 -VAARDVISWNVMMAGYANAGRGDEAVVLLRQMEQHGFHPDRVTYVNFLNAC 310
>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
Length = 863
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 81/146 (55%), Gaps = 11/146 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y++ ++ F+ + F ++P TY ++ C++LRSL+ G VHD ++ S D +
Sbjct: 433 YDDTILHFNEM---LRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFV 489
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ +++MY KCG +++A+ + D + + V+ SWNAI++G + + EA FSE
Sbjct: 490 ASTVVDMYCKCGIIDEAQKLHDRIGGQQVV------SWNAILSGFSLNKESEEAQKFFSE 543
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M D L PD T ++L C + + +
Sbjct: 544 MLDMGLKPDHFTFATVLDTCANLATI 569
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 80/143 (55%), Gaps = 8/143 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+L E+ A F + ++P T+A ++ TC++L +++LG+++H I+ + D
Sbjct: 529 SLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDE 588
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ + +++MY KCG + D+ +V +++ +R D SWNA+I G A EA+ +F
Sbjct: 589 YISSTLVDMYAKCGDMPDSLLVFEKVEKR------DFVSWNAMICGYALHGLGVEALRMF 642
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
M+ ++P+ T ++L AC+
Sbjct: 643 ERMQKENVVPNHATFVAVLRACS 665
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 74/144 (51%), Gaps = 7/144 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EA+ F F+ ++ R + + + S C+ + G++VH + S D+ + N +
Sbjct: 334 EAMGLFQFMIRSS-IRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAV 392
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
L++YGKC +L +A ++ M Q+ D SWNAIIA + + ++ + F+EM
Sbjct: 393 LDLYGKCKALMEAYLIFQGMKQK------DSVSWNAIIAALEQNGHYDDTILHFNEMLRF 446
Query: 145 ELIPDGLTVRSLLCACTSPSNVLY 168
+ PD T S+L AC + ++ Y
Sbjct: 447 GMKPDDFTYGSVLKACAALRSLEY 470
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T+A L+ +CS+L L LG +VH + + + DV + +++MYGKC SL+DA
Sbjct: 150 TTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYG 209
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
MP+RN + SW A IAG + LF EM+
Sbjct: 210 MPERNWV------SWGAAIAGCVQNEQYVRGLELFIEMQ 242
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
+YA +C+++ L GR++H H + +K D V+ I+++Y K SL DAR +
Sbjct: 252 SYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGL 311
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P V S NA++ G+ EAM LF M + D +++ + AC
Sbjct: 312 PNHTVETS------NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACA 362
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+ + + D V N +L Y G + A + D MP PD+ SWNA+++G
Sbjct: 74 VFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMP------DPDVVSWNALVSGYCQR 127
Query: 129 SNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
E++ LF EM R + PD T LL +C++
Sbjct: 128 GMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSA 161
>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 583
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ PS T+ +I +C+ L +L++G+ VH H + S D +Q ++ Y KCG +E AR
Sbjct: 103 VSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEAAR 162
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V D MP+++V+ +WN++++G A +A+ +F +MR+ PD T SLL
Sbjct: 163 QVFDRMPEKSVV------AWNSLVSGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLS 216
Query: 159 ACTSPSNV 166
AC +
Sbjct: 217 ACAQTGAI 224
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 7/148 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
QN E + + + F +T+ L+S C+ ++ LG VH +I+S +V
Sbjct: 185 QNGLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVK 244
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
L ++N+Y +CG + AR V D+M + NV A+W A+I+ + +A+ LF+
Sbjct: 245 LGTALINLYSRCGDVGKAREVFDKMKETNV------AAWTAMISAYGTHGYGKQAVDLFN 298
Query: 140 EMRDR-ELIPDGLTVRSLLCACTSPSNV 166
+M D IP+ +T ++L AC V
Sbjct: 299 KMEDDCGSIPNNVTFVAVLSACAHAGLV 326
>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
Length = 863
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 81/146 (55%), Gaps = 11/146 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y++ ++ F+ + F ++P TY ++ C++LRSL+ G VHD ++ S D +
Sbjct: 433 YDDTILHFNEM---LRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFV 489
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ +++MY KCG +++A+ + D + + V+ SWNAI++G + + EA FSE
Sbjct: 490 ASTVVDMYCKCGIIDEAQKLHDRIGGQQVV------SWNAILSGFSLNKESEEAQKFFSE 543
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M D L PD T ++L C + + +
Sbjct: 544 MLDMGLKPDHFTFATVLDTCANLATI 569
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 80/143 (55%), Gaps = 8/143 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+L E+ A F + ++P T+A ++ TC++L +++LG+++H I+ + D
Sbjct: 529 SLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDE 588
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ + +++MY KCG + D+ +V +++ +R D SWNA+I G A EA+ +F
Sbjct: 589 YISSTLVDMYAKCGDMPDSLLVFEKVEKR------DFVSWNAMICGYALHGLGVEALRMF 642
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
M+ ++P+ T ++L AC+
Sbjct: 643 ERMQKENVVPNHATFVAVLRACS 665
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 74/144 (51%), Gaps = 7/144 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EA+ F F+ ++ R + + + S C+ + G++VH + S D+ + N +
Sbjct: 334 EAMGLFQFMIRSS-IRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAV 392
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
L++YGKC +L +A ++ M Q+ D SWNAIIA + + ++ + F+EM
Sbjct: 393 LDLYGKCKALMEAYLIFQGMKQK------DSVSWNAIIAALEQNGHYDDTILHFNEMLRF 446
Query: 145 ELIPDGLTVRSLLCACTSPSNVLY 168
+ PD T S+L AC + ++ Y
Sbjct: 447 GMKPDDFTYGSVLKACAALRSLEY 470
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T+A L+ +CS+L L LG +VH + + + DV + +++MYGKC SL+DA
Sbjct: 150 TTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYG 209
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
MP+RN + SW A IAG + LF EM+
Sbjct: 210 MPERNWV------SWGAAIAGCVQNEQYVRGLELFIEMQ 242
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
+YA +C+++ L GR++H H + +K D V+ I+++Y K SL DAR +
Sbjct: 252 SYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGL 311
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P V S NA++ G+ EAM LF M + D +++ + AC
Sbjct: 312 PNHTVETS------NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACA 362
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+ + + D V N +L Y G + A + D MP PD+ SWNA+++G
Sbjct: 74 VFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMP------DPDVVSWNALVSGYCQR 127
Query: 129 SNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
E++ LF EM R + PD T LL +C++
Sbjct: 128 GMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSA 161
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
F T ++ C L L LGR V +L K + + + + +++MYGKCG L A
Sbjct: 224 GFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISA 283
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R V D MP ++V+ +WNAII G A +NEA+ LF+ MR+ PD +T+ +L
Sbjct: 284 RRVFDSMPNKDVV------TWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVL 337
Query: 158 CACTS 162
AC++
Sbjct: 338 SACST 342
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 78/145 (53%), Gaps = 9/145 (6%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
NEA+V F+ ++ R + L S CS++ +L LG+ V H Q DV + +
Sbjct: 312 NEAIVLFNGMREAGPHPDRVTMIEVL-SACSTIGALDLGKWVETHASEKGLQHDVYVASA 370
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-R 142
+++MY KCGSL+DA V + MP +N + SWNA+I+ +A A EA+SLF M +
Sbjct: 371 LIDMYAKCGSLDDAVRVFESMPHKNEV------SWNAMISALAFHGQAQEALSLFRRMSK 424
Query: 143 DRELI-PDGLTVRSLLCACTSPSNV 166
D + P+ +T +L AC V
Sbjct: 425 DNGTVQPNDITFIGVLSACVHAGLV 449
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY L C ++R L G+ H + + D + + ++ MY +CG + AR V DEM
Sbjct: 130 TYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEM 189
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
R DL SWN++I+G + EA+ LF EMR+ PD +T+ S+L AC
Sbjct: 190 GDR------DLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGAC 239
>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 85.1 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 42/117 (35%), Positives = 67/117 (57%), Gaps = 6/117 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y L+ C+ + L GR VH H++ S + D+V+ N +LNMY KCGSLE+AR V D+MP
Sbjct: 54 YNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMP 113
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+R D +W +I+G + +A+ LF++M P+ T+ S++ A +
Sbjct: 114 ER------DFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAA 164
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A + Q RPS +YA L CSS L+ G+ VH +++ S + N +L+
Sbjct: 237 ALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLD 296
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY K GS+ DAR + D + +R+V+ SWN+++ A NEA+ F EMR +
Sbjct: 297 MYAKSGSIHDARKIFDRLAKRDVV------SWNSLLTAYAQHGFGNEAVCWFEEMRRGGI 350
Query: 147 IPDGLTVRSLLCACT 161
P+ ++ S+L AC+
Sbjct: 351 RPNEISFLSVLTACS 365
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ALV F+ + F P+ T + +I ++ R G ++H + +V + +
Sbjct: 135 DALVLFNQM---LRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGS 191
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+L++Y + G ++DA++V D + RN + SWNA+IAG A +A+ LF M
Sbjct: 192 ALLDLYTRYGLMDDAQLVFDALESRNDV------SWNALIAGHARRCGTEKALELFQGML 245
Query: 143 DRELIPDGLTVRSLLCACTS 162
P + SL AC+S
Sbjct: 246 REGFRPSHFSYASLFGACSS 265
>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
Length = 485
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ CS L +L GRK+H + D+V+ N ++N YG+CGSL DA++V D M
Sbjct: 115 TFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGM 174
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+R+VI SW+++I+ A +EAM L+ M +PD + S+L AC++
Sbjct: 175 RRRDVI------SWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSG 228
Query: 165 NV 166
V
Sbjct: 229 VV 230
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 70/119 (58%), Gaps = 8/119 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY ++S ++ SL+ GR+VH + + + DV++ ++NMYGKC S+E+AR ++
Sbjct: 12 TYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEARAAFEK- 70
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD--RELIPDGLTVRSLLCACT 161
I P++ SW+A++A A +A A+ L+ EM + + P+ +T +LL AC+
Sbjct: 71 -----ISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDACS 124
>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 85.1 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 45/102 (44%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
S Y+ LI +C R LQ G+KVH HI S P + + N +L MY KC SL D++ + DE
Sbjct: 71 SVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDE 130
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
MP+R DL SWN +I+G A EA SLF +M +R+
Sbjct: 131 MPER------DLCSWNILISGYAKMGLLQEAKSLFDKMPERD 166
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 8/134 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
FD + IRP+ T++ +++ C++ S +LG+KVH ++ P + +++
Sbjct: 288 GFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVH 347
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG++ A V E PQ PDL SW ++IAG A +EA+ F +
Sbjct: 348 MYSKCGNMVSAERVFKETPQ------PDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGT 401
Query: 147 IPDGLTVRSLLCAC 160
PD +T +L AC
Sbjct: 402 QPDHITFVGVLSAC 415
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 76/142 (53%), Gaps = 6/142 (4%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
NEAL F ++ + N + T + ++ +++ L++G+++H +I+ + D V+ +
Sbjct: 184 NEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSA 243
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+ +MYGKCGS+E+AR + D+M R D+ +W A+I E LF+++
Sbjct: 244 LSDMYGKCGSIEEARHIFDKMVDR------DIVTWTAMIDRYFQDGRRKEGFDLFADLLR 297
Query: 144 RELIPDGLTVRSLLCACTSPSN 165
+ P+ T +L AC + ++
Sbjct: 298 SGIRPNEFTFSGVLNACANQTS 319
>gi|359473776|ref|XP_002267026.2| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
chloroplastic-like [Vitis vinifera]
Length = 835
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 71/138 (51%), Gaps = 8/138 (5%)
Query: 29 AFDFLQ--NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A DFL+ ++ + + P +Y CL C LRSL GR +HD + + P ++N +L
Sbjct: 71 AHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLR 130
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY CGS D + V DEM +N L SW +I+ A +A+ LFS+M+ +
Sbjct: 131 MYCDCGSCIDVQKVFDEMLMKN------LVSWVIVISAYAKNGELEKAIRLFSDMQASGI 184
Query: 147 IPDGLTVRSLLCACTSPS 164
P+ SLL +C PS
Sbjct: 185 RPNSAVYMSLLQSCLGPS 202
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 41 IRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
IRP + Y L+ +C L+LG+++H H++ ++ ++ ++ I NMY +CG LE A+
Sbjct: 184 IRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAK 243
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+V D M +N + +W ++ G A+ LF+ M
Sbjct: 244 LVFDGMDAQNAV------TWTGLMVGYTQAKKLEVALELFARM 280
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y + C++ +L +G + H + + ++ ++ MY KCG L+ AR +
Sbjct: 393 YTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFES-- 450
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I+ PD +W AII+G A NA EA+ F M+ + P+ +T ++L AC+
Sbjct: 451 ----IDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACS 502
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++ ++ C L +GR++H HI+ ++ +V + +++ Y KCG +E A
Sbjct: 291 VFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESA------Y 344
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
I P+ SW+A+I+G + + + +F+ +R ++ + S+ AC + +
Sbjct: 345 RSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQA 404
Query: 165 NV 166
N+
Sbjct: 405 NL 406
>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 7/146 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L +A+ F +Q R P T ++S C+ L +L LG+ VHD I + ++ +
Sbjct: 388 GLTEKAISLFQEMQK-CEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFV 446
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+++MY KCGS+ +A+ + MP++N + +WNA+I+G +EA++LF+E
Sbjct: 447 STALIDMYAKCGSITEAQRLFSMMPEKNAV------TWNAMISGYGLHGYGHEALNLFNE 500
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M + P G+T S+L AC+ V
Sbjct: 501 MLHSRVSPTGVTFLSVLYACSHAGLV 526
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 14/139 (10%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
L+ E LV+ + ++ S+ LI L L R +H S + +
Sbjct: 295 LFKELLVSGE--------KVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVS 346
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+ +Y + +E AR++ DE +++ LASWNA+I+G A +A+SLF EM
Sbjct: 347 TALTTVYSRLNEIESARLLFDESSEKS------LASWNAMISGYAQNGLTEKAISLFQEM 400
Query: 142 RDRELIPDGLTVRSLLCAC 160
+ E+ P+ +TV S+L AC
Sbjct: 401 QKCEVRPNPVTVTSILSAC 419
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 23 YNEALVAF-DFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
++EA++ F D ++ F +T A ++ + L+ L LG + + +
Sbjct: 188 FDEAILIFGDMVKGGIGFD--STTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVI 245
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+ +Y KCG +E AR++ ++ Q PDL S+NA+I+G + ++ LF E+
Sbjct: 246 TGLACLYSKCGEIETARLLFGQIGQ------PDLVSYNAMISGYTCNNETESSVRLFKEL 299
>gi|302763107|ref|XP_002964975.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
gi|300167208|gb|EFJ33813.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
Length = 703
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 87/162 (53%), Gaps = 23/162 (14%)
Query: 14 YNSQPIQNLYNEALVAFDFLQNNTN------FR------IRP--STYACLISTCSSLRSL 59
++S P ++L++ + F +N FR I+P +T + ++ CSSLR L
Sbjct: 44 FHSLPRRSLFSWNFIIAAFAKNRHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRDL 103
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
+ G+K+H L+ +++QN +++MY +C L+ ARVV D+ IES + SWN
Sbjct: 104 EEGKKIHSRALARGLSSSIIVQNALVSMYARCSRLDVARVVFDK------IESKSVVSWN 157
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
A+IA A A +A+ LF M EL P+ +T S+ AC+
Sbjct: 158 AMIAACARQGEAEQALQLFKRM---ELEPNEVTFASVFNACS 196
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
+L GR++H HI++S D L +++L MYGKCGS++DA V +P+R+ L S
Sbjct: 1 ALPQGRRIHAHIVASGLASDGFLGDHLLQMYGKCGSVDDAIQVFHSLPRRS------LFS 54
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
WN IIA A + +A+ +F M + PD T+ S+L AC+S
Sbjct: 55 WNFIIAAFAKNRHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSS 99
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + +SLR L+LG ++H+ ++ ++ +QN +++MYGKC L+ AR V +
Sbjct: 289 TVVIALGISASLRLLKLGIELHELSVAHGYDSNIKVQNALISMYGKCNELDAARRVFSK- 347
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+ + D+ SW A+I EA+ L+ +M + PD +T S+L AC++ S
Sbjct: 348 -----VRAHDVVSWTALIVAYTQHGRNREALELYKQMEGEGMEPDKVTFTSVLSACSNTS 402
Query: 165 NV 166
++
Sbjct: 403 DL 404
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQ-PDVVLQNYILNMYGKCGSLEDARVVSDE 103
T+ ++S CS+ L+LG+ +H +L+ K D VL ++NMY KCG L+ +S E
Sbjct: 390 TFTSVLSACSNTSDLELGQALHARLLARKDGFSDGVLVAALINMYVKCGRLD----LSSE 445
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ Q + ++ + WNA+I + A+ L+ M+ R L PD T+ S+L AC
Sbjct: 446 IFQ-SCKDTKAVVVWNAMITAYEQEGYSRAAVDLYDMMKQRGLDPDESTLSSILSACA 502
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 60/110 (54%), Gaps = 7/110 (6%)
Query: 45 TYACLISTCSSL-RSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T+A + + CS L ++G+++HD I S + +V + I+ MYGK G + AR V +
Sbjct: 187 TFASVFNACSLLPDHREVGKRIHDRIRGSHLEANVTVATAIVTMYGKFGKVGMARQVFNG 246
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTV 153
+ +NV+ SWNA++ + EA+ ++ EM +++ D +TV
Sbjct: 247 IQHKNVV------SWNAMLGAYTQNNLDREALEVYHEMVAQKVQRDEVTV 290
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK--SQPD 77
Q Y+ A V + ST + ++S C+ L+ L+ G ++H I++S+ SQ
Sbjct: 468 QEGYSRAAVDLYDMMKQRGLDPDESTLSSILSACAELQDLEKGEQLHVEIIASRDCSQNP 527
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIA 123
VVL N +++MY CG + +A+ V M R+V+ SW +I+
Sbjct: 528 VVL-NALISMYASCGEIREAKAVFKRMKNRDVV------SWTILIS 566
>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 6/119 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P T ++S C+ L +L +G+ VH I S + + +V + +++MY KCGS+ +AR + D
Sbjct: 415 PVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFD 474
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
M +NV+ +WNA+I G + EA+ LF EM + P G+T S+L AC+
Sbjct: 475 LMVDKNVV------TWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACS 527
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L ++ + L+ TN R TYA IS S L ++G +H H + ++ +
Sbjct: 91 GLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFV 150
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ I+++Y K E AR V D MP+R D WN +I+G + S +++ +F +
Sbjct: 151 GSAIVDLYFKFTRAELARKVFDVMPER------DTVLWNTMISGFSRNSYFEDSIRVFVD 204
Query: 141 MRDRELIPDGLTVRSLLCA 159
M D L D T+ ++L A
Sbjct: 205 MLDVGLSFDSTTLATVLTA 223
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 15/125 (12%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS----QPDVVLQNYILNMYGKCGSLE 95
R+ ST LI LQL R + + LS K QP V + +Y + ++
Sbjct: 312 RVNSSTLVGLIPVYLPFNHLQLSRLIQN--LSLKIGIILQPSV--STALTTVYCRLNEVQ 367
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
AR + DE P+++ LASWNA+I+G + A+SLF EM +L P+ +TV S
Sbjct: 368 FARQLFDESPEKS------LASWNAMISGYTQNGLTDRAISLFQEMMP-QLSPNPVTVTS 420
Query: 156 LLCAC 160
+L AC
Sbjct: 421 ILSAC 425
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLEDARVVS 101
+T A +++ + L+ +LG + L+SK DV + ++++Y KCG R++
Sbjct: 215 TTLATVLTAVAELQEYRLGMGIQ--CLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILF 272
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
D++ Q PDL S+NA+I+G A++LF REL+ G V S
Sbjct: 273 DQIDQ------PDLISYNAMISGYTFNHETESAVTLF-----RELLASGQRVNS 315
>gi|302770356|ref|XP_002968597.1| hypothetical protein SELMODRAFT_89230 [Selaginella moellendorffii]
gi|300164241|gb|EFJ30851.1| hypothetical protein SELMODRAFT_89230 [Selaginella moellendorffii]
Length = 631
Score = 85.1 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 45/126 (35%), Positives = 73/126 (57%), Gaps = 7/126 (5%)
Query: 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
R + +A L+ C RSL GR++H I+ + D+ L N+++ MYGKCG++EDAR V
Sbjct: 52 RVAAFASLLQQCGRSRSLPDGRRIHAEIVDTGLGKDLFLGNHLIQMYGKCGAMEDARAVF 111
Query: 102 DEMPQRNVIESPD-LASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
++ IESP+ + SW A+I+G A + A+ F +M + P+ +T S+L AC
Sbjct: 112 EK------IESPNSVVSWTAMISGFALHGREDLALDFFRKMVAEGVRPNEVTFVSILGAC 165
Query: 161 TSPSNV 166
+ +V
Sbjct: 166 AAARDV 171
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 74/144 (51%), Gaps = 9/144 (6%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSK-SQPDV 78
L+ +A DF + +RP+ T+ ++ C++ R ++ G +H+ + SS+ + +
Sbjct: 132 LHGREDLALDFFRKMVAEGVRPNEVTFVSILGACAAARDVKHGTAIHELVESSEFGRSYL 191
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ +++MYGKCG E A V ++M +R DL WNA+I + +A+ LF
Sbjct: 192 SVGTALIDMYGKCGRPELASRVFEKMERR------DLVVWNAMITVCSQQGLDEQALRLF 245
Query: 139 SEMRDRELIPDGLTVRSLLCACTS 162
M PD +T+ + L AC++
Sbjct: 246 RVMDLEGHTPDEVTLVAALEACSN 269
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSS--KSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
T + CS+L SL G+K+H+ IL + S +VL ++NMYG+ G LEDA V +
Sbjct: 259 TLVAALEACSNLNSLAAGKKLHELILDAGLDSSIKMVLATALVNMYGRYGQLEDALRVFE 318
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+M N L +W A+IA A + + A+ L M + D + S+L AC+
Sbjct: 319 KMNHWN------LVAWTALIAAFAQHGDVH-AIDLSWRMHLEGVQADDIVFLSVLHACS 370
>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 788
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 6/119 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P T ++S C+ L +L +G+ VH I S + + +V + +++MY KCGS+ +AR + D
Sbjct: 415 PVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFD 474
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
M +NV+ +WNA+I G + EA+ LF EM + P G+T S+L AC+
Sbjct: 475 LMVDKNVV------TWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACS 527
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L ++ + L+ TN R TYA IS S L ++G +H H + ++ +
Sbjct: 91 GLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFV 150
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ I+++Y K E AR V D MP+R D WN +I+G + S +++ +F +
Sbjct: 151 GSAIVDLYFKFTRAELARKVFDVMPER------DTVLWNTMISGFSRNSYFEDSIRVFVD 204
Query: 141 MRDRELIPDGLTVRSLLCA 159
M D L D T+ ++L A
Sbjct: 205 MLDVGLSFDSTTLATVLTA 223
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 15/125 (12%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS----QPDVVLQNYILNMYGKCGSLE 95
R+ ST LI LQL R + + LS K QP V + +Y + ++
Sbjct: 312 RVNSSTLVGLIPVYLPFNHLQLSRLIQN--LSLKIGIILQPSV--STALTTVYCRLNEVQ 367
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
AR + DE P+++ LASWNA+I+G + A+SLF EM +L P+ +TV S
Sbjct: 368 FARQLFDESPEKS------LASWNAMISGYTQNGLTDRAISLFQEMMP-QLSPNPVTVTS 420
Query: 156 LLCAC 160
+L AC
Sbjct: 421 ILSAC 425
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLEDARVVS 101
+T A +++ + L+ +LG + L+SK DV + ++++Y KCG R++
Sbjct: 215 TTLATVLTAVAELQEYRLGMGIQ--CLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILF 272
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
D++ Q PDL S+NA+I+G A++LF REL+ G V S
Sbjct: 273 DQIDQ------PDLISYNAMISGYTFNHETESAVTLF-----RELLASGQRVNS 315
>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 615
Score = 85.1 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 77/137 (56%), Gaps = 7/137 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EALV F +Q ++ T ++S C+ L +L+LGR +H+++ + V + +
Sbjct: 226 EALVLFREMQAK-GLKLTSVTLISVLSACALLGALELGRWIHEYVRKVQLDSLVKVNTAL 284
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MYGKCGSLEDA V M ES D +W+ +I A+ S EA+SLF EM+ +
Sbjct: 285 IDMYGKCGSLEDAISVFQGM------ESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQ 338
Query: 145 ELIPDGLTVRSLLCACT 161
+ PD +T +L AC+
Sbjct: 339 GIKPDDVTFLGVLYACS 355
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 41 IRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ P TY L+ C++ R+ + GR+ H + + + ++NMY +CG AR
Sbjct: 138 VAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAAR 197
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+ + V+ S+NA+I S EA+ LF EM+ + L +T+ S+L
Sbjct: 198 TMFGRVDGECVV------SYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLS 251
Query: 159 AC 160
AC
Sbjct: 252 AC 253
>gi|357501247|ref|XP_003620912.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495927|gb|AES77130.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 415
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 6/118 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
S + L+ C L+SL+LG++VH+ + SK +V L N ++ +Y KCGS++DAR V D+
Sbjct: 100 SDFLSLLKLCEDLKSLELGKRVHEFLRRSKFGGNVELCNRLIGLYVKCGSVKDARKVFDK 159
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
MP RNV SWN +I G + + +F +MR + ++PD T +L C
Sbjct: 160 MPDRNV------GSWNLMIGGYNVNGLGIDGLLVFKQMRQQGIVPDEETFALVLAVCA 211
>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g57430, chloroplastic-like [Cucumis sativus]
Length = 863
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 81/142 (57%), Gaps = 11/142 (7%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
L EAL + +Q+ I+P + + L + C++L + + G+++H H+L DV
Sbjct: 470 GLGEEALKMYLRMQDRD---IKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDV 526
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
N ++NMY KCGS++DA + +E+ R ++ SW+A+I G+A + +A+ LF
Sbjct: 527 FAGNSLVNMYAKCGSIDDASCIFNEISWRGIV------SWSAMIGGLAQHGHGRKALQLF 580
Query: 139 SEMRDRELIPDGLTVRSLLCAC 160
+M ++P+ +T+ S+L AC
Sbjct: 581 YQMLKNGILPNHITLVSVLSAC 602
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 79/138 (57%), Gaps = 8/138 (5%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
L+ + +A L ++R+ PS T + + C+++ ++LGR++H ++ +PD
Sbjct: 266 LHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSF 325
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ +++MY KCG L+DAR+V D MP ++VI WN+II+G ++ EAMSLF+
Sbjct: 326 VGVGLIDMYSKCGLLQDARMVFDLMPXKDVI------VWNSIISGYSNCGYDIEAMSLFT 379
Query: 140 EMRDRELIPDGLTVRSLL 157
M L + T+ ++L
Sbjct: 380 NMYKEGLEFNQTTLSTIL 397
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Query: 41 IRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I P+ ++ +++ C+ L G KVH +++ D N +L+MY K G E A
Sbjct: 184 ISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAI 243
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V E+P+ PD+ SWNA+IAG + A+ L +M + P T+ S L
Sbjct: 244 AVFYEIPK------PDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALK 297
Query: 159 ACTS 162
AC +
Sbjct: 298 ACAA 301
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 18/144 (12%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N+Y E L +F Q +T + ++ + + ++ +VH + S Q D +
Sbjct: 380 NMYKEGL---EFNQ---------TTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYV 427
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +L+ YGKC LEDA V + P + DL ++ ++I + EA+ ++
Sbjct: 428 ANSLLDSYGKCCLLEDAAKVFEVCP------AEDLVAYTSMITAYSQYGLGEEALKMYLR 481
Query: 141 MRDRELIPDGLTVRSLLCACTSPS 164
M+DR++ PD SL AC + S
Sbjct: 482 MQDRDIKPDAFIFSSLFNACANLS 505
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIES--PDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+N+Y KC AR + VI+S PDL SW+A+I+G EA+ + EM
Sbjct: 89 VNLYSKCQCFRVAR--------KLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMY 140
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
+ T S+L C+ N+
Sbjct: 141 LLGAKGNEFTFSSVLKGCSLTRNL 164
>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
Length = 629
Score = 85.1 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 14/129 (10%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSS------KSQPDVVLQNYILNMYGKCG 92
I+P T ++ CS L +L GR++H +++ S K DV+L+N +++MY KCG
Sbjct: 334 IQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCG 393
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
S+ DA +V + M + D+ASWN +I G NEA+ +FS M + +L PD +T
Sbjct: 394 SMRDAHLVFERMSNK------DVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVT 447
Query: 153 VRSLLCACT 161
+L AC+
Sbjct: 448 FVGVLSACS 456
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 11/131 (8%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
F+F Q N + P T+ C I C L L++ +K+H + + DV + + ++N
Sbjct: 123 GFEFYQKMRNEGVMPDKFTFPCAIKAC--LDVLEI-KKIHGLLFKFGLELDVFIGSALVN 179
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
Y K G +E A+V +E+P R+V+ WNA++ G A + F M D +
Sbjct: 180 CYLKFGLMEHAQVAFEELPIRDVV------LWNAMVNGYAQIGQFEMVLETFRRMNDESV 233
Query: 147 IPDGLTVRSLL 157
+P TV L
Sbjct: 234 VPSRFTVTGXL 244
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
+S + + L GR +H + V + N +++MYGKC +EDA + + M ++
Sbjct: 244 LSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREK-- 301
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
D+ SWN+I++ + + + L M + PD +TV ++L AC+ + +++
Sbjct: 302 ----DIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMH 356
>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 905
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 81/146 (55%), Gaps = 11/146 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y++ ++ F+ + F ++P TY ++ C++LRSL+ G VHD ++ S D +
Sbjct: 475 YDDTILHFNEM---LRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFV 531
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ +++MY KCG +++A+ + D + + V+ SWNAI++G + + EA FSE
Sbjct: 532 ASTVVDMYCKCGIIDEAQKLHDRIGGQQVV------SWNAILSGFSLNKESEEAQKFFSE 585
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M D L PD T ++L C + + +
Sbjct: 586 MLDMGLKPDHFTFATVLDTCANLATI 611
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 80/143 (55%), Gaps = 8/143 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+L E+ A F + ++P T+A ++ TC++L +++LG+++H I+ + D
Sbjct: 571 SLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDE 630
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ + +++MY KCG + D+ +V +++ +R D SWNA+I G A EA+ +F
Sbjct: 631 YISSTLVDMYAKCGDMPDSLLVFEKVEKR------DFVSWNAMICGYALHGLGVEALRMF 684
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
M+ ++P+ T ++L AC+
Sbjct: 685 ERMQKENVVPNHATFVAVLRACS 707
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 74/144 (51%), Gaps = 7/144 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EA+ F F+ ++ R + + + S C+ + G++VH + S D+ + N +
Sbjct: 376 EAMGLFQFM-IRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAV 434
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
L++YGKC +L +A ++ M Q+ D SWNAIIA + + ++ + F+EM
Sbjct: 435 LDLYGKCKALMEAYLIFQGMKQK------DSVSWNAIIAALEQNGHYDDTILHFNEMLRF 488
Query: 145 ELIPDGLTVRSLLCACTSPSNVLY 168
+ PD T S+L AC + ++ Y
Sbjct: 489 GMKPDDFTYGSVLKACAALRSLEY 512
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T+A L+ +CS+L L LG +VH + + + DV + +++MYGKC SL+DA
Sbjct: 192 TTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYG 251
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
MP+RN + SW A IAG + LF EM+
Sbjct: 252 MPERNWV------SWGAAIAGCVQNEQYVRGLELFIEMQ 284
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
+YA +C+++ L GR++H H + +K D V+ I+++Y K SL DAR +
Sbjct: 294 SYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGL 353
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P V S NA++ G+ EAM LF M + D +++ + AC
Sbjct: 354 PNHTVETS------NAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACA 404
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+ + + D V N +L Y G + A + D MP PD+ SWNA+++G
Sbjct: 116 VFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMP------DPDVVSWNALVSGYCQR 169
Query: 129 SNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
E++ LF EM R + PD T LL +C++
Sbjct: 170 GMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSA 203
>gi|225437286|ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 468
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 81/146 (55%), Gaps = 11/146 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y++AL+AF+ +Q + P+ T +S C+ +L++G +H+ I S + DV+L
Sbjct: 191 YDDALIAFEQMQYAG---VVPNHVTMVNALSACADFGALEMGVWIHEFIRRSGWEFDVIL 247
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+++MYGKCG +E+ VV M ++NV +WN++I G+A + EA+ F
Sbjct: 248 GTSLIDMYGKCGRIEEGLVVFRSMKEKNVF------TWNSLIKGLALARSGAEAVWWFYR 301
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M + D +T+ ++LCAC+ V
Sbjct: 302 MEQEGIKADEVTLIAVLCACSHSGMV 327
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ + + + L G+ +H H++ D+ +QN +LN+Y CG + V DEM
Sbjct: 111 TFPFLLKSLADFKGLSEGQCIHTHVVKLGQFDDIYVQNSLLNVYASCGDMGLCMRVFDEM 170
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P R+V+ SW +I G S ++A+ F +M+ ++P+ +T+ + L AC
Sbjct: 171 PHRDVV------SWTVLITGYRSAERYDDALIAFEQMQYAGVVPNHVTMVNALSACA 221
>gi|330689867|gb|AEC33263.1| putative pentatricopeptide protein [Triticum aestivum]
Length = 644
Score = 85.1 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 72/122 (59%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++S C+ +++LGR+VH + S ++ N ++NMY KCG + DAR V D M
Sbjct: 353 TLATVLSACTEQLAVRLGREVHADAIRSMVDRHSLVANGLINMYAKCGRVADARTVFDGM 412
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
R DL SWN+++AG ++A+++F++M + ++ PDG+T ++L AC+
Sbjct: 413 KSR------DLVSWNSMLAGYGMHGLCDDALAVFTDMAEAKVDPDGVTFVAVLSACSHAG 466
Query: 165 NV 166
V
Sbjct: 467 RV 468
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 34/151 (22%)
Query: 45 TYACLISTCSSLRSLQL--GRKVHDH-ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
+ A +S C L L GR +H + + + + + N ++ MYGK G ++DAR V
Sbjct: 212 SVAVALSACPYAGDLALAKGRAIHGYGVAKGVVRGYLFVTNSLVCMYGKLGKMDDAREVF 271
Query: 102 DEMPQRNVIE-------------------------------SPDLASWNAIIAGVASPSN 130
E +RN + +P++ SW+A+I G AS +
Sbjct: 272 REAGERNTVTWNALITSYAAAGMCDEALNVLVRMEQRGGMVAPNVMSWSAVIGGFASSGD 331
Query: 131 ANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
A+ LF M+ + L P+ +T+ ++L ACT
Sbjct: 332 NERALELFRRMQQQWLSPNVVTLATVLSACT 362
Score = 45.1 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 8/118 (6%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P++Y ++ ++ + H L + PDV Q +L Y + G ++A V D
Sbjct: 74 PNSYTLPLALRAATSPIASAIHAHALHLGLHAHPDVAGQ--LLAAYARHGRADEAHHVFD 131
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR-ELIPDGLTVRSLLCA 159
MP + SWN +I+ + + N AM+ F+ M E +PD +T +LL A
Sbjct: 132 AMPSKRAT-----MSWNTLISAYSVCCDPNNAMATFARMAAAGEALPDAVTWTTLLSA 184
Score = 35.0 bits (79), Expect = 9.9, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDH-ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T+ ++S CS + GR++ D IL K P + ++++ G+ G L++A +
Sbjct: 454 TFVAVLSACSHAGRVSEGRRLFDQMILEHKISPSMEHYTCMVDLLGRAGLLKEASEFIET 513
Query: 104 MPQRNVIESPDLASWNAI-----IAGVASPSNANEAMSL 137
MP DL W A+ I G A+ + A A +L
Sbjct: 514 MPM-----GADLCVWGALLNSCRIHGDAAMAEATIAKAL 547
>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
Length = 1122
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 86/160 (53%), Gaps = 8/160 (5%)
Query: 3 RNLKTQLRFTFYNSQPIQN-LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQL 61
R+ K+ + +T + +QN + EAL F ++ R +T++ +I SSL + L
Sbjct: 398 RSEKSAISWTALITGYVQNGQHEEALQLFSDMRR-AGLRPDRATFSSIIKASSSLAMIGL 456
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
GR++H +++ S + V + +++MY KCG L++A DEMP+RN I SWNA+
Sbjct: 457 GRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSI------SWNAV 510
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I+ A A A+ +F M PD +T S+L AC+
Sbjct: 511 ISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACS 550
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 19/137 (13%)
Query: 20 QNLYNEALVAFDFLQNN----TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQ 75
+ L+ +AL F ++ T+F T++ +++ + + L LG +VH +L S S
Sbjct: 214 EGLHTQALQLFAAMRRAGIPATHF-----TFSSILTVAAGMAHLLLGHQVHALVLRSTSV 268
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
+V + N +L+ Y KC L+D R + DEMP+R D S+N IIA A A +
Sbjct: 269 LNVFVNNSLLDFYSKCDCLDDMRRLFDEMPER------DNVSYNVIIAAYAWNQCAATVL 322
Query: 136 SLFSEMR----DRELIP 148
LF EM+ DR+++P
Sbjct: 323 RLFREMQKLGFDRQVLP 339
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
YA ++S SL + +G+++H ++ + +L N +++MY KCG L+ A+
Sbjct: 340 YATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRS 399
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+++ I SW A+I G EA+ LFS+MR L PD T S++ A +S
Sbjct: 400 EKSAI------SWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSS 450
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N IL+ Y G L A+ + P RN +W ++ A+ ++A+SLF M
Sbjct: 78 NLILSAYSSSGDLPAAQHLFLSSPHRNA------TTWTIMMRAHAAAGRTSDALSLFRAM 131
Query: 142 RDRELIPDGLTVRSL--LCACTSPS 164
+IPD +TV ++ L CT PS
Sbjct: 132 LGEGVIPDRVTVTTVLNLPGCTVPS 156
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 6/139 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y +A+ F +Q+ T ++S C+ L +L LG+ +H I +K + + L N
Sbjct: 271 YADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGN 330
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+ +MY KCG + +A+ V EM +R+VI SW+ II G+A ANEA + F+EM
Sbjct: 331 ALADMYAKCGCVLEAKGVFHEMHERDVI------SWSIIIMGLAMYGYANEAFNFFAEMI 384
Query: 143 DRELIPDGLTVRSLLCACT 161
+ L P+ ++ LL ACT
Sbjct: 385 EDGLEPNDISFMGLLTACT 403
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 23/162 (14%)
Query: 1 MIRNLKTQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQ 60
+RN L F + Q L++E +V D + NT LIS +
Sbjct: 163 FVRNSLVDLYFKVGCNCIAQKLFDE-MVVRDVVSWNT-----------LISGYCFSGMVD 210
Query: 61 LGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNA 120
R V D ++ + ++V + +++ Y + G+LE+AR + + MP RNV+ SWNA
Sbjct: 211 KARMVFDGMM----EKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVV------SWNA 260
Query: 121 IIAGVASPSNANEAMSLFSEMR-DRELIPDGLTVRSLLCACT 161
+IAG A +A+ LF +M+ + L P+ +T+ S+L AC
Sbjct: 261 MIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACA 302
>gi|302776722|ref|XP_002971510.1| hypothetical protein SELMODRAFT_172234 [Selaginella moellendorffii]
gi|300160642|gb|EFJ27259.1| hypothetical protein SELMODRAFT_172234 [Selaginella moellendorffii]
Length = 357
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 28/149 (18%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR-VVSDE 103
T++ L S CS+LRSL GR +H L D++LQN +LNMY KCGSL D R ++S
Sbjct: 9 TFSTLFSACSNLRSLDAGRAIHKR-LGKSLVSDLILQNALLNMYSKCGSLADVRKIISRG 67
Query: 104 MPQRNVIE------------------------SPDLASWNAIIAGVASPSNANEAMSLFS 139
+ V+ S ++ SWNA+IAG ++ EA+ L+
Sbjct: 68 LESDTVVGTALVNMYARCGDVVTARTNFDNLCSKNIVSWNAMIAGYVQAGSSQEALLLYE 127
Query: 140 EMRDRELIP--DGLTVRSLLCACTSPSNV 166
+M+ E P DGLT S+L AC++ +
Sbjct: 128 KMQQDEAKPKADGLTFASVLAACSNLGEI 156
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 81/141 (57%), Gaps = 13/141 (9%)
Query: 25 EALVAFDFLQNNTNFRIRPS----TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
EAL+ ++ +Q + +P T+A +++ CS+L + GRK+HD + +S D+++
Sbjct: 121 EALLLYEKMQQD---EAKPKADGLTFASVLAACSNLGEISRGRKLHDDVAASDFAEDLIV 177
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
QN +++MYGKCG+L ++R V + + R+VI SW +++ A + EA+ L
Sbjct: 178 QNALVDMYGKCGNLVESRNVFEGIKSRSVI------SWTSMVTAYARHGHGAEAVELVWR 231
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M + D +T+ S+L AC+
Sbjct: 232 MSLEGVEADDVTLTSILQACS 252
>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
Length = 746
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/144 (32%), Positives = 80/144 (55%), Gaps = 7/144 (4%)
Query: 19 IQN-LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+QN L NEA+ ++ + N+ + T+ ++ S L LQ G ++H + + D
Sbjct: 347 MQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLD 406
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + ++++Y KCG L +A + + MP+R+ WNAIIAG+ + +A+SL
Sbjct: 407 VYVTTCLIDLYAKCGKLVEAMFLFEHMPRRST------GPWNAIIAGLGVHGHGAKALSL 460
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
FS+M+ E+ PD +T SLL AC+
Sbjct: 461 FSQMQQEEIKPDHVTFVSLLAACS 484
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D++ N +++MY K ++ A+ V D +P R+V+ SWN +I G ANEA+
Sbjct: 304 DIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVV------SWNTLITGYMQNGLANEAIR 357
Query: 137 LFSEMRDRE 145
++++M + E
Sbjct: 358 IYNDMHNHE 366
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
P+V +++ Y + G + +A V DEMP+R D+ +WNA+++G+ + A +A
Sbjct: 99 HPNVFASGSLVHAYLRFGRVAEAYRVFDEMPER------DVPAWNAMLSGLCRNTRAADA 152
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCAC 160
++L M + D +T+ S+L C
Sbjct: 153 VTLLGRMVGEGVAGDAVTLSSVLPMC 178
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + ++ C L L +H + + ++ + N ++++YGK G L +A V M
Sbjct: 170 TLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGM 229
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
R DL +WN+II+ A+ LF M + + PD LT+ SL A
Sbjct: 230 ALR------DLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASA 278
>gi|347954498|gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
Length = 491
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 83/144 (57%), Gaps = 11/144 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ + EALV F +Q + +RP A + ++ C++L +L G VH ++++ + +
Sbjct: 175 KGFHEEALVWFREMQISG---VRPDYVAIIAALNACTNLGALSFGLWVHRYVMNQDFKNN 231
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + N ++++Y +CG +E AR V D+M +R V+ SWN++I G A+ NA+E++
Sbjct: 232 VRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVV------SWNSVIVGFAANGNAHESLVY 285
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F +M++ PD +T L AC+
Sbjct: 286 FRKMQEEGFKPDAVTFTGALTACS 309
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
V N +++ Y + G +++A + D+MP+R DL SW A+I G EA+ F
Sbjct: 132 VTWNTMIDGYMRSGQVDNAVKMFDKMPER------DLISWTAMINGFVKKGFHEEALVWF 185
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
EM+ + PD + + + L ACT
Sbjct: 186 REMQISGVRPDYVAIIAALNACT 208
>gi|357118286|ref|XP_003560887.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Brachypodium distachyon]
Length = 676
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 7/116 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ +++ C+SL L+LG ++H ++ PD N ++ MY + G+L DA + +M
Sbjct: 399 TFSSVLAACASLPMLRLGAQLH-QLIEKSFLPDTATSNALMTMYSRGGALTDAEAIFKQM 457
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
PQ+ DL SWNA+I G A EA+ LF +MR ++P +T SLL AC
Sbjct: 458 PQK------DLVSWNALIGGYEHHGCATEALQLFEDMRSARVMPTHITFISLLSAC 507
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
PD+V N I+ + + G +E AR D MP+R I SWN +I+G + + A+
Sbjct: 329 PDIVSWNLIIRGFTQKGDVEHARGFFDRMPERGTI------SWNTMISGYEQNGHYDGAI 382
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACTS 162
LF++M + PD T S+L AC S
Sbjct: 383 ELFTKMLEAGGTPDRHTFSSVLAACAS 409
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118
L R++ D + Q D V N +L Y + G + +A + DEMPQRNV ASW
Sbjct: 111 LAAARRLFDEM----PQRDAVTWNTLLGAYVRRGLMVEAEKLFDEMPQRNV------ASW 160
Query: 119 NAIIAGVASPSNANEAMSLFSEM 141
N ++ G S N+A+ +F M
Sbjct: 161 NTMVTGFFSAGQVNKALDMFDAM 183
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+VV N ++ Y + G + AR + +EMP + DL SWN +IAG S+ EA
Sbjct: 268 NVVSWNSMMTCYIRTGDVCSAREIFNEMPDK------DLVSWNTMIAGYTKVSDMEEAEK 321
Query: 137 LFSEMRDRELIPDGLTVRSL 156
LF EM D +++ L +R
Sbjct: 322 LFWEMPDPDIVSWNLIIRGF 341
Score = 40.8 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
I + D+V N ++ Y K +E+A + EMP PD+ SWN II G
Sbjct: 291 IFNEMPDKDLVSWNTMIAGYTKVSDMEEAEKLFWEMP------DPDIVSWNLIIRGFTQK 344
Query: 129 SNANEAMSLFSEMRDRELI 147
+ A F M +R I
Sbjct: 345 GDVEHARGFFDRMPERGTI 363
Score = 35.4 bits (80), Expect = 8.9, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 26 ALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
A A ++ + R+ P+ T+ L+S C + + G V D ++ S +++Y
Sbjct: 478 ATEALQLFEDMRSARVMPTHITFISLLSACGNAGLVSEGWMVFDTMIHEYSIA-ARIEHY 536
Query: 84 --ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN 130
++N+ G+ G L+DA V + MP +PD + W A + + N
Sbjct: 537 AALVNLIGRHGQLDDALEVINSMPI-----APDRSVWGAFLGACTAKKN 580
>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
Length = 795
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 76/129 (58%), Gaps = 13/129 (10%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKCGSLEDARVVS 101
P Y ++ C+S+++L+ G+ +H I +K + DV+L+N +L MY KCGSLEDA+ +
Sbjct: 121 PVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLF 180
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ M R+V +SWNA+IA A + EA+ L+ +M ++ P T S+L AC
Sbjct: 181 ERMSGRSV------SSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSAC- 230
Query: 162 SPSNVLYLD 170
SN+ LD
Sbjct: 231 --SNLGLLD 237
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 8/128 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ PS T+ ++S CS+L L GRK+H I S ++ D+ LQN +L MY +C L+DA
Sbjct: 216 VEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAA 275
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+ +P+R+V+ SW+A+IA A +EA+ +S+M+ + P+ T S+L
Sbjct: 276 KIFQRLPRRDVV------SWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLL 329
Query: 159 ACTSPSNV 166
AC S ++
Sbjct: 330 ACASVGDL 337
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
++N T Y+C+IS C+SL + R+ H I + D VL ++NMY + G
Sbjct: 413 MKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWG 472
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
+LE AR V D+M R+ + +W +IAG A A+ L+ EM P LT
Sbjct: 473 NLESARQVFDKMSSRDTL------AWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELT 526
Query: 153 VRSLLCACT 161
+L AC+
Sbjct: 527 FMVVLYACS 535
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+L++EA+ + +Q +RP+ T+A ++ C+S+ L+ GR VHD IL + + +
Sbjct: 300 DLFDEAIEFYSKMQLEG---VRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITL 356
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
V ++++Y GSL++AR + D+ IE+ D W +I G + + + L+
Sbjct: 357 VNGTALVDLYTSYGSLDEARSLFDQ------IENRDEGLWTVLIGGYSKQGHRTGVLELY 410
Query: 139 SEMRDRELIPDGLTVRS-LLCACTS 162
EM++ +P + S ++ AC S
Sbjct: 411 REMKNTTKVPATKIIYSCVISACAS 435
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 53 CSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIES 112
C L S+ R++HD I S + +V L N I+ YGKCGS+ AR D + ++N
Sbjct: 37 CQDLESV---RQIHDRI-SGAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDY-- 90
Query: 113 PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
SW +++ A + A+ L+ M +L P+ + ++L AC S
Sbjct: 91 ----SWGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACAS 133
>gi|297823163|ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325303|gb|EFH55723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 713
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 49/144 (34%), Positives = 80/144 (55%), Gaps = 8/144 (5%)
Query: 19 IQNLYNE-ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+QN NE AL+ + ++ P T A ++ CSSL +L+LG++VH H + +
Sbjct: 388 VQNSDNEEALILYRRMKTAGIIPNDP-TMASVLKACSSLATLELGKQVHGHTIKHGFGLE 446
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + + + MY KCGSLED +V P ++V+ SWNA+I+G++ +EA+ L
Sbjct: 447 VPIGSALSTMYTKCGSLEDGNLVFRRTPNKDVV------SWNAMISGLSHNGQGDEALEL 500
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F EM PD +T +++ AC+
Sbjct: 501 FEEMLAEGTEPDDVTFVNIISACS 524
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 8/140 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
E+L A + I+PS Y + ++ CS + L G+++H +L + +
Sbjct: 291 ESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKLGFERHLFATT 350
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY K G L DAR D + +R D+A W ++I+G S+ EA+ L+ M+
Sbjct: 351 ALVDMYAKAGCLADARKGFDCLQER------DVALWTSLISGYVQNSDNEEALILYRRMK 404
Query: 143 DRELIPDGLTVRSLLCACTS 162
+IP+ T+ S+L AC+S
Sbjct: 405 TAGIIPNDPTMASVLKACSS 424
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 54 SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESP 113
S R+L GR VH I+ + + N ++N Y KCG L A + N I
Sbjct: 27 SQHRNLVAGRAVHAQIIRTGTSTCTQHANVLVNFYAKCGQLAKAHSIF------NAIICK 80
Query: 114 DLASWNAIIAGVASP---SNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
D+ SWN++I G + S+++ M LF EMR ++++P+ T+ + A +S
Sbjct: 81 DVVSWNSLITGYSQNGGISSSHTVMQLFREMRAQDILPNAYTLAGIFKAESS 132
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 9/124 (7%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+ ++S+ ++ + LGR++H + + V L N ++ MY KC SL +A + D
Sbjct: 213 FTAVLSSLAATVYVGLGRQIHGITVKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSG 272
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165
RN I +W+A++ G + + EA+ LFS M + P T+ +L AC S+
Sbjct: 273 DRNSI------TWSAMVTGYSQNGESLEAIKLFSRMFSAGIKPSEYTIVGVLNAC---SD 323
Query: 166 VLYL 169
+ YL
Sbjct: 324 ICYL 327
>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 77/132 (58%), Gaps = 9/132 (6%)
Query: 30 FDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYG 89
FD+ NF T+ ++ C++L +++ GR++H+H++ + + DV + +++MY
Sbjct: 168 FDYGLVPDNF-----TFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYA 222
Query: 90 KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD 149
KCG + AR V D++ R+ + + SWNA+I G A +A EA+ LF EM +R PD
Sbjct: 223 KCGCVGSAREVFDKILVRDAVL---VVSWNAMITGYAMHGHATEALDLFEEM-NRVAKPD 278
Query: 150 GLTVRSLLCACT 161
+T +L AC+
Sbjct: 279 HITFVGVLSACS 290
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 6/123 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
S YA L+ +C + ++++ G+++H + + D V+ ++N+Y C SL AR++ D
Sbjct: 76 SNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDR 135
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
+P+ N+ WN +I G A A+ L+ +M D L+PD T +L AC +
Sbjct: 136 IPKHNIF------LWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAAL 189
Query: 164 SNV 166
S +
Sbjct: 190 SAI 192
>gi|302769798|ref|XP_002968318.1| hypothetical protein SELMODRAFT_599 [Selaginella moellendorffii]
gi|300163962|gb|EFJ30572.1| hypothetical protein SELMODRAFT_599 [Selaginella moellendorffii]
Length = 666
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 54/149 (36%), Positives = 78/149 (52%), Gaps = 18/149 (12%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQ 81
EA+ F +Q + RI P T+ ++S C +L+ G K+ + DVVL
Sbjct: 90 EAMELFQAMQEDG--RIEPDSVTFVAVVSACCDPSALEAGDKIFALVEERGLLDSDVVLG 147
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++NMY KCGSL+ A +V + M R+V+ SWNAII+ +A + AM F EM
Sbjct: 148 NALVNMYSKCGSLKSATMVFERMKIRDVV------SWNAIISALARHDRKDIAMQRFREM 201
Query: 142 -------RDRELIPDGLTVRSLLCACTSP 163
++ L+PDG T+ S L ACT P
Sbjct: 202 QLEGLSPKEEALLPDGFTLASALAACTGP 230
Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 44/121 (36%), Positives = 67/121 (55%), Gaps = 7/121 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++ + +C ++SL G+ +H ++ S + + N ++NMYGKCGSL AR V D M
Sbjct: 8 SFITALKSCVRIQSLAAGKFIHLLVIESGLLTQISVGNALVNMYGKCGSLALAREVFDGM 67
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR-DRELIPDGLTVRSLLCACTSP 163
R+VI SWNA+I A + EAM LF M+ D + PD +T +++ AC P
Sbjct: 68 DHRDVI------SWNAVITAYAQAGHCKEAMELFQAMQEDGRIEPDSVTFVAVVSACCDP 121
Query: 164 S 164
S
Sbjct: 122 S 122
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++ C+ L+ GR++H ++ + ++V+ N +++MY CG+L+DA +M
Sbjct: 219 TLASALAACTGPEMLEEGREIHALVIERGCESELVVGNALVSMYANCGTLQDALECFQKM 278
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
QRNV+ SWNA+IA + EA +F +M+ + P+ +T + L AC++P+
Sbjct: 279 AQRNVV------SWNAMIAAYVHHNCDKEAFRIFHQMQLEGVQPNSVTFVTFLSACSTPA 332
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C+ L GR++H+ I + ++ + N +++M+GKC SL AR +
Sbjct: 452 TWTTMLGACAGEALLAEGRRIHELIGERGADSELFVGNALVDMFGKCASLGGARQAFER- 510
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I D +SWN ++A +A +A EA+ F +M+ + P +T + AC+
Sbjct: 511 -----IRGKDASSWNVLVAALAQNGDAEEALKQFLQMQREGIKPTDVTFIVVFWACS 562
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +S CS+ + + G ++H + S + D + N +++M+ KC SL+DA +
Sbjct: 320 TFVTFLSACSTPAAFEDGLQLHSIVRESGLEADASVGNAVVHMFAKCWSLDDALAAFQRI 379
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
PQ+N L SWN ++ EA LF M +R++I
Sbjct: 380 PQKN------LGSWNGLLGAYIHVGRLAEARKLFEVMEERDVI 416
>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 708
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++ CS+L + GR++H + +V + + + MY KCG+LE+ +V M
Sbjct: 416 TMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRM 475
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P+R++I SWNA+I+G++ EA+ LF EMR ++ PD +T ++L AC+
Sbjct: 476 PERDII------SWNAMISGLSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSACS 526
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 68/123 (55%), Gaps = 8/123 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I PS T +++ CS +++ G++VH+++L + + + +++MY K G EDAR
Sbjct: 309 INPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDAR 368
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
N ++ PDL W ++IAG +A+SL+ M+ ++P+ LT+ S+L
Sbjct: 369 ------KGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLK 422
Query: 159 ACT 161
AC+
Sbjct: 423 ACS 425
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ + + S+L S+ G++ H + DV + + +LNMY K G L +AR V D M
Sbjct: 113 TFSGIFTAASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRM 172
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P+RN + +W +I+G A A EA +F MR E + S+L A P
Sbjct: 173 PERNEV------TWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPE 226
Query: 165 NV 166
V
Sbjct: 227 FV 228
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 9/115 (7%)
Query: 57 RSLQLGRKVHDHILS-SKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDL 115
+SLQ GR +H I+ + S + L N ++N Y KC L A++V D + ++VI
Sbjct: 21 KSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKDVI----- 75
Query: 116 ASWNAIIAGVA--SPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
SWN +I G + P+ ++ M LF MR ++P+ T + A ++ S++ +
Sbjct: 76 -SWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFF 129
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 11/157 (7%)
Query: 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILS 71
T + IQ L EA F+ ++ + + ++S + + G+++H L+
Sbjct: 182 TMISGYAIQRLAGEAFEVFELMRREEE-DVNEFAFTSVLSALAVPEFVDSGKQIH--CLA 238
Query: 72 SKSQPDVVLQ--NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPS 129
K+ V L N ++ MY KCGSL+D+ V + +N I +W+A+I G A
Sbjct: 239 VKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSI------TWSAMITGYAQSG 292
Query: 130 NANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
++++A+ LFS M + P T+ +L AC+ V
Sbjct: 293 DSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAV 329
>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Glycine max]
Length = 673
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 9/152 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+LY++AL+ F + + F TY C++ CS +L++G ++H + ++ +
Sbjct: 112 HLYDDALLVFRDMVSG-GFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFV 170
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N ++ +YGKCG L +AR V DEM +S D+ SWN+++AG A ++A+ + E
Sbjct: 171 GNGLIALYGKCGCLPEARCVLDEM------QSKDVVSWNSMVAGYAQNMQFDDALDICRE 224
Query: 141 MRDRELIPDGLTVRSLLCACTSPS--NVLYLD 170
M PD T+ SLL A T+ S NVLY++
Sbjct: 225 MDGVRQKPDACTMASLLPAVTNTSSENVLYVE 256
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 8/124 (6%)
Query: 40 RIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
+ P C ++ C L +L LGR++H+++ K P+++L+N +++MY +CG LEDA
Sbjct: 297 EVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDA 356
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+ V D M R D+ASW ++I+ A++LF+EM++ PD + ++L
Sbjct: 357 KRVFDRMKFR------DVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAIL 410
Query: 158 CACT 161
AC+
Sbjct: 411 SACS 414
>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
Length = 1008
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 86/160 (53%), Gaps = 8/160 (5%)
Query: 3 RNLKTQLRFTFYNSQPIQN-LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQL 61
R+ K+ + +T + +QN + EAL F ++ R +T++ +I SSL + L
Sbjct: 596 RSEKSAISWTALITGYVQNGQHEEALQLFSDMRR-AGLRPDRATFSSIIKASSSLAMIGL 654
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
GR++H +++ S + V + +++MY KCG L++A DEMP+RN I SWNA+
Sbjct: 655 GRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSI------SWNAV 708
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I+ A A A+ +F M PD +T S+L AC+
Sbjct: 709 ISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACS 748
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
YA ++S SL + +G+++H ++ + +L N +++MY KCG L+ A+
Sbjct: 538 YATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRS 597
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+++ I SW A+I G EA+ LFS+MR L PD T S++ A +S
Sbjct: 598 EKSAI------SWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSS 648
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 72 SKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNA 131
S S +V + N +L+ Y KC L+D R + DEMP+R D S+N IIA A A
Sbjct: 463 STSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPER------DNVSYNVIIAAYAWNQCA 516
Query: 132 NEAMSLFSEMR----DRELIP 148
+ LF EM+ DR+++P
Sbjct: 517 ATVLRLFREMQKLGFDRQVLP 537
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 61/150 (40%), Gaps = 21/150 (14%)
Query: 17 QPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
QP + FD L N +R L+S+ L R + D +
Sbjct: 240 QPSSQAAPAGVTGFDVLTYRLNLGLR-----SLLSSGH----LHRARAMFDQM----PHK 286
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
++ N IL+ Y G L A+ + P RN +W ++ A+ ++A+S
Sbjct: 287 NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNA------TTWTIMMRAHAAAGRTSDALS 340
Query: 137 LFSEMRDRELIPDGLTVRSL--LCACTSPS 164
LF M +IPD +TV ++ L CT PS
Sbjct: 341 LFRAMLGEGVIPDRVTVTTVLNLPGCTVPS 370
>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 69/121 (57%), Gaps = 8/121 (6%)
Query: 42 RPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP Y +I C L++LQ+GR +H + D + +++MYGKC +EDAR
Sbjct: 833 RPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARF 892
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ D+M +R DL +W +I G A NANE++ LF +MR+ ++PD + + +++ A
Sbjct: 893 LFDKMXER------DLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFA 946
Query: 160 C 160
C
Sbjct: 947 C 947
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 76/140 (54%), Gaps = 11/140 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
NE+LV F+ ++ + P A ++ C+ L ++ R + D+I K Q DV+L
Sbjct: 243 NESLVLFEKMREEG---VVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILG 299
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+++MY KCG +E AR + D M ++NVI SW+A+IA +A+ LF M
Sbjct: 300 TAMIDMYAKCGCVESAREIFDRMEEKNVI------SWSAMIAAYGYHGQGRKALDLFPMM 353
Query: 142 RDRELIPDGLTVRSLLCACT 161
++PD +T+ SLL AC+
Sbjct: 354 LSSGMLPDKITLASLLYACS 373
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 76/140 (54%), Gaps = 11/140 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
NE+LV FD ++ + P A ++ C+ L ++ R + D+I K Q DV+L
Sbjct: 919 NESLVLFDKMREEG---VVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILG 975
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+++M+ KCG +E AR + D M ++NVI SW+A+IA +A+ LF M
Sbjct: 976 TAMIDMHAKCGCVESAREIFDRMEEKNVI------SWSAMIAAYGYHGQGRKALDLFPMM 1029
Query: 142 RDRELIPDGLTVRSLLCACT 161
++P+ +T+ SLL AC+
Sbjct: 1030 LRSGILPNKITLVSLLYACS 1049
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 8/121 (6%)
Query: 42 RPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP Y +I C L++LQ+GR +H + D + +++MY KC +EDAR
Sbjct: 157 RPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARF 216
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ D+M +R DL +W +I G A ANE++ LF +MR+ ++PD + + +++ A
Sbjct: 217 LFDKMQER------DLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFA 270
Query: 160 C 160
C
Sbjct: 271 C 271
Score = 42.7 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 22/164 (13%)
Query: 5 LKTQLRFTFYNSQPIQNLYN--EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLG 62
++TQ R Q NL+N E F FLQ R+ P Y + C R+L
Sbjct: 33 IETQFR------QTSLNLHNREEESSKFHFLQ-----RLNPKFYISALVNC---RNLTQV 78
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
R+VH ++V+ N ++ Y +L+DA + D M R D SW+ ++
Sbjct: 79 RQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVR------DSVSWSVMV 132
Query: 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
G A + F E+ PD T+ ++ AC N+
Sbjct: 133 GGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNL 176
>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
Length = 810
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 86/160 (53%), Gaps = 8/160 (5%)
Query: 3 RNLKTQLRFTFYNSQPIQN-LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQL 61
R+ K+ + +T + +QN + EAL F ++ R +T++ +I SSL + L
Sbjct: 398 RSEKSAISWTALITGYVQNGQHEEALQLFSDMRR-AGLRPDRATFSSIIKASSSLAMIGL 456
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
GR++H +++ S + V + +++MY KCG L++A DEMP+RN I SWNA+
Sbjct: 457 GRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSI------SWNAV 510
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I+ A A A+ +F M PD +T S+L AC+
Sbjct: 511 ISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACS 550
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 19/137 (13%)
Query: 20 QNLYNEALVAFDFLQNN----TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQ 75
+ L+ +AL F ++ T+F T++ +++ + + L LG +VH +L S S
Sbjct: 214 EGLHTQALQLFAAMRRAGIPATHF-----TFSSILTVAAGMAHLLLGHQVHALVLRSTSV 268
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
+V + N +L+ Y KC L+D R + DEMP+R D S+N IIA A A +
Sbjct: 269 LNVFVNNSLLDFYSKCDCLDDMRRLFDEMPER------DNVSYNVIIAAYAWNQCAATVL 322
Query: 136 SLFSEMR----DRELIP 148
LF EM+ DR+++P
Sbjct: 323 RLFREMQKLGFDRQVLP 339
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
YA ++S SL + +G+++H ++ + +L N +++MY KCG L+ A+
Sbjct: 340 YATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRS 399
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+++ I SW A+I G EA+ LFS+MR L PD T S++ A +S
Sbjct: 400 EKSAI------SWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSS 450
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N IL+ Y G L A+ + P RN +W ++ A+ ++A+SLF M
Sbjct: 78 NLILSAYSSSGDLPAAQHLFLSSPHRNA------TTWTIMMRAHAAAGRTSDALSLFRAM 131
Query: 142 RDRELIPDGLTVRSL--LCACTSPS 164
+IPD +TV ++ L CT PS
Sbjct: 132 LGEGVIPDRVTVTTVLNLPGCTVPS 156
>gi|414875841|tpg|DAA52972.1| TPA: hypothetical protein ZEAMMB73_038558 [Zea mays]
Length = 641
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++S C+ L +L+LG++VH H + + ++QN ++N YGKCG + AR V D M
Sbjct: 350 TLATVLSACTQLLALRLGQEVHGHTIKAALDRHSLVQNGLVNTYGKCGKVATARKVFDGM 409
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
R DL SWN++I + +EA+++F ++ + PDG+T ++L AC+
Sbjct: 410 KSR------DLISWNSMIGSYGAHGMCDEALAMFQDLTRALIEPDGVTFVAVLSACSHTG 463
Query: 165 NV 166
V
Sbjct: 464 RV 465
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 50/88 (56%)
Query: 74 SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
++ + V N ++ Y G A V +M Q + +P++ SW+A+I G AS + +
Sbjct: 272 AKKNAVTWNALITSYAAAGLCGKALGVLAQMEQCGGMVAPNVVSWSAVIGGFASSGDMEQ 331
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACT 161
A+ L +M+ + L+P+ +T+ ++L ACT
Sbjct: 332 ALQLCRQMQQQWLLPNAVTLATVLSACT 359
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 58 SLQLGRKVHDHIL--SSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDL 115
S +L VH H L + PDV Q +L Y + G +AR V D +P R
Sbjct: 84 SWRLAAVVHGHALHLGLHTHPDVAGQ--VLAAYARLGRAAEARCVFDALPLRR-----ST 136
Query: 116 ASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
SWN +I+ ++ + + A F+ M PD +T +LL A
Sbjct: 137 LSWNTLISAYSAGCDPDAAWVAFARMVAAGARPDAVTWTALLSA 180
Score = 40.0 bits (92), Expect = 0.30, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSS-KSQPDVVL 80
+EAL F Q+ T I P T+ ++S CS + GR++ D ++ K P +
Sbjct: 431 DEALAMF---QDLTRALIEPDGVTFVAVLSACSHTGRVAEGRRLFDQMVREHKISPTMEH 487
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
++++ G+ G L A + D MP + PDL W A++
Sbjct: 488 YTCMVDLLGRAGLLRGACELIDTMPMK-----PDLCVWGALL 524
>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 74/130 (56%), Gaps = 7/130 (5%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
+F ST ++ C+ L L+LGR+VH H+L K D++L N +L+MY KCGSLED
Sbjct: 209 ADFVADQSTLTSVLRACTGLALLELGRQVHVHVL--KYDQDLILNNALLDMYCKCGSLED 266
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
A ++ M + D+ SW+ +IAG+A + +A+ LF M+ + P+ +T+ +
Sbjct: 267 ANLLFTRM-----MTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGV 321
Query: 157 LCACTSPSNV 166
L AC+ V
Sbjct: 322 LFACSHAGLV 331
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 11/136 (8%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A DFL +RP+ TY+ ++ C L +L R++H IL + DV +++ +++
Sbjct: 101 ALDFLILMLREGVRPNMYTYSSVLRACDGLLNL---RQLHGSILKVGLESDVFVRSALID 157
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
Y K G DA V +EM + DL WN+II G A S+ +E + L+ M+ +
Sbjct: 158 TYSKLGEQHDALNVFNEMI------TGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADF 211
Query: 147 IPDGLTVRSLLCACTS 162
+ D T+ S+L ACT
Sbjct: 212 VADQSTLTSVLRACTG 227
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY+ LI C ++Q R VH+H+ S+ +P L N ++NMY K G L++AR + DEM
Sbjct: 18 TYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEM 77
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P RNV+ SW +I+ ++ + ++A+ M + P+ T S+L AC
Sbjct: 78 PDRNVV------SWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLL 131
Query: 165 NV 166
N+
Sbjct: 132 NL 133
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 79/144 (54%), Gaps = 12/144 (8%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSS-KSQPD 77
LY+ A+ AF + R+R T ++S CS+L L LG+KVH +I + D
Sbjct: 191 GLYSRAVEAF---MEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKAD 247
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + N +L+MY KC L A V DEMP +NV+ +WNA+I+G+A EA+
Sbjct: 248 VFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVV------TWNAMISGLAYQGRYREALDT 301
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F M+D+ + PD +T+ +L +C
Sbjct: 302 FRMMQDKGVKPDEVTLVGVLNSCA 325
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 81/149 (54%), Gaps = 11/149 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
Q Y EAL F +Q+ ++P T ++++C++L L++G+ VH ++ + D
Sbjct: 292 QGRYREALDTFRMMQDKG---VKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILAD 348
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ N +L+MY KCGS+++A V + M +R D+ S+ A+I G+A AN A +
Sbjct: 349 KFVGNALLDMYAKCGSIDEAFRVFESMKRR------DVYSYTAMIFGLALHGEANWAFQV 402
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNV 166
FSEM + P+ +T LL AC+ V
Sbjct: 403 FSEMFRVGIEPNEVTFLGLLMACSHGGLV 431
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 31 DFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDH-ILSSKSQPDVVLQNYILNM 87
+FL + P + ++ + ++ ++ G+++H I + +V + N ++ +
Sbjct: 96 EFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRL 155
Query: 88 YGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
Y CGS+ D + V DE P R DL SW +I + A+ F EM D L
Sbjct: 156 YSVCGSIHDVQKVFDECPHR------DLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLR 209
Query: 148 PDGLTVRSLLCACTSPSNV 166
DG T+ +L AC++ ++
Sbjct: 210 ADGRTLVVVLSACSNLGDL 228
>gi|225441828|ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 662
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
I P I C L+SLQ GR VH+ + DV++ N +L MY CGS++DAR V
Sbjct: 192 IDPLALVTAIVACGMLKSLQEGRYVHEIAKKCGLEADVLVSNSLLKMYIDCGSIKDARAV 251
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
D MP ++VI SW I G NE + LF +M + PD L + S+L AC
Sbjct: 252 FDRMPSKDVI------SWTEIFRGYVKNGGFNEGLKLFRQMSMEGVKPDSLAISSILPAC 305
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 12/144 (8%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+NE L F + ++P + A ++ C + + G+++H ++L + +V +
Sbjct: 276 FNEGLKLFRQMSMEG---VKPDSLAISSILPACGRGAAHKQGKEIHAYLLRNGIDLNVTV 332
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
QN +L+MY K G +E A + M R+ I SW +I G + + LF +
Sbjct: 333 QNAVLDMYVKSGFIESAAKIFAGMKDRDAI------SWTVMILGYSLHGQGELGVDLFRK 386
Query: 141 MRDRELIP-DGLTVRSLLCACTSP 163
M + D + + L ACT+
Sbjct: 387 MEKNSSVEIDQIAYAAALHACTTA 410
>gi|255539985|ref|XP_002511057.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550172|gb|EEF51659.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 543
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 83/142 (58%), Gaps = 13/142 (9%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLI--STCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+EAL FD ++++ P++ LI + C+ L S LG K HD IL SK + D+ L+
Sbjct: 324 SEALFLFDKMRDSG---CEPNSVTALIMVAACAYLGSRHLGGKFHDFILDSKMKIDMNLR 380
Query: 82 NYILNMYGKCGSLEDA-RVVSDEMP-QRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
N +++MY KCG L+ A + +D P +RNV +SWN +I+G + EA+ L+S
Sbjct: 381 NALMDMYAKCGDLKTAVEMFNDVHPSERNV------SSWNVLISGYGMHGHGKEALRLYS 434
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
M++ + P+ +T S+L AC+
Sbjct: 435 RMQEESVEPNHITFTSILSACS 456
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 7/138 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+EAL+ +Q + F T + S L + + VH + + ++ + N
Sbjct: 223 DEALILLRKMQQHGLFP-DEVTMVSVASAIGQLWDAKWAQSVHAYAIRRSFLKEIFVANS 281
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
IL M+ KCG++E + ++ D M +RNVI SWN++++G A+EA+ LF +MRD
Sbjct: 282 ILAMHTKCGNMEKSCLIFDMMDERNVI------SWNSMLSGYTQNGQASEALFLFDKMRD 335
Query: 144 RELIPDGLTVRSLLCACT 161
P+ +T ++ AC
Sbjct: 336 SGCEPNSVTALIMVAACA 353
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ + C+S L G+ H + + DV ++ +++MY KCG D R + DEM
Sbjct: 142 TFPFIFKACASNSLLLQGKVAHGDAVKADFDSDVYVKAALVDMYAKCGQFCDGRKIFDEM 201
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
P + DL W A+I +EA+ L +M+ L PD +T+ S+ A
Sbjct: 202 PVK------DLVCWTAMITAYEQGEKPDEALILLRKMQQHGLFPDEVTMVSVASA 250
>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 933
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 80/138 (57%), Gaps = 11/138 (7%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
EAL F +Q+ ++P + C L++ C++L + + G+++H HIL D+ N
Sbjct: 544 EALKLFLEMQD---MELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGN 600
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++NMY KCGS++DA E+ +R ++ SW+A+I G+A + +A+ LF++M
Sbjct: 601 SLVNMYAKCGSIDDAGRAFSELTERGIV------SWSAMIGGLAQHGHGRQALQLFNQML 654
Query: 143 DRELIPDGLTVRSLLCAC 160
+ P+ +T+ S+L AC
Sbjct: 655 KEGVSPNHITLVSVLGAC 672
Score = 76.3 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ ++ CS ++ L++G++VH ++ S + DV + N ++ MY KC D++ + DE+
Sbjct: 159 TFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEI 218
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P+RNV+ SWNA+ + EA+ LF EM + P+ ++ S++ ACT
Sbjct: 219 PERNVV------SWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT 269
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 6/129 (4%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
L + NF +Y+ L+S C + +SL+ G ++H HI S D ++N+++N+Y KC
Sbjct: 46 LIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCR 105
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
+ AR + DE + PDL SW+A+I+G A A+ F EM + + T
Sbjct: 106 NFGYARKLVDESSE------PDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFT 159
Query: 153 VRSLLCACT 161
S+L AC+
Sbjct: 160 FSSVLKACS 168
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Query: 41 IRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I+P+ ++ +++ C+ LR G+ +H +++ D N +++MY K G L DA
Sbjct: 254 IKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAI 313
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V +++ Q PD+ SWNA+IAG + +A+ L +M+ + P+ T+ S L
Sbjct: 314 SVFEKIKQ------PDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALK 367
Query: 159 AC 160
AC
Sbjct: 368 AC 369
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T + ++ + + L+ + + R+VH + S D+ + N +++ YGKC +EDA + +E
Sbjct: 461 TTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEE 520
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
DL S+ ++I A EA+ LF EM+D EL PD SLL AC +
Sbjct: 521 ------CTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANL 574
Query: 164 S 164
S
Sbjct: 575 S 575
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 63/113 (55%), Gaps = 6/113 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + + C+ + +LGR++H ++ + D+ + +++MY KC LEDAR+ + +
Sbjct: 361 TLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLL 420
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
P++ DL +WNAII+G + EA+SLF EM + + T+ ++L
Sbjct: 421 PEK------DLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTIL 467
>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1028
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 6/127 (4%)
Query: 35 NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSL 94
++ + I T+ L+STC+ L++G + H I+ K ++ + N +++MY KCG+L
Sbjct: 420 KSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGAL 479
Query: 95 EDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVR 154
EDAR + + M R D SWN II G N +EA LF M ++ DG +
Sbjct: 480 EDARQIFEHMCDR------DNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLA 533
Query: 155 SLLCACT 161
S L ACT
Sbjct: 534 STLKACT 540
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 84/162 (51%), Gaps = 7/162 (4%)
Query: 6 KTQLRFTFYNSQPIQN-LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRK 64
K+ + +T S QN Y EAL + ++++ +T+ ++ CS L SL+ GR
Sbjct: 695 KSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALP-DQATFVTVLRVCSVLSSLREGRA 753
Query: 65 VHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124
+H I D + N +++MY KCG ++ + V DEM +R+ ++ SWN++I G
Sbjct: 754 IHSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRS-----NVVSWNSLING 808
Query: 125 VASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
A A +A+ +F MR ++PD +T +L AC+ V
Sbjct: 809 YAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKV 850
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 78/143 (54%), Gaps = 15/143 (10%)
Query: 29 AFDFLQNNTNFRIRPSTYACLIST---CSSLRSLQLGRKVHDHILSSKSQPDVVLQ--NY 83
AFD + I S ACL ST C+++ L G++VH LS K D VL +
Sbjct: 513 AFDLFMRMNSCGI-VSDGACLASTLKACTNVHGLYQGKQVH--CLSVKCGLDRVLHTGSS 569
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+++MY KCG +EDAR V MP+ +V+ S NA+IAG S +N EA+ LF EM
Sbjct: 570 LIDMYSKCGIIEDARKVFSSMPEWSVV------SMNALIAGY-SQNNLEEAVVLFQEMLT 622
Query: 144 RELIPDGLTVRSLLCACTSPSNV 166
+ + P +T +++ AC P ++
Sbjct: 623 KGVNPSEITFATIVEACHKPESL 645
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 27 LVAFDFLQN--NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
+VA ++ N ++ + ST ++S + +L LG VH + ++ + + +
Sbjct: 309 IVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSL 368
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MY KC +E A V + + +RN + WNA+I G A +++ M LF +M+
Sbjct: 369 VSMYSKCEKMEAAAKVFEALEERNDV------LWNAMIRGYAHNGESHKVMELFMDMKSS 422
Query: 145 ELIPDGLTVRSLLCACT 161
D T SLL C
Sbjct: 423 GYNIDDFTFTSLLSTCA 439
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ ++ST + +++ GR++H ++ + + +++MY KC L DA+ V D
Sbjct: 162 TFSIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRLGDAQRVFDG- 220
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
I P+ W + +G EA+ +F MR PD L +++
Sbjct: 221 -----IVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRPDHLAFVTVI 268
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 65 VHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124
V + + +PD + ++N Y G L+DAR++ EMP SPD+ +WN +I+G
Sbjct: 248 VFERMRGEGHRPDHLAFVTVINTYISLGKLKDARLLFGEMP------SPDVVAWNVMISG 301
Query: 125 VASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
A+ F MR + T+ S+L A +N+
Sbjct: 302 HGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANL 343
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 13/151 (8%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILS-SKSQP 76
QN EA+V F Q + PS T+A ++ C SL LG + H I+ S
Sbjct: 607 QNNLEEAVVLF---QEMLTKGVNPSEITFATIVEACHKPESLTLGTQFHGQIIKWGFSSE 663
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPD-LASWNAIIAGVASPSNANEAM 135
L +L +Y + +A + E+ SP + W +++G + EA+
Sbjct: 664 GEYLGISLLGLYMNSRRMAEACALFSELS------SPKSIVLWTGMMSGHSQNGFYEEAL 717
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+ EMR +PD T ++L C+ S++
Sbjct: 718 KFYKEMRHDGALPDQATFVTVLRVCSVLSSL 748
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
+L++G+ VH L + L N I+++Y KC + A Q N +E D+ +
Sbjct: 75 ALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAE------KQFNSLE-KDVTA 127
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
WN++++ +S + + F + + + P+ T +L +NV +
Sbjct: 128 WNSMLSMYSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEF 178
>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
Length = 906
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 80/138 (57%), Gaps = 11/138 (7%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
EAL F +Q+ ++P + C L++ C++L + + G+++H HIL D+ N
Sbjct: 517 EALKLFLEMQD---MELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGN 573
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++NMY KCGS++DA E+ +R ++ SW+A+I G+A + +A+ LF++M
Sbjct: 574 SLVNMYAKCGSIDDAGRAFSELTERGIV------SWSAMIGGLAQHGHGRQALQLFNQML 627
Query: 143 DRELIPDGLTVRSLLCAC 160
+ P+ +T+ S+L AC
Sbjct: 628 KEGVSPNHITLVSVLGAC 645
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ ++ CS ++ L++G++VH ++ S + DV + N ++ MY KC D++ + DE+
Sbjct: 159 TFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEI 218
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P+RNV+ SWNA+ + EA+ LF EM + P+ ++ S++ ACT
Sbjct: 219 PERNVV------SWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT 269
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 6/129 (4%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
L + NF +Y+ L+S C + +SL+ G ++H HI S D ++N+++N+Y KC
Sbjct: 46 LIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCR 105
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
AR + DE + PDL SW+A+I+G A A+ F EM + + T
Sbjct: 106 XFGYARKLVDESSE------PDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFT 159
Query: 153 VRSLLCACT 161
S+L AC+
Sbjct: 160 FSSVLKACS 168
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T + ++ + + L+ + + R+VH + S D+ + N +++ YGKC +EDA + +E
Sbjct: 434 TTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEE 493
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
DL S+ ++I A EA+ LF EM+D EL PD SLL AC +
Sbjct: 494 ------CTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANL 547
Query: 164 S 164
S
Sbjct: 548 S 548
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
Q+ R++H ++ + D+ + +++MY KC LEDAR+ + +P++ DL +WN
Sbjct: 349 QMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEK------DLIAWN 402
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
AII+G + EA+SLF EM + + T+ ++L
Sbjct: 403 AIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTIL 440
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 9/108 (8%)
Query: 41 IRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I+P+ ++ +++ C+ LR G+ +H +++ D N +++MY K G L DA
Sbjct: 254 IKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAI 313
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
V +++ Q PD+ SWNA+IAG + +A+ L +M+ R+L
Sbjct: 314 SVFEKIKQ------PDIVSWNAVIAGCVLHEHHEQALELLGQMK-RQL 354
>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Vitis vinifera]
Length = 629
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 14/129 (10%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSS------KSQPDVVLQNYILNMYGKCG 92
I+P T ++ CS L +L GR++H +++ S K DV+L+N +++MY KCG
Sbjct: 334 IQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCG 393
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
S+ DA +V + M + D+ASWN +I G NEA+ +FS M + +L PD +T
Sbjct: 394 SMRDAHLVFERMSNK------DVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVT 447
Query: 153 VRSLLCACT 161
+L AC+
Sbjct: 448 FVGVLSACS 456
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 11/131 (8%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
F+F Q N + P T+ C I C L L++ +K+H + + DV + + ++N
Sbjct: 123 GFEFYQKMRNEGVIPDKFTFPCAIKAC--LDVLEI-KKIHGLLFKFGLELDVFIGSALVN 179
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
Y K G +E A+V +E+P R+V+ WNA++ G A + F M D +
Sbjct: 180 CYLKFGLMEHAQVAFEELPIRDVV------LWNAMVNGYAQIGQFEMVLETFRRMNDESV 233
Query: 147 IPDGLTVRSLL 157
+P TV +L
Sbjct: 234 VPSRFTVTGVL 244
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S + + L GR +H + V + N +++MYGKC +EDA + + M
Sbjct: 239 TVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMM 298
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
++ D+ SWN+I++ + + + L M + PD +TV ++L AC+ +
Sbjct: 299 REK------DIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLA 352
Query: 165 NVLY 168
+++
Sbjct: 353 ALMH 356
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 48 CLISTCSSL--RSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA-RVVSDEM 104
C+ S +S ++L G+++H ++L + + ++NMY KC + A + SD
Sbjct: 40 CIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPT 99
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ NV ++NAII+G + E + +MR+ +IPD T + AC
Sbjct: 100 HEINVF------AFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKAC 149
>gi|358248494|ref|NP_001239891.1| uncharacterized protein LOC100783921 [Glycine max]
gi|255636013|gb|ACU18351.1| unknown [Glycine max]
Length = 449
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
Y L++ C RSL+ G++VH+ + S + DV L N ++ MY KCGS+++AR V D+M
Sbjct: 104 VYLALLNLCEHTRSLESGKRVHEILRRSAFRGDVELSNRLIGMYCKCGSVKNARRVFDQM 163
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
RN +A+W+ +I G S + + +F +M+ EL PDG T +L AC+
Sbjct: 164 LDRN------MATWHLMIGGYTSNGLGCDGLLVFQQMKQAELPPDGETFELVLAACSQAE 217
Query: 165 NV 166
V
Sbjct: 218 AV 219
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 9/148 (6%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS-KSQPDVV 79
+LY EAL F+ + +N + T+ ++ C+ L +L LG+ VH +I + ++ +
Sbjct: 343 SLYEEALALFEVMLR-SNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNAS 401
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
L +++MY KCG +E A V M RN LASWNA+++G A +A A++LFS
Sbjct: 402 LWTSLIDMYAKCGCIEAAERVFRSMHSRN------LASWNAMLSGFAMHGHAERALALFS 455
Query: 140 EMRDRELI-PDGLTVRSLLCACTSPSNV 166
EM ++ L PD +T +L ACT V
Sbjct: 456 EMVNKGLFRPDDITFVGVLSACTQAGLV 483
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 7/139 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ EA+V F +Q N ST ++S C RS +LG+ + + + ++ L N
Sbjct: 244 FEEAIVCFYEMQE-ANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTN 302
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG + AR + D + +++VI SWN +I G + S EA++LF M
Sbjct: 303 ALIDMYCKCGETDIARELFDGIEEKDVI------SWNTMIGGYSYLSLYEEALALFEVML 356
Query: 143 DRELIPDGLTVRSLLCACT 161
+ P+ +T +L AC
Sbjct: 357 RSNVKPNDVTFLGILHACA 375
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 69/149 (46%), Gaps = 27/149 (18%)
Query: 39 FRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
+ ++P+ T+ L +C+ ++ G+++H H L + + +++MY G ++
Sbjct: 125 YGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDF 184
Query: 97 ARVVSDEMPQRNVI-----------------------ESP--DLASWNAIIAGVASPSNA 131
AR+V D+ R+ + E P D+ SWNA+I+G
Sbjct: 185 ARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRF 244
Query: 132 NEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
EA+ F EM++ ++P+ T+ +L AC
Sbjct: 245 EEAIVCFYEMQEANVLPNKSTMVVVLSAC 273
>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
Length = 652
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ CS L +L GRK+H + D+V+ N ++N YG+CG+L DA++V D M
Sbjct: 282 TFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGM 341
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+R+VI SW+++I+ A +EAM L+ M +PD + S+L AC++
Sbjct: 342 RRRDVI------SWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSN 393
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+L++Y + G L +A+ V D MP+ + L SW A+++ A + EA +LF M++
Sbjct: 29 MLSIYARSGDLSNAKGVFDRMPRWS------LGSWTALLSAFALSGHHEEAKTLFDTMQE 82
Query: 144 RELI 147
R+LI
Sbjct: 83 RDLI 86
Score = 39.3 bits (90), Expect = 0.55, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+ + + D++ +L + ++EDA+ D+MP+R DL +W A++A A
Sbjct: 76 LFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPER------DLVAWTAMLAANAER 129
Query: 129 SNANEAMSLFSEMRDREL 146
A F +M +R L
Sbjct: 130 GQMENARETFDQMPERNL 147
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+L+ YG+ G ++ A V D MP+ N L +W A++ G + + A F M +
Sbjct: 153 LLSAYGRSGDVKAAGRVFDSMPEWN------LVAWTAMLTGYSLSGDVVRAKRAFDSMPE 206
Query: 144 RELI 147
R+LI
Sbjct: 207 RDLI 210
Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 70 LSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPS 129
S + D++ +L+ Y G L R + MP+R DL SW ++A +
Sbjct: 201 FDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPER------DLISWATMVAALVEND 254
Query: 130 NANEAMSLFSEMR-----DRELIPDGLTVRSLLCACT 161
E+ LF M + + P+ +T +LL AC+
Sbjct: 255 LLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACS 291
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 6/146 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N EAL F + +N R T +IS C+ L L+ GR VHD+I ++ V L
Sbjct: 260 NRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSL 319
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++M+ KCG ++ A+ + D M + DL SWN+++ G A EA++ F
Sbjct: 320 NNSLIDMFSKCGDIDAAKRIFDSMSYK------DLISWNSMVNGFALHGLGREALAQFRL 373
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M+ +L PD +T +L AC+ V
Sbjct: 374 MQTTDLQPDEITFIGVLTACSHAGLV 399
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 79/144 (54%), Gaps = 8/144 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
NEAL+ + ++ + F T A L+S C+ L+ L +G K+H HI + VL +
Sbjct: 162 NEALLLYKKMEED-GFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSA 220
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++NMY KCG L+ AR V D++ + D+ +W+A+I G + + EA+ LF E+
Sbjct: 221 LVNMYAKCGDLKTARQVFDKLSDK------DVYAWSALIFGYVKNNRSTEALQLFREVAG 274
Query: 144 RE-LIPDGLTVRSLLCACTSPSNV 166
+ P+ +T+ +++ AC ++
Sbjct: 275 GSNMRPNEVTILAVISACAQLGDL 298
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ C+ L ++G+ +H ++ D+ ++ +LNMY CG L+ AR + + M
Sbjct: 81 TFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERM 140
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
RN + W ++I+G NEA+ L+ +M + PD +T+ +L+ AC
Sbjct: 141 GHRNKV------VWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACA 191
>gi|255552163|ref|XP_002517126.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543761|gb|EEF45289.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 463
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 9/128 (7%)
Query: 41 IRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I P+ Y + +IS C+ L L+LGR H + + + D+ + + +++MYGKCG +ED+
Sbjct: 306 IEPTDYMVSSVISACAGLAGLELGRSFHALAVKACLEGDIFVGSALVDMYGKCGGIEDSE 365
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
EM +RN L +WNA+I G A +A A+ LF EM E++P+ +T+ +L
Sbjct: 366 QAFHEMSERN------LVTWNALIGGYAHQGHAEMAVRLFKEM-TTEVVPNYVTLVCVLS 418
Query: 159 ACTSPSNV 166
AC V
Sbjct: 419 ACGRGGAV 426
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y A VAF L+ +T+ + C+ + LGR++H ++ S + V + N
Sbjct: 190 YQNAAVAFVELRR-AGCEPDSTTFCVFFNACADQLYVDLGRQLHGFVIRSGFEKSVSVLN 248
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++ YGKC + A +V +M RN + SW +++A +A F E R
Sbjct: 249 GLIDFYGKCKEVRLAEMVFGKMENRNAV------SWCSMVAACEQNGEEEKACLFFVEGR 302
Query: 143 DRELIPDGLTVRSLLCACTS 162
+ P V S++ AC
Sbjct: 303 KEGIEPTDYMVSSVISACAG 322
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 11/132 (8%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I+P+ T+ C +SL +G+++H + DV + +MY K G +DA+
Sbjct: 104 IQPNDFTFPCAFKASASLLLPFVGKQIHAIAVKFGQINDVFVGCSAFDMYSKTGLKQDAQ 163
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+ DE+P+RNV+ +WNA I+ A F E+R PD T
Sbjct: 164 KLFDELPERNVV------TWNAYISNAVLYGRYQNAAVAFVELRRAGCEPDSTTFCVFFN 217
Query: 159 ACTSPSNVLYLD 170
AC ++ LY+D
Sbjct: 218 AC---ADQLYVD 226
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP-DVVLQNYILNMYGKCGSLEDARVVS 101
P++ A ++ + S RS LGR H I+ + P L N++++MY K A++V
Sbjct: 6 PNSLAPILESAISTRSSFLGRATHARIIKTFQSPLPPFLSNHLISMYSKLDLPNSAQLVL 65
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
P R+V+ +W ++I+G + + A+ F MR + P+ T
Sbjct: 66 HLTPTRSVV------TWTSLISGSVQNGHFSFALYHFFNMRRDNIQPNDFT 110
>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Brachypodium distachyon]
Length = 796
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
QN E VA N R P T + +S C+ L +L LG+ VH I + K + +V
Sbjct: 400 QNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLELNVY 459
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ +++MY KCGS+ +AR + D M +NV+ SWN +I+G EA+ L+
Sbjct: 460 VMTALIDMYVKCGSIAEARCIFDSMDNKNVV------SWNVMISGYGLHGQGAEALKLYK 513
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
+M D L P T S+L AC+
Sbjct: 514 DMMDAHLHPTSSTFLSVLYACS 535
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RPS T LI S L +H H++ + + + + +Y + ++ AR
Sbjct: 318 LRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSAR 377
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
D MP++ + SWNA+I+G A A++LF +M+ + P+ LT+ S L
Sbjct: 378 RAFDAMPEKT------MESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALS 431
Query: 159 AC 160
AC
Sbjct: 432 AC 433
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 12/137 (8%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK---SQPDVVL 80
+EAL AF + + R +T A ++ + + + +GR VH K +Q + V+
Sbjct: 202 SEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVH--AFGEKCGLAQHEHVV 259
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
++++Y KCG +E AR + D M E PDL ++NA+I+G + ++ LF E
Sbjct: 260 TG-LISLYAKCGDMECARHLFDRM------EGPDLVTYNALISGYSINGMVGSSVELFKE 312
Query: 141 MRDRELIPDGLTVRSLL 157
+ L P T+ +L+
Sbjct: 313 LVGMGLRPSSSTLVALI 329
Score = 37.4 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 11/104 (10%)
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
R +H ++S D + + + +Y DAR V D +P SPD WN ++
Sbjct: 143 RPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVP------SPDTVLWNTLL 196
Query: 123 AGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCACTSPSN 165
AG++ +EA+ F M + PD T+ S+L A +N
Sbjct: 197 AGLS----GSEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVAN 236
>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
Length = 709
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 14/129 (10%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSS------KSQPDVVLQNYILNMYGKCG 92
I+P T ++ CS L +L GR++H +++ S K DV+L+N +++MY KCG
Sbjct: 334 IQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCG 393
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
S+ DA +V + M + D+ASWN +I G NEA+ +FS M + +L PD +T
Sbjct: 394 SMRDAHLVFERMSNK------DVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVT 447
Query: 153 VRSLLCACT 161
+L AC+
Sbjct: 448 FVGVLSACS 456
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 11/131 (8%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
F+F Q N + P T+ C I C L L++ +K+H + + DV + + ++N
Sbjct: 123 GFEFYQKMRNEGVIPDKFTFPCAIKAC--LDVLEI-KKIHGLLFKFGLELDVFIGSALVN 179
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
Y K G +E A+V +E+P R+V+ WNA++ G A + F M D +
Sbjct: 180 CYLKFGLMEHAQVAFEELPIRDVV------LWNAMVNGYAQIGQFEMVLETFRRMNDESV 233
Query: 147 IPDGLTVRSLL 157
+P TV +L
Sbjct: 234 VPSRFTVTGVL 244
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S + + L GR +H + V + N +++MYGKC +EDA + + M
Sbjct: 239 TVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMM 298
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
++ D+ SWN+I++ + + + L M + PD +TV ++L AC+ +
Sbjct: 299 REK------DIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLA 352
Query: 165 NVLY 168
+++
Sbjct: 353 ALMH 356
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 48 CLISTCSSL--RSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA-RVVSDEM 104
C+ S +S ++L G+++H ++L + + ++NMY KC + A + SD
Sbjct: 40 CIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPT 99
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ NV ++NAII+G + E + +MR+ +IPD T + AC
Sbjct: 100 HEINVF------AFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKAC 149
>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
Length = 549
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 14/129 (10%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSS------KSQPDVVLQNYILNMYGKCG 92
I+P T ++ CS L +L GR++H +++ S K DV+L+N +++MY KCG
Sbjct: 254 IQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCG 313
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
S+ DA +V + M + D+ASWN +I G NEA+ +FS M + +L PD +T
Sbjct: 314 SMRDAHLVFERMXNK------DVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVT 367
Query: 153 VRSLLCACT 161
+L AC+
Sbjct: 368 FVGVLSACS 376
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 11/131 (8%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
F+F Q N + P T+ C I C L L++ +K+H + + DV + + ++N
Sbjct: 43 GFEFYQKMRNEGVMPDKFTFPCAIKAC--LDVLEI-KKIHGLLFKFGLELDVFIGSALVN 99
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
Y K G +E A+V +E+P R+V+ WNA++ G A + F M D +
Sbjct: 100 CYLKFGLMEHAQVAFEELPIRDVV------LWNAMVNGYAQIGQFEMVLETFRRMNDESV 153
Query: 147 IPDGLTVRSLL 157
+P TV +L
Sbjct: 154 VPSRFTVTGIL 164
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S + + L GR +H + V + N +++MYGKC +EDA + + M
Sbjct: 159 TVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMM 218
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
++ D+ SWN+I + + + + L M + PD +TV ++L AC+ +
Sbjct: 219 REK------DIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLA 272
Query: 165 NVLY 168
+++
Sbjct: 273 ALMH 276
>gi|224070865|ref|XP_002303271.1| predicted protein [Populus trichocarpa]
gi|222840703|gb|EEE78250.1| predicted protein [Populus trichocarpa]
Length = 334
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%), Gaps = 6/105 (5%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
+KVHD+ L S + DV L N ++ MYGKCGS+ DAR V D MP+RN + SW+ +
Sbjct: 8 AKKVHDYFLQSTFRGDVKLNNNVIKMYGKCGSMADARRVFDHMPERN------MDSWHLM 61
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
I A+ +E + LF +M+ L P G T ++L AC S V
Sbjct: 62 INEYANNDLGDEGLELFEQMKKLGLEPTGETFHAVLSACASAEAV 106
>gi|115479117|ref|NP_001063152.1| Os09g0411600 [Oryza sativa Japonica Group]
gi|50252330|dbj|BAD28363.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113631385|dbj|BAF25066.1| Os09g0411600 [Oryza sativa Japonica Group]
Length = 548
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 10/130 (7%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQ-PDVVLQNYILNMYGKCGSLED 96
N ++ T L++ C+ L+LGR VH H+ Q V+L N ++NMY KCG++ED
Sbjct: 287 NAKVDAVTMVALLTACAEQGDLRLGRWVHAHVEQEGRQWRTVLLDNALINMYVKCGAVED 346
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
A + MP+R+ + SW +I+G+A A EA+ LF M++R PDG T+ ++
Sbjct: 347 AHRLFLVMPRRSTV------SWTTMISGLAIHGRAEEALDLFHRMQER---PDGATLLAV 397
Query: 157 LCACTSPSNV 166
L AC++ V
Sbjct: 398 LLACSNAGRV 407
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 25/108 (23%)
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVI-----------------------ESP--DLASW 118
+L++Y G L +AR V DEMP R V E P D +W
Sbjct: 201 LLDLYAAAGQLGEARRVFDEMPGRTVAAWNCMLAAYVRCCEMDAALWFFNEMPGRDSVAW 260
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+IAG + A EA+ LF MR D +T+ +LL AC ++
Sbjct: 261 TTMIAGCVNAGKAAEAVELFWRMRKANAKVDAVTMVALLTACAEQGDL 308
>gi|125563696|gb|EAZ09076.1| hypothetical protein OsI_31338 [Oryza sativa Indica Group]
Length = 548
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 10/130 (7%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQ-PDVVLQNYILNMYGKCGSLED 96
N ++ T L++ C+ L+LGR VH H+ Q V+L N ++NMY KCG++ED
Sbjct: 287 NAKVDAVTMVALLTACAEQGDLRLGRWVHAHVEQEGRQWRTVLLDNALINMYVKCGAVED 346
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
A + MP+R+ + SW +I+G+A A EA+ LF M++R PDG T+ ++
Sbjct: 347 AHRLFLVMPRRSTV------SWTTMISGLAIHGRAEEALDLFHRMQER---PDGATLLAV 397
Query: 157 LCACTSPSNV 166
L AC++ V
Sbjct: 398 LLACSNAGRV 407
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 25/108 (23%)
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVI-----------------------ESP--DLASW 118
+L++Y G L +AR V DEMP R V E P D +W
Sbjct: 201 LLDLYAAAGQLGEARRVFDEMPGRTVAAWNCMLAAYVRCCEMDAALWFFNEMPGRDSVAW 260
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+IAG + A EA+ LF MR D +T+ +LL AC ++
Sbjct: 261 TTMIAGCVNAGRAAEAVELFWRMRKANAKVDAVTMVALLTACAEQGDL 308
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 67/116 (57%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY LI +++ ++LG +H ++ S + +QN +L++Y CG + A V D+M
Sbjct: 123 TYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKM 182
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P++ DL +WN++I G A EA++L++EM + + PDG T+ SLL AC
Sbjct: 183 PEK------DLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSAC 232
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 74/138 (53%), Gaps = 8/138 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL + + N+ + T L+S C+ + +L LG++VH +++ ++ N +
Sbjct: 205 EALALYTEM-NSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVL 263
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
L++Y +CG +E+A+ + DEM +N + SW ++I G+A EA+ LF M
Sbjct: 264 LDLYARCGRVEEAKTLFDEMVDKNSV------SWTSLIVGLAVNGFGKEAIELFKYMEST 317
Query: 145 E-LIPDGLTVRSLLCACT 161
E L+P +T +L AC+
Sbjct: 318 EGLLPCEITFVGILYACS 335
>gi|125605669|gb|EAZ44705.1| hypothetical protein OsJ_29332 [Oryza sativa Japonica Group]
Length = 548
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 10/130 (7%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQ-PDVVLQNYILNMYGKCGSLED 96
N ++ T L++ C+ L+LGR VH H+ Q V+L N ++NMY KCG++ED
Sbjct: 287 NAKVDAVTMVALLTACAEQGDLRLGRWVHAHVEQEGRQWRTVLLDNALINMYVKCGAVED 346
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
A + MP+R+ + SW +I+G+A A EA+ LF M++R PDG T+ ++
Sbjct: 347 AHRLFLVMPRRSTV------SWTTMISGLAIHGRAEEALDLFHRMQER---PDGATLLAV 397
Query: 157 LCACTSPSNV 166
L AC++ V
Sbjct: 398 LLACSNAGRV 407
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 25/108 (23%)
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVI-----------------------ESP--DLASW 118
+L++Y G L +AR V DEMP R V E P D +W
Sbjct: 201 LLDLYAAAGQLGEARRVFDEMPGRTVAAWNCMLAAYVRCCEMDAALWFFNEMPGRDSVAW 260
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+IAG + A EA+ LF MR D +T+ +LL AC ++
Sbjct: 261 TTMIAGCVNAGKAAEAVELFWRMRKANAKVDAVTMVALLTACAEQGDL 308
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 78/141 (55%), Gaps = 13/141 (9%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AF+ + I P+ T+ L+++C++ +L GR++H HI + D+++ N ++
Sbjct: 242 AFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALIT 301
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP-----SNANEAMSLFSEM 141
MY KC S+++AR + D M +R+VI SW+A+IAG A + +E L M
Sbjct: 302 MYCKCNSVQEAREIFDRMSKRDVI------SWSAMIAGYAQSGYKDKESIDEVFQLLERM 355
Query: 142 RDRELIPDGLTVRSLLCACTS 162
R + P+ +T S+L ACT+
Sbjct: 356 RREGVFPNKVTFMSILRACTA 376
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 8/142 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
N AFD + T+ I P+ T+ ++ C++ L+ GRK+H + + + DV +
Sbjct: 136 NHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVA 195
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
++ MY KCG + A V +M +RNV+ SW AII A NEA L+ +M
Sbjct: 196 TALITMYSKCGEISVACEVFHKMTERNVV------SWTAIIQANAQHRKLNEAFELYEQM 249
Query: 142 RDRELIPDGLTVRSLLCACTSP 163
+ P+ +T SLL +C +P
Sbjct: 250 LQAGISPNAVTFVSLLNSCNTP 271
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ C +L L+ G+ VH + + D V+ ++ MY KCG + +AR V D+M
Sbjct: 498 TVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKM 557
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R D +WNA++AG + EA+ LF M + P+ +T+ +++ AC+
Sbjct: 558 SNR------DTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACS 608
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 25/141 (17%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C++ +L+ GR++H + + D LQ I NMY KCGS+ +A V +M
Sbjct: 366 TFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKM 425
Query: 105 PQRNVI-----------------------ESP--DLASWNAIIAGVASPSNANEAMSLFS 139
+NV+ E P ++ SWN +IAG A + + L S
Sbjct: 426 ANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLS 485
Query: 140 EMRDRELIPDGLTVRSLLCAC 160
M+ PD +TV ++L AC
Sbjct: 486 SMKAEGFQPDRVTVITILEAC 506
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
+ +TY C+I C+ R + G+ VH + + D+ L N ++N Y K + A V
Sbjct: 54 VNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQV 113
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
M R+V+ +W+++IA A ++ +A F M D + P+ +T S+L AC
Sbjct: 114 FRRMTLRDVV------TWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKAC 167
Query: 161 TSPS 164
+ S
Sbjct: 168 NNYS 171
Score = 38.9 bits (89), Expect = 0.78, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSS-KSQPDVV 79
+ + L A D + R+ P+ T +IS CS +Q GR++ + K P
Sbjct: 575 HGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQ 634
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
++++ G+ G L++A MP PD++ W+A++ S +N A
Sbjct: 635 HYGCMVDLLGRAGRLQEAEEFIQSMPCE-----PDISVWHALLGACKSHNNVQLA 684
>gi|195614946|gb|ACG29303.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 504
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 7/128 (5%)
Query: 35 NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSL 94
FR ST+ ++ CS L S +LG +VH S D+ + + +++MY KCG +
Sbjct: 260 QRAGFRPTVSTFVSVLGACSLLSSPELGEQVHCQGTKSGLVLDIKVGSALVDMYAKCGRV 319
Query: 95 EDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD-RELIPDGLTV 153
ED R + ++MP+RNVI +W ++I G ++EA+ LF EMR+ R++ P+ T
Sbjct: 320 EDGRRIFNQMPERNVI------TWTSMIDGYGKNGLSDEALQLFGEMRERRDVRPNHATF 373
Query: 154 RSLLCACT 161
S+L AC
Sbjct: 374 LSILSACA 381
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 61 LGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNA 120
+ R+ H L S Q D +L +++ Y K GSL AR V MP R+V+ S A
Sbjct: 153 VAREAHARALRSVEQSDDILFAALVDAYVKSGSLGYARRVHGAMPVRSVVCS------TA 206
Query: 121 IIAGVASPSNANEAMSLFSEMRDRELI 147
++ G +A ++F+EM ++++
Sbjct: 207 LLVGCMKEGLFEDAEAIFNEMEGKDVV 233
>gi|224090525|ref|XP_002309013.1| predicted protein [Populus trichocarpa]
gi|222854989|gb|EEE92536.1| predicted protein [Populus trichocarpa]
Length = 583
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 10/150 (6%)
Query: 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHI 69
TF +S N + +AL AF + N R+RP T+A ++ CS L S+ G+++H H+
Sbjct: 273 TFISSCSHCNDHEKALEAFKEMLNEC--RVRPDEFTFASALAACSGLASMCNGKQIHGHL 330
Query: 70 LSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPS 129
+ ++ DV N ++NMY KCG + A + +M +N L SWN +IAG +
Sbjct: 331 IRTRLYQDVGAGNALINMYAKCGCIAKAYYIFSKMEHQN------LVSWNTMIAGFGNHG 384
Query: 130 NANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+A LF++M+ + PD +T LL A
Sbjct: 385 FGGKAFELFAKMKTMGVKPDSVTFVGLLTA 414
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 66/120 (55%), Gaps = 9/120 (7%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P LI CS ++L+ G +H + + ++ DV++ N+ILN+Y KC L +AR V D
Sbjct: 3 PELVGSLIHQCSKTKALRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQVFD 62
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
EM +RN L SW+A+I+G A+ LFS++ ++P+ S++ AC S
Sbjct: 63 EMSERN------LVSWSAMISGYEQIGEPISALGLFSKL---NIVPNEYVYASVISACAS 113
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
YA +IS C+SL+ L G+++H L + N ++ MY KCG DA + +E
Sbjct: 104 YASVISACASLKGLVQGKQIHGQALKFGLDSVSFVSNALITMYMKCGKCSDALLAYNEAL 163
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ N + ++NA+I G ++ + M PD T LL C S
Sbjct: 164 ELNPV------AYNALITGFVENQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCNS 214
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ TC+S L+ G +H + K + N I+ MY K LE+A E
Sbjct: 204 TFVGLLGTCNSRDDLKRGELLHCQTIKLKLNSTAFIGNLIITMYSKLNLLEEA-----EK 258
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR-ELIPDGLTVRSLLCACT 161
R+ IE DL SWN I+ + ++ +A+ F EM + + PD T S L AC+
Sbjct: 259 AFRS-IEEKDLISWNTFISSCSHCNDHEKALEAFKEMLNECRVRPDEFTFASALAACS 315
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 83/141 (58%), Gaps = 7/141 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N + +A+ F+ LQ + +IS+C+ L +L +G K H++++ +K +++L
Sbjct: 228 NCFEKAVETFEALQAE-GVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLIL 286
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+++MY +CG++E A +V +++P+++V+ W A+IAG+A A +A+ FSE
Sbjct: 287 GTAVVDMYARCGNVEKAVMVFEQLPEKDVL------CWTALIAGLAMHGYAEKALWYFSE 340
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M + +P +T ++L AC+
Sbjct: 341 MAKKGFVPRDITFTAVLTACS 361
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
+F + F + P T+ L+ C+ L + +G + H + + D +QN +++
Sbjct: 101 SFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVH 160
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY G + AR V M + +V+ SW +IAG +A A LF M +R L
Sbjct: 161 MYASVGDINAARSVFQRMCRFDVV------SWTCMIAGYHRCGDAKSARELFDRMPERNL 214
Query: 147 I 147
+
Sbjct: 215 V 215
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 73/117 (62%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S CS L +L +G +VH + S++ + D+ L +++MY KCG +E A+ V D M
Sbjct: 122 TLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRM 181
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P++ D+ +W+++I G+A+ +E++SLFS+M + P+G+T +L ACT
Sbjct: 182 PEK------DVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACT 232
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 25/110 (22%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI-------------------------E 111
DV L N +L Y + +AR V D MP R+++ E
Sbjct: 22 DVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTE 81
Query: 112 SPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
D SW+++I+ A + EA+ L+ EM +IPD +T+ S++ AC+
Sbjct: 82 DRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACS 131
>gi|449453543|ref|XP_004144516.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449515851|ref|XP_004164961.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 308
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 81/163 (49%), Gaps = 19/163 (11%)
Query: 11 FTFYNSQPIQNLYNEALVAFD----FLQNNTNFR--------IRPSTYACLISTCSSLRS 58
F+F +P L+N + A F Q+ + FR I T ++ +C+ L S
Sbjct: 66 FSFATRRPTY-LFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSS 124
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118
L+LGR+VH +L + D+ N ++ MYGKCG L AR V D MP+RN + SW
Sbjct: 125 LRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEV------SW 178
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+A++AG E LF M + PD LT SLL AC+
Sbjct: 179 SALMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACS 221
>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 666
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 79/145 (54%), Gaps = 14/145 (9%)
Query: 21 NLYNEALVAFDFLQ---NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
L EAL F LQ N+N TYA +++ S L +L G++VH H+L S
Sbjct: 271 GLDEEALKLFRQLQIEGMNSN----SVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSY 326
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
VVL N +++MY KCG++ AR + D MP+R I SWNA++ G + A E + L
Sbjct: 327 VVLLNSLIDMYSKCGNVCYARRIFDSMPERTCI------SWNAMLVGYSKHGMAREVLEL 380
Query: 138 FSEMRDR-ELIPDGLTVRSLLCACT 161
F MR+ ++ PD +T ++L C+
Sbjct: 381 FKLMREENKVKPDSITYLAVLSGCS 405
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 10/137 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
EAL+ L F Y +++ C S R+++ G++VH H++ + P V L+
Sbjct: 75 KEALLQMAILGREVKFE----GYDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTR 130
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++ +Y KC L DAR + DEMPQ+NV+ SW A+I+ + A EA++LF EM
Sbjct: 131 LIVLYNKCDCLGDAREMFDEMPQKNVV------SWTAMISAYSQRGFAFEALNLFVEMLR 184
Query: 144 RELIPDGLTVRSLLCAC 160
+ P+ T ++L +C
Sbjct: 185 SDTEPNHFTFATILTSC 201
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A ++++C + GR++H + + + + + +L+MY K G + DA V +
Sbjct: 193 TFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCL 252
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
P+R+V+ + AII+G A EA+ LF +++ + + +T S+L A
Sbjct: 253 PERDVV------ACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTA 301
>gi|302793382|ref|XP_002978456.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
gi|300153805|gb|EFJ20442.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
Length = 899
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 68/124 (54%), Gaps = 6/124 (4%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
++P+ YA L+ C+ +S G+ VH HILSS + +QN+++ MY KCG LEDA V
Sbjct: 24 LQPARYASLLQKCTEQKSAAAGKLVHQHILSSGCGVNRYIQNHLIFMYAKCGCLEDALEV 83
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ +P +P++ SW A+I A + E + LF +M+ PD ++L AC
Sbjct: 84 FELLP------NPNVFSWTALITAYAKEGHLREVLGLFRKMQLDGTKPDAFVFSTVLTAC 137
Query: 161 TSPS 164
+S
Sbjct: 138 SSAG 141
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 9/124 (7%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP+ TY + CSSL L GR++H IL + L N ++NMYGKCGSL++A
Sbjct: 425 VRPNSVTYLASLEACSSLNDLTRGRQLHARILLENIH-EANLSNAVINMYGKCGSLDEAM 483
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+MP+R+V+ SWN +IA A + +A+ F +M D T +
Sbjct: 484 DEFAKMPERDVV------SWNTMIATYAQHGSGRQALEFFKQMDLEGWTTDRATYLGAID 537
Query: 159 ACTS 162
AC S
Sbjct: 538 ACGS 541
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 69/118 (58%), Gaps = 8/118 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++ +++ CSS +L G+ +HD + + + VV N I+N+YGKCG + +A+ V + +
Sbjct: 129 VFSTVLTACSSAGALNEGKAIHDCAVLAGMETQVV-GNAIVNLYGKCGRVHEAKAVFERL 187
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR-DRELIPDGLTVRSLLCACT 161
P+RN++ SWNA+IA A + +AM +F M D + P+ T S++ AC+
Sbjct: 188 PERNLV------SWNALIAANAQNGHCKDAMQVFHLMDLDGSVRPNDATFVSVVDACS 239
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 8/120 (6%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLEDARVVS 101
+TY I C S+ SL LG+ +H + ++ + D + ++ MY +CGSL DA+ V
Sbjct: 530 ATYLGAIDACGSVPSLALGKTIHSIVATAAPCLEQDPGVATALVTMYARCGSLHDAKSVF 589
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
RN++ +W+ +IA A NEA+ LF EM+ + PD LT +L+ AC+
Sbjct: 590 WRSHSRNLV------TWSNLIAACAQHGRENEALDLFREMQLQGTKPDALTFSTLVAACS 643
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 73/143 (51%), Gaps = 9/143 (6%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+A+ F + + + R +T+ ++ CS+L L G+ H+ I+ + + + N
Sbjct: 209 KDAMQVFHLMDLDGSVRPNDATFVSVVDACSNLLDLPRGKSTHERIIRTGFDSYLFVGNS 268
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++NMYGKCGS++ AR+V ++M RNV+ SW +I A A L+ M
Sbjct: 269 LVNMYGKCGSVDRARLVFEKMSSRNVV------SWTVMIWAYAQQGFIRAAFDLYKRM-- 320
Query: 144 RELIPDGLTVRSLLCACTSPSNV 166
+ P+ +T +++ +C P ++
Sbjct: 321 -DCEPNAVTFMAVMDSCLRPEDL 342
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 66/118 (55%), Gaps = 4/118 (3%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ +C L ++H H+++S D VLQ ++ MYGKCGS++ A + + +
Sbjct: 328 TFMAVMDSCLRPEDLPRAEQIHAHMVASGFDSDAVLQVCLVTMYGKCGSVDSAWSIFENL 387
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+R S + +WNA+I+G+A + +A+ F +M + P+ +T + L AC+S
Sbjct: 388 KER----SNNAVTWNAMISGLAQHGESKQALECFWKMELEGVRPNSVTYLASLEACSS 441
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 48/139 (34%), Positives = 77/139 (55%), Gaps = 6/139 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
++E L AF + + +T ++S C+ L +L LG+ VH + S + +V ++N
Sbjct: 226 FSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRN 285
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG +E A V M ++ DL SWN II G+A + +A++LFS M+
Sbjct: 286 ALMDMYAKCGVVETALDVFKSM------DNKDLISWNTIIGGLAVHGHGADALNLFSHMK 339
Query: 143 DRELIPDGLTVRSLLCACT 161
PDG+T +LCACT
Sbjct: 340 IAGENPDGITFIGILCACT 358
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DV+ N +LN Y G + + +EMP+RNV SWNA+I G +E +S
Sbjct: 178 DVMSWNTVLNGYASNGDVMACERLFEEMPERNVF------SWNALIGGYTRNGCFSEVLS 231
Query: 137 LFSEMR-DRELIPDGLTVRSLLCAC 160
F M D ++P+ T+ ++L AC
Sbjct: 232 AFKRMLVDGTVVPNDATLVNVLSAC 256
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ +C + +L+ G +VH ++ S + + + +++MY G++ A V EM
Sbjct: 53 TFPVILKSCVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEM 112
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
+RNVI +W A+I G + + A LF +R+++
Sbjct: 113 IERNVI------AWTAMINGYITCCDLVTARRLFDLAPERDIV 149
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D+VL N +++ Y + + AR + D+MP ++V+ SWN ++ G AS +
Sbjct: 147 DIVLWNTMISGYIEAKDVIRARELFDKMPNKDVM------SWNTVLNGYASNGDVMACER 200
Query: 137 LFSEMRDREL 146
LF EM +R +
Sbjct: 201 LFEEMPERNV 210
>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
Length = 637
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 6/123 (4%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P Y LI+ C+ RSL R +H H+ S+ V L N ++++Y KCG++ DAR V D
Sbjct: 64 PRLYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFD 123
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
MP R D+ SW ++IAG A +EA+ L M P+G T SLL A +
Sbjct: 124 GMPAR------DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGA 177
Query: 163 PSN 165
++
Sbjct: 178 SAS 180
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 27 LVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
L+ F +Q N F TY+ + S + + +L+ G+ VH H++ S + + N IL+
Sbjct: 251 LLMFAEMQRN-GFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILD 309
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY K GS+ DAR V D + +++V+ +WN+++ A EA++ F EMR +
Sbjct: 310 MYAKSGSMIDARKVFDRVDKKDVV------TWNSMLTAFAQYGLGREAVTHFEEMRKCGV 363
Query: 147 IPDGLTVRSLLCACT 161
+ +T S+L AC+
Sbjct: 364 HLNQITFLSILTACS 378
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
R +P+ T+A L+ + S +G ++H + DV + + +L+MY +CG ++ A
Sbjct: 160 RFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMA 219
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
V D++ +N + SWNA+IAG A + + +F+EM+ T S+
Sbjct: 220 IAVFDQLESKNGV------SWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVF 273
Query: 158 CA 159
A
Sbjct: 274 SA 275
Score = 35.4 bits (80), Expect = 8.6, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +++ CS ++ G++ D + +P++ ++++ G+ G L DA V +M
Sbjct: 369 TFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKM 428
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD 149
P + P A W A++ NA + F+ EL PD
Sbjct: 429 PMK-----PTAAVWGALLGSCRMHKNAK--IGQFAADHVFELDPD 466
>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
Length = 1026
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+QN Y ++ F + F TY+ ++S C+ L+ L LG ++H I+ +K ++
Sbjct: 404 VQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNL 463
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N +++MY K G+LEDAR Q +I + D SWN II G + EA LF
Sbjct: 464 FVGNALVDMYAKSGALEDAR------QQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLF 517
Query: 139 SEMRDRELIPDGLTVRSLLCACTS 162
M ++PD +++ S+L AC S
Sbjct: 518 RRMNLLGILPDEVSLASILSACAS 541
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 71/144 (49%), Gaps = 11/144 (7%)
Query: 29 AFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A +F QN I+ ST ++S +SL +L G VH L +V + + +++
Sbjct: 311 AIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVS 370
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG +E A+ V D + ++NV+ WNA++ G ANE M LF M+
Sbjct: 371 MYAKCGKMEAAKKVFDTLNEQNVV------LWNAMLGGYVQNGYANEVMELFFNMKSCGF 424
Query: 147 IPDGLTVRSLLCACTSPSNVLYLD 170
PD T S+L AC + YLD
Sbjct: 425 YPDDFTYSSILSACAC---LKYLD 445
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T+ + C+ + S++ G + H I + D + + +++MY KCG ++ + V E
Sbjct: 733 ATFVSALRACAVVSSIKDGTETHSLIFHTGFDSDELTSSALVDMYAKCGDVKSSMQVFKE 792
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
M ++ D+ SWN++I G A A +A+ +F EM+ + PD +T +L AC+
Sbjct: 793 MSRKK-----DVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLGVLTACSHS 847
Query: 164 SNV 166
V
Sbjct: 848 GRV 850
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 66/114 (57%), Gaps = 7/114 (6%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
A ++S C+S+R L+ G++VH + + + + + +++MY KCG+++ A + MP+
Sbjct: 533 ASILSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPE 592
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
R+V+ S NA+IAG A N +A++LF +M + +T SLL AC
Sbjct: 593 RSVV------SMNALIAGYAQI-NLEQAVNLFRDMLVEGINSTEITFASLLDAC 639
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A ++S+C+ L ++ GR+VH +++ + + ++ MY KC L DAR + D
Sbjct: 162 TFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARSIFDGA 221
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ D SW ++I G EA+ +F EM PD + +++ A
Sbjct: 222 VEL------DKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINA 270
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 10/125 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQ-PDVVLQNYILNMYGKCGSLEDARVVSDE 103
T+A L+ C + L LGR++H IL Q D L +L MY DA V+ E
Sbjct: 631 TFASLLDACHEQQKLNLGRQIHSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSE 690
Query: 104 M--PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P+ V+ W A+I+G++ + A+ L+ EMR ++PD T S L AC
Sbjct: 691 FSNPKSAVV-------WTAMISGLSQNDCSVVALQLYKEMRSCNVLPDQATFVSALRACA 743
Query: 162 SPSNV 166
S++
Sbjct: 744 VVSSI 748
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 64 KVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIA 123
KV + +PD V ++N Y G L++A + MP RNV+ +WN +I+
Sbjct: 247 KVFQEMEKVGQEPDQVAFVTVINAYVDLGRLDNASDLFSRMPNRNVV------AWNLMIS 300
Query: 124 GVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
G A EA+ F MR + T+ S+L A S
Sbjct: 301 GHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIAS 339
>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 697
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 6/123 (4%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P Y LI+ C+ RSL R +H H+ S+ V L N ++++Y KCG++ DAR V D
Sbjct: 64 PRLYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFD 123
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
MP R D+ SW ++IAG A +EA+ L M P+G T SLL A +
Sbjct: 124 GMPAR------DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGA 177
Query: 163 PSN 165
++
Sbjct: 178 SAS 180
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 27 LVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
L+ F +Q N F TY+ + S + + +L+ G+ VH H++ S + + N IL+
Sbjct: 251 LLMFAEMQRN-GFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILD 309
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY K GS+ DAR V D + +++V+ +WN+++ A EA++ F EMR +
Sbjct: 310 MYAKSGSMIDARKVFDRVDKKDVV------TWNSMLTAFAQYGLGREAVTHFEEMRKCGV 363
Query: 147 IPDGLTVRSLLCACT 161
+ +T S+L AC+
Sbjct: 364 HLNQITFLSILTACS 378
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
R +P+ T+A L+ + S +G ++H + DV + + +L+MY +CG ++ A
Sbjct: 160 RFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMA 219
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
V D++ +N + SWNA+IAG A + + +F+EM+ T S+
Sbjct: 220 IAVFDQLESKNGV------SWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVF 273
Query: 158 CA 159
A
Sbjct: 274 SA 275
Score = 35.4 bits (80), Expect = 8.6, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +++ CS ++ G++ D + +P++ ++++ G+ G L DA V +M
Sbjct: 369 TFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKM 428
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD 149
P + P A W A++ NA + F+ EL PD
Sbjct: 429 PMK-----PTAAVWGALLGSCRMHKNAK--IGQFAADHVFELDPD 466
>gi|255583218|ref|XP_002532374.1| basic helix-loop-helix-containing protein, putative [Ricinus
communis]
gi|223527930|gb|EEF30017.1| basic helix-loop-helix-containing protein, putative [Ricinus
communis]
Length = 310
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 83/144 (57%), Gaps = 7/144 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ EALV F+ + T T A +IS C+ L +L LG+++H +++ + DV + +
Sbjct: 154 FGEALVVFNQMIK-TGICPDEVTMATVISACAHLGALDLGKEIHLYVMQNGFDLDVYIGS 212
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCGSL+ + +V ++ ++N L WN++I G+A+ A EA+ +F +M
Sbjct: 213 SLIDMYAKCGSLDRSLLVFFKLQEKN------LFCWNSVIEGLAAHGYAKEALEMFRKMG 266
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
++ P+G+T S+L AC V
Sbjct: 267 REKIKPNGVTFISVLNACAHAGLV 290
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 27/135 (20%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
+I PS T++ LI C ++ G VH H+ + V +Q +++ Y G + ++
Sbjct: 5 KILPSSYTFSSLIKACGLASEVKFGEVVHGHVWRHGLESHVFVQTALVDFYSTVGRIIES 64
Query: 98 RVVSDEMPQRNVIESPDL-------------------------ASWNAIIAGVASPSNAN 132
+ V DEMP+R++ + A+WN +I G + +
Sbjct: 65 KKVFDEMPERDIFAWATMVTSLARIGDMSSARRLFDMMPEKNTAAWNTLIYGYSKLRDLE 124
Query: 133 EAMSLFSEMRDRELI 147
A LFS+M +R++I
Sbjct: 125 SAEFLFSQMHERDII 139
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 76/142 (53%), Gaps = 6/142 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
+N + + + FL + + +I++C+ L +L+LG + HD+IL +K +++
Sbjct: 222 KNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLI 281
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
L +++MY +CGS++ A V D++P R D SW +IAG A A +A+ FS
Sbjct: 282 LGTALVDMYARCGSIDKAIWVFDQLPGR------DALSWTTLIAGFAMHGYAEKALEYFS 335
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
M L P +T ++L AC+
Sbjct: 336 RMEKAGLTPREITFTAVLSACS 357
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY L+ C+ SL +G + H I+ DV +QN ++ MY G ++ A V
Sbjct: 115 TYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRR- 173
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
I D+ SW +++AG + A LF +M ++ L+
Sbjct: 174 -----ISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLV 211
Score = 39.3 bits (90), Expect = 0.55, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 58/113 (51%), Gaps = 9/113 (7%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
+ +C++L L++ +H H++ + + DV + ++++ L+ A V +
Sbjct: 21 FLESCTTLSHLKI---IHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQ----- 72
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I++P+L +N+ I G + + +++ + + + L+PD LT L+ ACT
Sbjct: 73 -IQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACT 124
>gi|297842491|ref|XP_002889127.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334968|gb|EFH65386.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 466
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 79/140 (56%), Gaps = 9/140 (6%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP--DVVLQ 81
NEA+ F ++ + F T + S C L L L ++H +L +K++ DV++
Sbjct: 199 NEAVEMFMEMRR-SGFEPDDFTMVSVTSACGGLGDLNLAFQLHKCVLQAKTEEKSDVMMM 257
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N +++MYGKCG ++ A V +EMPQRNV+ SW+++I G A+ N EA+ F +M
Sbjct: 258 NSLIDMYGKCGRMDFAIQVFEEMPQRNVV------SWSSMITGYAANGNTLEALECFRQM 311
Query: 142 RDRELIPDGLTVRSLLCACT 161
R+ + P+ +T +L AC
Sbjct: 312 REFGVRPNKITFVGVLSACV 331
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T +I + LG+++H + D ++ + +Y K G LE+AR V DE
Sbjct: 118 TLPIVIKAAVQIHDFPLGKQLHSVAVRLGFVGDEFCESGFITLYCKAGELENARNVFDEN 177
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P+R L SWNAII G+ ANEA+ +F EMR PD T+ S+ AC
Sbjct: 178 PERK------LGSWNAIIGGLNHAGRANEAVEMFMEMRRSGFEPDDFTMVSVTSACGG 229
>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 78/141 (55%), Gaps = 11/141 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y EAL F +Q + P T +IS C++L +L LG VH ++ + + +V +
Sbjct: 204 YEEALECFREMQLAG---VVPDFVTVIAIISACANLGALGLGLWVHRLVMKKEFRDNVKV 260
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MY +CG +E AR V D M QRN L SWN+II G A A++A+S F
Sbjct: 261 LNSLIDMYARCGCIELARQVFDGMSQRN------LVSWNSIIVGFAVNGLADKALSFFRS 314
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M+ L P+G++ S L AC+
Sbjct: 315 MKKEGLEPNGVSYTSALTACS 335
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 29/146 (19%)
Query: 45 TYACLISTCS---SLRSLQLGRKVHDHILSSK-SQPDVVLQNYILNMYGKCGSLEDARVV 100
T L+S C+ S S+ G +H H + DV++ +++MY KCG L+ AR+V
Sbjct: 89 TLITLLSACAHSPSKTSITFGAALHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLV 148
Query: 101 SDEMPQRNVIE-------------------------SPDLASWNAIIAGVASPSNANEAM 135
D+M RN++ ++ SW +I G EA+
Sbjct: 149 FDQMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEAL 208
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACT 161
F EM+ ++PD +TV +++ AC
Sbjct: 209 ECFREMQLAGVVPDFVTVIAIISACA 234
>gi|297795827|ref|XP_002865798.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311633|gb|EFH42057.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 701
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N + EA F+ L+ +F++ STY L+ C L+S++ ++V+ I+S+ +P+ +
Sbjct: 101 NRFREAFELFEILEIRCSFKVGVSTYDALVEACIRLKSIRCVKRVYGFIISNGFEPEKYM 160
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N IL M+ KCG + DAR + DEMP+RN L S+N+II+G + N EA LF
Sbjct: 161 MNRILLMHVKCGMIIDARRLFDEMPERN------LFSYNSIISGFVNFGNYEEAFELFKL 214
Query: 141 M 141
M
Sbjct: 215 M 215
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 73/138 (52%), Gaps = 6/138 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y+E + + ++ + T + +I + L L+L ++ H ++ S + ++V
Sbjct: 305 YSEEALCLLYEMRDSGVSMDQFTLSIMIRISTRLAKLELTKQAHASLIRSGFESEIVANT 364
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++ Y K G ++ AR V D++P++N+I SWNA++ G A+ +A+ LF M
Sbjct: 365 ALVDFYSKWGRVDTARYVFDKLPRKNII------SWNALMGGYANHGRGTDAVRLFERMI 418
Query: 143 DRELIPDGLTVRSLLCAC 160
++ P+ +T ++L AC
Sbjct: 419 AAKVAPNHVTFLAVLSAC 436
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 7/135 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y EA F + + T+A ++ + L S+ +G+++H L + +
Sbjct: 205 YEEAFELFKLMWEELS-DCETHTFAVMLRASAGLWSVYVGKQLHVCALKLGVVDNTFVSC 263
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG +EDAR + MP++ + +WN I+AG A + EA+ L EMR
Sbjct: 264 GLIDMYSKCGDIEDARCAFESMPEKTTV------AWNNIVAGYALHGYSEEALCLLYEMR 317
Query: 143 DRELIPDGLTVRSLL 157
D + D T+ ++
Sbjct: 318 DSGVSMDQFTLSIMI 332
>gi|347954510|gb|AEP33755.1| chloroplast biogenesis 19, partial [Olimarabidopsis pumila]
Length = 475
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 84/144 (58%), Gaps = 11/144 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ + EALV F +Q + ++P A + ++ C++L +L LG VH +++S + +
Sbjct: 159 KGFHEEALVWFREMQISG---VKPDYVAIIAALNACTNLGALSLGLWVHRYVMSQDFKNN 215
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + N ++++Y +CG +E AR V D+M +R V+ SWN++I G A+ NA+E++
Sbjct: 216 VRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVV------SWNSVIVGFAANGNAHESLVY 269
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F +M++ P+ +T L AC+
Sbjct: 270 FRKMQEEGFKPNAVTFTGALTACS 293
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 28/145 (19%)
Query: 45 TYACLISTCSSL--RSLQLGRKVHDHILS-SKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
T+ L+S C S LG +H + + V++ IL MY K G ++ AR+V
Sbjct: 48 TFIALLSGCGDFPSGSETLGDLLHGYACKLGLDRNHVMVGTAILGMYSKRGRVKKARLVF 107
Query: 102 DEMPQRNVIE-------------------------SPDLASWNAIIAGVASPSNANEAMS 136
D M +N + PDL SW A++ G EA+
Sbjct: 108 DYMDDKNSVTWNTMIDGYMRSGQVHNAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEALV 167
Query: 137 LFSEMRDRELIPDGLTVRSLLCACT 161
F EM+ + PD + + + L ACT
Sbjct: 168 WFREMQISGVKPDYVAIIAALNACT 192
>gi|242055533|ref|XP_002456912.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
gi|241928887|gb|EES02032.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
Length = 648
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 7/116 (6%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
+ L++TC+ L L LGR +H S ++ + + +++MYGKCG ++DA V EMPQ
Sbjct: 325 SSLLTTCAGLLGLDLGRALHAVAARSCIDANIFVASALVDMYGKCGGIQDAEQVFFEMPQ 384
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSLLCACT 161
RN L +WNA+I G A +A A+++F EM RE P+ +T+ ++L AC+
Sbjct: 385 RN------LVTWNAMIGGYAHIGDAWNALAVFDEMIMGRETAPNYITIVNVLTACS 434
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
+ C+ + L LG + H + DV + N +++ YGKC + AR+V D M RN
Sbjct: 226 FFNACAGMTCLSLGEQFHGFVAKCGFDKDVSVSNSMVDFYGKCRCMGKARLVFDGMGVRN 285
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ SW +++ A EA ++ R P V SLL C
Sbjct: 286 SV------SWCSMVVAYAQNGAEEEAFLVYLGARRAGEEPTDFMVSSLLTTC 331
Score = 43.9 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 18/151 (11%)
Query: 15 NSQPIQNLYN-EALVAFDFLQNNTNFRIRPSTYACLIST---CSSLRSLQLGRKVHDHIL 70
+++P+Q L A++ N+ F PS + S C++ +G +VH L
Sbjct: 93 HARPLQALSAFAAMLRLGLRPNDFTF---PSAFKAAASAPPRCAA----AVGPQVHALAL 145
Query: 71 SSKSQPD-VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPS 129
PD + L+MY K G L AR + DEMP RNV+ +WNA++
Sbjct: 146 RFGYLPDDAFVSCAALDMYFKTGRLALARRLFDEMPNRNVV------AWNAVMTNAVLDG 199
Query: 130 NANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
E + + +R +P+ ++V + AC
Sbjct: 200 RPIETVEAYFGLRGAGGMPNVVSVCAFFNAC 230
>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 638
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 79/145 (54%), Gaps = 14/145 (9%)
Query: 21 NLYNEALVAFDFLQ---NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
L EAL F LQ N+N TYA +++ S L +L G++VH H+L S
Sbjct: 243 GLDEEALKLFRQLQIEGMNSN----SVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSY 298
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
VVL N +++MY KCG++ AR + D MP+R I SWNA++ G + A E + L
Sbjct: 299 VVLLNSLIDMYSKCGNVCYARRIFDSMPERTCI------SWNAMLVGYSKHGMAREVLEL 352
Query: 138 FSEMRDR-ELIPDGLTVRSLLCACT 161
F MR+ ++ PD +T ++L C+
Sbjct: 353 FKLMREENKVKPDSITYLAVLSGCS 377
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 74/137 (54%), Gaps = 10/137 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
EAL+ L F Y +++ C S R+++ G++VH H++ + P V L+
Sbjct: 47 KEALLQMAILGREVKF----EGYDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTR 102
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++ +Y KC L DAR + DEMPQRNV+ SW A+I+ + A EA++LF EM
Sbjct: 103 LIVLYNKCDCLGDARGMFDEMPQRNVV------SWTAMISAYSQRGFAFEALNLFVEMLR 156
Query: 144 RELIPDGLTVRSLLCAC 160
+ P+ T ++L +C
Sbjct: 157 SDTEPNHFTFATILTSC 173
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A ++++C + GR++H + + + + + +L+MY K G + DA V +
Sbjct: 165 TFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCL 224
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
P+R+V+ + AII+G A EA+ LF +++ + + +T S+L A
Sbjct: 225 PERDVV------ACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTA 273
>gi|297745796|emb|CBI15852.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 75/131 (57%), Gaps = 9/131 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV-LQNYILNMYGKCGSLEDA 97
++P TY + S ++L+ L GR+VH ++ S + V+ L N I++ Y KC SLEDA
Sbjct: 378 VKPDLYTYGGVFSAIAALKWLYFGRQVHGMVVKSGNGSRVLSLNNAIVDAYFKCQSLEDA 437
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R V D M +R D+ SW +++ +EA+S+FS+MR++ +P+ T S+L
Sbjct: 438 RKVFDRMQER------DMVSWTTLVSAYVQCYQPSEALSIFSQMREQGFMPNQFTFSSVL 491
Query: 158 CACTSPSNVLY 168
AC S S + Y
Sbjct: 492 VACASLSLLEY 502
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
LY EA F F T++ ++ +R GR+VH ++ + +VV+
Sbjct: 258 GLYLEAFHQF-LAMITQGFTPNMYTFSSVLKAVGKIRDATKGREVHHCVMEYGMESNVVV 316
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+++MY KCG L DAR V D ++ + +P WNA+I+ EA+ LF E
Sbjct: 317 GTSLIDMYSKCGHLSDARSVFDRNFYKSKVNNP----WNAMISSYTQCGYWQEALDLFIE 372
Query: 141 MRDRELIPDGLTVRSLLCA 159
M ++ PD T + A
Sbjct: 373 MSLNDVKPDLYTYGGVFSA 391
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+EAL F ++ F T++ ++ C+SL L+ GR+VH I + D +++
Sbjct: 466 SEALSIFSQMREQ-GFMPNQFTFSSVLVACASLSLLEYGRQVHGLICKAGLDDDNCIESS 524
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+ NMY K G++ DA V ++ I PD+ SW+AII G A ++A+ L +M
Sbjct: 525 LTNMYAKSGNIIDAVEVFEK------IVCPDVVSWSAIIYGYAQHGFLDKAVELVQKMEQ 578
Query: 144 RELIPDG-LTVRSLLC 158
+ P+ + + L+C
Sbjct: 579 SGIQPNSNILLSHLIC 594
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
Y+ +I +C L ++LG VH I+ DV++ +L+MY K + E + V + +
Sbjct: 180 VYSAVIQSCIGLGCIELGEAVHGQIVKRGFWDDVIVGTSLLSMYAKLHNSEASVRVFNAI 239
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ N + SW A+I+G++S EA F M + P+ T S+L A
Sbjct: 240 AEHNQV------SWGAVISGLSSNGLYLEAFHQFLAMITQGFTPNMYTFSSVLKA 288
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 58 SLQLGRKVHDHILSSK--SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDL 115
S++ G+ VH +L S + + L N++ MY +C +A V D MP RN
Sbjct: 90 SIREGKSVHGLLLKSSFGDEESIRLFNHVAYMYAECSCFVEAWRVFDGMPHRNSF----- 144
Query: 116 ASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
SW +IAG + F +M ++PD +++ +C
Sbjct: 145 -SWTVMIAGSKKNGLFLDGFRFFYDMLVDGILPDEFVYSAVIQSC 188
>gi|357508535|ref|XP_003624556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499571|gb|AES80774.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 476
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 8/135 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AFD + +RP+ T LI C+ L SL+LGR++HD L + + L +++
Sbjct: 235 AFDLFERMLIDNVRPNEFTLVSLIKACTDLGSLKLGRRMHDFALKNGFELGPFLGTALVD 294
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCGSL+ A V M RN LA+WN ++ NE + LF EM +
Sbjct: 295 MYSKCGSLDAAVKVFGLMEVRN------LATWNTMLTSFGVHGFGNEVLDLFKEMEKAGV 348
Query: 147 IPDGLTVRSLLCACT 161
+PD +T +L AC
Sbjct: 349 VPDAITFVGVLSACV 363
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 26/143 (18%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS-LEDARVVSDE 103
TY +I+ C + + GR H + DV +QN ++N+Y K G ++D V D+
Sbjct: 120 TYPFVINACIASGVIDFGRLTHGLAIKMGFWSDVYVQNNMMNLYFKIGGDVDDGWKVFDK 179
Query: 104 MPQRNV-------------------------IESPDLASWNAIIAGVASPSNANEAMSLF 138
M RNV I S ++ SW A+I G N +A LF
Sbjct: 180 MRVRNVVSWTTVIAGLVACGKLDTAREVFERIPSKNVVSWTAMINGYVKNDNPIKAFDLF 239
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
M + P+ T+ SL+ ACT
Sbjct: 240 ERMLIDNVRPNEFTLVSLIKACT 262
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
+ C++ + L +++H I+ + D +L + + G ++ A +V D++
Sbjct: 26 FLQNCNNFKQL---KQIHARIIRFRLTHDQLLIRKLCQISSSYGKIDYASLVFDQL---- 78
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
PD+ +WN +I + +++ LF +M +PD T ++ AC +
Sbjct: 79 --NDPDIFTWNVMIRAYNTSGLPQKSIFLFKDMICCGFLPDKFTYPFVINACIA 130
>gi|255564188|ref|XP_002523091.1| magnesium/proton exchanger, putative [Ricinus communis]
gi|223537653|gb|EEF39276.1| magnesium/proton exchanger, putative [Ricinus communis]
Length = 1015
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 82/141 (58%), Gaps = 7/141 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y EAL F +Q ++P+ T + ++S C L +L+ G+ H +I + + D+VL
Sbjct: 194 YKEALALFREMQMLEVRDVKPNEFTMSSVLSACGRLGALEHGKWAHAYIEKCEMKIDIVL 253
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+++MY KCGS++ AR+V D N+ + D+ +W+A+I+G+A E + LFS+
Sbjct: 254 GTSLIDMYAKCGSIDRARLVFD-----NLGSNKDVMAWSAMISGLAMHGYGEEGLELFSK 308
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M ++ L P+ +T ++L AC
Sbjct: 309 MVNQGLRPNNVTFLAVLYACV 329
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 13/115 (11%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
LI+ SS + R++ D I +QPD+ N I+N K G ++ AR + D MP+RN
Sbjct: 122 LINMYSSCGNFSFARQIFDEI----AQPDLPSWNSIINASVKVGLVDVARGLFDVMPERN 177
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMR---DRELIPDGLTVRSLLCAC 160
VI +W+ +I G EA++LF EM+ R++ P+ T+ S+L AC
Sbjct: 178 VI------TWSCMINGFVKCGEYKEALALFREMQMLEVRDVKPNEFTMSSVLSAC 226
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ + S L G+++H I D +Q ++NMY CG+ AR + DE+
Sbjct: 83 TFPFLLQSFHSQPHLVSGKQIHTQIHHFGLVHDSFVQTSLINMYSSCGNFSFARQIFDEI 142
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
Q PDL SWN+II + A LF M +R +I
Sbjct: 143 AQ------PDLPSWNSIINASVKVGLVDVARGLFDVMPERNVI 179
>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
Length = 789
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 6/131 (4%)
Query: 36 NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
N FR TYA ++S C+S+ L+ G +H I+ + DV +++MY KCG LE
Sbjct: 239 NQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLE 298
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
AR V D + + N + SW ++I GVA EA+ LF++MR+ + D T+ +
Sbjct: 299 SARQVFDGLTEHNAV------SWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLAT 352
Query: 156 LLCACTSPSNV 166
+L C S ++
Sbjct: 353 VLGVCLSQKDI 363
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 8/97 (8%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA-RVVSDEMPQRN 108
+ C+SLRS+ + RK+H ++ + + LQN++LNMY CG + DA RV
Sbjct: 11 MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGG------ 64
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
I P++ SWN +I+G A EA LF +M +R+
Sbjct: 65 -IMFPNVYSWNTMISGFADSGQMREAEKLFEKMPERD 100
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ IS C+ L L LG ++ +V + N ++ MY +CG +E+A+ + +
Sbjct: 481 TFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSI 540
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+N L SWNA++AG A + + +F +M + +PD ++ S+L C+
Sbjct: 541 VMKN------LVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSG 594
Query: 165 NV 166
V
Sbjct: 595 FV 596
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++ C S + + +G ++H H ++ V + N ++ MY KCG + A + M
Sbjct: 349 TLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELM 408
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
P R++I SW A+I + + +A F +M +R +I
Sbjct: 409 PIRDII------SWTAMITAFSQAGDVEKAREYFDKMPERNVI 445
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 37/144 (25%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
I SL L+L ++H D ++ +L+MY KCG+++ A+ V P
Sbjct: 121 IKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTP---- 176
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI---------------------- 147
+P L WN++I G + + +A+ LF++M +R+ +
Sbjct: 177 --NPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTF 234
Query: 148 ---------PDGLTVRSLLCACTS 162
P+ +T S+L ACTS
Sbjct: 235 LEMWNQGFRPNSMTYASVLSACTS 258
>gi|297733959|emb|CBI15206.3| unnamed protein product [Vitis vinifera]
Length = 416
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 80/145 (55%), Gaps = 8/145 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y EA+ F F + + +T+ +S C++L L +GR+VH I + V + N
Sbjct: 133 YKEAIELF-FRMLQSGLKPDDATFVVTLSACAALGELDIGRRVHSCIDHTGLGNVVSVSN 191
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG +E A + ++M RN++ SWN +I G+A + +EA+ LFS+M
Sbjct: 192 SLIDMYAKCGVVEAAYEIFNKMKGRNIV------SWNTMILGLAMHGHGDEALELFSKML 245
Query: 143 DREL-IPDGLTVRSLLCACTSPSNV 166
+ +L P+ +T +LCAC+ V
Sbjct: 246 EEKLATPNEVTFLGVLCACSHGGMV 270
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY+ L+ C L S LG+++H ++L + V ++N +++MYG +E A + +EM
Sbjct: 53 TYSFLVKVCGQLGSDLLGKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEM 112
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P+ L +WN II EA+ LF M L PD T L AC +
Sbjct: 113 PKSY------LVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAA 164
>gi|255556057|ref|XP_002519063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541726|gb|EEF43274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 386
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 8/123 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I PS T+ ++ +C+ L SL+LG+ VH H+L + DV +Q ++ Y K G L +AR
Sbjct: 107 ISPSAYTFTSIVKSCADLSSLKLGKVVHGHVLVNGFGLDVYVQAALVACYAKSGDLGNAR 166
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V D+M +R+V+ SWN+II+G EA+ LF +MR+ PD T +L
Sbjct: 167 KVFDKMRERSVV------SWNSIISGYEQNGFGREAIRLFKKMREEGFEPDSATFVIVLS 220
Query: 159 ACT 161
AC
Sbjct: 221 ACA 223
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 79/148 (53%), Gaps = 8/148 (5%)
Query: 20 QNLYN-EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
QN + EA+ F ++ F +T+ ++S C+ L +L +G VH + + +V
Sbjct: 189 QNGFGREAIRLFKKMREE-GFEPDSATFVIVLSACAQLGALSMGCWVHKYTIGHGLDLNV 247
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
VL ++NMY +CG++ AR V D M ++NV+ +W A+I+G + + +A+ LF
Sbjct: 248 VLGTSLINMYTRCGTVTKAREVFDSMKEKNVV------TWTAMISGYGTNGHGRQAVQLF 301
Query: 139 SEMRDRELIPDGLTVRSLLCACTSPSNV 166
EM+ R P+ +T ++L AC V
Sbjct: 302 DEMKRRGPCPNSVTFVAVLSACAHAGLV 329
>gi|302799473|ref|XP_002981495.1| hypothetical protein SELMODRAFT_114873 [Selaginella moellendorffii]
gi|300150661|gb|EFJ17310.1| hypothetical protein SELMODRAFT_114873 [Selaginella moellendorffii]
Length = 605
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
++ CS + L LG+ +H ILS + V + +LNMY KCG+++ AR V D MP ++V
Sbjct: 400 LAACSGAKDLALGKAIHARILSPDLRKSVFVGTALLNMYAKCGAIKQARAVFDRMPHKDV 459
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+ + D +W++++AG A S+A +A+ L+ +M + PD +T S+L +C+ S
Sbjct: 460 V-ARDTVTWSSLVAGYAHHSHA-DAILLYRDMHLEGIQPDSVTYVSILNSCSHAS 512
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++ C + + L +++H+ I + + L N ++ MYGKC SL+DAR+V + +
Sbjct: 19 TLAHAVNLCGNSKDLGELKRIHNLITQTPHSHNTFLLNLLVRMYGKCASLDDARLVFESI 78
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
P+ P+ SW I++ A + A F + + L+
Sbjct: 79 PE------PNEFSWTIIVSAFAQNGQLSSAKEYFDKAPIKTLV 115
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 10/91 (10%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEM-PQRNVIESPDLASWNAIIAGVASPSNANEAM 135
D V N ++ Y + G ++DARV+ D M P+++V+ SW+ IIA A + EA+
Sbjct: 328 DSVSWNSLIQGYAQLGYVDDARVMFDTMMPKKDVV------SWSCIIAAYAQSGHCREAI 381
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+LF M ++ P+ + + S L AC+ ++
Sbjct: 382 NLFQRM---DVEPNEMVIVSTLAACSGAKDL 409
>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera]
gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
Length = 742
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 78/144 (54%), Gaps = 11/144 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
N + +A+ + +Q + + P + C++ CS + L++G++VH I + D
Sbjct: 147 HNFFGDAIEMYSRMQASG---VNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESD 203
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V +QN ++ +Y KCG +E AR+V + + RN++ SW ++I+G EA+ +
Sbjct: 204 VFVQNGLVALYAKCGRVEQARIVFEGLDDRNIV------SWTSMISGYGQNGLPMEALRI 257
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F +MR R + PD + + S+L A T
Sbjct: 258 FGQMRQRNVKPDWIALVSVLRAYT 281
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 10/110 (9%)
Query: 54 SSLRSLQLGRKVHDHI--LSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIE 111
+ + L+ G+ +H + + + +PD+++ + MY KCG + AR D+M E
Sbjct: 281 TDVEDLEQGKSIHGCVVKMGLEFEPDLLIS--LTAMYAKCGQVMVARSFFDQM------E 332
Query: 112 SPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P++ WNA+I+G A NEA+ LF EM + + D +TVRS + AC
Sbjct: 333 IPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACA 382
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 7/137 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
NEA+ F + + N R T I C+ + SL L + + D+I ++ + DV +
Sbjct: 353 NEAVGLFQEMISK-NIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTA 411
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+++M+ KCGS++ AR V D ++V+ W+A+I G +A+ LF M+
Sbjct: 412 LIDMFAKCGSVDLAREVFDRTLDKDVV------VWSAMIVGYGLHGRGQDAIDLFYAMKQ 465
Query: 144 RELIPDGLTVRSLLCAC 160
+ P+ +T LL AC
Sbjct: 466 AGVCPNDVTFVGLLTAC 482
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 64 KVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIA 123
++H ++ S L +N G + AR V DE P+ P + WNAII
Sbjct: 89 QIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPE------PSVFLWNAIIR 142
Query: 124 GVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
G +S + +A+ ++S M+ + PDG T+ +L AC+
Sbjct: 143 GYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSG 181
>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 46/124 (37%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Query: 40 RIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
RI PSTY +I C+ L L +G VH H+ S D +Q ++ Y K + A
Sbjct: 103 RIVPSTYTFTSVIKACADLSLLCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSCTPRVA 162
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R V DEMPQR+++ +WN++I+G ANEA+ +F++MR+ + PD T S+L
Sbjct: 163 RKVFDEMPQRSIV------AWNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVL 216
Query: 158 CACT 161
AC+
Sbjct: 217 SACS 220
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 47/141 (33%), Positives = 77/141 (54%), Gaps = 11/141 (7%)
Query: 22 LYNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
L NEA+ F+ ++ + R+ P +T+ ++S CS L SL G +HD I+ S +VV
Sbjct: 189 LANEAVEVFNKMRES---RVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMNVV 245
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
L ++NM+ +CG + AR V M + NV+ W A+I+G EAM +F
Sbjct: 246 LATSLVNMFSRCGDVGRARAVFYSMIEGNVV------LWTAMISGYGMHGYGVEAMEVFH 299
Query: 140 EMRDRELIPDGLTVRSLLCAC 160
M+ R ++P+ +T ++L AC
Sbjct: 300 RMKARGVVPNSVTFVAVLSAC 320
>gi|414879404|tpg|DAA56535.1| TPA: pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 11/139 (7%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+AL AF + R++P T A L+S C+ L SL+ G+KVHD I + + + N
Sbjct: 266 QALEAFHLMLQE---RVKPDEFTMASLLSACAQLGSLEQGKKVHDFINQEHIRKNHFVMN 322
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG L AR + D M +N WN +I+ +AS ++EA+ LF +M
Sbjct: 323 GLIDMYAKCGDLAHARYIFDSMRWKNN------ECWNTMISALASHGQSDEALHLFFQME 376
Query: 143 DRELIPDGLTVRSLLCACT 161
P+ +TV ++L ACT
Sbjct: 377 RSGRKPNTITVLAVLGACT 395
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Query: 51 STCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI 110
+ SS L LG+ +H L S D+++ I++MY KCG+L DAR DEMP RNVI
Sbjct: 64 AAASSPAELGLGKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVI 123
Query: 111 ESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
S+NA++AG A + + A++LF MR
Sbjct: 124 ------SYNALLAGYAVAGDMDGALALFGGMR 149
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ ++ R+V D + + + + + ++ Y K G E+AR V D +
Sbjct: 188 TWTVLVQGYVCAGDMETAREVFDRMPAR----NAFVWSSMVTGYFKAGDAEEARAVFDRI 243
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P RN L +WNA+IAG A + +A+ F M + PD T+ SLL AC
Sbjct: 244 PTRN------LVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSAC 293
>gi|195651797|gb|ACG45366.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 11/139 (7%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+AL AF + R++P T A L+S C+ L SL+ G+KVHD I + + + N
Sbjct: 266 QALEAFHLMLQE---RVKPDEFTMASLLSACAQLGSLEQGKKVHDFINQEHIRKNHFVMN 322
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG L AR + D M +N WN +I+ +AS ++EA+ LF +M
Sbjct: 323 GLIDMYAKCGDLAHARYIFDSMRWKNN------ECWNTMISALASHGQSDEALHLFFQME 376
Query: 143 DRELIPDGLTVRSLLCACT 161
P+ +TV ++L ACT
Sbjct: 377 RSGRKPNTITVLAVLGACT 395
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Query: 51 STCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI 110
+ SS L LG+ +H L S D+++ I++MY KCG+L DAR DEMP RNVI
Sbjct: 64 AAASSPTELGLGKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVI 123
Query: 111 ESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
S+NA++AG A + + A++LF MR
Sbjct: 124 ------SYNALLAGYAVAGDMDGALALFGGMR 149
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ ++ R+V D + + + + + ++ Y K G E+AR V D +
Sbjct: 188 TWTVLVQGYVCAGDMETAREVFDRMPAR----NAFVWSSMVTGYFKAGDAEEARAVFDRI 243
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P RN L +WNA+IAG A + +A+ F M + PD T+ SLL AC
Sbjct: 244 PTRN------LVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSAC 293
>gi|242059435|ref|XP_002458863.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
gi|241930838|gb|EES03983.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
Length = 544
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 77/139 (55%), Gaps = 11/139 (7%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+AL AFD + R++P T A L+S C+ L SL+ G+KVHD I + + + N
Sbjct: 266 KALEAFDSMLQE---RVKPDEFTMASLLSACAQLGSLEQGKKVHDFINREHIRKNHFVLN 322
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG L AR + D M +N WN +I+ +AS ++EA+ LF +M
Sbjct: 323 GLIDMYAKCGDLVYARYIFDGMRWKNT------ECWNTMISALASHGRSDEALHLFFQME 376
Query: 143 DRELIPDGLTVRSLLCACT 161
P+ +TV ++L ACT
Sbjct: 377 HSGQTPNTITVLAVLGACT 395
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 6/82 (7%)
Query: 61 LGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNA 120
LG+ +H L S D+++ I++MY KCG+L DAR DEMP RNVI S+NA
Sbjct: 74 LGKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVI------SYNA 127
Query: 121 IIAGVASPSNANEAMSLFSEMR 142
++AG A+ + + A++LF MR
Sbjct: 128 LLAGYAAAGDMDGALALFGGMR 149
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ S ++ R+V D + + + + + ++ Y K G+ E+A+ V +
Sbjct: 188 TWTVLVHGYVSAGDMEAAREVFDRMPAR----NAFVWSSMVTGYFKAGNAEEAQAVFHRI 243
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P RN L +WNA+IAG A + +A+ F M + PD T+ SLL AC
Sbjct: 244 PTRN------LVNWNALIAGYAQIGCSEKALEAFDSMLQERVKPDEFTMASLLSAC 293
>gi|326522825|dbj|BAJ88458.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 551
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 11/139 (7%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
EALV F +Q ++P+ T ++S C+ L +L+LGR +H+++ + V +
Sbjct: 208 EALVLFREMQAKG---LKPTSVTVTSVLSACALLGALELGRWIHEYVRKAGLDSLVKVNT 264
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MYGKCGSLEDA V M ES D +W+ +I A+ S EA+SLF EM+
Sbjct: 265 ALIDMYGKCGSLEDAIDVFQGM------ESRDRQAWSVMIVAYANHSYGREAISLFEEMK 318
Query: 143 DRELIPDGLTVRSLLCACT 161
+ + PD +T +L AC+
Sbjct: 319 KQGIRPDAVTFLGVLYACS 337
Score = 65.1 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Query: 41 IRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ P TY L+ C++ R+ + GR+ H + + + + ++NMY +CG AR
Sbjct: 119 VAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKTGAADHEYVLPTLINMYAECGDARSAR 178
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+ +P + + S+NA+I S EA+ LF EM+ + L P +TV S+L
Sbjct: 179 AMFGRVPNGDCV-----VSYNAMITAAVRSSRPGEALVLFREMQAKGLKPTSVTVTSVLS 233
Query: 159 AC 160
AC
Sbjct: 234 AC 235
>gi|302791537|ref|XP_002977535.1| hypothetical protein SELMODRAFT_106750 [Selaginella moellendorffii]
gi|300154905|gb|EFJ21539.1| hypothetical protein SELMODRAFT_106750 [Selaginella moellendorffii]
Length = 545
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/105 (39%), Positives = 61/105 (58%), Gaps = 3/105 (2%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++S S R L+ GRK+H ++ S ++ + N +++MY KCGSLEDAR M
Sbjct: 114 TFLAILSAVSGARGLEEGRKIHTQVVESGYSGELSVGNALIDMYSKCGSLEDARKTFAGM 173
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD 149
++N PDL W A+IA A + EA LF +M+D+ L PD
Sbjct: 174 DEKN---KPDLVLWTAMIAAYAGHGDYKEAFELFQQMQDQGLKPD 215
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQP-DVVLQNYILNMYGKCGSLEDARVVSDEMPQR 107
++ CS++ L GR V+ + S + D+VL N + M+G CGSL +AR + + + R
Sbjct: 291 VLDACSNVSGLAQGRLVYKQFVESGAHELDLVLGNAVARMFGSCGSLREAREIFESLAAR 350
Query: 108 NVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+V+ SWN +I A + E++ LF M + + PD +T +L AC+
Sbjct: 351 DVV------SWNCLITAYAQHGSFEESLRLFRRMLEECVKPDEVTFVGVLSACS 398
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 7/113 (6%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
+ C L G +H I + Q D+V+ N ++NMYGKCG+LE A + +P+ +
Sbjct: 17 LGACQDPSRLAAGVGIHSRITEAGLQGDIVISNALVNMYGKCGALESACEIFHGVPRNDA 76
Query: 110 IESPDLASWNAIIAGVASPSNA-NEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I SWN +I+ A ++ EA+ LF M L P+ +T ++L A +
Sbjct: 77 I------SWNGMISLYAQDGHSREEALELFRRMHGEGLTPNKVTFLAILSAVS 123
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 13/112 (11%)
Query: 58 SLQLGRKVHDHILSSKSQPD---VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPD 114
+ +L +++ D L +PD V + N I++MYGKCG++ DAR + D+M +R D
Sbjct: 200 AFELFQQMQDQGL----KPDKSLVSIGNAIVHMYGKCGNVADARKMFDKMKER------D 249
Query: 115 LASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
SW +IA A EA+ +F M + PD +T+ ++L AC++ S +
Sbjct: 250 TVSWTTMIAVYAEHGYDREALQIFKVMLLESVAPDKVTLINVLDACSNVSGL 301
>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 81/143 (56%), Gaps = 11/143 (7%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
N NEAL F LQ ++P+ T ++S+C+ L SL LGR +H+++ V
Sbjct: 192 NRANEALALFRELQE---IGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYV 248
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ +++MY KCGSL+DA V +MP+R D +W+AII A+ + +A+S+
Sbjct: 249 KVNTTLIDMYAKCGSLDDAVNVFRDMPKR------DTQAWSAIIVAYATHGDGFQAISML 302
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
+EM+ ++ PD +T +L AC+
Sbjct: 303 NEMKKEKVQPDEITFLGILYACS 325
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 77/145 (53%), Gaps = 9/145 (6%)
Query: 16 SQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQ 75
+QP L+N +A + + N R+ CL S +++L G+++H +
Sbjct: 88 TQPNIVLFNT--MARGYARLNDPLRMITHFRRCL-RLVSKVKALAEGKQLHCFAVKLGVS 144
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
++ + ++NMY CG ++ +R V D+ I+ P + ++NAII +A + ANEA+
Sbjct: 145 DNMYVVPTLINMYTACGDIDASRRVFDK------IDEPCVVAYNAIIMSLARNNRANEAL 198
Query: 136 SLFSEMRDRELIPDGLTVRSLLCAC 160
+LF E+++ L P +T+ +L +C
Sbjct: 199 ALFRELQEIGLKPTDVTMLVVLSSC 223
>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 579
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 77/139 (55%), Gaps = 10/139 (7%)
Query: 28 VAFDFLQ--NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
VA + + F +T ++ C+ L L+LG + H HI+ K D++L N ++
Sbjct: 195 VALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIV--KYDQDLILNNALV 252
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+MY KCGSLEDAR V ++M +R+VI +W+ +I+G+A + EA+ LF M+
Sbjct: 253 DMYCKCGSLEDARRVFNQMKERDVI------TWSTMISGLAQNGYSQEALKLFELMKSSG 306
Query: 146 LIPDGLTVRSLLCACTSPS 164
P+ +T+ +L AC+
Sbjct: 307 TKPNYITIVGVLFACSHAG 325
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+TY+ LI C S R++ G + H+ + QP + L N ++NMY K L DA + D+
Sbjct: 14 ATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLFDQ 73
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
MPQRNVI SW +I+ + +A+ L M + P+ T S+L AC
Sbjct: 74 MPQRNVI------SWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGM 127
Query: 164 SNVLYL 169
S+V L
Sbjct: 128 SDVRML 133
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP+ TY+ ++ C+ + + R +H I+ + DV +++ +++++ K G EDA
Sbjct: 110 VRPNVYTYSSVLRACNGMSDV---RMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDAL 166
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V DEM + D WN+II G A S ++ A+ LF M+ I + T+ S+L
Sbjct: 167 SVFDEMV------TGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLR 220
Query: 159 ACTS 162
ACT
Sbjct: 221 ACTG 224
>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 597
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 72/117 (61%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S C L SL +G +++D + + +++++N L+M+ KCGS E ARV+ D+M
Sbjct: 212 TVVSMLSACGQLGSLDIGEEIYDRARKEEIECNIIVENARLDMHLKCGSTEAARVLFDDM 271
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
QRNV+ SW+ +I G A ++ EA++LF+ M++ L P+ +T +L AC+
Sbjct: 272 KQRNVV------SWSTMIVGYAMNGDSGEALALFTMMQNEGLRPNYVTFLGVLSACS 322
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 8/122 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP TY ++ S L L G +H H+L + + ++ ++ MY K G L A
Sbjct: 105 VRPDEFTYPFVVKAISQLGVLPCGVSLHAHVLKNGFECLGIVATELVMMYMKFGELSSAE 164
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+ + M + DL +WNA IA N+ A+ F++M + D TV S+L
Sbjct: 165 FLFESM------QVKDLVAWNAFIAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLS 218
Query: 159 AC 160
AC
Sbjct: 219 AC 220
>gi|359491917|ref|XP_003634341.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 767
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 6/131 (4%)
Query: 36 NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
N FR TYA ++S C+S+ L+ G +H I+ + DV +++MY KCG LE
Sbjct: 252 NQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLE 311
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
AR V D + + N + SW ++I GVA EA+ LF++MR+ + D T+ +
Sbjct: 312 SARQVFDGLTEHNAV------SWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLAT 365
Query: 156 LLCACTSPSNV 166
+L C S ++
Sbjct: 366 VLGVCLSQKDI 376
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 8/97 (8%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA-RVVSDEMPQRN 108
+ C+SLRS+ + RK+H ++ + + LQN++LNMY CG + DA RV
Sbjct: 1 MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGG------ 54
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
I P++ SWN +I+G A EA LF +M +R+
Sbjct: 55 -IMFPNVYSWNTMISGFADSGQMREAEKLFEKMPERD 90
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++ C S + + +G ++H H ++ V + N ++ MY KCG + A + M
Sbjct: 362 TLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELM 421
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
P R++I SW A+I + + +A F +M +R +I
Sbjct: 422 PIRDII------SWTAMITAFSQAGDVEKAREYFDKMPERNVI 458
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ IS C+ L L LG ++ +V + N ++ MY +CG +E+A+ + +
Sbjct: 494 TFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSI 553
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+N L SWNA++AG A + + +F +M + +PD ++ S+L
Sbjct: 554 VMKN------LVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVL 600
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P +++C++ SL L+L ++H D ++ +L+MY KCG+++ A+ V
Sbjct: 127 PFSFSCVMKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFC 186
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
P +P L WN++I G + + +A+ LF++M +R+ +
Sbjct: 187 RTP------NPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTV 225
>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
Length = 861
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 11/145 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
NE+LV F+ ++ + P A ++ C+ L ++ R + D+I K Q DV+L
Sbjct: 241 NESLVLFEKMREEG---VVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILG 297
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+++MY KCG +E AR + D M ++NVI SW+A+IA +A+ LF M
Sbjct: 298 TAMIDMYAKCGCVESAREIFDRMEEKNVI------SWSAMIAAYGYHGQGRKALDLFRMM 351
Query: 142 RDRELIPDGLTVRSLLCACTSPSNV 166
++PD +T+ SLL AC + N+
Sbjct: 352 LSSGMLPDKITLASLLYACINCRNL 376
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 76/140 (54%), Gaps = 11/140 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
NE+LV FD ++ + P A ++ C+ L ++ R + D+I K Q DV+L
Sbjct: 471 NESLVLFDKMREEG---VVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILG 527
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+++M+ KCG +E AR + D M ++NVI SW+A+IA +A+ LF M
Sbjct: 528 TAMIDMHAKCGCVESAREIFDRMEEKNVI------SWSAMIAAYGYHGQGRKALDLFPMM 581
Query: 142 RDRELIPDGLTVRSLLCACT 161
++P+ +T+ SLL AC+
Sbjct: 582 LRSGILPNKITLVSLLYACS 601
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 29/121 (23%)
Query: 42 RPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP Y +I C L++LQ+ +++MY KC +EDAR
Sbjct: 176 RPDNYTLPFVIRACRDLKNLQMA---------------------LVDMYVKCREIEDARF 214
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ D+M +R DL +W +I G A ANE++ LF +MR+ ++PD + + +++ A
Sbjct: 215 LFDKMQER------DLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFA 268
Query: 160 C 160
C
Sbjct: 269 C 269
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 34/144 (23%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A L+ C + R+L R+VH ++++ N +++ Y +L+DA + D M
Sbjct: 362 TLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGM 421
Query: 105 PQRNVIESPDLASWNAIIAGVASP----------------------------SNANEAMS 136
R D SW+ ++ G A NANE++
Sbjct: 422 CVR------DSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLV 475
Query: 137 LFSEMRDRELIPDGLTVRSLLCAC 160
LF +MR+ ++PD + + +++ AC
Sbjct: 476 LFDKMREEGVVPDKVAMVTVVFAC 499
Score = 42.7 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 22/164 (13%)
Query: 5 LKTQLRFTFYNSQPIQNLYN--EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLG 62
++TQ R Q NL+N E F FLQ R+ P Y + C R+L
Sbjct: 52 IETQFR------QTSLNLHNREEESSKFHFLQ-----RLNPKFYISALVNC---RNLTQV 97
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
R+VH ++V+ N ++ Y +L+DA + D M R D SW+ ++
Sbjct: 98 RQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVR------DSVSWSVMV 151
Query: 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
G A + F E+ PD T+ ++ AC N+
Sbjct: 152 GGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNL 195
>gi|115488220|ref|NP_001066597.1| Os12g0289800 [Oryza sativa Japonica Group]
gi|77554360|gb|ABA97156.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113649104|dbj|BAF29616.1| Os12g0289800 [Oryza sativa Japonica Group]
Length = 756
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 83/144 (57%), Gaps = 8/144 (5%)
Query: 19 IQN-LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+QN L+ EAL F ++ + TYAC +S ++L +LQ+GR+ H ++ + D
Sbjct: 426 VQNGLFVEALQHFMLMRRDAK-SADWCTYACCLSASANLATLQIGRQFHSLLVRTGFISD 484
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
N +++ Y KCG + +AR V DEM V++ D+ SWNA+I G AS N +E +++
Sbjct: 485 SSPGNALISAYAKCGRMLEARQVFDEM----VVQ--DIVSWNALIDGYASNGNGSEVIAV 538
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F EM + PD +T+ +L AC+
Sbjct: 539 FREMEANSVRPDEITLVVVLSACS 562
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D V N +++ Y +CG L++A V+ +MP + D+ SWN +IAG A +A S
Sbjct: 352 DAVCWNTMISGYVQCGMLDEAMVLFQQMPNK------DMISWNTMIAGCAQGGQIRKAAS 405
Query: 137 LFSEMRDRELI 147
+F +M+ R +
Sbjct: 406 IFRKMKRRNTV 416
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++ ++S L L R++ D + K N +++ Y K G EDA + EM
Sbjct: 106 SWTIMVSCYVRAGELTLARELLDRMPGEKC---AACYNTMISGYAKNGRFEDAIALLQEM 162
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
P +PD+ SWN+++ G+ + ++ F EM D++L+
Sbjct: 163 P------APDIVSWNSVLGGLIRNEEISRSVQFFDEMPDKDLV 199
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
P+V+ ++N Y + G + +AR + D MP+RNV+ +WN +++G S A
Sbjct: 227 PNVISWVNLVNGYCQAGRMGEARELFDRMPERNVV------AWNVLLSGYVQFSQVEAAY 280
Query: 136 SLFSEMRDRELI 147
+LF EM ++ I
Sbjct: 281 NLFIEMPEKNSI 292
Score = 38.9 bits (89), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V N L + G L AR + +EMP+RNV+ S+NA+++ +A EA L
Sbjct: 11 VFRSNQELTSLARSGQLAAARRLFEEMPRRNVV------SYNAMVSALAHHGRLAEARRL 64
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNV 166
F EM R + ++ +++ AC+ V
Sbjct: 65 FDEMPRR----NPVSWNTMMVACSQHGRV 89
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+LS +V + +++ Y K ++DAR + D + R D WN +I+G
Sbjct: 313 VLSKMPSDNVGAKTALMHGYLKSNLIDDARQLFDGIVVR------DAVCWNTMISGYVQC 366
Query: 129 SNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+EAM LF +M ++++I + +++ C +
Sbjct: 367 GMLDEAMVLFQQMPNKDMI----SWNTMIAGCAQGGQI 400
Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+VV N +++ G L +AR + DEMP+RN + SWN ++ + +A
Sbjct: 41 NVVSYNAMVSALAHHGRLAEARRLFDEMPRRNPV------SWNTMMVACSQHGRVEDARG 94
Query: 137 LFSEMRDR 144
LF M R
Sbjct: 95 LFDAMPAR 102
>gi|359497810|ref|XP_003635652.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like, partial [Vitis vinifera]
Length = 262
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 79/140 (56%), Gaps = 12/140 (8%)
Query: 26 ALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPD-VVLQN 82
L A D +Q + + P + Y+ L+ C+ L ++ GR VH H++ S + +VLQN
Sbjct: 71 GLYALDLIQRGS---LVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQN 127
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
I+NMY KCG L+DAR + DEMP + D+ +W A+IAG + + +A+ LF +M
Sbjct: 128 IIVNMYAKCGCLDDARRMFDEMPTK------DMVTWTALIAGFSQNNRPRDALLLFPQML 181
Query: 143 DRELIPDGLTVRSLLCACTS 162
L P+ T+ SLL A S
Sbjct: 182 RLGLQPNHFTLSSLLKASGS 201
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + L+ S L G ++H L Q V + + +++MY +CG ++ A++ D M
Sbjct: 191 TLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGM 250
Query: 105 PQRNVIESPDLASWNAII 122
P ++ + SWNA+I
Sbjct: 251 PTKSEV------SWNALI 262
>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
gi|194689034|gb|ACF78601.1| unknown [Zea mays]
gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
Length = 606
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 73/137 (53%), Gaps = 7/137 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EALV F +Q P T ++S C+ L +LQLGR +HD++ V + +
Sbjct: 217 EALVLFREMQAK-GLNPTPVTVISVLSACALLGALQLGRWLHDYVRKLGLGSLVKVSTAL 275
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MY KCGSLEDA V M ES D +W+ +I A+ EA+SLF EM+ +
Sbjct: 276 VDMYAKCGSLEDAIAVFQGM------ESRDRQAWSVMIVAYANHGYGREAISLFEEMKKQ 329
Query: 145 ELIPDGLTVRSLLCACT 161
+ PD +T LL AC+
Sbjct: 330 GMKPDDITFLGLLYACS 346
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 41 IRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ P TY L+ C++ R+ + GR+ H + + ++ ++NMY +CG AR
Sbjct: 129 VAPDTYTFVSLLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAAR 188
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V V+ S+NA+IA S EA+ LF EM+ + L P +TV S+L
Sbjct: 189 VTFGRADGDCVV------SYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLS 242
Query: 159 AC 160
AC
Sbjct: 243 AC 244
>gi|222616932|gb|EEE53064.1| hypothetical protein OsJ_35805 [Oryza sativa Japonica Group]
Length = 841
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 83/144 (57%), Gaps = 8/144 (5%)
Query: 19 IQN-LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+QN L+ EAL F ++ + TYAC +S ++L +LQ+GR+ H ++ + D
Sbjct: 426 VQNGLFVEALQHFMLMRRDAK-SADWCTYACCLSASANLATLQIGRQFHSLLVRTGFISD 484
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
N +++ Y KCG + +AR V DEM V++ D+ SWNA+I G AS N +E +++
Sbjct: 485 SSPGNALISAYAKCGRMLEARQVFDEM----VVQ--DIVSWNALIDGYASNGNGSEVIAV 538
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F EM + PD +T+ +L AC+
Sbjct: 539 FREMEANSVRPDEITLVVVLSACS 562
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D V N +++ Y +CG L++A V+ +MP +++I SWN +IAG A +A S
Sbjct: 352 DAVCWNTMISGYVQCGMLDEAMVLFQQMPNKDMI------SWNTMIAGCAQGGQIRKAAS 405
Query: 137 LFSEMRDRELI 147
+F +M+ R +
Sbjct: 406 IFRKMKRRNTV 416
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++ ++S L L R++ D + K N +++ Y K G EDA + EM
Sbjct: 106 SWTIMVSCYVRAGELTLARELLDRMPGEKC---AACYNTMISGYAKNGRFEDAIALLQEM 162
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
P +PD+ SWN+++ G+ + ++ F EM D++L+
Sbjct: 163 P------APDIVSWNSVLGGLIRNEEISRSVQFFDEMPDKDLV 199
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
P+V+ ++N Y + G + +AR + D MP+RNV+ +WN +++G S A
Sbjct: 227 PNVISWVNLVNGYCQAGRMGEARELFDRMPERNVV------AWNVLLSGYVQFSQVEAAY 280
Query: 136 SLFSEMRDRELI 147
+LF EM ++ I
Sbjct: 281 NLFIEMPEKNSI 292
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V N L + G L AR + +EMP+RNV+ S+NA+++ +A EA L
Sbjct: 11 VFRSNQELTSLARSGQLAAARRLFEEMPRRNVV------SYNAMVSALAHHGRLAEARRL 64
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNV 166
F EM R + + +++ AC+ V
Sbjct: 65 FDEMPRRNPV----SWNTMMVACSQHGRV 89
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+LS +V + +++ Y K ++DAR + D + R+ + WN +I+G
Sbjct: 313 VLSKMPSDNVGAKTALMHGYLKSNLIDDARQLFDGIVVRDAV------CWNTMISGYVQC 366
Query: 129 SNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+EAM LF +M ++++I + +++ C +
Sbjct: 367 GMLDEAMVLFQQMPNKDMI----SWNTMIAGCAQGGQI 400
Score = 35.8 bits (81), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+VV N +++ G L +AR + DEMP+RN + SWN ++ + +A
Sbjct: 41 NVVSYNAMVSALAHHGRLAEARRLFDEMPRRNPV------SWNTMMVACSQHGRVEDARG 94
Query: 137 LFSEMRDR 144
LF M R
Sbjct: 95 LFDAMPAR 102
>gi|359481504|ref|XP_002274656.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Vitis vinifera]
Length = 538
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 69/116 (59%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ C IS +++ +L +GR H + + DV + N +++ Y KCGS+E++ +V + +
Sbjct: 245 TFPCAISAVANIAALGMGRSFHGSAVKFLGKFDVFIGNSLVSFYAKCGSMEESLLVFNTL 304
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P++N++ SWNA+I G A+ EA+ F +M+D L P+ +T+ LL AC
Sbjct: 305 PKKNIV------SWNALICGYANHGRGMEAIYFFEKMQDTGLRPNSVTLLGLLLAC 354
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 77/180 (42%), Gaps = 42/180 (23%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y+ A F I+P+ ++ +I + ++L+ L GR++H + + +V +
Sbjct: 89 YHHHEEAIYFFSRMLALNIKPNQFSFGTVIPSSTALQDLNSGRQLHACAIKMGLESNVFV 148
Query: 81 QNYILNMYGKCGSL-------------------------------EDARVVSDEMPQRNV 109
+ +++ Y K S+ +DA + +MP+RNV
Sbjct: 149 GSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFRKMPERNV 208
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYL 169
+ SWNA+I+G + EA++LF M +P+ R+ CA ++ +N+ L
Sbjct: 209 V------SWNAMISGYSQMGYNEEAVNLFVVMLREGTLPN---ERTFPCAISAVANIAAL 259
>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Brachypodium distachyon]
Length = 747
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 6/146 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L NEA+ + +Q + + T+ ++ S L +LQ G ++H + DV +
Sbjct: 351 GLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYV 410
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
++++Y KCG L +A ++ ++MP+R+ WNAII+G+ + EA++LFS
Sbjct: 411 GTCLIDLYAKCGKLAEAMLLFEKMPRRST------GPWNAIISGLGVHGHGAEALTLFSR 464
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M+ + PD +T SLL AC+ V
Sbjct: 465 MQQEGIKPDHVTFVSLLAACSHAGLV 490
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + ++ C L L +H + + ++ + N ++++YGK G LE+A+ V M
Sbjct: 171 TVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGM 230
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
E DL +WN+II+G A+ +F MR + PD LT+ SL A
Sbjct: 231 ------ECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASA 279
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+P V +++ Y + G + +A V DEM +R D+ +WNA+++G+ + A EA
Sbjct: 100 RPSVFTSGSLVHAYLRFGRISEAYKVFDEMSER------DVPAWNAMLSGLCRNARAAEA 153
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCACT 161
+ LF M + D +TV S+L C
Sbjct: 154 VGLFGRMVGEGVAGDTVTVSSVLPMCV 180
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D++ N I++MY K ++E A+ + D MP + D SWN +I G ANEA+
Sbjct: 305 DIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQ------DSVSWNTLITGYMQNGLANEAVE 358
Query: 137 LFSEMRDRE 145
+ M+ E
Sbjct: 359 RYGHMQKHE 367
>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Glycine max]
Length = 722
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 80/148 (54%), Gaps = 8/148 (5%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD-V 78
++L + L F +Q N FR ++ C+ S CS+L S LG++VH + S + V
Sbjct: 324 EDLSEDGLWCFREMQRN-GFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRV 382
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N ++ MY KCG++ DAR V D MP+ N + S N++IAG A E++ LF
Sbjct: 383 SVNNALVAMYSKCGNVHDARRVFDTMPEHNTV------SLNSMIAGYAQHGVEVESLRLF 436
Query: 139 SEMRDRELIPDGLTVRSLLCACTSPSNV 166
M ++++ P+ +T ++L AC V
Sbjct: 437 ELMLEKDIAPNSITFIAVLSACVHTGKV 464
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 18/125 (14%)
Query: 41 IRPSTY-----ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
I PSTY L S C SL + Q + + P+V N ++N Y K +
Sbjct: 40 IPPSTYLSNHFTLLYSKCGSLHNAQTSFHLTQY-------PNVFSYNTLINAYAKHSLIH 92
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
AR V DE+PQ PD+ S+N +IA A + LF E+R+ L DG T+
Sbjct: 93 IARRVFDEIPQ------PDIVSYNTLIAAYADRGECGPTLRLFEEVRELRLGLDGFTLSG 146
Query: 156 LLCAC 160
++ AC
Sbjct: 147 VITAC 151
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 11/125 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC-GSLEDARVVSDE 103
T A +++ + ++ L GR+ H ++ S + + + ++++Y KC GS+ + R V +E
Sbjct: 245 TMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEE 304
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANE-AMSLFSEMRDRELIPDGLTVRSLLCAC-- 160
I +PDL WN +I+G + + +E + F EM+ PD + + AC
Sbjct: 305 ------ITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSN 358
Query: 161 -TSPS 164
+SPS
Sbjct: 359 LSSPS 363
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + +I+ C + L R++H ++ + N +L Y + G L +AR V EM
Sbjct: 143 TLSGVITACGD--DVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREM 200
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ D SWNA+I EA+ LF EM R L D T+ S+L A T
Sbjct: 201 GEGG---GRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFT 254
>gi|388522181|gb|AFK49152.1| unknown [Lotus japonicus]
Length = 276
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 6/123 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
S Y L+ C SL+ G++VH+ + S +V + N ++ MYGKCG ++DAR V D+
Sbjct: 124 SVYLALLKLCEDSGSLESGKRVHEFLKKSSFNGEVEVNNRLIGMYGKCGGMKDARRVFDK 183
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
MP+RN L+SW +I+G ++ + +F +M+ + PDG T +L AC
Sbjct: 184 MPERN------LSSWCLMISGYTVNGRGDDGLLVFQQMKQAGVEPDGETFALVLAACARA 237
Query: 164 SNV 166
V
Sbjct: 238 EAV 240
>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
Length = 724
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 79/140 (56%), Gaps = 12/140 (8%)
Query: 26 ALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPD-VVLQN 82
L A D +Q + + P + Y+ L+ C+ L ++ GR VH H++ S + +VLQN
Sbjct: 71 GLYALDLIQRGS---LVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQN 127
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
I+NMY KCG L+DAR + DEMP + D+ +W A+IAG + + +A+ LF +M
Sbjct: 128 IIVNMYAKCGCLDDARRMFDEMPTK------DMVTWTALIAGFSQNNRPRDALLLFPQML 181
Query: 143 DRELIPDGLTVRSLLCACTS 162
L P+ T+ SLL A S
Sbjct: 182 RLGLQPNHFTLSSLLKASGS 201
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 68/124 (54%), Gaps = 6/124 (4%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
NF+ TY+ + S C+S+ +L+ G+ VH H++ S + + N +L+MY K GS++DA
Sbjct: 285 NFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDA 344
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+ V D + + PD+ SWN ++ G A E + F +M + P+ ++ +L
Sbjct: 345 KRVFDRLVK------PDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVL 398
Query: 158 CACT 161
AC+
Sbjct: 399 TACS 402
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 20/163 (12%)
Query: 14 YNSQPIQNLYNEALVAFDFLQNNT------------NFRIRPS--TYACLISTCSSLRSL 59
++ P +++ + F QNN ++P+ T + L+ S L
Sbjct: 146 FDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGL 205
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
G ++H L Q V + + +++MY +CG ++ A++ D MP ++ + SWN
Sbjct: 206 DPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEV------SWN 259
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
A+I+G A A+ L +M+ + P T S+ AC S
Sbjct: 260 ALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACAS 302
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++ C+++ CS L G + + K +PDV +++ G+ G L+ A EM
Sbjct: 393 SFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREM 452
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
P IE P A W A++ A + N + +++ R EL P R LL
Sbjct: 453 P----IE-PTAAVWGALLG--ACRMHKNMELGVYAAERAFELDPHDSGPRMLL 498
>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 882
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 71/122 (58%), Gaps = 8/122 (6%)
Query: 41 IRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ P ++ + L++ C+SL + + G++VH H++ + DV N ++ Y KCGS+EDA
Sbjct: 506 LEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDAD 565
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+ +P+R ++ SW+A+I G+A + A+ LF M D + P+ +T+ S+L
Sbjct: 566 MAFSGLPERGIV------SWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLS 619
Query: 159 AC 160
AC
Sbjct: 620 AC 621
Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 71/121 (58%), Gaps = 8/121 (6%)
Query: 42 RPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP+ + +C+++ C+ R L+ GR+VH ++ + + DV N +++MY K G +E A
Sbjct: 202 RPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAAT 261
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V ++MP + D+ SWNA I+G + + + A+ L +M+ L+P+ T+ S+L A
Sbjct: 262 VFEKMP------AADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKA 315
Query: 160 C 160
C
Sbjct: 316 C 316
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + ++ C+ + LGR++H ++ + + D + +++MY K G L+DAR V D M
Sbjct: 308 TLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFM 367
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
P+R DL WNA+I+G + E +SLF MR L
Sbjct: 368 PRR------DLILWNALISGCSHDGRHGEVLSLFHRMRKEGL 403
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P T ++ + RSL G +H H+L KS N++L +Y +C AR V D
Sbjct: 4 PETIGSALARFGTSRSLFAGAHLHSHLL--KSGLLAGFSNHLLTLYSRCRLPSAARAVFD 61
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
E+P P SW++++ ++ +A+ F MR R
Sbjct: 62 EIP------DPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGR 97
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
+ + +T A ++ + +S ++ R+VH D + N +++ Y KCG L+ A
Sbjct: 404 DLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYA 463
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
V E S D+ S ++ ++ + +A+ LF +M + L PD + SLL
Sbjct: 464 IKVFKES------RSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLL 517
Query: 158 CACTSPS 164
ACTS S
Sbjct: 518 NACTSLS 524
Score = 42.4 bits (98), Expect = 0.061, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM----PQRNVIESPD 114
++ G +VH ++++ DV + N ++ +YG G +++AR + DE +RN +
Sbjct: 116 VRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAV---- 171
Query: 115 LASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
SWN +I+ + +A+ +F EM P+ ++ ACT ++
Sbjct: 172 --SWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDL 221
>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
Length = 421
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 79/138 (57%), Gaps = 7/138 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILS-SKSQPDVVLQN 82
+E L +F + + + +T ++S C+ L + G+ VH + + ++ DV ++N
Sbjct: 116 SEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKN 175
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MYGKCG++E A V + +R DL SWN +I G+A+ + EA++LF EM+
Sbjct: 176 ALIDMYGKCGAIEIAMEVFKGIKRR------DLISWNTMINGLAAHGHGTEALNLFHEMK 229
Query: 143 DRELIPDGLTVRSLLCAC 160
+ + PD +T +LCAC
Sbjct: 230 NSGISPDKVTFVGVLCAC 247
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DV+ N +L Y G +E V D+MP+RNV SWN +I G A +E +
Sbjct: 67 DVMSWNTVLEGYANIGDMEACERVFDDMPERNVF------SWNGLIKGYAQNGRVSEVLG 120
Query: 137 LFSEMRDR-ELIPDGLTVRSLLCACTS 162
F M D ++P+ T+ +L AC
Sbjct: 121 SFKRMVDEGSVVPNDATMTLVLSACAK 147
>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Glycine max]
Length = 609
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 85/149 (57%), Gaps = 16/149 (10%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLI--STCSSLRSLQLGRKVHDHILSS 72
NS+P NEAL F LQ + ++P+ L+ S+C+ L +L LGR +H+++ +
Sbjct: 214 NSRP-----NEALALFRELQESG---LKPTDVTMLVALSSCALLGALDLGRWIHEYVKKN 265
Query: 73 KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNAN 132
V + +++MY KCGSL+DA V +MP+R D +W+A+I A+ + +
Sbjct: 266 GFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRR------DTQAWSAMIVAYATHGHGS 319
Query: 133 EAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+A+S+ EM+ ++ PD +T +L AC+
Sbjct: 320 QAISMLREMKKAKVQPDEITFLGILYACS 348
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ L+ C+ L++L+ G+++H + ++ + ++NMY C ++ AR V D+
Sbjct: 137 TFSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDK- 195
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
I P + ++NAII A S NEA++LF E+++ L P +T+ L +C
Sbjct: 196 -----IGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSC 246
Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI--LNMYGKCGSLEDARVVSDEMPQ 106
LI C+SLR L +++ + + + VL I S++ A + D++PQ
Sbjct: 41 LIPKCTSLREL---KQIQAYTIKTHQNNPTVLTKLINFCTSNPTIASMDHAHRMFDKIPQ 97
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
PD+ +N + G A + A+ L S++ L+PD T SLL AC
Sbjct: 98 ------PDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKAC 145
>gi|255540253|ref|XP_002511191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550306|gb|EEF51793.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 70/124 (56%), Gaps = 6/124 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A +I + L + +GR++H L + D+ + +++MYGKCGS+EDA V DEM
Sbjct: 273 TFATMIQASAGLGWISIGRQLHSCALKMEVGDDIFVSCALIDMYGKCGSIEDAHCVFDEM 332
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P+RN++ +WN IIAG A + EA+ + EMR+ + D T ++ C +
Sbjct: 333 PERNIV------AWNTIIAGYALHGYSEEALDMVYEMRNSGVRMDHFTFSIVVRICARLA 386
Query: 165 NVLY 168
++ Y
Sbjct: 387 SLNY 390
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+ Y EAL F+ L+ + F + STY L+S C LRS+ ++V +++LS+ +PD
Sbjct: 146 LHGKYREALELFEILELDGGFDVGSSTYDALVSACIGLRSIPGVKRVLNYMLSNGFEPDQ 205
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N +L + KCG + AR DEMP+RN L SWN II+G+ + EA LF
Sbjct: 206 YMANRVLLVQVKCGMMIHARKWFDEMPERN------LVSWNTIISGLVDMGDYKEAFRLF 259
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 75/139 (53%), Gaps = 6/139 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y+E + + N+ R+ T++ ++ C+ L SL ++ H +L D+V +
Sbjct: 352 YSEEALDMVYEMRNSGVRMDHFTFSIVVRICARLASLNYAKQAHASLLRHGFGSDIVANS 411
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++ Y K G +E AR V D+MP +NVI SWNA+IAG + ++A+ LF +M
Sbjct: 412 ALVDFYSKWGRVETARHVFDQMPCKNVI------SWNALIAGYGNHGKGDDAIELFEQML 465
Query: 143 DRELIPDGLTVRSLLCACT 161
+ P+ +T ++L AC+
Sbjct: 466 QERIRPNHVTFLAVLSACS 484
>gi|302798965|ref|XP_002981242.1| hypothetical protein SELMODRAFT_113974 [Selaginella moellendorffii]
gi|300151296|gb|EFJ17943.1| hypothetical protein SELMODRAFT_113974 [Selaginella moellendorffii]
Length = 734
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 7/122 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
+A ++ C+ L L+ GR++H +L S S DVV+QN ++ MY +CGS+ + + D M
Sbjct: 115 FASALAACAGLGDLEQGREIHKRVLESPSIASDVVVQNSLVTMYARCGSVLEGIKIFDAM 174
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P++N++ SWNA+I+ +A+ L+ M+ L P+G SLL AC S
Sbjct: 175 PRKNLV------SWNAMISAFVQCDYPEQALELYHRMKRERLEPNGFVFASLLTACASLG 228
Query: 165 NV 166
N+
Sbjct: 229 NL 230
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 84/163 (51%), Gaps = 20/163 (12%)
Query: 14 YNSQPIQNL--YNEALVAF----------DFLQNNTNFRIRPS--TYACLISTCSSLRSL 59
+++ P +NL +N + AF + R+ P+ +A L++ C+SL +L
Sbjct: 171 FDAMPRKNLVSWNAMISAFVQCDYPEQALELYHRMKRERLEPNGFVFASLLTACASLGNL 230
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
+LG +H I S Q D+V++N ++NMY KCG +++A V + R+V +W
Sbjct: 231 ELGSSIHQRITSLGLQRDIVMENALINMYSKCGCMDEALEVFSGLATRDVF------TWT 284
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
++IAG A +EA + + MR + P T +LL AC++
Sbjct: 285 SMIAGYAQLGFGSEAFAFYDGMRRDCVSPTSATFVALLSACST 327
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
S YA L+ C S R++ GR++HD + S L+ ++ MY KCG L DA+ DE
Sbjct: 15 SRYARLLQECCSRRNVSEGRRLHDDLRRSGYGDSSYLRRCVVQMYAKCGCLADAKAAFDE 74
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
+ +N D WN +I+G A EA+ LF +M ++ P+G S L AC
Sbjct: 75 IADKN-----DFV-WNLMISGYARSGKNREALELFHKM---DIPPNGFIFASALAACAGL 125
Query: 164 SNV 166
++
Sbjct: 126 GDL 128
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 68/118 (57%), Gaps = 10/118 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T++ ++ CS+L GR+VH IL+++ + L N ++NMY +CGS+ DAR + +
Sbjct: 516 TFSSVLQACSNLED---GREVHARILAAQGGKMSDFLGNGLINMYARCGSMRDARQIFES 572
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
M + + I SW+AI+ A ++ + + M + ++PDG+T+ ++L +C+
Sbjct: 573 MDRSSRI------SWSAIMTLCARHGQHDDIIDTYRLMVNEGVVPDGVTLIAILNSCS 624
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ + CS R +L + + + I S ++ +++ Y KCG +E+AR + D M
Sbjct: 415 TFCSALQACSLKRDSRLSKTIRELIDWSGIDKMDSIRADLVSAYSKCGDMEEARKIFDRM 474
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R+V+ +W +I G A ++ A+ LF M+ + PD +T S+L AC+
Sbjct: 475 ESRDVL------TWTVMIKGYAQQGDSKAALELFHRMKPEGVEPDSVTFSSVLQACS 525
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 77/145 (53%), Gaps = 24/145 (16%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+EA +D ++ + + P+ T+ L+S CS+L + G+ +H+ + + + V++
Sbjct: 297 SEAFAFYDGMRRDC---VSPTSATFVALLSACSTL---EQGKHLHEEVKAFGFESITVVE 350
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
++ MY +CGSLEDA + +M Q+ D SW+A++ A + +A++LF
Sbjct: 351 TALMFMYSRCGSLEDAEFLFAKMQQK------DYVSWSAMVTSHAQFGDPGKALTLF--- 401
Query: 142 RDRELIPDGL-----TVRSLLCACT 161
R++I +G+ T S L AC+
Sbjct: 402 --RQMILEGMQLSLPTFCSALQACS 424
>gi|302795326|ref|XP_002979426.1| hypothetical protein SELMODRAFT_110980 [Selaginella moellendorffii]
gi|300152674|gb|EFJ19315.1| hypothetical protein SELMODRAFT_110980 [Selaginella moellendorffii]
Length = 342
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 6/117 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
S YA LI C + ++++ GR+VH H+L + L N ++ MY +CGS+E+AR D
Sbjct: 24 SLYASLIQCCGAAKAIEEGRRVHRHLLRYGYGGNTFLGNLLIQMYRQCGSMEEARSTFDS 83
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
M +++V+ SWNA+++G + EA+ L+ M + P+ +T+ +L AC
Sbjct: 84 MAKKDVV------SWNAMVSGYSQAGQGREALDLYQRMDSEGVEPNRVTLLGVLGAC 134
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A D Q + + P+ T ++ C + + L GR VH I SS+ + D+ L+ ++
Sbjct: 108 ALDLYQRMDSEGVEPNRVTLLGVLGACGNSQLLAEGRSVHSRIRSSRRESDLSLEAALVT 167
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY +CGSL++A V D + ++N +L SW A+I G A +A EAM ++ M
Sbjct: 168 MYARCGSLQEAEKVFDGISRKN-----NLVSWTAMIVGFAKHGHAEEAMEMYRRMELDGA 222
Query: 147 IPDGLTVRSLLCACT 161
PD +T ++L AC+
Sbjct: 223 EPDDVTFITILVACS 237
>gi|255545590|ref|XP_002513855.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546941|gb|EEF48438.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 69/123 (56%), Gaps = 6/123 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ C ++L+ GR++H I+ + DV + +++MY KCG + D++ V D M
Sbjct: 169 TVCAILKACGEKKALKFGRQLHCAIVKGMYKDDVFIGTSLVDMYAKCGEMIDSKEVFDGM 228
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+RN + +W +IIAG A EA+ LF M+ R++I + LTV S+L AC S S
Sbjct: 229 RKRNTV------TWTSIIAGYARKGLGEEAIRLFRVMKRRKIISNNLTVVSVLRACGSIS 282
Query: 165 NVL 167
L
Sbjct: 283 ASL 285
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ C S+ + GR+VH I+ S Q +V L + ++ Y KCG A V +M
Sbjct: 270 TVVSVLRACGSISASLTGREVHAQIIKSGIQSNVYLGSTLVWFYCKCGEFNIASKVLQQM 329
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
RNV+ SW A+I+G EA+ EM D + P+ T S L AC +
Sbjct: 330 SFRNVV------SWTAMISGYIGLGYEFEALEFLKEMMDEGVEPNEFTYSSALKACANLE 383
Query: 165 NVL 167
+VL
Sbjct: 384 SVL 386
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 74/141 (52%), Gaps = 10/141 (7%)
Query: 21 NLYNEALVAF-DFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
L +EAL F + ++N R T+ C+++ CS +LGR++H ++ + +++
Sbjct: 46 GLDDEALRLFSELIENGVTANNR--TFVCILNVCSKRLDFELGRQIHACVVKGNWR-NLI 102
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ + I++ Y +CG LE A ++ +++V+ W ++I+ + EA +FS
Sbjct: 103 VDSAIVSFYAQCGDLESAFCAFFQVREKDVV------CWTSVISACSQQGRGEEAFRMFS 156
Query: 140 EMRDRELIPDGLTVRSLLCAC 160
+M +P+ TV ++L AC
Sbjct: 157 QMLGEGFLPNEFTVCAILKAC 177
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 8/134 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A +FL+ + + P+ TY+ + C++L S+ G+ +H + + +V + + ++
Sbjct: 353 ALEFLKEMMDEGVEPNEFTYSSALKACANLESVLQGKLIHSFANKTPASSNVYVGSALIY 412
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG L DA V D MP+RN+I SW +I A EA+ L M+ +
Sbjct: 413 MYSKCGYLSDAIQVFDSMPERNLI------SWKTMILSYARNGLCREALKLMYRMQAEGI 466
Query: 147 IPDGLTVRSLLCAC 160
D S++ +C
Sbjct: 467 EVDDYIYASVMGSC 480
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 13/81 (16%)
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ N ++++Y + G L +AR V D+M +R V+ SW A+I G S +EA+ LFS
Sbjct: 3 VDNNLISVYARLGELIEARKVFDQMHERCVV------SWTAMINGYVSFGLDDEALRLFS 56
Query: 140 EMRDRELIPDGLTV--RSLLC 158
ELI +G+T R+ +C
Sbjct: 57 -----ELIENGVTANNRTFVC 72
>gi|302775186|ref|XP_002971010.1| hypothetical protein SELMODRAFT_95046 [Selaginella moellendorffii]
gi|300160992|gb|EFJ27608.1| hypothetical protein SELMODRAFT_95046 [Selaginella moellendorffii]
Length = 320
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 7/146 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
++ EAL + + N FR T+ + C +L +LQ GR VH I +S + D L
Sbjct: 71 GMFREALHHYHAM-NLDGFRPNQITFVSALDACLNLGALQQGRAVHAAIATSGVELDCFL 129
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ ++NMYGKCGSLE AR V + MP + D+ +W +II A + AM LF
Sbjct: 130 ETALVNMYGKCGSLETARAVFNRMP------ATDIVTWTSIIGSHAQHGKGSRAMDLFHR 183
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M P+ +T + +C+ V
Sbjct: 184 MELEGHTPNAVTFIIFISSCSHAGLV 209
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
MYGKC S+E+AR+ D + QRN SWN +I+ A + EA+ +F M
Sbjct: 1 MYGKCRSVENARLSFDRITQRN------RRSWNVMISAYAQNGHLEEAVGMFKAM 49
>gi|302782567|ref|XP_002973057.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
gi|300159658|gb|EFJ26278.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
Length = 531
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 79/136 (58%), Gaps = 9/136 (6%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYIL 85
A D Q T+ + P T A +S C+ SLQLGR++H +L ++S Q +++Q ++
Sbjct: 269 ALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFQSSLMVQTALV 328
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
NMYG+CG LE AR + ++M QR+V+ SW A+ + A +A++ + L+ EM
Sbjct: 329 NMYGRCGRLETARSMFEDMGQRDVL------SWTAMTSVYAQQGHADQVLDLYLEMVLHG 382
Query: 146 LIPDGLTVRSLLCACT 161
+ P+ +T S+L C+
Sbjct: 383 IRPNEITFTSILVGCS 398
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY + C+SL +L+ G+ +H + Q +V+ +L MY KCG L+ AR V + +
Sbjct: 157 TYVTALGACASLGALKEGKAIHLRVSECGFQ-SLVVHTALLTMYAKCGELDAARAVFNRL 215
Query: 105 PQRNVIESP------------------------DLASWNAIIAGVASPSNANEAMSLFSE 140
+++ DL SWNA+I A EA+ L+
Sbjct: 216 ASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQT 275
Query: 141 MRDRELIPDGLTVRSLLCAC 160
M + ++PD +T+ S L AC
Sbjct: 276 MTSQGVLPDEVTIASSLSAC 295
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MYGKCGS+E+AR V D + R D SW ++I+ A+ +EA+ L+ +M +
Sbjct: 1 MYGKCGSVEEARKVFDGIKNR------DAVSWTSMISSYANNGFCDEALDLYQQMDADGI 54
Query: 147 IPDGLTVRSLLCACT 161
PD +T S L ACT
Sbjct: 55 QPDSITFTSALLACT 69
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 12/136 (8%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A D Q I+P T+ + C+ L G+ +H I+SS + D V + ++N
Sbjct: 42 ALDLYQQMDADGIQPDSITFTSALLACTKLAD---GKAIHARIVSSNMESDFV-GSALIN 97
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY +CG + AR +++ ++V+ W +++ + EA+ L+ M +
Sbjct: 98 MYARCGDVSSARQAFEKIQNKHVV------CWTSLMTAYVQTGHYREALDLYGRMDHEGV 151
Query: 147 IPDGLTVRSLLCACTS 162
DG+T + L AC S
Sbjct: 152 HADGVTYVTALGACAS 167
>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g49142
gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
Length = 686
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 67/113 (59%), Gaps = 6/113 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ C +L LG+K+H +I K P+++L+N +++MY KCG LE AR V + M R+
Sbjct: 315 VLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRD 374
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
V+ SW A+I+ +A++LFS+++D L+PD + + L AC+
Sbjct: 375 VV------SWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACS 421
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 9/151 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y E + F + N R T+ C++ CS ++ +GRK+H + +
Sbjct: 119 GFYGEGVKVFGTM-CGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFV 177
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MYGKCG L +AR+V DEM +R+V+ SWN+++ G A ++A+ + E
Sbjct: 178 GNGLVSMYGKCGFLSEARLVLDEMSRRDVV------SWNSLVVGYAQNQRFDDALEVCRE 231
Query: 141 MRDRELIPDGLTVRSLLCAC--TSPSNVLYL 169
M ++ D T+ SLL A T+ NV+Y+
Sbjct: 232 MESVKISHDAGTMASLLPAVSNTTTENVMYV 262
Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ T +R+L R VH I+ + + L ++ Y + AR V DE+P+RN
Sbjct: 48 VLDTYPDIRTL---RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERN 104
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
VI N +I + E + +F M + PD T +L AC+ ++
Sbjct: 105 VI------IINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIV 157
>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Cucumis sativus]
gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Cucumis sativus]
Length = 706
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 7/144 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y EA F L + P T+A +I + L + GR++H + + D+ +
Sbjct: 214 YVEAFRLF-ILMREEFYDCGPRTFATMIRASAGLEIIFPGRQLHSCAIKAGLGQDIFVSC 272
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCGSLEDA V DEMP + ++ WN+IIAG A + EA+ L+ EMR
Sbjct: 273 ALIDMYSKCGSLEDAHCVFDEMPDKTIV------GWNSIIAGYALHGYSEEALDLYHEMR 326
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
D + D T ++ C+ ++V
Sbjct: 327 DSGVKMDHFTFSIIIRICSRLASV 350
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 75/139 (53%), Gaps = 6/139 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y+E + ++ ++ T++ +I CS L S+ ++VH ++ + DVV
Sbjct: 314 YSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVANT 373
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++ Y K G ++DAR V D M RN+I SWNA+IAG + + EA+ +F +M
Sbjct: 374 ALVDFYSKWGKVDDARHVFDRMSCRNII------SWNALIAGYGNHGHGEEAIDMFEKML 427
Query: 143 DRELIPDGLTVRSLLCACT 161
++P+ +T ++L AC+
Sbjct: 428 REGMMPNHVTFLAVLSACS 446
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 6/121 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y +AL F+ + F + STY LI+ C L+S++ +++ ++++ + +PD ++N
Sbjct: 112 YRDALEMFEIFELEDGFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRN 171
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+L M+ KCG + DA + DEMP RN + SW II+G N EA LF MR
Sbjct: 172 RVLLMHVKCGMMIDACRLFDEMPARNAV------SWGTIISGYVDSGNYVEAFRLFILMR 225
Query: 143 D 143
+
Sbjct: 226 E 226
>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
Length = 696
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 72/116 (62%), Gaps = 7/116 (6%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
+ +++TC+ L L LGR +H + S ++ + + +++MYGKCG +EDA V EMPQ
Sbjct: 327 SSVLTTCAGLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQ 386
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSLLCACT 161
RN L +WNA+I G A +A+ A+S+F +M +E P+ +T+ ++L AC+
Sbjct: 387 RN------LVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVLTACS 436
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
+ C+ + +L LG + + + DV + N +++ YGKC + AR V D M RN
Sbjct: 228 FFNACAGMTNLSLGEQFYGFVAKCGFGKDVSVSNSVVDFYGKCRCVGKARAVFDGMGVRN 287
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ SW +++ A EA ++ R P V S+L C
Sbjct: 288 NV------SWCSMVVAYAQNGAEEEAFFVYLGARRAGEEPTDFMVSSVLTTC 333
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
L+MY K G L AR + DEMP RNV+ +WNA++ E + + +R
Sbjct: 163 LDMYFKTGCLALARRLFDEMPNRNVV------AWNAVMTNAVLDGRPLETVEAYFGLRGA 216
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
+P+ ++V + AC +N+
Sbjct: 217 GGMPNVVSVCAFFNACAGMTNL 238
>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 591
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 79/139 (56%), Gaps = 8/139 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLIS--TCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ LV FD ++N+ + ++P CL++ C++L +L G++VHD I + + L N
Sbjct: 197 DVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSN 256
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY +CGS++ A V M +RNV+ SW A+I+G+A EA+ F+EM
Sbjct: 257 TLVSMYSRCGSMDKAYQVFYGMRERNVV------SWTALISGLAMNGFGKEAIEAFNEML 310
Query: 143 DRELIPDGLTVRSLLCACT 161
+ P+ T+ LL AC+
Sbjct: 311 KFGISPEEQTLTGLLSACS 329
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 9/139 (6%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
E F L+ N++ P + + + C L G ++H I S D +L +
Sbjct: 95 EGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTL 154
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR-- 142
+++Y C + DA V DE+P+R D SWN + + + + LF +M+
Sbjct: 155 MDLYSTCENSTDACKVFDEIPKR------DTVSWNVLFSCYLRNKRTRDVLVLFDKMKND 208
Query: 143 -DRELIPDGLTVRSLLCAC 160
D + PDG+T L AC
Sbjct: 209 VDGCVKPDGVTCLLALQAC 227
>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 861
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TYA ++ TC++L S LG+++H ++ + Q DV + + +++MY KCG L D+R++ ++
Sbjct: 563 TYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYISSTLVDMYSKCGDLHDSRLMFEKS 622
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+R D +WNA+I G A EA+ LF M + P+ +T S+L AC
Sbjct: 623 LRR------DFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACA 673
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 52 TCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIE 111
C+ ++ L G +++D + S DV + N ++MYGKC +L +A V DEM +R+ +
Sbjct: 349 ACALVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAV- 407
Query: 112 SPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
SWNAIIA E + LF M + PD T S+L ACT S
Sbjct: 408 -----SWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKACTGGS 455
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 76/141 (53%), Gaps = 7/141 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
NL + AL F +Q N + S YA ++ +C++L L+LG ++H H L S D ++
Sbjct: 218 NLLSLALKFFKEMQK-VNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIV 276
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ L+MY KC +++DA+++ D+ E+ + S+NA+I G + + +A+ LF
Sbjct: 277 RTATLDMYAKCDNMQDAQILFDKS------ENLNRQSYNAMITGYSQEEHGFKALLLFHR 330
Query: 141 MRDRELIPDGLTVRSLLCACT 161
+ L D +++ + AC
Sbjct: 331 LMSSGLGFDEISLSGVFRACA 351
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
RI P T+ ++ C+ SL G ++H I+ S + + +++MY KCG +E+A
Sbjct: 436 RIEPDEFTFGSVLKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEA 494
Query: 98 RVVSDEMPQR-NVIESPD-------------LASWNAIIAGVASPSNANEAMSLFSEMRD 143
+ QR NV + + SWN+II+G + +A LF+ M +
Sbjct: 495 EKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMME 554
Query: 144 RELIPDGLTVRSLLCACT 161
+ PD T ++L C
Sbjct: 555 MGITPDKFTYATVLDTCA 572
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 20/144 (13%)
Query: 13 FYNSQPIQNLYNEALVAFDFLQNNTNFR--------------IRPSTYACLISTCSSLRS 58
F+N P++++ + + +LQN + T+A ++ CS L
Sbjct: 94 FFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDGRTFAIILKVCSCLED 153
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118
LG ++H ++ DVV + +L+MY K ++ V +P++N + SW
Sbjct: 154 TSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSV------SW 207
Query: 119 NAIIAGVASPSNANEAMSLFSEMR 142
+AIIAG + + A+ F EM+
Sbjct: 208 SAIIAGCVQNNLLSLALKFFKEMQ 231
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 53 CSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIES 112
C+ +L+LG++ H H++ S +P + N +L +Y A +V D MP R+V+
Sbjct: 16 CAKQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVV-- 73
Query: 113 PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
SWN +I G A +N +A F+ M R+++
Sbjct: 74 ----SWNKMINGYAKSNNMVKASFFFNMMPVRDVV 104
>gi|347954474|gb|AEP33737.1| chlororespiratory reduction 21 [Nasturtium officinale]
Length = 826
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 13/142 (9%)
Query: 21 NLYNEALVAF-DFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPD 77
L EAL+ F + LQN I P + + C +L+ + GR VH +++ S
Sbjct: 150 GLCEEALMGFVEMLQN----EIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKSGLHDC 205
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + + + +MYGKCG L+DAR V DE+P+RNV+ +WNA++ G EA+ L
Sbjct: 206 VFVASSLADMYGKCGVLDDARKVFDEIPERNVV------AWNALMVGYVQNGMNEEAIRL 259
Query: 138 FSEMRDRELIPDGLTVRSLLCA 159
S+MR + P +TV + L A
Sbjct: 260 LSDMRKEGIEPTRVTVSTCLSA 281
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 9/141 (6%)
Query: 29 AFDFLQNNTNFRIRPSTYACLI--STCSSLRSLQLGRKVHDHILSSKSQPD-VVLQNYIL 85
A FL+ +RP+ ++ + S CS+L SL GR VH +I+ ++ V+++ ++
Sbjct: 528 AILFLRKMQESGLRPNAFSITVALSACSNLASLHFGRSVHGYIIRNQQHSSSVLIETSLV 587
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+MY KCG + A EM R+ + S DL +NA+I+ A N EA++L + D
Sbjct: 588 DMYAKCGDINKA-----EMVFRSKLCS-DLPLYNAMISAYALNGNVKEAIALCRRLEDTG 641
Query: 146 LIPDGLTVRSLLCACTSPSNV 166
+ PD +T SLL AC +V
Sbjct: 642 IKPDNITFTSLLSACNHAGDV 662
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
N + T + L+S + ++L+LG++V + + D+VL + ++MY CGS+ DA
Sbjct: 368 NLKYDCVTLSTLMSAAARTQNLKLGKEVQCYCIRHSFASDIVLASTAVDMYANCGSIIDA 427
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
+ V D + + DL WN +++ A + EA LF EM+ + P+ +T
Sbjct: 428 KKVFDS------VLAKDLILWNTLLSVYAESGLSGEAFRLFYEMQLESVPPNAIT 476
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 12/138 (8%)
Query: 27 LVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQNYI 84
L DF + RI P Y ++ C R L G+++H IL + + ++ +
Sbjct: 56 LTEMDFRK----LRIGPEIYGEILQGCVYERDLCTGKQIHARILKNGDFYAKNEYIETKL 111
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+ Y KC + E + V+ ++ RNV SW AII EA+ F EM
Sbjct: 112 VIFYAKCDAFEASEVLFSKLRVRNVY------SWAAIIGVKCRIGLCEEALMGFVEMLQN 165
Query: 145 ELIPDGLTVRSLLCACTS 162
E+ PD V ++ AC +
Sbjct: 166 EIFPDNFVVPNVCKACGA 183
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 71/150 (47%), Gaps = 10/150 (6%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
+QN NE A L + I P+ T + +S +++ ++ G++ H + + +
Sbjct: 248 VQNGMNEE--AIRLLSDMRKEGIEPTRVTVSTCLSASANMDGIEEGKQSHAIAIVNGLEL 305
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D +L LN Y K G +E A ++ D M +++V+ +WN +I+G +A+
Sbjct: 306 DNILGTSNLNFYCKVGLIEYAEMIFDRMIEKDVV------TWNLLISGYVQQGLVEDAIH 359
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+ MR L D +T+ +L+ A N+
Sbjct: 360 MCQLMRLENLKYDCVTLSTLMSAAARTQNL 389
Score = 39.3 bits (90), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
P+ + N I+ + + G + +A+ + +M + P+L SW ++ G+ + EA+
Sbjct: 472 PNAITWNLIILSFLRNGQVNEAKEIFSQMQSSGIF--PNLVSWTTMMNGLVQNGCSEEAI 529
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
+M++ L P+ ++ L AC++ +++ +
Sbjct: 530 LFLRKMQESGLRPNAFSITVALSACSNLASLHF 562
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 13/140 (9%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AF+ + I P+ T+ L+++C++ +L GR++H HI + DVV+ N ++
Sbjct: 264 AFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALIT 323
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP-----SNANEAMSLFSEM 141
MY KC ++DAR D M +R+VI SW+A+IAG A + +E L M
Sbjct: 324 MYCKCNCIQDARETFDRMSKRDVI------SWSAMIAGYAQSGYQDKESLDEVFQLLERM 377
Query: 142 RDRELIPDGLTVRSLLCACT 161
R + P+ +T S+L AC+
Sbjct: 378 RREGVFPNKVTFMSILKACS 397
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 8/142 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
N AFD + + I P+ T+ ++ C++ L+ R++H + +S + DV +
Sbjct: 158 NHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVA 217
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
++ MY KCG + A + +M +RNV+ SW AII A NEA L+ +M
Sbjct: 218 TALITMYSKCGEISLACEIFQKMKERNVV------SWTAIIQANAQHRKLNEAFELYEKM 271
Query: 142 RDRELIPDGLTVRSLLCACTSP 163
+ P+ +T SLL +C +P
Sbjct: 272 LQAGISPNAVTFVSLLNSCNTP 293
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 25/145 (17%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ CS +L+ GR++H I + D LQ I NMY KCGS+ +A V +M
Sbjct: 388 TFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKM 447
Query: 105 PQRNVI-------------------------ESPDLASWNAIIAGVASPSNANEAMSLFS 139
+NV+ + ++ SWN +IAG A + + L S
Sbjct: 448 ENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLS 507
Query: 140 EMRDRELIPDGLTVRSLLCACTSPS 164
M+ PD +T+ S+L AC + S
Sbjct: 508 SMKVEGFQPDRVTIISILEACGALS 532
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ C +L +L+ G+ VH + + D V+ ++ MY KCG + +AR V D++
Sbjct: 520 TIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKI 579
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
R D +WNA++AG EA+ LF M + P+ +T +++ AC
Sbjct: 580 SNR------DTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISAC 629
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
+ +TY C+I C+ LR + G+ VH + D+ L N ++N Y K G + V
Sbjct: 76 VNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQV 135
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
M R+V+ +W+++IA A ++ +A F M+D + P+ +T S+L AC
Sbjct: 136 FRRMTLRDVV------TWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKAC 189
Query: 161 TSPS 164
+ S
Sbjct: 190 NNYS 193
Score = 36.6 bits (83), Expect = 4.0, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY--I 84
A D + R+ P+ T+ +IS C +Q GR++ I+ + Q+Y +
Sbjct: 603 AVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIF-RIMQEDFRMKPGKQHYGCM 661
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+++ G+ G L++A MP PD++ W+A++ S N A
Sbjct: 662 VDLLGRAGRLQEAEEFIQRMPCE-----PDISVWHALLGACKSHDNVQLA 706
>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
Length = 748
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 82/144 (56%), Gaps = 7/144 (4%)
Query: 19 IQN-LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+QN L +EA+ +D +Q + + T+ ++ S L +LQ G ++H + + D
Sbjct: 349 MQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLD 408
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + ++++Y KCG L++A ++ ++ P+R+ WNA+I+GV + +A+SL
Sbjct: 409 VYVGTCVIDLYAKCGKLDEAMLLFEQTPRRST------GPWNAVISGVGVHGHGAKALSL 462
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
FS+M+ + PD +T SLL AC+
Sbjct: 463 FSQMQQEGISPDHVTFVSLLAACS 486
Score = 59.3 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + ++ C L L +H + + ++ + N ++++YGK G LE+ R V D M
Sbjct: 172 TVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGM 231
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
R DL +WN+II+G A+ +F MRD + PD LT+ SL A
Sbjct: 232 SSR------DLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASA 280
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 62 GRKVHDHILSSK-SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNA 120
GR VH +++ D++ N I++MY K +E A+ + D MP R D SWN
Sbjct: 290 GRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVR------DAVSWNT 343
Query: 121 IIAGVASPSNANEAMSLFSEMRDRE 145
+I G A+EA+ ++ M+ E
Sbjct: 344 LITGYMQNGLASEAIHVYDHMQKHE 368
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D +++ Y + G + DA DEM R D+ +WNA+++G+ + A EA+
Sbjct: 103 DAFASGALVHAYLRFGRVRDAYRAFDEMRHR------DVPAWNAMLSGLCRNARAAEAVG 156
Query: 137 LFSEMRDRELIPDGLTVRSLLCAC 160
LF M + D +TV S+L C
Sbjct: 157 LFGRMVMEGVAGDAVTVSSVLPMC 180
>gi|242062166|ref|XP_002452372.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
gi|241932203|gb|EES05348.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
Length = 691
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 71/122 (58%), Gaps = 8/122 (6%)
Query: 41 IRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ P ++ + L++ C+SL + + G++VH H++ + DV N ++ Y KCGS+EDA
Sbjct: 503 LEPDSFVLSSLLNACASLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYTYAKCGSIEDAD 562
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+ +P++ V+ SW+A+I G+A + A+ LF M D + P+ +T+ S+L
Sbjct: 563 MAFSGLPEKGVV------SWSAMIGGLAQHGHGKRALELFHRMLDEGVAPNNITLTSVLS 616
Query: 159 AC 160
AC
Sbjct: 617 AC 618
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/121 (31%), Positives = 71/121 (58%), Gaps = 8/121 (6%)
Query: 42 RPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP+ + +C+++ C+ R + GR+VH ++ + DV N +++MY K G +E A V
Sbjct: 199 RPNEFGFSCVVNACTGSRDWETGRQVHGMVVRTGYDKDVFTANALVDMYSKLGDIEMAAV 258
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V +++P + D+ SWNA+IAG + + + A+ L +M+ ++P+ T+ S+L A
Sbjct: 259 VFEKIP------AADVVSWNALIAGCVTHGHDHRALELLLQMKPLGVVPNVFTLSSVLKA 312
Query: 160 C 160
C
Sbjct: 313 C 313
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + ++ C+ + LGR++H ++ + + D + +++MY K G L+DAR V D M
Sbjct: 305 TLSSVLKACAGAGAFNLGRQIHGFMIKADADSDEFVAVGLVDMYAKDGFLDDARKVFDFM 364
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
P+R DL WNA+I+G + E +SLF MR L
Sbjct: 365 PRR------DLILWNALISGCSHDGRHGEVLSLFHRMRKEGL 400
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P T ++ + RSL G +H H+L KS N++L+ Y +C AR V D
Sbjct: 4 PGTIGSALARFGASRSLLAGAHLHSHLL--KSGLLASYSNHLLSFYSRCRLPSAARAVFD 61
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
E+P P SW++++ ++ +A+ F MR R
Sbjct: 62 EIP------DPCHVSWSSLVTAYSNNGMPRDALWAFRSMRGR 97
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
+ + +T A ++ + +SL ++ ++VH D + N +++ Y KCG L+ A
Sbjct: 401 DLDVNRTTLAAVLKSTASLEAICHTKQVHALAEKIGLLSDSHVVNGLIDSYWKCGRLDYA 460
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
V +E ++I S +++ ++ + +A+ LF +M + L PD + SLL
Sbjct: 461 IKVFEESCSDDIISS------TSMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLL 514
Query: 158 CACTSPS 164
AC S S
Sbjct: 515 NACASLS 521
Score = 43.5 bits (101), Expect = 0.029, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP--QRNVIESPDLA 116
++ G +VH ++++ DV + N ++ MYG G +++A+ + DE P +RN +
Sbjct: 116 VRFGAQVHALAVATRLIQDVFVTNALVAMYGGFGMVDEAKRIFDE-PGGERNAV------ 168
Query: 117 SWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
SWN +I+ +A+ +F EM P+ ++ ACT
Sbjct: 169 SWNGMISAYVKNDRCRDAVGVFREMVWSGERPNEFGFSCVVNACT 213
>gi|255541646|ref|XP_002511887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549067|gb|EEF50556.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 478
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 77/147 (52%), Gaps = 7/147 (4%)
Query: 18 PIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ +L EAL F +Q N T++ ++++C++L S +LGR++H I D
Sbjct: 197 ALNSLAEEALTVFKLMQLE-NLIGDGFTFSSMLNSCATLGSWELGRQIHGLICKLSFDLD 255
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+++ + I+NMY K +EDAR D M +NV+ SWN ++ + EAM L
Sbjct: 256 ILVASGIVNMYAKNEYIEDARKAFDCMTAKNVV------SWNTMVVAYGRQGDGKEAMKL 309
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPS 164
EM + PD LT+ S+L +C S S
Sbjct: 310 LKEMLLEDFAPDELTLASILSSCGSVS 336
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 6/120 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P T L C L +++GR++H ++ Q + ++ + ++++YGKCG +AR V D
Sbjct: 120 PITLNVLFRACLELNGIEIGRQLHCLVVKLGFQLNCLVNSALVDLYGKCGLATEARCVFD 179
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
++ + DL WN +++ A S A EA+++F M+ LI DG T S+L +C +
Sbjct: 180 DVMYK------DLVLWNVMLSCYALNSLAEEALTVFKLMQLENLIGDGFTFSSMLNSCAT 233
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118
LQ G +VH H++ + LQN IL++Y KC +DA + DEM RNV+ +W
Sbjct: 30 LQGGIQVHAHLVKLGLYNVLSLQNKILDVYVKCKEFKDAHKLFDEMTVRNVV------TW 83
Query: 119 NAIIAGVASPSNANE-----AMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
N +I G+ + N + S F +M E+ D +T+ L AC + +
Sbjct: 84 NTVICGLVNCGNNYKPCLYTGFSYFKKMLLDEVGFDPITLNVLFRACLELNGI 136
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++S+C S+ + +VH +++ Q + + N ++N Y KCG A +
Sbjct: 324 TLASILSSCGSVSASCEIMQVHVYVVKFGLQSFLSIGNAMINAYSKCGRAASA------L 377
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
N + P+L +W ++I+G A S + + +F +M + PD + +L AC+
Sbjct: 378 KSFNSVPEPNLVTWTSLISGYAFNSLPKDGIKMFEKMLSAGVRPDQIAFLGVLSACSHAG 437
>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 474
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 79/138 (57%), Gaps = 7/138 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILS-SKSQPDVVLQN 82
+E L +F + + + +T ++S C+ L + G+ VH + + ++ DV ++N
Sbjct: 169 SEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKN 228
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MYGKCG++E A V + +R DL SWN +I G+A+ + EA++LF EM+
Sbjct: 229 ALIDMYGKCGAIEIAMEVFKGIKRR------DLISWNTMINGLAAHGHGTEALNLFHEMK 282
Query: 143 DRELIPDGLTVRSLLCAC 160
+ + PD +T +LCAC
Sbjct: 283 NSGISPDKVTFVGVLCAC 300
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DV+ N +L Y G +E V D+MP+RNV SWN +I G A +E +
Sbjct: 120 DVMSWNTVLEGYANIGDMEACERVFDDMPERNVF------SWNGLIKGYAQNGRVSEVLG 173
Query: 137 LFSEMRDR-ELIPDGLTVRSLLCACTS 162
F M D ++P+ T+ +L AC
Sbjct: 174 SFKRMVDEGSVVPNDATMTLVLSACAK 200
>gi|302757303|ref|XP_002962075.1| hypothetical protein SELMODRAFT_77340 [Selaginella moellendorffii]
gi|300170734|gb|EFJ37335.1| hypothetical protein SELMODRAFT_77340 [Selaginella moellendorffii]
Length = 320
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 7/146 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
++ EAL + + N FR T+ + C +L +LQ GR VH I +S + D L
Sbjct: 71 GMFREALHHYHAM-NLDGFRPNQITFVSALDACLNLGALQQGRAVHAAIATSGVELDCFL 129
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ ++NMYGKCGSLE AR V + MP + D+ +W +II A + AM LF
Sbjct: 130 ETALVNMYGKCGSLETARAVFNRMP------ATDIVTWTSIIGSHAQHGKGSRAMDLFHR 183
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M P+ +T + +C+ V
Sbjct: 184 MELEGHTPNAVTFIIFISSCSHAGLV 209
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
MYGKC S+E+AR+ D + QRN SWN +I+ A + EA+ +F M
Sbjct: 1 MYGKCRSVENARLSFDRITQRN------RRSWNVMISAYAQNGHLEEAVGMFKAM 49
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 26/163 (15%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ +A+ F +Q + +T +S C++L+ L+LG+K+H H + + ++ N
Sbjct: 219 FEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIH-HYVRDNVKFTPIIGN 277
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVI-----------------------ESP--DLAS 117
+L+MY KCG L AR V +EMP +NVI SP D+
Sbjct: 278 ALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVI 337
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
W A+I G + +EA++LF EM+ R++ PD V SLL C
Sbjct: 338 WTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGC 380
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 76/143 (53%), Gaps = 11/143 (7%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
N ++EA+ F +Q +++P + L++ C+ +++ G+ +H+ I ++ D
Sbjct: 349 NRFDEAVALFREMQIR---KVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDA 405
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
V+ ++ MY KCG +E A + + + D ASW +II G+A ++A+ LF
Sbjct: 406 VVGTALIEMYAKCGFIEKALEIFYGLRVK------DTASWTSIICGLAMNGKTSKALELF 459
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
S+M+ + PD +T +L AC+
Sbjct: 460 SKMKQAGVRPDDITFIGVLSACS 482
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 16/145 (11%)
Query: 23 YNEALVAFDFLQNN----TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
Y LV F L+ + NF TY + L + K+ + + + D
Sbjct: 118 YKRTLVLFSKLREDGLWPDNF-----TYPFVFKAIGYLGEVSKAEKLRGLVTKTGLEFDT 172
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
++N +++MY + + +++ DEMP R+VI SWN +I+G +A+++F
Sbjct: 173 YVRNSLIDMYAQLALTDVMKMLFDEMPDRDVI------SWNVMISGYVKCRRFEDAINVF 226
Query: 139 SEMRDRE-LIPDGLTVRSLLCACTS 162
M++ L+PD TV S L ACT+
Sbjct: 227 CRMQEESGLMPDEATVVSTLSACTA 251
>gi|242049246|ref|XP_002462367.1| hypothetical protein SORBIDRAFT_02g024490 [Sorghum bicolor]
gi|241925744|gb|EER98888.1| hypothetical protein SORBIDRAFT_02g024490 [Sorghum bicolor]
Length = 532
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 46/123 (37%), Positives = 73/123 (59%), Gaps = 10/123 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQ-PDVVLQNYILNMYGKCGSLEDARVVSDE 103
T L++ C+ L L+LGR VH + SQ V+L N +++MY KCG++EDAR +
Sbjct: 277 TMVALLTACAELGDLELGRWVHARVDLEGSQWRTVLLDNALIHMYLKCGAIEDARCLFGM 336
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
MP+R+ + SW +I+G+A + EA++LF M+DR PDG T+ ++L AC+
Sbjct: 337 MPRRSTV------SWTTMISGLAIHGHPQEALNLFHRMQDR---PDGATMLAVLRACSHA 387
Query: 164 SNV 166
+
Sbjct: 388 GRI 390
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 51/128 (39%), Gaps = 29/128 (22%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILN----MYGKCGSLEDARVVSDEMPQRNVI------- 110
GR +H L+S +++ +Y LEDAR V DEM R V
Sbjct: 158 GRALHARALASGMLAPTGESGHVMTSLVGVYAAARQLEDARKVFDEMLTRAVAAWNCMLA 217
Query: 111 ----------------ESP--DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
E P D +W +I G A+ A EA+ LF MR + D +T
Sbjct: 218 AYVRCGEVDAALRFFGEMPRRDAVAWTTMIGGCANAGRAAEAVDLFWRMRKARVKDDTVT 277
Query: 153 VRSLLCAC 160
+ +LL AC
Sbjct: 278 MVALLTAC 285
Score = 35.8 bits (81), Expect = 5.8, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
NEAL L F+ + ++S C +L+L KV+D ++ + QP+ +
Sbjct: 427 NEALE----LVEKMPFQPNEGVWGAILSGCRRDGNLELAAKVNDRLV--ELQPERAAGHL 480
Query: 84 IL--NMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118
+L NMY G E AR+V + + N E P SW
Sbjct: 481 VLLSNMYAAVGQWEQARMVRERVAALNA-EKPAGRSW 516
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 8/135 (5%)
Query: 28 VAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
+ +F +F IRP+ TY + C++L L G+ H +L S D +++ ++
Sbjct: 109 LTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLI 168
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
MY +CG L AR V DE+ ++ DL SWN++I+G + A +A+ LF EMRD
Sbjct: 169 TMYSRCGELGCARRVFDEISEK------DLVSWNSMISGYSRMGYAGDAVGLFGEMRDAG 222
Query: 146 LIPDGLTVRSLLCAC 160
PD +T+ S+L AC
Sbjct: 223 FEPDEMTLVSILGAC 237
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 6/127 (4%)
Query: 36 NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
+ F T ++ C L L LG + ++ ++ + + + ++ MYGKCG L
Sbjct: 220 DAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLS 279
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
AR V D M +++V+ +WNA+I G A ++EA+ LFS MR+ + PD +T+
Sbjct: 280 SARRVFDRMVKKDVV------TWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVG 333
Query: 156 LLCACTS 162
+L AC S
Sbjct: 334 VLSACAS 340
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 13/147 (8%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+EA++ F ++ + + P T ++S C+S+ +L G+ + + Q D+ +
Sbjct: 310 DEAIILFSGMRESG---VNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVS 366
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+++MY KCGSL+DA V ++MPQ+N + SWNA+I+ +A E++SLF M
Sbjct: 367 TALIDMYAKCGSLDDALRVFEDMPQKNEV------SWNAMISALAFHGRPQESLSLFKRM 420
Query: 142 RDR--ELIPDGLTVRSLLCACTSPSNV 166
+ P+ ++ +L AC V
Sbjct: 421 SKEGGAVRPNDISFIGVLSACVHAGLV 447
>gi|125531828|gb|EAY78393.1| hypothetical protein OsI_33480 [Oryza sativa Indica Group]
Length = 459
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 74/154 (48%), Gaps = 39/154 (25%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE--- 95
+RP T +S C +R L+LGR++H + S V L N +++MY KCGSLE
Sbjct: 224 VRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAK 283
Query: 96 ----------------------------DARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127
DAR V DEMP+R+V WNA++ G
Sbjct: 284 SVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVF------PWNALMTGYVQ 337
Query: 128 PSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
EA+SLF EM++ ++PD +T+ +LL AC+
Sbjct: 338 CKQCKEALSLFHEMQEASVVPDEITMVNLLTACS 371
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ C+ LR G H+L DV + N ++ G +EDAR + D
Sbjct: 127 TFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHLLSIRGPMEDARRLFDRS 186
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM--RDRELIPDGLTVRSLLCAC 160
P R DL SWN +I G N EA+ LF M D + PD +T+ + + C
Sbjct: 187 PVR------DLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGC 238
>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Glycine max]
Length = 690
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 49/140 (35%), Positives = 79/140 (56%), Gaps = 14/140 (10%)
Query: 7 TQLRFTFYNSQPIQ-------NLYNEALVAFDFLQ-NNTNFRIRPSTYACLISTCSSLRS 58
TQ+R T + IQ N Y EA+ F+ L+ + F + STY L+S C LRS
Sbjct: 73 TQIRKTSSSGLCIQIEKLVLCNRYREAMELFEILELEHDGFDVGGSTYDALVSACVGLRS 132
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118
++ ++V +++++S +PD+ + N +L ++ KCG + DAR + DEMP++ D+ASW
Sbjct: 133 IRGVKRVFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLDARKLFDEMPEK------DMASW 186
Query: 119 NAIIAGVASPSNANEAMSLF 138
+I G N +EA LF
Sbjct: 187 MTMIGGFVDSGNFSEAFGLF 206
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 75/139 (53%), Gaps = 6/139 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y+E ++F + ++ +I T + +I C+ L SL+ ++ H ++ D+V
Sbjct: 299 YSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANT 358
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++ Y K G +EDA V + M ++NVI SWNA+IAG + EA+ +F +M
Sbjct: 359 ALVDFYSKWGRMEDAWHVFNRMRRKNVI------SWNALIAGYGNHGQGEEAVEMFEQML 412
Query: 143 DRELIPDGLTVRSLLCACT 161
+IP+ +T ++L AC+
Sbjct: 413 REGMIPNHVTFLAVLSACS 431
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 6/127 (4%)
Query: 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
R T+ +I + L +Q+GR++H L D + +++MY KCGS+EDA V
Sbjct: 217 RSRTFTTMIRASAGLGLVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVF 276
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
D+MP++ + WN+IIA A + EA+S + EMRD D T+ ++ C
Sbjct: 277 DQMPEKTTV------GWNSIIASYALHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICA 330
Query: 162 SPSNVLY 168
+++ Y
Sbjct: 331 RLASLEY 337
>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Cucumis sativus]
gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Cucumis sativus]
Length = 693
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 10/146 (6%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+ EAL FD Q N N +RP TY ++ C L + GR++H+H+L + DV +
Sbjct: 86 FVEALQLFD--QLNCNSYVRPDFYTYPVVLKACGGLGRVIYGRRIHNHLLKTGLIWDVFV 143
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ ++NMY KC DA + DE PQR D+ WNA+I+ A A+ F +
Sbjct: 144 GSSLMNMYAKCDQFVDAIKLFDEFPQR------DVGCWNAVISCYFKDGKAEMALKTFDK 197
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M++ P+ +T ++ +CT N+
Sbjct: 198 MKELGFEPNSVTFTVVVSSCTRLLNL 223
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 76/140 (54%), Gaps = 8/140 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A N ++P T++ +S CS L +L GR++H I++ K + + ++ +L+
Sbjct: 393 ALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELHYCIINHKLEANEIVMGALLD 452
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG +++AR + ++P+R DL SW ++I S A+EA+ LF EM+ +
Sbjct: 453 MYAKCGDVDEARKLFHQLPKR------DLVSWTSMIFAYGSHGQASEALRLFDEMQKLNV 506
Query: 147 IPDGLTVRSLLCACTSPSNV 166
D +T ++L AC+ V
Sbjct: 507 RADSVTFLAVLSACSHAGLV 526
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 74/134 (55%), Gaps = 7/134 (5%)
Query: 26 ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
AL FD ++ F T+ ++S+C+ L +L+ G++VH ++ + D + + ++
Sbjct: 191 ALKTFDKMKE-LGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLSALV 249
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+MYGKCG LE A+ V +++P++N I +WNA+I G + ++ + L M D
Sbjct: 250 DMYGKCGCLEMAKEVFEKIPRKNAI------TWNAMITGYSLKGDSRSCIELLMRMNDEG 303
Query: 146 LIPDGLTVRSLLCA 159
P +T+ S++ A
Sbjct: 304 TKPTLMTLTSIIYA 317
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 8/110 (7%)
Query: 54 SSLRSLQL--GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIE 111
+S RS+QL G+ +H +IL ++ D+ + +++ Y KCG + A + + + V+
Sbjct: 317 ASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVV- 375
Query: 112 SPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
SWN +I+G N +A+ ++ M++ + PD LT S L AC+
Sbjct: 376 -----SWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACS 420
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 46 YACLIS---TCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV-- 100
Y L+S TC+S + L+ G+ +H I S Q ++VL ++ Y C A +V
Sbjct: 3 YVTLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVFQ 62
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCA 159
+++ P D++ WNA+++ + EA+ LF ++ + PD T +L A
Sbjct: 63 TNDCP-------LDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKA 115
Query: 160 CTSPSNVLY 168
C V+Y
Sbjct: 116 CGGLGRVIY 124
>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 12/144 (8%)
Query: 29 AFDFLQNNT---NFRIRPSTYACLISTCSSLRSLQLGRKVHDH---ILSSKSQPDVVLQN 82
AFD L T N R T L+ C+ L +L+ G+ +H + + + D+VL+
Sbjct: 196 AFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLET 255
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCGS++ A V M RNV +WNA+I G+A + +A+SLF +M
Sbjct: 256 ALVDMYAKCGSIDLALQVFRRMRVRNVF------TWNALIGGLAMHGHGEDAISLFDQME 309
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
+L+PD +T +LLCAC+ V
Sbjct: 310 HDKLMPDDVTFIALLCACSHAGLV 333
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY +++ C+ L +++LGR+ H +L + D+ + N ++ Y CGS A V DE
Sbjct: 113 TYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDES 172
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE-LIPDGLTVRSLLCACTSP 163
R+V+ +WN +I + + +A L EM + L PD +T+ SL+ AC
Sbjct: 173 TVRDVV------TWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQL 226
Query: 164 SNV 166
N+
Sbjct: 227 GNL 229
>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
Length = 489
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 82/144 (56%), Gaps = 11/144 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ + EAL F +Q + ++P A + ++ C++L +L G VH +++S + +
Sbjct: 173 KGFHEEALAWFREMQISG---VKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNN 229
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + N ++++Y +CG +E AR V D+M +R V+ SWN++I G A+ NA+E++
Sbjct: 230 VKVSNSLIDLYCRCGCVEFAREVFDKMEKRTVV------SWNSVIVGFAANGNAHESLVY 283
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F +M++ PD +T L AC+
Sbjct: 284 FRKMQEEGFKPDAVTFTGALTACS 307
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
V N +++ Y + G +++A + D+MP+R DL SW A+I G EA++ F
Sbjct: 130 VTWNTMIDGYMRNGQVDNAVKMFDKMPER------DLISWTAMINGFVKKGFHEEALAWF 183
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
EM+ + PD + + + L ACT
Sbjct: 184 REMQISGVKPDYVAIIAALNACT 206
>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
Length = 500
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 82/144 (56%), Gaps = 11/144 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ + EAL F +Q + ++P A + ++ C++L +L G VH +++S + +
Sbjct: 184 KGFHEEALAWFREMQISG---VKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNN 240
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + N ++++Y +CG +E AR V D+M +R V+ SWN++I G A+ NA+E++
Sbjct: 241 VRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVV------SWNSVIVGFAANGNAHESLVY 294
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F +M++ PD +T L AC+
Sbjct: 295 FRKMQEERFKPDAVTFTGALTACS 318
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 10/113 (8%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
+I S ++ R V D++ S V N +++ Y + G +++A + D+MP+R
Sbjct: 115 IIGMYSKRGRVKKARCVFDYMEDKNS----VTWNTMIDGYMRSGQVDNAAKMFDKMPER- 169
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
DL SW A+I G + EA++ F EM+ + PD + + + L ACT
Sbjct: 170 -----DLISWTAMINGFVNKGFHEEALAWFREMQISGVKPDYVAIIAALNACT 217
>gi|302763721|ref|XP_002965282.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
gi|300167515|gb|EFJ34120.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
Length = 721
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 69/118 (58%), Gaps = 8/118 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T+A +S CSSL LQ GR++H I +S+ +P V+L I +MY KCG L A+ V D
Sbjct: 141 TFATALSACSSLGDLQRGREIHARIKASRGIRPSVILDTAIFSMYAKCGDLSTAKSVFDR 200
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNA-NEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+P +NV+ SWNA+IA A ++ ++A+ LF +M + + P T +L AC
Sbjct: 201 IPAKNVV------SWNALIAAYAQSGHSHHQALDLFEKMAEHGVRPCRATFVGVLGAC 252
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 14/138 (10%)
Query: 29 AFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQ---PDVVLQNY 83
A D + +RP +T+ ++ C+ + SL+ K+H I+ + Q DV +QN
Sbjct: 226 ALDLFEKMAEHGVRPCRATFVGVLGACNDVTSLE---KIHARIVETGLQFDVRDVGVQNA 282
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+LNMY KCGSLE AR + +M +R D S N +IA A E++ +F EM
Sbjct: 283 LLNMYAKCGSLEVARDIFRKMQRR------DQVSMNVMIATFAQQGLGKESIQVFREMDL 336
Query: 144 RELIPDGLTVRSLLCACT 161
L D T S++ AC+
Sbjct: 337 EGLPQDDTTFASVITACS 354
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 11/123 (8%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHI----LSSKS-QPDVVLQNYILNMYGKCGSLEDAR 98
+T+A +I+ CS +L+ G+++H + L K P+VV++ +++MYGKCG+LE A+
Sbjct: 344 TTFASVITACSCCGALEFGKRIHKRVVEPVLGRKCCLPNVVVETALVSMYGKCGTLEQAK 403
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V M +N + SWNA++A A +EA + + D + S+L
Sbjct: 404 AVFKAMTTKNSV------SWNAMLAACAHQGQGDEAAAFLRAAACEGVELDSASFISVLI 457
Query: 159 ACT 161
AC+
Sbjct: 458 ACS 460
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 12/122 (9%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
I+ ++A I +C S+ + +H I + L N ++ M K GSL +AR +
Sbjct: 42 IQSDSFAAAIRSCKDSNSVSI---IHQKITRAGLGSSAYLNNLLVLMLAKHGSLCEARSI 98
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
D + +N+ SWN II+ A + + A+ LF++M ++ P +T + L AC
Sbjct: 99 FDAIQHKNIF------SWNIIISAYAHRGHPSTALHLFAKM---DVPPTAMTFATALSAC 149
Query: 161 TS 162
+S
Sbjct: 150 SS 151
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 84/148 (56%), Gaps = 11/148 (7%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
N +++AL F +Q +++P A ++S+C+ L +L LG+ VH+++ + + D
Sbjct: 299 NHFSDALEIFRQMQRA---KVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADT 355
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+++N +++MY KCGS ++A V EM ++ D SWN+II G+A+ E+++LF
Sbjct: 356 IMENSLIDMYMKCGSAKEALQVFKEMKEK------DTLSWNSIIIGLANNGFEKESLNLF 409
Query: 139 SEMRDRELIPDGLTVRSLLCACTSPSNV 166
M P+G+T +L AC + V
Sbjct: 410 QAMLTEGFRPNGVTFLGVLIACANAKLV 437
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C+ + +L G ++H+HI D+ + N ++++Y CG+L AR V DEM
Sbjct: 89 TFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEM 148
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++V+ SWN++I G + + + ++LF M++ + D +T+ ++ ACT
Sbjct: 149 VVKDVV------SWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACT 199
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 74/166 (44%), Gaps = 26/166 (15%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N + + L F +QN + T ++S C+ L + + +I + DV L
Sbjct: 167 NRFKDILALFKLMQNE-GVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYL 225
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNV-------------------------IESPDL 115
N +++ +G+ G L+ A V M RN+ I DL
Sbjct: 226 GNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDL 285
Query: 116 ASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
SW+++I+G + ++ ++A+ +F +M+ ++ PD + + S++ +C
Sbjct: 286 ISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCA 331
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
IE+P WN +I G+A +A++ + + + ++PD LT +L AC
Sbjct: 47 IEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACA 98
>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 78/140 (55%), Gaps = 12/140 (8%)
Query: 26 ALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPD-VVLQN 82
L A D +Q + + P + Y+ L+ C+ L ++ GR VH H++ S + +VLQN
Sbjct: 71 GLYALDLIQRGS---LVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQN 127
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
I+NMY KCG L+DAR + DEMP + D+ +W A+IAG + + +A+ LF +M
Sbjct: 128 IIVNMYAKCGCLDDARRMFDEMPTK------DMVTWTALIAGFSQNNRPRDALLLFPQML 181
Query: 143 DRELIPDGLTVRSLLCACTS 162
P+ T+ SLL A S
Sbjct: 182 RLGFQPNHFTLSSLLKASGS 201
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 69/124 (55%), Gaps = 6/124 (4%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
NF+ TY+ ++S C+S+ +L+ G+ VH H++ S + + N +L+MY K GS++DA
Sbjct: 285 NFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDA 344
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+ V D + + PD+ SWN ++ G A E + F +M + P+ ++ +L
Sbjct: 345 KRVFDRLVK------PDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVL 398
Query: 158 CACT 161
AC+
Sbjct: 399 TACS 402
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 20/163 (12%)
Query: 14 YNSQPIQNLYNEALVAFDFLQNNT--------------NFRIRPSTYACLISTCSSLRSL 59
++ P +++ + F QNN F+ T + L+ S L
Sbjct: 146 FDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGL 205
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
G ++H L Q V + + +++MY +CG ++ A++ D MP ++ + SWN
Sbjct: 206 DPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEV------SWN 259
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
A+I+G A A+ L +M+ + P T S+L AC S
Sbjct: 260 ALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACAS 302
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++ C+++ CS L G + + K +PDV +++ G+ G L+ A EM
Sbjct: 393 SFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREM 452
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
P IE P A W A++ A + N + +++ R EL P R LL
Sbjct: 453 P----IE-PTAAVWGALLG--ACRMHKNMELGVYAAERAFELDPHDSGPRMLL 498
>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Glycine max]
Length = 882
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 11/142 (7%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
L++EAL D ++P Y C++ TC + +L GR++H H++ + DV
Sbjct: 186 GLFDEAL---DLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDV 242
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N ++ MY KCG + AR+V D+MP R+ I SWNA+I+G E + LF
Sbjct: 243 DVVNALITMYVKCGDVNTARLVFDKMPNRDRI------SWNAMISGYFENGVCLEGLRLF 296
Query: 139 SEMRDRELIPDGLTVRSLLCAC 160
M + PD +T+ S++ AC
Sbjct: 297 GMMIKYPVDPDLMTMTSVITAC 318
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 9/129 (6%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
R++P+ T C++S C+ + +L G+++H H L + D + N IL+MY +CG +E A
Sbjct: 504 RLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYA 563
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
++ ++ SWN ++ G A A LF M + + P+ +T S+L
Sbjct: 564 W-------KQFFSVDHEVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISIL 616
Query: 158 CACTSPSNV 166
CAC+ V
Sbjct: 617 CACSRSGMV 625
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T +I+ C L +LGR++H ++L ++ D + N ++ MY G +E+A V
Sbjct: 310 TMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSR- 368
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
E DL SW A+I+G + +A+ + M ++PD +T+ +L AC+
Sbjct: 369 -----TECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLC 423
Query: 165 NV 166
N+
Sbjct: 424 NL 425
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 29 AFDFLQNNTNFRI--RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A +L + RI Y LI C R+ + G +V+ ++ S S + L N +L+
Sbjct: 90 AMSYLDSMHELRIPVEDDAYVALIRLCEWKRARKEGSRVYSYVSISMSHLSLQLGNALLS 149
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
M+ + G+L DA V M +RN L SWN ++ G A +EA+ L+ M +
Sbjct: 150 MFVRFGNLVDAWYVFGRMEKRN------LFSWNVLVGGYAKAGLFDEALDLYHRMLWVGV 203
Query: 147 IPDGLTVRSLLCACTSPSNVL 167
PD T +L C N++
Sbjct: 204 KPDVYTFPCVLRTCGGMPNLV 224
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++S CS L +L +G +H+ ++ N +++MY KC ++ A +
Sbjct: 411 TIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHST 470
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++N++ SW +II G+ + EA+ F EM R L P+ +T+ +L AC
Sbjct: 471 LEKNIV------SWTSIILGLRINNRCFEALFFFREM-IRRLKPNSVTLVCVLSACA 520
>gi|383130007|gb|AFG45722.1| Pinus taeda anonymous locus 0_12933_01 genomic sequence
Length = 147
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 6/123 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
T+ ++PSTYA L+ +C+ +L G+ +H HI D L N ++ MY +CG+L D
Sbjct: 31 TSIPVKPSTYAYLLQSCTKKNALPEGKLIHAHINERAPATDTFLHNSLIMMYVRCGNLTD 90
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
AR + D MP+R D SWN +IA A EA+ +F +M+ + P+ T S+
Sbjct: 91 ARKLFDRMPER------DDFSWNVMIAAYTKHGIAEEALRMFYQMQRTGIEPNSFTFVSV 144
Query: 157 LCA 159
L A
Sbjct: 145 LPA 147
>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
Length = 574
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 75/138 (54%), Gaps = 7/138 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
NE+ V FD ++ + F +++ C+ L ++ R VHD++ + + DV L
Sbjct: 184 NESWVLFDQMRRD-GFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTA 242
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+++MY KCGS++ +R + D M Q+NVI SW+A+I EA+ LF M +
Sbjct: 243 MIDMYAKCGSIDSSREIFDRMEQKNVI------SWSAMIGAYGYHGQGREALELFHMMLN 296
Query: 144 RELIPDGLTVRSLLCACT 161
+IP+ +T SLL AC+
Sbjct: 297 SGIIPNRITFISLLYACS 314
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
+I C L +GR +H +L + D + + +++MY KCG +++A+ + D MP++
Sbjct: 107 VIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKK- 165
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
DL + +IAG A NE+ LF +MR +PD + + +++ AC
Sbjct: 166 -----DLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNAC 212
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 6/112 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
IST R++ ++VH + ++ D+++ N +L M K L A ++ ++M +R
Sbjct: 6 FISTLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEER- 64
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
D SW+ +I G + F E+ PD ++ ++ AC
Sbjct: 65 -----DPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKAC 111
>gi|5059312|gb|AAD38962.1|AF149040_1 hypothetical protein-1 [Prunus dulcis]
Length = 205
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 11/140 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
NEAL F ++ +P T L+S CS +L+LG+ +H++ S+ + +V+
Sbjct: 23 NEALRLFHAMEAAGE---KPDLVTVLSLVSGCSQTGALELGKWIHNYAFSNGLRDSIVVC 79
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N +++MY KCG++ AR +S +P R V+ SW +IAG A N EA+ LF M
Sbjct: 80 NALIDMYAKCGNVNSARELSYALPVRTVV------SWTTMIAGFALNGNYEEALDLFCLM 133
Query: 142 RDRELIPDGLTVRSLLCACT 161
D +L P+ LT ++L ACT
Sbjct: 134 VDLDLKPNHLTFLAILQACT 153
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 117 SWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
SW A+I+G A + NEA+ LF M PD +TV SL+ C+
Sbjct: 8 SWTAMISGYADKGDLNEALRLFHAMEAAGEKPDLVTVLSLVSGCS 52
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 82/142 (57%), Gaps = 9/142 (6%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y AL F LQ ++RP+ T + ++S C+ L +LQ G+ VH +I + + DVVL
Sbjct: 173 YKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVL 232
Query: 81 QNYILNMYGKCGSLEDARVVSDEM-PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+++MY KCGS+E A+ + D + P+++V+ +W+A+I + + E + LF+
Sbjct: 233 GTSLIDMYAKCGSIERAKCIFDNLGPEKDVM------AWSAMITAFSMHGLSEECLELFA 286
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
M + + P+ +T ++LCAC
Sbjct: 287 RMVNDGVRPNAVTFVAVLCACV 308
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 13/122 (10%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P LI+ SS + R+ D I +QPD+ N I++ K G + AR + D
Sbjct: 95 PFVQTSLINMYSSCGTPTFARQAFDEI----TQPDLPSWNAIIHANAKAGMIHIARKLFD 150
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE---LIPDGLTVRSLLCA 159
+MP++NVI SW+ +I G S A+SLF ++ E L P+ T+ S+L A
Sbjct: 151 QMPEKNVI------SWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSA 204
Query: 160 CT 161
C
Sbjct: 205 CA 206
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 55 SLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPD 114
S+ + GR++H IL D +Q ++NMY CG+ AR DE+ Q PD
Sbjct: 72 SINTPHRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQ------PD 125
Query: 115 LASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
L SWNAII A + A LF +M ++ +I
Sbjct: 126 LPSWNAIIHANAKAGMIHIARKLFDQMPEKNVI 158
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 13/130 (10%)
Query: 32 FLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91
FL NN T+ ++ C+ L LQLG K+H ++ DV ++ ++ +Y KC
Sbjct: 108 FLPNNF-------TFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKC 160
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL 151
G LEDA V D++P +NV+ SW AII+G EA+ +F + + L PD
Sbjct: 161 GYLEDAHKVFDDIPDKNVV------SWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSF 214
Query: 152 TVRSLLCACT 161
T+ +L ACT
Sbjct: 215 TIVRVLSACT 224
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query: 29 AFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A D + + P ++ + +S C+ L L G +H I+ +V + +++
Sbjct: 197 AIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVD 256
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG++E AR V D MP++ D+ SW A+I G A EA+ LF +M+ +
Sbjct: 257 MYAKCGNMEKARSVFDGMPEK------DIVSWGAMIQGYALNGLPKEAIDLFLQMQRENV 310
Query: 147 IPDGLTVRSLLCAC 160
PD TV +L AC
Sbjct: 311 KPDCYTVVGVLSAC 324
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 8/135 (5%)
Query: 29 AFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A D ++P Y + +S C+ L +L+LG V + ++ + VL +++
Sbjct: 298 AIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALID 357
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
+Y KCGS+ A V M ++ D WNAII+G+A + LF ++ +
Sbjct: 358 LYAKCGSMSRAWEVFKGMKEK------DRVVWNAIISGLAMNGYVKISFGLFGQVEKLGI 411
Query: 147 IPDGLTVRSLLCACT 161
PDG T LLC CT
Sbjct: 412 KPDGNTFIGLLCGCT 426
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 81/143 (56%), Gaps = 11/143 (7%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
N Y EAL+ F +Q + +I+P T +++ C+ L +L+LG + +I +K + D
Sbjct: 242 NCYKEALMLFREMQTS---KIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDT 298
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N +++MY KCG++E A + + +PQR D +W A++ G+A EA+++F
Sbjct: 299 FVGNALIDMYFKCGNVEMALSIFNTLPQR------DKFTWTAMVVGLAINGCGEEALNMF 352
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
S+M + PD +T +L ACT
Sbjct: 353 SQMLKASVTPDEVTYVGVLSACT 375
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 42/158 (26%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY L + +LQLGR++H H++ +V N ++NMY CG ++ AR + D
Sbjct: 116 TYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMS 175
Query: 105 PQRNVIE-----------SPDLASWNAIIAGVASPSNAN--------------------- 132
+ +V+ D+ SW AI+ G + +
Sbjct: 176 CKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMI 235
Query: 133 ----------EAMSLFSEMRDRELIPDGLTVRSLLCAC 160
EA+ LF EM+ ++ PD T+ S+L AC
Sbjct: 236 DGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTAC 273
Score = 38.9 bits (89), Expect = 0.67, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNM--YGKCGSLEDARVVSDEMPQ 106
L TC S+ L +++H + + + ++QN IL+ + G + AR + D +P+
Sbjct: 20 LFETCKSMYHL---KQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPE 76
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
P + SWN + G + + +SL+ EM +R + PD T
Sbjct: 77 ------PSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYT 116
>gi|147841473|emb|CAN62101.1| hypothetical protein VITISV_033310 [Vitis vinifera]
Length = 396
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 86/145 (59%), Gaps = 11/145 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
NEAL F+ +++ +I+P+ T ++S C+ L S++ G ++ ++ S +V +
Sbjct: 89 NEALELFEXMKSA---QIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVA 145
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+ +L MY KCG++ AR + D++PQR D +WN++I G+A A +A++L++ M
Sbjct: 146 SALLGMYSKCGNIIKARQIFDKLPQR------DNVTWNSMIMGLAINGFAEDAIALYNRM 199
Query: 142 RDRELIPDGLTVRSLLCACTSPSNV 166
++ E+ P+ +T LL ACT +V
Sbjct: 200 KEIEVKPNNITFVGLLTACTHAGHV 224
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++S C+ L L++G ++ + ++++ +L MY KCG+++D R+V D M
Sbjct: 8 TLATVLSICAKLGDLEMGLRIKKLXDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHM 67
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+R+V+ W+A+IAG A +NEA+ LF M+ ++ P+ +T+ S+L AC
Sbjct: 68 ARRDVV------XWSAMIAGYAQNGRSNEALELFEXMKSAQIKPNDVTLVSVLSACAQLG 121
Query: 165 NV 166
+V
Sbjct: 122 SV 123
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 74/140 (52%), Gaps = 7/140 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N EAL F+ +Q N T +S CS L +L +G +H +I + +V L
Sbjct: 291 NRGKEALALFNEMQA-MNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVAL 349
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+++MY KCG + A V E+P RN + +W AII+G+A NA+ A++ FSE
Sbjct: 350 GTALIDMYAKCGKITKAIQVFQELPGRNSL------TWTAIISGLALHGNAHGAIAYFSE 403
Query: 141 MRDRELIPDGLTVRSLLCAC 160
M D ++PD +T LL AC
Sbjct: 404 MIDNSVMPDEVTFLGLLSAC 423
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 54/171 (31%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY---------------- 88
TY L C+ L +++G ++ H+L D+ + N ++++
Sbjct: 153 TYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKS 212
Query: 89 -------------GKCGSLEDARVVSDEMPQRNVI-----------------------ES 112
G CG+LE AR + D M + ++ E
Sbjct: 213 CVRDLVSWNSMINGYCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEM 272
Query: 113 PD--LASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
PD + WNA+I G + EA++LF+EM+ + PD +T+ S L AC+
Sbjct: 273 PDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACS 323
>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 471
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 79/138 (57%), Gaps = 7/138 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILS-SKSQPDVVLQN 82
+E L +F + + + +T ++S C+ L + G++VH + + ++ DV ++N
Sbjct: 166 SEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKVDVNVKN 225
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MYGKCG++E A V + +R DL SWN +I G+A+ + EA+ LF EM+
Sbjct: 226 ALIDMYGKCGAIEIAMEVFKGIKRR------DLISWNTMINGLAAHGHGTEALDLFHEMK 279
Query: 143 DRELIPDGLTVRSLLCAC 160
+ + PD +T +LCAC
Sbjct: 280 NCGISPDKVTFVGVLCAC 297
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DV+ N +L Y G +E V DEM +RNV SWN +I G A +E +
Sbjct: 117 DVMSWNTVLEGYANIGDMEACERVFDEMLERNVF------SWNGLIKGYAQNGRVSEVLG 170
Query: 137 LFSEMRDR-ELIPDGLTVRSLLCACTS 162
F M D + P+ T+ +L AC
Sbjct: 171 SFKRMVDEGSVFPNDATLTLVLSACAK 197
>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g24000, mitochondrial; Flags: Precursor
gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
Length = 633
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y L+ C+ + L GR VH HIL S + D+V+ N +LNMY KCGSLE+AR V ++MP
Sbjct: 63 YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP 122
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
QR D +W +I+G + +A+ F++M P+ T+ S++ A +
Sbjct: 123 QR------DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAA 173
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 8/135 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A + Q RPS +YA L CSS L+ G+ VH +++ S + N +L+
Sbjct: 246 ALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLD 305
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY K GS+ DAR + D + +R+V+ SWN+++ A EA+ F EMR +
Sbjct: 306 MYAKSGSIHDARKIFDRLAKRDVV------SWNSLLTAYAQHGFGKEAVWWFEEMRRVGI 359
Query: 147 IPDGLTVRSLLCACT 161
P+ ++ S+L AC+
Sbjct: 360 RPNEISFLSVLTACS 374
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 8/136 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A F F P+ T + +I ++ R G ++H + +V + + +L+
Sbjct: 145 ALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLD 204
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
+Y + G ++DA++V D + RN + SWNA+IAG A S +A+ LF M
Sbjct: 205 LYTRYGLMDDAQLVFDALESRNDV------SWNALIAGHARRSGTEKALELFQGMLRDGF 258
Query: 147 IPDGLTVRSLLCACTS 162
P + SL AC+S
Sbjct: 259 RPSHFSYASLFGACSS 274
>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y L+ C+ + L GR VH HIL S + D+V+ N +LNMY KCGSLE+AR V ++MP
Sbjct: 63 YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP 122
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
QR D +W +I+G + +A+ F++M P+ T+ S++ A +
Sbjct: 123 QR------DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAA 173
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 8/135 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A + Q RPS +YA L CSS L+ G+ VH +++ S + N +L+
Sbjct: 246 ALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLD 305
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY K GS+ DAR + D + +R+V+ SWN+++ A EA+ F EMR +
Sbjct: 306 MYAKSGSIHDARKIFDRLAKRDVV------SWNSLLTAYAQHGFGKEAVWWFEEMRRVGI 359
Query: 147 IPDGLTVRSLLCACT 161
P+ ++ S+L AC+
Sbjct: 360 RPNEISFLSVLTACS 374
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 8/136 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A F F P+ T + +I ++ R G ++H + +V + + +L+
Sbjct: 145 ALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLD 204
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
+Y + G ++DA++V D + RN + SWNA+IAG A S +A+ LF M
Sbjct: 205 LYTRYGLMDDAQLVFDALESRNDV------SWNALIAGHARRSGTEKALELFQGMLRDGF 258
Query: 147 IPDGLTVRSLLCACTS 162
P + SL AC+S
Sbjct: 259 RPSHFSYASLFGACSS 274
>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
gi|194704572|gb|ACF86370.1| unknown [Zea mays]
gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
Length = 700
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 49/144 (34%), Positives = 80/144 (55%), Gaps = 8/144 (5%)
Query: 19 IQN-LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+QN + +AL F ++ TN R STYA + C++L L +GR++H+ ++ S D
Sbjct: 432 VQNDRFVDALHHFMLMRRGTN-RADWSTYASCLRACANLAVLHVGRQLHNLLVRSGHIND 490
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
N +++ Y KCG + +A+ + DEM + D+ SWNA+I G AS EA+++
Sbjct: 491 SFAGNALISTYAKCGRILEAKQIFDEMVYK------DIVSWNALIDGYASNGQGTEAIAV 544
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F EM + PD +T +L AC+
Sbjct: 545 FREMEANGVRPDEVTFVGILSACS 568
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
P+V+ +LN Y + G + DAR + D MP+RNV+ +WN ++ G S EA
Sbjct: 233 PNVISWVTLLNGYCRAGRIADARDLFDRMPERNVV------AWNVMLDGYVHLSPIEEAC 286
Query: 136 SLFSEM 141
LF EM
Sbjct: 287 KLFDEM 292
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D V N +++ Y +CG LE+A ++ MP + D+ SWN +IAG A ++A+
Sbjct: 358 DTVCWNTMISGYVQCGILEEAMLLFQRMPNK------DMVSWNTMIAGYAQDGQMHKAIG 411
Query: 137 LFSEMRDRELI 147
+F M R +
Sbjct: 412 IFRRMNRRNTV 422
Score = 45.4 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++ ++S + L+L R V D + K N +++ Y K G +DA + EM
Sbjct: 113 SWTVMVSCYARGGDLELARDVLDRMPGDKC---TACYNAMISGYAKNGRFDDAMKLLREM 169
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
P +PDL SWN+ +AG+ A+ F EM
Sbjct: 170 P------APDLVSWNSALAGLTQSGEMVRAVQFFDEM 200
Score = 43.5 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+ V N +L+ + G +++AR + D MP RN + SWNA+IA ++ +A S
Sbjct: 48 NTVTYNAMLSALARHGRIDEARALFDGMPGRNTV------SWNAMIAALSDHGRVADARS 101
Query: 137 LFSEMRDRE 145
LF M R+
Sbjct: 102 LFDRMPVRD 110
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+VV N +L+ Y +E+A + DEMP +N I SW II+G+A EA
Sbjct: 265 NVVAWNVMLDGYVHLSPIEEACKLFDEMPIKNSI------SWTTIISGLARAGKLQEAKD 318
Query: 137 LFSEM 141
L +M
Sbjct: 319 LLDKM 323
>gi|297742233|emb|CBI34382.3| unnamed protein product [Vitis vinifera]
Length = 705
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 7/118 (5%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
I CSSL SLQLG+ +H +I + D+ +QN +++MYGKCG L A VS+EMP R
Sbjct: 427 IQACSSLASLQLGQVIHGYITRAGLICDIFVQNSLVDMYGKCGRLHLAEKVSEEMPVR-- 484
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCACTSPSNV 166
DL SWN++IA N A+++F ++++ P+ +T ++L AC V
Sbjct: 485 ----DLGSWNSLIAAYGINGNGISALNVFKQLKNTGAHRPNAITFTNILSACAHAGLV 538
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++S+C++ R L+LG +H +IL S +V + N +++MY KCG +EDA + D MP +
Sbjct: 48 VLSSCAANRDLRLGSCIHTNILKSGLHTNVFVANSLMDMYAKCGRIEDAAKLFDHMPDKT 107
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
V+ SW ++++G +E +S+F M + L P+ T+ +L AC ++
Sbjct: 108 VV------SWTSMMSGHCQRGAFDEVISIFWRMLE-TLQPNEYTLAVILQACAQKRDL 158
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 70/123 (56%), Gaps = 8/123 (6%)
Query: 41 IRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
++P+ Y A ++ C+ R L+L + +H HI+ + D LQN +++ Y K G+L
Sbjct: 138 LQPNEYTLAVILQACAQKRDLKLVQLIHCHIIKTGFVMDAFLQNSLIDGYTKSGTL---- 193
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V ++++ +R + D+ SW ++I+G +A+ F EM++ + P+ +T+ S+L
Sbjct: 194 VAAEKLMKRLICR--DVVSWTSVISGCVLNGMVEKALLFFFEMQEDGVSPNTVTILSILQ 251
Query: 159 ACT 161
AC+
Sbjct: 252 ACS 254
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 19 IQNLYNEALVAF-DFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
I + E F +F + T A L+ CS + L+LG ++H + + P
Sbjct: 290 INGYFKEGFQIFCNFCFEGDGQYLSTETIATLLQGCSHSKCLKLGEQIHGYQIKHGFFPC 349
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+++N ++ MY + + A + +M R D+ SWN +I+ + S++ +A+ L
Sbjct: 350 TIVENSLIYMYAENERDDAAFQLFRKMSCR------DIVSWNTMISSLVKGSSSYQALML 403
Query: 138 FSEMRDRE----LIPDGLTVRSLLCACTS 162
SE+ + PD +T+ + + AC+S
Sbjct: 404 LSEVHSNGGSDMIYPDFVTILASIQACSS 432
>gi|356509887|ref|XP_003523674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Glycine max]
Length = 750
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T ++S CS L SL+ G +VH +I S ++ L +++MY KCG L+ +R+V D
Sbjct: 508 ATLVVVLSACSHLASLEKGERVHCYINESGFTLNLPLGTALIDMYAKCGQLQKSRMVFDS 567
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
M +++VI WNA+I+G A A+ +F M + ++P+G+T SLL AC
Sbjct: 568 MMEKDVI------CWNAMISGYGMNGYAESALEIFQHMEESNVMPNGITFLSLLSAC 618
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 10/117 (8%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSS-KSQPDVVLQNYILNMYGKCGSLEDA-RVVSDEM 104
A I++C+ L ++ LGR +H +++ ++ + N ++ MYGKCG + A R+
Sbjct: 410 ASAIASCAQLGAVNLGRSIHCNVIKGFLDGKNISVTNSLVEMYGKCGKMTFAWRIF---- 465
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
N E+ D+ SWN +I+ EA++LFS+M + P+ T+ +L AC+
Sbjct: 466 ---NTSET-DVVSWNTLISSHVHIKQHEEAVNLFSKMVREDQKPNTATLVVVLSACS 518
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 53 CSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIES 112
C +L ++ G +H ++ K+ +Q+ +L+MY KCG +A E+ +
Sbjct: 217 CGNLGAVSEGSCLHGVVV--KNGVASFIQSSVLDMYSKCGVPREAYRSFCEVIHK----- 269
Query: 113 PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
DL W ++I A E + LF EM++ E+ PDG+ V +L
Sbjct: 270 -DLLCWTSVIGVYARIGMMGECLRLFREMQENEIRPDGVVVGCVL 313
Score = 39.7 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 10/118 (8%)
Query: 7 TQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVH 66
T L +F S ++L+ L F ++ +N T ++S + L L G +H
Sbjct: 71 TFLYNSFLKSLFSRSLFPRVLSLFSHMRA-SNLSPNHFTLPIVVSAAAHLTLLPHGASLH 129
Query: 67 DHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124
L+SK+ +++ ++Y +CG +E AR V DE+P+R+V+ +W A+I G
Sbjct: 130 --ALASKTGLFHSSASFV-SLYSRCGRMELARKVFDEIPKRDVV------AWTALIIG 178
>gi|222635654|gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japonica Group]
Length = 749
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
Q EAL F + + + C ++ S + G ++H + + D+
Sbjct: 214 QGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLY 273
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ + +MY +C +L+ ARV IE+PDL SWN+I+ + +EA+ LFS
Sbjct: 274 VGCSLSDMYARCKNLDSARVAFYR------IEAPDLVSWNSIVNAYSVEGLLSEALVLFS 327
Query: 140 EMRDRELIPDGLTVRSLLCACTS 162
EMRD L PDG+TVR LLCAC
Sbjct: 328 EMRDSGLRPDGITVRGLLCACVG 350
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
+ C+ L + GR+VH H L S+ D+++QN ++ MY K G ++D ++ +
Sbjct: 142 VRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFER------ 195
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
I+ DL SW +IIAG A EA+ +F EM
Sbjct: 196 IKDKDLISWGSIIAGFAQQGFEMEALQVFREM 227
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++S + L ++ ++VH + + D +L N +++ Y KCGSL+DA + + M
Sbjct: 445 VLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNR 504
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
D+ SW+++I G A A EA LFS MR + P+ +T +L AC+
Sbjct: 505 -----DVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACS 552
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 59/128 (46%), Gaps = 30/128 (23%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHIL-SSKSQPDV------VLQNYILNMYGKCGSLEDAR 98
YA L+S CS LRSL GR+VH H++ SS S PD VL N+++ MYG
Sbjct: 47 YAALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYG--------- 97
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
RN + SW ++IA A +A+ LFS M D + S +
Sbjct: 98 --------RNPV------SWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVR 143
Query: 159 ACTSPSNV 166
ACT +V
Sbjct: 144 ACTELGDV 151
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 11/147 (7%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSS 72
N+ ++ L +EALV F ++++ +RP T L+ C +L GR +H +++
Sbjct: 311 NAYSVEGLLSEALVLFSEMRDSG---LRPDGITVRGLLCACVGRDALYHGRLIHSYLVKL 367
Query: 73 KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNAN 132
DV + N +L+MY +C L A V E I+ D+ +WN+I+ A ++
Sbjct: 368 GLDGDVSVCNSLLSMYARCSDLSSAMDVFHE------IKDQDVVTWNSILTACAQHNHPE 421
Query: 133 EAMSLFSEMRDRELIPDGLTVRSLLCA 159
E + LFS + E D +++ ++L A
Sbjct: 422 EVLKLFSLLNKSEPSLDRISLNNVLSA 448
>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
Length = 577
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 80/146 (54%), Gaps = 11/146 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y EA+ F + I P T + +IS C+ L L++G++VH + L + DV +
Sbjct: 268 YREAIAVFYKMMEEG---IIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYI 324
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ +++MY KCGSLE A +V +P++N L WN+II G+A+ A EA+ +F++
Sbjct: 325 GSALVDMYSKCGSLERALLVFFNLPKKN------LFCWNSIIEGLAAHGFAQEALKMFAK 378
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M + P+ +T S+ ACT V
Sbjct: 379 MEMESVKPNAVTFVSVFTACTHAGLV 404
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 74 SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
S+ + N ++N Y G+LE A + ++MP +++I SW +I G + E
Sbjct: 217 SEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDII------SWTTMIKGYSQNKRYRE 270
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACT 161
A+++F +M + +IPD +T+ +++ AC
Sbjct: 271 AIAVFYKMMEEGIIPDEVTMSTVISACA 298
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ PS TY+ L+ SS S + G + HI V +Q +++ Y G + +AR
Sbjct: 122 VSPSSYTYSSLVKA-SSFAS-RFGESLQAHIWKFGFGFHVKIQTTLIDFYSATGGIREAR 179
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
V DEMP+R+ I +W +++ + + A SL ++M ++
Sbjct: 180 KVFDEMPERDDI------AWTTMVSAYRRVLDMDSANSLANQMSEK 219
>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
Length = 577
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 80/146 (54%), Gaps = 11/146 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y EA+ F + I P T + +IS C+ L L++G++VH + L + DV +
Sbjct: 268 YREAIAVFYKMMEEG---IIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYI 324
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ +++MY KCGSLE A +V +P++N L WN+II G+A+ A EA+ +F++
Sbjct: 325 GSALVDMYSKCGSLERALLVFFNLPKKN------LFCWNSIIEGLAAHGFAQEALKMFAK 378
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M + P+ +T S+ ACT V
Sbjct: 379 MEMESVKPNAVTFVSVFTACTHAGLV 404
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 74 SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
S+ + N ++N Y G+LE A + ++MP +++I SW +I G + E
Sbjct: 217 SEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDII------SWTTMIKGYSQNKRYRE 270
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACT 161
A+++F +M + +IPD +T+ +++ AC
Sbjct: 271 AIAVFYKMMEEGIIPDEVTMSTVISACA 298
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ PS TY+ L+ SS S + G + HI V +Q +++ Y G + +AR
Sbjct: 122 VSPSSYTYSSLVKA-SSFAS-RFGESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIREAR 179
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
V DEMP+R+ I +W +++ + + A SL ++M ++
Sbjct: 180 KVFDEMPERDDI------AWTTMVSAYRRVLDMDSANSLANQMSEK 219
>gi|297741541|emb|CBI32673.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 69/116 (59%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ C IS +++ +L +GR H + + DV + N +++ Y KCGS+E++ +V + +
Sbjct: 526 TFPCAISAVANIAALGMGRSFHGSAVKFLGKFDVFIGNSLVSFYAKCGSMEESLLVFNTL 585
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P++N++ SWNA+I G A+ EA+ F +M+D L P+ +T+ LL AC
Sbjct: 586 PKKNIV------SWNALICGYANHGRGMEAIYFFEKMQDTGLRPNSVTLLGLLLAC 635
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 77/180 (42%), Gaps = 42/180 (23%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y+ A F I+P+ ++ +I + ++L+ L GR++H + + +V +
Sbjct: 370 YHHHEEAIYFFSRMLALNIKPNQFSFGTVIPSSTALQDLNSGRQLHACAIKMGLESNVFV 429
Query: 81 QNYILNMYGKCGSL-------------------------------EDARVVSDEMPQRNV 109
+ +++ Y K S+ +DA + +MP+RNV
Sbjct: 430 GSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFRKMPERNV 489
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYL 169
+ SWNA+I+G + EA++LF M +P+ R+ CA ++ +N+ L
Sbjct: 490 V------SWNAMISGYSQMGYNEEAVNLFVVMLREGTLPN---ERTFPCAISAVANIAAL 540
>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
Length = 1229
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 67/113 (59%), Gaps = 6/113 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ C +L LG+K+H +I K P+++L+N +++MY KCG LE AR V + M R+
Sbjct: 315 VLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRD 374
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
V+ SW A+I+ +A++LFS+++D L+PD + + L AC+
Sbjct: 375 VV------SWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACS 421
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 9/151 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y E + F + N R T+ C++ CS ++ +GRK+H + +
Sbjct: 119 GFYGEGVKVFGTM-CGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFV 177
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MYGKCG L +AR+V DEM +R+V+ SWN+++ G A ++A+ + E
Sbjct: 178 GNGLVSMYGKCGFLSEARLVLDEMSRRDVV------SWNSLVVGYAQNQRFDDALEVCRE 231
Query: 141 MRDRELIPDGLTVRSLLCAC--TSPSNVLYL 169
M ++ D T+ SLL A T+ NV+Y+
Sbjct: 232 MESVKISHDAGTMASLLPAVSNTTTENVMYV 262
>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Vitis vinifera]
Length = 684
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 75/130 (57%), Gaps = 10/130 (7%)
Query: 41 IRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I P+ + + ++S C+ L L++G+ VH + + ++ + + +++MYGKCGS+EDA
Sbjct: 306 IEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAE 365
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR--DRELIPDGLTVRSL 156
DEMP+RN L +WNA+I G A A+ A++LF EM + P+ +T +
Sbjct: 366 RAFDEMPERN------LVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCV 419
Query: 157 LCACTSPSNV 166
L AC+ +V
Sbjct: 420 LSACSRAGSV 429
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 12/162 (7%)
Query: 6 KTQLRFTFYNSQPIQN-LYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLG 62
++ + +T + +QN + AL F ++ ++ I+P+ T+ C SLRS +G
Sbjct: 71 RSVVTWTALIAGSVQNGRFTSALFHFSNMRRDS---IQPNDFTFPCAFKASGSLRSPLVG 127
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
++VH + + DV + +MY K G E+AR + DEMP+RN+ A+WNA +
Sbjct: 128 KQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNI------ATWNAYL 181
Query: 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+ ++A++ F E R P+ +T + L AC S
Sbjct: 182 SNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGAS 223
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 7/146 (4%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
++ Y++AL AF ++ + T+ ++ C+ L+LGR++H +L S + DV
Sbjct: 186 LEGRYDDALTAFIEFRHE-GWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADV 244
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N +++ YGKC + + ++ I P+ SW ++I +A +F
Sbjct: 245 SVANGLIDFYGKCHQVGCSEIIFSG------ISKPNDVSWCSMIVSYVQNDEEEKACLVF 298
Query: 139 SEMRDRELIPDGLTVRSLLCACTSPS 164
R + P V S+L AC S
Sbjct: 299 LRARKEGIEPTDFMVSSVLSACAGLS 324
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP-DVVLQNYILNMYGKCGSLEDARV 99
+ P++ A L+ + S + +LGR H I+ + P + N+++NMY K A++
Sbjct: 4 LSPNSLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQL 63
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
+ P R+V+ +W A+IAG A+ FS MR + P+ T
Sbjct: 64 LLSLTPNRSVV------TWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFT 110
>gi|225454898|ref|XP_002276015.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Vitis vinifera]
Length = 744
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 78/144 (54%), Gaps = 7/144 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ EAL +D + + + +T ++S CS L SL+ G KVH++I K + ++ +
Sbjct: 483 FAEALSLYDKMVLE-DLKPNSATLVSVLSACSHLASLEEGEKVHNYINGGKFEFNLSIAT 541
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG LE +R + + M +R+VI +WN +I+G +A A+ F +M
Sbjct: 542 ALIDMYAKCGQLEKSREIFNSMHERDVI------TWNVMISGYGMHGDARSAIEFFQQME 595
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
+ P+GLT ++L AC V
Sbjct: 596 ESSAKPNGLTFLAVLSACAHAGLV 619
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 9/147 (6%)
Query: 17 QPIQNLYNEALVAFDFLQNNTNF--RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS 74
Q +QN F FL+ F R+ + S + L R +H +++ +
Sbjct: 374 QMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNLMVSGYGATHLARSIHCYMIKNLM 433
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+V + N +++MYGK G+L AR + +P+ D+ +WN +I+ A + EA
Sbjct: 434 DENVSVNNSLIDMYGKSGNLTIARRIFCRIPR-------DIVTWNTLISSYAHCGHFAEA 486
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCACT 161
+SL+ +M +L P+ T+ S+L AC+
Sbjct: 487 LSLYDKMVLEDLKPNSATLVSVLSACS 513
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 10/120 (8%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
NFR + C +L +L GR +H ++ + V+Q+ +L+MY KCG+ E+A
Sbjct: 237 NFRTLEGGF----QACGNLGALLEGRCLHGLVVKTGMDYSQVVQSLLLSMYSKCGNPEEA 292
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
E+ +++I SW ++I+ + A E + +F EM + PDG+ + +L
Sbjct: 293 HRSFCEVLNKDII------SWTSMISAYSRMGWATECIDMFWEMLVSGIYPDGIVISCML 346
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 29 AFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHI--LSSKSQPDVVLQNYI 84
A DF Q P+ + ++++C+ L + GR +H + L S V +++
Sbjct: 117 ALDFYQWMRASEALPNHFTIPMIVASCAELELVNYGRSIHGLVSKLGLFSGSSAVGSSFV 176
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
MY KCG LE+A V DE+ R+V+ +W A++ G + + EM
Sbjct: 177 Y-MYSKCGVLEEAYGVFDEILFRDVV------AWTALVIGCVQNGESKMGLECLCEMH 227
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 54 SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESP 113
SSL++L + H I++S ++ + + ++++Y + + DE+P R
Sbjct: 46 SSLKTL---LQSHAFIITSGYSNNIFIASKLISLYASFHKPSCSTELFDEIPHR------ 96
Query: 114 DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
D WN+II S + A+ + MR E +P+ T+ ++ +C V Y
Sbjct: 97 DAFLWNSIIKAHFSNGEYSRALDFYQWMRASEALPNHFTIPMIVASCAELELVNY 151
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/135 (18%), Positives = 59/135 (43%), Gaps = 7/135 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
++ +A A +F Q +P+ T+ ++S C+ ++ G+ + + P++
Sbjct: 579 GMHGDARSAIEFFQQMEESSAKPNGLTFLAVLSACAHAGLVKEGKYLFGKMQDYSVAPNL 638
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
++++ G+ G+L++A + MP SPD W A+++ + + +
Sbjct: 639 KHYACMVDLLGRSGNLQEAEALVLSMPI-----SPDGGVWGALLSSCKIHNEIEMGIRIA 693
Query: 139 SEMRDRELIPDGLTV 153
D ++ DG V
Sbjct: 694 KHAIDSDVENDGYYV 708
>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 618
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 85/145 (58%), Gaps = 11/145 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
NEAL + +N + +I+P+ T ++S C+ L S++ G ++ ++ S +V +
Sbjct: 311 NEAL---ELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVA 367
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+ +L MY KCG++ AR + D++PQR D +WN++I G+A A +A++L++ M
Sbjct: 368 SALLGMYSKCGNIIKARQIFDKLPQR------DNVTWNSMIMGLAINGFAEDAIALYNRM 421
Query: 142 RDRELIPDGLTVRSLLCACTSPSNV 166
++ E+ P+ +T L+ ACT +V
Sbjct: 422 KEIEVKPNNITFVGLMTACTHAGHV 446
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 82/146 (56%), Gaps = 11/146 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y++ + F +Q+ P+ T A ++S C+ L L++G ++ + ++++
Sbjct: 209 YHKGWIIFQRMQDEM---CEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIV 265
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+L MY KCG+++D R+V D M +R+V+ +W+A+IAG A +NEA+ LF
Sbjct: 266 STAMLEMYVKCGAVDDGRLVFDHMARRDVV------TWSAMIAGYAQNGRSNEALELFEN 319
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M+ ++ P+ +T+ S+L AC +V
Sbjct: 320 MKSAQIKPNDVTLVSVLSACAQLGSV 345
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+L NEAL F + N N RI T + +C+SL ++ +G++VH ++ V
Sbjct: 75 SLNNEALRTFVSMHQN-NVRIVCFTIPPIFKSCASLLAIDVGKQVHSLVIRYGFHSSVFC 133
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
QN ++N Y K L A ++ D + ++ I ++N +I+ + A LF +
Sbjct: 134 QNALINFYAKINDLGSAELIFDGILVKDTI------AYNCLISAYSRSGEVLAARELFDK 187
Query: 141 MRDRELI 147
MRDR ++
Sbjct: 188 MRDRSIV 194
>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g01510, mitochondrial; Flags: Precursor
gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 584
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/117 (34%), Positives = 72/117 (61%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S C L SL++G +++D + +++++N L+M+ KCG+ E ARV+ +EM
Sbjct: 212 TVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEM 271
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
QRNV+ SW+ +I G A ++ EA++LF+ M++ L P+ +T +L AC+
Sbjct: 272 KQRNVV------SWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACS 322
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 7/147 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
+ LY EA+ F + ++ +T ++S+CS + L LG++ H +I +
Sbjct: 345 EGLYAEAVDLF-YRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSAT 403
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
L N I++MY KCG+L+ A V MP++N + SWN II +A EA+ +F
Sbjct: 404 LCNAIIDMYAKCGALQTAMDVFFGMPEKNAV------SWNVIIGALALHGYGKEAIEMFE 457
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNV 166
+M+ + PD +T LL AC+ V
Sbjct: 458 KMQASGVCPDEITFTGLLSACSHSGLV 484
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ C++ LG VH +QN ILN+Y CG + AR V D++ +R
Sbjct: 140 VLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERT 199
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165
L SWN++I G + + EA+ +F EM++ L PD T+ LL T N
Sbjct: 200 ------LVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGN 250
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 25/147 (17%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T L+S + + LGR VH H++ + + D ++ N +++MY KCG+L+ A+ V D+M
Sbjct: 237 TLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQM 296
Query: 105 PQRNVIE-------------------------SPDLASWNAIIAGVASPSNANEAMSLFS 139
++V+ ++ SWN+II EA+ LF
Sbjct: 297 LDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFY 356
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNV 166
M D ++ + T+ ++L +C+ ++
Sbjct: 357 RMCDSGVMANDTTLVAILSSCSHMGDL 383
>gi|147859488|emb|CAN83542.1| hypothetical protein VITISV_021357 [Vitis vinifera]
Length = 795
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 69/116 (59%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ C IS +++ +L +GR H + + DV + N +++ Y KCGS+E++ +V + +
Sbjct: 502 TFPCAISAVANIAALGMGRSFHGSAVKFLGKFDVFIGNSLVSFYAKCGSMEESLLVFNTL 561
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P++N++ SWNA+I G A+ EA+ F +M+D L P+ +T+ LL AC
Sbjct: 562 PKKNIV------SWNALICGYANHGRGMEAIYFFEKMQDTGLRPNSVTLLGLLLAC 611
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 77/180 (42%), Gaps = 42/180 (23%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y+ A F I+P+ ++ +I + ++L+ L GR++H + + +V +
Sbjct: 346 YHHHEEAIYFFSRMLALNIKPNQFSFGTVIPSATALQDLNSGRQLHACAIKMGLESNVFV 405
Query: 81 QNYILNMYGKCGSLEDARVVSDE-------------------------------MPQRNV 109
+ +++ Y K S+ +A+ ++ MP+RNV
Sbjct: 406 GSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFRXMPERNV 465
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYL 169
+ SWNA+I+G + EA++LF M +P+ R+ CA ++ +N+ L
Sbjct: 466 V------SWNAMISGYSQMGYNEEAVNLFVVMLREGXLPN---ERTFPCAISAVANIAAL 516
>gi|383130009|gb|AFG45724.1| Pinus taeda anonymous locus 0_12933_01 genomic sequence
Length = 147
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 6/123 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
T+ ++PSTYA L+ +C+ +L G+ +H HI D L N ++ MY +CG+L D
Sbjct: 31 TSIPVKPSTYAYLLQSCTKKNALPEGKLIHAHINERAPATDTFLHNSLIIMYVRCGNLTD 90
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
AR + D MP+R D SWN +IA A EA+ +F +M+ + P+ T S+
Sbjct: 91 ARKLFDRMPER------DDFSWNVMIAAYTKHGIAEEALRMFYQMQRTGIEPNSFTFVSV 144
Query: 157 LCA 159
L A
Sbjct: 145 LPA 147
>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g30700; AltName: Full=Protein DYW9
gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 792
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 7/146 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L +A+ F +Q + F P T C++S C+ L +L LG+ VHD + S+ + + +
Sbjct: 399 GLTEDAISLFREMQK-SEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYV 457
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
++ MY KCGS+ +AR + D M ++N + +WN +I+G EA+++F E
Sbjct: 458 STALIGMYAKCGSIAEARRLFDLMTKKNEV------TWNTMISGYGLHGQGQEALNIFYE 511
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M + + P +T +L AC+ V
Sbjct: 512 MLNSGITPTPVTFLCVLYACSHAGLV 537
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+ +L F L+ +T+ + STYA IS S R + GR +H + +++L +
Sbjct: 100 HSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSN 159
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
I+ MY K +EDAR V D MP+++ I WN +I+G E++ +F ++
Sbjct: 160 IVKMYFKFWRVEDARKVFDRMPEKDTI------LWNTMISGYRKNEMYVESIQVFRDL 211
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
R+R ST L+ L L +H + L S + + +Y K +E AR
Sbjct: 319 RLRSSTLVSLVPVSGHL---MLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARK 375
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ DE P+++ L SWNA+I+G +A+SLF EM+ E P+ +T+ +L A
Sbjct: 376 LFDESPEKS------LPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSA 429
Query: 160 C 160
C
Sbjct: 430 C 430
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 17/138 (12%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS---QPD 77
+Y E++ F L N + R+ +T ++ + L+ L+LG ++H L++K+ D
Sbjct: 199 EMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHS--LATKTGCYSHD 256
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
VL +I ++Y KCG ++ + E + PD+ ++NA+I G S ++SL
Sbjct: 257 YVLTGFI-SLYSKCGKIKMGSALFREFRK------PDIVAYNAMIHGYTSNGETELSLSL 309
Query: 138 FSEMRDRELIPDGLTVRS 155
F +EL+ G +RS
Sbjct: 310 F-----KELMLSGARLRS 322
>gi|361067067|gb|AEW07845.1| Pinus taeda anonymous locus 0_12933_01 genomic sequence
Length = 147
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 9/143 (6%)
Query: 19 IQNLYNEALV--AFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
I+NL N+ + A LQ T+ ++PSTYA L+ +C+ +L G+ +H HI
Sbjct: 12 IKNLCNQGQLKDAVHALQQ-TSIPVKPSTYAYLLQSCTKKNALPEGKLIHAHINERAPAK 70
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D L N ++ MY +C +L DAR V D MP+R D SWN +IA A EA+
Sbjct: 71 DTFLHNSLIMMYVRCRNLTDARKVFDRMPER------DDFSWNVMIAAYTKHGIAEEALR 124
Query: 137 LFSEMRDRELIPDGLTVRSLLCA 159
+F +M+ + P+ T S+L A
Sbjct: 125 MFYQMQRTGIEPNSFTFVSVLPA 147
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 82/140 (58%), Gaps = 11/140 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+ EAL F+ + + I P T A +IS C+ L +L LG+++H +I+ DV +
Sbjct: 224 FREALGVFNEMAKHG---ISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYI 280
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ +++MY KCGSL+ + ++ ++ ++N L WN++I G+A A EA+++F +
Sbjct: 281 GSALIDMYAKCGSLDRSLLMFFKLREKN------LFCWNSVIEGLAVHGYAEEALAMFDK 334
Query: 141 MRDRELIPDGLTVRSLLCAC 160
M ++ P+G+T S+L AC
Sbjct: 335 MEREKIKPNGVTFVSVLSAC 354
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 20/134 (14%)
Query: 17 QPIQ--NLYNEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSS 72
QP+Q LY + L A + P++Y LI C + L+ VH H+ +
Sbjct: 60 QPVQALELYVQMLRA----------NVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRN 109
Query: 73 KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNAN 132
V +Q +++ Y G +E++ V DEMP+R+V +W +++G+ + +
Sbjct: 110 GFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVF------AWTTMVSGLVRVGDMS 163
Query: 133 EAMSLFSEMRDREL 146
A LF M DR L
Sbjct: 164 SAGRLFDMMPDRNL 177
>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P Y I+ C+ ++L+ RKVH H+ SS+ D L N ++++Y KCGS+ +AR V D
Sbjct: 51 PRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFD 110
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
EM ++ D+ SW ++IAG A EA+ L M P+G T SLL A
Sbjct: 111 EMRRK------DMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKA 161
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 7/136 (5%)
Query: 26 ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
AL+ F + N F TY+ + S+ + L +L+ G+ VH H++ S+ + N +L
Sbjct: 237 ALMTFAEMLRN-GFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLL 295
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+MY K GS+ DAR V D ++ DL +WN ++ A EA+S F EMR
Sbjct: 296 DMYAKSGSMIDARKVFDR------VDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSG 349
Query: 146 LIPDGLTVRSLLCACT 161
+ + +T +L AC+
Sbjct: 350 IYLNQVTFLCILTACS 365
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
R +P+ T+A L+ + +GR++H + DV + + +L+MY +CG ++ A
Sbjct: 147 RFKPNGFTFASLLKAAGAHADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMA 206
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
V D++ +N + SWNA+I+G A + A+ F+EM
Sbjct: 207 TAVFDKLDSKNGV------SWNALISGFARKGDGETALMTFAEM 244
>gi|225436126|ref|XP_002274172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic [Vitis vinifera]
Length = 313
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ +CS L +L+LGR+VH ++++ D+ N +++MY KCG L AR V D M
Sbjct: 110 TLPAVLKSCSGLSALRLGRQVHCAVVANGLASDLATINALISMYSKCGDLAAARKVFDRM 169
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+RN++ +W+A++AG E LF M D +PDG+T ++L AC+
Sbjct: 170 TERNLV------TWSAMMAGYGVHGVFGEVFELFDGMVDAGEVPDGVTFTAVLAACS 220
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 84/148 (56%), Gaps = 11/148 (7%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
N +++AL F +Q +++P A ++S+C+ L +L LG+ VH+++ + + D
Sbjct: 764 NHFSDALEIFRQMQRA---KVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADT 820
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+++N +++MY KCGS ++A V EM ++ D SWN+II G+A+ E+++LF
Sbjct: 821 IMENSLIDMYMKCGSAKEALQVFKEMKEK------DTLSWNSIIIGLANNGFEKESLNLF 874
Query: 139 SEMRDRELIPDGLTVRSLLCACTSPSNV 166
M P+G+T +L AC + V
Sbjct: 875 QAMLTEGFRPNGVTFLGVLIACANAKLV 902
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C+ + +L G ++H+HI D+ + N ++++Y CG+L AR V DEM
Sbjct: 554 TFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEM 613
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++V+ SWN++I G + + + ++LF M++ + D +T+ ++ ACT
Sbjct: 614 VVKDVV------SWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACT 664
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 67/123 (54%), Gaps = 7/123 (5%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I PS T ++ S++ + +G +H + DV + N ++++Y K GS++++
Sbjct: 217 ISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSL 276
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V DEM R +L SW +II+G A + +A+ LF++MR + P+ +T S+L
Sbjct: 277 RVFDEMLDRR-----NLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLH 331
Query: 159 ACT 161
AC+
Sbjct: 332 ACS 334
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 74/166 (44%), Gaps = 26/166 (15%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N + + L F +QN + T ++S C+ L + + +I + DV L
Sbjct: 632 NRFKDILALFKLMQNE-GVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYL 690
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNV-------------------------IESPDL 115
N +++ +G+ G L+ A V M RN+ I DL
Sbjct: 691 GNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDL 750
Query: 116 ASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
SW+++I+G + ++ ++A+ +F +M+ ++ PD + + S++ +C
Sbjct: 751 ISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCA 796
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 22/136 (16%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
+ C+ L + ++H ++ + + ++N+Y CG L D+R+ +EMP +N
Sbjct: 96 LKACAGLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNA 155
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP-----DGLT-----------V 153
+ SWN +I G A A LF M R ++ DG T
Sbjct: 156 V------SWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALF 209
Query: 154 RSLLCACTSPSNVLYL 169
R ++ SPS + L
Sbjct: 210 RRMMAEGISPSEITVL 225
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+ V N ++ + G +E AR++ + MP RNV+ SW+ +I G EA++
Sbjct: 154 NAVSWNVVITGFAGWGEVEYARLLFERMPCRNVV------SWSGMIDGYTRACRPVEAVA 207
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
LF M + P +TV +++ A ++ +L
Sbjct: 208 LFRRMMAEGISPSEITVLAVVPALSNVGKIL 238
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
IE+P WN +I G+A +A++ + + + ++PD LT +L AC
Sbjct: 512 IEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACA 563
>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26782, mitochondrial; Flags: Precursor
gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 13/143 (9%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL+AF ++ + + R S++ C I CSSL + G++ H Q D+ + + +
Sbjct: 59 EALLAFSSMRKLSLYPTR-SSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSAL 117
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM--- 141
+ MY CG LEDAR V DE+P+RN++ SW ++I G NA +A+SLF ++
Sbjct: 118 IVMYSTCGKLEDARKVFDEIPKRNIV------SWTSMIRGYDLNGNALDAVSLFKDLLVD 171
Query: 142 ---RDRELIPDGLTVRSLLCACT 161
D + D + + S++ AC+
Sbjct: 172 ENDDDDAMFLDSMGLVSVISACS 194
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+ NEA F L N T + ++ S +L++G+ +HD ++ + DV++
Sbjct: 266 MSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVG 325
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
I++MY KCG +E AR D M +NV SW A+IAG +A +A+ LF M
Sbjct: 326 TSIIDMYCKCGRVETARKAFDRMKNKNV------RSWTAMIAGYGMHGHAAKALELFPAM 379
Query: 142 RDRELIPDGLTVRSLLCACT 161
D + P+ +T S+L AC+
Sbjct: 380 IDSGVRPNYITFVSVLAACS 399
Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
++ D+ SWN++IA +A ++ EA+ FS MR L P + + AC+S
Sbjct: 36 VDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSS 88
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS--LEDARVVSDEMPQ 106
+IS CS + + L +H ++ V + N +L+ Y K G + AR + D++
Sbjct: 189 VISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVD 248
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSLLCACT 161
+ D S+N+I++ A +NEA +F + +++ + + +T+ ++L A +
Sbjct: 249 K------DRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVS 298
>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/152 (30%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 25 EALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
E+L AF +++ I+P ST+ C I +CS+L L G++ H L + D+ + +
Sbjct: 65 ESLRAFSWMRK---LDIKPNRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSS 121
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM- 141
+++MY KCG L +ARV+ DE+P+RN++ +W ++I G +A+EA+ +F E
Sbjct: 122 ALIDMYSKCGKLSNARVLFDEIPRRNIV------TWTSLITGYVQNDDAHEALMVFKEFL 175
Query: 142 --------RDRELIPDGLTVRSLLCACTSPSN 165
+ D + + S+L AC+ SN
Sbjct: 176 FEKSEGNGEEVGTSVDSVAMISVLSACSRVSN 207
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + L+ C+ +L++G +HD ++ +V++ I++MY KCG E AR D M
Sbjct: 296 TLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGM 355
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++NV SW A+IAG A EA+ +F +M + P+ +T S+L AC+
Sbjct: 356 KEKNV------RSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACS 406
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++S CS + + + VH + + ++N +L+ Y KCG + +R V D+M +++
Sbjct: 198 VLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKD 257
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDG-----LTVRSLLCAC 160
V+ SWN++IA A + +A +F M L G +T+ +LL AC
Sbjct: 258 VV------SWNSMIAVYAQNGLSTDAFEVFHGM----LKAGGGKYNEVTLSTLLLAC 304
>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g09040, mitochondrial; Flags: Precursor
gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1028
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 86/164 (52%), Gaps = 11/164 (6%)
Query: 6 KTQLRFTFYNSQPIQN-LYNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLG 62
K+ + +T S QN Y EAL + ++++ + P +T+ ++ CS L SL+ G
Sbjct: 695 KSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDG---VLPDQATFVTVLRVCSVLSSLREG 751
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
R +H I D + N +++MY KCG ++ + V DEM +R+ ++ SWN++I
Sbjct: 752 RAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRS-----NVVSWNSLI 806
Query: 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
G A A +A+ +F MR ++PD +T +L AC+ V
Sbjct: 807 NGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKV 850
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 6/127 (4%)
Query: 35 NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSL 94
++ + I T+ L+STC++ L++G + H I+ K ++ + N +++MY KCG+L
Sbjct: 420 KSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGAL 479
Query: 95 EDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVR 154
EDAR + + M R D +WN II N +EA LF M ++ DG +
Sbjct: 480 EDARQIFERMCDR------DNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLA 533
Query: 155 SLLCACT 161
S L ACT
Sbjct: 534 STLKACT 540
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 11/141 (7%)
Query: 29 AFDFLQNNTNFRIRPSTYACLIST---CSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
AFD + N S ACL ST C+ + L G++VH + D+ + ++
Sbjct: 513 AFDLFKR-MNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLI 571
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+MY KCG ++DAR V +P+ +V+ S NA+IAG S +N EA+ LF EM R
Sbjct: 572 DMYSKCGIIKDARKVFSSLPEWSVV------SMNALIAGY-SQNNLEEAVVLFQEMLTRG 624
Query: 146 LIPDGLTVRSLLCACTSPSNV 166
+ P +T +++ AC P ++
Sbjct: 625 VNPSEITFATIVEACHKPESL 645
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 8/141 (5%)
Query: 28 VAFDFLQN--NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
VA ++ N ++ + ST ++S + +L LG VH + ++ + + ++
Sbjct: 310 VAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLV 369
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+MY KC +E A V + + ++N + WNA+I G A +++ M LF +M+
Sbjct: 370 SMYSKCEKMEAAAKVFEALEEKNDV------FWNAMIRGYAHNGESHKVMELFMDMKSSG 423
Query: 146 LIPDGLTVRSLLCACTSPSNV 166
D T SLL C + ++
Sbjct: 424 YNIDDFTFTSLLSTCAASHDL 444
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ ++STC+ +++ GR++H ++ + + +++MY KC + DAR V +
Sbjct: 162 TFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFE-- 219
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
I P+ W + +G EA+ +F MRD PD L +++
Sbjct: 220 ----WIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVI 268
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 13/151 (8%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSK-SQP 76
QN EA+V F Q + PS T+A ++ C SL LG + H I S
Sbjct: 607 QNNLEEAVVLF---QEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSE 663
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPD-LASWNAIIAGVASPSNANEAM 135
L +L MY + +A + E+ SP + W +++G + EA+
Sbjct: 664 GEYLGISLLGMYMNSRGMTEACALFSELS------SPKSIVLWTGMMSGHSQNGFYEEAL 717
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+ EMR ++PD T ++L C+ S++
Sbjct: 718 KFYKEMRHDGVLPDQATFVTVLRVCSVLSSL 748
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 65 VHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124
V + + +PD + ++N Y + G L+DAR++ EM SPD+ +WN +I+G
Sbjct: 248 VFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMS------SPDVVAWNVMISG 301
Query: 125 VASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
A+ F MR + T+ S+L A +N+
Sbjct: 302 HGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANL 343
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
+L++G+ VH L + L N I+++Y KC VS Q + +E D+ +
Sbjct: 75 ALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQ------VSYAEKQFDFLE-KDVTA 127
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
WN++++ +S + + F + + ++ P+ T +L C +NV +
Sbjct: 128 WNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEF 178
>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15130-like [Glycine max]
Length = 586
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 44/113 (38%), Positives = 66/113 (58%), Gaps = 6/113 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
+++ CS R L G++VH + V+ N +++MY KCG + +A V + +P RN
Sbjct: 10 ILNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNTLPVRN 69
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
VI SWNA+IAG + N EA++LF EMR++ +PDG T S L AC+
Sbjct: 70 VI------SWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACS 116
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 72/138 (52%), Gaps = 8/138 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK-SQPDVVLQNY 83
EA+ F L+ + + R+ + +I + L+ G+++H + + ++ + N
Sbjct: 191 EAMDLFRELRESRH-RMDGFVLSSIIGVFADFALLEQGKQMHAYTIKVPYGLLEMSVANS 249
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+L+MY KCG +A + EM +RNV+ SW +I G N+A+ LF+EM++
Sbjct: 250 VLDMYMKCGLTVEADALFREMLERNVV------SWTVMITGYGKHGIGNKAVELFNEMQE 303
Query: 144 RELIPDGLTVRSLLCACT 161
+ PD +T ++L AC+
Sbjct: 304 NGIEPDSVTYLAVLSACS 321
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 12/117 (10%)
Query: 45 TYACLISTCSSLRSLQLGRKVH----DHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
TY+ + CS + G ++H H +Q V ++++Y KC + +AR V
Sbjct: 107 TYSSSLKACSCADAAGEGMQIHAALIRHGFPYLAQSAVA--GALVDLYVKCRRMAEARKV 164
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
D + +++V+ SW+ +I G A N EAM LF E+R+ DG + S++
Sbjct: 165 FDRIEEKSVM------SWSTLILGYAQEDNLKEAMDLFRELRESRHRMDGFVLSSII 215
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 30/165 (18%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
++E++ FD ++ R+ PS T ++S CS L+ L +G++VH ++ K +P VL
Sbjct: 201 FDESMKLFDEMER---MRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVL 257
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIE-------------------------SPDL 115
+N +++MY CG ++ A + D M R+VI D
Sbjct: 258 ENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDF 317
Query: 116 ASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
SW A+I G + E +SLF EM+ + PD T+ S+L AC
Sbjct: 318 VSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTAC 362
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 7/141 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N + E L F +Q N + T +++ C+ L +L+LG + +I ++ + D +
Sbjct: 331 NRFKEVLSLFREMQA-ANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFV 389
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MY CG++E A + + MP R+ I SW A+I G+A EA+ +FS+
Sbjct: 390 GNALIDMYFNCGNVEKAIRIFNAMPHRDKI------SWTAVIFGLAINGYGEEALDMFSQ 443
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M + PD +T +LCACT
Sbjct: 444 MLKASITPDEVTCIGVLCACT 464
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY L+ + +++ GR++HDHI+ +V +QN ++++Y G + AR V D
Sbjct: 121 TYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRS 180
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ +V+ +WN +I+G +E+M LF EM ++P +T+ S+L AC+
Sbjct: 181 SKGDVV------TWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACS 231
Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSK--SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
LI TC S+ L +++H + + S P V Q + G +E AR+V D MP
Sbjct: 25 LIKTCKSMAQL---KQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMP- 80
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
P+ WN +I G + N A+S++ EM +R ++PD T LL
Sbjct: 81 -----GPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLL 126
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 74/140 (52%), Gaps = 7/140 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N EAL F+ +Q N T +S CS L +L +G +H +I + +V L
Sbjct: 319 NRGKEALALFNEMQA-MNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVAL 377
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+++MY KCG + A V E+P RN + +W AII+G+A NA+ A++ FSE
Sbjct: 378 GTALIDMYAKCGKITKAIQVFQELPGRNSL------TWTAIISGLALHGNAHGAIAYFSE 431
Query: 141 MRDRELIPDGLTVRSLLCAC 160
M D ++PD +T LL AC
Sbjct: 432 MIDNSVMPDEVTFLGLLSAC 451
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 27/163 (16%)
Query: 26 ALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
A A +F + I+P T ++S+C+ L L LGR+ H +I + + V L N
Sbjct: 189 AYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANA 248
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVI-----------------------ESP--DLASW 118
+++MY KCG+LE AR + D M + ++ E P D+ W
Sbjct: 249 LMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPW 308
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
NA+I G + EA++LF+EM+ + PD +T+ S L AC+
Sbjct: 309 NAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACS 351
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY L C+ L +++G ++ H+L D+ + N ++++ CG L+ AR + D+
Sbjct: 109 TYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKS 168
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R DL SWN++I G A EA++ + EM+ + PD +T+ ++ +C
Sbjct: 169 CVR------DLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCA 219
>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 550
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 52/140 (37%), Positives = 82/140 (58%), Gaps = 10/140 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
NEAL F ++ T ++ P+ A + +S C+ LR+L+ GR +H +I K + +V L
Sbjct: 255 NEALDLF--MEMVTGDKMIPNEAALVSAVSACAQLRALEEGRWLHSYIKEKKLRINVTLG 312
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+L+MYGKCGS+ DA V + M +RNV SWN++IAG+A EA++LF +M
Sbjct: 313 TVLLDMYGKCGSILDAAGVFNLMSERNV------NSWNSMIAGLALNGCGKEALALFWKM 366
Query: 142 RDRELIPDGLTVRSLLCACT 161
+ P+ +T +LL C+
Sbjct: 367 QFVGPSPNAITFIALLTGCS 386
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
+I+ SS R L+ RKV D S S DVV ++ + G +++AR + D MP +N
Sbjct: 150 MIALYSSFRELRSARKVFDE---SYSLVDVVSWTTLITGFSNSGQIDEARKIFDLMPLKN 206
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+ SWNA+I+G A S NEA LF EM DR+
Sbjct: 207 TV------SWNAMISGYAGSSRINEARKLFDEMPDRD 237
>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
Length = 446
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 12 TFYNSQPIQNLYN---------------EALVAFDFLQNNTNFRIRPSTYACLISTCSSL 56
+ ++ P++NL N EAL AF +Q F T A ++S CS L
Sbjct: 147 SIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAE-GFEPDEVTIASVLSACSQL 205
Query: 57 RSLQLGRKVHDHILSSKSQPDVVLQNYILN----MYGKCGSLEDARVVSDEMPQRNVIES 112
L G+K+H H+++ K + L ++LN MY KCG L +AR++ + M RN
Sbjct: 206 GLLDAGKKIH-HMMNHKG---IKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRN---- 257
Query: 113 PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
A WN++I+G A + EA+ F M D PD +T S+L AC V
Sbjct: 258 --RACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFV 309
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 62/117 (52%), Gaps = 10/117 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ + ++ R+V + + Q + + +++ Y K G++++AR + D +
Sbjct: 97 TWTVMVDGYARNAEMEAAREVFEGM----PQRNFFAWSSMISGYCKKGNVKEARSIFDRI 152
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P RN L +WN++I+G A + EA+ F +M+ PD +T+ S+L AC+
Sbjct: 153 PVRN------LVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACS 203
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG++ D+R V D MP+RN + +WNA+I G ++ A+ LF +M R
Sbjct: 9 MYAKCGNVVDSRKVFDYMPERNAV------TWNAMICGYLGNGDSKSAVLLFEKMSIRTA 62
Query: 147 I 147
+
Sbjct: 63 V 63
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+VV +++ Y + +E AR V + MPQRN +W+++I+G N EA S
Sbjct: 94 NVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFF------AWSSMISGYCKKGNVKEARS 147
Query: 137 LFSEMRDRELI 147
+F + R L+
Sbjct: 148 IFDRIPVRNLV 158
>gi|15128398|dbj|BAB62584.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 612
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 46/122 (37%), Positives = 72/122 (59%), Gaps = 11/122 (9%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSS----KSQPDVVLQNYILNMYGKCGSLEDARVV 100
T A ++ C+ +LQ+GR+VH +I++S D N +++MY K G+L++AR +
Sbjct: 308 TVAAVLPACAQTAALQVGREVHGYIVTSGLACHGALDSFACNALVDMYAKSGALDEARRI 367
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE-LIPDGLTVRSLLCA 159
D M QR D+ASWN +I G AS + EA+ LF +M + E L+PD +T+ L A
Sbjct: 368 FDRMQQR------DVASWNIMIDGYASHGHGKEALELFCQMTEVERLLPDEITLLGALSA 421
Query: 160 CT 161
C+
Sbjct: 422 CS 423
Score = 72.0 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 76/138 (55%), Gaps = 4/138 (2%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ A+ F ++ + I T ++S C++ L G VH ++ S + +V + N
Sbjct: 183 FGHAVECFRMMREDGEVEISSFTVTGILSVCTATADLGHGAAVHGLVVKSAFEQEVSVCN 242
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++++YGKC ++DA +V + M ++++ DL SWN++++ + ++ M LFS MR
Sbjct: 243 ALVDLYGKCHKVDDAAMVFEGMA--DIVK--DLFSWNSMLSALHYSADHAGTMKLFSRMR 298
Query: 143 DRELIPDGLTVRSLLCAC 160
+ PD +TV ++L AC
Sbjct: 299 RVAVWPDAVTVAAVLPAC 316
Score = 36.6 bits (83), Expect = 4.1, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR-DRELIPDG 150
G + AR + E+P+R+V+ WNA++ G A A+ F MR D E+
Sbjct: 150 GLADHARRLFGELPRRDVV------VWNAMVNGFARLGCFGHAVECFRMMREDGEVEISS 203
Query: 151 LTVRSLLCACTSPSNV 166
TV +L CT+ +++
Sbjct: 204 FTVTGILSVCTATADL 219
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 74/140 (52%), Gaps = 7/140 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N EAL F+ +Q N T +S CS L +L +G +H +I + +V L
Sbjct: 276 NRGKEALALFNEMQA-MNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVAL 334
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+++MY KCG + A V E+P RN + +W AII+G+A NA+ A++ FSE
Sbjct: 335 GTALIDMYAKCGKITKAIQVFQELPGRNSL------TWTAIISGLALHGNAHGAIAYFSE 388
Query: 141 MRDRELIPDGLTVRSLLCAC 160
M D ++PD +T LL AC
Sbjct: 389 MIDNSVMPDEVTFLGLLSAC 408
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 80/148 (54%), Gaps = 12/148 (8%)
Query: 26 ALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
A A +F + I+P T ++S+C+ L L LGR+ H +I + + V L N
Sbjct: 161 AYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANA 220
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVI--------ESP--DLASWNAIIAGVASPSNANE 133
+++MY KCG+LE AR + D M + ++ E P D+ WNA+I G + E
Sbjct: 221 LMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKE 280
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACT 161
A++LF+EM+ + PD +T+ S L AC+
Sbjct: 281 ALALFNEMQAMNINPDEVTMVSCLSACS 308
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY L C+ L +++G ++ H+L D+ + N ++++ CG L+ AR + D+
Sbjct: 81 TYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKS 140
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R DL SWN++I G A EA++ + EM+ + PD +T+ ++ +C
Sbjct: 141 CVR------DLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCA 191
>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
Length = 792
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 79/136 (58%), Gaps = 9/136 (6%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYIL 85
A D Q T+ + P T A +S C+ SLQLGR++H +L ++S + +++Q ++
Sbjct: 530 ALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALV 589
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
NMYG+CG LE AR + ++M QR+V+ SW A+ + A +A++ + L+ EM
Sbjct: 590 NMYGRCGRLETARSMFEDMGQRDVL------SWTAMTSAYAQQGHADQVLDLYLEMVLHG 643
Query: 146 LIPDGLTVRSLLCACT 161
+ P+ +T S+L C+
Sbjct: 644 IRPNEITFTSILVGCS 659
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 8/122 (6%)
Query: 42 RPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP+ T++ +++ CSS L+ G K+H H+ +S+ +V +QN ++ MY KCGSLE A+
Sbjct: 442 RPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSELASNVAVQNALVTMYAKCGSLELAKS 501
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ ++ DL SWNA+I A EA+ L+ M + ++PD +T+ S L A
Sbjct: 502 AFEASGRK------DLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSA 555
Query: 160 CT 161
C
Sbjct: 556 CA 557
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 72/119 (60%), Gaps = 8/119 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLEDARVVSD 102
TY ++ +CS++ SL+ R++H I+ + + ++ LQN ++NMYGKCGS+E+AR V D
Sbjct: 146 TYFIVLGSCSAVGSLREAREIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFD 205
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ R+ + SW ++I+ A+ +EA+ L+ +M + PD +T S L ACT
Sbjct: 206 GIKNRDAV------SWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACT 258
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 9/145 (6%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y EAL + + ++ TY + C+SL +L+ G+ +H + Q +V+
Sbjct: 325 YREALDLYGRM-DHEGVHADGVTYVTALGACASLGALKEGKAIHSRVFECGFQS-LVVHT 382
Query: 83 YILNMYGKCGSLEDARVVSDEMPQ-RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+L MY KCG L+ AR V + + Q RNV W A+I+ A + EA+ L+ +M
Sbjct: 383 ALLTMYAKCGELDAARAVFNRVRQKRNVY------CWTAMISAYAQAGHTQEALELYDQM 436
Query: 142 RDRELIPDGLTVRSLLCACTSPSNV 166
P+ T ++L AC+S ++
Sbjct: 437 VAEGTRPNEYTFSNVLAACSSSGDL 461
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 12/136 (8%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A D Q I+P T+ + C+ L G+ +H I+SS + D V + ++N
Sbjct: 231 ALDLYQQMDADGIQPDSITFTSALLACTKLVD---GKAIHARIVSSNMESDFV-GSALIN 286
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY +CG + AR +++ ++V+ W +++ + EA+ L+ M +
Sbjct: 287 MYARCGDVSSARQAFEKIQNKHVV------CWTSLMTAYVQTCHYREALDLYGRMDHEGV 340
Query: 147 IPDGLTVRSLLCACTS 162
DG+T + L AC S
Sbjct: 341 HADGVTYVTALGACAS 356
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y L+ C L SL G+ VH H+L + + L N ++ MYG CG + AR
Sbjct: 45 YDELLQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAF---- 100
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165
+N +A +N +++ N A+ L+ M + PD +T +L +C++ +
Sbjct: 101 -QNFASIKAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGS 159
Query: 166 V 166
+
Sbjct: 160 L 160
>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
Length = 694
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 80/141 (56%), Gaps = 8/141 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A + Q ++P+ T ++S C+ + GR VH +I ++ + L N +L+
Sbjct: 221 ALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLD 280
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIA------GVASPSNANEAMSLFSE 140
MY KCGS+EDA+ + D+MP+++++ + A I G+A + +A++LFS+
Sbjct: 281 MYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSK 340
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M++ ++ P+ +T ++LCAC+
Sbjct: 341 MQEDKVKPNAVTFTNILCACS 361
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 11/159 (6%)
Query: 7 TQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVH 66
T +R +S P Q+L L+ L + +F + T+ LI S L L G+ H
Sbjct: 105 TLIRAYASSSNPHQSL----LIFLRMLHQSPDFPDK-FTFPFLIKAASELEELFTGKAFH 159
Query: 67 DHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVA 126
++ DV + N +++ Y KCG L V P+R+V+ SWN++I
Sbjct: 160 GMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVV------SWNSMITAFV 213
Query: 127 SPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165
EA+ LF EM + + P+G+T+ +L AC S+
Sbjct: 214 QGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSD 252
>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Glycine max]
Length = 815
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 70/118 (59%), Gaps = 6/118 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+TYA ++ C++L SL LG+++H I+ S +V + +++MY KCGS+++A + E
Sbjct: 443 ATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQE 502
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
MP RN + SWNA+I+ A + A+ F +M L P+ ++ S+LCAC+
Sbjct: 503 MPVRNSV------SWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACS 554
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 9/138 (6%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
E+L F LQ T F R +A L+S ++ +L++GR++H + + + +V++ N +
Sbjct: 324 ESLELFRELQF-TRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSL 382
Query: 85 LNMYGKCGSLEDA-RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++MY KC +A R+ +D Q +V W A+I+G + + LF EM
Sbjct: 383 VDMYAKCDKFGEANRIFADLAHQSSV-------PWTALISGYVQKGLHEDGLKLFVEMHR 435
Query: 144 RELIPDGLTVRSLLCACT 161
++ D T S+L AC
Sbjct: 436 AKIGADSATYASILRACA 453
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118
L RK+ D + +V+ N ++ Y K G+L AR + D M QR+V+ +W
Sbjct: 58 LGAARKLFDEM----PHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVV------TW 107
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+I G A + EA +LF++M ++PD +T+ +LL T +V
Sbjct: 108 TMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESV 155
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+N + F + FR T+A +++ + ++ G++VH ++ +V + N
Sbjct: 220 FNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVAN 279
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+L+ Y K + +AR + EMP+ + I S+N +I A E++ LF E++
Sbjct: 280 ALLDFYSKHDRIVEARKLFYEMPEVDGI------SYNVLITCCAWNGRVEESLELFRELQ 333
Query: 143 ----DRELIP 148
DR P
Sbjct: 334 FTRFDRRQFP 343
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+N L AF+ + + P T A L+S + S+ +VH H++ +++
Sbjct: 117 HNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMV 176
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +L+ Y K SL A + M ++ D ++NA++ G + ++A++LF +
Sbjct: 177 CNSLLDSYCKTRSLGLACHLFKHMAEK------DNVTFNALLTGYSKEGFNHDAINLFFK 230
Query: 141 MRDRELIPDGLTVRSLLCA 159
M+D P T ++L A
Sbjct: 231 MQDLGFRPSEFTFAAVLTA 249
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 79/146 (54%), Gaps = 13/146 (8%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS 74
NS +LY E + A F++ +T+ TY L+ + ++LG +H ++ S
Sbjct: 100 NSVSAVSLYRE-MRASGFVEPDTH------TYPFLLKAVGKMADVRLGETIHSVVIRSGF 152
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+ +QN +L++Y CG + A V D+MP++ DL +WN++I G A EA
Sbjct: 153 GSLIYVQNSLLHLYANCGDVASAYKVFDKMPEK------DLVAWNSVINGFAENGKPEEA 206
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCAC 160
++L++EM + + PDG T+ SLL AC
Sbjct: 207 LALYTEMDLKGIKPDGFTIVSLLSAC 232
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 69/124 (55%), Gaps = 9/124 (7%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I+P T L+S C+ + +L LG++ H +++ ++ N +L++Y +CG +E+A+
Sbjct: 218 IKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAK 277
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE-LIPDGLTVRSLL 157
+ DEM +N + SW ++I G+A EA+ LF M +E L+P +T +L
Sbjct: 278 TLFDEMVDKNSV------SWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGIL 331
Query: 158 CACT 161
AC+
Sbjct: 332 YACS 335
>gi|242092520|ref|XP_002436750.1| hypothetical protein SORBIDRAFT_10g008110 [Sorghum bicolor]
gi|241914973|gb|EER88117.1| hypothetical protein SORBIDRAFT_10g008110 [Sorghum bicolor]
Length = 672
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 9/151 (5%)
Query: 13 FYNSQPIQNLYNEALVAFDFLQN---NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHI 69
F++ P Q+ + + QN + ++ +++ C+SL L+LG ++H +
Sbjct: 359 FFDRMPEQSTITWNTMISGYEQNEDYDCTIKLFQRMLEVVLAACASLAMLRLGAQLH-QL 417
Query: 70 LSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPS 129
+ PD N ++ MY +CG L A+ + +M + DL SWNA+I G
Sbjct: 418 IEKSFLPDTATNNALMTMYSRCGELTSAKAIFSQMHTQK-----DLVSWNALIGGYEHHG 472
Query: 130 NANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
NA EA+ LF EMR +++P +T SLL AC
Sbjct: 473 NATEALRLFQEMRSAKVMPTHITFISLLSAC 503
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+VV N ++ Y + G + AR + DEMP + DL +WN +IAG S+ EA
Sbjct: 274 NVVSWNSMMMCYIRTGDVCSARALFDEMPFK------DLVTWNTMIAGYTQASDMEEAEK 327
Query: 137 LFSEMRDRELIPDGLTVRSL 156
LF E+ + + L +R
Sbjct: 328 LFGEVPAPDAVTWNLMIRGF 347
Score = 42.7 bits (99), Expect = 0.045, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 17/91 (18%)
Query: 57 RSLQLGRKVHDHILSSKS------QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI 110
RSLQ DH+ +++ Q D V + +L Y + G +E+A+ + DEMP RN
Sbjct: 110 RSLQ-----PDHLAAARRLFDEMPQRDAVSWSTLLGAYTRRGLMEEAQRLFDEMPHRNP- 163
Query: 111 ESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
ASWN ++ G + +A+++F M
Sbjct: 164 -----ASWNTMVTGFFAIGQMRKALNVFEAM 189
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 13/103 (12%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC---GSLEDARVVS 101
T+ ++ S R ++ R D + D++ N +L Y + L AR +
Sbjct: 69 TWNSFLAALSRRRDVRAARSFFD----AMPMRDIISWNTLLAAYARSLQPDHLAAARRLF 124
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
DEMPQR D SW+ ++ EA LF EM R
Sbjct: 125 DEMPQR------DAVSWSTLLGAYTRRGLMEEAQRLFDEMPHR 161
Score = 37.0 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 8/111 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKV-HDHILSSKSQPDVV 79
+ A A Q + ++ P+ T+ L+S C + + G+ V H + P V
Sbjct: 471 HGNATEALRLFQEMRSAKVMPTHITFISLLSACGNAGLVSEGQVVFHTMVHEYGLAPRVE 530
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN 130
++N+ G+ G LEDA V MP +PD A W A + + N
Sbjct: 531 HYAALVNLIGRHGQLEDALEVIKSMPI-----APDRAVWGAFLGACTAKKN 576
>gi|147836510|emb|CAN70889.1| hypothetical protein VITISV_005594 [Vitis vinifera]
Length = 630
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 7/118 (5%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
I CSSL SLQLG+ +H +I + D+ +QN +++MYGKCG L A VS+EMP R
Sbjct: 363 IQACSSLASLQLGQVIHGYITRAGLICDIFVQNSLVDMYGKCGRLHLAEKVSEEMPVR-- 420
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCACTSPSNV 166
DL SWN++IA N A+++F ++++ P+ +T ++L AC V
Sbjct: 421 ----DLGSWNSLIAAYGINGNGISALNVFKQLKNTGAHRPNAITFTNILSACAHAGLV 474
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++S+C++ R L+LG +H +IL S +V + N +++MY KCG +EDA + D MP +
Sbjct: 48 VLSSCAANRDLRLGSCIHTNILKSGLHTNVFVANSLMDMYAKCGRIEDAAKLFDHMPDKT 107
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
V+ SW ++++G +E +S+F M + L P+ T+ +L AC ++
Sbjct: 108 VV------SWTSMMSGHCQRGAFDEVISIFWRMLE-TLQPNEYTLAVILQACAQKRDL 158
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 65/125 (52%), Gaps = 14/125 (11%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++ C+ R L+L + +H HI+ + D LQN +++ Y K G+L V ++++
Sbjct: 144 TLAVILQACAQKRDLKLVQLIHCHIIKTGFVMDAFLQNSLIDGYTKSGTL----VAAEKL 199
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP---DGL-----TVRSL 156
+R + D+ SW ++I+G +A+ F EM++ + P DG T+ +L
Sbjct: 200 MKRLICR--DVVSWTSVISGCVLNGMVEKALLFFFEMQEDGVSPNTGDGQYLSTETIATL 257
Query: 157 LCACT 161
L C+
Sbjct: 258 LQGCS 262
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A L+ CS + L+LG ++H + + P +++N ++ MY + + A + +M
Sbjct: 253 TIATLLQGCSHSKCLKLGEQIHGYQIKHGFFPCTIVENSLIYMYAENERDDAAFQLFRKM 312
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE----LIPDGLTVRSLLCAC 160
R D+ SWN +I+ + S++ +A+ L SE+ + PD +T+ + + AC
Sbjct: 313 SCR------DIVSWNTMISSLVKGSSSYQALMLLSEVHSNGGSDMIYPDFVTILASIQAC 366
Query: 161 TS 162
+S
Sbjct: 367 SS 368
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 17/150 (11%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILS------SKSQP 76
EAL F L+ + + P+ T+A ++ C+ L L LG + H H+L S +
Sbjct: 369 EALSLFCLLKRES---VCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEED 425
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D+ + N +++MY KCG +E+ +V +M +R D SWNA+I G A NEA+
Sbjct: 426 DIFVGNSLIDMYVKCGCVEEGYLVFRKMMER------DCVSWNAMIIGFAQNGYGNEALE 479
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
LF EM D PD +T+ +L AC V
Sbjct: 480 LFREMLDSGEKPDHITMIGVLSACGHAGFV 509
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 7/142 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F + F + T+A +S CS L + G ++H I S DV + + +
Sbjct: 135 EALYYFAMMHKE-GFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSAL 193
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MY KCG++ DA+ V DEM RNV+ SWN++I A EA+ +F M +
Sbjct: 194 VDMYSKCGNVNDAQQVFDEMGDRNVV------SWNSLITCYEQNGPAVEALKVFQVMLES 247
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
+ PD +T+ S++ AC S S +
Sbjct: 248 WVEPDEVTLASVISACASLSAI 269
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 26/148 (17%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILS-SKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T A +IS C+SL ++++G++VH ++ K + D++L N ++MY KC +++AR + D
Sbjct: 255 TLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDS 314
Query: 104 MPQRNVIESP-------------------------DLASWNAIIAGVASPSNANEAMSLF 138
MP RNVI ++ SWNA+IAG EA+SLF
Sbjct: 315 MPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLF 374
Query: 139 SEMRDRELIPDGLTVRSLLCACTSPSNV 166
++ + P T ++L AC +++
Sbjct: 375 CLLKRESVCPTHYTFANILKACADLADL 402
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 7/103 (6%)
Query: 44 STYACLISTCSSLRSLQLG-RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
S +A L+ +C L+ + R VH ++ S +V +QN +++ Y KCGSLED R + D
Sbjct: 20 SPFAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFD 79
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+MPQRNV +WN+++ G+ +EA SLF M +R+
Sbjct: 80 KMPQRNVF------TWNSVVTGLTKLGFLDEADSLFRSMPERD 116
>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 83/143 (58%), Gaps = 8/143 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
N ALV F+ + + + I ++ ++ C L+ L++GR+VH ++ K ++ N
Sbjct: 205 NTALVVFNQMVD-SGVEIDGASVVSVLPACGYLKELEVGRRVHG-LVEEKVLGKKIVSNA 262
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+++MY KCGS+++AR+V D M +R+V+ SW ++I G +A A+SLF M+
Sbjct: 263 LVDMYAKCGSMDEARLVFDNMVERDVV------SWTSMINGYILNGDAKSALSLFKIMQI 316
Query: 144 RELIPDGLTVRSLLCACTSPSNV 166
L P+ +T+ +L AC S +N+
Sbjct: 317 EGLRPNSVTIALILLACASLNNL 339
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY +I CS L ++ GR +H L SK + + N +L MY CG +E+AR V D M
Sbjct: 124 TYPFVIKACSELLLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAM 183
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+++V+ SWN +I G AN A+ +F++M D + DG +V S+L AC
Sbjct: 184 KEKSVV------SWNTMINGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPAC 233
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 7/132 (5%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
I +T L+ L LQ ++ +++ S ++ + ++++Y KCGSLE A +
Sbjct: 422 INAATCNSLLPAYGILADLQPVNNINSYLMRSGFVSNIQVATSLIDIYSKCGSLESAHKI 481
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ +P ++ D+ W+ IIAG + A+SLF +M + P+ +T S+L +C
Sbjct: 482 FNTIP----VDVQDIFVWSIIIAGYGMHGHGETAVSLFKQMVQSGVKPNDVTFTSVLQSC 537
Query: 161 TSPSNV---LYL 169
+ V LYL
Sbjct: 538 SHAGMVDDGLYL 549
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP+ T A ++ C+SL +L+ GR +H ++ + +V ++ +++MY KC L +
Sbjct: 319 LRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSF 378
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V ++ + WNA+++G A EA+ LF +M + + T SLL
Sbjct: 379 SVFTRTSRKKTV------PWNALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLP 432
Query: 159 A 159
A
Sbjct: 433 A 433
Score = 43.5 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Query: 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
+ + Y L+ + +SL +++H H+++S + +++ ++ Y CG + +AR +
Sbjct: 20 KTTQYQSLLKHYGAAQSLTSTKQLHAHLITS-GLLSIDIRSVLVATYAHCGYVHNARKLF 78
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR-DRELIPDGLTVRSLLCAC 160
DE+ QR + +N +I + + EAM +F EM ++ PD T ++ AC
Sbjct: 79 DELRQRGTL------LYNFMIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKAC 132
Query: 161 T 161
+
Sbjct: 133 S 133
>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Brachypodium distachyon]
Length = 773
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
ST +IS C++L +L+ G +H ++ + + DV + +++MY KCG L AR + D
Sbjct: 528 STLITVISACANLAALEHGELLHSYVKNMGLESDVSISTALVDMYTKCGQLGTARGIFDS 587
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
M QR+V+ +WN +I+G AN+A+ LFSEM + P+ LT ++L AC
Sbjct: 588 MLQRDVV------TWNVMISGYGMHGEANQALKLFSEMEAGSIKPNSLTFLAILSAC 638
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 67/114 (58%), Gaps = 8/114 (7%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA-RVVSDEMPQRN 108
IS+CS L L+LG+ VH + + + + N ++ MYG+CG+ E A ++ + +R+
Sbjct: 433 ISSCSRLGRLRLGQSVHCYSIKCLLDENSI-TNSLIGMYGRCGNFELACKIFAVAKLRRD 491
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
V+ +WNA+I+ + +N+A+SL+ +M ++ P+ T+ +++ AC +
Sbjct: 492 VV------TWNALISSYSHVGRSNDALSLYGQMLTEDVKPNSSTLITVISACAN 539
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 6/140 (4%)
Query: 27 LVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
LV L ++ R T + C L L GR +H + + + ++ + + +
Sbjct: 205 LVQMIRLAGDSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKEGIRDCALVVSALFS 264
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KC EDA ++ E+ +++V+ SW +I A EA+ LF EM L
Sbjct: 265 MYSKCDMTEDACILFPELTEKDVV------SWTGLIGAYCRRGLAREAVELFQEMEQSGL 318
Query: 147 IPDGLTVRSLLCACTSPSNV 166
PD + V +L S +NV
Sbjct: 319 QPDEVLVSCVLSGLGSSANV 338
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + + ++ MY +CGSL DA + DEM +R+V+ +W A+++G + +
Sbjct: 151 VAVSSSLVYMYARCGSLGDAVKLFDEMVERDVV------AWTAVVSGCVRNGECGKGICY 204
Query: 138 FSEM----RDRELIPDGLTVRSLLCAC 160
+M D P+ T+ S L AC
Sbjct: 205 LVQMIRLAGDSGARPNSRTMESGLEAC 231
Score = 38.5 bits (88), Expect = 0.97, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
+C++S S ++ G+ H I+ V++ N +++MYGK ++ A V + Q
Sbjct: 326 SCVLSGLGSSANVNRGKAFHAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQ 385
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR---ELIPDGLTVRSLLCACT 161
R D SW+ ++AG + + L+ +M+ R E + D ++ S + +C+
Sbjct: 386 R------DDESWSLMVAGYCKAGLDVKCLELYRQMQCRDHDEFLCDITSLVSAISSCS 437
>gi|147804811|emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]
Length = 1111
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 77/138 (55%), Gaps = 7/138 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ EAL +D + + + +T ++S CS L SL+ G KVH++I K + ++ +
Sbjct: 850 FAEALSLYDKMVLE-DLKPNSATLVXVLSACSHLASLEEGEKVHNYINGGKFEFNLSIAT 908
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG LE +R + + M +R+VI +WN +I+G +A A+ F +M
Sbjct: 909 ALIDMYAKCGQLEKSREIFNSMHERDVI------TWNVMISGYGMHGDARSAIEXFQQME 962
Query: 143 DRELIPDGLTVRSLLCAC 160
+ P+GLT ++L AC
Sbjct: 963 ESSAKPNGLTFLAVLSAC 980
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Query: 56 LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDL 115
L + L R +H +++ + +V + N +++MYGK G+L AR + +P+ D+
Sbjct: 782 LGATHLARSIHCYMIKNLMDENVSVNNSLIDMYGKSGNLTIARRIFCRIPR-------DI 834
Query: 116 ASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+WN +I+ A + EA+SL+ +M +L P+ T+ +L AC+
Sbjct: 835 VTWNTLISSYAHCGHFAEALSLYDKMVLEDLKPNSATLVXVLSACS 880
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
NFR + C +L +L GR +H ++ + V+Q+ +L+MY KCG+ E+A
Sbjct: 566 NFRTLEGGF----QACGNLGALLEGRCLHGLVVKTGMDYSQVVQSSLLSMYSKCGNPEEA 621
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
E+ +++I SW ++I+ + A E + +F EM + PDG+ + +L
Sbjct: 622 HRSFCEVLNKDII------SWTSMISAYSRMGWATECIDMFWEMLVSGIYPDGIVISCML 675
Query: 158 CACTSPSNVL 167
+ ++ V
Sbjct: 676 SSFSNSMRVF 685
Score = 36.2 bits (82), Expect = 4.2, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY ++ C+S ++ KV I +K PD V + + N+Y K G L+ A +EM
Sbjct: 228 TYNLWLTVCASQNDVETAEKVLLEIKKAKIDPDWVTYSSLTNLYIKKGLLDKAATTLNEM 287
Query: 105 PQR 107
+R
Sbjct: 288 EKR 290
Score = 35.4 bits (80), Expect = 7.6, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
+C++S+ S+ + + H I+ D ++QN +L+MY K G L+ A + +
Sbjct: 672 SCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFGRVNE 731
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+N +WN +++G + + LF EM+
Sbjct: 732 QN------FEAWNLMVSGYGKIGLIMKCIGLFREMQ 761
>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
Length = 1217
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 67/113 (59%), Gaps = 6/113 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ C +L LG+K+H +I K P+++L+N +++MY KCG L+ AR V + M R+
Sbjct: 316 VLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRD 375
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
V+ SW A+I+ +A++LFS+M+D L+PD + + L AC+
Sbjct: 376 VV------SWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACS 422
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 82/153 (53%), Gaps = 13/153 (8%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
Y E + F + + ++P T+ C++ CS ++ +G+K+H +
Sbjct: 120 GFYREGIQVFGTM---CSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTL 176
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N +++MYGKCG L +AR+V DEM +R+V+ SWN+++AG A ++A+ +
Sbjct: 177 FVGNGLVSMYGKCGFLSEARLVLDEMSRRDVV------SWNSLVAGYAQNQRFDDALEVC 230
Query: 139 SEMRDRELIPDGLTVRSLLCAC--TSPSNVLYL 169
EM ++ D T+ SLL A T+ NV+Y+
Sbjct: 231 REMESVKISHDAGTMASLLPAVSNTTTENVMYV 263
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ T L++L R VH I+S + + L ++ Y + AR V DE+P+RN
Sbjct: 49 VLDTYPDLKTL---RTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERN 105
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
VI N +I + E + +F M + PD T +L AC+ N++
Sbjct: 106 VI------IINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIV 158
>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
Length = 569
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 45/124 (36%), Positives = 71/124 (57%), Gaps = 8/124 (6%)
Query: 39 FRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
F I+P ST + + CS L +LQLGR+VH + S D +++MY KCG LED
Sbjct: 191 FGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLED 250
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
+ ++P+R+V+ +WNA+I+G A +A+ LF EM ++ + PD +T ++
Sbjct: 251 GWKLFVQVPRRDVV------TWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAV 304
Query: 157 LCAC 160
L AC
Sbjct: 305 LMAC 308
Score = 43.9 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 28/177 (15%)
Query: 2 IRNLKTQLRFTFYNSQPIQNLYNEALVAFDFLQNNTN------FRIRPS----TYACLIS 51
+RN + F+ PI++ + + F QN F I P+ T+ +IS
Sbjct: 49 VRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMIS 108
Query: 52 ---TCSSLRS-LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQR 107
C L S L+L K KS VV ++ Y K G + A + ++MP++
Sbjct: 109 GYVECGDLDSALKLFEKA-----PFKS---VVAWTAMITGYMKLGRIGLAERLFEKMPEK 160
Query: 108 NVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
N L +WNA+IAG A + + LF M + P+ T+ S L C+ S
Sbjct: 161 N------LVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELS 211
Score = 39.3 bits (90), Expect = 0.53, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+PD V N +L+ Y + ++E A+ ++MP + D SWN +I G A ++A
Sbjct: 35 EPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIK------DTPSWNTMITGFAQNQQMDKA 88
Query: 135 MSLFSEMRDRELI 147
LF M + ++
Sbjct: 89 RDLFLIMPTKNVV 101
>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 4/141 (2%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N ++EA FD ++ N + ++S C+ L +L G+ +H++I + + D L
Sbjct: 233 NRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKL 292
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
I++MY KCG LE A V +P + ++SWN +I G+A N A+ LF E
Sbjct: 293 TTAIVDMYCKCGCLEKALQVFHSLP----LPCRWISSWNCMIGGLAMHGNGEAAIQLFKE 348
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M + + PD +T +LL AC
Sbjct: 349 MERQRVAPDDITFLNLLTACA 369
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ C R +Q G ++H H+ V N +++MY +LE+AR V +
Sbjct: 127 TFPSLLIAC---RKIQHGMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTI 183
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
P PD SW ++I+G + +EA ++F M
Sbjct: 184 PH------PDSVSWTSLISGYSKWGLIDEAFTIFQLM 214
>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33680-like [Brachypodium distachyon]
Length = 734
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T L+ C+ L +L+ G+++H IL + + + MY KCG+LED VV M
Sbjct: 424 TITSLLRACAGLAALEPGKQLHTQILKFGFGLGASVGSALSTMYSKCGNLEDGMVVFRRM 483
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P R+VI +WN+II+G + N+A++LF EM+ PD +T ++LCAC+
Sbjct: 484 PHRDVI------AWNSIISGFSQNGRGNDAINLFEEMKLEGTAPDPVTFINVLCACS 534
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T +++ CS + +L G++ H ++ + V +++ +++MY KCG + DA+ ++
Sbjct: 323 TLVGVLNACSDVGTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQF 382
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ D+ W A++ G +A+ L++ M + P+ LT+ SLL AC
Sbjct: 383 SEL------DIVLWTAMVTGHVQNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAG 434
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 9/77 (11%)
Query: 68 HILSSK---SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124
H L+ K + +V + +LNMY K G + DA++V DEMP RN + SW A++AG
Sbjct: 140 HALACKLPSASSNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEV------SWAAMVAG 193
Query: 125 VASPSNANEAMSLFSEM 141
A+ + EA LF +M
Sbjct: 194 YAARKCSQEAFELFRQM 210
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++S S L +G +VH ++ V ++N ++ MY K G ++ A V + +RN
Sbjct: 226 VLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAGCMDAAFHVFESSKERN 285
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
I +W+A+I G + NA A+ +FS+M P T+ +L AC+ ++
Sbjct: 286 SI------TWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTLM 338
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 44/116 (37%), Positives = 69/116 (59%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A ++ C++L L+ G + H+ ++ S Q DV++ N ++ MY KCGS+EDAR V D M
Sbjct: 390 TFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRM 449
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
Q+ D AS +A+I G A + E++ LF +M+ L PD +T +L AC
Sbjct: 450 RQQ------DSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSAC 499
Score = 82.8 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 9/136 (6%)
Query: 29 AFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQ-PDVVLQNYIL 85
A LQ+ I P STY L+ C + +SL + +H H++ ++ + D+ L N ++
Sbjct: 48 ALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKLV 107
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
++Y K GSL +AR V DEMP +NV+ SW A+IA A + EA+ F EM+D
Sbjct: 108 SIYVKLGSLVEARRVFDEMPVKNVV------SWTAMIAAYARHEHGQEALGFFYEMQDVG 161
Query: 146 LIPDGLTVRSLLCACT 161
+ P+ T S+L ACT
Sbjct: 162 IQPNHFTFASILPACT 177
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 11/121 (9%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A F + I+P+ T+A ++ C+ L L + HD I+ + +V + N +++
Sbjct: 150 ALGFFYEMQDVGIQPNHFTFASILPACTDLEVLG---EFHDEIVKGGFESNVFVGNGLVD 206
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY K G +E AR + D+MPQR+V+ SWNA+IAG +A+ LF E+ R++
Sbjct: 207 MYAKRGCIEFARELFDKMPQRDVV------SWNAMIAGYVQNGLIEDALKLFQEIPKRDV 260
Query: 147 I 147
I
Sbjct: 261 I 261
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DV+ N ++ Y +CG +E+A + ++MP++N L SWN +IAG + EA
Sbjct: 259 DVITWNTMMAGYAQCGDVENAVELFEKMPEQN------LVSWNTMIAGYVQNGSVKEAFK 312
Query: 137 LFSEMRDRELI 147
LF M +R +I
Sbjct: 313 LFQIMPERNVI 323
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+V+ N +++ + + G +E+A + MP+ NV+ SWNA+IAG + A A+
Sbjct: 321 NVISWNAVISGFAQNGQVEEALKLFKTMPECNVV------SWNAMIAGYSQNGQAENALK 374
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTS 162
LF +M+ ++ P+ T +L AC +
Sbjct: 375 LFGQMQMVDMKPNTETFAIVLPACAA 400
Score = 43.9 bits (102), Expect = 0.026, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+ ++V N ++ Y + GS+++A + MP+RNVI SWNA+I+G A EA
Sbjct: 288 EQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVI------SWNAVISGFAQNGQVEEA 341
Query: 135 MSLFSEM 141
+ LF M
Sbjct: 342 LKLFKTM 348
>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
Length = 948
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 81/148 (54%), Gaps = 11/148 (7%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
L++EAL + Q R++P TY +I+ C+ L ++ + +HD +L D+
Sbjct: 153 GLFSEALSLYSETQR---IRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDL 209
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N +++MY + L+ AR V +EMP R+V+ SWN++I+G + NEA+ ++
Sbjct: 210 YIGNALIDMYCRFNDLDKARKVFEEMPLRDVV------SWNSLISGYNANGYWNEALEIY 263
Query: 139 SEMRDRELIPDGLTVRSLLCACTSPSNV 166
R+ ++PD T+ S+L AC +V
Sbjct: 264 YRFRNLGVVPDSYTMSSVLRACGGLGSV 291
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 9/144 (6%)
Query: 19 IQNL-YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
IQN ++EA+ F ++ T+ + TY L+S + L L LG+++H + +
Sbjct: 452 IQNGSFDEAMKLFKMMK--TDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSN 509
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+V+ N +++MY KCG + D+ V + M R++I +WN IIA + N + +
Sbjct: 510 IVVSNTLVDMYAKCGEMGDSLKVFENMKARDII------TWNTIIASCVHSEDCNLGLRM 563
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
S MR + PD T+ S+L C+
Sbjct: 564 ISRMRTEGVTPDMATMLSILPVCS 587
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 14/141 (9%)
Query: 23 YNEAL-VAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
+NEAL + + F N + P +Y + ++ C L S++ G +H I + DV+
Sbjct: 256 WNEALEIYYRF----RNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVI 311
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ N +L+MY K L D R + D+M R D SWN +I G + E++ LF
Sbjct: 312 VNNGLLSMYCKFNGLIDGRRIFDKMVLR------DAVSWNTMICGYSQVGLYEESIKLFM 365
Query: 140 EMRDRELIPDGLTVRSLLCAC 160
EM + + PD LT+ S+L AC
Sbjct: 366 EMVN-QFKPDLLTITSILQAC 385
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 9/141 (6%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
LY E++ F + N F+ T ++ C L L+ G+ VHD++++S + D
Sbjct: 355 GLYEESIKLFMEMVNQ--FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTA 412
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N ++NMY KCG+L ++ V M + D SWN++I + +EAM LF
Sbjct: 413 SNILINMYAKCGNLLASQEVFSGM------KCKDSVSWNSMINVYIQNGSFDEAMKLFKM 466
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M+ ++ PD +T LL T
Sbjct: 467 MK-TDVKPDSVTYVMLLSMST 486
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T ++ CS L + + G+++H I + DV + N ++ MY KCGSL ++ V
Sbjct: 577 ATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKL 636
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
M ++V+ +W A+I+ +A+ F EM ++PD + +++ AC+
Sbjct: 637 MKTKDVV------TWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHS 690
Query: 164 SNV 166
V
Sbjct: 691 GLV 693
>gi|297819530|ref|XP_002877648.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323486|gb|EFH53907.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 786
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 67/113 (59%), Gaps = 6/113 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ C +L LG+K+H +I K P+++L+N +++MY KCG L+ AR V + M R+
Sbjct: 220 VLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRD 279
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
V+ SW A+I+ +A++LFS+M+D L+PD + + L AC+
Sbjct: 280 VV------SWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACS 326
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 76/134 (56%), Gaps = 10/134 (7%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
++P T+ C++ CS ++ +G+K+H + + N +++MYGKCG L +A
Sbjct: 40 HVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEA 99
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R+V DEM +R+V+ SWN+++AG A ++A+ + EM ++ D T+ SLL
Sbjct: 100 RLVLDEMSRRDVV------SWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLL 153
Query: 158 CAC--TSPSNVLYL 169
A T+ NV+Y+
Sbjct: 154 PAVSNTTTENVMYV 167
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 78/150 (52%), Gaps = 11/150 (7%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHI----LSSKSQP 76
+LY EALV F+ + N T+ ++ C+SL +L LG+ VH +I + +
Sbjct: 339 SLYEEALVLFEVMLRE-NVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVN 397
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+V L I+ MY KCG +E A V M R+ LASWNA+I+G+A +A A+
Sbjct: 398 NVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRS------LASWNAMISGLAMNGHAERALG 451
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
LF EM + PD +T +L ACT V
Sbjct: 452 LFEEMINEGFQPDDITFVGVLSACTQAGFV 481
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 7/140 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ EAL F +Q + ST ++S C LRSL+LG+ + + ++ L N
Sbjct: 240 FEEALACFTRMQE-ADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVN 298
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG + AR + D M ++VI WN +I G S EA+ LF M
Sbjct: 299 ALVDMYSKCGEIGTARKLFDGMEDKDVI------LWNTMIGGYCHLSLYEEALVLFEVML 352
Query: 143 DRELIPDGLTVRSLLCACTS 162
+ P+ +T ++L AC S
Sbjct: 353 RENVTPNDVTFLAVLPACAS 372
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 39 FRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ P + LI S + L+ R V D + D V ++ Y G ++DAR
Sbjct: 158 LHLHPHVHTSLIHMYSQVGELRHARLVFD----KSTLRDAVSFTALITGYVSEGHVDDAR 213
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+ DE+P ++V+ SWNA+IAG EA++ F+ M++ ++ P+ T+ S+L
Sbjct: 214 RLFDEIPAKDVV------SWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLS 267
Query: 159 AC 160
AC
Sbjct: 268 AC 269
>gi|302798571|ref|XP_002981045.1| hypothetical protein SELMODRAFT_334 [Selaginella moellendorffii]
gi|300151099|gb|EFJ17746.1| hypothetical protein SELMODRAFT_334 [Selaginella moellendorffii]
Length = 833
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 43/118 (36%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
YA L+ C +L+ GR+VH H+ + N ++NMY +C SL++AR V D M
Sbjct: 1 YARLMRACGISGALEQGRRVHGHVQRHADDRSLFFGNRLVNMYRRCSSLDEARKVFDRMR 60
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
+R+V+ SW A+I+ A + +A+ LF+EM L P+ +T +LL AC SP
Sbjct: 61 ERDVV------SWTAMISAYAQTGHQRQALDLFTEMAGSSLDPNRVTFLALLEACDSP 112
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 7/120 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C RSL GR +H +L + DVVL ++ MYG+CG LE AR + M
Sbjct: 203 TFVSALNACIGSRSLSNGRLIHALVLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRM 262
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCACTSP 163
P+RNV+ SWNA++A ++ EA+ LF M ++ P ++ ++L A T+P
Sbjct: 263 PERNVV------SWNAMVASCTLNAHFAEAIELFKRMVAVAMVEPTRVSFITVLNAVTTP 316
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQ--PDVVLQNYILNMYGKCGSLEDARVVSD 102
T+ L+S C S L+ G +H +++ + D ++ I+NMYGKCG L+ AR + +
Sbjct: 515 TFMSLLSVCDSRAFLRQGETIHRRVINQTPELSSDPIVAAAIVNMYGKCGELDTARHLFE 574
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ RN LASWN++I+ A A +A L MR ++PD +T +LL AC +
Sbjct: 575 DTSHRN------LASWNSMISAYALHGRAEQAFDLSERMRREGVLPDRVTFITLLNACVA 628
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 8/142 (5%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
L+ A AFD + + P T+ L++ C + +++ G+ +H I+ S + D V
Sbjct: 593 LHGRAEQAFDLSERMRREGVLPDRVTFITLLNACVAGGAVRHGKMIHARIIDSGLEKDTV 652
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ N ++N Y KCG+L+ A + + R+V+ SWN IIAG A +A EA+
Sbjct: 653 VANALVNFYSKCGNLDTATSLFGALDYRDVV------SWNGIIAGFAHNGHAREALKSMW 706
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
M+ + PD +T ++L A +
Sbjct: 707 LMQQDGVRPDAITFLTILSASS 728
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++ +++ ++ +L GR++H I + + + N ++ MYG+CG + DA V M
Sbjct: 305 SFITVLNAVTTPEALAEGRRIHAMIQERQLLSQIEVANALVTMYGRCGGVGDAERVFSAM 364
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+R DL SWNA+I+ A A E ++LF MR + PD +T L AC
Sbjct: 365 ERR------DLVSWNAMISAYAQSGLAREVVNLFHRMRAERVPPDRITFLMALDAC 414
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYIL 85
A D + P+ T+ L+ C S L+ G+++H + + + + DV + N ++
Sbjct: 83 ALDLFTEMAGSSLDPNRVTFLALLEACDSPEFLEDGKQIHARVSALQLLESDVPVANAVM 142
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
MY KC + A V EM +R DL SWN IA A + ++L M+
Sbjct: 143 GMYRKCERADLAMAVFSEMRER------DLISWNNAIAANAESGDYTFTLALLKSMQLEG 196
Query: 146 LIPDGLTVRSLLCAC 160
+ PD +T S L AC
Sbjct: 197 MAPDKVTFVSALNAC 211
Score = 42.0 bits (97), Expect = 0.083, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 16/133 (12%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS---- 93
R+ P T+ + C+ +R L GR VH + S + + N +++Y C S
Sbjct: 399 RVPPDRITFLMALDACAEIRDLDSGRTVHHLSVESGFGSCISVANATMHLYSSCSSSSSS 458
Query: 94 ----LEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD 149
+E + + M R+VI SWN +I G ++ A+S+F M + +
Sbjct: 459 SSSLMEVVAGIFESMAARDVI------SWNTMITGYVQAGDSFSALSIFKRMLLEGIRGN 512
Query: 150 GLTVRSLLCACTS 162
+T SLL C S
Sbjct: 513 QVTFMSLLSVCDS 525
>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 72/122 (59%), Gaps = 8/122 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ PS T+ +I +C+ L +L+ GR +H H+L + DV +Q +++ YGKCG L +AR
Sbjct: 107 VAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNAR 166
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V D+M R+V+ +WN++I+G A EA+ LF M++ + P+ T S+L
Sbjct: 167 KVFDKMRDRSVV------TWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLS 220
Query: 159 AC 160
AC
Sbjct: 221 AC 222
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 77/136 (56%), Gaps = 7/136 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EA+ FD ++ +T+ ++S C+ L + LG VH++ + + +VVL +
Sbjct: 195 EAIRLFDRMKE-IGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSL 253
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+NMY +CG++ AR V D M +RNV+ +W A+I+G + ++A+ LF EMR
Sbjct: 254 INMYTRCGNVSKAREVFDSMKERNVV------AWTAMISGYGTNGYGSQAVELFHEMRRN 307
Query: 145 ELIPDGLTVRSLLCAC 160
L+P+ +T ++L AC
Sbjct: 308 GLLPNSITFVAVLSAC 323
>gi|15237290|ref|NP_200097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171558|sp|Q9FLX6.1|PP430_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g52850, chloroplastic; Flags: Precursor
gi|10177099|dbj|BAB10433.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332008885|gb|AED96268.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 893
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
IS ++L +L+ G+ +H + + S + N +++MY KCGSLEDA+ V +E
Sbjct: 534 FISASANLGALETGKHLHCYSVKSGFSGAASVLNSLVDMYSKCGSLEDAKKVFEE----- 588
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I +PD+ SWN +++G+AS + A+S F EMR +E PD +T LL AC+
Sbjct: 589 -IATPDVVSWNGLVSGLASNGFISSALSAFEEMRMKETEPDSVTFLILLSACS 640
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 9/124 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS--LEDARVVSD 102
TY+ ++S CS++RSL G+++H + + + N +++MY KC + +E +RV
Sbjct: 327 TYSAILSLCSAVRSLDFGKQIHSQTIKVGFEDSTDVGNALVDMYMKCSASEVEASRVF-- 384
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ SP++ SW +I G+ + L EM RE+ P+ +T+ +L AC+
Sbjct: 385 -----GAMVSPNVVSWTTLILGLVDHGFVQDCFGLLMEMVKREVEPNVVTLSGVLRACSK 439
Query: 163 PSNV 166
+V
Sbjct: 440 LRHV 443
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ ++ +C+ LR + G +VH ++ + + + V+ + + ++Y KCG ++A
Sbjct: 126 TFSSVVRSCAGLRDISYGGRVHGSVIKTGFEGNSVVGSSLSDLYSKCGQFKEA------C 179
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ +++ D SW +I+ + EA+ +SEM + P+ T LL A
Sbjct: 180 ELFSSLQNADTISWTMMISSLVGARKWREALQFYSEMVKAGVPPNEFTFVKLLGA 234
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 54 SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA-RVVSDEMPQRNVIES 112
SS L+ G+ +H +I+ +VVL+ +++ Y + +EDA RV++ Q
Sbjct: 235 SSFLGLEFGKTIHSNIIVRGIPLNVVLKTSLVDFYSQFSKMEDAVRVLNSSGEQ------ 288
Query: 113 PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
D+ W ++++G A EA+ F EMR L P+ T ++L C++
Sbjct: 289 -DVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLQPNNFTYSAILSLCSA 337
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++S C S S ++G +H ++ ++ L N +L++Y K + +AR + DEM R
Sbjct: 30 ILSFCES-NSSRIGLHIHCPVIKFGLLENLDLCNNLLSLYLKTDGIWNARKLFDEMSHRT 88
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
V +W +I+ A+SLF EM P+ T S++ +C ++ Y
Sbjct: 89 VF------AWTVMISAFTKSQEFASALSLFEEMMASGTHPNEFTFSSVVRSCAGLRDISY 142
>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Vitis vinifera]
Length = 889
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 81/148 (54%), Gaps = 11/148 (7%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
L++EAL + Q R++P TY +I+ C+ L ++ + +HD +L D+
Sbjct: 94 GLFSEALSLYSETQR---IRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDL 150
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N +++MY + L+ AR V +EMP R+V+ SWN++I+G + NEA+ ++
Sbjct: 151 YIGNALIDMYCRFNDLDKARKVFEEMPLRDVV------SWNSLISGYNANGYWNEALEIY 204
Query: 139 SEMRDRELIPDGLTVRSLLCACTSPSNV 166
R+ ++PD T+ S+L AC +V
Sbjct: 205 YRFRNLGVVPDSYTMSSVLRACGGLGSV 232
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 9/144 (6%)
Query: 19 IQNL-YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
IQN ++EA+ F ++ T+ + TY L+S + L L LG+++H + +
Sbjct: 393 IQNGSFDEAMKLFKMMK--TDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSN 450
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+V+ N +++MY KCG + D+ V + M R++I +WN IIA + N + +
Sbjct: 451 IVVSNTLVDMYAKCGEMGDSLKVFENMKARDII------TWNTIIASCVHSEDCNLGLRM 504
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
S MR + PD T+ S+L C+
Sbjct: 505 ISRMRTEGVTPDMATMLSILPVCS 528
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 14/141 (9%)
Query: 23 YNEAL-VAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
+NEAL + + F N + P +Y + ++ C L S++ G +H I + DV+
Sbjct: 197 WNEALEIYYRF----RNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVI 252
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ N +L+MY K L D R + D+M R D SWN +I G + E++ LF
Sbjct: 253 VNNGLLSMYCKFNGLIDGRRIFDKMVLR------DAVSWNTMICGYSQVGLYEESIKLFM 306
Query: 140 EMRDRELIPDGLTVRSLLCAC 160
EM + + PD LT+ S+L AC
Sbjct: 307 EMVN-QFKPDLLTITSILQAC 326
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 9/141 (6%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
LY E++ F + N F+ T ++ C L L+ G+ VHD++++S + D
Sbjct: 296 GLYEESIKLFMEMVNQ--FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTA 353
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N ++NMY KCG+L ++ V M + D SWN++I + +EAM LF
Sbjct: 354 SNILINMYAKCGNLLASQEVFSGM------KCKDSVSWNSMINVYIQNGSFDEAMKLFKM 407
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M+ ++ PD +T LL T
Sbjct: 408 MK-TDVKPDSVTYVMLLSMST 427
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T ++ CS L + + G+++H I + DV + N ++ MY KCGSL ++ V
Sbjct: 518 ATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKL 577
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
M ++V+ +W A+I+ +A+ F EM ++PD + +++ AC+
Sbjct: 578 MKTKDVV------TWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHS 631
Query: 164 SNV 166
V
Sbjct: 632 GLV 634
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 79/140 (56%), Gaps = 11/140 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y EAL F +Q RP + + +++ CS++ ++ GR VH ++ + + D VL
Sbjct: 275 YKEALEIFQQMQRE---ETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVL 331
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+L+MY KCG L+ V +EM +R + +WNA+I G+A A +A+ LFS+
Sbjct: 332 GTALLDMYAKCGRLDMGWEVFEEMKEREIF------TWNAMIGGLAIHGRAEDALELFSK 385
Query: 141 MRDRELIPDGLTVRSLLCAC 160
+++ + P+G+T+ +L AC
Sbjct: 386 LQEGRMKPNGITLVGVLTAC 405
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 49/177 (27%)
Query: 14 YNSQPIQNLYNEALVAFDFLQNNTNFRI-----------RPS--TYACLISTCSSLRSLQ 60
++S P N++ +V L+NN F+ RP+ TY L CS +++Q
Sbjct: 90 FSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDARPNKFTYPTLFKACSVAQAVQ 149
Query: 61 LGRKVHDHILSS------------------------------KSQPDVVLQNYILNMYGK 90
GR++H H++ + DVV N +++ Y K
Sbjct: 150 EGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLK 209
Query: 91 CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
CG LE A+ + +MP +N+ SWN +I G+A N +A LF EM +R+ I
Sbjct: 210 CGVLEAAKGLFAQMPVKNI------GSWNVMINGLAKGGNLGDARKLFDEMSERDEI 260
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 79/140 (56%), Gaps = 11/140 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y EAL F +Q RP + + +++ CS++ ++ GR VH ++ + + D VL
Sbjct: 275 YKEALEIFQQMQRE---ETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVL 331
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+L+MY KCG L+ V +EM +R + +WNA+I G+A A +A+ LFS+
Sbjct: 332 GTALLDMYAKCGRLDMGWEVFEEMKEREIF------TWNAMIGGLAIHGRAEDALELFSK 385
Query: 141 MRDRELIPDGLTVRSLLCAC 160
+++ + P+G+T+ +L AC
Sbjct: 386 LQEGRMKPNGITLVGVLTAC 405
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 49/177 (27%)
Query: 14 YNSQPIQNLYNEALVAFDFLQNNTNFRI-----------RPS--TYACLISTCSSLRSLQ 60
++S P N++ +V L+NN F+ RP+ TY L CS +++Q
Sbjct: 90 FSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDARPNKFTYPTLFKACSVAQAVQ 149
Query: 61 LGRKVHDHILSS------------------------------KSQPDVVLQNYILNMYGK 90
GR++H H++ + DVV N +++ Y K
Sbjct: 150 EGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLK 209
Query: 91 CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
CG LE A+ + +MP +N+ SWN +I G+A N +A LF EM +R+ I
Sbjct: 210 CGVLEAAKGLFAQMPVKNI------GSWNVMINGLAKGGNLGDARKLFDEMSERDEI 260
>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 78/148 (52%), Gaps = 7/148 (4%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
L+ +A+ F L + T + T C+I C+ L L LG+ +H DV +
Sbjct: 187 LFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVG 246
Query: 82 NYILNMYGKCGSLEDA-RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N ++ MYGKCG +E+A + V D M + V +SWNA++ G A S+ +A+ L+ +
Sbjct: 247 NALIAMYGKCGLVEEAVKRVFDLMDTKTV------SSWNALLCGYAQNSDPRKALDLYLQ 300
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNVLY 168
M D L PD T+ SLL AC+ ++ Y
Sbjct: 301 MTDSGLDPDWFTIGSLLLACSRMKSLHY 328
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Query: 41 IRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I+P A C+ CS L +L+LG+++H L + D+ + + I++MY K G + ++
Sbjct: 407 IQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQ 466
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+ D + ++ D+ASWN IIAG EA+ LF +M L PD T +L
Sbjct: 467 RIFDRLREK------DVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILM 520
Query: 159 ACTSPSNV 166
AC+ V
Sbjct: 521 ACSHAGLV 528
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 15/142 (10%)
Query: 29 AFDFLQNNTNFRI-----RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQ--PDVVLQ 81
A DFLQ ++ + R L+ C + +++GR++H+ ++S+ +Q D VL
Sbjct: 86 ALDFLQRESDDVVLDSAQRSEAMGVLLQACGQRKDIEVGRRLHE-MVSASTQFCNDFVLN 144
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
I+ MY CGS D+R+V D++ ++N+ + WNAI++ +AMS+FSE+
Sbjct: 145 TRIITMYSMCGSPSDSRMVFDKLRRKNLFQ------WNAIVSAYTRNELFEDAMSIFSEL 198
Query: 142 RD-RELIPDGLTVRSLLCACTS 162
E PD T+ ++ AC
Sbjct: 199 ISVTEHKPDNFTLPCVIKACAG 220
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 15/142 (10%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A D T+ + P T L+ CS ++SL G ++H L + D + +L+
Sbjct: 294 ALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLS 353
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
+Y CG A+V+ D M R+ L SWN +IAG + +EA++LF R++
Sbjct: 354 LYICCGKPFAAQVLFDGMEHRS------LVSWNVMIAGYSQNGLPDEAINLF-----RQM 402
Query: 147 IPDGLTVR--SLLCACTSPSNV 166
+ DG+ +++C C + S +
Sbjct: 403 LSDGIQPYEIAIMCVCGACSQL 424
>gi|8920616|gb|AAF81338.1|AC007767_18 Contains similarity to a hypothetical protein F19I3.26 gi|7485810
from Arabidopsis thaliana BAC F19I3 gb|AC004238. It
contains a PPR repeat domain PF|01535. ESTs gb|AV539170,
gb|AV551571, gb|AA597781, gb|AV544524, gb|AV531577 and
gb|AV533492 come from this gene [Arabidopsis thaliana]
Length = 864
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 90/161 (55%), Gaps = 14/161 (8%)
Query: 6 KTQLRFTFYNSQPIQN-LYNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLG 62
K + +T S +QN L+ EA L + ++P STY+ L+S+ + +L G
Sbjct: 532 KDGVTWTVMISGLVQNELFAEAA---SLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQG 588
Query: 63 RKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNA 120
+ +H I + + PD++LQN +++MY KCG++EDA + +M Q+ D SWN+
Sbjct: 589 KHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQK------DTVSWNS 642
Query: 121 IIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+I G++ A++A++LF EM D P+ +T +L AC+
Sbjct: 643 MIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSACS 683
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 56 LRSLQLGRKVH-----DHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI 110
LR L G VH D I S VV +L+ Y K G L++ARV+ + MP+RN++
Sbjct: 153 LRRLSEGGLVHARHLLDKIPQRGSINRVVYWTSLLSKYAKTGYLDEARVLFEVMPERNIV 212
Query: 111 ESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
NA++ G NEA +LF EM
Sbjct: 213 TC------NAMLTGYVKCRRMNEAWTLFREM 237
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+ S+ +VV ++ Y + G + +A + EMP+RN++ SW A+I+G A
Sbjct: 325 LFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIV------SWTAMISGFAWN 378
Query: 129 SNANEAMSLFSEM-RDRELI-PDGLTVRSLLCAC 160
EA+ LF EM +D + + P+G T+ SL AC
Sbjct: 379 ELYREALMLFLEMKKDVDAVSPNGETLISLAYAC 412
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+ +VV N ++ + G +E A+ V D MP R+V+ SWNA+I G EA
Sbjct: 269 ERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVV------SWNAMIKGYIENDGMEEA 322
Query: 135 MSLFSEMRDRELI 147
LF +M ++ ++
Sbjct: 323 KLLFGDMSEKNVV 335
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 44/118 (37%), Positives = 68/118 (57%), Gaps = 7/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC-GSLEDARVVSDE 103
TY ++ C+ L L LG+ VH ++ D+ +QN +++MY C G + AR V DE
Sbjct: 134 TYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDE 193
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
MP+ D +W+A+I G A + EA++LF EM+ E+ PD +T+ S+L ACT
Sbjct: 194 MPKS------DSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACT 245
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S C+ L +L+LG+ + +I + V + N +++M+ KCG + A + M
Sbjct: 236 TMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAM 295
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++ ++ SW ++I G+A EA LF EM + PD + LL AC+
Sbjct: 296 NEKTIV------SWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACS 346
>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 592
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 79/147 (53%), Gaps = 6/147 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
QN + + V FL + + ST+ L+S C+ + ++ LG VH++I + +VV
Sbjct: 196 QNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVV 255
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
L ++NMY +CG++ AR V D M ++N++ +W A+I+G + ++A+ LF+
Sbjct: 256 LGTALMNMYSRCGNVSKAREVFDSMEEKNIV------AWTAMISGYGMHGHGSQAIELFN 309
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNV 166
EM P+ +T ++L AC V
Sbjct: 310 EMSFDGPRPNNVTFVAVLSACAHAGLV 336
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ +I + + L + +G +H H+ D +Q +++ Y K G + AR V D+M
Sbjct: 120 TFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKM 179
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P++ V+ +WN++I+G EA+ LF M+D + PD T SLL AC
Sbjct: 180 PEKTVV------AWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACA 230
>gi|302773754|ref|XP_002970294.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
gi|300161810|gb|EFJ28424.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
Length = 1096
Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
++P+ YA L+ C+ +S G+ VH HILSS + LQN+++ MY KCG L+DA V
Sbjct: 24 LQPARYASLLQKCAEQKSAAAGKLVHQHILSSGCGVNRYLQNHLIFMYAKCGCLQDAVEV 83
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ +P P++ SW A+I A + E + F +M+ PD ++L AC
Sbjct: 84 FELLP------CPNVFSWTALITAYAKEGHLREVLGFFRKMQLDGTKPDAFVFSTVLTAC 137
Query: 161 TS 162
+S
Sbjct: 138 SS 139
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 78/138 (56%), Gaps = 3/138 (2%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
+A+ F + + + R +T+ ++ CS+L L G+ H+ I+ + + + N +
Sbjct: 210 DAMQVFQLMDLDGSVRPNDATFVSVVDACSNLLDLPRGKSTHERIIRTGFDSYLFVGNSL 269
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+NMYGKCGS++ AR+V ++M R+V+ + SW IIA A + EA LF +M
Sbjct: 270 VNMYGKCGSVDHARLVFEKMRLRDVLS---VYSWTVIIAAFAHNGHLLEAFVLFYKMDLE 326
Query: 145 ELIPDGLTVRSLLCACTS 162
++P+ +T ++L ACT+
Sbjct: 327 GVLPNKVTFVTVLRACTT 344
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 48/129 (37%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
R TY + CSSL+ L GR++H IL + L N ++NMYGKCGSL++A
Sbjct: 622 RANSVTYLASLEACSSLKDLTRGRQLHARILLENIH-EANLSNAVINMYGKCGSLDEAMD 680
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+MP+R+VI SWN +IA A + +A+ F +M PD T + A
Sbjct: 681 EFVKMPERDVI------SWNTMIATYAQHGSGRQALEFFKQMDLEGWTPDRATYLGAIDA 734
Query: 160 CTS-PSNVL 167
C S PS L
Sbjct: 735 CGSVPSLAL 743
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 11/125 (8%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
++ +++ CSS +L G+ +HD ++ + + VV N I+N+YGKCG + +A+ V + +P
Sbjct: 130 FSTVLTACSSAGALNEGKAIHDCVVLAGMETQVV-GNAIVNLYGKCGRVHEAKAVFERLP 188
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR-DRELIPDGLTVRSLLCACTSPS 164
+RN L SWNA+IA A + +AM +F M D + P+ T S++ AC S
Sbjct: 189 ERN------LVSWNALIAANAQNGHCKDAMQVFQLMDLDGSVRPNDATFVSVVDAC---S 239
Query: 165 NVLYL 169
N+L L
Sbjct: 240 NLLDL 244
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 8/120 (6%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLEDARVVS 101
+TY I C S+ SL LG+ +H + ++ + D + ++ MY +CGSL DA+ V
Sbjct: 726 ATYLGAIDACGSVPSLALGKTIHSIVATAAPCLEQDPGVATALVTMYARCGSLHDAKSVF 785
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
RN L +W+ +IA A NEA+ LF EM+ + PD LT +L+ AC+
Sbjct: 786 WRSHSRN------LVTWSNLIAACAQHGRENEALDLFREMQLQGTKPDALTFSTLVAACS 839
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 66/120 (55%), Gaps = 6/120 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ +C L ++H H+++S + DVVLQ ++ MYGKCGS++ A + + +
Sbjct: 430 TFMAVMDSCLRPEDLPRAEQIHAHMVASGFESDVVLQVCLVTMYGKCGSVDSAWSIFENL 489
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+R+V+ +WN++++ AS ++ L+ M PD +T ++L AC S S
Sbjct: 490 KERSVV------AWNSMLSAFASNGCYERSLKLYERMLLEGTKPDKITYLAVLDACQSVS 543
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 11/118 (9%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY ++ C S+ + + + + + D+ +N ++ Y +CGSL++A+ D +
Sbjct: 531 TYLAVLDACQSVS------EARRYAATFELELDIAARNAAVSAYARCGSLKEAKAAFDAI 584
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+N + +WNA+I+G+A + +A+ F +M + + +T + L AC+S
Sbjct: 585 QWKN-----NAVTWNAMISGLAQHGESKQALECFWKMELEGVRANSVTYLASLEACSS 637
>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
Length = 935
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 4/141 (2%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
L EA F ++ + T+ ++ +S S+ GR++H ++S+ + D V
Sbjct: 539 HGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTV 598
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+QN +LNMY KCGSL+DA+ + D ++ D+ +W ++IAG A A A+ LF
Sbjct: 599 IQNALLNMYAKCGSLDDAQAIFD----KSSSNQEDVIAWTSLIAGYAQYGQAERALKLFW 654
Query: 140 EMRDRELIPDGLTVRSLLCAC 160
M+ + + P+ +T S L AC
Sbjct: 655 TMQQQGVRPNHVTFISALTAC 675
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 80/140 (57%), Gaps = 12/140 (8%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
++A+ FD ++ +RP+ +A L++ CS L +L GR++H I + + VL
Sbjct: 126 DKAMELFDRME------VRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLG 179
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N +++MY KCGSL DA+ D +P+ + D+ +WNA+I+ +A EA+ LF +M
Sbjct: 180 NALISMYSKCGSLIDAKQAFDRLPRAS---KRDVVTWNAMISAFLRNGSAREALQLFRDM 236
Query: 142 -RDRELIPDGLTVRSLLCAC 160
RD P+ +T S+L +C
Sbjct: 237 DRDGAPPPNSVTFVSVLDSC 256
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 77/151 (50%), Gaps = 19/151 (12%)
Query: 25 EALVAFD--FLQNNTNFRIRPS--TYACLISTCSSL---RSLQLGRKVHDHILSSKSQPD 77
EALV F+ L+ +RPS T+ ++ C++ + +G+++ + + + D
Sbjct: 438 EALVLFERMLLEG-----VRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGD 492
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEM-PQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+ N LNMY KCGSL DAR V + + P R D +WN+++A EA
Sbjct: 493 TAVANATLNMYAKCGSLADARAVFERISPARR-----DCITWNSMLAAYGHHGLGKEAFE 547
Query: 137 LFSEMRDRELI-PDGLTVRSLLCACTSPSNV 166
LF M +L+ P+ +T ++L A TS +++
Sbjct: 548 LFQAMEAEKLVKPNKVTFVAVLDASTSRTSI 578
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 21/130 (16%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY------ILNMYGKCGSLED 96
PSTY CL+ C LR+L+ G+++H HILS + + L N+ ++ M+ KCG+L +
Sbjct: 43 PSTYGCLLQACGRLRALKQGQRLHAHILSRR----IDLHNHSFLASDLIVMHAKCGNLAE 98
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
A ++D + S A+I ++AM LF M E+ P+ + +L
Sbjct: 99 AEALADRFAS--------VYSCTAMIRAWMEHGRPDKAMELFDRM---EVRPNCHALIAL 147
Query: 157 LCACTSPSNV 166
+ AC+ N+
Sbjct: 148 VNACSCLGNL 157
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 45 TYACLISTC--SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV-- 100
T+ ++ +C + L SL+ R +H I+ + + + ++ +++ YGK GSL+DA V
Sbjct: 248 TFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFL 307
Query: 101 --SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
DE P S L + +A+I+ E++ LF M P G+T+ S+L
Sbjct: 308 RKGDEEP------STSLVTCSAMISACWQNGWPQESLRLFFAMNLEGTKPSGVTLVSVLN 361
Query: 159 ACT 161
AC+
Sbjct: 362 ACS 364
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D VL +L Y + L AR D I+SPD+ SWNA+ A + EA+
Sbjct: 388 DNVLGTTLLTTYARSNDLPRARATFD------AIQSPDVVSWNAMAAAYLQHHRSREALV 441
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTS 162
LF M + P T + L AC +
Sbjct: 442 LFERMLLEGVRPSVATFITALTACAA 467
>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 903
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TYA ++ TC++L S LG+++H ++ + Q DV + + +++MY KCG L D+R++ ++
Sbjct: 605 TYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKS 664
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+R D +WNA+I G A EA+ LF M + P+ +T S+L AC
Sbjct: 665 LRR------DFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACA 715
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 52 TCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIE 111
C+ ++ L G +++ + S DV + N ++MYGKC +L +A V DEM +R
Sbjct: 391 ACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRR---- 446
Query: 112 SPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
D SWNAIIA E + LF M + PD T S+L ACT S
Sbjct: 447 --DAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTGGS 497
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 75/141 (53%), Gaps = 7/141 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
NL + AL F +Q N + S YA ++ +C++L L+LG ++H H L S D ++
Sbjct: 260 NLLSLALKFFKEMQK-VNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIV 318
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ L+MY KC +++DA+++ D E+ + S+NA+I G + + +A+ LF
Sbjct: 319 RTATLDMYAKCDNMQDAQILFDNS------ENLNRQSYNAMITGYSQEEHGFKALLLFHR 372
Query: 141 MRDRELIPDGLTVRSLLCACT 161
+ L D +++ + AC
Sbjct: 373 LMSSGLGFDEISLSGVFRACA 393
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
RI P T+ ++ C+ SL G ++H I+ S + + +++MY KCG +E+A
Sbjct: 478 RIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEA 536
Query: 98 RVVSDEMPQR-NVIESPD-------------LASWNAIIAGVASPSNANEAMSLFSEMRD 143
+ QR NV + + SWN+II+G + +A LF+ M +
Sbjct: 537 EKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMME 596
Query: 144 RELIPDGLTVRSLLCACT 161
+ PD T ++L C
Sbjct: 597 MGITPDKFTYATVLDTCA 614
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 20/145 (13%)
Query: 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFR--------------IRPSTYACLISTCSSLR 57
+F+N P++++ + + +LQN + + T+A ++ CS L
Sbjct: 135 SFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLE 194
Query: 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
LG ++H ++ DVV + +L+MY K ++ V +P++N + S
Sbjct: 195 DTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSV------S 248
Query: 118 WNAIIAGVASPSNANEAMSLFSEMR 142
W+AIIAG + + A+ F EM+
Sbjct: 249 WSAIIAGCVQNNLLSLALKFFKEMQ 273
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Query: 31 DFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90
DFL N N + + ++ + C+ +L+LG++ H H++ S +P + N +L +Y
Sbjct: 38 DFL-NQVN-SVSTTNFSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTN 95
Query: 91 CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
A +V D+MP R+V+ SWN +I G + ++ +A S F+ M R+++
Sbjct: 96 SRDFVSASMVFDKMPLRDVV------SWNKMINGYSKSNDMFKANSFFNMMPVRDVV 146
>gi|255572205|ref|XP_002527042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533604|gb|EEF35342.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 520
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 86/146 (58%), Gaps = 11/146 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y +AL +D ++ + ++P T++ ++S CS L +L+ G+++H+ I + + + ++
Sbjct: 314 YVKALDMYDEMKIAS---VKPDAVTFSSILSACSQLAALEKGKEIHNCITKNDLETNEIV 370
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+L+MY KCG++++A V +++P+R DL SW +II+ S A EA+ LF E
Sbjct: 371 MGALLDMYAKCGAVDEALSVFNKLPER------DLLSWTSIISAYGSHGQALEALRLFEE 424
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
++ + PD +T ++L AC+ V
Sbjct: 425 LQQSKASPDAVTFLAVLSACSHAGLV 450
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+Y EAL FD L + TY ++ C L GR +H H++ S D+V+
Sbjct: 9 MYTEALELFDRLLQYPYLQPDSFTYPSVLKACGGLGRYDYGRMIHTHLIKSGFVFDIVVA 68
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+ +++++ KC A + DEMP+R D+A WN +I+ A +A+ +F +M
Sbjct: 69 SSLVSLHAKCNLFGYAIQLFDEMPER------DVACWNTVISCYYQDGKAEKALEMFGKM 122
Query: 142 RDRELIPDGLTVRSLLCACT 161
RD P+ +T+ +++ +C
Sbjct: 123 RDSGFEPNSVTLTTVISSCA 142
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 36 NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
++ F T +IS+C+ L L+ G+++H ++ + D + + +++MYGK G L+
Sbjct: 124 DSGFEPNSVTLTTVISSCARLLDLERGKEIHREVMQNGMVLDGFVGSALVDMYGKFGCLD 183
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
A+ + ++MP++ L +WN++IAG +S +++ E + LF M P T+ S
Sbjct: 184 LAKDIFEQMPKKT------LVAWNSLIAGYSSAADSKECIELFWRMNMEGTKPTVTTLSS 237
Query: 156 LLCACTSPSNV 166
+L AC+ +++
Sbjct: 238 ILLACSRAAHL 248
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T + ++ CS LQ GR +H + + ++ Q D+ + + ++ +Y KCG ++ A +
Sbjct: 233 TTLSSILLACSRAAHLQHGRFIHGYAVRNRVQLDIFVSSGLIELYFKCGKVQSAENIFYM 292
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+P+ NV+ WN +I+G + + +A+ ++ EM+ + PD +T S+L AC+
Sbjct: 293 LPKANVV------LWNVMISGYVTIGDYVKALDMYDEMKIASVKPDAVTFSSILSACS 344
>gi|147801111|emb|CAN75464.1| hypothetical protein VITISV_006518 [Vitis vinifera]
Length = 504
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
NFR ST+A +I CS L ++G++V ++ D+ + + +++MY KCG +EDA
Sbjct: 277 NFRPTMSTFASVIGACSVLTVXEIGQQVQSQLVKMBFYNDIKMGSALIDMYSKCGRIEDA 336
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
R V D MP++NV SW ++I G N+NEA+ LFS M+
Sbjct: 337 RRVFDHMPEKNVF------SWTSMIDGYGKNGNSNEALELFSRMQ 375
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 62 GRKVHDHILSSKSQP--DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
G+K+H HIL +P +V ++ IL++ +C L AR + DEM Q P L+++N
Sbjct: 61 GQKIHSHILKIGFEPNTNVSIKLLILHLKSRC--LRYARQLFDEMHQ------PTLSAYN 112
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
+I+G E ++L S + PDG T +L A S ++
Sbjct: 113 YMISGYLKHGQIEELLNLVSRLTFSYEKPDGFTFSMILKATGCASGGIF 161
>gi|302809659|ref|XP_002986522.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
gi|300145705|gb|EFJ12379.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
Length = 625
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TYA ++ CS++ L+LG++VH + S+ + D L ++NMY KCG LE AR V D
Sbjct: 107 TYASILGACSAMELLELGKEVHARVSRSRFKSDPALAAALINMYSKCGVLESARRVFDG- 165
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
I+S D + WNA+I+G+ A EA+ LF M+ + D ++ ++L AC
Sbjct: 166 -----IQSVDPSPWNAMISGLVQHGRAREALGLFERMKAESVRIDKVSYLTILSAC 216
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 6/138 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F+ ++ + RI +Y ++S C +L L G ++H+H + D+V++ +
Sbjct: 189 EALGLFERMKAES-VRIDKVSYLTILSACCALEDLHEGIRIHEHASACGMDKDLVVETAV 247
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
NMY KC ++ AR + D M ++ ++ SWN++IA A EA+ L+ M++
Sbjct: 248 FNMYSKCRQVDLARKMFDGMNEKT-----NVVSWNSMIAAYAQSGRGREALELYELMKEE 302
Query: 145 ELIPDGLTVRSLLCACTS 162
+ PD +T L ACTS
Sbjct: 303 GVQPDDITYAGALGACTS 320
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 7/144 (4%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS-QPD 77
IQ Y+ + + F+ T A ++ CS + +LQ G+ +H I ++++ Q
Sbjct: 385 IQQGYDREALDLYLRMVSEGFQPSEITLAGALAACSRIGALQEGKAIHSRIQATETLQNC 444
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ LQN +LNMY KCG L A + + +R D SWN II G A + +E +SL
Sbjct: 445 LFLQNSLLNMYAKCGCLAIANTMFSNLQRR------DSFSWNTIIVGHAHHGDVDEVLSL 498
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
EM + PD +T +L AC+
Sbjct: 499 HGEMVQDGVDPDYVTFACVLLACS 522
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 11/139 (7%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
EAL ++ ++ ++P TYA + C+S G ++H I SK + DV L
Sbjct: 291 EALELYELMKEEG---VQPDDITYAGALGACTSYGGSAKGAEIHSRITESKIRTDVFLDT 347
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
I+NMY KCG LE A ++M ++N + +W+A++ EA+ L+ M
Sbjct: 348 AIVNMYAKCGELETAMSYFEKMRRKNAV------TWSAMVGAFIQQGYDREALDLYLRMV 401
Query: 143 DRELIPDGLTVRSLLCACT 161
P +T+ L AC+
Sbjct: 402 SEGFQPSEITLAGALAACS 420
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 12/125 (9%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
FR T++ + S+CS L + I +S +VV++N +++ Y + G L A
Sbjct: 5 GFRPNGVTFSGVASSCSGREELD---TIQASIAASDFHSNVVVKNSLVSAYTRSGDLRSA 61
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R V D IE+ DL SWN+++ + + E + LF +M ++ PD +T S+L
Sbjct: 62 RKVFDS------IENKDLISWNSMVVAYSQHGHGEEMLELFRKM---DVEPDSITYASIL 112
Query: 158 CACTS 162
AC++
Sbjct: 113 GACSA 117
>gi|255556578|ref|XP_002519323.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541638|gb|EEF43187.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 396
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 7/141 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N ++E+ FD ++ + A ++S C+ L +L+ G+ +H +I + D L
Sbjct: 255 NRFHESFALFDRMRAE-GVVLDKFVAATMLSACTGLGALEQGKWIHGYIEKKGIEKDSKL 313
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
I++MY KCGSLE A V +P + + +SWN +I G+A A+ LF E
Sbjct: 314 ATAIIDMYCKCGSLEKALEVFKGLPHKGI------SSWNCMIGGLAMHGKGEAAIELFKE 367
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M L PD +T +LL AC
Sbjct: 368 MEKEMLAPDRITFVNLLSACA 388
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 25/143 (17%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +I C +QLG+++H H+L V+ N +++MY + + E+AR V M
Sbjct: 146 TFPSVIRACCIHDDIQLGKQIHAHVLKLGFGAHVISLNNLIHMYARFQAFEEARCVLYSM 205
Query: 105 PQRNVIESPDL-------------------------ASWNAIIAGVASPSNANEAMSLFS 139
P++N I L ASWNA+IA + +E+ +LF
Sbjct: 206 PEQNFISWTTLISGYSQWGLVDEAFRVFQSMPERNSASWNAMIAAYVQGNRFHESFALFD 265
Query: 140 EMRDRELIPDGLTVRSLLCACTS 162
MR ++ D ++L ACT
Sbjct: 266 RMRAEGVVLDKFVAATMLSACTG 288
>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 78/140 (55%), Gaps = 8/140 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AFD+L RP+ +A ++S C ++ L+ G+++H H+L + + ++Q+ ++N
Sbjct: 355 AFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALIN 414
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCGS+++A + DE N++ SW A+I G A + EA+ LF ++ L
Sbjct: 415 MYSKCGSIKEASKIFDEAEYNNIV------SWTAMINGYAEHGYSQEAIDLFKKLPKVGL 468
Query: 147 IPDGLTVRSLLCACTSPSNV 166
PD +T ++L AC+ V
Sbjct: 469 RPDSVTFIAVLAACSHAGLV 488
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 6/144 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F + + P + + C S+ G +H + + + V + + +
Sbjct: 50 EALSLFSKMWVEPGLHMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSAL 109
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MY K G +++ +V EMP RNV+ SW AIIAG+ EA++ FS+M +
Sbjct: 110 VDMYMKIGKVDEGCIVFKEMPLRNVV------SWTAIIAGLVRAGYNKEALAYFSDMWIQ 163
Query: 145 ELIPDGLTVRSLLCACTSPSNVLY 168
++ D T S L AC + Y
Sbjct: 164 KVGCDTYTFSSALKACADSGALNY 187
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A +IS C++L ++ G ++H H++ + + N I+ MY KC L+ A V +
Sbjct: 272 TFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGL 331
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+R++I SW+ +I+G A EA S MR P+ S+L C
Sbjct: 332 SRRDII------SWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVC 381
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 6/124 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ + C+ +L GR++H L + N + MY KCG L+ + + M
Sbjct: 171 TFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESM 230
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
QR+V+ SW II A+ F MR+ ++ P+ T +++ C +
Sbjct: 231 TQRDVV------SWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLG 284
Query: 165 NVLY 168
+ +
Sbjct: 285 RIEW 288
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N +L K G L +AR + D+M QR+ I SW II+G + N EA+SLFS+M
Sbjct: 5 NLVLKNLVKTGHLNNARQLFDKMLQRDEI------SWTTIISGYVNGMNTTEALSLFSKM 58
>gi|357487485|ref|XP_003614030.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515365|gb|AES96988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 498
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 9/151 (5%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
++N++ + + F + F ++ L+S C+ L L LGR VH ++ V
Sbjct: 188 VENVWLSDGIGYFFKMRDCAFEPDETSMVLLLSVCAELGYLSLGRWVHSQLILKGMVLSV 247
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
L +++MYGK G+L ARVV + M +RNV +W+A+I G+A A EA+ LF
Sbjct: 248 HLGTALVDMYGKSGALGYARVVFERMEKRNV------WTWSAMIMGLAQHGFAEEALVLF 301
Query: 139 SEMRDRE---LIPDGLTVRSLLCACTSPSNV 166
M D++ + P+ +T +LCAC+ V
Sbjct: 302 DMMNDKKSNNISPNYVTYLGVLCACSHAGMV 332
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 11/139 (7%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
E++ F ++ N ++P+ TY + +C+ L G++VH ++ DV + N
Sbjct: 94 ESIWVFKKMRENG---VKPNKLTYPFIFKSCAMALVLCEGKQVHADLVKFGLDSDVYVCN 150
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++N YG C + AR V DEM R ++ SWN+++ ++ + F +MR
Sbjct: 151 NMINFYGCCKKIVYARKVFDEMCVRTIV------SWNSVMTACVENVWLSDGIGYFFKMR 204
Query: 143 DRELIPDGLTVRSLLCACT 161
D PD ++ LL C
Sbjct: 205 DCAFEPDETSMVLLLSVCA 223
>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g16835, mitochondrial; AltName: Full=Protein DYW10;
Flags: Precursor
gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 656
Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 46/122 (37%), Positives = 72/122 (59%), Gaps = 8/122 (6%)
Query: 41 IRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
IRP S + + CS L +LQLGR++H + S DV +++MY KCG L DA
Sbjct: 280 IRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAW 339
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+ + M +++V+ +WNA+I+G A NA++A+ LF EM D ++ PD +T ++L
Sbjct: 340 KLFEVMKKKDVV------AWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLL 393
Query: 159 AC 160
AC
Sbjct: 394 AC 395
Score = 38.5 bits (88), Expect = 0.92, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+PD N +L+ Y + + E A+ D MP + D ASWN +I G A +A
Sbjct: 121 EPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFK------DAASWNTMITGYARRGEMEKA 174
Query: 135 MSLFSEMRDR 144
LF M ++
Sbjct: 175 RELFYSMMEK 184
Score = 35.8 bits (81), Expect = 6.5, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 26/122 (21%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIE----------------- 111
+ S + + V N +++ Y +CG LE A P R V+
Sbjct: 177 LFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELA 236
Query: 112 ---------SPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ +L +WNA+I+G S + + LF M + + P+ + S L C+
Sbjct: 237 EAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSE 296
Query: 163 PS 164
S
Sbjct: 297 LS 298
>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
Length = 796
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 74/129 (57%), Gaps = 12/129 (9%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKCGSLEDARVVS 101
P Y ++ C+S+ +L+ G+ +H I +K + DV+L+N +L MY KCGSLEDA+ +
Sbjct: 121 PVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLF 180
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ M R + +SWNA+IA A + EA+ L+ +M ++ P T S+L AC
Sbjct: 181 ERMSGRRSV-----SSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSAC- 231
Query: 162 SPSNVLYLD 170
SN+ LD
Sbjct: 232 --SNLGLLD 238
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 8/128 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ PS T+ ++S CS+L L GRK+H I S ++ D+ LQN +L MY +C L+DA
Sbjct: 217 VEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAA 276
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+ +P+R+V+ SW+A+IA A +EA+ +S+M+ + P+ T S+L
Sbjct: 277 KIFQRLPRRDVV------SWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLL 330
Query: 159 ACTSPSNV 166
AC S ++
Sbjct: 331 ACASVGDL 338
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
++N T Y+C+IS C+SL + R+ H I + D VL ++NMY + G
Sbjct: 414 MKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWG 473
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
+LE AR V D+M R+ + +W +IAG A A+ L+ EM P LT
Sbjct: 474 NLESARQVFDKMSSRDTL------AWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELT 527
Query: 153 VRSLLCACT 161
+L AC+
Sbjct: 528 FMVVLYACS 536
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+L++EA+ + +Q +RP+ T+A ++ C+S+ L+ GR VHD IL + + +
Sbjct: 301 DLFDEAIEFYSKMQLEG---VRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITL 357
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
V ++++Y GSL++AR + D+ IE+ D W +I G + + + L+
Sbjct: 358 VNGTALVDLYTSYGSLDEARSLFDQ------IENRDEGLWTVLIGGYSKQGHRTGVLELY 411
Query: 139 SEMRDRELIPDGLTVRS-LLCACTS 162
EM++ +P + S ++ AC S
Sbjct: 412 REMKNTTKVPATKIIYSCVISACAS 436
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 13/110 (11%)
Query: 53 CSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIES 112
C L S+ R++HD I S + +V L N I+ YGKCGS+ ARV D + ++N
Sbjct: 37 CQDLESV---RQIHDRI-SGAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDY-- 90
Query: 113 PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
SW +++ A + A+ L+ M +L P+ + ++L AC S
Sbjct: 91 ----SWGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACAS 133
>gi|302766259|ref|XP_002966550.1| hypothetical protein SELMODRAFT_399 [Selaginella moellendorffii]
gi|300165970|gb|EFJ32577.1| hypothetical protein SELMODRAFT_399 [Selaginella moellendorffii]
Length = 732
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TYA L++ CSS L G+ +H ++ D V+++++L MYGKCGSLED + S E+
Sbjct: 219 TYATLLNACSSGEDLGEGKSIHRSVVDMGLDRDEVVKSFLLGMYGKCGSLEDVKRSSCEV 278
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+RN I +WN II A S+ +A+ F +M+ + + D +T +L C+SP+
Sbjct: 279 HERNTI------AWNTIIGAYARYSDHFQALRSFQQMQLQGVKADAVTFVLMLGTCSSPA 332
Query: 165 NV 166
++
Sbjct: 333 HL 334
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 71/128 (55%), Gaps = 12/128 (9%)
Query: 41 IRPSTYACLISTCSSLRSLQL--GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
IRP+ LI+ + LR+ L GR+VH ++L + D L N +++MY K G +++A
Sbjct: 116 IRPN----LITMVAVLRACNLTDGRQVHGYVLEAGMSLDTSLGNALVDMYCKTGDVDEAD 171
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+V EMP+R+VI SWN +I+G A + E + M+ L P +T +LL
Sbjct: 172 LVLREMPKRDVI------SWNIMISGYAQSGDCKEGLRCLWRMQQDGLSPTKVTYATLLN 225
Query: 159 ACTSPSNV 166
AC+S ++
Sbjct: 226 ACSSGEDL 233
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 8/141 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
+AL +F +Q + T+ ++ TCSS L G +HD I S +++ N +
Sbjct: 301 QALRSFQQMQLQ-GVKADAVTFVLMLGTCSSPAHLAQGILLHDWI-SQLGFESIIVHNSL 358
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
MY KCGSL+ AR + + MP RN + SWN++I+ +A F M+
Sbjct: 359 TAMYAKCGSLDAARKMFEGMPSRNSV------SWNSLISAAIQHGCYADAHKFFQRMKLE 412
Query: 145 ELIPDGLTVRSLLCACTSPSN 165
PD +T S+L ACT +N
Sbjct: 413 GSRPDEVTCISMLDACTKQAN 433
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 9/123 (7%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP T+ + C+ +L GRKVH +I S + D+ N ++NMYGKC S EDA
Sbjct: 14 VRPDSVTFVTCLRACTVEGALDDGRKVHAYIRESGLETDIYAANALINMYGKCRSPEDAF 73
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSN-ANEAMSLFSEMRDRELIPDGLTVRSLL 157
+ M ESP++ SW ++I A + E++ LF +M + P+ +T+ ++L
Sbjct: 74 QLFSRM------ESPNVVSWTSVIGNFAQYGHLGRESVLLFRKMELEGIRPNLITMVAVL 127
Query: 158 CAC 160
AC
Sbjct: 128 RAC 130
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Query: 45 TYACLISTCSSLRS-LQLGRKVHDHILSS--KSQPDVVLQNYILNMYGKCGSLEDARVVS 101
TY + CS L L G+ +H ++L ++ D V ++NMYGKCGSL++AR +
Sbjct: 518 TYVAALDACSGLAGGLAHGKLIHGYMLDHGFSNRLDTVAATALVNMYGKCGSLQEARKIF 577
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
DEM R+V+ +W ++I A S +A+ L M + D + S+L C
Sbjct: 578 DEMLHRDVV------TWTSLIVAYAQHSEIEQALKLVKIMEQDGVKVDDVVFLSILSGC 630
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 11/141 (7%)
Query: 29 AFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A F Q RP C ++ C+ + + G +H ++ S + N ++
Sbjct: 402 AHKFFQRMKLEGSRPDEVTCISMLDACTKQANAKEGSSIHQMVVESGFDKRTGVANALIF 461
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY K G E AR V D M +RN + SWN I+A +A+ +F +M ++
Sbjct: 462 MYAKLGDHEAARNVFDAMAERNTV------SWNTILAAYVEKGLNRDAVEMFWKM---DV 512
Query: 147 IPDGLTVRSLLCACTSPSNVL 167
D +T + L AC+ + L
Sbjct: 513 ARDKVTYVAALDACSGLAGGL 533
>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Cucumis sativus]
gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Cucumis sativus]
Length = 705
Score = 82.8 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 80/142 (56%), Gaps = 7/142 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
+ L E+L F +Q N + T A ++S C+ L +L LGR++H H++ ++ +V+
Sbjct: 393 KGLGEESLEVFRKMQL-ANVKANSVTIASVLSICAMLAALNLGREMHGHVIRARMDDNVL 451
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ N ++NMY KCGS + +V +++ R+ I SWN++IAG + +A++ F+
Sbjct: 452 VGNGLINMYTKCGSFKPGFMVFEKLENRDSI------SWNSMIAGYGTHGLGKDALATFN 505
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
M PDG+T + L AC+
Sbjct: 506 HMIKSGYRPDGVTFIAALSACS 527
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
A ++S C+ L +L G+ +H +++ + +N ++ +YGK G + DA + EM
Sbjct: 279 AVVLSVCADLATLNSGQMIHGYMVKGGFNDYLFAKNALITLYGKGGGVGDAEKLFHEMKV 338
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR----ELIPDGLTVRSLLCACTS 162
+N L SWNA+I+ A ++A+ L S++ E+ P+ +T +++C S
Sbjct: 339 KN------LVSWNALISSFAESGVYDKALELLSQLEKMEAYPEMKPNVITWSAIICGFAS 392
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ S+L + + + +H H++ Q + + N ++ MY K ++DAR V D+M
Sbjct: 141 TFPLLLRASSNLGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERMDDARKVFDKM 200
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
++V+ SWN +++G A + N A +F +M + P+ +T SLL +
Sbjct: 201 RIKSVV------SWNTMVSGYAYNYDVNGASRMFHQMELEGVEPNPVTWTSLLSS 249
Score = 37.7 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 6/120 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P + L+ C+ + Q ++VH + + + + ++++Y + G + DAR V
Sbjct: 38 PDFFDHLLRQCNGI---QHSKQVHSATVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFG 94
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P + WN+II EA+ L+ +MR+ ++ DG T LL A ++
Sbjct: 95 SAPFECY---SNFLLWNSIIRANVYHGYCIEALQLYGKMRNYGVLGDGFTFPLLLRASSN 151
>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Vitis vinifera]
Length = 709
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 86/151 (56%), Gaps = 12/151 (7%)
Query: 19 IQN-LYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQ 75
+QN +++E L F Q +I+P+ +++ ++ C+ L +L LG+++H +I+ S+
Sbjct: 313 VQNGMFDEGL---KFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFD 369
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
+V + + +++MY KCG++ AR + D+M E D+ SW A+I G A +A +A+
Sbjct: 370 GNVFIASALVDMYAKCGNIRTARWIFDKM------ELYDMVSWTAMIMGYALHGHAYDAI 423
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
SLF M + P+ + ++L AC+ V
Sbjct: 424 SLFKRMEVEGVKPNYVAFMAVLTACSHAGLV 454
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 35 NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSL 94
N + R T + ++ + +L G+++H + + + DV + + +++MY KC +
Sbjct: 228 GNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRV 287
Query: 95 EDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVR 154
+D+ V +PQ + I SWN+IIAG +E + F +M ++ P+ ++
Sbjct: 288 DDSCRVFYMLPQHDGI------SWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFS 341
Query: 155 SLLCAC 160
S++ AC
Sbjct: 342 SIMPAC 347
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 35/142 (24%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA------- 97
+ ++ +C+ ++ L+ G VH I+ D+ N ++NMY K SLE+
Sbjct: 108 VFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVF 167
Query: 98 ----------------------RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
R V + MP+R D+ SWN +I+G A +A+
Sbjct: 168 DEGKTSDVYSKKEKESYYLGSLRKVFEMMPKR------DIVSWNTVISGNAQNGMHEDAL 221
Query: 136 SLFSEMRDRELIPDGLTVRSLL 157
+ EM + +L PD T+ S+L
Sbjct: 222 MMVREMGNADLRPDSFTLSSVL 243
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+ SS++S +++H IL + S P L + IL++Y L D+ ++ + +P
Sbjct: 11 LLQNPSSVKSKSQAKQLHAQILRT-SLPSPSLLSTILSIYSNLNLLHDSLLIFNSLPS-- 67
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P +W +II S ++S F +M PD S+L +CT
Sbjct: 68 ---PPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCT 117
>gi|347954508|gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
Length = 447
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 82/144 (56%), Gaps = 11/144 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ + EAL F +Q + ++P A + ++ C++L +L G +H +++S + +
Sbjct: 131 KGFHEEALSWFREMQISG---VKPDYVAIIAALAACTNLGALSFGLWIHRYVMSQDFKNN 187
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + N ++++Y +CG +E AR V D+M +R V+ SWN++I G A+ NA+E++
Sbjct: 188 VRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVV------SWNSVIVGFAANGNAHESLFY 241
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F +M++ PD +T L AC+
Sbjct: 242 FRKMQEEGFKPDAVTFTGALTACS 265
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 28/145 (19%)
Query: 45 TYACLISTCSSL--RSLQLGRKVHDHILS-SKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
T+ L+S C S LG +H + + V++ IL MY K G AR++
Sbjct: 20 TFIALLSGCGDFPSGSEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRFRKARLIF 79
Query: 102 DEMPQRNVIE-------------------------SPDLASWNAIIAGVASPSNANEAMS 136
D M +N + + DL SW A++ G EA+S
Sbjct: 80 DYMEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRDLISWTAMVNGFVKKGFHEEALS 139
Query: 137 LFSEMRDRELIPDGLTVRSLLCACT 161
F EM+ + PD + + + L ACT
Sbjct: 140 WFREMQISGVKPDYVAIIAALAACT 164
>gi|225470674|ref|XP_002269391.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 587
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 6/138 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ + L F + TN R T+ ++ C+ L S+ G+++H H++ ++ D+ + N
Sbjct: 284 HAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGN 343
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++NMY KCG + A + +M N L SWN IIAG + A+ LF +M
Sbjct: 344 ALVNMYAKCGCIGYAYDIFSKMVHHN------LVSWNTIIAGFGNHGLGERAVELFEQMN 397
Query: 143 DRELIPDGLTVRSLLCAC 160
+ PD +T LL AC
Sbjct: 398 ASGIRPDSVTFIGLLTAC 415
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 9/122 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + L+ CS ++L+ G +H +L + +Q DV + N++LNMY KCG AR V DEM
Sbjct: 5 TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEM 64
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
++N L SW+A+I+G A+ L+S+M L+P+ S++ AC S S
Sbjct: 65 FEKN------LVSWSAMISGYDQAGEPQMAIDLYSQMF---LVPNEYVFASVISACASLS 115
Query: 165 NV 166
V
Sbjct: 116 AV 117
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+A +IS C+SL ++ LG+K+H L + + N +++MY KC DA V P
Sbjct: 104 FASVISACASLSAVTLGQKIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTP 163
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165
+ P+ S+NA+I G + F MR + LIPD +L CT+ N
Sbjct: 164 E------PNCVSYNALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTEN 217
Query: 166 V 166
+
Sbjct: 218 L 218
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+ ++ C++ +L+ G ++H + + N I+ MY + +++A
Sbjct: 205 FMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFIGNVIITMYSELNLIQEAE------K 258
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCACTS 162
+IE D+ SWN +IA + + + + +F M + + PD T S L AC
Sbjct: 259 AFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAG 316
>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
[Vitis vinifera]
Length = 575
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 12 TFYNSQPIQNLYN---------------EALVAFDFLQNNTNFRIRPSTYACLISTCSSL 56
+ ++ P++NL N EAL AF +Q F T A ++S CS L
Sbjct: 276 SIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAE-GFEPDEVTIASVLSACSQL 334
Query: 57 RSLQLGRKVHDHILSSKSQPDVVLQNYILN----MYGKCGSLEDARVVSDEMPQRNVIES 112
L G+K+H H+++ K + L ++LN MY KCG L +AR++ + M RN
Sbjct: 335 GLLDAGKKIH-HMMNHKG---IKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRN---- 386
Query: 113 PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
A WN++I+G A + EA+ F M D PD +T S+L AC V
Sbjct: 387 --RACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFV 438
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 65/128 (50%), Gaps = 8/128 (6%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
Q EAL+ + L+ + + ++ C+SL ++ G+ +H + + DV+
Sbjct: 73 QGAPREALLVYTGLRRKGVYLL--GVAPLVLKACASLSIVKHGKALHAESIKNGVDFDVM 130
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ ++ MY KCG++ D+R V D MP+RN + +WNA+I G ++ A+ LF
Sbjct: 131 IGTSLVCMYAKCGNVVDSRKVFDYMPERNAV------TWNAMICGYLGNGDSKSAVLLFE 184
Query: 140 EMRDRELI 147
+M R +
Sbjct: 185 KMSIRTAV 192
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+ Q + + +++ Y K G++++AR + D +P RN++ +WN++I+G A
Sbjct: 246 VFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLV------NWNSLISGYAQN 299
Query: 129 SNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ EA+ F +M+ PD +T+ S+L AC+
Sbjct: 300 GFSEEALEAFGKMQAEGFEPDEVTIASVLSACS 332
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+VV +++ Y + +E AR V + MPQRN +W+++I+G N EA S
Sbjct: 223 NVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFF------AWSSMISGYCKKGNVKEARS 276
Query: 137 LFSEMRDRELI 147
+F + R L+
Sbjct: 277 IFDRIPVRNLV 287
>gi|255566014|ref|XP_002523995.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536722|gb|EEF38363.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 212
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 72/127 (56%), Gaps = 8/127 (6%)
Query: 38 NFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
+F ++P TY +I+ C++L ++G V +H+L D+ + N +++MY + G L
Sbjct: 3 DFNVKPDTYTFPSVINACAALGDFEIGNVVQNHVLEIGFGFDLYIGNALVDMYARFGDLV 62
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
AR V +EM R D+ SWN++I+G ++ +EA+ ++ E+R L PD T+ S
Sbjct: 63 KARNVFEEMTHR------DIVSWNSLISGYSANGYWDEALEIYYELRIAGLKPDNFTLSS 116
Query: 156 LLCACTS 162
+L AC
Sbjct: 117 VLPACGG 123
>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
Length = 801
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 75/141 (53%), Gaps = 4/141 (2%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
L EA F ++ + T+ ++ +S S+ GR++H ++S+ + D V
Sbjct: 405 HGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTV 464
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+QN +LNMY KCGSL+DA+ + D ++ D+ +W +++AG A A A+ LF
Sbjct: 465 IQNALLNMYAKCGSLDDAQAIFD----KSSSNQEDVIAWTSLVAGYAQYGQAERALKLFW 520
Query: 140 EMRDRELIPDGLTVRSLLCAC 160
M+ + + P+ +T S L AC
Sbjct: 521 TMQQQGVRPNHITFISALTAC 541
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 71/125 (56%), Gaps = 6/125 (4%)
Query: 39 FRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
+RP+ +A L++ CS L +L GR++H I + + VL N +++MY KCGSL D
Sbjct: 1 MEVRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLID 60
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRS 155
A+ D +P+ + D+ +WNA+I+ +A EA+ LF +M D P+ +T S
Sbjct: 61 AKQAFDRLPRAS---KRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVS 117
Query: 156 LLCAC 160
+L +C
Sbjct: 118 VLDSC 122
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 77/151 (50%), Gaps = 19/151 (12%)
Query: 25 EALVAFD--FLQNNTNFRIRPS--TYACLISTCSSL---RSLQLGRKVHDHILSSKSQPD 77
EALV F+ L+ +RPS T+ ++ C++ + +G+++ + + + D
Sbjct: 304 EALVLFERMLLEG-----VRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGD 358
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEM-PQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+ N LNMY KCGSL DAR V + + P R D +WN+++A EA
Sbjct: 359 TAVANATLNMYAKCGSLADARAVFERISPTRR-----DCITWNSMLAAYGHHGLGKEAFE 413
Query: 137 LFSEMRDRELI-PDGLTVRSLLCACTSPSNV 166
LF M +L+ P+ +T ++L A TS +++
Sbjct: 414 LFQAMEAEKLVKPNKVTFVAVLDASTSRTSI 444
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 45 TYACLISTC--SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV-- 100
T+ ++ +C + L SL+ R +H I+ + + + ++ +++ YGK GSL+DA V
Sbjct: 114 TFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFL 173
Query: 101 --SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
SDE P S L + +A+I+ E++ LF M P G+T+ S+L
Sbjct: 174 RKSDEEP------STSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLN 227
Query: 159 ACT 161
AC+
Sbjct: 228 ACS 230
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D VL +L Y + L AR D I+SPD+ SWNA+ A EA+
Sbjct: 254 DNVLGTTLLTTYARSNDLSRARATFD------AIQSPDVVSWNAMAAAYLQHHRPREALV 307
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTS 162
LF M + P T + L AC +
Sbjct: 308 LFERMLLEGVRPSVATFITALTACAA 333
>gi|414868050|tpg|DAA46607.1| TPA: hypothetical protein ZEAMMB73_506268 [Zea mays]
Length = 369
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
FR T + C+ ++L+ G+++H I+ + D+ + + ++ MY +CG + DA
Sbjct: 36 GFRPNEFTVCSALKACAEEKALRFGKQLHGAIVKKLYKYDIHVGSALVTMYARCGEVFDA 95
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+ V D+MP+RN I +W ++I+G A EA+ LF +M+ R + + LT+ SLL
Sbjct: 96 QTVFDKMPRRNTI------TWTSMISGYAQSGCGEEAVLLFRKMKMRRVFVNHLTIVSLL 149
Query: 158 CACTSPSNVLY 168
AC S ++ +
Sbjct: 150 SACGSMQSIYH 160
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY+ + C+ L +LQ GR++H + +++ +V + +++MY +CG +++AR V D M
Sbjct: 245 TYSSALKACARLEALQDGRRIHGVVNKTQAFSNVFVGCSLIDMYMRCGKVDEARRVFDAM 304
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P+ N L +W +I G + EA+ M+ + D + ++L +C
Sbjct: 305 PEHN------LVTWKVMITGFTQNGRSEEALKYMFLMQQEGYVVDEFVLSTVLSSC 354
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
EA++ F ++ F + T L+S C S++S+ G+++H I+ + + ++ + +
Sbjct: 124 EEAVLLFRKMKMRRVF-VNHLTIVSLLSACGSMQSIYHGKELHAQIIKNCMEENLQIGST 182
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++ Y + G A + + MP R D +W A+I+G + + EA+ EM
Sbjct: 183 LVWFYNRRGEHTYATRILEAMPDR------DAVAWTAMISGYNNLGHNVEALKSLDEMLW 236
Query: 144 RELIPDGLTVRSLLCAC 160
++P+ T S L AC
Sbjct: 237 DGVVPNTYTYSSALKAC 253
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 82.8 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 80/141 (56%), Gaps = 7/141 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N + E L F +Q +N + T +++ C+ L +L+LG +I +K + D +
Sbjct: 351 NRFKEVLTLFRDMQM-SNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFI 409
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MY KCG++E A+ + +EM ++ D +W A+I G+A+ + EA+++FS
Sbjct: 410 GNALIDMYFKCGNVEKAKKIFNEMQKK------DKFTWTAMIVGLANNGHGEEALTMFSY 463
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M + + PD +T ++CACT
Sbjct: 464 MLEASVTPDEITYIGVMCACT 484
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 26/142 (18%)
Query: 45 TYACLISTCSSLRSLQLGRKVHD-HILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T ++S CS L+ L G+ +++ +I +P+++L+N +++M+ CG ++ AR V DE
Sbjct: 241 TLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDE 300
Query: 104 MPQRNVI-----------------------ESP--DLASWNAIIAGVASPSNANEAMSLF 138
M R+VI + P D SW A+I G + E ++LF
Sbjct: 301 MKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLF 360
Query: 139 SEMRDRELIPDGLTVRSLLCAC 160
+M+ + PD T+ S+L AC
Sbjct: 361 RDMQMSNVKPDEFTMVSILTAC 382
Score = 37.4 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSK-SQPDVVLQNYILNMYGK-CGSLEDARVVSDEMPQ 106
L+ TC+++ + ++H + + S + L I+ K G + AR V DE+PQ
Sbjct: 41 LLETCNTMYEIN---QIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQ 97
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
P + WN +I G + + + +SL+ M + PDG T LL
Sbjct: 98 ------PSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLL 142
>gi|302796316|ref|XP_002979920.1| hypothetical protein SELMODRAFT_111891 [Selaginella moellendorffii]
gi|300152147|gb|EFJ18790.1| hypothetical protein SELMODRAFT_111891 [Selaginella moellendorffii]
Length = 719
Score = 82.8 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 18/150 (12%)
Query: 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHIL 70
F +S+ +LY E L+ + PS T+ L+S C+ L SL+ VHDHI
Sbjct: 106 FGHSRQALDLYREMLMD----------GVSPSRITFLSLLSACTKLGSLREASLVHDHIR 155
Query: 71 SSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN 130
S +Q + +QN ++ MY +CGS+E+A++V D MP+R+VI SW ++IA A +
Sbjct: 156 QSGNQQGLSIQNGVVCMYHRCGSVENAKLVFDAMPRRDVI------SWTSMIAAYAQSGS 209
Query: 131 ANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
++A+ L+ M P+ +T + + AC
Sbjct: 210 CDDAIRLYRRMELEGEKPNKVTFLAAMEAC 239
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S C++ ++ GR VH + DV + N +++ YGKCG L +AR V D+M
Sbjct: 507 TLVTVLSACAAGSAIAKGRAVHRFAAENGLMSDVAVANGVVDFYGKCGCLLEARAVLDKM 566
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ D +WN+++AG A E + F+EM+ R + +T S+L AC+
Sbjct: 567 AKL------DEVTWNSLLAGYAQHGYGVETLEAFTEMQHRGYSANRITFMSVLHACS 617
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 7/133 (5%)
Query: 29 AFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY 88
AF Q + P+ A L++T +S + R VH+ + + ++ +LN Y
Sbjct: 14 AFALFQKLHVHGVLPNQIA-LVATLNSCLADHQVRSVHECAREIHCEHEKIVATALLNAY 72
Query: 89 GKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP 148
GKCG LE A + M +R DL SW A+I G A ++ +A+ L+ EM + P
Sbjct: 73 GKCGDLESAGAIFRGMEER------DLISWTALITGYAQFGHSRQALDLYREMLMDGVSP 126
Query: 149 DGLTVRSLLCACT 161
+T SLL ACT
Sbjct: 127 SRITFLSLLSACT 139
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 7/91 (7%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ-RNVIESPDLASWNAIIAGVASPSNANE 133
+ D +++N ++NMYGKCG EDA + + P+ +NVI SWN +IA A
Sbjct: 329 ESDSIVRNALMNMYGKCGCAEDALRLFEASPRLQNVI------SWNTVIAVHAQNGEHQR 382
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+M LF M+ + D T+ ++L ACT+P+
Sbjct: 383 SMVLFHRMQLAGVPADRATLLTVLYACTNPA 413
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T ++ C++ +L+ GR V + +V Q ++ M+ KC +L+ A V +
Sbjct: 400 ATLLTVLYACTNPAALRTGRIVRELATQRGYHHEVKFQTALVLMHAKCETLDAAVEVFES 459
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNA-----NEAMSLFSEMRDRELIPDGLTVRSLLC 158
M R D SWNA++A + + E+ L +M+ +PD +T+ ++L
Sbjct: 460 MHHR------DTPSWNAMVAAYGYHACSLNGRWKESFKLLQQMQVDGAVPDTVTLVTVLS 513
Query: 159 ACTSPSNV 166
AC + S +
Sbjct: 514 ACAAGSAI 521
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 11/130 (8%)
Query: 45 TYACLISTCS-SLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T+ + C+ SL + +H ++ S + DVV+ ++NMYGK AR +
Sbjct: 231 TFLAAMEACAKSLAPEEEAEALHRCVIESGLETDVVVATALVNMYGK-----SARTLGRA 285
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL-----C 158
+ +E D WNA+IA A + A+ L +M+ + D + +L+ C
Sbjct: 286 QEIFDGVEKRDNVVWNALIAAYAQHGCRDRALDLLEQMQRQSFESDSIVRNALMNMYGKC 345
Query: 159 ACTSPSNVLY 168
C + L+
Sbjct: 346 GCAEDALRLF 355
>gi|302789109|ref|XP_002976323.1| hypothetical protein SELMODRAFT_104848 [Selaginella moellendorffii]
gi|300155953|gb|EFJ22583.1| hypothetical protein SELMODRAFT_104848 [Selaginella moellendorffii]
Length = 371
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 82/149 (55%), Gaps = 5/149 (3%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
Q + E LV F+ ++ + P+ T+ ++ C+ L++L+ GR +H + + +
Sbjct: 120 QAHHREPLVLFERMEAED---VTPNKVTFVTVLYACAKLKALEEGRAIHARVSEAGLASE 176
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V++ ++N+Y KCG L++AR + D M + +VI S D+ W +++ A + +A+ +
Sbjct: 177 VIVGTALVNLYAKCGWLDEAREIFDSMRREDVISSRDMVLWTSMMVAYARNAQGWKALEI 236
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNV 166
F ++ LIPD + +LL AC+S +
Sbjct: 237 FWLLQQEGLIPDDVVFVALLSACSSVGAI 265
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 27/148 (18%)
Query: 41 IRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
++P A L + C++L L+ G +H +IL + D L N I+N+YGKCGS +A+
Sbjct: 6 LKPDAVAFLPVLEACAALERLKDGLLLHGYILEAGLVVDSALGNSIINLYGKCGSFSEAQ 65
Query: 99 VVSDEMPQRNVI-------------------------ESPDLASWNAIIAGVASPSNANE 133
V D MP +N+I + D+ +WNAII+ A ++ E
Sbjct: 66 EVFDRMPHKNLIVGNATVNMYGKCGSLEDAYAVFDRMPARDVITWNAIISAYAHQAHHRE 125
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ LF M ++ P+ +T ++L AC
Sbjct: 126 PLVLFERMEAEDVTPNKVTFVTVLYACA 153
>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g68930-like [Cucumis
sativus]
Length = 695
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 18/141 (12%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
L+NE L+ I P +Y + ++S+C+ L SL G+ VH + + +++
Sbjct: 309 LFNEMLLE----------HIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLL 358
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ + +++MY KCG ++DAR V + MP RNV+ SWNA+I G A + +A+ LF
Sbjct: 359 VSSALIDMYSKCGFIDDARSVFNLMPTRNVV------SWNAMIVGCAQNGHDKDALELFE 412
Query: 140 EMRDRELIPDGLTVRSLLCAC 160
M ++ PD +T +L AC
Sbjct: 413 NMLQQKFKPDNVTFIGILSAC 433
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 7/135 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
E+L F +Q F T +++ + L L+ G+++H I+ +V + N +
Sbjct: 138 ESLELFKRMQRE-GFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNAL 196
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+MY KCG +E AR + D + ++N L SWN +I+G A + + L +MR
Sbjct: 197 TDMYAKCGEIEQARWLFDCLTKKN------LVSWNLMISGYAKNGQPEKCIGLLHQMRLS 250
Query: 145 ELIPDGLTVRSLLCA 159
+PD +T+ +++ A
Sbjct: 251 GHMPDQVTMSTIIAA 265
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 72 SKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNA 131
S PD V + I+ Y +CG +++AR V E ++ D+ W A++ G A
Sbjct: 250 SGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEK------DIVCWTAMMVGYAKNGRE 303
Query: 132 NEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+A+ LF+EM + PD T+ S++ +C
Sbjct: 304 EDALLLFNEMLLEHIEPDSYTLSSVVSSCA 333
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQP-DVVLQNYILNMYGKCGSLEDARVVSDE 103
Y L+ C + +++ H+ QP D L N +L++Y K G L DA+ + D+
Sbjct: 24 AYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDK 83
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTV 153
M +R D SWNA+++ A + + F M R+ + T+
Sbjct: 84 MLKR------DXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTI 127
>gi|302794444|ref|XP_002978986.1| hypothetical protein SELMODRAFT_109727 [Selaginella moellendorffii]
gi|300153304|gb|EFJ19943.1| hypothetical protein SELMODRAFT_109727 [Selaginella moellendorffii]
Length = 670
Score = 82.8 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 9/121 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILS---SKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
TYA L++ C R++ GR +H HI S D VL ++++N+Y +CGSLE+A+ V
Sbjct: 145 TYATLLAGCLKQRAIDPGRMIHAHIESFYGRNMDRDNVLGSHLVNLYRRCGSLEEAKSVF 204
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
D + PD + W+A+IA A ++A+ LF M R ++PD L S+L C+
Sbjct: 205 DRL------GDPDASCWSAMIASYAQSGYGSQALELFQRMDRRGIVPDRLAFLSILSVCS 258
Query: 162 S 162
S
Sbjct: 259 S 259
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 13/140 (9%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQP-- 76
N EAL F + ++ R P +++A + CSSL L L RK+H I+S S P
Sbjct: 329 NRPREALEIFAAMMDH---RCEPDAASFASAMDACSSLGDLTLARKIHAQIISLSSNPRE 385
Query: 77 --DVVLQNYILNMYGKCGSLEDARVVSDE-MPQRNVIESPDLASWNAIIAGVASPSNANE 133
++ N + MYGKC SLE+A+ D + +N + + A+WNA+I A +
Sbjct: 386 EIQILATNAAIAMYGKCKSLEEAKTAFDRAIHAKNTVNT---ATWNAMIGAYAQNGHPGA 442
Query: 134 AMSLFSEMRDRELIPDGLTV 153
+ L+ +M+ + + PD T+
Sbjct: 443 GLELYQQMKSQGIQPDRATL 462
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 8/159 (5%)
Query: 2 IRNLKTQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQL 61
+RNL + N+Q + EA+ A + + + +++ L+ +C L
Sbjct: 3 LRNLASWNAIIAANAQ--NGCFTEAIEALESMIQLKSVTPDRMSFSVLLDSCCGSEHLAH 60
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
G K+H I D+ L N ++ MYG+CGS+E A+ V M +R DL SW A+
Sbjct: 61 GVKIHGLIFLCAIDSDLFLDNALITMYGRCGSVERAQKVFAAMEER------DLVSWTAM 114
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
IA A+ + ++ L+ M ++PD +T +LL C
Sbjct: 115 IAANAANGHFLASVLLYLRMIQEGVLPDRITYATLLAGC 153
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 29 AFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A + Q I P A L +S CSS+ LGR+ H I + + ++
Sbjct: 231 ALELFQRMDRRGIVPDRLAFLSILSVCSSI---DLGRRFHSRIAGMDRENSIA--TALIQ 285
Query: 87 MYGKCGSLEDARVVSDEM-PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
MYG+ G +E+++ V D + ++ + D+A W ++I A + EA+ +F+ M D
Sbjct: 286 MYGRLGFVEESKGVFDRLEKEQGDGDDRDVAVWTSLIQAYARNNRPREALEIFAAMMDHR 345
Query: 146 LIPDGLTVRSLLCACTS 162
PD + S + AC+S
Sbjct: 346 CEPDAASFASAMDACSS 362
Score = 43.1 bits (100), Expect = 0.044, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Query: 41 IRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I+P +T + + + +LGR V ++ + D + ++ M + G A+
Sbjct: 455 IQPDRATLVIALDAAAMIEEFELGRDV---LIDGALEYDERVATAVIGMLARSGKTIRAK 511
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V D +P+R+ I W+A++ A ++ A+ LFSEM + D + S+L
Sbjct: 512 RVFDSIPRRDGI------CWSAMVTAYAQNGHSILALELFSEMVVEGFVADKAAIVSILA 565
Query: 159 ACTSPSN 165
AC+ +
Sbjct: 566 ACSQSGD 572
>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 695
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 18/141 (12%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
L+NE L+ I P +Y + ++S+C+ L SL G+ VH + + +++
Sbjct: 309 LFNEMLLE----------HIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLL 358
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ + +++MY KCG ++DAR V + MP RNV+ SWNA+I G A + +A+ LF
Sbjct: 359 VSSALIDMYSKCGFIDDARSVFNLMPTRNVV------SWNAMIVGCAQNGHDKDALELFE 412
Query: 140 EMRDRELIPDGLTVRSLLCAC 160
M ++ PD +T +L AC
Sbjct: 413 NMLQQKFKPDNVTFIGILSAC 433
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 7/135 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
E+L F +Q F T +++ + L L+ G+++H I+ +V + N +
Sbjct: 138 ESLELFKRMQRE-GFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNAL 196
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+MY KCG +E AR + D + ++N L SWN +I+G A + + L +MR
Sbjct: 197 TDMYAKCGEIEQARWLFDCLTKKN------LVSWNLMISGYAKNGQPEKCIGLLHQMRLS 250
Query: 145 ELIPDGLTVRSLLCA 159
+PD +T+ +++ A
Sbjct: 251 GHMPDQVTMSTIIAA 265
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 72 SKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNA 131
S PD V + I+ Y +CG +++AR V E ++ D+ W A++ G A
Sbjct: 250 SGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEK------DIVCWTAMMVGYAKNGRE 303
Query: 132 NEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+A+ LF+EM + PD T+ S++ +C
Sbjct: 304 EDALLLFNEMLLEHIEPDSYTLSSVVSSCA 333
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 26/150 (17%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQP-DVVLQNYILNMYGKCGSLEDARVVSDE 103
Y L+ C + +++ H+ QP D L N +L++Y K G L DA+ + D+
Sbjct: 24 AYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDK 83
Query: 104 MPQRNVIES-------------------------PDLASWNAIIAGVASPSNANEAMSLF 138
M +R++ D S+N IAG + S E++ LF
Sbjct: 84 MLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELF 143
Query: 139 SEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
M+ P T+ S+L A S++ Y
Sbjct: 144 KRMQREGFEPTEYTIVSILNASAQLSDLRY 173
>gi|296090287|emb|CBI40106.3| unnamed protein product [Vitis vinifera]
Length = 590
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 6/138 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ + L F + TN R T+ ++ C+ L S+ G+++H H++ ++ D+ + N
Sbjct: 284 HAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGN 343
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++NMY KCG + A + +M N L SWN IIAG + A+ LF +M
Sbjct: 344 ALVNMYAKCGCIGYAYDIFSKMVHHN------LVSWNTIIAGFGNHGLGERAVELFEQMN 397
Query: 143 DRELIPDGLTVRSLLCAC 160
+ PD +T LL AC
Sbjct: 398 ASGIRPDSVTFIGLLTAC 415
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 9/122 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + L+ CS ++L+ G +H +L + +Q DV + N++LNMY KCG AR V DEM
Sbjct: 5 TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEM 64
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
++N L SW+A+I+G A+ L+S+M L+P+ S++ AC S S
Sbjct: 65 FEKN------LVSWSAMISGYDQAGEPQMAIDLYSQMF---LVPNEYVFASVISACASLS 115
Query: 165 NV 166
V
Sbjct: 116 AV 117
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+A +IS C+SL ++ LG+K+H L + + N +++MY KC DA V P
Sbjct: 104 FASVISACASLSAVTLGQKIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTP 163
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165
+ P+ S+NA+I G + F MR + LIPD +L CT+ N
Sbjct: 164 E------PNCVSYNALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTEN 217
Query: 166 V 166
+
Sbjct: 218 L 218
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+ ++ C++ +L+ G ++H + + N I+ MY + +++A
Sbjct: 205 FMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFIGNVIITMYSELNLIQEAE------K 258
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCACTS 162
+IE D+ SWN +IA + + + + +F M + + PD T S L AC
Sbjct: 259 AFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAG 316
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 82.8 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 81/141 (57%), Gaps = 7/141 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N +++A+ F LQ+ R + +IS+C+ L +L+LG + HD+++ + +++L
Sbjct: 230 NHFDKAVELFKVLQSQ-GVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLIL 288
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+++MY +CGS++ A V +++P+R D SW A+IAG+A + ++ F+
Sbjct: 289 GTALVDMYARCGSIDKAVWVFEDLPER------DTLSWTALIAGLAMHGYSERSLKYFAT 342
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M + L P +T ++L AC+
Sbjct: 343 MVEAGLTPRDITFTAVLSACS 363
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 39/165 (23%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AF F + + P T+ L+ +C+ L + +G + H HI+ + DV +QN +++
Sbjct: 103 AFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVH 162
Query: 87 MYG-------------------------------KCGSLEDARVVSDEMPQRNVIESPDL 115
MY KCG +E AR + D+MP++N L
Sbjct: 163 MYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKN------L 216
Query: 116 ASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+W+ +I+G A ++ ++A+ LF ++ + + + + S++ +C
Sbjct: 217 VTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSC 261
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I++P+L +NA+I G + N ++A + + + + L+PD LT L+ +CT
Sbjct: 79 IQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCT 130
>gi|302801269|ref|XP_002982391.1| hypothetical protein SELMODRAFT_116290 [Selaginella moellendorffii]
gi|300149983|gb|EFJ16636.1| hypothetical protein SELMODRAFT_116290 [Selaginella moellendorffii]
Length = 779
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TYA L++ CSS L G+ +H ++ D V+++++L MYGKCGSLED + S E+
Sbjct: 260 TYATLLNACSSEEDLGEGKSIHRSVVDMGLDRDEVVKSFLLGMYGKCGSLEDVKRSSCEV 319
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+RN I +WN II A S+ +A+ F +M+ + D +T +L C+SP+
Sbjct: 320 HERNTI------AWNTIIGAYARYSDHFQALRSFQQMQLEGVKADAVTFVLMLGTCSSPA 373
Query: 165 NV 166
++
Sbjct: 374 HL 375
Score = 75.1 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 45/128 (35%), Positives = 71/128 (55%), Gaps = 12/128 (9%)
Query: 41 IRPSTYACLISTCSSLRSLQL--GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
IRP+ LI+ + LR+ L GR+VH ++L + D L N +++MY K G +++A
Sbjct: 157 IRPN----LITMVAVLRACNLTDGRQVHGYVLEAGMSLDTSLGNALVDMYCKTGGVDEAD 212
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
VV EMP+R+VI SWN +I+G A + E + M+ L P +T +LL
Sbjct: 213 VVLREMPKRDVI------SWNIMISGYAQSGDCKEGLRCLWRMQQDGLSPTKVTYATLLN 266
Query: 159 ACTSPSNV 166
AC+S ++
Sbjct: 267 ACSSEEDL 274
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ TCSS L G +HD I S +++ N + MY KCGSL+ AR + +EM
Sbjct: 361 TFVLMLGTCSSPAHLAQGILLHDWI-SQLGFESIIVHNSLTAMYAKCGSLDAARKMFEEM 419
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P RN + SWN++++ +A F M+ PD +T S+L ACT +
Sbjct: 420 PSRNSV------SWNSLMSAAIQHGCHADAHKFFQRMKLEGSRPDEVTCISMLDACTKQA 473
Query: 165 N 165
N
Sbjct: 474 N 474
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 9/143 (6%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
N N+A+ A + + +RP T+ + C+ +L GRKVH HI + D+
Sbjct: 35 NSENDAVQALELYKRMQLEGVRPDSVTFVTCLKACTVEGALGDGRKVHAHIRELGLETDI 94
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN-ANEAMSL 137
N ++NMYGKC S EDA + M ESP++ SW ++I A + E++ L
Sbjct: 95 YAANALINMYGKCRSPEDAFQLFSRM------ESPNVVSWTSVIGNFAQYGHLGRESVLL 148
Query: 138 FSEMRDRELIPDGLTVRSLLCAC 160
F +M + P+ +T+ ++L AC
Sbjct: 149 FRKMELEGIRPNLITMVAVLRAC 171
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Query: 45 TYACLISTCSSLRS-LQLGRKVHDHILSS--KSQPDVVLQNYILNMYGKCGSLEDARVVS 101
TY + CS L L G+ +H ++L ++ D V ++NMYGKCGSL++AR +
Sbjct: 559 TYVAALDACSGLAGGLAHGKLIHGYMLDHGFSNRLDTVAATALVNMYGKCGSLQEARKIF 618
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
D M R+V+ +W ++I A S +A+ L M + D + S+L C
Sbjct: 619 DGMLHRDVV------TWTSLIVAYAQHSEIEQALKLVKIMEQEGVKVDDVVFLSILSGC 671
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 11/122 (9%)
Query: 42 RPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP C ++ C+ + + G +H ++ S + N ++ MY K G E AR
Sbjct: 456 RPDEVTCISMLDACTKQANAKEGSSIHQMVVESGFDKRTGVANALIFMYAKLGDHEAARN 515
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V D M +RN + SWN I+A +A+ +F +M ++ D +T + L A
Sbjct: 516 VFDAMAERNTV------SWNTILAAYVEKGLNRDAVEMFWKM---DVARDKVTYVAALDA 566
Query: 160 CT 161
C+
Sbjct: 567 CS 568
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN-ANEAMSLFSEMRDRE 145
MYGKCG L+ A V ++ +V A+W+A++ A+ N A +A+ L+ M+
Sbjct: 1 MYGKCGDLDAASEVFGKLDPLHV------AAWSALLGAYANSENDAVQALELYKRMQLEG 54
Query: 146 LIPDGLTVRSLLCACT 161
+ PD +T + L ACT
Sbjct: 55 VRPDSVTFVTCLKACT 70
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 44/116 (37%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++S C L L G+ +HD I + P V L N +L+MY +CG ++ A + EM
Sbjct: 345 TLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEM 404
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P +NVI SWNAII +A A +A+ F M PD +T +LL AC
Sbjct: 405 PSKNVI------SWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVALLSAC 454
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 25/141 (17%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T L+ CS+ +L+ G+ VH H+L + D++L N +++MYGKCG L A D M
Sbjct: 213 TLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMM 272
Query: 105 PQRNV-------------------------IESPDLASWNAIIAGVASPSNANEAMSLFS 139
P +N I + SWNA+I+ +EA+ L++
Sbjct: 273 PFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYN 332
Query: 140 EMRDRELIPDGLTVRSLLCAC 160
M+ L PD T+ ++L AC
Sbjct: 333 RMKLLGLAPDEFTLAAVLSAC 353
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T L+ C+ +++ + H ++ V + N +L+ Y GSL D+R DEM
Sbjct: 112 TLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEM 171
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
RNV+ SWN++I G A N EA SLF MR + L+ D T+ SLL AC++
Sbjct: 172 VDRNVV------SWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEG 225
Query: 165 NVLY 168
N+ +
Sbjct: 226 NLEF 229
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 8/142 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS-KSQPDVV 79
N Y EAL F +Q +N T+ ++ C+ L +L LG+ +H +I +
Sbjct: 344 NSYKEALALFRKMQQ-SNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTS 402
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
L +++MY KCG++E A+ V M ++ L SWNA+I+G+A +AN A+ LF
Sbjct: 403 LWTSLIDMYAKCGNIEAAKQVFAGMKPKS------LGSWNAMISGLAMHGHANMALELFR 456
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
+MRD PD +T +L AC+
Sbjct: 457 QMRDEGFEPDDITFVGVLSACS 478
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 7/139 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ EAL F ++ N ST ++S C+ SL+LG V I ++ L N
Sbjct: 245 FEEALAFFQEMKR-ANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVN 303
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG L+ AR + + + ++++I SWN +I G + ++ EA++LF +M+
Sbjct: 304 ALIDMYSKCGDLDKARDLFEGICEKDII------SWNVMIGGYSHMNSYKEALALFRKMQ 357
Query: 143 DRELIPDGLTVRSLLCACT 161
+ P+ +T S+L AC
Sbjct: 358 QSNVEPNDVTFVSILPACA 376
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 37/153 (24%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS----------- 93
T+ L+ +C+ + + Q G+++H H+L + D + ++NMY + G
Sbjct: 134 TFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKS 193
Query: 94 --------------------LEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
L+DAR + +E+P R+ + SWNA+IAG A E
Sbjct: 194 SLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAV------SWNAMIAGYAQSGRFEE 247
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
A++ F EM+ + P+ T+ ++L AC ++
Sbjct: 248 ALAFFQEMKRANVAPNESTMVTVLSACAQSGSL 280
>gi|297843162|ref|XP_002889462.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335304|gb|EFH65721.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 608
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 81/139 (58%), Gaps = 8/139 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+LY EAL F + ST+ +++ C +LR L+ G+++H ++++ +VV+
Sbjct: 242 DLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVV 301
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
++ +L+MYGK GS+ +AR V + MP++N++ SW+A++ G +A+ +F E
Sbjct: 302 ESSLLDMYGKSGSVREARQVFNGMPRKNIV------SWSALLGGYCQNGEHEKAIEMFRE 355
Query: 141 MRDRELIPDGLTVRSLLCA 159
M +++L G +++ CA
Sbjct: 356 MEEKDLYCFGTVLKA--CA 372
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 68/115 (59%), Gaps = 6/115 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+ ++ C+ L +++LG+++H + +V++++ ++++YGK G ++ A V +M
Sbjct: 364 FGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDYASRVYSKMS 423
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
RN+I +WNA+++ +A EA+S F++M + + PD ++ ++L AC
Sbjct: 424 VRNMI------TWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAVLTAC 472
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 9/139 (6%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
E + A + +F ++P+ T + + C L ++LGR H +++ + + V+ +
Sbjct: 142 EHVKALEVFVEMVSFGLQPNKFTLSSAVKACFELGEVRLGRCFHGVVITHGFEWNHVISS 201
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM- 141
+ MYG DAR V DEMP+ PD+ W A+++ + EA+ LF M
Sbjct: 202 TLAYMYGVNKEPVDARRVFDEMPE------PDVICWTAVLSAFSKNDLYEEALGLFYAMH 255
Query: 142 RDRELIPDGLTVRSLLCAC 160
R + L+PDG T ++L AC
Sbjct: 256 RGKGLVPDGSTFGTVLTAC 274
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
Query: 35 NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG-S 93
+++ + + YA L+ TC + S G + H H++ S + D + N +L++Y K G
Sbjct: 52 HSSEISAKSNLYASLLQTCRKVFSFIHGLQFHAHVVKSGLETDRNVGNSLLSLYFKLGPD 111
Query: 94 LEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTV 153
+ + R V D M ++ I SW ++++G + +A+ +F EM L P+ T+
Sbjct: 112 MRETRRVFDGMFVKDAI------SWTSMMSGYVASKEHVKALEVFVEMVSFGLQPNKFTL 165
Query: 154 RSLLCAC 160
S + AC
Sbjct: 166 SSAVKAC 172
>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
Length = 485
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 80/146 (54%), Gaps = 11/146 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+ E+L F +Q + +I P T ++S C+ +L G+ +H I + D+VL
Sbjct: 93 FQESLALFRKMQLH---KIEPDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVL 149
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ +++MY KCGS++ A V M RNV +WNA+I G+A + +A+SLF +
Sbjct: 150 ETALVDMYAKCGSIDLALQVFRRMRVRNVF------TWNAMIGGLAMHGHGEDAISLFDQ 203
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M +L+PD +T +LLCAC+ V
Sbjct: 204 MEXDKLMPDDVTFIALLCACSHAGLV 229
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 6/124 (4%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
N R T L+ C+ L +L+ G+ +H + ++ + N IL+MY KC +E A
Sbjct: 6 NLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESA 65
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+ V N I D+ SW ++++G+A E+++LF +M+ ++ PD +T+ +L
Sbjct: 66 QEVF------NRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVL 119
Query: 158 CACT 161
AC
Sbjct: 120 SACA 123
>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
Length = 742
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 15/143 (10%)
Query: 31 DFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY 88
D +Q ++RP TY L+S CSS + LGR +H I++ + + +V++ N +++MY
Sbjct: 246 DAIQLYQRMQLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMY 305
Query: 89 GKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE--- 145
KCGS +AR V D+M QR++I SW II+ EA LF +M + E
Sbjct: 306 AKCGSHTEARAVFDKMEQRSII------SWTTIISAYVRRRLVAEACHLFQQMLELEKNG 359
Query: 146 ----LIPDGLTVRSLLCACTSPS 164
+ PD L ++L AC S
Sbjct: 360 SSQRVKPDALAFVTILNACADVS 382
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 71/130 (54%), Gaps = 7/130 (5%)
Query: 34 QNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91
+N ++ R++P A +++ C+ + +L+ G+ V + S D + ++N+YGKC
Sbjct: 357 KNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKC 416
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL 151
G +E+AR + D + R PD+ WNA+IA A ++EA+ LF M + PD
Sbjct: 417 GEIEEARRIFDAVCSR-----PDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSF 471
Query: 152 TVRSLLCACT 161
+ S+L AC+
Sbjct: 472 SFVSILLACS 481
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 8/142 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F F+ + S ++S CSS +Q GR +H I S + ++++ N +
Sbjct: 143 EALRHFRFMLL-LGIKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFESELLVANAV 201
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+ MYG+CG++E+AR V D M + D+ SWN +++ +A+ L+ M+ R
Sbjct: 202 MTMYGRCGAVEEARKVFDAMDE----ALRDVVSWNIMLSTYVHNDRGKDAIQLYQRMQLR 257
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
PD +T SLL AC+S +V
Sbjct: 258 ---PDKVTYVSLLSACSSAEDV 276
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 9/129 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP T+ + +C SL+ G ++H ++ S+ + D + N +LNMY KCGSL A+
Sbjct: 54 VRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAK 113
Query: 99 VVSDEMPQ-RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
V +M + RNVI SW+ + A N EA+ F M + + ++L
Sbjct: 114 RVFAKMERTRNVI------SWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTIL 167
Query: 158 CACTSPSNV 166
AC+SP+ V
Sbjct: 168 SACSSPALV 176
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY C S DA+ D + QRN L SW ++A A + E + MR +
Sbjct: 1 MYAHCDSPGDAKAAFDALEQRN------LYSWTGLVAAFAISGQSKETLRALERMRQDGV 54
Query: 147 IPDGLTVRSLLCACTSPSNV 166
PD +T + L +C P ++
Sbjct: 55 RPDAVTFITALGSCGDPESL 74
>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
Length = 861
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TYA ++ TC++L S LG+++H ++ + Q DV + + +++MY KCG L D+R++ ++
Sbjct: 563 TYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKS 622
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+R D +WNA+I G A EA+ LF M + P+ +T S+L AC
Sbjct: 623 LRR------DFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACA 673
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 52 TCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIE 111
C+ ++ L G +++ + S DV + N ++MYGKC +L +A V DEM +R
Sbjct: 349 ACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRR---- 404
Query: 112 SPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
D SWNAIIA E + LF M + PD T S+L ACT S
Sbjct: 405 --DAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTGGS 455
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 75/141 (53%), Gaps = 7/141 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
NL + AL F +Q N + S YA ++ +C++L L+LG ++H H L S D ++
Sbjct: 218 NLLSLALKFFKEMQK-VNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIV 276
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ L+MY KC +++DA+++ D E+ + S+NA+I G + + +A+ LF
Sbjct: 277 RTATLDMYAKCDNMQDAQILFDNS------ENLNRQSYNAMITGYSQEEHGFKALLLFHR 330
Query: 141 MRDRELIPDGLTVRSLLCACT 161
+ L D +++ + AC
Sbjct: 331 LMSSGLGFDEISLSGVFRACA 351
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
RI P T+ ++ C+ SL G ++H I+ S + + +++MY KCG +E+A
Sbjct: 436 RIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEA 494
Query: 98 RVVSDEMPQR-NVIESPD-------------LASWNAIIAGVASPSNANEAMSLFSEMRD 143
+ QR NV + + SWN+II+G + +A LF+ M +
Sbjct: 495 EKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMME 554
Query: 144 RELIPDGLTVRSLLCACT 161
+ PD T ++L C
Sbjct: 555 MGITPDKFTYATVLDTCA 572
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 20/145 (13%)
Query: 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFR--------------IRPSTYACLISTCSSLR 57
+F+N P++++ + + +LQN + + T+A ++ CS L
Sbjct: 93 SFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLE 152
Query: 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
LG ++H ++ DVV + +L+MY K ++ V +P++N + S
Sbjct: 153 DTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSV------S 206
Query: 118 WNAIIAGVASPSNANEAMSLFSEMR 142
W+AIIAG + + A+ F EM+
Sbjct: 207 WSAIIAGCVQNNLLSLALKFFKEMQ 231
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 53 CSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIES 112
C+ +L+LG++ H H++ S +P + N +L +Y A +V D+MP R+V+
Sbjct: 16 CAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVV-- 73
Query: 113 PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
SWN +I G + ++ +A S F+ M R+++
Sbjct: 74 ----SWNKMINGYSKSNDMFKANSFFNMMPVRDVV 104
>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 77/141 (54%), Gaps = 5/141 (3%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+Y +AL F ++ + R T A + S C+ L +L++G ++ + + ++ +
Sbjct: 121 GMYTKALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGERIESYARDNGLMKNLYV 180
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +L MY +CG ++ AR V +E+ +R +L SWN+++ G+A +NEA+ L+ +
Sbjct: 181 SNTLLEMYARCGKIDAARHVFNEIGKRR-----NLCSWNSMMMGLAVHGRSNEALQLYDQ 235
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M + PD +T L+ ACT
Sbjct: 236 MLGEGIEPDDVTFVGLILACT 256
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L C+S SL G+ +H H + S DV +++MY K G L AR V DEM
Sbjct: 12 TFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGVLMLARQVFDEM 71
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
R D+ +WN++IAG + + A+ LF M R ++
Sbjct: 72 TVR------DIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVV 108
>gi|449521058|ref|XP_004167548.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 376
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 8/143 (5%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPS-TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
I L E + F L T + + S T A ++ C+ + + G +VH H+L
Sbjct: 68 IHTLSKEPIFLFKKL-TETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFGSS 126
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ +Q ++N YGKC + AR V +EMP RN L +W A+I+G A +EAM L
Sbjct: 127 LFVQTSLVNFYGKCEEIGFARKVFEEMPVRN------LVAWTAMISGHARVGAVDEAMEL 180
Query: 138 FSEMRDRELIPDGLTVRSLLCAC 160
F EM+ + PD +T+ S++ AC
Sbjct: 181 FREMQKAGIQPDAMTLVSVVSAC 203
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 11/139 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+EA+ F +Q I+P T ++S C+ +L +G +H +I D+ L
Sbjct: 175 DEAMELFREMQKAG---IQPDAMTLVSVVSACAVAGALDIGCWLHAYIEKYFVLTDLELS 231
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+++MY KCG +E A+ V MP + D +W+++I G A A +A+ F +M
Sbjct: 232 TALVDMYAKCGCIERAKQVFVHMPVK------DTTAWSSMIMGFAYHGLAQDAIDAFQQM 285
Query: 142 RDRELIPDGLTVRSLLCAC 160
+ E+ PD +T ++L AC
Sbjct: 286 LETEVTPDHVTFLAVLSAC 304
>gi|302762633|ref|XP_002964738.1| hypothetical protein SELMODRAFT_583 [Selaginella moellendorffii]
gi|300166971|gb|EFJ33576.1| hypothetical protein SELMODRAFT_583 [Selaginella moellendorffii]
Length = 644
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 75/122 (61%), Gaps = 7/122 (5%)
Query: 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
RP T+ +++ SSL SL+ G+ VHD ++ + + DVV+Q ++NMYGKCGS+ +A V
Sbjct: 197 RP-TFLTVLAAISSLESLRHGKLVHDTLVEAGHEDDVVVQTALVNMYGKCGSVVEAVEVF 255
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
D MP+ +VI W+A+I+ + + E++ LF +M+ P+ +T+ S+L AC
Sbjct: 256 DRMPRHDVI------LWSAVISAHVNCAEYEESLRLFRKMQLEGNRPNNVTLVSVLSACE 309
Query: 162 SP 163
P
Sbjct: 310 GP 311
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 31/168 (18%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y E+L F +Q N RP+ T ++S C ++L+ G+ +H+ ++ + + D+++
Sbjct: 279 YEESLRLFRKMQLEGN---RPNNVTLVSVLSACEGPQALETGKGIHECVVEAGYEGDLIV 335
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVI--------------------------ESPD 114
N I++MYGKCGSLEDA V +P+RN + D
Sbjct: 336 GNAIVSMYGKCGSLEDAWDVFHRVPRRNGVPIGNALISMYGRCGSFGKARDLFDSMAERD 395
Query: 115 LASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+WN +++ + +++ LF +M PD +T+ ++L C S
Sbjct: 396 AVTWNTMMSVSEQLEHGRDSIQLFRQMLQEGTPPDKVTILTVLNVCAS 443
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+ CS + L GR++H I S + D V+ N+++ MY KCGSL DA V ++ + +
Sbjct: 1 LLRQCSRSKDLARGRQIHASIARSSAPQDPVVGNWLIQMYLKCGSLIDASQVFYQLLETS 60
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
V+ +L +W A+IA A A+ LF +M+ PD +T+ ++ AC +P N+
Sbjct: 61 VV---NLVAWTALIAAYARNGQTKLAIRLFQQMQLEGNSPDRITLVTIFEACGNPENL 115
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T +++ C+SL +LQ G+ + + + + ++ N ILNMY KCGS ++AR +
Sbjct: 433 TILTVLNVCASLPALQEGKAICAWLDHTPLSANQMIGNAILNMYAKCGSRDEARRIF--- 489
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+V++ D SWNA+I S S A +F M+ PD +T ++L C+
Sbjct: 490 ---SVMQGRDAVSWNALIGAYGSYSRGRYAFQIFQAMQLEGSTPDAVTFTTILSVCS 543
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 12/130 (9%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
L+ N+ RI T + C + +L+ G+K+H + LS S DVVL + ++ MYGKCG
Sbjct: 92 LEGNSPDRI---TLVTIFEACGNPENLEDGKKIHAY-LSCNS--DVVLGSSLITMYGKCG 145
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
SL +A ++ M + N + +WN+++ AM L+ EM +P T
Sbjct: 146 SLSEACLMFQSMEEWNTV------AWNSLMGAFVQHDRVEAAMELYWEMLQCGFLPSRPT 199
Query: 153 VRSLLCACTS 162
++L A +S
Sbjct: 200 FLTVLAAISS 209
>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Glycine max]
Length = 986
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 73/129 (56%), Gaps = 9/129 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSS-KSQPDVVLQNYILNMYGKCGSLEDA 97
I+P+ T +C + C+ L +L+ GR+VH ++L + + + N +++MY K G ++ A
Sbjct: 609 IKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTA 668
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
++V D MPQRN + SW +++ G +A+ +F EMR L+PDG+T +L
Sbjct: 669 QIVFDNMPQRNAV------SWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVL 722
Query: 158 CACTSPSNV 166
AC+ V
Sbjct: 723 YACSHSGMV 731
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ + C++L SL LG +H + S +V + N +++MYGKCG+L A + D++
Sbjct: 261 TFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDL 320
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCACTS 162
R + DL SWN++++ S+AN A++LF +M R L+ PD +++ ++L AC S
Sbjct: 321 CHRGI---QDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACAS 376
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 29/149 (19%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ C+SL + GR+VH + S DV + N +++MY KCG +E+A V M ++
Sbjct: 370 ILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKD 429
Query: 109 VIE-----------------------------SPDLASWNAIIAGVASPSNANEAMSLFS 139
V+ D+ +W A+I G A EA+ +F
Sbjct: 430 VVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFR 489
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNVLY 168
+M D P+ +T+ SLL AC S +L+
Sbjct: 490 QMCDCGSRPNVVTLVSLLSACVSVGALLH 518
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 16/145 (11%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILS--------SKSQPDV 78
A D + + RP+ T L+S C S+ +L G++ H + + D+
Sbjct: 484 ALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDL 543
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N +++MY KC S E AR + D + ++ D+ +W +I G A +AN A+ LF
Sbjct: 544 KVINGLIDMYAKCQSTEVARKMFDSVSPKD----RDVVTWTVMIGGYAQHGDANNALQLF 599
Query: 139 SEM--RDRELIPDGLTVRSLLCACT 161
S M D+ + P+ T+ L AC
Sbjct: 600 SGMFKMDKSIKPNDFTLSCALVACA 624
>gi|255536907|ref|XP_002509520.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549419|gb|EEF50907.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 413
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 75/137 (54%), Gaps = 7/137 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
NEALV F+ + F T A ++S C+ SL LG ++H ++ + V+L
Sbjct: 231 NEALVLFERMVAE-GFEPNGPTIASVLSVCARSGSLDLGERIHGFMIERGVEIGVILGTA 289
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+++MY K G + AR + D M ++NV A+WNA++ G+AS +A EA+SLF ++
Sbjct: 290 LVHMYAKNGKILVARKLFDSMTEKNV------ATWNAMLCGLASHGHAEEALSLFWKLEK 343
Query: 144 RELIPDGLTVRSLLCAC 160
++P T +L AC
Sbjct: 344 EHIVPIDATFVGVLSAC 360
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 7/116 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ CS S+Q +++H H+L S D+ + N ++ +Y L DA + E
Sbjct: 151 TFPFLLKGCS-FCSIQSCKQIHTHVLKFGSDLDLHVVNRLVRVYSIFSDLTDAWKLFGEF 209
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P+R DL+ W +I+G A ANEA+ LF M P+G T+ S+L C
Sbjct: 210 PER------DLSIWTTMISGYAQNFCANEALVLFERMVAEGFEPNGPTIASVLSVC 259
>gi|302787038|ref|XP_002975289.1| hypothetical protein SELMODRAFT_10002 [Selaginella moellendorffii]
gi|300156863|gb|EFJ23490.1| hypothetical protein SELMODRAFT_10002 [Selaginella moellendorffii]
Length = 730
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 70/123 (56%), Gaps = 8/123 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP+ T+ + CSS L+ G+K+H I++ + + ++ L N +++MY CGSL DA+
Sbjct: 75 VRPNCVTFINTLGACSSAEFLETGKKIHAQIVAGEVELELNLANSLISMYSNCGSLVDAK 134
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
D M +RNV+ SWN IIA + + EA+ LF EM + PD ++ S+
Sbjct: 135 RFFDGMNRRNVV------SWNCIIAAFSGHGHYREAVDLFYEMEKQGFKPDRVSFVSVFS 188
Query: 159 ACT 161
AC+
Sbjct: 189 ACS 191
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 10/138 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y EA+ F + F+ ++ + S CS L L GR++H + + DV + N
Sbjct: 161 YREAVDLF-YEMEKQGFKPDRVSFVSVFSACSILEDLSQGRRIHARFCDGRMKLDVSIGN 219
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+LNMY +CGSL+DAR+V D + RN++ SW ++IA A ++A +F +M
Sbjct: 220 TLLNMYARCGSLDDARLVFDSITSRNIV------SWTSMIAAYAQFDRFHDAYEVFQKM- 272
Query: 143 DRELIPDGLTVRSLLCAC 160
+ P+ +T ++L AC
Sbjct: 273 --GVAPNEVTFITILGAC 288
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 28/145 (19%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++S C+ L S + R +H I+S D V+ N ++NM+GKCG LEDAR + + M
Sbjct: 385 TFGTVLSACADLGSTREARYLHGLIVSGGYDRDTVVCNGLINMFGKCGMLEDARAIFERM 444
Query: 105 PQRNV----------------------------IESPDLASWNAIIAGVASPSNANEAMS 136
RN+ I D+ +W ++A A A+EA+
Sbjct: 445 RSRNLVTWTGMLGAYIQQQEIRQAVSLFQQMERISYKDVMAWTTMVAAYAQAGYADEALK 504
Query: 137 LFSEMRDRELIPDGLTVRSLLCACT 161
L++ M + PD +T +LL AC+
Sbjct: 505 LYARMGLEGVAPDEITFVNLLHACS 529
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 10/120 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSK--SQPDVVLQNYILNMYGKCGSLEDARVVSD 102
T+ ++ C+ R+L+ R++H +L+S + + + N ++N Y KCGSL DA+ V +
Sbjct: 280 TFITILGACAEARALKQAREIHSLVLTSGILEKQQLTVGNGLINTYAKCGSLSDAKTVFE 339
Query: 103 EM--PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
M +RNV+ +W +IIA + EA++LF M + + +T ++L AC
Sbjct: 340 SMATAERNVV------TWTSIIAACGLCGHPREALALFHRMELEGIPANEITFGTVLSAC 393
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ CS + + + G + HIL VL N ++ YG CG+ A++V + +
Sbjct: 520 TFVNLLHACSRMGAKKEGWTIRSHILERGLPSSRVLGNGLVCFYGACGTWLQAKMVFENL 579
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+R D A+WNA I +E++ LF M + PD +T ++L +C+
Sbjct: 580 AER------DSAAWNAAIGVSGQHGFYDESLRLFERMVLEGMEPDEITFTNVLFSCSHSG 633
Query: 165 NV 166
+
Sbjct: 634 EI 635
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
R++H + + + +L N ++ MYGKCG+L +AR D + ++NV SW+ II
Sbjct: 1 RRIHSELARTGIDSETLLGNTLVQMYGKCGNLAEARAAFDGIAEKNVF------SWSIII 54
Query: 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ + EA+ LF M R P+ +T + L AC+S
Sbjct: 55 GLYSRHRLSREAIELFHAMDVR---PNCVTFINTLGACSS 91
>gi|297843412|ref|XP_002889587.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335429|gb|EFH65846.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 558
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 78/143 (54%), Gaps = 8/143 (5%)
Query: 26 ALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
A+ A D + I P+ T A ++ +CSSL SL+ G+ VH +++ + + D V
Sbjct: 293 AVEAIDLFRQMLGESILPNHCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTS 352
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++ Y +CG+++ AR V D MP+RNVI SW+++I EA+ F M+
Sbjct: 353 FIDTYARCGNIQMARKVFDMMPKRNVI------SWSSMINAFGINGLFEEALDCFDNMKS 406
Query: 144 RELIPDGLTVRSLLCACTSPSNV 166
+ L+P+ +T SLL AC+ NV
Sbjct: 407 QNLVPNSVTFVSLLSACSHSGNV 429
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 7/132 (5%)
Query: 32 FLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHD-HILSSKSQPDVVLQNYILNMYGK 90
+L +T + T CL+ C ++ + + G+ VH I S L+ I++MY K
Sbjct: 199 YLMRDTGLALDALTLICLVKACGNVSAGKEGKCVHGLSIRRSFIDQSGYLEASIIDMYVK 258
Query: 91 CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDG 150
C L++AR + + +RNV+ W +I+G A A EA+ LF +M ++P+
Sbjct: 259 CRLLDNARKLFETSVERNVV------MWTTLISGFAKCERAVEAIDLFRQMLGESILPNH 312
Query: 151 LTVRSLLCACTS 162
T+ ++L +C+S
Sbjct: 313 CTLAAILVSCSS 324
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
I C L L+ G +H + + D + ++ MY + G++E A+ V DEMP RN
Sbjct: 116 IKACVGLGLLENGMLIHGLAMKNGLDKDDYVAPSLVEMYAQFGTMESAQKVFDEMPVRNS 175
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+ W ++ G S +E LF MRD L D LT+ L+ AC + S
Sbjct: 176 V------LWGVLMKGYLKYSKDSEVFRLFYLMRDTGLALDALTLICLVKACGNVS 224
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 44/140 (31%), Positives = 81/140 (57%), Gaps = 11/140 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y EAL F+ +Q IRP + + +++ C++L +L GR +H ++ ++ + D VL
Sbjct: 274 YKEALEVFNVMQRE---EIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVL 330
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+++MY KCG L+ A V ++M ++ V +WNA+I G+ A +A+ LF +
Sbjct: 331 GTALVDMYAKCGRLDMAWDVFEKMEKKEVF------TWNAMICGLGMHGRAEDAIELFFK 384
Query: 141 MRDRELIPDGLTVRSLLCAC 160
M+ ++ P+G+T+ +L AC
Sbjct: 385 MQKQKFRPNGITLLGVLSAC 404
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 27/133 (20%)
Query: 42 RPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP+ TY L C++ + + G +VH H++ DV +++ + MYG G +E AR
Sbjct: 127 RPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARR 186
Query: 100 VSDEMPQRNVI-------------------------ESPDLASWNAIIAGVASPSNANEA 134
+ E +VI E ++ SWN +++G+A EA
Sbjct: 187 MLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEA 246
Query: 135 MSLFSEMRDRELI 147
LF+EM+++ I
Sbjct: 247 RELFNEMKEKNEI 259
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N +++ KCG +E+AR + +EM ++N I SW+A+I G EA+ +F+ M
Sbjct: 231 NVMVSGMAKCGMIEEARELFNEMKEKNEI------SWSAMIDGYIKGGYYKEALEVFNVM 284
Query: 142 RDRELIPDGLTVRSLLCACTS 162
+ E+ P + S+L AC +
Sbjct: 285 QREEIRPRKFVLSSVLAACAN 305
>gi|297796453|ref|XP_002866111.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311946|gb|EFH42370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 829
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 13/144 (9%)
Query: 26 ALVAF-DFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
AL+ F + L+N I P + + C +L+ + GR VH +++ + + V + +
Sbjct: 157 ALMGFVEMLEN----EIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGLEDCVFVAS 212
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+ +MYGKCG L+DAR V DE+P+RNV+ +WNA++ G EA+ LFS+MR
Sbjct: 213 SLADMYGKCGVLDDARKVFDEIPERNVV------AWNALMVGYVQNGMNEEAIRLFSDMR 266
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
+ P +TV + L A + V
Sbjct: 267 KEGVEPTRVTVSTCLSASANMGGV 290
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A L+S + ++L+LG++V + + + D+VL + +++MY KCGS+ DA+ V D
Sbjct: 377 TLATLMSAAARTQNLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDST 436
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
++ DL WN ++A A + E + LF M+ + P+ +T
Sbjct: 437 AEK------DLILWNTLLAAYAESGLSGEGLRLFYGMQLEGVPPNVIT 478
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 9/149 (6%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS-KSQPD 77
+QN +E + F + R + +S C++L SL GR +H +I+ + +
Sbjct: 522 VQNGCSEEAILFLRKMQESGLRPNAVSITVALSACANLASLHFGRSIHGYIIRNLQHSSS 581
Query: 78 VVLQNYILNMYGKCGSLEDA-RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
V ++ +++MY KCG + A +V ++ +L +NA+I+ A N EA++
Sbjct: 582 VSIETSLVDMYAKCGDINKAEKVFGSKL-------YSELPLYNAMISAYALYGNLKEAIA 634
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPSN 165
L+ + L PD +T+ ++L AC +
Sbjct: 635 LYRSLEGVGLKPDNITITNVLSACNHAGD 663
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLE 95
N RI P Y ++ C R L G+++H IL + + ++ ++ Y KC +L+
Sbjct: 65 NLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNGDFYAKNEYIETKLVIFYAKCDALD 124
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
A V+ ++ RNV SW AII A+ F EM + E+ PD V +
Sbjct: 125 IAEVLFTKLRVRNVF------SWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPN 178
Query: 156 LLCACTS 162
+ AC +
Sbjct: 179 VCKACGA 185
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 8/149 (5%)
Query: 19 IQNLYNE-ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+QN NE A+ F ++ R + CL S +++ ++ G++ H + + + D
Sbjct: 250 VQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCL-SASANMGGVEEGKQSHAIAIVNGLELD 308
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+L +LN Y K G +E A +V D M ++V+ +WN II+G A+ +
Sbjct: 309 NILGTSLLNFYCKVGLIEYAEMVFDRMIDKDVV------TWNLIISGYVQQGLVENAIYM 362
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNV 166
MR +L D +T+ +L+ A N+
Sbjct: 363 CQLMRLEKLKYDCVTLATLMSAAARTQNL 391
Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
P+V+ N I+ + G +++A+ + +M + P+L SW ++ G+ + EA+
Sbjct: 474 PNVITWNLIILSLLRNGEVDEAKDMFLQMQSSGIF--PNLISWTTMMNGMVQNGCSEEAI 531
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACT 161
+M++ L P+ +++ L AC
Sbjct: 532 LFLRKMQESGLRPNAVSITVALSACA 557
>gi|18398422|ref|NP_564401.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806407|sp|P0C7R0.1|PPR69_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g32415, mitochondrial; Flags: Precursor
gi|332193363|gb|AEE31484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 761
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 90/161 (55%), Gaps = 14/161 (8%)
Query: 6 KTQLRFTFYNSQPIQN-LYNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLG 62
K + +T S +QN L+ EA L + ++P STY+ L+S+ + +L G
Sbjct: 429 KDGVTWTVMISGLVQNELFAEAA---SLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQG 485
Query: 63 RKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNA 120
+ +H I + + PD++LQN +++MY KCG++EDA + +M Q+ D SWN+
Sbjct: 486 KHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQK------DTVSWNS 539
Query: 121 IIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+I G++ A++A++LF EM D P+ +T +L AC+
Sbjct: 540 MIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSACS 580
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 56 LRSLQLGRKVH-----DHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI 110
LR L G VH D I S VV +L+ Y K G L++ARV+ + MP+RN++
Sbjct: 50 LRRLSEGGLVHARHLLDKIPQRGSINRVVYWTSLLSKYAKTGYLDEARVLFEVMPERNIV 109
Query: 111 ESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
NA++ G NEA +LF EM
Sbjct: 110 TC------NAMLTGYVKCRRMNEAWTLFREM 134
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+ S+ +VV ++ Y + G + +A + EMP+RN++ SW A+I+G A
Sbjct: 222 LFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIV------SWTAMISGFAWN 275
Query: 129 SNANEAMSLFSEM-RDRELI-PDGLTVRSLLCAC 160
EA+ LF EM +D + + P+G T+ SL AC
Sbjct: 276 ELYREALMLFLEMKKDVDAVSPNGETLISLAYAC 309
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+ +VV N ++ + G +E A+ V D MP R+V+ SWNA+I G EA
Sbjct: 166 ERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVV------SWNAMIKGYIENDGMEEA 219
Query: 135 MSLFSEMRDRELI 147
LF +M ++ ++
Sbjct: 220 KLLFGDMSEKNVV 232
>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Vitis vinifera]
Length = 877
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TYA ++ TC++L +++LG+++H I+ + Q D + + +++MY KCG+++D +++ ++
Sbjct: 580 TYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKA 639
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P R D +WNA++ G A EA+ +F M+ + P+ T ++L AC
Sbjct: 640 PNR------DFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRAC 689
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 54/163 (33%), Positives = 76/163 (46%), Gaps = 22/163 (13%)
Query: 13 FYNSQPIQNL--YN-------------EALVAFDFLQNNTNFRIRPSTYACLISTCSSLR 57
+NS P NL YN EAL F LQ + + + + C+ ++
Sbjct: 332 LFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQK-SGLGLDEVSLSGAFRACAVIK 390
Query: 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
G +VH + S Q ++ + N IL+MYGKCG+L +A +V +EM R D S
Sbjct: 391 GDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSR------DAVS 444
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
WNAIIA N + +SLF M + PD T S+L AC
Sbjct: 445 WNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKAC 487
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY ++ C+ ++L G ++H+ I+ S+ D + +++MY KCG +E A + D +
Sbjct: 479 TYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRL 538
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
++ V+ SWNAII+G + + EA FS+M + + PD T ++L C +
Sbjct: 539 AEQTVV------SWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCAN 590
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 20/169 (11%)
Query: 6 KTQLRFTFYNSQPIQNLYNEALVAFDFLQNN--------------TNFRIRPSTYACLIS 51
K F++S P +N + + + +QN+ + ST+A +
Sbjct: 224 KLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFR 283
Query: 52 TCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIE 111
+C+ L +L+LG ++H H L + DVV+ L+MY KC +L DA+ + + +P N
Sbjct: 284 SCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHN--- 340
Query: 112 SPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
L S+NAII G A EA+ +F ++ L D +++ AC
Sbjct: 341 ---LQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRAC 386
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 12/137 (8%)
Query: 11 FTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHIL 70
F F + P + L + F Q + T++ + CS ++L G++ H ++
Sbjct: 16 FNFQSKSPFKTL---PISPFSSYQATPT---KKKTFSHIFQECSDRKALCPGKQAHARMI 69
Query: 71 SSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN 130
++ +P V + N ++ MY KC LE A V D MPQR D SWNA++ G A +
Sbjct: 70 LTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQR------DTVSWNAMLFGYAGRGD 123
Query: 131 ANEAMSLFSEMRDRELI 147
A LF M +R+++
Sbjct: 124 IGVAQKLFDAMPERDVV 140
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T+A ++ +CSSL G ++H + DVV + +L+MY KC L+ +
Sbjct: 175 TTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHS 234
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
MP++N + SW+AIIAG + + LF EM+ + T S+ +C
Sbjct: 235 MPEKNWV------SWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGL 288
Query: 164 S 164
S
Sbjct: 289 S 289
>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 670
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 69/114 (60%), Gaps = 7/114 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+S CS L +L GR++H +I + D+ L++ +++MY KCG ++ A + M +
Sbjct: 431 LLSACSQLGALDKGREIHSYIKEKSVRTDMWLESALVDMYAKCGCIDAAAEIFSRMRHKQ 490
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSE-MRDRELIPDGLTVRSLLCACT 161
+ +WNA+I G+AS EA++LF + ++ R+ PD +T++ +LCACT
Sbjct: 491 TL------AWNAMIGGLASQGQGKEAVALFEQLLKLRDPKPDAITLKVVLCACT 538
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ST + L LQ GR +H++I + D++LQN ++NMY KCG + A ++ + M
Sbjct: 326 TLVSVLSTYAQLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENM 385
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+R D+ SW A++ G A +LF +M+ R+++ + + SLL AC+
Sbjct: 386 ARR------DIVSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACS 436
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T L+S C +R++ G V+ + + DV ++N ++ MY KCG + DA M
Sbjct: 225 TIISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMSDAWKTFKGM 284
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
P RN SWN +I G EA+++F EM +IPD +T+ S+L
Sbjct: 285 PIRNT------KSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVL 331
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 54 SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESP 113
+S + G VH + D+ + + ++N YG S+EDAR V +EM +R+V+
Sbjct: 133 ASWKGRATGDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHERDVV--- 189
Query: 114 DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
SW +I+ A + + EM+ P+ +T+ SLL AC
Sbjct: 190 ---SWTLMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSAC 233
>gi|302781981|ref|XP_002972764.1| hypothetical protein SELMODRAFT_173093 [Selaginella moellendorffii]
gi|300159365|gb|EFJ25985.1| hypothetical protein SELMODRAFT_173093 [Selaginella moellendorffii]
Length = 535
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 8/136 (5%)
Query: 32 FLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91
L N+ + I TYA L+ C R+L G+ +H HI S P + L N++L MY KC
Sbjct: 4 LLHNHASIDIH--TYATLLQQCGERRALGDGKALHAHIASRLPNPPLFLSNHLLGMYAKC 61
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL 151
GS DA D M RNV+ SW I+ A + A+ LF M + P+ +
Sbjct: 62 GSARDALAAFDSMRDRNVV------SWTTIVTAFAHAGHPTAALRLFQRMLAEGIAPNKV 115
Query: 152 TVRSLLCACTSPSNVL 167
T ++L AC+ +L
Sbjct: 116 TFVAVLHACSDSRELL 131
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 7/119 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQR 107
LI+ C+ L L GR++H I S +S + DV L N ++NMY KCGS+E+A V D M R
Sbjct: 328 LINACARLTDLSQGRRLHARISSDESIKVDVQLGNALVNMYSKCGSVEEAARVFDGMKYR 387
Query: 108 NVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+ + SWN +I+ A ++++ + +F M+ + PD ++ +L AC + V
Sbjct: 388 STV------SWNTMISAYAVAGHSDKVLWMFHRMQQDGVEPDEVSFVGVLSACNAAGTV 440
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 7/121 (5%)
Query: 45 TYACLISTCSSLRSL-QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T+ ++ CS R L GR +H S D + + NMYGKCG ++ A + DE
Sbjct: 116 TFVAVLHACSDSRELLDPGRMIHRCCEESGLTRDRSVAISLANMYGKCGDVDTAASMLDE 175
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
M Q PD+ +W+A+I G A +++A+ LF M+ +I + +T+ + L ACT+
Sbjct: 176 MFQ------PDVIAWSAVITGFAQQGRSSDALHLFRRMQHEGVIANKITLVATLSACTNS 229
Query: 164 S 164
S
Sbjct: 230 S 230
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T +S C++ +L G+ +H I K + DV++ ++ MY CGSL+DAR+
Sbjct: 218 TLVATLSACTNSSALADGKFLHSLIAEKKLESDVIVGGALVTMYTNCGSLDDARLAF--- 274
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR-----DRELIPDGLTVRSLLCA 159
+ P++ +W A+I+ +EA+ +F + DREL+ DG+ L+ A
Sbjct: 275 ---GAVRRPNVIAWTAMISACVHFGELDEALQIFRLIEAQCLDDRELLLDGIVFVPLINA 331
Query: 160 C 160
C
Sbjct: 332 C 332
>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
Length = 814
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TYA ++ TC++L +++LG+++H I+ + Q D + + +++MY KCG+++D +++ ++
Sbjct: 517 TYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKA 576
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P R D +WNA++ G A EA+ +F M+ + P+ T ++L AC
Sbjct: 577 PNR------DFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRAC 626
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY ++ C+ ++L G ++H+ I+ S+ D + +++MY KCG +E A + D +
Sbjct: 416 TYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRL 475
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
++ V+ SWNAII+G + + EA FS+M + + PD T ++L C +
Sbjct: 476 AEQTVV------SWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCAN 527
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 54/163 (33%), Positives = 76/163 (46%), Gaps = 22/163 (13%)
Query: 13 FYNSQPIQNL--YN-------------EALVAFDFLQNNTNFRIRPSTYACLISTCSSLR 57
+NS P NL YN EAL F LQ + + + + C+ ++
Sbjct: 269 LFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQK-SGLGLDEVSLSGAXRACAVIK 327
Query: 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
G +VH + S Q ++ + N IL+MYGKCG+L +A +V +EM R D S
Sbjct: 328 GDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSR------DAVS 381
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
WNAIIA N + +SLF M + PD T S+L AC
Sbjct: 382 WNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKAC 424
Score = 59.3 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 11 FTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHIL 70
F F + P + L + F Q + T++ + CS ++L G++ H ++
Sbjct: 16 FNFQSKSPFKTL---PISPFSSYQATPT---KKKTFSHIFQECSDRKALCPGKQAHARMI 69
Query: 71 SSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN 130
++ +P V + N ++ MY KC L A V D MPQR D SWNA++ G A +
Sbjct: 70 LTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQR------DTVSWNAMLFGYAGRGD 123
Query: 131 ANEAMSLFSEM 141
A LF M
Sbjct: 124 IGVAQKLFDAM 134
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 64 KVHDHILSSKSQPDVVLQNYILNMYGKCGSLED-ARVVSDEMPQRNVIESPDLASWNAII 122
++H H L + DVV+ L+MY KC +L D + + + +P N L S+NAII
Sbjct: 232 QLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHN------LQSYNAII 285
Query: 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
G A EA+ +F ++ L D +++ AC
Sbjct: 286 VGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRAC 323
>gi|302796687|ref|XP_002980105.1| hypothetical protein SELMODRAFT_111767 [Selaginella moellendorffii]
gi|300152332|gb|EFJ18975.1| hypothetical protein SELMODRAFT_111767 [Selaginella moellendorffii]
Length = 696
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
+S C++L G+++H ILSS V+L N ++ MYGKCGS+E+AR D MP+R
Sbjct: 17 VSACAALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCGSVEEARNAFDRMPER-- 74
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
DL SWNA+I A +A+ L++ R PD +T SLL AC + ++ +
Sbjct: 75 ----DLISWNAMITVYAQHECGKQAIQLYAYSRLEGTKPDEVTFASLLNACFASGDLKF 129
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 42/117 (35%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ CSSL L+ G+ VH L S + ++N +++MYGKC SL DAR V D M
Sbjct: 214 TFLTVLDACSSLEVLETGKHVHRLALGSGLDFSLRMENSLISMYGKCSSLGDARDVFDRM 273
Query: 105 P-QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+RNVI +W A++AG A + + L EM + P +T LL C
Sbjct: 274 RYRRNVI------TWTAMVAGHAQCEDLAGGIYLCREMMLEGVRPQPVTFAGLLDGC 324
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A L++ C + L+ GR +H+H L + D ++ N +++MY CGSL+DA V +
Sbjct: 113 TFASLLNACFASGDLKFGRLLHEHFLGTNFVSDQIVCNGLISMYSDCGSLDDATAVFEWS 172
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
Q PD+ +W +IA A + + +M L + +T ++L AC+S
Sbjct: 173 FQ------PDVCTWTTVIAAYTRHGKLECAFATWRKMHQEGLRSNEITFLTVLDACSS 224
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EA+ F+ L N + +T ++ C+++ + + GR++H +L+ + + N
Sbjct: 494 EAIKTFE-LMNLEGVKPNATTLTSVLRACATVGAHEQGRRIHALVLAGPYAQNTTVLNAA 552
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++Y KC + DA V +P + D SWNAI++ A +A+ L +M+
Sbjct: 553 ASLYAKCSRVADASRVFSSIPCK------DAVSWNAIVSAYAKQGLFRDAIFLSRQMQVE 606
Query: 145 ELIPDGLTVRSLLCACT 161
+PD +T ++L +C+
Sbjct: 607 GFVPDDITFITILYSCS 623
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 7/128 (5%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA-R 98
R +P T+A L+ C +L +G +H ++ + D + N ++NMY K G LEDA +
Sbjct: 311 RPQPVTFAGLLDGCRGREALAVGASIHGYVRLGGMESDSAVNNALVNMYSKSGGLEDAVK 370
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V +D QR +++ +SW ++I EA L+ + + D S+L
Sbjct: 371 VFND---QRQDLKT---SSWASVIGAYVQHGLKREATELYHHLDLEGMEVDENVFASVLG 424
Query: 159 ACTSPSNV 166
C S + V
Sbjct: 425 FCDSATQV 432
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+ +A ++ C S + R VH IL+S + +V N ++ YGK G ++AR V
Sbjct: 417 NVFASVLGFCDSATQV---RDVHSRILASGLEQRMVAANAVMTAYGKAGHPDEAREVFLG 473
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
I P + SW+A+IA EA+ F M + P+ T+ S+L AC +
Sbjct: 474 ------ISRPSVISWSALIAAYGQHW---EAIKTFELMNLEGVKPNATTLTSVLRACAT 523
>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 703
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 10/136 (7%)
Query: 29 AFD-FLQNNTNFRIRPST--YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
A+D FLQ T +P + +++ C+S +L+ +K+H H L S + DV + ++
Sbjct: 315 AYDLFLQMQTE-GCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALV 373
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+MY K GS++DARVV D M RNV+ SWNA+I+G+A +A+ +F M
Sbjct: 374 HMYSKSGSIDDARVVFDRMKVRNVV------SWNAMISGLAQHGLGQDALEVFRRMTAHG 427
Query: 146 LIPDGLTVRSLLCACT 161
+ PD +T ++L AC+
Sbjct: 428 VKPDRVTFVAVLSACS 443
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 6/124 (4%)
Query: 39 FRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
F+ TY +++ C+S +L+ ++VH H L + + DV + ++ MY K GS++DAR
Sbjct: 226 FKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDAR 285
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
VV D M R+V+ SWN +I A +EA LF +M+ PD + S+L
Sbjct: 286 VVFDRMKVRDVV------SWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILN 339
Query: 159 ACTS 162
AC S
Sbjct: 340 ACAS 343
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY ++ C+SL +L+ G++VH I + DV + +L MYGKCGS+ +AR + D +
Sbjct: 131 TYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNL 190
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
++I SW +I A N EA L +M P+ +T S+L AC S
Sbjct: 191 MNHDII------SWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACAS 242
Score = 72.0 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y ++ C + L ++VHD I+ S+ + + + N +L++Y +CG L++AR V D +
Sbjct: 31 YVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALV 90
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+++ ASWNA+IAG +A +AM LF EM + P+ T +L AC S S
Sbjct: 91 KKSG------ASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLS 143
Score = 36.2 bits (82), Expect = 5.1, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYIL 85
A + + T ++P T+ ++S CS + GR + + +PDV N ++
Sbjct: 416 ALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMV 475
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN 130
++ G+ G L +A++ D N+ PD A+W A++ + N
Sbjct: 476 DLLGRAGRLMEAKLFID-----NMAVDPDEATWGALLGSCRTYGN 515
>gi|347954506|gb|AEP33753.1| chloroplast biogenesis 19, partial [Matthiola incana]
Length = 324
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 82/149 (55%), Gaps = 11/149 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ EALV F +Q + ++P A + ++ C++L L G VH ++++ + +
Sbjct: 8 KGFQEEALVWFREMQISG---VKPDYVAIIAALNACTNLGXLSFGLWVHRYVMNQDFKNN 64
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + N +++Y +CG +E AR V D+M +R V+ SWN++I G A+ NA+E++
Sbjct: 65 VRVSNSXIDLYCRCGCVEFAREVFDKMEKRTVV------SWNSVIVGFAANGNAHESLVY 118
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNV 166
F +M+++ PD +T L AC+ V
Sbjct: 119 FRKMQEKGFKPDAVTFTGALTACSHVGXV 147
>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
Length = 516
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 79/140 (56%), Gaps = 8/140 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y EA+ F F + + +T+ +S C++L L +GR+VH I + V + N
Sbjct: 233 YKEAIELF-FRMLQSGLKPDDATFVVTLSACAALGELDIGRRVHSCIDHTGLGNVVSVSN 291
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG +E A + ++M RN++ SWN +I G+A + +EA+ LFS+M
Sbjct: 292 SLIDMYAKCGVVEAAYEIFNKMKGRNIV------SWNTMILGLAMHGHGDEALELFSKML 345
Query: 143 DREL-IPDGLTVRSLLCACT 161
+ +L P+ +T +LCAC+
Sbjct: 346 EEKLATPNEVTFLGVLCACS 365
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY+ L+ C L S LG+++H ++L + V ++N +++MYG +E A + +EM
Sbjct: 153 TYSFLVKVCGQLGSDLLGKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEM 212
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P+ L +WN II EA+ LF M L PD T L AC +
Sbjct: 213 PKSY------LVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAA 264
Score = 41.6 bits (96), Expect = 0.099, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 17/147 (11%)
Query: 16 SQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQ 75
S P LY L N F R + C S++ L+ ++H H++ + +
Sbjct: 30 SLPFSKLYPTTL------SENEGFDSREERVMSVFKQCESMKHLE---QLHAHVIQTGLE 80
Query: 76 PDVVLQNYILNM--YGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
++ + I+ +CGS++ A V + IE+PD WN +I G+ +
Sbjct: 81 QNLFVMGKIIVFCAVSECGSMDYALRVFGK------IENPDGFLWNTMIRGLGRTRQPEK 134
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCAC 160
A + M+ + + D T L+ C
Sbjct: 135 AFEFYKRMQVKGEVLDNFTYSFLVKVC 161
>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
Length = 730
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ ++S CS++ +L+ G ++H + S DVV+ + ++NMY KCG ++DA EM
Sbjct: 355 TFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEM 414
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P R + +W ++I+G + EA+ LF EMR + P+ +T SLL AC+
Sbjct: 415 PTRTFV------TWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACS 465
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 15/150 (10%)
Query: 15 NSQPIQNLYNEALVA-FDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK 73
NSQP L E V + + +++ + + ACL S + LG++VH + +
Sbjct: 117 NSQPALGL--EVFVEMLEMGRYPSHYTLGATLNACLASC-----DVDLGKQVHGYAIKYG 169
Query: 74 SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
++ + N + ++Y K GSL+ A +P++NVI +W +I+ A E
Sbjct: 170 AESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVI------TWTTMISACAEDEECVE 223
Query: 134 -AMSLFSEMRDRELIPDGLTVRSLLCACTS 162
MSLF +M ++P+ T+ S++ C +
Sbjct: 224 LGMSLFIDMLMDGVMPNEFTLTSVMSLCGT 253
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 63/129 (48%), Gaps = 17/129 (13%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S C + L LG++V + ++ ++N + +Y + G ++A + ++M
Sbjct: 243 TLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQM 302
Query: 105 PQRNVIESPDLASWNAIIAGVA-----------SPSNANEAMSLFSEMRDRELIPDGLTV 153
++I +WNA+I+G A + S +A+++F +++ + PD T
Sbjct: 303 EDASII------TWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTF 356
Query: 154 RSLLCACTS 162
S+L C++
Sbjct: 357 SSILSVCSA 365
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
DAR + D MP+RNV+ +W A++ G S + +F EM + P T+ +
Sbjct: 91 DARRLFDGMPERNVV------TWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGA 144
Query: 156 LLCACTSPSNV 166
L AC + +V
Sbjct: 145 TLNACLASCDV 155
>gi|357138796|ref|XP_003570973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 472
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 6/118 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T + S C+ L SL+ + +H ++ D+++ N +++MYGKCG +E AR +
Sbjct: 223 ATIVSVASACAGLGSLEYAKWLHGYVEKLGFGSDLIVTNALMDMYGKCGGVESARAL--- 279
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
N++ DL SW II+G+AS + E ++LFS M+ ++PD T +L AC+
Sbjct: 280 ---FNLMHEKDLHSWTTIISGLASHGHVKEGLALFSSMQKMGVLPDSTTFIVVLSACS 334
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ LI CS L +H + + Q ++NMY CG AR V DEM
Sbjct: 122 TFPFLIHACSG-SDPPLCESLHGQSIRVGYSSHLFTQTALMNMYFVCGLAAPARRVFDEM 180
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI--PDGLTVRSLLCACTS 162
R+V+ W +++G EA+ +F EMR E + P+ T+ S+ AC
Sbjct: 181 QARDVV------VWTGMVSGYVDTGMHLEAVEVFQEMRRGEEVASPNVATIVSVASACAG 234
Query: 163 PSNVLY 168
++ Y
Sbjct: 235 LGSLEY 240
>gi|224096616|ref|XP_002310672.1| predicted protein [Populus trichocarpa]
gi|222853575|gb|EEE91122.1| predicted protein [Populus trichocarpa]
Length = 551
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 7/140 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N ++AL F +Q + +I + + C+++ SL +GR++H L K DV +
Sbjct: 280 NYSSKALDLFKEIQQ-MHMKIDDVILCSMFNICANISSLSVGRQIHALALKCKPTYDVAM 338
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MY K G ++DA +EM ++NVI SW ++I G S + +EA++LF +
Sbjct: 339 GNALIDMYAKSGEIKDANRAFNEMEEKNVI------SWTSLITGYGSHGHGHEAIALFKK 392
Query: 141 MRDRELIPDGLTVRSLLCAC 160
M L P+ +T SLL AC
Sbjct: 393 MEYEGLKPNDITFLSLLFAC 412
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 9/146 (6%)
Query: 23 YNEALVAF-DFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
Y +AL+ F D L+ F+ TY ++ C+ LR LQ G ++ + S+ ++++Q
Sbjct: 79 YQDALLVFLDMLR--AGFKANQFTYGSVLRACTGLRCLQRGMQIQGCLEKSRFASNLIVQ 136
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+ +L+++ KCG +EDA + M +R+V+ SWNAII A + ++ +F M
Sbjct: 137 SALLDLHSKCGKMEDASYLFGMMEERDVV------SWNAIIGAYAVQGFSGDSFRMFRSM 190
Query: 142 RDRELIPDGLTVRSLLCACTSPSNVL 167
+ PD T S+L A S+V+
Sbjct: 191 MQEGMSPDLFTFGSVLKASGMASDVI 216
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 53 CSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIES 112
C ++ + G +H+ IL++ ++ L ++ Y K G AR V D MP+R V+
Sbjct: 7 CIETKAKKPGHLIHNQILTNGFASNIHLSTKLIIFYSKLGDTVSARKVFDRMPERTVV-- 64
Query: 113 PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
SW+A I+G + +A+ +F +M + T S+L ACT
Sbjct: 65 ----SWSAQISGYSQNGCYQDALLVFLDMLRAGFKANQFTYGSVLRACTG 110
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 64 KVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIA 123
++H I+ + L +++ Y KC SL A + MP + D+ S A++
Sbjct: 220 QIHQLIIQLGYGSHISLSGSLIDAYAKCESLASAHCLYKSMPMK------DMISCTALMT 273
Query: 124 GVASPSN-ANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
G A SN +++A+ LF E++ + D + + S+ C + S++
Sbjct: 274 GYARDSNYSSKALDLFKEIQQMHMKIDDVILCSMFNICANISSL 317
>gi|449450760|ref|XP_004143130.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Cucumis sativus]
gi|449496662|ref|XP_004160192.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Cucumis sativus]
Length = 547
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 48/145 (33%), Positives = 81/145 (55%), Gaps = 11/145 (7%)
Query: 19 IQNLYNEALVAFDFLQN--NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
+QN NE AFD + N F +T + L+ C+S+ + + G+++H H L+ +
Sbjct: 276 VQNFRNEE--AFDTFRRMLNAGFHPTSATISSLLPACASVGNGRCGKEIHGHSLALGVEK 333
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DV ++ +++MY KCG +A+++ M +RN A+WN++I G A+ NEA+
Sbjct: 334 DVYVRTALVDMYAKCGYFYEAKILFWRMSERNS------ATWNSMIFGYANHGYCNEAIE 387
Query: 137 LFSEMR-DRELIPDGLTVRSLLCAC 160
LF +M+ D E D LT ++L AC
Sbjct: 388 LFHQMKDDDEKKLDHLTFTAILTAC 412
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y EAL F LQ +RPS Y ++ C L GRK+H IL + + D +
Sbjct: 110 YPEALSVFCELQRGG---LRPSEYIIPSVLKACGHLSEKTTGRKLHTLILKNSLESDAYV 166
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ +++MY K G +E AR V + M + DL + NA+++G A A EA++L E
Sbjct: 167 CSALIDMYAKSGEVEKARRVFESMAGK------DLVALNAMVSGYAHHGLAEEALNLVEE 220
Query: 141 MRDRELIPDGLTVRSLL 157
M+ + P+ +T +L+
Sbjct: 221 MQVLGIKPNLVTWNTLV 237
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y LI TC R L GR +H ++ S + Y CG ++DAR++ D++P
Sbjct: 31 YIELIETCGRNRDLNFGRSLHARLIIDGSARLTHFAAKFIAFYAACGKIKDARILFDKIP 90
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ N W +I + EA+S+F E++ L P + S+L AC
Sbjct: 91 RTNP------RRWIVLIGAYSRCGYYPEALSVFCELQRGGLRPSEYIIPSVLKAC 139
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+P++V N ++ + + G E R + EM + N IE PD+ SW ++I+G EA
Sbjct: 227 KPNLVTWNTLVTGFSQIGEEEMVRELFKEM-EANGIE-PDVVSWTSVISGFVQNFRNEEA 284
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165
F M + P T+ SLL AC S N
Sbjct: 285 FDTFRRMLNAGFHPTSATISSLLPACASVGN 315
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 59/123 (47%), Gaps = 11/123 (8%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
NEA+ F ++++ ++ T+ +++ C+ + LGR + ++ SK +++Y
Sbjct: 383 NEAIELFHQMKDDDEKKLDHLTFTAILTACAHAGLVDLGRSLF-QLMQSKYGIVPRVEHY 441
Query: 84 --ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN---ANEAMSLF 138
+++++G+ G L +A + MP + PDL W A++ A EA
Sbjct: 442 ACMVDVFGRAGKLAEAYDLIKTMPVK-----PDLYVWGALLGACRKHGEIELAEEAAKHL 496
Query: 139 SEM 141
SE+
Sbjct: 497 SEL 499
>gi|383130005|gb|AFG45720.1| Pinus taeda anonymous locus 0_12933_01 genomic sequence
gi|383130008|gb|AFG45723.1| Pinus taeda anonymous locus 0_12933_01 genomic sequence
gi|383130010|gb|AFG45725.1| Pinus taeda anonymous locus 0_12933_01 genomic sequence
gi|383130012|gb|AFG45727.1| Pinus taeda anonymous locus 0_12933_01 genomic sequence
gi|383130013|gb|AFG45728.1| Pinus taeda anonymous locus 0_12933_01 genomic sequence
gi|383130018|gb|AFG45733.1| Pinus taeda anonymous locus 0_12933_01 genomic sequence
Length = 147
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
T+ I+PSTYA L+ +C+ +L G+ +H HI D L N ++ MY +C +L D
Sbjct: 31 TSIPIKPSTYAYLLQSCTKKNALPEGKLIHAHINERAPATDTFLHNSLIMMYVRCRNLTD 90
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
AR V D MP+R D SWN +IA A EA+ +F +M+ + P+ T S+
Sbjct: 91 ARKVFDRMPER------DDFSWNVMIAAYTKHGIAEEALRMFYQMQRTGIEPNSFTFVSV 144
Query: 157 LCA 159
L A
Sbjct: 145 LPA 147
>gi|357474955|ref|XP_003607763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508818|gb|AES89960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 871
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 9/136 (6%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A + + +RI P+ T A L+S C+ L ++ +G+ +H ++ D L+N +++
Sbjct: 326 ALELFTDKKWYRILPNSVTLASLLSACAQLENIVMGKLLHV-LVVKYGLDDTSLRNSLVD 384
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG + DA V ++V+ SWN++I+G A +A EA+ LF+ MR
Sbjct: 385 MYAKCGLIPDAHYVFATTVDKDVV------SWNSVISGYAQSGSAYEALDLFNRMRMESF 438
Query: 147 IPDGLTVRSLLCACTS 162
+PD +TV +L AC S
Sbjct: 439 LPDAVTVVGVLSACAS 454
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T L++ C+ L L G+ VH +++ + + + L +LNMY KCG + DAR V DE
Sbjct: 237 TVGSLVTACTKLGCLHQGKWVHGYVIKNGIEINSYLATSLLNMYVKCGDIGDARSVFDEF 296
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
DL W A+I G A+ LF++ + ++P+ +T+ SLL AC
Sbjct: 297 SVSTCGGGDDLVFWTAMIVGYTQRGYPQAALELFTDKKWYRILPNSVTLASLLSACAQLE 356
Query: 165 NVL 167
N++
Sbjct: 357 NIV 359
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++ L+ T S LR + L K+H +IL S + VL + +++ Y KCG L DAR V DE+
Sbjct: 137 VFSILLKTASQLRDIVLTTKLHCNILKSNAADSFVLTS-LVDAYSKCGKLRDARKVFDEI 195
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P R+V+ SW ++I A E + LF+ MR+ L + TV SL+ ACT
Sbjct: 196 PDRSVV------SWTSMIVAYVQNECAEEGLMLFNRMREGFLDGNVFTVGSLVTACT 246
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILS-SKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T ++S C+S+ + Q+G +H L + + +LN Y KCG AR+V D
Sbjct: 444 TVVGVLSACASVGAHQIGLSLHGFALKYGLVSSSIYVGTALLNFYAKCGDATSARMVFDG 503
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
M ++N + +W A+I G + +++LF +M EL+P+ + +LL AC+
Sbjct: 504 MGEKNAV------TWAAMIGGCGMQGDGVGSLALFRDMLKEELVPNEVVFTTLLAACSHS 557
Query: 164 SNV 166
V
Sbjct: 558 GMV 560
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 7/155 (4%)
Query: 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILS 71
T N I NEAL FD ++ + +T L+S C+ L +L G +H +I
Sbjct: 268 TMINGYAICGKPNEALALFDQMRA-VGVKPTEATVVSLLSACAHLGALDKGLHLHTYIND 326
Query: 72 SKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNA 131
++ + + ++ +++MY KCG + A V N +ES D+ +WN IIAG+A N
Sbjct: 327 NRIEVNSIVGTALVDMYAKCGKISLATQVF------NAMESKDVLAWNTIIAGMAIHGNV 380
Query: 132 NEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
EA LF EM++ + P+ +T ++L AC+ V
Sbjct: 381 KEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMV 415
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 60/148 (40%), Gaps = 37/148 (25%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSK------------------------------- 73
TY +I C+ G VH H++ S
Sbjct: 168 TYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLC 227
Query: 74 SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
S DVV N +++ Y K + AR+V D M R+VI SWN +I G A NE
Sbjct: 228 SARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVI------SWNTMINGYAICGKPNE 281
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACT 161
A++LF +MR + P TV SLL AC
Sbjct: 282 ALALFDQMRAVGVKPTEATVVSLLSACA 309
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 8/142 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS-KSQPDVV 79
N Y EAL F +Q +N T+ ++ C+ L +L LG+ +H +I +
Sbjct: 344 NSYKEALALFRKMQQ-SNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTS 402
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
L +++MY KCG++E A+ V M ++ L SWNA+I+G+A +AN A+ LF
Sbjct: 403 LWTSLIDMYAKCGNIEAAKQVFAGMKPKS------LGSWNAMISGLAMHGHANMALELFR 456
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
+MRD PD +T +L AC+
Sbjct: 457 QMRDEGFEPDDITFVGVLSACS 478
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 7/139 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ EAL F ++ N ST ++S C+ SL+LG V I ++ L N
Sbjct: 245 FEEALAFFQEMKR-ANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVN 303
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG L+ AR + + + ++++I SWN +I G + ++ EA++LF +M+
Sbjct: 304 ALIDMYSKCGDLDKARDLFEGICEKDII------SWNVMIGGYSHMNSYKEALALFRKMQ 357
Query: 143 DRELIPDGLTVRSLLCACT 161
+ P+ +T S+L AC
Sbjct: 358 QSNVEPNDVTFVSILPACA 376
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 39/171 (22%)
Query: 29 AFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A DF + P++Y L+ +C+ + + Q G+++H H+L + D + ++N
Sbjct: 116 AIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLIN 175
Query: 87 MYGKCGS-------------------------------LEDARVVSDEMPQRNVIESPDL 115
MY + G L+DAR + +E+P R+ +
Sbjct: 176 MYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAV----- 230
Query: 116 ASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
SWNA+IAG A EA++ F EM+ + P+ T+ ++L AC ++
Sbjct: 231 -SWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSL 280
>gi|297846216|ref|XP_002890989.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297336831|gb|EFH67248.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 792
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 50/161 (31%), Positives = 91/161 (56%), Gaps = 14/161 (8%)
Query: 6 KTQLRFTFYNSQPIQN-LYNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLG 62
K + +T S +QN L+ EA L + ++P STY+ L+S+ + +L G
Sbjct: 459 KDGVTWTVMISGLVQNELFAEAA---SLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQG 515
Query: 63 RKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNA 120
+ +H I + + PD++LQN +++MY KCG+++DA + +M ++ D+ SWN+
Sbjct: 516 KHLHCVIAKTTACYDPDLILQNSLVSMYAKCGAIDDAYEIFSKMVRK------DIVSWNS 569
Query: 121 IIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+I G++ A++A+ LF EM D + P+ +T +L AC+
Sbjct: 570 VIIGLSHHGLADKALKLFKEMLDSGMKPNSVTFLGVLSACS 610
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 56 LRSLQLGRKVH-----DHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI 110
LR L G VH D I S V+ +L Y K G L++ARV+ + MP+RN++
Sbjct: 80 LRRLSEGGLVHARHLLDKIPQRGSISRVIYCTSLLTKYAKAGYLDEARVLFEVMPERNIV 139
Query: 111 ESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+ NA++ G NEA +LF EM
Sbjct: 140 ------TCNAMLTGYVKCRRLNEAWTLFREM 164
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 8/94 (8%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+ + S+ +VV ++ Y + G + +A + EMP+RNV+ SW A+I+G A
Sbjct: 252 LFENMSEKNVVTWTSMVYGYCRYGDVHEAYRLFCEMPERNVV------SWTAMISGFAWN 305
Query: 129 SNANEAMSLFSEM-RDRELI-PDGLTVRSLLCAC 160
EA+ LF EM +D + I P+G T+ SL AC
Sbjct: 306 EFYREALMLFLEMKKDVDAISPNGETLISLAYAC 339
Score = 38.5 bits (88), Expect = 0.92, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+VV N ++ + G E A+ V D MP R D SWNA+I G EA
Sbjct: 198 NVVSWNTLVTGLIRNGETEKAKQVFDAMPSR------DAVSWNAMIKGYIENGGMEEAKL 251
Query: 137 LFSEMRDRELI 147
LF M ++ ++
Sbjct: 252 LFENMSEKNVV 262
>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 13/143 (9%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL AF ++ + + R S++ C I CSSL + G++ H Q D+ + + +
Sbjct: 59 EALRAFSSMRKLSLYPTR-SSFPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSAL 117
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM--- 141
+ MY CG LEDAR V DE+P+RN++ SW ++I G NA +A+SLF ++
Sbjct: 118 IVMYSTCGKLEDARKVFDEIPKRNIV------SWTSMIRGYDLNGNALDAVSLFKDLLIE 171
Query: 142 ---RDRELIPDGLTVRSLLCACT 161
D + D + + S++ AC+
Sbjct: 172 ENDDDATMFLDSMGMVSVISACS 194
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+ NEA F L T + ++ S +L++G+ +HD ++ + DV++
Sbjct: 266 MSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVG 325
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
I++MY KCG +E AR+ D M +NV SW A+IAG +A +A+ LF M
Sbjct: 326 TSIIDMYCKCGRVETARLAFDRMKNKNV------RSWTAMIAGYGMHGHAAKALELFPAM 379
Query: 142 RDRELIPDGLTVRSLLCACT 161
D + P+ +T S+L AC+
Sbjct: 380 IDSGVRPNYITFVSVLAACS 399
Score = 40.4 bits (93), Expect = 0.28, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
++ D+ SWN++IA +A ++ EA+ FS MR L P T S CA + S++L
Sbjct: 36 VDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYP---TRSSFPCAIKACSSLL 90
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS--LEDARVVSDEMPQ 106
+IS CS + + L +H ++ V + N +L+ Y K G + AR + D++
Sbjct: 189 VISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVD 248
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSLLCACT 161
+ D S+N+I++ A +NEA +F + +++ + + +T+ ++L A +
Sbjct: 249 K------DRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVS 298
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 28/164 (17%)
Query: 26 ALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSS-KSQPDVVLQN 82
A+ A D Q R+ P T A +IS C+SL ++++G++VH ++ + K + D++L N
Sbjct: 234 AVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSN 293
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESP-------------------------DLAS 117
++MY KC +++AR + D MP RNVI ++ S
Sbjct: 294 AFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVS 353
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
WNA+IAG EA+SLF ++ + P + ++L AC
Sbjct: 354 WNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACA 397
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 7/142 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F + F + ++A ++S CS L + G +VH I S DV + + +
Sbjct: 135 EALCYFAMMHKE-GFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSAL 193
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MY KCG++ DA+ V DEM RNV+ SWN++I A EA+ +F M +
Sbjct: 194 VDMYSKCGNVNDAQRVFDEMGDRNVV------SWNSLITCFEQNGPAVEALDVFQMMLES 247
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
+ PD +T+ S++ AC S S +
Sbjct: 248 RVEPDEVTLASVISACASLSAI 269
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 17/150 (11%)
Query: 25 EALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILS------SKSQP 76
EAL F L+ + + P+ Y A ++ C+ L L LG + H H+L S +
Sbjct: 369 EALSLFCLLKRES---VCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEED 425
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D+ + N +++MY KCG +E+ +V +M +R D SWNA+I G A NEA+
Sbjct: 426 DIFVGNSLIDMYVKCGCVEEGYLVFRKMMER------DCVSWNAMIIGFAQNGYGNEALE 479
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
LF EM + PD +T+ +L AC V
Sbjct: 480 LFREMLESGEKPDHITMIGVLSACGHAGFV 509
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 62/104 (59%), Gaps = 9/104 (8%)
Query: 44 STYACLISTC--SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
S +A L+ +C S L ++ + R VH ++ S ++ +QN +++ Y KCGSLED R V
Sbjct: 20 SPFAKLLDSCIKSKLSAIYV-RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVF 78
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
D+MPQRN+ +WN+++ G+ +EA SLF M +R+
Sbjct: 79 DKMPQRNIY------TWNSVVTGLTKLGFLDEADSLFRSMPERD 116
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 82.4 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 11/139 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+EA++ F + N+ ++P T+ C++ CS L++L G ++H I+ ++
Sbjct: 106 HEAILLFKEMHENS---VQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVK 162
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N +++MY CG +E AR V DEM +RNV +WN++ AG N E + LF EM
Sbjct: 163 NTLIHMYANCGEVEVARRVFDEMSERNV------RTWNSMFAGYTKSGNWEEVVKLFHEM 216
Query: 142 RDRELIPDGLTVRSLLCAC 160
+ ++ D +T+ S+L AC
Sbjct: 217 LELDIRFDEVTLVSVLTAC 235
Score = 72.4 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 77/146 (52%), Gaps = 14/146 (9%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS 74
N + + L++E L + R T +++ C L L+LG ++ ++
Sbjct: 205 NWEEVVKLFHEML--------ELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGL 256
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+ + L +++MY KCG ++ AR + D+M +R+V+ +W+A+I+G + S EA
Sbjct: 257 KGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVV------AWSAMISGYSQASRCREA 310
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCAC 160
+ LF EM+ + P+ +T+ S+L +C
Sbjct: 311 LDLFHEMQKANIDPNEITMVSILSSC 336
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 8/135 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A D I P+ T ++S+C+ L +L+ G+ VH I + + V L +++
Sbjct: 310 ALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMD 369
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
Y KCGS+E + V +MP +NV+ SW +I G+AS +A+ F M ++ +
Sbjct: 370 FYAKCGSVESSIEVFGKMPVKNVL------SWTVLIQGLASNGQGKKALEYFYLMLEKNV 423
Query: 147 IPDGLTVRSLLCACT 161
P+ +T +L AC+
Sbjct: 424 EPNDVTFIGVLSACS 438
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I+ PD ++N +I G + +EA+ LF EM + + PD T +L C+
Sbjct: 84 IDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCS 135
>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
Length = 770
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ ++S CS++ +L+ G ++H + S DVV+ + ++NMY KCG ++DA EM
Sbjct: 395 TFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEM 454
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P R + +W ++I+G + EA+ LF EMR + P+ +T SLL AC+
Sbjct: 455 PTRTFV------TWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACS 505
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
++ + Y L+ C SL R VH H+ + + D+ + ++N Y +C + DAR +
Sbjct: 76 VQSAMYVPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARDARRL 135
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
D MP+RNV+ +W A++ G S + +F EM + P T+ + L AC
Sbjct: 136 FDGMPERNVV------TWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNAC 189
Query: 161 TSPSNV 166
+ +V
Sbjct: 190 LASCDV 195
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 15/150 (10%)
Query: 15 NSQPIQNLYNEALVA-FDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK 73
NSQP L E V + + +++ + + ACL S + LG++VH + +
Sbjct: 157 NSQPALGL--EVFVEMLEMGRYPSHYTLGATLNACLASC-----DVDLGKQVHGYAIKYG 209
Query: 74 SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
++ + N + ++Y K GSL+ A +P++NVI +W +I+ A E
Sbjct: 210 AESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVI------TWTTMISACAEDEECVE 263
Query: 134 -AMSLFSEMRDRELIPDGLTVRSLLCACTS 162
MSLF +M ++P+ T+ S++ C +
Sbjct: 264 LGMSLFIDMLMDGVMPNEFTLTSVMSLCGT 293
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 63/129 (48%), Gaps = 17/129 (13%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S C + L LG++V + ++ ++N + +Y + G ++A + ++M
Sbjct: 283 TLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQM 342
Query: 105 PQRNVIESPDLASWNAIIAGVA-----------SPSNANEAMSLFSEMRDRELIPDGLTV 153
++I +WNA+I+G A + S +A+++F +++ + PD T
Sbjct: 343 EDASII------TWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTF 396
Query: 154 RSLLCACTS 162
S+L C++
Sbjct: 397 SSILSVCSA 405
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 78/137 (56%), Gaps = 8/137 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F+ +Q F + T L++ C+ L +LQ G+ VHD+I + + +V++ I
Sbjct: 246 EALELFNKMQVE-GFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAI 304
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MY KCGS+E+A V + P+R L+ WN+II G+A + EA FS++
Sbjct: 305 IDMYCKCGSVENAVEVFETCPRRG------LSCWNSIIIGLAMNGHEREAFEFFSKLESS 358
Query: 145 ELI-PDGLTVRSLLCAC 160
+L+ PD ++ +L AC
Sbjct: 359 KLLKPDSVSFIGVLTAC 375
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
R+V D DVV N ++ Y KCG ++++R + D+M R + SWN++
Sbjct: 181 ARRVFDGKKLELYDHDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSV------SWNSM 234
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I+G EA+ LF++M+ T+ SLL AC
Sbjct: 235 ISGYVRNGKLMEALELFNKMQVEGFEVSEFTMVSLLNACA 274
>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g35030, mitochondrial-like [Cucumis sativus]
Length = 649
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 4/137 (2%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F +Q N + T+ ++ CS L +L G+++H I + Q + + +
Sbjct: 333 EALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSAL 392
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+NMY KCG LE AR + D+ I D+ SWN +IA A + ++A+SLF EM+
Sbjct: 393 INMYSKCGELELARKIFDD----GSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQAL 448
Query: 145 ELIPDGLTVRSLLCACT 161
PD +T +LL AC+
Sbjct: 449 GFRPDNVTYIALLSACS 465
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DV+ ++ K G ++DAR++ D+MP RNV+ SWN +I G A +EA
Sbjct: 221 DVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVV------SWNTMIIGYAQNMRLDEAFK 274
Query: 137 LFSEMRDREL 146
LF +M +REL
Sbjct: 275 LFEQMPEREL 284
Score = 44.7 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 54 SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESP 113
S + Q+ K+ + + +V N+++ GK G + +AR V +EMP R+V+
Sbjct: 42 SQFSTCQVVPKISSPVRDFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVV--- 98
Query: 114 DLASWNAIIAGVASPSNANEAMSLF 138
SW A+I G EA +LF
Sbjct: 99 ---SWTAVITGYIKCGMIEEAKTLF 120
Score = 43.9 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+S ++ R++ D + +V+ N ++ Y + G ++ A + + M
Sbjct: 131 TWTALVSGYVRWNRIEEARRLFD----AMPVKNVISWNTMIEGYARKGWIDQALDLFEXM 186
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
P+RNV+ SWN +I +EA LF+ M +R++I
Sbjct: 187 PERNVV------SWNTVITAFMQRRRVDEAQELFNRMPERDVI 223
Score = 43.1 bits (100), Expect = 0.042, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+VV +++ Y + +E+AR + D MP +NVI SWN +I G A ++A+
Sbjct: 128 NVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVI------SWNTMIEGYARKGWIDQALD 181
Query: 137 LFSEMRDRELI 147
LF M +R ++
Sbjct: 182 LFEXMPERNVV 192
>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Cucumis sativus]
Length = 649
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 4/137 (2%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F +Q N + T+ ++ CS L +L G+++H I + Q + + +
Sbjct: 333 EALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSAL 392
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+NMY KCG LE AR + D+ I D+ SWN +IA A + ++A+SLF EM+
Sbjct: 393 INMYSKCGELELARKIFDD----GSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQAL 448
Query: 145 ELIPDGLTVRSLLCACT 161
PD +T +LL AC+
Sbjct: 449 GFRPDNVTYIALLSACS 465
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DV+ ++ K G ++DAR++ D+MP RNV+ SWN +I G A +EA
Sbjct: 221 DVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVV------SWNTMIIGYAQNMRLDEAFK 274
Query: 137 LFSEMRDREL 146
LF +M +REL
Sbjct: 275 LFEQMPEREL 284
Score = 44.7 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 54 SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESP 113
S + Q+ K+ + + +V N+++ GK G + +AR V +EMP R+V+
Sbjct: 42 SQFSTCQVVPKISSPVRDFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVV--- 98
Query: 114 DLASWNAIIAGVASPSNANEAMSLF 138
SW A+I G EA +LF
Sbjct: 99 ---SWTAVITGYIKCGMIEEAKTLF 120
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+S ++ R++ D + +V+ N ++ Y + G ++ A + ++M
Sbjct: 131 TWTALVSGYVRWNRIEEARRLFD----AMPVKNVISWNTMIEGYARKGWIDQALDLFEKM 186
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
P+RNV+ SWN +I +EA LF+ M +R++I
Sbjct: 187 PERNVV------SWNTVITAFMQRRRVDEAQELFNRMPERDVI 223
Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+VV +++ Y + +E+AR + D MP +NVI SWN +I G A ++A+
Sbjct: 128 NVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVI------SWNTMIEGYARKGWIDQALD 181
Query: 137 LFSEMRDRELI 147
LF +M +R ++
Sbjct: 182 LFEKMPERNVV 192
>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Brachypodium distachyon]
Length = 598
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 43/118 (36%), Positives = 66/118 (55%), Gaps = 8/118 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY L+ C+ L +L+ G +H + V ++N ++++YG CG E A V DE+
Sbjct: 124 TYPPLLQACARLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEI 183
Query: 105 P--QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P +RN L SWN+++ G A+ NE +++F EM + E PDG TV S+L AC
Sbjct: 184 PPPERN------LVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTAC 235
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 7/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T +++ C+ + L LGR+VH + + N ++++Y KCG ++DAR + EM
Sbjct: 227 TVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEM 286
Query: 105 P-QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R V+ SW ++I G+A +A+ LFS M +L+P +T+ +L AC+
Sbjct: 287 GVGRTVV------SWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACS 338
>gi|6041788|gb|AAF02108.1|AC009755_1 hypothetical protein [Arabidopsis thaliana]
Length = 332
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TYA ++ TC++L S LG+++H ++ + Q DV + + +++MY KCG L D+R++ ++
Sbjct: 34 TYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKS 93
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+R D +WNA+I G A EA+ LF M + P+ +T S+L AC
Sbjct: 94 LRR------DFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACA 144
>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
Length = 1974
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 11/138 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+AL+ F +Q N F P + ++ C SL+ + LG+ VH ++L V +
Sbjct: 1259 EDALLGFIEMQENGVF---PDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVS 1315
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+ +++MYGKCG LEDAR V D M ++NV+ +WN++I G EA+ +F +M
Sbjct: 1316 SSLVDMYGKCGVLEDARKVFDSMVEKNVV------TWNSMIVGYVQNGLNQEAIDVFYDM 1369
Query: 142 RDRELIPDGLTVRSLLCA 159
R + P +TV S L A
Sbjct: 1370 RVEGIEPTRVTVASFLSA 1387
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A F Q IRPS + ++ C+ + SL GR +H I + V + +++
Sbjct: 1634 AILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVD 1693
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCGS+++A+ V M S +L +NA+I+ A A EA++LF ++ +
Sbjct: 1694 MYAKCGSIDEAKKVFHMM------SSKELPIYNAMISAYALHGQAVEALALFKHLQKEGI 1747
Query: 147 IPDGLTVRSLLCACTSPSNV 166
PD +T S+L AC+ V
Sbjct: 1748 EPDSITFTSILSACSHAGLV 1767
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 67/127 (52%), Gaps = 6/127 (4%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
L + N R T + ++S + +++LG++ H + + + DVV+ N I++MY KC
Sbjct: 1469 LMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCE 1528
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
++DAR V D +R DL WN ++A A + EA+ LF +M+ + P+ ++
Sbjct: 1529 RIDDARKVFDSTTER------DLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVIS 1582
Query: 153 VRSLLCA 159
S++
Sbjct: 1583 WNSVILG 1589
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 10/150 (6%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
+QN N+ A D + I P+ T A +S ++L +L G++ H + +
Sbjct: 1354 VQNGLNQE--AIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDL 1411
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D +L + I+N Y K G +EDA +V M +++V+ +WN +I+ +A++
Sbjct: 1412 DNILGSSIINFYSKVGLIEDAELVFSRMLEKDVV------TWNLLISSYVQHHQVGKALN 1465
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+ MR L D +T+ S+L A SN+
Sbjct: 1466 MCHLMRSENLRFDSVTLSSILSASAVTSNI 1495
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLE 95
+F+I P Y L+ C R+L G+++H IL + + ++ ++ Y KC E
Sbjct: 1169 DFQIGPEIYGELLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPE 1228
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
A + + RNV SW AI+ + +A+ F EM++ + PD + +
Sbjct: 1229 VAVRLFHRLRVRNVF------SWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPN 1282
Query: 156 LLCACTS 162
+L AC S
Sbjct: 1283 VLKACGS 1289
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
P+V+ N ++ + + G + +A+ + +M P+L +W +I+G+A EA+
Sbjct: 1578 PNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGF--QPNLITWTTLISGLAQSGFGYEAI 1635
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
F +M++ + P ++ S+L ACT ++ Y
Sbjct: 1636 LFFQKMQEAGIRPSIASITSVLLACTDIPSLWY 1668
>gi|302764412|ref|XP_002965627.1| hypothetical protein SELMODRAFT_85102 [Selaginella moellendorffii]
gi|300166441|gb|EFJ33047.1| hypothetical protein SELMODRAFT_85102 [Selaginella moellendorffii]
Length = 290
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 6/124 (4%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
FR TY ++ CSS ++ GR +H+ +L D+ + + +++ YGKCG LE A
Sbjct: 64 GFRAEEMTYVAVLDACSSAAAVAEGRIIHESVLDRGLSRDLRIGSALVDFYGKCGQLETA 123
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R++ E+P ++VI W A+I A + EA+++F EM ++PD +T+ S+L
Sbjct: 124 RLIFSELPIQDVI------LWTALITSYAHNGHLPEALAIFREMLLAGILPDCVTIVSVL 177
Query: 158 CACT 161
AC+
Sbjct: 178 SACS 181
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D++ +++ Y + G L AR + DEMP+RN + +W+ +I+ +N E++
Sbjct: 3 DIITSTTMVDAYAQLGDLAVARAIFDEMPERNSV------TWSVLISAYGK-NNGRESLR 55
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
LF M + +T ++L AC+S + V
Sbjct: 56 LFLRMDLEGFRAEEMTYVAVLDACSSAAAV 85
>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
Length = 770
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ ++S CS++ +L+ G ++H + S DVV+ + ++NMY KCG ++DA EM
Sbjct: 395 TFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEM 454
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P R + +W ++I+G + EA+ LF EMR + P+ +T SLL AC+
Sbjct: 455 PTRTFV------TWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACS 505
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
++ + Y L+ C + SL R VH H+ + + D+ + ++N Y +CG+ DAR +
Sbjct: 76 VQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRL 135
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
D MP+RNV+ +W A++ G S + +F EM + P T+ + L AC
Sbjct: 136 FDGMPERNVV------TWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNAC 189
Query: 161 TSPSNV 166
+ +V
Sbjct: 190 LASCDV 195
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 15/150 (10%)
Query: 15 NSQPIQNLYNEALVA-FDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK 73
NSQP L E V + + +++ + + ACL S + LG++VH + +
Sbjct: 157 NSQPALGL--EVFVEMLEMGRYPSHYTLGATLNACLASC-----DVDLGKQVHGYAIKYG 209
Query: 74 SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
++ + N + ++Y K GSL+ A +P++NVI +W +I+ A E
Sbjct: 210 AESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVI------TWTTMISACAEDEECVE 263
Query: 134 -AMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+SLF +M ++P+ T+ S++ C +
Sbjct: 264 LGLSLFIDMLMDGVMPNEFTLTSVMSLCGT 293
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 63/129 (48%), Gaps = 17/129 (13%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S C + L LG++V + ++ ++N + +Y + G ++A + ++M
Sbjct: 283 TLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQM 342
Query: 105 PQRNVIESPDLASWNAIIAGVA-----------SPSNANEAMSLFSEMRDRELIPDGLTV 153
++I +WNA+I+G A + S +A+++F +++ + PD T
Sbjct: 343 EDASII------TWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTF 396
Query: 154 RSLLCACTS 162
S+L C++
Sbjct: 397 SSILSVCSA 405
>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 800
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 76/142 (53%), Gaps = 7/142 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EA+ FD + N + T+ I CS + L+ G+ +H +++ + D+ + +
Sbjct: 485 EAIRLFDQMYLNC-LDMNEVTFLTAIQACSHMGHLEKGKWLHHKLIAYGVKKDLFIDTAL 543
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MY KCG L A V D M +R+V+ SW+A+I G + + A+SLF+EM R
Sbjct: 544 IDMYAKCGDLRIAHRVFDSMSERSVV------SWSAMIGGCGMHGDIDAAISLFAEMIQR 597
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
E+ P+ +T ++L AC+ V
Sbjct: 598 EMKPNDITFMNILSACSHSGYV 619
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
I ++ ++ C+ +L +G +VH I+ D V++ +L MYG G L +A+ V
Sbjct: 97 ISDFIFSSVLRACAGFGNLDVGEEVHGRIIKYGLDVDHVVETSLLGMYGDLGCLSNAKKV 156
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
D M R DL SW++II+ ++E + +F + +++ D +T+ S+ AC
Sbjct: 157 FDNMTTR------DLVSWSSIISCYVDNGESSEGLEMFRLLVSQDVELDSVTMLSIAGAC 210
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 76/147 (51%), Gaps = 8/147 (5%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
Q L+ EAL F +Q + + IS C+++ L LG ++H + + + D
Sbjct: 380 QGLFKEALGIFVQMQRQGQIP-DSFSLSSSISACANVGLLWLGHQIHGYAIK-RHILDEF 437
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+QN +++MY KCG ++ A ++ D I+S + +WN++I G + N+ EA+ LF
Sbjct: 438 VQNSLIDMYSKCGHVDLAYLIFDR------IQSKSVVAWNSMICGFSQIGNSLEAIRLFD 491
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNV 166
+M L + +T + + AC+ ++
Sbjct: 492 QMYLNCLDMNEVTFLTAIQACSHMGHL 518
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 8/125 (6%)
Query: 39 FRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
F++ P+ T ++S+C+ L+ G+ VH + + D L ++ Y + G L
Sbjct: 295 FKVAPNAVTIMAVLSSCAGFNLLREGKSVHCYAVKHIDLDDDSLGPALIEYYAQFGKLSY 354
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
V + +RN+I SWN +I+ AS EA+ +F +M+ + IPD ++ S
Sbjct: 355 CEKVLHTIGKRNII------SWNMLISVYASQGLFKEALGIFVQMQRQGQIPDSFSLSSS 408
Query: 157 LCACT 161
+ AC
Sbjct: 409 ISACA 413
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+E L F L + + + T + C L L+L + VH I+ + + L +
Sbjct: 182 SEGLEMFRLLVSQ-DVELDSVTMLSIAGACGELGFLRLAKSVHGCIIRQRIETRGPLNDA 240
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++ MY +C A + M R++ ASW A+I+ +A+ +F EM +
Sbjct: 241 LVLMYSRCDDFSSAERIFSNMFNRSI------ASWTAMISCYNRSRWFKQALQVFVEMLE 294
Query: 144 RELIPDGLTVRSLLCACTS 162
++ P+ +T+ ++L +C
Sbjct: 295 FKVAPNAVTIMAVLSSCAG 313
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+ Y L +C+SLR L L +H H+L + D ++ Y + G L+ +++V +
Sbjct: 2 TLYMPLFRSCTSLRPLTL---LHSHLLVTGLHHDPQASTKLIESYSQIGCLQSSKLVFE- 57
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
++PD W +I + EA+SL+++M +++ S+L AC
Sbjct: 58 -----TFQNPDSFMWAVLIKCHVWSNFCGEAISLYNKMIYKQIPISDFIFSSVLRACAGF 112
Query: 164 SNV 166
N+
Sbjct: 113 GNL 115
>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g03880, mitochondrial; Flags: Precursor
gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 10/139 (7%)
Query: 28 VAFDFLQ--NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
VA + + F +T ++ C+ L L+LG + H HI+ K D++L N ++
Sbjct: 243 VALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIV--KYDQDLILNNALV 300
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+MY KCGSLEDA V ++M +R+VI +W+ +I+G+A + EA+ LF M+
Sbjct: 301 DMYCKCGSLEDALRVFNQMKERDVI------TWSTMISGLAQNGYSQEALKLFERMKSSG 354
Query: 146 LIPDGLTVRSLLCACTSPS 164
P+ +T+ +L AC+
Sbjct: 355 TKPNYITIVGVLFACSHAG 373
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 7/144 (4%)
Query: 26 ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
A+ A D LQ++ +TY+ LI C S R++ G + H+ + +P + L N ++
Sbjct: 45 AMKAMDSLQSH-GLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLI 103
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
NMY K L DA + D+MPQRNVI SW +I+ + +A+ L M
Sbjct: 104 NMYVKFNLLNDAHQLFDQMPQRNVI------SWTTMISAYSKCKIHQKALELLVLMLRDN 157
Query: 146 LIPDGLTVRSLLCACTSPSNVLYL 169
+ P+ T S+L +C S+V L
Sbjct: 158 VRPNVYTYSSVLRSCNGMSDVRML 181
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 11/124 (8%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP+ TY+ ++ +C+ + + R +H I+ + DV +++ +++++ K G EDA
Sbjct: 158 VRPNVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDAL 214
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V DEM + D WN+II G A S ++ A+ LF M+ I + T+ S+L
Sbjct: 215 SVFDEMV------TGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLR 268
Query: 159 ACTS 162
ACT
Sbjct: 269 ACTG 272
>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
Length = 590
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 77/139 (55%), Gaps = 8/139 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
EA A + Q+ IRP A + +S C+ L +L+ GR +H ++ K DVV+Q
Sbjct: 291 EAKEALEHFQSMLRCGIRPDRVAAVGAVSACAQLGALEQGRWLHSYLEKKKVLSDVVVQT 350
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG ++ A ++ + MP+R+V+ +WN +I G+ + +A+ LF M
Sbjct: 351 ALIDMYMKCGRMDLAMLIFESMPERSVV------TWNVMIVGLGTHGYGLDAVMLFHRME 404
Query: 143 DRELIPDGLTVRSLLCACT 161
+ D L++ ++L ACT
Sbjct: 405 AERVAVDDLSLLAMLTACT 423
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+ ++ D+V N +++ Y + G +++AR + +EMP+RNVI SW+ +I G
Sbjct: 236 LFDQMTERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVI------SWSIVIDGHVRC 289
Query: 129 SNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
A EA+ F M + PD + + AC
Sbjct: 290 GEAKEALEHFQSMLRCGIRPDRVAAVGAVSAC 321
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP T+ ++ C + G VH + D+ N +++ Y + R
Sbjct: 109 VRPDAYTFPAVLKACGCAPGCRAGLLVHAEAVRRGLGADLFTVNALISFYCRILDCISGR 168
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
V DE S DL SWN+++AG A LF EM R+
Sbjct: 169 KVFDEAGG----VSRDLVSWNSMVAGYVGCGEMGLAQELFDEMPQRD 211
>gi|242094978|ref|XP_002437979.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
gi|241916202|gb|EER89346.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
Length = 657
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
QN E V L N + P+T + +S C+ L +L LG VH I + +V
Sbjct: 391 QNGLTEMAVELFQLMQELNVQPNPTTISSTLSACAQLGALSLGTWVHRIIAKENLELNVY 450
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ +++MY KCGS+ +AR + D M +NV+ SWNA+I+G EA+ L+
Sbjct: 451 VMTALIDMYAKCGSIAEARSIFDRMDNKNVV------SWNAMISGYGLHGRGAEALKLYK 504
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
M D ++P T S+L AC+
Sbjct: 505 SMLDACILPTSSTFLSVLYACS 526
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 6/125 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
+++R ST +I S L R +H ++ ++ D ++ + +Y + +E
Sbjct: 307 SDWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMES 366
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
AR + D MP++ + SWNA+I+G A A+ LF M++ + P+ T+ S
Sbjct: 367 ARSIFDAMPEKT------MESWNAMISGYAQNGLTEMAVELFQLMQELNVQPNPTTISST 420
Query: 157 LCACT 161
L AC
Sbjct: 421 LSACA 425
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 40 RIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
R+RP +T A + + + +GR VH + + + ++++Y KCG ++ A
Sbjct: 207 RVRPDSTTLASSLRAAAEASHVAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDCA 266
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R + D M E PDL ++NA+I+G + ++ LF E+ + P+ T+ +++
Sbjct: 267 RSLFDRM------EDPDLVAYNALISGYSVNGMVESSVELFKELAASDWRPNSSTLVAVI 320
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 57 RSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLA 116
R R +H +++ D + + + +Y K ++DAR V D +P SPD
Sbjct: 128 RDAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSKVDDARKVFDAVP------SPDTI 181
Query: 117 SWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCACTSPSNV 166
WN ++AG+ P + A+ F M + + PD T+ S L A S+V
Sbjct: 182 LWNTLLAGL--PGSV--ALEAFVRMVEVGRVRPDSTTLASSLRAAAEASHV 228
>gi|255553249|ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543299|gb|EEF44831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 628
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 17/145 (11%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSK------SQP 76
EAL F L+ I P+ T+ L++ C++L LQLGR+ H H+L +
Sbjct: 368 EALRLFRMLKREA---ICPTHYTFGNLLNACANLADLQLGRQAHAHVLKHGFRFQYGEES 424
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DV + N +++MY KCGS+E+ + + M +R D SWNA+I G A EA+
Sbjct: 425 DVFVGNALIDMYMKCGSVEEGCRIFENMVER------DYVSWNAMIVGYAQNGYGMEALG 478
Query: 137 LFSEMRDRELIPDGLTVRSLLCACT 161
LF +M PD +T+ LCAC+
Sbjct: 479 LFRKMLASGEKPDHVTMIGALCACS 503
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 25/142 (17%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
S +A L+ +C +SL+ R++H I+ ++ +V +QN +++ YGKCG +DAR + D+
Sbjct: 20 SPFAKLLDSCLKSKSLRDTRRIHARIIKTQFAYEVFIQNRLIDAYGKCGCFDDARKIFDQ 79
Query: 104 MPQRNV-------------------------IESPDLASWNAIIAGVASPSNANEAMSLF 138
MP++NV + PD SWN++IAG A EA++ F
Sbjct: 80 MPEKNVFSWNAIVSTLVKSGFLDEGARLFVSMPEPDQCSWNSLIAGFAQHDRFEEALNYF 139
Query: 139 SEMRDRELIPDGLTVRSLLCAC 160
+M + + + T S L AC
Sbjct: 140 VKMHRKGFVLNEYTFGSGLSAC 161
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 26/148 (17%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILS-SKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T A ++S C+SL + + G ++H ++ K + D++L N +++MY KCG + +AR V D
Sbjct: 254 TLASVVSACASLAAAKQGLEIHACVVKRDKLRDDLILSNALVDMYAKCGRINEARCVFDR 313
Query: 104 MPQRNVIESP-------------------------DLASWNAIIAGVASPSNANEAMSLF 138
MP RNV+ ++ SWNA+IAG EA+ LF
Sbjct: 314 MPIRNVVSETSMVSGYAKTASVKAARLLFTKMIERNVVSWNALIAGYTQNGENEEALRLF 373
Query: 139 SEMRDRELIPDGLTVRSLLCACTSPSNV 166
++ + P T +LL AC + +++
Sbjct: 374 RMLKREAICPTHYTFGNLLNACANLADL 401
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 76/140 (54%), Gaps = 7/140 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ EAL F + F + T+ +S C+ L+ L++G ++H +L S+ DV + +
Sbjct: 132 FEEALNYF-VKMHRKGFVLNEYTFGSGLSACAGLKDLKIGTQIHGLMLKSQFLLDVYMGS 190
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++++Y KCG ++ A+ V D M +RNV+ SWN++I + EA+ +F M
Sbjct: 191 ALIDIYSKCGFVDCAQRVFDGMMERNVV------SWNSLITCYEQNGPSREALEIFMRMM 244
Query: 143 DRELIPDGLTVRSLLCACTS 162
+ PD +T+ S++ AC S
Sbjct: 245 ESGFEPDEVTLASVVSACAS 264
>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
Length = 611
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 80/143 (55%), Gaps = 11/143 (7%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+L EALV F +Q ++P+ T ++S C+ L +L+LGR +HD+I + V
Sbjct: 218 SLPGEALVLFREMQAKG---LKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLV 274
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ +++MY KCGSLEDA V +M ES D +W+ ++ A+ EA+S+F
Sbjct: 275 KVNTALIDMYAKCGSLEDAIGVFQDM------ESRDKQAWSVMMVAYANHGYGREAISMF 328
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
EM+ + + PD +T +L AC+
Sbjct: 329 EEMKKQGMKPDDVTFLGVLYACS 351
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 41 IRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ P TY L+ C+S R+ + GR+ H + + + + ++NMY +CG + AR
Sbjct: 134 VAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAAR 193
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V+ D M V+ S+NA+I S EA+ LF EM+ + L P +T+ S+L
Sbjct: 194 VMFDRMDGECVV------SYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLS 247
Query: 159 AC 160
AC
Sbjct: 248 AC 249
>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
Length = 671
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 80/143 (55%), Gaps = 11/143 (7%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+L EALV F +Q ++P+ T ++S C+ L +L+LGR +HD+I + V
Sbjct: 218 SLPGEALVLFREMQAKG---LKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLV 274
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ +++MY KCGSLEDA V +M ES D +W+ ++ A+ EA+S+F
Sbjct: 275 KVNTALIDMYAKCGSLEDAIGVFQDM------ESRDKQAWSVMMVAYANHGYGREAISMF 328
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
EM+ + + PD +T +L AC+
Sbjct: 329 EEMKKQGMKPDDVTFLGVLYACS 351
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 41 IRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ P TY L+ C+S R+ + GR+ H + + + + ++NMY +CG + AR
Sbjct: 134 VAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAAR 193
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V+ D M V+ S+NA+I S EA+ LF EM+ + L P +T+ S+L
Sbjct: 194 VMFDRMDGECVV------SYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLS 247
Query: 159 AC 160
AC
Sbjct: 248 AC 249
>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
Length = 611
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 80/143 (55%), Gaps = 11/143 (7%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+L EALV F +Q ++P+ T ++S C+ L +L+LGR +HD+I + V
Sbjct: 218 SLPGEALVLFREMQAKG---LKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLV 274
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ +++MY KCGSLEDA V +M ES D +W+ ++ A+ EA+S+F
Sbjct: 275 KVNTALIDMYAKCGSLEDAIGVFQDM------ESRDKQAWSVMMVAYANHGYGREAISMF 328
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
EM+ + + PD +T +L AC+
Sbjct: 329 EEMKKQGMKPDDVTFLGVLYACS 351
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 41 IRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ P TY L+ C+S R+ + GR+ H + + + + ++NMY +CG + AR
Sbjct: 134 VAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAAR 193
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V+ D M V+ S+NA+I S EA+ LF EM+ + L P +T+ S+L
Sbjct: 194 VMFDRMDGECVV------SYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLS 247
Query: 159 AC 160
AC
Sbjct: 248 AC 249
>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
Length = 630
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 10/139 (7%)
Query: 28 VAFDFLQ--NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
VA + + F +T ++ C+ L L+LG + H HI+ K D++L N ++
Sbjct: 243 VALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIV--KYDQDLILNNALV 300
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+MY KCGSLEDA V ++M +R+VI +W+ +I+G+A + EA+ LF M+
Sbjct: 301 DMYCKCGSLEDALRVFNQMKERDVI------TWSTMISGLAQNGYSQEALKLFERMKSSG 354
Query: 146 LIPDGLTVRSLLCACTSPS 164
P+ +T+ +L AC+
Sbjct: 355 TKPNYITIVGVLFACSHAG 373
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 7/144 (4%)
Query: 26 ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
A+ A D LQ++ +TY+ LI C S R++ G + H+ + +P + L N ++
Sbjct: 45 AMKAMDSLQSH-GLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLI 103
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
NMY K L DA + D+MPQRNVI SW +I+ + +A+ L M
Sbjct: 104 NMYVKFNLLNDAHQLFDQMPQRNVI------SWTTMISAYSKCKIHQKALELLVLMLRDN 157
Query: 146 LIPDGLTVRSLLCACTSPSNVLYL 169
+ P+ T S+L +C S+V L
Sbjct: 158 VRPNVYTYSSVLRSCNGMSDVRML 181
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 11/124 (8%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP+ TY+ ++ +C+ + + R +H I+ + DV +++ +++++ K G EDA
Sbjct: 158 VRPNVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDAL 214
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V DEM + D WN+II G A S ++ A+ LF M+ I + T+ S+L
Sbjct: 215 SVFDEMV------TGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLR 268
Query: 159 ACTS 162
ACT
Sbjct: 269 ACTG 272
>gi|413952592|gb|AFW85241.1| hypothetical protein ZEAMMB73_384525 [Zea mays]
Length = 683
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 8/121 (6%)
Query: 42 RPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP T + +++ C+SL L+LG ++H ++ PD N ++ MY +CG L A+
Sbjct: 400 RPDHHTLSSVLAACASLAMLRLGAQLH-QLIEKSFLPDTATNNALMTMYSRCGELISAKA 458
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ M + D+ SWNA+I G NA EA+ LF EMR +++P +T SLL A
Sbjct: 459 IFGHMHTQR-----DIVSWNALIGGYEQQGNATEALRLFEEMRSAKVMPTHITFISLLSA 513
Query: 160 C 160
C
Sbjct: 514 C 514
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
PD V N ++ + + G +E AR D MP+R+ I +WN +I+G + + +
Sbjct: 335 PDAVTWNLMIRGFTQKGDVEHARGFFDRMPERSTI------TWNTMISGYEQNEDYDSTI 388
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACTS 162
LF M + PD T+ S+L AC S
Sbjct: 389 KLFQRMLEVGERPDHHTLSSVLAACAS 415
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+VV N ++ Y + G + AR + DEMP + DL SWN +IAG S EA
Sbjct: 274 NVVSWNSMMMCYIRTGDVCSARALFDEMPHK------DLVSWNTMIAGYTQASEMEEAEK 327
Query: 137 LFSEMRDRELIPDGLTVRSL 156
LF E+ D + + L +R
Sbjct: 328 LFWEVPDPDAVTWNLMIRGF 347
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
Q D V + +L Y + G +E+A+ + DEMP RN +SWN +I G + +A
Sbjct: 129 QRDAVSWSTLLGAYTRRGLMEEAQRLFDEMPHRNA------SSWNTMITGFFAVGQMRKA 182
Query: 135 MSLFSEMRDRE 145
+++F+ M D++
Sbjct: 183 LNVFAAMPDKD 193
Score = 36.2 bits (82), Expect = 4.6, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 19/113 (16%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGR-----KVHDHILSSKSQPD 77
EAL F+ +++ ++ P+ T+ L+S C + + GR VHD+ L++ +
Sbjct: 487 EALRLFEEMRSA---KVMPTHITFISLLSACGNAGLVSEGRVVFHTMVHDYGLAASVEHY 543
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN 130
L +N+ G+ G LEDA + MP +PD A W A + + N
Sbjct: 544 AAL----VNLIGRHGQLEDALELIKSMPI-----APDRAVWGAFLGACTAKKN 587
>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 11/144 (7%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
EAL F +Q +RPS + ++S C SL SL GR+VH ++ S+ D+ + +
Sbjct: 180 EALALFSLMQREG---VRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSS 236
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++ MY KCG L A+ V D S D+ WN+IIAG A +A+ +F +M
Sbjct: 237 VLITMYIKCGDLVTAKRVFDRF------SSKDIVMWNSIIAGYAQHGFGEKALEVFHDMF 290
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
+ PD +T +L AC+ V
Sbjct: 291 SSSIAPDEITFIGVLSACSYTGKV 314
Score = 44.3 bits (103), Expect = 0.019, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIE-------SPDLASWNAIIAGVASPS 129
DVV +++ G L +AR + DEMPQRNV+ D +W+ +I
Sbjct: 117 DVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKG 176
Query: 130 NANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
EA++LFS M+ + P +V S+L C S
Sbjct: 177 FELEALALFSLMQREGVRPSFPSVISVLSVCGS 209
Score = 42.0 bits (97), Expect = 0.076, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
RK+ D + + + + N +++ Y + G + +AR V D+MP+RNV+ SW A+
Sbjct: 13 ARKLFDKM----PETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVV------SWTAM 62
Query: 122 IAGVASPSNANEAMSLFSEMRDRELI 147
I G EA LF M +R ++
Sbjct: 63 IRGYVQEGLIEEAELLFWRMPERNVV 88
Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
RKV D + + +VV ++ Y + G +E+A ++ MP+RNV+ SW +
Sbjct: 44 ARKVFDKM----PERNVVSWTAMIRGYVQEGLIEEAELLFWRMPERNVV------SWTVM 93
Query: 122 IAGVASPSNANEAMSLFSEMRDRELI 147
+ G+ +EA LF M ++++
Sbjct: 94 LGGLIEDGRVDEARQLFDMMPVKDVV 119
>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
Length = 631
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 42/115 (36%), Positives = 70/115 (60%), Gaps = 7/115 (6%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
+ +IS + + L+ GR VH + + + D+ + + +++MYGKCGS+ED V EMP+
Sbjct: 264 SSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPE 323
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
RN L SWNA+I+G A + + AM+LF EM+ E + + +T+ +L AC+
Sbjct: 324 RN------LVSWNAMISGYAHQGDVDMAMTLFEEMQS-EAVANYVTLICVLSACS 371
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C+ R L LGR++H ++ S + DV + N I+++YGKC +E A +V + M
Sbjct: 161 TFCAFLNACADARCLDLGRQLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGM 220
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+RN + SW ++A +A +F
Sbjct: 221 GRRNSV------SWCTMVAACEQNDEKEKACVVF 248
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 8/146 (5%)
Query: 16 SQPIQNLY-NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS 74
S +QN Y + AL+ F ++ N + T+ C ++L G+++H L
Sbjct: 31 SGSVQNGYFSSALLYFSKMRRE-NIKPNDFTFPCAFKASTALCLPFAGKQIHAIALKLGQ 89
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
D + +MY K G +A+ + DEMP RNV A WNA I+ +A
Sbjct: 90 INDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNV------AVWNAYISNAVLDGRPGKA 143
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCAC 160
+ F E R PD +T + L AC
Sbjct: 144 IDKFIEFRRVGGEPDLITFCAFLNAC 169
>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial; Flags: Precursor
gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 822
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 71/120 (59%), Gaps = 6/120 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ + C+SL S+ LG +VH + + + V + N +++MY KCG ++ A+ V +EM
Sbjct: 451 TFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEM 510
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
E+ D+ASWNA+I+G ++ +A+ + M+DR+ P+GLT +L C++
Sbjct: 511 ------ETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAG 564
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ + L + + VH IL + D + +L +Y + G + DA V +EM
Sbjct: 249 TFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEM 308
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P+ +V+ W+ +IA NEA+ LF MR+ ++P+ T+ S+L C
Sbjct: 309 PKNDVV------PWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCA 359
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 73/166 (43%), Gaps = 20/166 (12%)
Query: 11 FTFYNSQPIQNLYNEALVAFDFLQN-------NTNFRIRPS-------TYACLISTCSSL 56
F +N P ++ + + F QN + R+R + T + +++ C+
Sbjct: 302 FKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIG 361
Query: 57 RSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLA 116
+ LG ++H ++ D+ + N ++++Y KC ++ A + E+ +N +
Sbjct: 362 KCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEV------ 415
Query: 117 SWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
SWN +I G + +A S+F E ++ +T S L AC S
Sbjct: 416 SWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACAS 461
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
Y ++ C + +H IL S D+ N +LN Y K G +DA + DEM
Sbjct: 51 AYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEM 110
Query: 105 PQRNVIESPDLA 116
P+RN + LA
Sbjct: 111 PERNNVSFVTLA 122
>gi|347954492|gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]
Length = 494
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 81/144 (56%), Gaps = 11/144 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ + EAL F +Q + ++P A + ++ C+ L +L G VH ++++ + +
Sbjct: 178 KGFHEEALAWFREMQISG---VKPDYVAIIAALAACTHLGALSFGLWVHRYVMNQDFKNN 234
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ + N ++++Y +CG +E AR V D+M +R V+ SWN++I G A+ NA+E++
Sbjct: 235 IRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVV------SWNSVIVGFAANGNAHESLVY 288
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F +M++ PD +T L AC+
Sbjct: 289 FRKMQEEGFKPDAVTFTGALTACS 312
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
V N +++ Y + G + +A + DEMP+R DL SW A+I G EA++ F
Sbjct: 135 VTWNTMIDGYMRSGQVNNAVKLFDEMPER------DLISWTAMINGFVKKGFHEEALAWF 188
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
EM+ + PD + + + L ACT
Sbjct: 189 REMQISGVKPDYVAIIAALAACT 211
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 45 TYACLISTCSSLRSLQ--LGRKVHDHILS-SKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
T+ L+S C + S LG +H + + V++ IL MY K G AR+V
Sbjct: 67 TFIALLSGCGDVSSGSEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRFGKARLVF 126
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
D M +N + +WN +I G N A+ LF EM +R+LI
Sbjct: 127 DFMEDKNSV------TWNTMIDGYMRSGQVNNAVKLFDEMPERDLI 166
>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Vitis vinifera]
Length = 545
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 85/150 (56%), Gaps = 10/150 (6%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
+QN +N FD + + PS T + L+ C+++ +L+ G+++H + + +
Sbjct: 275 VQNFHNHE--GFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEK 332
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DV +++ +++MY KCG + +A+++ MP+RN + +WN++I G A+ NEA+
Sbjct: 333 DVYVRSALVDMYAKCGYISEAKILFYMMPERNTV------TWNSLIFGYANHGYCNEAIE 386
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
LF++M + + D LT ++L AC+ V
Sbjct: 387 LFNQMEESDTKLDHLTFTAVLNACSHAGMV 416
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ Y EAL AF +Q +RP+ + ++ C L + G +H IL + + D
Sbjct: 106 RGFYEEALSAFSEMQKEG---LRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESD 162
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ + ++ MY KCG +E A V D + + DL NA+++G A +EA++L
Sbjct: 163 AYIISALIYMYSKCGHVEKACRVFDWIVDK------DLVVMNAMVSGYAQHGFVHEALNL 216
Query: 138 FSEMRDRELIPDGLTVRSLLCA 159
+M+ + P+ ++ +L+
Sbjct: 217 VQKMQQAGVKPNVVSWNTLIAG 238
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 8/149 (5%)
Query: 19 IQNLYNEALV--AFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
+Q+L N A V + + + F+ TYA I + R+L GR +H H++
Sbjct: 1 MQSLINRANVYRVYRNISTHRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLAR 60
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+++ Y +CG L +AR + D++P N+ W + A EA+S
Sbjct: 61 LTYFAAKLMSFYTECGQLSNARKLFDKIPNTNI------RRWIVLTGACARRGFYEEALS 114
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPSN 165
FSEM+ L P+ + S+L AC S+
Sbjct: 115 AFSEMQKEGLRPNQFVLPSILKACGHLSD 143
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSD--EMPQRNVIESPDLASWNAIIAGVASPSNAN 132
+P+VV N ++ + + G D +VS+ + N +E PD+ SW ++I+G + +
Sbjct: 226 KPNVVSWNTLIAGFSQVG---DKSMVSEVFRLMTANGVE-PDVVSWTSVISGFVQNFHNH 281
Query: 133 EAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
E F EM D+ P +T+ SLL ACT+ +N+
Sbjct: 282 EGFDAFKEMLDQGFCPSSVTISSLLPACTNVANL 315
>gi|347954470|gb|AEP33735.1| chlororespiratory reduction 21, partial [Olimarabidopsis pumila]
Length = 811
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 13/137 (9%)
Query: 26 ALVAF-DFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
AL+ F + L+N I P + + C +L+ + GR VH +++ + + V + +
Sbjct: 137 ALMGFVEMLEN----EIFPDNFVVPNVCKACGALQWSRFGRGVHGYVIKAGLEDCVFVAS 192
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+ +MYGKCG L+DAR V DE+P+RNV+ +WNA++ G EA+ LFS+MR
Sbjct: 193 SLADMYGKCGVLDDARKVFDEIPERNVV------AWNALMVGYVQNGMNEEAIRLFSDMR 246
Query: 143 DRELIPDGLTVRSLLCA 159
+ P +TV + L A
Sbjct: 247 KEGVEPTRVTVSTCLSA 263
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 11/142 (7%)
Query: 29 AFDFLQNNTNFRIRPSTYACLI--STCSSLRSLQLGRKVHDHILSS-KSQPDVVLQNYIL 85
A FL+ +RP+ ++ + S ++L SL GR +H +I+ + + V ++ ++
Sbjct: 510 AILFLRKMQESGLRPNAFSITVALSASANLASLHFGRSIHGYIIRNLRHSSSVSIETSLV 569
Query: 86 NMYGKCGSLEDA-RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+MY KCG + A RV ++ +L +NA+I+ A N EA++L+ + D
Sbjct: 570 DMYAKCGDINKAERVFGSKL-------YSELPLYNAMISAYALYGNVKEAIALYRSLEDM 622
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
+ PD +T SLL AC ++
Sbjct: 623 GIKPDSVTFTSLLSACNHAGDI 644
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + L+S + +L+ G++V + + D+VL + ++MY KCGS+ DA+ V D
Sbjct: 357 TLSTLMSAAARTENLKFGKEVQCYCIRHSLDTDIVLASTTMDMYAKCGSIVDAKKVFDST 416
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
++ DL WN ++A A + EA+ LF EM+ + P+ +T
Sbjct: 417 VEK------DLILWNTLLAAYAQSGLSGEALRLFYEMQLESVPPNVIT 458
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 8/127 (6%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLE 95
N RI P Y + C R L G+++H IL + + ++ ++ Y KC +LE
Sbjct: 45 NXRIGPEIYGEXLQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALE 104
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
A V+ ++ RNV SW AII A+ F EM + E+ PD V +
Sbjct: 105 XAEVIFSKLRVRNVF------SWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPN 158
Query: 156 LLCACTS 162
+ AC +
Sbjct: 159 VCKACGA 165
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 73/151 (48%), Gaps = 8/151 (5%)
Query: 19 IQNLYNE-ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+QN NE A+ F ++ R + CL S +++ ++ G++ H + + + D
Sbjct: 230 VQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCL-SASANMVGVEEGKQSHAIAIVNGLELD 288
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+L +LN Y K G +E A +V D M ++V+ +WN +I+G +A+ +
Sbjct: 289 NILGTSLLNFYCKVGLIEYAEMVFDRMFDKDVV------TWNLLISGYVQQGLVEDAIYM 342
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
MR +L D +T+ +L+ A N+ +
Sbjct: 343 SQLMRLEKLKYDCVTLSTLMSAAARTENLKF 373
>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 9/146 (6%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQ 81
Y+E L FD + T +T +++ C+ L L G+ +H +I +++ +PDV+L
Sbjct: 185 YDECLRMFDKMMGET--MPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLS 242
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+L MY KCG+++ AR V D+M R+V+ SWN++I G A++A+ +F +M
Sbjct: 243 TALLTMYAKCGAMDLARDVFDKMSNRSVV------SWNSMIMGYGMHGQADKALEMFLDM 296
Query: 142 RDRELIPDGLTVRSLLCACTSPSNVL 167
R +P+ T +L AC +L
Sbjct: 297 EKRGPMPNDATFICVLSACAHSGMIL 322
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ C + S+ G K+H IL + D+ ++N +++MY CG + DAR + +
Sbjct: 12 TFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFE-- 69
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
V DL +WN++I G A LF EM +R+L
Sbjct: 70 ----VCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLF 108
>gi|356507622|ref|XP_003522563.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g26540-like [Glycine max]
Length = 698
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
S YA CSS R++ RKV H+L+ P L N + Y KC L DAR + DE
Sbjct: 63 SLYALFFRLCSSHRAVVEARKVESHLLTFSPNPPTFLLNRAIEAYAKCHCLRDARELFDE 122
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
MPQ PD SWNA+I + NE SLF M P +T S+L +C +
Sbjct: 123 MPQ------PDGGSWNALITAYSQLGFPNETFSLFLCMTRSGFFPTEVTFASVLASCAAS 176
Query: 164 SNVL 167
S +L
Sbjct: 177 SELL 180
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T L++ + + ++G++VH +I D+ L N +L+MYGKCG+L RV ++M
Sbjct: 399 TLGLLLNVSAGISDHEMGKQVHGYIYRHGFHSDLRLSNALLDMYGKCGNLNSTRVWFNQM 458
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
R D SWNA++A + +A+++FS+M+ E P T +LL AC
Sbjct: 459 SDRR-----DRVSWNALLASYGQHQLSEQALTMFSKMQ-WETKPTQYTFVTLLLAC 508
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 7/121 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A ++++C++ L L ++VH + +V+L + ++++YGKCG + DAR + E+
Sbjct: 165 TFASVLASCAASSELLLSKQVHGLVTKFGFCGNVILGSSLVDVYGKCGVMADARRMFHEI 224
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCACTSP 163
PQ P+ +WN I+ +A EA+ +FS M + P T + L AC+S
Sbjct: 225 PQ------PNAVTWNVIVRRYLDAGDAKEAVFMFSRMFSTSAVRPMNFTFSNALVACSSV 278
Query: 164 S 164
S
Sbjct: 279 S 279
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 12/143 (8%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
L +AL F +Q T +P+ T+ L+ C++ +L LG+++H ++ D
Sbjct: 477 HQLSEQALTMFSKMQWET----KPTQYTFVTLLLACANTFTLCLGKQIHGFMIRHGFHID 532
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + ++ MY KC LE A V R+VI WN II G EA+ L
Sbjct: 533 TVTRTALVYMYCKCRCLEYAIEVLKRAVSRDVI------IWNTIIMGCVHNHKGKEALEL 586
Query: 138 FSEMRDRELIPDGLTVRSLLCAC 160
F M + PD +T + +L AC
Sbjct: 587 FVIMEAEGIKPDHVTFKGILLAC 609
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
EA+ F + + + R T++ + CSS+ +L+ G ++H ++ + D V+ +
Sbjct: 246 KEAVFMFSRMFSTSAVRPMNFTFSNALVACSSVSALREGVQIHGVVVKLGLREDNVVSSS 305
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++NMY KCG LED V D++ R DL W +I++G A EA F EM +
Sbjct: 306 LVNMYVKCGRLEDGFQVFDQLGFR------DLVCWTSIVSGYAMSGKTLEAREFFDEMPE 359
Query: 144 RELI 147
R +I
Sbjct: 360 RNVI 363
>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 663
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
QN + + L + F+ +T L+S+CS L +L G +HD+ + +VV
Sbjct: 267 QNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVV 326
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
L ++NMY +CG++ AR V D M +RNV+ +W A+I+G +AM LF+
Sbjct: 327 LGTSLINMYTRCGNVSKAREVFDSMKERNVV------TWTAMISGYGMHGYGRQAMELFT 380
Query: 140 EMRDRELIPDGLTVRSLLCAC 160
EMR P+ +T ++L AC
Sbjct: 381 EMRAYGPRPNNITFVAVLSAC 401
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +I C+ L +L+LG+++H H++ D+ +Q ++ +Y K ++ A+ V D M
Sbjct: 191 TFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAM 250
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
PQR +I +WN++I+G E++ LF M + PD T+ SLL +C+
Sbjct: 251 PQRTII------AWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCS 301
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 46/124 (37%), Positives = 69/124 (55%), Gaps = 7/124 (5%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
+N + T + ++S C+ + + LG VH K DV + +++MY KCG +
Sbjct: 303 SNLKPDRFTVSGVLSACAQMGAFNLGNWVH-RFAEKKGIWDVFIGTALIDMYAKCGFIGA 361
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
AR V D+M +RNV A+WNAI++G AS A A+ LFSEMR+ PD +T ++
Sbjct: 362 ARKVFDQMNERNV------ATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAV 415
Query: 157 LCAC 160
L AC
Sbjct: 416 LHAC 419
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 9/123 (7%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKCGSLEDA 97
+RP+ T LI C ++L+LGR +H +++ + V L+ ++N+Y KCG L+ A
Sbjct: 203 VRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGA 262
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R + DE+P++N + WN++I G + NE + L EM L PD TV +L
Sbjct: 263 RKLFDEIPEKNTV------VWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVL 316
Query: 158 CAC 160
AC
Sbjct: 317 SAC 319
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY + C+S +++ G++VH I+ + D LQ+ +LN Y CG + +A+ V DE
Sbjct: 107 TYPFVFKACASQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEF 166
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD-RELIPDGLTVRSLLCACTSP 163
++ D+ WNA+I G A ++ +F EM + +E+ P+ T+ L+ AC
Sbjct: 167 ------DAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIES 220
Query: 164 SNV 166
N+
Sbjct: 221 KNL 223
>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
Length = 837
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 13/164 (7%)
Query: 10 RFTFYNSQPIQNLYNEALVAFDFLQNNTNFR-------IRPSTYACLISTCSSLRSLQLG 62
R+ + QP+Q+ ++ N+ R I TY L C LR LG
Sbjct: 21 RWCGFLQQPVQSARCRSIFTGQVGANDVLHRLGEGSNHIDSRTYVKLFQRCMMLRDAGLG 80
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
++V DHI+ S Q ++ N ++ ++ CG++ +AR D + + V+ +WNAII
Sbjct: 81 KQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVV------TWNAII 134
Query: 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
AG A + EA +LF +M D + P +T +L AC+SP+ +
Sbjct: 135 AGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGL 178
Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 8/134 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AF I+P TY +I+ C+S L L R++H ++ + D+++ +++
Sbjct: 348 AFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVH 407
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG+++DAR V D M +R+V+ SW+A+I EA F M+ +
Sbjct: 408 MYAKCGAIKDARQVFDAMSRRDVV------SWSAMIGAYVENGCGEEAFETFHLMKRNNV 461
Query: 147 IPDGLTVRSLLCAC 160
PD +T +LL AC
Sbjct: 462 EPDVVTYINLLNAC 475
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 69/128 (53%), Gaps = 6/128 (4%)
Query: 39 FRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
F+ ++ ++ CS+ +L G+ VH +++ DV + ++ MY CGS+E AR
Sbjct: 259 FKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGAR 318
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V D+M R+V+ SW +I G A SN +A LF+ M++ + PD +T ++
Sbjct: 319 RVFDKMKVRDVV------SWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIIN 372
Query: 159 ACTSPSNV 166
AC S +++
Sbjct: 373 ACASSADL 380
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 7/137 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EA F ++ N N TY L++ C L +L LG +++ + + + + N +
Sbjct: 448 EAFETFHLMKRN-NVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNAL 506
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+NM K GS+E AR + + M QR+V+ +WN +I G + NA EA+ LF M
Sbjct: 507 INMNVKHGSIERARYIFENMVQRDVV------TWNVMIGGYSLHGNAREALDLFDRMLKE 560
Query: 145 ELIPDGLTVRSLLCACT 161
P+ +T +L AC+
Sbjct: 561 RFRPNSVTFVGVLSACS 577
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 8/137 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AF + + + PS T+ ++ CSS L+LG++ H ++ D + +++
Sbjct: 146 AFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVS 205
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY K GS++ AR V D + +R D++++N +I G A + +A LF M+
Sbjct: 206 MYVKGGSMDGARQVFDGLYKR------DVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGF 259
Query: 147 IPDGLTVRSLLCACTSP 163
P+ ++ S+L C++P
Sbjct: 260 KPNRISFLSILDGCSTP 276
Score = 42.7 bits (99), Expect = 0.053, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKS-QPD 77
+L+ A A D R RP+ T+ ++S CS ++ GR+ ++L + P
Sbjct: 542 SLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPT 601
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124
+ L ++++ G+ G L++A ++ + MP + P+ + W+ ++A
Sbjct: 602 MELYGCMVDLLGRAGELDEAELLINRMPLK-----PNSSIWSTLLAA 643
>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
Length = 721
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 77/140 (55%), Gaps = 8/140 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A N ++++ + TY+ ++ C++L +L+LG +VH + DV + N +++
Sbjct: 333 ALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALID 392
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCGS++DAR + D + R D SWNAII G + EA+ +F+ M++ +
Sbjct: 393 MYAKCGSIKDARFMFDMLDLR------DKVSWNAIICGYSMHGLGVEAIKMFNLMKETKC 446
Query: 147 IPDGLTVRSLLCACTSPSNV 166
PD LT +L AC++ +
Sbjct: 447 KPDELTFVGVLSACSNTGRL 466
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 71/137 (51%), Gaps = 7/137 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
++EAL F ++ F+ T+A ++ C L++ G+ VH +L + + D+ +
Sbjct: 128 FSEALEFFSQMRV-AGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGV 186
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+L +Y +CG +DA +MP+ +VI W+ +I+ A + +A+ +F +MR
Sbjct: 187 GLLELYTRCGDNDDAWRAFGDMPKNDVI------PWSFMISRFAQSGQSEKALEIFCQMR 240
Query: 143 DRELIPDGLTVRSLLCA 159
+IP+ T S+L A
Sbjct: 241 RAFVIPNQFTFSSVLQA 257
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ ++ + + SL L + +H H L + DV + N ++ Y KCG +E + + + +
Sbjct: 250 TFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEAL 309
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
RN + SWN II + A+SLFS M ++ +T S+L AC +
Sbjct: 310 SDRNDV------SWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACAT 361
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 7/154 (4%)
Query: 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILS 71
T + N + EA F L + + P + ++ S+ +LGR VH +L
Sbjct: 16 TLIHGYAQSNKFIEAFELFARLHGEGH-ELNPFVFTTVLKLLVSMEWAELGRIVHGCVLK 74
Query: 72 SKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNA 131
+ + +++ Y G + AR V DE I S D+ SW +IA A
Sbjct: 75 VGYGSNTFIGTALIDAYSVSGCVSMAREVFDE------ISSKDMVSWTGMIASYAENDCF 128
Query: 132 NEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165
+EA+ FS+MR P+ T +L AC N
Sbjct: 129 SEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQN 162
>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
Length = 745
Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TYA ++ CSS L G+ +H HIL SK ++ ++N ++ MY KCGSL+D++ + M
Sbjct: 172 TYAAILGACSSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTM 231
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
++V+ SWNA+IA + +A SLF M PD T S+L AC SP
Sbjct: 232 DVKDVV------SWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPK 285
Query: 165 NV 166
+
Sbjct: 286 RL 287
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 69/117 (58%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ ++ +C+SL +L+ G+ +H+ S + DV+L ++NMY KCGSL DA+ D +
Sbjct: 374 TFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGI 433
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++V+ SW+A+IA A +A EA+ L M + + + +T S+L AC+
Sbjct: 434 SNKDVV------SWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACS 484
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ ++ C+S + L+ GR +H I + D +QN +++M+ +CGSLE AR
Sbjct: 273 TFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMFTRCGSLESARRYFYS- 331
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
IE +L +WN ++A A +A+ L+ M PD T S++ +C S
Sbjct: 332 -----IEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCAS 384
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D L N I+ MYGKC S EDAR V D + QRN SW+ ++ + EA+
Sbjct: 1 DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAF------SWSILVECYVQNAMYQEALE 54
Query: 137 LFSEMRDRELIPDGLTVRSLLCACT 161
++ EM +E+ D T+ S+L ACT
Sbjct: 55 VYKEMVRKEISIDAYTLSSVLAACT 79
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 7/150 (4%)
Query: 19 IQN-LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+QN +Y EAL + + I T + +++ C+ L ++ GR V + D
Sbjct: 44 VQNAMYQEALEVYKEMVRK-EISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKD 102
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
VV+ +++++ KCG LE+A V M D+ S A+I + A+
Sbjct: 103 VVVATSLIHLFAKCGCLEEAESVFRSMGAMR-----DIISVTAMIGAYVRHGKNDLALDT 157
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
+ +MR + L PD T ++L AC+SP +L
Sbjct: 158 YWKMRSQGLEPDAFTYAAILGACSSPDFLL 187
>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 660
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 16/149 (10%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSS 72
NS P EA+V + ++ N + P + + + L +L LGR+VH
Sbjct: 267 NSMP-----KEAVVLYSQMEANG---VEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERK 318
Query: 73 KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNAN 132
K P+++L+N +++MY KCG L DAR V ++M R+V+ SW +II+
Sbjct: 319 KLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVV------SWTSIISAYGKCGQGR 372
Query: 133 EAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+A+++F+EMR+ L PD + S+L AC+
Sbjct: 373 DAVAVFAEMRNSGLNPDSIAFVSVLAACS 401
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 83/151 (54%), Gaps = 9/151 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+LY +AL+ + + F TY C++ S SL +G ++H +L ++ +
Sbjct: 99 HLYKDALLVYKTMYTQ-GFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYV 157
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N ++ MYGKC SL++A+ V DE+P R+V+ SWN++++ A N+A+ L E
Sbjct: 158 GNGLIAMYGKCKSLKEAQQVLDEIPCRDVV------SWNSMVSVYAQNGRFNDALELCRE 211
Query: 141 MRDRELIPDGLTVRSLLCACTSPS--NVLYL 169
M L P+ T+ SLL A T+ + NVLY+
Sbjct: 212 MEALNLKPNDCTMASLLPAVTNTTSDNVLYV 242
>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
multiple PPR PF|01535 repeats. ESTs gb|AV565358,
gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
thaliana]
gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
Length = 1322
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 79/141 (56%), Gaps = 11/141 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y EA+ F + I P T + +IS C+ L L++G++VH + L + DV +
Sbjct: 1013 YREAIAVFYKMMEEG---IIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYI 1069
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ +++MY KCGSLE A +V +P++N L WN+II G+A+ A EA+ +F++
Sbjct: 1070 GSALVDMYSKCGSLERALLVFFNLPKKN------LFCWNSIIEGLAAHGFAQEALKMFAK 1123
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M + P+ +T S+ ACT
Sbjct: 1124 MEMESVKPNAVTFVSVFTACT 1144
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 74 SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
S+ + N ++N Y G+LE A + ++MP +++I SW +I G + E
Sbjct: 962 SEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDII------SWTTMIKGYSQNKRYRE 1015
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCAC 160
A+++F +M + +IPD +T+ +++ AC
Sbjct: 1016 AIAVFYKMMEEGIIPDEVTMSTVISAC 1042
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ PS TY+ L+ SS S + G + HI V +Q +++ Y G + +AR
Sbjct: 867 VSPSSYTYSSLVK-ASSFAS-RFGESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIREAR 924
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
V DEMP+R+ I +W +++ + + A SL ++M ++
Sbjct: 925 KVFDEMPERDDI------AWTTMVSAYRRVLDMDSANSLANQMSEK 964
>gi|302822082|ref|XP_002992701.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
gi|300139547|gb|EFJ06286.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
Length = 941
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
+S C++L G+++H ILSS V+L N ++ MYGKCGS+E+AR D MP+R
Sbjct: 17 VSACAALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCGSVEEARNAFDRMPER-- 74
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
DL SWNA+I A +A+ L++ R PD +T SLL AC + ++ +
Sbjct: 75 ----DLISWNAMITVYAQHECGKQAIQLYAYSRLEGTKPDEVTFASLLNACFASGDLKF 129
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 72/123 (58%), Gaps = 8/123 (6%)
Query: 42 RPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP T ++ C+SLR+L G+ +H+ I++S + DV + +++ YGKC ++EDAR
Sbjct: 620 RPDAVTLISVLEACASLRALVEGKAIHERIVASGVETDVFVGTAVVSFYGKCEAVEDARQ 679
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V D + + D+ WNA+I A +A +L+ EM + ++ P+ +T+ +LL +
Sbjct: 680 VFDRILDK------DIVCWNAMIGAYAQNHCEEKAFALYLEMVENQMPPNDVTLITLLDS 733
Query: 160 CTS 162
C+S
Sbjct: 734 CSS 736
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ CS L LG+ +H+ I + + D++ N +LNMY C SL++AR+V + M
Sbjct: 524 TFISLLGACSVTGDLSLGKTIHERIRTKGLESDIITSNALLNMYTTCESLDEARLVFERM 583
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
R+V+ SW II+ A EA+ L+ M PD +T+ S+L AC S
Sbjct: 584 VFRDVV------SWTIIISAYAHAGYPLEALQLYRRMEQEFSRPDAVTLISVLEACAS 635
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 57 RSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLA 116
+SL GR+VH ++S+ D L N ++ MYG+CGSL+DAR + QRNV
Sbjct: 435 KSLTDGRQVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFQGIHQRNVF------ 488
Query: 117 SWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
SW +I+ + A+E + L M + +T SLL AC+ ++
Sbjct: 489 SWTILISLLVQNGEASEGLELLKSMDLEGTEANKITFISLLGACSVTGDL 538
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A L++ C + L+ GR +H+H L + D ++ N +++MY CGSL+DA V E
Sbjct: 113 TFASLLNACFASGDLKFGRMLHEHFLGTSFVSDQIVCNGLISMYSDCGSLDDATAVF-EW 171
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
R PD+ +W +IA A + +S+M L + +T ++L C+S
Sbjct: 172 SFR-----PDVCTWTTVIAAYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSS 224
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 70/140 (50%), Gaps = 7/140 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EA+ F+ L N + +T ++ C+++ + + GR++H +L+ + + N
Sbjct: 294 EAIKTFE-LMNLEGVKPNATTLTSVLRACATVGAHEQGRRIHALVLAGPYTQNTTVLNAA 352
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++Y KC + DA V +P ++ + SWNAI++ A +A+ L +M+
Sbjct: 353 ASLYAKCSRVADASRVFSSIPCKDAV------SWNAIVSAYAKQGLFRDAIFLSRQMQVE 406
Query: 145 ELIPDGLTVRSLLCACTSPS 164
+PD +T ++L +C+ +
Sbjct: 407 GFVPDDITFITILYSCSQSA 426
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC-GSLEDARVVSDE 103
T L+ +CSS ++ G +H + + N ++NMY KC G+LE A+ +
Sbjct: 726 TLITLLDSCSSTCKMERGSSLHREAAARGYLSHTSVVNALINMYAKCCGNLEAAQTAFES 785
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ +NV+ SW++I+A A + A +LF M ++P+ +T S+L AC+
Sbjct: 786 VASKNVV------SWSSIVAAYARNGEEDRARNLFWTMNQDGVLPNIVTFTSVLHACS 837
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 35 NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSL 94
+ R T+ ++ TCSSL L+ G+ VH L S + ++N +++MYGKC
Sbjct: 204 HQEGLRSNEITFLTVLDTCSSLEVLETGKHVHRLALGSGLDFSLRMENSLISMYGKCSRH 263
Query: 95 EDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVR 154
D + E+ R I P + SW+A IA EA+ F M + P+ T+
Sbjct: 264 PDE---AREVFLR--ISRPSVISWSAFIAAYGQHW---EAIKTFELMNLEGVKPNATTLT 315
Query: 155 SLLCACTS 162
S+L AC +
Sbjct: 316 SVLRACAT 323
>gi|302788580|ref|XP_002976059.1| hypothetical protein SELMODRAFT_104710 [Selaginella moellendorffii]
gi|300156335|gb|EFJ22964.1| hypothetical protein SELMODRAFT_104710 [Selaginella moellendorffii]
Length = 699
Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 44/121 (36%), Positives = 67/121 (55%), Gaps = 7/121 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++ + +C ++SL G+ +H ++ S + + N ++NMYGKCGSL AR V D M
Sbjct: 12 SFITALKSCVRIQSLAAGKFIHLLVIESGLLTQISVGNALVNMYGKCGSLALAREVFDGM 71
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR-DRELIPDGLTVRSLLCACTSP 163
R+VI SWNA+I A + EAM LF M+ D + PD +T +++ AC P
Sbjct: 72 DHRDVI------SWNAVITAYAQAGHCKEAMELFQAMQEDGRIEPDSVTFVAVVSACCDP 125
Query: 164 S 164
S
Sbjct: 126 S 126
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 43/147 (29%), Positives = 78/147 (53%), Gaps = 9/147 (6%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
Q+ Y+EA + F Q + P T A ++ C+ L+ GR++H ++ + +
Sbjct: 192 QDGYSEAALEL-FQQMEKEEALLPDGFTLASALAACTGPEMLEEGREIHALVIERGCESE 250
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+V+ N +++MY CG+L+DA +M QRNV+ SWNA+IA + EA +
Sbjct: 251 LVVGNALVSMYANCGTLQDALECFQKMAQRNVV------SWNAMIAAYVHHNCDKEAFRI 304
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPS 164
F +M+ + P+ +T + L C++P+
Sbjct: 305 FYQMQLEGVQPNSVTFVTFLSTCSTPA 331
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 73/143 (51%), Gaps = 11/143 (7%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQ 81
EA+ F +Q + RI P T+ ++S C +L+ ++ + DVVL
Sbjct: 94 EAMELFQAMQEDG--RIEPDSVTFVAVVSACCDPSALEAANRIFALVEERGLLDSDVVLG 151
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++NMY KCGSL+ A +V + M R+ D+ W +I+ A + A+ LF +M
Sbjct: 152 NALVNMYSKCGSLKSATMVFERMKIRD-----DVVLWTTMISVYAQDGYSEAALELFQQM 206
Query: 142 RDRE-LIPDGLTVRSLLCACTSP 163
E L+PDG T+ S L ACT P
Sbjct: 207 EKEEALLPDGFTLASALAACTGP 229
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C+ SL GR+VH+ I + ++ + N +++M+GKC SL AR +
Sbjct: 481 TWTTMLGACAGEASLAEGRRVHELIAERGADSELFVGNALVDMFGKCASLGGARQAFER- 539
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I + D +SWN ++A +A +A EA+ F M+ + P +T + AC+
Sbjct: 540 -----IRAKDASSWNVLVAALAQNGDAEEALKQFLRMQREGIKPTDVTFIVVFWACS 591
Score = 38.9 bits (89), Expect = 0.77, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 40/135 (29%)
Query: 45 TYACLISTCSS--------LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
T+ +STCS+ +R+L++ ++V D ++ N +L+ Y K G L++
Sbjct: 319 TFVTFLSTCSTPAAFEDGLIRALEVEKRVE--------SLDALVGNALLHTYAKLGKLDE 370
Query: 97 ARVVSDEMPQ---------------------RNVIE---SPDLASWNAIIAGVASPSNAN 132
+ V M + RN +E +L SWN ++
Sbjct: 371 VQRVFQRMEKQRDDVVTWNAVIEGSVRNGEFRNALELMPQKNLGSWNGLLGAYIHVGRLA 430
Query: 133 EAMSLFSEMRDRELI 147
+ LF EM +R++I
Sbjct: 431 DTRKLFEEMEERDVI 445
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 44/118 (37%), Positives = 68/118 (57%), Gaps = 8/118 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S C+++ +L LG+++ ++ Q D+ + +++MY KCGSL A+ V EM
Sbjct: 321 TLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEM 380
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR--ELIPDGLTVRSLLCAC 160
PQ+N ASWNA+I+ +AS A EA+SLF M D P+ +T LL AC
Sbjct: 381 PQKNE------ASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSAC 432
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EA+ F + F + ++ C L L+LGR V ++ + + + +
Sbjct: 200 EAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSYIGSAL 259
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MY KCG L AR + D M R+VI +WNA+I+G A A+EA+SLF M++
Sbjct: 260 ISMYAKCGDLGSARRIFDGMAARDVI------TWNAVISGYAQNGMADEAISLFHAMKED 313
Query: 145 ELIPDGLTVRSLLCACTS 162
+ + +T+ ++L AC +
Sbjct: 314 CVTENKITLTAVLSACAT 331
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 7/110 (6%)
Query: 52 TCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIE 111
+C++L L R H + D + ++ MY +CG + AR V DE+P+R
Sbjct: 125 SCANLAVLSPARAAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRR---- 180
Query: 112 SPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE-LIPDGLTVRSLLCAC 160
DL SWN++IAG A A EA+ +F EM R+ PD +++ S+L AC
Sbjct: 181 --DLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGAC 228
>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 599
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 6/142 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
QN + + L + F+ +T L+S+CS L +L G +HD+ + +VV
Sbjct: 203 QNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVV 262
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
L ++NMY +CG++ AR V D M +RNV+ +W A+I+G +AM LF+
Sbjct: 263 LGTSLINMYTRCGNVSKAREVFDSMKERNVV------TWTAMISGYGMHGYGRQAMELFT 316
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
EMR P+ +T ++L AC
Sbjct: 317 EMRAYGPRPNNITFVAVLSACA 338
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +I C+ L +L+LG+++H H++ D+ +Q ++ +Y K ++ A+ V D M
Sbjct: 127 TFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAM 186
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
PQR +I +WN++I+G E++ LF M + PD T+ SLL +C+
Sbjct: 187 PQRTII------AWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCS 237
>gi|302756495|ref|XP_002961671.1| hypothetical protein SELMODRAFT_264 [Selaginella moellendorffii]
gi|300170330|gb|EFJ36931.1| hypothetical protein SELMODRAFT_264 [Selaginella moellendorffii]
Length = 934
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 74/122 (60%), Gaps = 7/122 (5%)
Query: 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
RP T+ +++ SSL SL+ G+ VHD + + + DVV+Q ++NMYGKCGS+ +A V
Sbjct: 207 RP-TFLTVLAAISSLESLRHGKLVHDTLAEAGHEDDVVVQTALVNMYGKCGSVVEAVEVF 265
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
D MP+ +VI W+A+I+ + + E++ LF +M+ P+ +T+ S+L AC
Sbjct: 266 DRMPRHDVI------LWSAVISAHVNCAEYEESLRLFRKMQLEGNRPNNVTLVSVLSACE 319
Query: 162 SP 163
P
Sbjct: 320 GP 321
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 80/146 (54%), Gaps = 11/146 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y E+L F +Q N RP+ T ++S C ++L+ G+ +H+ ++ + + D+++
Sbjct: 289 YEESLRLFRKMQLEGN---RPNNVTLVSVLSACEGPQALETGKGIHECVVEAGYEGDLIV 345
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N I++MYGKCGSLEDA V +P+R+V+ N ++ A +++ A+ LF
Sbjct: 346 GNAIVSMYGKCGSLEDAWDVFHRVPRRSVVTC------NGMMGACAVQGDSSGALKLFRY 399
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M + D +T S LCAC+ S +
Sbjct: 400 MVHEGIEFDNITFLSALCACSGTSGL 425
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+ CS + L GR++H I S + D V+ N+++ MY KCGSL DA V ++ + +
Sbjct: 11 LLRQCSRSKDLARGRQIHASITRSSAPQDPVVGNWLIQMYLKCGSLIDASQVFYQLLETS 70
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
V+ +L +W A+IA A A+ LF +M+ PD +T+ ++ AC +P N+
Sbjct: 71 VV---NLVAWTALIAAYARNGQTKLAIRLFQQMQLEGNSPDRITLVTIFEACGNPENL 125
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ + CS L G H +L + D+ + N ++NMYGKCG +E A V +E+
Sbjct: 411 TFLSALCACSGTSGLSHGEFFHARMLECGLELDIFVANALVNMYGKCGKVEAAEHVFEEL 470
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
P++ D+ +WNA+I + +F M PD +T L AC P
Sbjct: 471 PEQ------DVRTWNAMILAYVQNEEERSGLLVFRHMMQSGYKPDEVTFAITLNACYHP 523
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 12/120 (10%)
Query: 45 TYACLISTCSSLRSLQLGRKV---HDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
T +++ C+SL +LQ G+ + DH S +Q ++ N ILNMY KCGS ++AR +
Sbjct: 723 TILTVLNVCASLPALQEGKAICVWLDHTPLSANQ---MIGNAILNMYAKCGSRDEARRIF 779
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+V++ D SWNA+I S S A +F M+ PD +T ++L C+
Sbjct: 780 ------SVMQGRDAVSWNALIGAYGSYSRGRYAFQIFQAMQLEGSTPDAVTFTTILSVCS 833
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 12/130 (9%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
L+ N+ RI T + C + +L+ G+K+H + LS S DVVL + ++ MYGKCG
Sbjct: 102 LEGNSPDRI---TLVTIFEACGNPENLEDGKKIHAY-LSCNS--DVVLGSSLITMYGKCG 155
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
SL +A ++ M + N + +WN+++ EAM L+ EM +P T
Sbjct: 156 SLSEACLMFQSMEEWNTV------AWNSLMGAFIQHDRVEEAMELYWEMLQCGFLPSRPT 209
Query: 153 VRSLLCACTS 162
++L A +S
Sbjct: 210 FLTVLAAISS 219
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
I +S + V + N +++MYG+CGS AR + D M +R D +WN +++
Sbjct: 646 IANSDVEDGVPIGNALISMYGRCGSFGKARDLFDSMAER------DAVTWNTMMSVSEQL 699
Query: 129 SNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ +++ LF +M PD +T+ ++L C S
Sbjct: 700 EHGRDSIQLFRQMLQEGTPPDKVTILTVLNVCAS 733
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 15/146 (10%)
Query: 14 YNSQPIQNLYNE----ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHI 69
+N+ + + NE L+ F + + ++ T+A ++ C R L R VH +
Sbjct: 478 WNAMILAYVQNEEERSGLLVFRHMMQ-SGYKPDEVTFAITLNACYHPRFL---RDVHS-L 532
Query: 70 LSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV------IESPDLASWNAIIA 123
+S + V+QN ++ MYG+ G LE+ V +++ Q ++ I S WN++I
Sbjct: 533 ISETGISNTVVQNALVVMYGRFGLLEEGYQVFEKLDQESITSWNVMIASCAQTCWNSVIF 592
Query: 124 GVASPSNANEAMSLFSEMRDRELIPD 149
+EA+ +F M+ + PD
Sbjct: 593 AHVQSGRDSEALKMFWRMQQAGVWPD 618
>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
Length = 599
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T +++ C+ L +L LG ++H++ + +V + N +++MY KCG LE+A V +EM
Sbjct: 229 TVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEM 288
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+R V+ SW+A+I G+A A EA+ LFS+M + P+G+T LL AC+
Sbjct: 289 EERTVV------SWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACS 339
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
V+E SW ++IAG A EA+ LF++M + + + +TV ++L AC
Sbjct: 184 HGVVEKVGFRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACA 238
>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Vitis vinifera]
Length = 635
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 4/142 (2%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F + + + T+ ++ CS+L L G++VH I + Q + + +
Sbjct: 319 EALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSAL 378
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+NMY KCG L AR + D+ + DL SWN IIA A EA++ F EMR
Sbjct: 379 INMYSKCGELGTARKMFDD----GMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKS 434
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
PD +T LL AC+ V
Sbjct: 435 GFKPDDVTYVGLLSACSHAGLV 456
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 6/80 (7%)
Query: 68 HILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127
++ + +VV N +++M +CG +E+AR + D MP+R+VI SW A+IAG++
Sbjct: 167 YLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVI------SWTAMIAGLSK 220
Query: 128 PSNANEAMSLFSEMRDRELI 147
+EA LF M +R ++
Sbjct: 221 NGRIDEARLLFDRMPERNVV 240
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +IS ++ R++ D + + K +VV ++ Y + + DA + +EM
Sbjct: 85 TWTTVISGYIKCGMIEEARRLFDRVDAKK---NVVTWTAMVGGYIRSNKISDAEKLFNEM 141
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P +NV+ SWN +I G A + AM LF +M +R ++ TV S+L C
Sbjct: 142 PNKNVV------SWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWN-TVMSMLAQC 190
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDG 150
G L AR + +EMP++NVI SW +I G + EA+ +FS M P+
Sbjct: 284 GDLRRARKLFNEMPKKNVI------SWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQ 337
Query: 151 LTVRSLLCACTS 162
T S+L AC++
Sbjct: 338 GTFVSVLGACSN 349
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 29/128 (22%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++ ++S + ++ R++ D + + DV+ ++ K G +++AR++ D M
Sbjct: 179 SWNTVMSMLAQCGRIEEARRLFDRM----PERDVISWTAMIAGLSKNGRIDEARLLFDRM 234
Query: 105 PQRNVIE-------------------------SPDLASWNAIIAGVASPSNANEAMSLFS 139
P+RNV+ DL SWN +I G+ + A LF+
Sbjct: 235 PERNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFN 294
Query: 140 EMRDRELI 147
EM + +I
Sbjct: 295 EMPKKNVI 302
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T +++ C+ L +L LG ++H++ + +V + N +++MY KCG LE+A V +EM
Sbjct: 262 TVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEM 321
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+R V+ SW+A+I G+A A EA+ LFS+M + P+G+T LL AC+
Sbjct: 322 EERTVV------SWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACS 372
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 74/150 (49%), Gaps = 27/150 (18%)
Query: 39 FRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
+ + P T+ C ++ C +L L GR +H + + ++ LQN I+++Y CG + +
Sbjct: 122 YDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGE 181
Query: 97 ARVVSDEMPQRNVIE-------------------------SPDLASWNAIIAGVASPSNA 131
AR++ ++MPQR+V+ ++ SW ++IAG A
Sbjct: 182 ARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKA 241
Query: 132 NEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
EA+ LF++M + + + +TV ++L AC
Sbjct: 242 KEAIHLFAKMEEAGVKCNEVTVVAVLAACA 271
>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
Length = 659
Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 13/143 (9%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL+AF ++ + + R S++ C I CSSL + G++ H Q D+ + + +
Sbjct: 59 EALLAFSSMRKLSLYPTR-SSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSAL 117
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM--- 141
+ MY CG LEDAR V DE+P+R D+ SW ++I G NA +A+SLF ++
Sbjct: 118 IVMYSTCGKLEDARKVFDEIPKR------DIVSWTSMIRGYDLNGNALDAVSLFKDLLVD 171
Query: 142 ---RDRELIPDGLTVRSLLCACT 161
D + D + + S++ AC+
Sbjct: 172 ENDDDDAMFLDSMGLVSVISACS 194
Score = 78.6 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+ NEA F L N T + ++ S +L++G+ +HD ++ + DV++
Sbjct: 266 MSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVG 325
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
I++MY KCG +E AR D M +NV SW A+IAG +A +A+ LF M
Sbjct: 326 TSIIDMYCKCGRVETARKAFDRMKNKNV------RSWTAMIAGYGMHGHAAKALELFPAM 379
Query: 142 RDRELIPDGLTVRSLLCACT 161
D + P+ +T S+L AC+
Sbjct: 380 IDSGVRPNYITFVSVLAACS 399
Score = 38.9 bits (89), Expect = 0.64, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
++ D+ SWN++IA +A ++ EA+ FS MR L P + + AC+S
Sbjct: 36 VDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSS 88
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS--LEDARVVSDEMPQ 106
+IS CS + + L +H ++ V + N +L+ Y K G + AR + D++
Sbjct: 189 VISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVD 248
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSLLCACT 161
+ D S+N+I++ A +NEA +F + +++ + + +T+ ++L A +
Sbjct: 249 K------DRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVS 298
>gi|302766239|ref|XP_002966540.1| hypothetical protein SELMODRAFT_61257 [Selaginella moellendorffii]
gi|300165960|gb|EFJ32567.1| hypothetical protein SELMODRAFT_61257 [Selaginella moellendorffii]
Length = 630
Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 13/125 (10%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKCG---SLEDARVVS 101
YA L+ C RSL GR+VHDHIL++ V L N ++ MY KCG SL DAR V
Sbjct: 1 YASLLRRCGISRSLADGRRVHDHILATGHFLRSVHLGNLLIQMYRKCGGTSSLADARAVF 60
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
D+MP+++V+ SW+ IIA + EA++LF M ++ P+ + + S L AC+
Sbjct: 61 DQMPKKDVV------SWSCIIAAYGQAGHCREAINLFQRM---DVEPNEMVIVSTLAACS 111
Query: 162 SPSNV 166
++
Sbjct: 112 GAKDL 116
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 8/136 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A + L+ R++P+ T+ I+ CSS L GRK+H ++ D+ +QN +++
Sbjct: 185 ALETLEGMIQARVQPNPVTFVAAITACSSREFLDRGRKIHAAVIDLGLHGDITIQNALVS 244
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY K S E+A V M RN + SWN++IA A+ + + AM LF M +
Sbjct: 245 MYAKGSSAEEALSVFQRMEDRNRV------SWNSMIAAFAASAQSCAAMGLFHGMNLEGI 298
Query: 147 IPDGLTVRSLLCACTS 162
PD ++ +L AC+S
Sbjct: 299 KPDDVSFLGVLSACSS 314
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 41 IRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I+P + L I S + + L RK+H + SS + +QN ++NMY +CGSLE+AR
Sbjct: 401 IQPDSVVLLNVIYAGSLVGDVGLARKLHARVASSSFMLKIQIQNALINMYTRCGSLEEAR 460
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V D + ++N++ + D +W++++AG A +A A+ L+ +M + PD +T S+L
Sbjct: 461 RVFDGIERKNLV-ARDTVTWSSLVAGYAHHGHAEYAILLYRDMHLEGVQPDSVTYVSILN 519
Query: 159 ACT 161
+C+
Sbjct: 520 SCS 522
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 6/113 (5%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
++ CS + L LG +H ILS + V + +LNMY KCG++E AR V D++P ++V
Sbjct: 107 LAACSGAKDLALGMAIHARILSPDLRKSVFVGTALLNMYAKCGAIEQARAVFDQIPHKDV 166
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ SW A+I A + +A+ M + P+ +T + + AC+S
Sbjct: 167 V------SWTAMITAFAQMGDCRQALETLEGMIQARVQPNPVTFVAAITACSS 213
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 67/123 (54%), Gaps = 10/123 (8%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHI--LSSKSQPDVVLQNYILNMYGKCGSLED 96
I+P ++ ++S CSS R L+ +++H + + S PD+ ++N ++ Y KCG LE
Sbjct: 298 IKPDDVSFLGVLSACSSTRCLRSCKRIHSQLELAAVHSPPDLSVENSLVTAYAKCGDLEA 357
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
A + +P +NV+ SW A++ N ++A+ L+ +M + + PD + + ++
Sbjct: 358 AERIFQRIPGKNVV------SWTAMLTAYTFHGNGSKALELYDKMVGQSIQPDSVVLLNV 411
Query: 157 LCA 159
+ A
Sbjct: 412 IYA 414
>gi|302801247|ref|XP_002982380.1| hypothetical protein SELMODRAFT_447 [Selaginella moellendorffii]
gi|300149972|gb|EFJ16625.1| hypothetical protein SELMODRAFT_447 [Selaginella moellendorffii]
Length = 730
Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 13/125 (10%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKCG---SLEDARVVS 101
YA L+ C RSL GR+VHDHIL++ V L N ++ MY KCG SL DAR V
Sbjct: 1 YASLLRRCGISRSLADGRRVHDHILATGHFLRSVHLGNLLIQMYRKCGGTSSLADARAVF 60
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
D+MP+++V+ SW+ IIA + EA++LF M ++ P+ + + S L AC+
Sbjct: 61 DQMPKKDVV------SWSCIIAAYGQAGHCREAINLFQRM---DVEPNEMVIVSTLAACS 111
Query: 162 SPSNV 166
++
Sbjct: 112 GAKDL 116
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 8/136 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A + L+ R++P+ T+ I+ CSS L GRK+H ++ D+ +QN +++
Sbjct: 185 ALETLEGMIQARVQPNPVTFVAAITACSSREFLDRGRKIHAAVIDLGLHGDITIQNALVS 244
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY K S E+A V M RN + SWN++IA A+ + + AM LF M +
Sbjct: 245 MYAKGSSAEEALSVFQRMEDRNRV------SWNSMIAAFAASAQSCSAMGLFHGMNLEGI 298
Query: 147 IPDGLTVRSLLCACTS 162
PD ++ +L AC+S
Sbjct: 299 KPDDVSFLGVLSACSS 314
Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 6/113 (5%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
++ CS + L LG +H ILS + V + +LNMY KCG++E AR V D+MP ++V
Sbjct: 107 LAACSGAKDLALGMAIHARILSPDLRKSVFVGTALLNMYAKCGAIEQARAVFDQMPHKDV 166
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ SW A+I A + +A+ M + P+ +T + + AC+S
Sbjct: 167 V------SWTAMITAFAQMGDCRQALETLEGMIQARVQPNPVTFVAAITACSS 213
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 17/130 (13%)
Query: 41 IRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I+P + L I S + + L RK+H + SS + +QN ++NMY +CGSLE+AR
Sbjct: 401 IQPDSVVLLNVIYAGSLVGDVGLARKLHARVASSSFMLKIQIQNALINMYARCGSLEEAR 460
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD---------RELIPD 149
V D + ++N L SWNA++ EA++LFSEM+ PD
Sbjct: 461 RVFDGIERKN------LVSWNAMMGSYVQHGYDEEAIALFSEMKTGNSKAMESGLRSSPD 514
Query: 150 GLTVRSLLCA 159
+ LLCA
Sbjct: 515 CIMAVILLCA 524
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 66/123 (53%), Gaps = 10/123 (8%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHI--LSSKSQPDVVLQNYILNMYGKCGSLED 96
I+P ++ ++S CSS L+ +++H + + S PD+ ++N ++ Y KCG LE
Sbjct: 298 IKPDDVSFLGVLSACSSTGCLRSCKRIHSQLELAAVHSPPDLSVENSLVTAYAKCGDLEA 357
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
A + +P +NV+ SW A++ N ++A+ L+ +M + + PD + + ++
Sbjct: 358 AERIFQRIPGKNVV------SWTAMLTAYTFHGNGSKALELYDKMVGQSIQPDSVVLLNV 411
Query: 157 LCA 159
+ A
Sbjct: 412 IYA 414
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 21/158 (13%)
Query: 19 IQNLYNEALVA-FDFLQN------NTNFRIRPSTYACLISTCS--SLRSLQLGRKVHDHI 69
+Q+ Y+E +A F ++ + R P +I C+ L L GR +H +
Sbjct: 482 VQHGYDEEAIALFSEMKTGNSKAMESGLRSSPDCIMAVILLCAHAGLGKLAEGRCIHAEL 541
Query: 70 LS------SKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIA 123
+ + S +V L N +++MY +CGS+ DA M R D +W++++A
Sbjct: 542 CAVNPEILAGSTTNVTLGNALVSMYARCGSMGDASAAFHHMRAR------DTVTWSSLVA 595
Query: 124 GVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
G A +A A+ L+ +M + PD +T S+L +C+
Sbjct: 596 GYAHHGHAEYAILLYRDMHLEGVQPDSVTYVSILNSCS 633
>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
Length = 897
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 75/135 (55%), Gaps = 8/135 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A F + P TYA ++ TC++L ++ LG+++H I+ + Q DV + + +++
Sbjct: 569 AHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVD 628
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG+++D++++ ++ P R D +WNA++ G A EA+ LF M+ +
Sbjct: 629 MYSKCGNMQDSQLMFEKAPNR------DFVTWNAMLCGYAHHGLGEEALKLFESMQLVNV 682
Query: 147 IPDGLTVRSLLCACT 161
P+ T S+L AC
Sbjct: 683 KPNHATFVSVLRACA 697
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 73/145 (50%), Gaps = 8/145 (5%)
Query: 19 IQNLYN-EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+QN N E L F +Q + S YA L +C++L +L+LG+++H H L S D
Sbjct: 258 VQNDRNVEGLELFKEMQG-VGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSD 316
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+++ L+MY KCG + DA+ V MP+ L S+NAII G A +A+
Sbjct: 317 IIVGTATLDMYAKCGRMADAQKVLSSMPK------CSLQSYNAIIVGYARSDRGFQALKS 370
Query: 138 FSEMRDRELIPDGLTVRSLLCACTS 162
F + L D +T+ L AC S
Sbjct: 371 FQLLLKTGLGFDEITLSGALNACAS 395
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 7/138 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
+AL +F L T T + ++ C+S+R GR+VH + S S ++ + N I
Sbjct: 366 QALKSFQLLLK-TGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAI 424
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
L+MYGKC +L +A + D M +R+ + SWNAIIA N E ++ F+ M
Sbjct: 425 LDMYGKCKALAEASDLFDMMERRDAV------SWNAIIAACEQNGNEEETLAHFASMIHS 478
Query: 145 ELIPDGLTVRSLLCACTS 162
+ PD T S+L AC
Sbjct: 479 RMEPDDFTYGSVLKACAG 496
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 8/129 (6%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
R+ P TY ++ C+ ++L G ++H I+ S D + +++MY KCG +E A
Sbjct: 479 RMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKA 538
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+ D Q+ ++ SWNAII+G + + +A FS M + + PD T ++L
Sbjct: 539 DKIHDRTEQKTMV------SWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVL 592
Query: 158 CACTSPSNV 166
C + + V
Sbjct: 593 DTCANLATV 601
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
++ A ++ C +L +G +VH ++ DVV + +L MY KC L+D+ V E
Sbjct: 182 ASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSE 241
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+P++N + SW+A+IAG E + LF EM+
Sbjct: 242 LPEKNWV------SWSAMIAGCVQNDRNVEGLELFKEMQ 274
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 34 QNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS 93
QN T + T++ + CS SL G++ H ++ +P + N ++ MY KC
Sbjct: 40 QNQTQPPAKIRTFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLY 99
Query: 94 LEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
L+ A V D+M R+V+ S+N+II+G AS + A F EM +R+++
Sbjct: 100 LDYACKVFDKMYLRDVV------SYNSIISGYASCGEMDIARKFFYEMPERDVV 147
>gi|222636858|gb|EEE66990.1| hypothetical protein OsJ_23896 [Oryza sativa Japonica Group]
Length = 659
Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 43/107 (40%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY ++ C+ R L LGR VH H + ++ QN +++MY KCG L AR V D M
Sbjct: 152 TYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFFQNALMSMYAKCGDLASARKVFDGM 211
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL 151
QR+V+ SWN++I+ A+ EAM LF MRD P GL
Sbjct: 212 VQRDVV------SWNSMISSYAAVGQWAEAMELFRRMRDEGTEPVGL 252
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 68/129 (52%), Gaps = 8/129 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
++P+ T ++ C+ + +LQ G+++H HI+ + +L N +++MY K G L A+
Sbjct: 362 VKPNYVTVVTYLALCARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQ 421
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V D M + D+ S+ ++IAG A+ LF +M D + PD + + ++L
Sbjct: 422 NVFDTM------DDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLS 475
Query: 159 ACTSPSNVL 167
AC+ VL
Sbjct: 476 ACSHSGLVL 484
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
++ CS + L+LG+++H + + N ++ MY +C +E AR++ +
Sbjct: 272 LNACSRVGWLRLGKEIHGLAVRMCCDQVESVSNALITMYARCKDMECARMLF------RM 325
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+E P + +WN +++ A A EA S+F EM R + P+ +TV + L C +N+
Sbjct: 326 LECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGVKPNYVTVVTYLALCARVANL 382
>gi|357455473|ref|XP_003598017.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487065|gb|AES68268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 479
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 78/146 (53%), Gaps = 13/146 (8%)
Query: 23 YNEALVAFDFL--QNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQ--P 76
YNEA+ F + Q + ++P +T +S C ++ SL GRKVH + +
Sbjct: 192 YNEAIDLFTKMVQQQHNGMELQPDHATLVVTLSACGAIGSLDFGRKVHSFVRDGVNSFGE 251
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+ + N +++MY KCG++E+A M ++NV+ SWN +I G AS N EA++
Sbjct: 252 SISVFNALVDMYAKCGAVEEAYETFSNMKRKNVV------SWNVMILGFASHGNGEEALA 305
Query: 137 LFSEMRDREL-IPDGLTVRSLLCACT 161
LF+ M + PD +T +LCAC+
Sbjct: 306 LFTRMLHENVERPDEITFLCVLCACS 331
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 13/128 (10%)
Query: 42 RPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP T++ ++ + LR + LG+++H + + ++N +++MYG +E A
Sbjct: 107 RPDNFTFSFILKIIARLRFVNLGKQLHCSLFKFGFENHTYVRNSLIHMYGMLKDIEIAHQ 166
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR-----ELIPDGLTVR 154
+ +EM Q P+L SWN+II NEA+ LF++M + EL PD T+
Sbjct: 167 LFEEMYQ------PNLVSWNSIIDCHVYCGKYNEAIDLFTKMVQQQHNGMELQPDHATLV 220
Query: 155 SLLCACTS 162
L AC +
Sbjct: 221 VTLSACGA 228
>gi|347954466|gb|AEP33733.1| chlororespiratory reduction 21, partial [Lepidium sativum]
Length = 805
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 13/144 (9%)
Query: 26 ALVAF-DFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
AL+ F + L+N + P Y + C +L GR VH ++L + V + +
Sbjct: 135 ALLGFVEMLENG----VLPDNYVVPNVCKACGALHWSWFGRGVHGYVLKAGLHDCVFVAS 190
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+ +MYGKCG L+DAR+V DE+P+RNV+ +WNA++ G EA+ L S+MR
Sbjct: 191 SLADMYGKCGVLDDARMVFDEIPERNVV------AWNALMVGYVQNGMNEEAIRLLSDMR 244
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
+ P +TV + L A + +
Sbjct: 245 KEGIEPTRVTVSTCLSASANMGGI 268
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 17/155 (10%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS-KSQPD 77
+QN +E + F + R T + +S C+ L SL GR +H +I+ + +
Sbjct: 500 VQNGCSEEAIIFLRKMQESGLRPNAFTISVALSACTHLVSLNFGRSIHGYIIRNFQHSSS 559
Query: 78 VVLQNYILNMYGKCGSLEDARVV-----SDEMPQRNVIESPDLASWNAIIAGVASPSNAN 132
V + ++++Y KCG + A V DE+P N A+I+ A N
Sbjct: 560 VSFETSLVDLYAKCGDINQAEKVFGNKLYDELPLHN-----------AMISAYALYGNVK 608
Query: 133 EAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
E+++L+ + D + PD +T SLL ACT +++
Sbjct: 609 ESITLYRRLEDMAMKPDNITFTSLLYACTHAGDIV 643
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 6/120 (5%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
N R T + L+S + ++L LG++V + + + ++VL + ++MY KCGS+ DA
Sbjct: 348 NLRYDSVTLSTLMSAAARTQNLNLGKEVQCYSIRHSFESEIVLASSTVDMYAKCGSIVDA 407
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+ V + ++ DL WN ++A A + EA+ LF +M + P+ +T S++
Sbjct: 408 KKVFESTAEK------DLILWNTLLAAYADSGLSGEALKLFYDMLLESVPPNIITWNSII 461
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 10/150 (6%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
+QN NE A L + I P+ T + +S +++ ++ G++ H + + +
Sbjct: 228 VQNGMNEE--AIRLLSDMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLEL 285
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D +L ILN Y K G +E A ++ D I D+ +WN +I+G ++AM
Sbjct: 286 DNILGTSILNFYCKVGLIEYAEMIFDR------IIGKDIVTWNLLISGYVQQGLVDDAMY 339
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+ MR L D +T+ +L+ A N+
Sbjct: 340 MCKLMRLENLRYDSVTLSTLMSAAARTQNL 369
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLE 95
N RI P Y ++ C R L G+++H IL + + + ++ +L Y KC +LE
Sbjct: 43 NVRIGPEIYGEILQGCVYERDLCTGQQIHARILKNGAFYARNEYIETKLLIFYAKCDALE 102
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
A+ + + RNV SW AII A+ F EM + ++PD V +
Sbjct: 103 VAQDLFSRLRVRNVF------SWAAIIGLKCRIGLCEGALLGFVEMLENGVLPDNYVVPN 156
Query: 156 LLCACTS 162
+ AC +
Sbjct: 157 VCKACGA 163
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
P+++ N I+ + + G +++A+ + +M + P+L SW ++ G + EA+
Sbjct: 452 PNIITWNSIILSFLRNGQVDEAKEMFLQMQSSGIF--PNLISWTTMMNGWVQNGCSEEAI 509
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACT 161
+M++ L P+ T+ L ACT
Sbjct: 510 IFLRKMQESGLRPNAFTISVALSACT 535
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 16 SQPIQN-LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS 74
S +QN + E L F LQ T+ S + ++S C+ L +L +G +H ++
Sbjct: 210 SGYVQNSCFKEGLYLFRLLQL-THVVPDESIFVSILSACAHLGALDIGIWIHRYLNRKTV 268
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+ L +L+MY KCG+LE A+ + D MP+R D+ WNA+I+G+A + A
Sbjct: 269 SLSIRLSTSLLDMYAKCGNLELAKRLFDSMPER------DIVCWNAMISGLAMHGDGASA 322
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCACT 161
+ +FSEM + PD +T ++ AC+
Sbjct: 323 LKMFSEMEKTGIKPDDITFIAVFTACS 349
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 68/168 (40%), Gaps = 31/168 (18%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
N Y V L N + P Y ++ C++LR LG+ VH + D+
Sbjct: 85 NFYGTFHVFTKMLHNG----LGPDNYTIPYVLKACAALRDCSLGKMVHGYSSKLGLVFDI 140
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVI-----------------------ESP-- 113
+ N ++ MY CG + AR V DEMP+ + + E+P
Sbjct: 141 FVGNSLMAMYSVCGDVIAARHVFDEMPRLSAVSWSVMISGYAKVGDVDSARLFFDEAPEK 200
Query: 114 DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
D W A+I+G S E + LF ++ ++PD S+L AC
Sbjct: 201 DRGIWGAMISGYVQNSCFKEGLYLFRLLQLTHVVPDESIFVSILSACA 248
>gi|302813890|ref|XP_002988630.1| hypothetical protein SELMODRAFT_128138 [Selaginella moellendorffii]
gi|300143737|gb|EFJ10426.1| hypothetical protein SELMODRAFT_128138 [Selaginella moellendorffii]
Length = 612
Score = 82.0 bits (201), Expect = 9e-14, Method: Composition-based stats.
Identities = 45/128 (35%), Positives = 71/128 (55%), Gaps = 6/128 (4%)
Query: 39 FRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
FR ++ L++ C++L L+ GRK H L+S DV ++ ++NMYGKCGSL +AR
Sbjct: 151 FRPNRASLLGLLAACATLEDLEQGRKFHATFLASGFMMDVFVETTLVNMYGKCGSLAEAR 210
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V + M ++V+ SWNA+I A + EA+ L +M + P +T S+L
Sbjct: 211 GVLEGMEVKSVV------SWNAMITAYAQHRHGREALELLKKMDLEGIPPSKVTFVSILD 264
Query: 159 ACTSPSNV 166
AC S ++
Sbjct: 265 ACASSGDL 272
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 8/107 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD-- 102
+Y+ L+ C ++L GRK+HDH+ S + D L N ++ MYGKCGSLE+AR V D
Sbjct: 19 SYSRLLRWCGEAQALAEGRKIHDHVSKSDCRADRRLANMVIGMYGKCGSLEEARRVFDTI 78
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD 149
M RN L SW+ +++ + + A+ F +M + ++PD
Sbjct: 79 AMAHRN------LFSWSEMVSACVLNGDYSGAVGFFEKMVEEGVVPD 119
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 31/151 (20%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I PS T+ ++ C+S L GR H +++ DV + N +++MYGKC SL++AR
Sbjct: 252 IPPSKVTFVSILDACASSGDLTRGRSAHSRAIATGFGGDVNVNNTLVSMYGKCASLDEAR 311
Query: 99 VVSDEMPQRNVIE-----------------------------SPDLASWNAIIAGVASPS 129
V DEMP R++++ D+ SWNA++
Sbjct: 312 KVFDEMPSRDLLDGNIVANFLINLYAKCGSLENSKCVFDGLKKKDVVSWNAMLTAYIQLD 371
Query: 130 NANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ EA+ LF M PD ++ L AC
Sbjct: 372 SPKEALKLFQAMDMEGTKPDQVSYVLALDAC 402
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
+Y + C+ + G+ H + S D ++N I+NMY +CG+L+ A + +
Sbjct: 394 SYVLALDACAGAVAPTQGKLFHSRVASQGLDSDDTVRNAIVNMYAECGNLDAANREFERI 453
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+R+V+ SW ++A A N +++ LF +M+ D + S LCA S S
Sbjct: 454 KRRDVV------SWTVMVAANAQHGNPRDSLKLFWKMQQDGTKADDV---SFLCAILSCS 504
Query: 165 N 165
+
Sbjct: 505 H 505
>gi|294462449|gb|ADE76772.1| unknown [Picea sitchensis]
Length = 232
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 79/142 (55%), Gaps = 8/142 (5%)
Query: 20 QNLY-NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
QN Y +EAL F +Q T + T+ ++ C++L +L+ G+ +H +I+ S + DV
Sbjct: 7 QNGYFDEALKLFQRMQL-TKVKPNAETFPSVLPACANLAALEPGKVLHLYIIKSGFESDV 65
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ + +++MY KC S+ DA V D M RNV+ SWNA+IA A +A+ LF
Sbjct: 66 FVGSTLIDMYAKCSSIGDASKVFDGMSTRNVV------SWNAMIAAYAIHGCGKQALDLF 119
Query: 139 SEMRDRELIPDGLTVRSLLCAC 160
+M+ + P+ +T +L AC
Sbjct: 120 EQMKHSDTSPNQVTFVGVLSAC 141
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 7/146 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N + EAL F +Q TN + T +++ C+ L +L+LG + +I +K + D+ +
Sbjct: 351 NRFKEALELFRNMQA-TNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFV 409
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+N +++MY KCG ++ A + EM QR D +W A+I G+A + +A+ +FS
Sbjct: 410 RNALIDMYFKCGDVDKAESIFREMSQR------DKFTWTAMIVGLAVNGHGEKALDMFSN 463
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M ++PD +T +L ACT V
Sbjct: 464 MLKASILPDEITYIGVLSACTHTGLV 489
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 25/141 (17%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S CS L+ L+ G+KVH ++ + K + ++VL+N +++MY CG ++ A + M
Sbjct: 242 TLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSM 301
Query: 105 PQRNVIE-------------------------SPDLASWNAIIAGVASPSNANEAMSLFS 139
R++I D SW A+I G + EA+ LF
Sbjct: 302 NNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFR 361
Query: 140 EMRDRELIPDGLTVRSLLCAC 160
M+ + PD T+ S+L AC
Sbjct: 362 NMQATNVKPDEFTMVSVLTAC 382
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 6/105 (5%)
Query: 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
+L+ GR++H H+L Q +V + ++ MY CG L+ AR V D P+ +VI +
Sbjct: 154 ALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVI------T 207
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
WN II+ E+ LF M D++++P +T+ +L AC+
Sbjct: 208 WNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSK 252
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 11/106 (10%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNM--YGKCGSLEDARVVSDEMPQ 106
L+ TC S+ LQ +VH + + VLQN ++ + G + AR + DE+P+
Sbjct: 45 LLETCESMDQLQ---QVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPE 101
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
P+L WN +I G + +SL+ EM R + PD T
Sbjct: 102 ------PNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYT 141
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 10/133 (7%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYIL 85
A D N I P TY ++S C+ + GRK + S +P++ ++
Sbjct: 457 ALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLV 516
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
++ + G L++A V + MP I++ + W A++AG ++ A + ++ E
Sbjct: 517 DLLARAGRLKEAYEVIENMP----IKANSIV-WGALLAGCRVYRESDMAEMVVKQI--LE 569
Query: 146 LIPDGLTVRSLLC 158
L PD V LLC
Sbjct: 570 LEPDNGAVYVLLC 582
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T +++ C+ L +L LG ++H++ + +V + N +++MY KCG LE+A V +EM
Sbjct: 262 TVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEM 321
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+R V+ SW+A+I G+A A EA+ LFS+M + P+G+T LL AC+
Sbjct: 322 EERTVV------SWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACS 372
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 27/151 (17%)
Query: 38 NFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
+ + P T+ C ++ C +L L GR +H + + ++ LQN I+++Y CG +
Sbjct: 121 QYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMG 180
Query: 96 DARVVSDEMPQRNVIE-------------------------SPDLASWNAIIAGVASPSN 130
+AR++ ++MPQR+V+ ++ SW ++IAG
Sbjct: 181 EARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGK 240
Query: 131 ANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
A EA+ LF++M + + + +TV ++L AC
Sbjct: 241 AKEAIHLFAKMEEAGVKCNEVTVVAVLAACA 271
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 7/146 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N + EAL F +Q TN + T +++ C+ L +L+LG + +I +K + D+ +
Sbjct: 330 NRFKEALELFRNMQA-TNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFV 388
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+N +++MY KCG ++ A + EM QR D +W A+I G+A + +A+ +FS
Sbjct: 389 RNALIDMYFKCGDVDKAESIFREMSQR------DKFTWTAMIVGLAVNGHGEKALDMFSN 442
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M ++PD +T +L ACT V
Sbjct: 443 MLKASILPDEITYIGVLSACTHTGLV 468
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 25/141 (17%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S CS L+ L+ G+KVH ++ + K + ++VL+N +++MY CG ++ A + M
Sbjct: 221 TLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSM 280
Query: 105 PQRNVIE-------------------------SPDLASWNAIIAGVASPSNANEAMSLFS 139
R++I D SW A+I G + EA+ LF
Sbjct: 281 NNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFR 340
Query: 140 EMRDRELIPDGLTVRSLLCAC 160
M+ + PD T+ S+L AC
Sbjct: 341 NMQATNVKPDEFTMVSVLTAC 361
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 6/105 (5%)
Query: 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
+L+ GR++H H+L Q +V + ++ MY CG L+ AR V D P+ +VI +
Sbjct: 133 ALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVI------T 186
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
WN II+ E+ LF M D++++P +T+ +L AC+
Sbjct: 187 WNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSK 231
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 11/106 (10%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNM--YGKCGSLEDARVVSDEMPQ 106
L+ TC S+ LQ +VH + + VLQN ++ + G + AR + DE+P+
Sbjct: 24 LLETCESMDQLQ---QVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPE 80
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
P+L WN +I G + +SL+ EM R + PD T
Sbjct: 81 ------PNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYT 120
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 10/133 (7%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYIL 85
A D N I P TY ++S C+ + GRK + S +P++ ++
Sbjct: 436 ALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLV 495
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
++ + G L++A V + MP I++ + W A++AG ++ A + ++ E
Sbjct: 496 DLLARAGRLKEAYEVIENMP----IKANSIV-WGALLAGCRVYRESDMAEMVVKQI--LE 548
Query: 146 LIPDGLTVRSLLC 158
L PD V LLC
Sbjct: 549 LEPDNGAVYVLLC 561
>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 719
Score = 81.6 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 9/146 (6%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQ 81
Y+E L FD + T +T +++ C+ L L G+ +H +I +++ +PDV+L
Sbjct: 334 YDECLRMFDKMMGET--MPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLS 391
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+L MY KCG+++ AR V D+M R+V+ SWN++I G A++A+ +F +M
Sbjct: 392 TALLTMYAKCGAMDLARDVFDKMSNRSVV------SWNSMIMGYGMHGQADKALEMFLDM 445
Query: 142 RDRELIPDGLTVRSLLCACTSPSNVL 167
R +P+ T +L AC +L
Sbjct: 446 EKRGPMPNDATFICVLSACAHSGMIL 471
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ C + S+ G K+H IL + D+ ++N +++MY CG + DAR + +
Sbjct: 161 TFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFE-- 218
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
V DL +WN++I G A LF EM +R+L
Sbjct: 219 ----VCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDL 256
>gi|255569403|ref|XP_002525669.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535105|gb|EEF36787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 494
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 75/124 (60%), Gaps = 9/124 (7%)
Query: 41 IRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I+P +T A ++S C+ L SL +G ++ ++IL++ V +Q +++M+ +CGSLE A+
Sbjct: 345 IKPNEATLATILSACADLGSLSMGEEIEEYILANGLHSSVQVQTSLIHMFCRCGSLEKAK 404
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLL 157
V + + + DLA+W+++I G A A EA SLF +M+ E I PD + S+L
Sbjct: 405 AVFERLATK------DLAAWSSMINGYAIHGMAEEAFSLFHKMQTVEGIKPDAVIYTSIL 458
Query: 158 CACT 161
AC+
Sbjct: 459 LACS 462
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 7/116 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ CS+ S++ G K+H H++ Q V + +L+MY KC L +R V DEM
Sbjct: 52 TFPLLLKACSNTNSIRDGTKIHSHLIQLGFQ-HVFVMTTLLDMYSKCYDLASSRKVFDEM 110
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P R+ + SWN+II+ +EA+S+ +MR +P T L C
Sbjct: 111 PMRSTV------SWNSIISAYCRFFLVDEAISMLQKMRLIGFVPTSTTFLCFLPIC 160
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D+ L N +LNMY K G + +AR + D M ++++I SW +I G N EA S
Sbjct: 182 DIPLTNALLNMYVKHGQVHEARTLFDMMHEKSLI------SWTTVIGGYVDFGNVREAFS 235
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
LF++MR + D + +L+ C N+L
Sbjct: 236 LFNQMR-ISMRLDFIVFITLISGCAREGNLL 265
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
Query: 32 FLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91
F Q + R+ + LIS C+ +L L VH ++ + N ++ MY KC
Sbjct: 237 FNQMRISMRLDFIVFITLISGCAREGNLLLASSVHSLLVKYGCDDKDPIDNLLVTMYSKC 296
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL 151
G L A+ D + L W ++IA +A+ LF+ + + P+
Sbjct: 297 GDLISAQRAFD------IAREKSLYLWTSMIAAYTHLGYPVQALRLFNTLLGTAIKPNEA 350
Query: 152 TVRSLLCAC 160
T+ ++L AC
Sbjct: 351 TLATILSAC 359
>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
Length = 843
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TYA ++ TC++L +++LG+++H I+ + Q D + + +++MY KCG+++D +++ ++
Sbjct: 533 TYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKA 592
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P R D +WNA++ G A EA+ +F M+ + P+ T ++L AC
Sbjct: 593 PNR------DFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRAC 642
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
+ T++ + CS ++L G++ H ++ ++ +P V + N ++ MY KC LE A V
Sbjct: 41 KKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVF 100
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
D MPQR D SWNA++ G A + A LF M +R+++
Sbjct: 101 DGMPQR------DTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVV 140
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Query: 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS 72
+NS P NL + + + +++ + + + C+ ++ G +VH + S
Sbjct: 332 LFNSLPNHNLQSYNAIIVGYARSDKGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKS 391
Query: 73 KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNAN 132
Q ++ + N IL+MYGKCG+L +A +V +EM R D SWNAIIA N
Sbjct: 392 LCQSNICVANAILDMYGKCGALVEACLVFEEMVSR------DAVSWNAIIAAHEQNGNEE 445
Query: 133 EAMSLFSEMR 142
+ +SLF R
Sbjct: 446 KTLSLFIHNR 455
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 25/173 (14%)
Query: 13 FYNSQPIQNLYNEALVAFDFLQNN--------------TNFRIRPSTYACLISTCSSLRS 58
F++S P +N + + + +QN+ + ST+A + +C+ L +
Sbjct: 231 FFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSA 290
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118
L+LG ++H H L + DVV+ L+MY KC +L DA+ + + +P N L S+
Sbjct: 291 LRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHN------LQSY 344
Query: 119 NAIIAGVASPSN--ANEAMSLFSEMRDRELIP---DGLTVRSLLCACTSPSNV 166
NAII G A + +SL R +I +GL V L SN+
Sbjct: 345 NAIIVGYARSDKGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNI 397
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 65 VHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124
+H+ I+ S+ D + +++MY KCG +E A + D + ++ V+ SWNAII+G
Sbjct: 452 IHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVV------SWNAIISG 505
Query: 125 VASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ + EA FS+M + + PD T ++L C
Sbjct: 506 FSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCA 542
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T+A ++ +CSSL G ++H + DVV + +L+MY KC L+ +
Sbjct: 175 TTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHS 234
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
MP++N + SW+AIIAG + + LF EM+ + T S+ +C
Sbjct: 235 MPEKNWV------SWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGL 288
Query: 164 S 164
S
Sbjct: 289 S 289
>gi|255578455|ref|XP_002530092.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530403|gb|EEF32291.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 718
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
S YA L CSS S+ RK+ H+++ P + L N + YGKC L+DAR + DE
Sbjct: 58 SLYASLFQLCSSTLSIVEARKIESHLITFNPTPPIFLLNRAIETYGKCECLKDARELFDE 117
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
MPQR D SWNAII A +A+ LF +M + + +T S+L +C+
Sbjct: 118 MPQR------DGGSWNAIIKAYTQCGYAEKALGLFKDMNKEGVFANEITFASVLKSCS 169
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 9/152 (5%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
I++L E + F L T I T L++ C+ + +++G++ H I +
Sbjct: 367 IRSLQWEEALDFVCLMRRTTEDIDHITLGLLLNVCAGISDVEMGKQAHGFIYRHGFSSCI 426
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
++ N +L+MYGKCG+L ARV +M Q S D SWNA++ A + +AM +F
Sbjct: 427 LVGNALLDMYGKCGNLRSARVWFYQMSQ-----SRDNISWNALLTSYARHHQSEQAMMIF 481
Query: 139 SEMRDRELIPDGLTVRSLLCACTSPSNVLYLD 170
EM+ E P T +LL AC +N+ LD
Sbjct: 482 GEMQ-WETKPSTFTFGTLLAAC---ANIFALD 509
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 12/144 (8%)
Query: 25 EALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+A++ F +Q T +PST+ L++ C+++ +L G+++H ++ + D V+
Sbjct: 476 QAMMIFGEMQWET----KPSTFTFGTLLAACANIFALDQGKEIHGFMIRNGYNLDTVISG 531
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KC L A V + R+VI WN+II G E + LF +M
Sbjct: 532 ALVDMYSKCRCLSYALTVFNRAGSRDVI------LWNSIILGCCHNGRGKEVLKLFGQME 585
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
+ PD +T +L AC +V
Sbjct: 586 KEGVKPDHVTFHGVLLACMYEGHV 609
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EA+ F F T+ R T++ + CS++R+L G ++H + K + D + + +
Sbjct: 242 EAVKMF-FKMFQTDVRPLNFTFSNALIACSAMRALNEGMQIHAFAIKIKFEEDEAVSSSL 300
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
NMY KCG LE AR++ D+ R+VI SW ++++ A EA LF +M +
Sbjct: 301 SNMYAKCGKLESARMIFDQHGSRDVI------SWTSMVSAYALSGRTREARELFEKMPEW 354
Query: 145 ELI 147
++
Sbjct: 355 SVV 357
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 65/118 (55%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A ++ +CS + L L R++H I+ +V+L + ++++YGKC + +AR++ +E
Sbjct: 160 TFASVLKSCSDVLDLSLSRQIHGLIVKCGFCGNVILGSALVDVYGKCKVMSEARLMFNE- 218
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
IE+ + +WN I+ N EA+ +F +M ++ P T + L AC++
Sbjct: 219 -----IENCNDVTWNVIVRRYLDVGNEREAVKMFFKMFQTDVRPLNFTFSNALIACSA 271
>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1724
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 12/162 (7%)
Query: 6 KTQLRFTFYNSQPIQNLY-NEALVAFDFLQ-----NNTNFRIRPSTYACLISTCSSLRSL 59
K L+ ++S + Y +E + + D L N N + +++ C++L S
Sbjct: 291 KGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASF 350
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
LG ++H L + DV + N +++MY K G +EDA+ DEM ++NVI SW
Sbjct: 351 ALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVI------SWT 404
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++I+G A + A+SL+ +M + P+ +T SLL AC+
Sbjct: 405 SLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACS 446
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 69/123 (56%), Gaps = 6/123 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A ++ CS+ L + VH I+ + +++ N ++ MYGK G + +A+ V M
Sbjct: 1151 TFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTM 1210
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
PQ PD +WNA+I G A NEA+ + +R++ + + +T+ S+L AC++P
Sbjct: 1211 PQ------PDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPD 1264
Query: 165 NVL 167
++L
Sbjct: 1265 DLL 1267
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 74/145 (51%), Gaps = 7/145 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ +A V F +++ + TY + C+SLR L +G +V I + ++ +++
Sbjct: 112 FEKAFVLFSDMRH-CGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKS 170
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++ + KCG +EDA + M +R+V+ SWNA+I G A A+++ +F M
Sbjct: 171 ALVDFHSKCGKMEDASYLFGTMMERDVV------SWNAMIGGYAVQGFADDSFCMFRSML 224
Query: 143 DRELIPDGLTVRSLLCACTSPSNVL 167
L+PD T+ S+L A ++
Sbjct: 225 RGGLVPDCYTLGSVLRASAEGGGLI 249
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
R+ PS Y ++ C ++ + G +H H++++ D+ L ++ Y K G + AR
Sbjct: 27 RLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARN 86
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V D MP+R+V+ SW A+++G + +A LFS+MR + + T S L A
Sbjct: 87 VFDGMPERSVV------SWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRA 140
Query: 160 CTS 162
CTS
Sbjct: 141 CTS 143
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 17/134 (12%)
Query: 34 QNNTNFRIRPSTYACL------ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNM 87
Q +T++ IR CL + S + S G+ +H + + N ++NM
Sbjct: 734 QQHTDYGIR-----CLNAVNFPLKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINM 788
Query: 88 YGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
Y K G++E AR V DEM RN ASW+ +++G EA+ LF +M +
Sbjct: 789 YSKFGNIEHARYVFDEMRHRNE------ASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVE 842
Query: 148 PDGLTVRSLLCACT 161
P+G V SL+ AC+
Sbjct: 843 PNGFMVASLITACS 856
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 14/140 (10%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRS----LQLGRKVHDHILSSKSQPDVV 79
NEA+ A+ ++ + P+ Y ++S + + L+ G +H HI+ + + D
Sbjct: 1232 NEAVKAYKLIRE----KGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDY 1287
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
++N ++ MY KCG L + + D + ++ I +WNA++A A EA+ +F
Sbjct: 1288 VKNSLITMYAKCGDLNSSNYIFDGLGNKSPI------TWNAMVAANAHHGCGEEALKIFG 1341
Query: 140 EMRDRELIPDGLTVRSLLCA 159
EMR+ + D + L A
Sbjct: 1342 EMRNVGVNLDQFSFSGGLAA 1361
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 7/136 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F ++N + +++ ++ ++L L+ G+++H ++ + D+ + N
Sbjct: 1335 EALKIFGEMRN-VGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAA 1393
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MYGKCG + D V +PQ I L SWN +I+ A +A F EM
Sbjct: 1394 MDMYGKCGEMHD---VLKMLPQP--INRSRL-SWNILISAFARHGCFQKARETFHEMLKL 1447
Query: 145 ELIPDGLTVRSLLCAC 160
PD +T SLL AC
Sbjct: 1448 GPKPDHVTFVSLLSAC 1463
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 12/143 (8%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTY--ACLISTCS-SLRSLQLGRKVHDHILSSKSQPD 77
LY EA+ F + + P+ + A LI+ CS S G +VH ++ + D
Sbjct: 824 GLYEEAVGLFCQMWG---LGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGD 880
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + +++ YG G + +A+ + +EMP NV+ SW +++ G + N E +++
Sbjct: 881 VYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVV------SWTSLMVGYSDSGNPGEVLNV 934
Query: 138 FSEMRDRELIPDGLTVRSLLCAC 160
+ MR + + T ++ +C
Sbjct: 935 YQRMRQEGVSGNQNTFATVTSSC 957
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A + S+C L LG +V HI+ + V + N +++M+ S+E+A V D M
Sbjct: 949 TFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHM 1008
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+ ++I SWNA+I+ A E++ F MR
Sbjct: 1009 NECDII------SWNAMISAYAHHGLCRESLRCFHWMR 1040
>gi|255591025|ref|XP_002535423.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223523164|gb|EEF26960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 563
Score = 81.6 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 74/134 (55%), Gaps = 8/134 (5%)
Query: 29 AFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A D +F ++P TY +I+ C++L ++G V +H+L D+ + N +++
Sbjct: 17 ALDLYFKMKDFNVKPDTYTFPSVINACAALGDFEIGNVVQNHVLEIGFGFDLYIGNALVD 76
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY + G L AR V +EM R D+ SWN++I+G ++ +EA+ ++ E+R L
Sbjct: 77 MYARFGDLVKARNVFEEMTHR------DIVSWNSLISGYSANGYWDEALEIYYELRIAGL 130
Query: 147 IPDGLTVRSLLCAC 160
PD T+ S+L AC
Sbjct: 131 KPDNFTLSSVLPAC 144
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+S + L +LG+++H + D+V+ N +++MY KCG+++D+ V + M
Sbjct: 336 TFVTLLSISTRLADTELGKEIHCDLAKLGFDSDLVVSNALVDMYSKCGNVKDSLKVFENM 395
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R D+ +WN IIA + A + S+MR+ ELIPD T+ +L C+
Sbjct: 396 KVR------DIVTWNTIIAACVQAEDCTLAFRMISQMRNEELIPDMGTLLGILPICS 446
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 43/124 (34%), Positives = 62/124 (50%), Gaps = 9/124 (7%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
R RP T ++ C LR L+ G+ VHD+IL S + DV N +++ Y KCG L +
Sbjct: 229 RFRPDLLTITSVLRACGLLRDLEFGKFVHDYILRSGIEFDVTASNIVIDTYAKCGDLLAS 288
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R D + R D SWN +I G + E + LF +M+ +L PD +T +LL
Sbjct: 289 RKAFDRIKCR------DSVSWNTLINGYIQSRSYGEGVKLFKKMK-MDLKPDSITFVTLL 341
Query: 158 CACT 161
T
Sbjct: 342 SIST 345
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 7/116 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + ++ C L +++ G +H + DV++ N +L+MY K G L DA+ V ++M
Sbjct: 136 TLSSVLPACGGLLAVKEGEVIHGLVEKLGMNIDVIMSNGLLSMYFKFGRLMDAQRVFNKM 195
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ D SWN +I G E++ LF EM R PD LT+ S+L AC
Sbjct: 196 VVK------DYVSWNTLICGYCQMELFEESIQLFREMVKR-FRPDLLTITSVLRAC 244
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 68/141 (48%), Gaps = 8/141 (5%)
Query: 28 VAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
+AF + N + P T ++ CS + + + G++VH + V + N ++
Sbjct: 418 LAFRMISQMRNEELIPDMGTLLGILPICSLIAAKRQGKEVHACTFKFGFESTVPVGNALI 477
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
MY KC +L+ V ++M ++V+ +W A+++ +A+ F+EM +
Sbjct: 478 EMYSKCSNLKYCIRVFEDMKTKDVV------TWTALVSAYGMYGEGKKALRAFAEMEEAG 531
Query: 146 LIPDGLTVRSLLCACTSPSNV 166
+IPD + +++ AC+ +V
Sbjct: 532 IIPDHIAFVAIIYACSHSGSV 552
>gi|242047426|ref|XP_002461459.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
gi|241924836|gb|EER97980.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
Length = 568
Score = 81.6 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 13/156 (8%)
Query: 4 NLKTQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGR 63
+L T LR +S+P L AL A +T+ TY L+ C+ L SL+ G
Sbjct: 88 SLNTVLRIAASSSRPSLAL---ALHARRLAPPDTH------TYPPLLQACARLLSLRHGE 138
Query: 64 KVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIA 123
++H + V ++N ++++YG CG E A V DE+P + +L SWN+++
Sbjct: 139 RIHAEAAKNGLATLVFVKNSLVHLYGACGLFESAHRVFDEIP----VGERNLVSWNSMLN 194
Query: 124 GVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
G A+ NE +++F EM D +PDG TV S+L A
Sbjct: 195 GFAANGRPNEVLTIFREMLDVNFMPDGFTVVSVLTA 230
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 6/138 (4%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
NE L F + + NF T +++ + + +L LGR+VH ++ + + N
Sbjct: 203 NEVLTIFREMLD-VNFMPDGFTVVSVLTASAEIGALALGRRVHVYLTKVGLVENSHVGNA 261
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++++Y KCG +EDAR V +EM R + SW ++I G+A EA+ LF M
Sbjct: 262 LIDLYAKCGGVEDARRVFEEMGARRTV-----VSWTSLIVGLAVNGFGKEALELFGIMER 316
Query: 144 RELIPDGLTVRSLLCACT 161
+L+P +T+ +L AC+
Sbjct: 317 EKLVPTEITMVGVLYACS 334
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 78/140 (55%), Gaps = 8/140 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+N++ +A +F ++P+ TY L CS+L +++ GR H ++ D +
Sbjct: 105 WNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHV 164
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ ++ MY +CG + DAR V DE+ Q+ DL SWN++I+G + +A EA+ LF E
Sbjct: 165 SHSLITMYARCGKMGDARKVFDEISQK------DLVSWNSMISGYSKMRHAGEAVGLFRE 218
Query: 141 MRDRELIPDGLTVRSLLCAC 160
M + P+ +++ S+L AC
Sbjct: 219 MMEAGFQPNEMSLVSVLGAC 238
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
F+ + ++ C L L+LG V + ++ +K + + + +++MYGKCG L
Sbjct: 222 AGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVS 281
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
AR + D M ++ D +WNA+I G A + EA+ LF +MR PD +T+ +
Sbjct: 282 ARRIFDSMKKK------DKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGI 335
Query: 157 LCACTS 162
L AC S
Sbjct: 336 LSACAS 341
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 8/124 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S C+S+ +L LG++V + Q DV + +++MY KCGSL++A V M
Sbjct: 331 TLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGM 390
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR--ELIPDGLTVRSLLCACTS 162
P +N + SWNA+I+ +A A EA++LF M + + P+ +T +L AC
Sbjct: 391 PNKNEV------SWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVH 444
Query: 163 PSNV 166
V
Sbjct: 445 AGLV 448
>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial [Vitis vinifera]
gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
Length = 1048
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY ++S C+ L L++GR++H I+ + ++ ++N +++MY KCG+LE+AR
Sbjct: 452 TYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEAR------ 505
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
Q I + D SWNAII G + +EA ++F M + PD +++ S+L C
Sbjct: 506 QQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCA 562
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 7/162 (4%)
Query: 6 KTQLRFTFYNSQPIQN-LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRK 64
K+ + +T S QN EAL + + N N R +T+A ++ CS L SL GR
Sbjct: 717 KSTILWTAIISGHTQNGCSEEALQLYQEMHRN-NARPDQATFASVLRACSILASLGDGRM 775
Query: 65 VHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124
+H I D + + +++MY KCG ++ + V +EM +N D+ SWN++I G
Sbjct: 776 IHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKN-----DVISWNSMIVG 830
Query: 125 VASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
A A A+ +F EM+ + PD +T +L AC+ V
Sbjct: 831 FAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRV 872
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 8/135 (5%)
Query: 29 AFDFLQN--NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A DF +N T + ST ++S +SL +L G VH + +V + + ++N
Sbjct: 333 AIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLIN 392
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KC +E A+ V D + +RN L WNA++ G A A++ M LFSEMR
Sbjct: 393 MYAKCEKMEAAKKVFDALDERN------LVLWNAMLGGYAQNGYASKVMKLFSEMRGCGF 446
Query: 147 IPDGLTVRSLLCACT 161
PD T S+L AC
Sbjct: 447 WPDEFTYTSILSACA 461
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TYA ++S+C+ L + LG++VH ++ + + + +++MY KCGSL DAR + D
Sbjct: 184 TYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFD-- 241
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ PD SW A+IAG EA+ +F +M+ L+PD + +++ AC
Sbjct: 242 ----AVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVG 295
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 72/117 (61%), Gaps = 7/117 (5%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
A ++S C++L++L+ G +VH ++ S Q + + +++MY KCG++E AR V MP
Sbjct: 555 ASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPS 614
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
R+V+ S NAIIAG A ++ EA+ LF EM++ L P +T SLL ACT P
Sbjct: 615 RSVV------SMNAIIAGYAQ-NDLVEAIDLFQEMQNEGLNPSEITFASLLDACTGP 664
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 63/143 (44%), Gaps = 12/143 (8%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV-VL 80
N+ + A D Q N + PS T+A L+ C+ L LGR++H I D L
Sbjct: 630 NDLVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDFL 689
Query: 81 QNYILNMYGKCGSLEDARVVSDEM--PQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+L MY DA ++ E P+ ++ W AII+G + EA+ L+
Sbjct: 690 GVSLLVMYMNSQRKTDADILFSEFQYPKSTIL-------WTAIISGHTQNGCSEEALQLY 742
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
EM PD T S+L AC+
Sbjct: 743 QEMHRNNARPDQATFASVLRACS 765
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/99 (19%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
+ +H L L + I+++Y KCG++E A +++ +R D+ +WN+++
Sbjct: 101 KTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKR------DILAWNSVL 154
Query: 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ + + + + F +++ + P+ T +L +C
Sbjct: 155 SMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCA 193
>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Brachypodium distachyon]
Length = 646
Score = 81.6 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 6/119 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P T++ LI C +L SL LG+++H +++ +V + + +++MY KCG++ AR + D
Sbjct: 274 PVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFD 333
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I+SPD+ SW A+I G A A EA+ LF M L P+ +T ++L AC+
Sbjct: 334 R------IQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACS 386
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 20/122 (16%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY--------------GKCGSLE 95
+ +C++L LG +H L S + D N +LN+Y G LE
Sbjct: 65 LKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLE 124
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
R V DEMP+++V+ SWN ++ G A EA+ L EM PD T+ S
Sbjct: 125 SVRKVFDEMPEKDVV------SWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSS 178
Query: 156 LL 157
+L
Sbjct: 179 VL 180
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
G ++H + DV + + +++MY C + + V D +P R+ I WN++
Sbjct: 192 GMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAI------LWNSM 245
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
+AG A + +EA+ LF M + P +T SL+ AC + +++L
Sbjct: 246 LAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLL 291
>gi|302823311|ref|XP_002993309.1| hypothetical protein SELMODRAFT_136851 [Selaginella moellendorffii]
gi|300138882|gb|EFJ05634.1| hypothetical protein SELMODRAFT_136851 [Selaginella moellendorffii]
Length = 254
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 9/159 (5%)
Query: 2 IRNLKTQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQL 61
IRN + N+Q EA+ F + F T LI CS+ S+
Sbjct: 3 IRNAVSWSAMIAANAQ--HGYGREAMRLFKLMDLEGEFP-HQQTIGSLIDACSADPSMAE 59
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
R +H I + + DV+L + ++NMYGK GSL+ AR V + M QRN+I SWN +
Sbjct: 60 ARIIHSVIHDNGFKLDVILSSALINMYGKYGSLDLAREVFETMEQRNII------SWNTM 113
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+A A + +EA+ +FS + ++PD T+ S L AC
Sbjct: 114 VAVYAESGHGDEALYIFSRLHLDGMVPDDATISSALAAC 152
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 78/140 (55%), Gaps = 8/140 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+N++ +A +F ++P+ TY L CS+L +++ GR H ++ D +
Sbjct: 105 WNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHV 164
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ ++ MY +CG + DAR V DE+ Q+ DL SWN++I+G + +A EA+ LF E
Sbjct: 165 SHSLITMYARCGKMGDARKVFDEISQK------DLVSWNSMISGYSKMRHAGEAVGLFRE 218
Query: 141 MRDRELIPDGLTVRSLLCAC 160
M + P+ +++ S+L AC
Sbjct: 219 MMEAGFQPNEMSLVSVLGAC 238
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
F+ + ++ C L L+LG V + ++ +K + + + +++MYGKCG L
Sbjct: 222 AGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVS 281
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
AR + D M ++ D +WNA+I G A + EA+ LF +MR PD +T+ +
Sbjct: 282 ARRIFDSMKKK------DKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGI 335
Query: 157 LCACTS 162
L AC S
Sbjct: 336 LSACAS 341
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 8/124 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S C+S+ +L LG++V + Q DV + +++MY KCGSL++A V M
Sbjct: 331 TLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGM 390
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR--ELIPDGLTVRSLLCACTS 162
P++N + SWNA+I+ +A A EA++LF M + + P+ +T +L AC
Sbjct: 391 PKKNEV------SWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVH 444
Query: 163 PSNV 166
V
Sbjct: 445 AGLV 448
>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
Length = 954
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++S C+ L +L LGR++H H++ S ++++ N ++NMY K GS ++ +V ++
Sbjct: 413 TIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEK- 471
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
IE+ DL SWN ++AG A+ F +M PDG+T ++L AC+
Sbjct: 472 -----IENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAG 526
Query: 165 NV 166
V
Sbjct: 527 LV 528
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +I C+ + S +L R VH H++ Q ++ + N ++ MYGK G ++DAR V + M
Sbjct: 137 TFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERM 196
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R+ + SWN +++G A + + A +F M L P+ +T SLL
Sbjct: 197 AVRSCV------SWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLL 243
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 66/148 (44%), Gaps = 33/148 (22%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
A ++S L + G+ +H +++ + + ++N ++ +YGK G++ AR++ E+
Sbjct: 275 AVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKT 334
Query: 107 RNVIE---------------------------------SPDLASWNAIIAGVASPSNANE 133
+N++ P++ SW+A+I G AS E
Sbjct: 335 KNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEE 394
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACT 161
A+ LF M+ ++ + +T+ S+L C
Sbjct: 395 ALELFRRMQLAKVKANSVTIASVLSVCA 422
Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+ CS L +++H I+ + S L ++++Y G + DA+ V + P
Sbjct: 40 LLQQCSKS---HLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSP--- 93
Query: 109 VIES-PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
IE +L WN+I+ + EA+ ++ MR + DG T ++ AC
Sbjct: 94 -IECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACA 146
>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 751
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 9/141 (6%)
Query: 25 EALVAFDFLQN--NTNFRIRPS-TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
E +++F FL+N + ++ + T A LI T + + L G+++H ++ P+ L
Sbjct: 54 EEIISFSFLKNLFGSGHKLSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLS 113
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N+ LN+Y KCG L+ + D+M QRN++ SW +II G A S EA+S F +M
Sbjct: 114 NHFLNLYSKCGELDYTIKLFDKMSQRNMV------SWTSIITGFAHNSRFQEALSSFCQM 167
Query: 142 RDRELIPDGLTVRSLLCACTS 162
R I + S+L ACTS
Sbjct: 168 RIEGEIATQFALSSVLQACTS 188
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ LI C++ L+ G ++H ++ + D + + +++MYGKCG + + + DE
Sbjct: 381 TFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDE- 439
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
IE+PD +WN ++ + A+ F+ M R L P+ +T +LL C+
Sbjct: 440 -----IENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCS 491
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
+ ++ C+SL ++Q G +VH ++ ++ + + + +MY KCG L DA +EMP
Sbjct: 180 SSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPC 239
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ D W ++I G + +A++ + +M ++ D + S L AC++
Sbjct: 240 K------DAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSA 289
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 14/148 (9%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ +AL A+ + + F I +S CS+L++ G+ +H IL + + + N
Sbjct: 258 FKKALTAYMKMVTDDVF-IDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGN 316
Query: 83 YILNMYGKCGSLEDA----RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ +MY K G + A ++ SD + + S AII G +A+S F
Sbjct: 317 ALTDMYSKSGDMVSASNVFQIHSDCI---------SIVSLTAIIDGYVEMDQIEKALSTF 367
Query: 139 SEMRDRELIPDGLTVRSLLCACTSPSNV 166
++R R + P+ T SL+ AC + + +
Sbjct: 368 VDLRRRGIEPNEFTFTSLIKACANQAKL 395
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 6/138 (4%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
EAL F LQ N N + T A ++ C+ L ++ LG +H +I + + +
Sbjct: 346 KEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTS 405
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+++MY KCG LE A V + +R+V W+A+IAG+A + A+ LFS+M++
Sbjct: 406 LIDMYSKCGHLEKALEVFYSVERRDVF------VWSAMIAGLAMHGHGRAAIDLFSKMQE 459
Query: 144 RELIPDGLTVRSLLCACT 161
++ P+ +T +LLCAC+
Sbjct: 460 TKVKPNAVTFTNLLCACS 477
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 27/163 (16%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F ++ N R T ++S C+ L+ GR D+I + +++L N +
Sbjct: 215 EALQLFKRMKME-NARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAM 273
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIE-------------------------SPDLASWN 119
L+MY KCGSLEDAR + D+M +++++ D+ +WN
Sbjct: 274 LDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWN 333
Query: 120 AIIAGVASPSNANEAMSLFSEMR-DRELIPDGLTVRSLLCACT 161
A+I+ EA+++F E++ ++ P+ +T+ S L AC
Sbjct: 334 ALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACA 376
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 15/157 (9%)
Query: 7 TQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRK 64
T +R + +PIQ L LV L + F P++Y +I + + SL G+
Sbjct: 100 TLIRAFASSPKPIQGL----LVFIQMLHESQRF---PNSYTFPFVIKAATEVSSLLAGQA 152
Query: 65 VHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124
+H ++ + D+ + N +++ Y G L+ A +V ++ ++ D+ SWN++I+G
Sbjct: 153 IHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEK------DIVSWNSMISG 206
Query: 125 VASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ EA+ LF M+ P+ +T+ +L AC
Sbjct: 207 FVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACA 243
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK--SQPDVVLQNYILNMYGK 90
L N + PST LI C++ + L +++H H+L + P + +
Sbjct: 20 LTANNEQKSNPSTVPILIDKCANKKHL---KQLHAHMLRTGLFFDPPSATKLFTACALSS 76
Query: 91 CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPD 149
SL+ A V D++P+ P+L +WN +I AS + + +F +M + + P+
Sbjct: 77 PSSLDYACKVFDQIPR------PNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPN 130
Query: 150 GLTVRSLLCACTSPSNVL 167
T ++ A T S++L
Sbjct: 131 SYTFPFVIKAATEVSSLL 148
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 77/139 (55%), Gaps = 11/139 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
NEALV F + + +P+ T ++S C L +L+ GR VH +I ++ Q +V +
Sbjct: 185 NEALVLF---RRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVG 241
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+++MY KCGSLEDAR+V D+ I+ D+ +WN++I G A + EA+ LF M
Sbjct: 242 TALVDMYSKCGSLEDARLVFDK------IDDKDVVAWNSMIVGYAMXGFSQEALQLFKSM 295
Query: 142 RDRELIPDGLTVRSLLCAC 160
L P +T +L AC
Sbjct: 296 CRMGLHPTNITFIGILSAC 314
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 68 HILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127
+ + + +V +L Y K G L+ ARV+ D M +R D WN +I G
Sbjct: 127 QLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEER------DGVCWNVMIDGYTQ 180
Query: 128 PSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
NEA+ LF M + P+ +TV S+L AC
Sbjct: 181 NGMPNEALVLFRRMLKAKAKPNEVTVLSVLSAC 213
>gi|225428796|ref|XP_002285135.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15690
[Vitis vinifera]
Length = 593
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+ L ++C S + L+ +KVHD L S + D+ L N +L MYG CGS+ DAR V D M
Sbjct: 251 FYALFNSCGSPKLLEEAKKVHDFFLQSTFRSDLQLNNKVLEMYGNCGSMTDARRVFDHMA 310
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
R D+ SW+ +I G A+ + ++ + L+ +MR L P+ T ++L C S
Sbjct: 311 NR------DMDSWHLMINGYANNAMGDDGLQLYEQMRKLGLEPNEQTFLAVLSTCAS 361
>gi|383130006|gb|AFG45721.1| Pinus taeda anonymous locus 0_12933_01 genomic sequence
gi|383130011|gb|AFG45726.1| Pinus taeda anonymous locus 0_12933_01 genomic sequence
gi|383130015|gb|AFG45730.1| Pinus taeda anonymous locus 0_12933_01 genomic sequence
gi|383130016|gb|AFG45731.1| Pinus taeda anonymous locus 0_12933_01 genomic sequence
gi|383130017|gb|AFG45732.1| Pinus taeda anonymous locus 0_12933_01 genomic sequence
gi|383130019|gb|AFG45734.1| Pinus taeda anonymous locus 0_12933_01 genomic sequence
gi|383130020|gb|AFG45735.1| Pinus taeda anonymous locus 0_12933_01 genomic sequence
Length = 147
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
T+ ++PSTYA L+ +C+ +L G+ +H HI D L N ++ MY +C +L D
Sbjct: 31 TSIPVKPSTYAYLLQSCTKKNALPEGKLIHAHINERAPATDTFLHNSLIMMYVRCRNLTD 90
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
AR V D MP+R D SWN +IA A EA+ +F +M+ + P+ T S+
Sbjct: 91 ARKVFDRMPER------DDFSWNVMIAAYTKHGIAEEALRMFYQMQRTGIEPNSFTFVSV 144
Query: 157 LCA 159
L A
Sbjct: 145 LPA 147
>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
Length = 742
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 75/145 (51%), Gaps = 11/145 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
EA+ AF +Q + I+P T +IS+C++L SL+ G + H L S + +
Sbjct: 361 EEAVRAFSEMQMDG---IKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVS 417
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++ +YGKCGS+EDA + DEM D SW A++ G A A E + LF +M
Sbjct: 418 NALVTLYGKCGSIEDAHRLFDEMSFH------DQVSWTALVTGYAQFGKAKETIDLFEKM 471
Query: 142 RDRELIPDGLTVRSLLCACTSPSNV 166
L PDG+T +L AC+ V
Sbjct: 472 LANGLKPDGVTFIGVLSACSRAGLV 496
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +++ C +L +L+ G+++H +I + + +V + + +++MY KC S+ A V M
Sbjct: 280 TFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRM 339
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
RN+I SW A+I G + + EA+ FSEM+ + PD T+ S++ +C
Sbjct: 340 TCRNII------SWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCA 390
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 27/149 (18%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP+ T + +I S+L LG VH +L + + +++MY K G + DAR
Sbjct: 142 VRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDAR 201
Query: 99 VVSDEMPQRNVIE-------------------------SPDLASWNAIIAGVASPSNANE 133
V EM + V+ D +W ++ G+ E
Sbjct: 202 RVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLE 261
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACTS 162
A+ +F MR + D T S+L AC +
Sbjct: 262 ALDVFRRMRAEGVGIDQYTFGSILTACGA 290
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query: 46 YACLISTCSS---LRSLQLGRKVHDHILSSKSQ-PDVVLQNYILNMYGKCGSLEDARVVS 101
YA ++S+ + +++ VH IL + Q P L N++L Y K G L AR V
Sbjct: 12 YAAILSSAAGDGGRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVF 71
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
DEMP P+L + NA+++ +A + LF+ M +R+ +
Sbjct: 72 DEMPD------PNLFTRNALLSALAHSRLVPDMERLFASMPERDAV 111
>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
Length = 1321
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 85/150 (56%), Gaps = 10/150 (6%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
+QN +N FD + + PS T + L+ C+++ +L+ G+++H + + +
Sbjct: 1051 VQNFHNHE--GFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEK 1108
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DV +++ +++MY KCG + +A+++ MP+RN + +WN++I G A+ NEA+
Sbjct: 1109 DVYVRSALVDMYAKCGYISEAKILFYMMPERNTV------TWNSLIFGYANHGYCNEAIE 1162
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
LF++M + + D LT ++L AC+ V
Sbjct: 1163 LFNQMEESDTKLDHLTFTAVLNACSHAGMV 1192
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 72/134 (53%), Gaps = 8/134 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AF N RP+ TY+ +++ C ++ ++Q G+++H H++ + + + N +L
Sbjct: 198 AFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLT 257
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
+Y KCG +E+A +V + + QRN+I SW A I G + +A+ FS MR+ +
Sbjct: 258 LYSKCGMMEEAEIVFESLRQRNII------SWTASINGFYQHGDFKKALKQFSMMRESGI 311
Query: 147 IPDGLTVRSLLCAC 160
P+ T +L +C
Sbjct: 312 EPNEFTFSIVLASC 325
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ Y EAL AF +Q +RP+ + ++ C L + G +H IL + + D
Sbjct: 882 RGFYEEALSAFSEMQKEG---LRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESD 938
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ + ++ MY KCG +E A V D + + DL NA+++G A +EA+ L
Sbjct: 939 AYIISALIYMYSKCGHVEKACRVFDWIVDK------DLVVMNAMVSGYAQHGFVHEALBL 992
Query: 138 FSEMRDRELIPDGLTVRSLLCA 159
+M+ + P+ ++ +L+
Sbjct: 993 VQKMQQAGVKPNVVSWNTLIAG 1014
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 8/149 (5%)
Query: 19 IQNLYNEALV--AFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
+Q+L N A V + + + F+ TYA I + R+L GR +H H++
Sbjct: 777 MQSLINRANVYRVYRNISTHRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLAR 836
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+++ Y +CG L +AR + D++P N+ W + A EA+S
Sbjct: 837 LTYFAAKLMSFYTECGQLSNARKLFDKIPNTNI------RRWIVLTGACARRGFYEEALS 890
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPSN 165
FSEM+ L P+ + S+L AC S+
Sbjct: 891 AFSEMQKEGLRPNQFVLPSILKACGHLSD 919
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY+ + CSS SL ++H ++ S + ++ + + ++ Y +CGSLE+A V +
Sbjct: 419 TYSNIFKACSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQ- 477
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I D+ SWN+II + + +A+ L +M + P T ++L AC+
Sbjct: 478 -----ISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACS 529
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSD--EMPQRNVIESPDLASWNAIIAGVASPSNAN 132
+P+VV N ++ + + G D +VS+ + N +E PD+ SW ++I+G + +
Sbjct: 1002 KPNVVSWNTLIAGFSQVG---DKSMVSEVFRLMTANGVE-PDVVSWTSVISGFVQNFHNH 1057
Query: 133 EAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
E F EM D+ P +T+ SLL ACT+ +N+
Sbjct: 1058 EGFDAFKEMLDQGFCPSSVTISSLLPACTNVANL 1091
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 65/142 (45%), Gaps = 10/142 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+ +AL F ++ + I P+ T++ ++++C ++ GR H ++ V +
Sbjct: 296 FKKALKQFSMMRESG---IEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFV 352
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
I++MY G +++A +M + + SWNA+IAG +AM F
Sbjct: 353 GTAIIDMYSGLGEMDEAEKQFKQMGR-----AASNVSWNALIAGYVLNEKIEKAMEAFCR 407
Query: 141 MRDRELIPDGLTVRSLLCACTS 162
M ++ + T ++ AC+S
Sbjct: 408 MVKEDVACNEFTYSNIFKACSS 429
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
+S C ++LGR+ H ++ D + +++MY KCG ++ A V D+M
Sbjct: 120 LSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMT---- 175
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
S D A+ N +I+ A +A +F ++ + P+ T ++L C + S +
Sbjct: 176 --SLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAI 230
>gi|302817788|ref|XP_002990569.1| hypothetical protein SELMODRAFT_131810 [Selaginella moellendorffii]
gi|300141737|gb|EFJ08446.1| hypothetical protein SELMODRAFT_131810 [Selaginella moellendorffii]
Length = 564
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/144 (31%), Positives = 78/144 (54%), Gaps = 9/144 (6%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
++AL F + + R T+ + CS + SL+ G++ H + S + ++L +
Sbjct: 40 DQALELFKQMVDVHGIRADRVTFVTAATACSLVGSLEEGKQFHSRFVESGLESSLILDSA 99
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++NMYG+CGS E+AR + D +P +NV+ WN +IA A + +EA+ L+ +M
Sbjct: 100 LMNMYGRCGSAEEARKIFDRIPVKNVV------CWNVMIAAYAQNGHFSEALELYYDM-- 151
Query: 144 RELIPDGLTVRSLLCACTSPSNVL 167
L PD +T ++L ACT S L
Sbjct: 152 -NLKPDRVTFLNVLHACTLESGRL 174
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 11/132 (8%)
Query: 41 IRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP A C + C+S+ +L GRK+H + + DV + ++NMYGKCG +A
Sbjct: 347 VRPDAVALVCALDACTSVENLAEGRKIHRLVEGTTMVTDVFVATAVVNMYGKCGKFAEAE 406
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V M V A+WN++I A +A +A+ L+ M PDG+T LLC
Sbjct: 407 AVFQGMKTTTV------ATWNSLIGAYAQHGHATDALKLYERMELSGTRPDGVT---LLC 457
Query: 159 ACTSPSNVLYLD 170
A + S++ LD
Sbjct: 458 ALFACSHLGLLD 469
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 10/130 (7%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
L + N + T+ ++ C+ L+ GR +H ++S+ + D + N ++NM+GKCG
Sbjct: 147 LYYDMNLKPDRVTFLNVLHACT----LESGRLIHQDVVSAGLERDKFVGNALVNMFGKCG 202
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
SL DA+ V D + R+VI SWNA+++ + EA LF M L P+ +T
Sbjct: 203 SLSDAKRVFDRIAFRDVI------SWNALMSVYIQQGHRKEAFELFKRMDKAGLQPNSVT 256
Query: 153 VRSLLCACTS 162
SLL AC+S
Sbjct: 257 YLSLLPACSS 266
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 12/140 (8%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AF+ + ++P+ TY L+ CSSL L R++H + + D + N ++
Sbjct: 238 AFELFKRMDKAGLQPNSVTYLSLLPACSSLEQL---REIHQELADQGLEQDEQVGNTLIT 294
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
Y K SLED+ V + M +R+V+ SW +I G+ A+ L+ EM +
Sbjct: 295 AYNKF-SLEDSVAVFERMKRRSVV------SWTCMIMGMVEHGYGGRALDLYREMVVEGV 347
Query: 147 IPDGLTVRSLLCACTSPSNV 166
PD + + L ACTS N+
Sbjct: 348 RPDAVALVCALDACTSVENL 367
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MYGKCGS+E+AR V N I+ SWN ++ + + ++A+ LF +M D
Sbjct: 1 MYGKCGSVEEARAVF------NSIKRSSCFSWNLMLGAYCNNGSGDQALELFKQMVDVHG 54
Query: 147 I-PDGLTVRSLLCACT 161
I D +T + AC+
Sbjct: 55 IRADRVTFVTAATACS 70
>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Vitis vinifera]
Length = 858
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 74/137 (54%), Gaps = 11/137 (8%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+AL+ F +Q N F P + ++ C SL+ + LG+ VH ++L V + +
Sbjct: 165 DALLGFIEMQENGVF---PDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSS 221
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MYGKCG LEDAR V D M ++NV+ +WN++I G EA+ +F +MR
Sbjct: 222 SLVDMYGKCGVLEDARKVFDSMVEKNVV------TWNSMIVGYVQNGLNQEAIDVFYDMR 275
Query: 143 DRELIPDGLTVRSLLCA 159
+ P +TV S L A
Sbjct: 276 VEGIEPTRVTVASFLSA 292
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 8/140 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A F Q IRPS + ++ C+ + SL GR +H I + V + +++
Sbjct: 539 AILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVD 598
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCGS+++A+ V +++ S +L +NA+I+ A A EA++LF ++ +
Sbjct: 599 MYAKCGSIDEAKKVF------HMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGI 652
Query: 147 IPDGLTVRSLLCACTSPSNV 166
PD +T S+L AC+ V
Sbjct: 653 EPDSITFTSILSACSHAGLV 672
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 67/125 (53%), Gaps = 6/125 (4%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
L + N R T + ++S + +++LG++ H + + + DVV+ N I++MY KC
Sbjct: 374 LMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCE 433
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
++DAR V D +R DL WN ++A A + EA+ LF +M+ + P+ ++
Sbjct: 434 RIDDARKVFDSTTER------DLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVIS 487
Query: 153 VRSLL 157
S++
Sbjct: 488 WNSVI 492
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 10/150 (6%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
+QN N+ A D + I P+ T A +S ++L +L G++ H + +
Sbjct: 259 VQNGLNQE--AIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDL 316
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D +L + I+N Y K G +EDA +V M +++V+ +WN +I+ +A++
Sbjct: 317 DNILGSSIINFYSKVGLIEDAELVFSRMLEKDVV------TWNLLISSYVQHHQVGKALN 370
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+ MR L D +T+ S+L A SN+
Sbjct: 371 MCHLMRSENLRFDSVTLSSILSASAVTSNI 400
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLE 95
+F+I P Y L+ C R+L G+++H IL + + ++ ++ Y KC E
Sbjct: 74 DFQIGPEIYGELLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPE 133
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
A + + RNV SW AI+ + +A+ F EM++ + PD + +
Sbjct: 134 VAVRLFHRLRVRNVF------SWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPN 187
Query: 156 LLCACTS 162
+L AC S
Sbjct: 188 VLKACGS 194
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
P+V+ N ++ + + G + +A+ + +M P+L +W +I+G+A EA+
Sbjct: 483 PNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGF--QPNLITWTTLISGLAQSGFGYEAI 540
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
F +M++ + P ++ S+L ACT ++ Y
Sbjct: 541 LFFQKMQEAGIRPSIASITSVLLACTDIPSLWY 573
>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
Length = 743
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 75/139 (53%), Gaps = 11/139 (7%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
EA+ F +Q N I P T +IS+C++L SL+ G + H L S + + N
Sbjct: 354 EAVRVFCDMQRNG---IEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSN 410
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++ +YGKCGS+ED+ + DEM R D SW A+++G A ANE + LF M
Sbjct: 411 ALITLYGKCGSIEDSNQLFDEMSFR------DEVSWTALVSGYAQFGKANETIDLFERML 464
Query: 143 DRELIPDGLTVRSLLCACT 161
+ L PD +T ++L AC+
Sbjct: 465 VQGLKPDAVTFIAVLSACS 483
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +++ C LR+L+ G+++H I+ S +V + + +++MY KC S+ A V M
Sbjct: 272 TFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRM 331
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+NV+ SW A++ G + EA+ +F +M+ + PD T+ S++ +C
Sbjct: 332 ANKNVV------SWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCA 382
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 25/161 (15%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EA+ ++ + + + T++ ++ SS + LGR++H I+ V + + +
Sbjct: 120 EAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSL 179
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVI-------------------------ESPDLASWN 119
++MY K G + A V DE+ +RNV+ + D SW
Sbjct: 180 VDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWT 239
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+I G+ EAM LF +MR + D T S+L AC
Sbjct: 240 TMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTAC 280
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 10/105 (9%)
Query: 53 CSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIES 112
C R+ +K+H I+ S + P+ L N ++N Y K G++ AR V D+MPQ
Sbjct: 15 CCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQ------ 68
Query: 113 PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
P+ SWN +++ + + + +FS M +R DG++ SL+
Sbjct: 69 PNSFSWNTMLSAYSKSGDLSTMQEIFSIMPNR----DGVSWNSLI 109
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y LI+ S L ++ R H+ QP+ N +L+ Y K G L + + MP
Sbjct: 43 YNNLINAYSKLGNITYAR----HVFDKMPQPNSFSWNTMLSAYSKSGDLSTMQEIFSIMP 98
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLF-SEMRDRELIPDGLTVRSLLCACTSPS 164
R D SWN++I+G + EA+ + S M+D L + +T ++L +S
Sbjct: 99 NR------DGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQG 152
Query: 165 NV 166
V
Sbjct: 153 CV 154
>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
Length = 746
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++ C++ CS+L +L++GR+VH I + DV +QN ++ +Y KCG + A V +
Sbjct: 175 SFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRL 234
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R ++ SW +II+G A EA+ +FSEMR + PD + + S+L A T
Sbjct: 235 VDRTIV------SWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYT 285
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 9/151 (5%)
Query: 13 FYN---SQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHI 69
F+N S ++N Y E + L + N R T I+ C+ + SL+L R + ++I
Sbjct: 342 FWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYI 401
Query: 70 LSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPS 129
S+ + DV++ +++ Y KCGS++ AR V D +P ++V+ W+A++ G
Sbjct: 402 SMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVV------VWSAMMVGYGLHG 455
Query: 130 NANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
E++ LF MR + P+ +T LL AC
Sbjct: 456 QGRESIILFHAMRQAGVSPNDVTFVGLLTAC 486
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 12/147 (8%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS 74
N QPI EAL F ++ TN R ++ + + L+ G+ +H ++
Sbjct: 252 NGQPI-----EALRIFSEMRK-TNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGL 305
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+ + L + ++Y KCG + AR+ N +E+P L WNA+I+G A EA
Sbjct: 306 ECEFDLLISLTSLYAKCGHVMVARLFF------NQVENPSLIFWNAMISGYVKNGYAEEA 359
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCACT 161
+ LF M+ + + PD +TV S + AC
Sbjct: 360 IELFRLMKSKNIRPDSITVTSSIAACA 386
>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
protein [Oryza sativa Japonica Group]
gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 751
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 75/145 (51%), Gaps = 11/145 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
EA+ AF +Q + I+P T +IS+C++L SL+ G + H L S + +
Sbjct: 361 EEAVRAFSEMQMDG---IKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVS 417
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++ +YGKCGS+EDA + DEM D SW A++ G A A E + LF +M
Sbjct: 418 NALVTLYGKCGSIEDAHRLFDEMSFH------DQVSWTALVTGYAQFGKAKETIDLFEKM 471
Query: 142 RDRELIPDGLTVRSLLCACTSPSNV 166
L PDG+T +L AC+ V
Sbjct: 472 LANGLKPDGVTFIGVLSACSRAGLV 496
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +++ C +L +L+ G+++H +I + + +V + + +++MY KC S+ A V M
Sbjct: 280 TFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRM 339
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
RN+I SW A+I G + + EA+ FSEM+ + PD T+ S++ +C
Sbjct: 340 TCRNII------SWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCA 390
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 27/149 (18%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP+ T + +I S+L LG VH +L + + +++MY K G + DAR
Sbjct: 142 VRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDAR 201
Query: 99 VVSDEMPQRNVIE-------------------------SPDLASWNAIIAGVASPSNANE 133
V EM + V+ D +W ++ G+ E
Sbjct: 202 RVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLE 261
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACTS 162
A+ +F MR + D T S+L AC +
Sbjct: 262 ALDVFRRMRAEGVGIDQYTFGSILTACGA 290
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query: 46 YACLISTCSS---LRSLQLGRKVHDHILSSKSQ-PDVVLQNYILNMYGKCGSLEDARVVS 101
YA ++S+ + +++ VH IL + Q P L N++L Y K G L AR V
Sbjct: 12 YAAILSSAAGDGGRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVF 71
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
DEMP P+L + NA+++ +A + LF+ M +R+ +
Sbjct: 72 DEMPD------PNLFTRNALLSALAHSRLVPDMERLFASMPERDAV 111
>gi|296088921|emb|CBI38481.3| unnamed protein product [Vitis vinifera]
Length = 665
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 86/173 (49%), Gaps = 17/173 (9%)
Query: 1 MIRNLKTQLRFTFYNSQPIQNLY--NEALVAFDF---------LQNNTNFRIRPSTYACL 49
++R ++++ + QP +N + +E L F L T ++ P+TYA L
Sbjct: 38 LLRRIQSETSNGSFQVQPPRNSFHLDETLKGLCFSGRVMEAVGLLCRTGLQVEPATYALL 97
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
+ C + + GR++H ++ PD L+ +L ++ K G L+ + ++ D++ ++++
Sbjct: 98 LQECIFKKEFKTGRRIHAQMIVVGYYPDEYLKTKLLILHAKTGDLDTSHILFDDLSKKSL 157
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
I SWNA+IAG E ++L+ EMR L PD T S+ AC +
Sbjct: 158 I------SWNAMIAGYVQKGLEEEGLNLYDEMRQSGLTPDQYTFASVFRACAT 204
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A + C++L +L+ G++ H ++ S+ + +VV+ + +++MY KC SL D V ++
Sbjct: 194 TFASVFRACATLATLEKGKQAHCVMIKSQIKENVVVNSALMDMYFKCSSLYDGHRVFNKS 253
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
RNVI +W A+I+G E + FS+M+ P+ +T +++ AC+
Sbjct: 254 LNRNVI------TWTALISGYGQHGRVAEVLVFFSKMKTEGFRPNYVTFLAVISACS 304
>gi|255555213|ref|XP_002518643.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542024|gb|EEF43568.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 318
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 83/149 (55%), Gaps = 13/149 (8%)
Query: 19 IQNLYN-EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+QN Y EAL F + + N R T ++S C+ + +L+LGR VH++ L K +
Sbjct: 127 VQNGYALEALCIFHLMVKDPNSRPNHVTMVSVLSACAQVGNLELGRWVHEY-LKFKGRKG 185
Query: 78 VV-----LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNAN 132
V+ L +++MY KCGSL+ A+ V +M S D+ S+NA+I G+A
Sbjct: 186 VLESNTFLATALIDMYSKCGSLDKAKEVFYQMV------SKDVVSFNAMIMGLAINGEGQ 239
Query: 133 EAMSLFSEMRDRELIPDGLTVRSLLCACT 161
EA+ LFS++++ L P+G T LL AC+
Sbjct: 240 EAVKLFSKVQELGLHPNGGTFLGLLWACS 268
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 19/158 (12%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVH-------DHILSS 72
Q+ Y+E ++ L N T + S CS+L Q+ + + D L S
Sbjct: 19 QSGYSEEVLKIFCLMVKENLEPENDTMVSVFSACSNLEICQIEKWLTVLVELNIDGNLKS 78
Query: 73 KSQPDVVLQNYILNMYGKCGSLEDARVVSDEM---PQRNVIESPDLASWNAIIAGVASPS 129
+ V N ++ +YGK G +E +R D++ +R+V+ WN++I
Sbjct: 79 STCDKV--NNVLVYLYGKLGKIEKSRERFDDISDSGKRSVL------PWNSMINAYVQNG 130
Query: 130 NANEAMSLFSEM-RDRELIPDGLTVRSLLCACTSPSNV 166
A EA+ +F M +D P+ +T+ S+L AC N+
Sbjct: 131 YALEALCIFHLMVKDPNSRPNHVTMVSVLSACAQVGNL 168
>gi|195615078|gb|ACG29369.1| pentatricopeptide repeat protein PPR1106-17 [Zea mays]
gi|414868049|tpg|DAA46606.1| TPA: pentatricopeptide repeat protein PPR1106-17 [Zea mays]
Length = 618
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
FR T + C+ ++L+ G+++H I+ + D+ + + ++ MY +CG + DA
Sbjct: 285 GFRPNEFTVCSALKACAEEKALRFGKQLHGAIVKKLYKYDIHVGSALVTMYARCGEVFDA 344
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+ V D+MP+RN I +W ++I+G A EA+ LF +M+ R + + LT+ SLL
Sbjct: 345 QTVFDKMPRRNTI------TWTSMISGYAQSGCGEEAVLLFRKMKMRRVFVNHLTIVSLL 398
Query: 158 CACTSPSNVLY 168
AC S ++ +
Sbjct: 399 SACGSMQSIYH 409
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY+ + C+ L +LQ GR++H + +++ +V + +++MY +CG +++AR V D M
Sbjct: 494 TYSSALKACARLEALQDGRRIHGVVNKTQAFSNVFVGCSLIDMYMRCGKVDEARRVFDAM 553
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P+ N L +W +I G + EA+ M+ + D + ++L +C
Sbjct: 554 PEHN------LVTWKVMITGFTQNGRSEEALKYMFLMQQEGYVVDEFVLSTVLSSC 603
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ CL+ +C +LG++VH ++ +V++ + I + Y +CG + A V D M
Sbjct: 192 TFVCLLKSCGERCDARLGQQVHCCVVKG-GWSNVIVDSAITHFYAQCGDVAAASTVFDRM 250
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R+VI SW +I ++++A+ +F M P+ TV S L AC
Sbjct: 251 ASRDVI------SWTTMITAYVQHGHSDKALQMFPTMVSEGFRPNEFTVCSALKACA 301
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 7/138 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
EA++ F ++ F + T L+S C S++S+ G+++H I+ + + ++ + +
Sbjct: 373 EEAVLLFRKMKMRRVF-VNHLTIVSLLSACGSMQSIYHGKELHAQIIKNCMEENLQIGST 431
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++ Y + G A + + MP R D +W A+I+G + + EA+ EM
Sbjct: 432 LVWFYNRRGEHTYATRILEAMPDR------DAVAWTAMISGYNNLGHNVEALKSLDEMLW 485
Query: 144 RELIPDGLTVRSLLCACT 161
++P+ T S L AC
Sbjct: 486 DGVVPNTYTYSSALKACA 503
Score = 39.7 bits (91), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
R+ H L S V + N +++ Y + + +AR V DEMP+R+++ SW A++
Sbjct: 109 RRAHAVALRSLGSLGVFVSNNLISAYVRFDEVANARKVFDEMPERSIV------SWTAMM 162
Query: 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
G E L +M + + LT LL +C
Sbjct: 163 NGYQKLGCHGEVARLLMDMLIAGVQGNSLTFVCLLKSC 200
>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 8/163 (4%)
Query: 1 MIRNLKTQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRS 58
+ R++ F F + + + +L A F + + RI PSTY +I C+ L
Sbjct: 64 LFRSVSDPDSFLFNSLIKASSNFGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSL 123
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118
L+LG VH H+ S + +Q ++ Y K + AR V DEMPQR++I +W
Sbjct: 124 LRLGTIVHSHVFVSGYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSII------AW 177
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
N++I+G A+EA+ +F++MR+ PD T S+L AC+
Sbjct: 178 NSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACS 220
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 6/117 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T+ ++S CS L SL LG +H+ I+ + + +VVL ++NM+ +CG + AR V D
Sbjct: 210 ATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLATSLVNMFSRCGDVGRARAVFDS 269
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
M + NV+ SW A+I+G EAM +F M+ ++P+ +T ++L AC
Sbjct: 270 MNEGNVV------SWTAMISGYGMHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSAC 320
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 77/139 (55%), Gaps = 11/139 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
NEALV F + + +P+ T ++S C L +L+ GR VH +I ++ Q +V +
Sbjct: 172 NEALVLF---RRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVG 228
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+++MY KCGSLEDAR+V D+ I+ D+ +WN++I G A + EA+ LF M
Sbjct: 229 TALVDMYSKCGSLEDARLVFDK------IDDKDVVAWNSMIVGYAMHGFSQEALQLFKSM 282
Query: 142 RDRELIPDGLTVRSLLCAC 160
L P +T +L AC
Sbjct: 283 CRMGLHPTNITFIGILSAC 301
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 68 HILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127
+ + + +V +L Y K G L+ ARV+ D M +R D WN +I G
Sbjct: 114 QLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEER------DGVCWNVMIDGYTQ 167
Query: 128 PSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
NEA+ LF M + P+ +TV S+L AC
Sbjct: 168 NGMPNEALVLFRRMLKAKAKPNEVTVLSVLSAC 200
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 77/139 (55%), Gaps = 11/139 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
NEALV F + + +P+ T ++S C L +L+ GR VH +I ++ Q +V +
Sbjct: 238 NEALVLF---RRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVG 294
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+++MY KCGSLEDAR+V D+ I+ D+ +WN++I G A + EA+ LF M
Sbjct: 295 TALVDMYSKCGSLEDARLVFDK------IDDKDVVAWNSMIVGYAMHGFSQEALQLFKSM 348
Query: 142 RDRELIPDGLTVRSLLCAC 160
L P +T +L AC
Sbjct: 349 CRMGLHPTNITFIGILSAC 367
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 68 HILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127
+ + + +V +L Y K G L+ ARV+ D M +R D WN +I G
Sbjct: 180 QLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEER------DGVCWNVMIDGYTQ 233
Query: 128 PSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
NEA+ LF M + P+ +TV S+L AC
Sbjct: 234 NGMPNEALVLFRRMLKAKAKPNEVTVLSVLSAC 266
>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Vitis vinifera]
Length = 633
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 69/116 (59%), Gaps = 6/116 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+ ++ TC+ L +++ G++VH + DV++++ ++++Y KCG +E A+ + D+MP
Sbjct: 363 FGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMP 422
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
RN+I +WN++I G A EA+ +F++M + PD ++ +L AC+
Sbjct: 423 VRNLI------TWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACS 472
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 77/139 (55%), Gaps = 8/139 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+ ++EAL F +Q + T+ +++ C +L L+ G++VH ++++ +VV+
Sbjct: 241 DFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVV 300
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
++ +++MYGKCGS+ +++ + D MP +N + SW+A++ G + + +F +
Sbjct: 301 ESSLVDMYGKCGSVGESQRIFDRMPIKNSV------SWSALLGGYCQNGDFKSVIQIFRK 354
Query: 141 MRDRELIPDGLTVRSLLCA 159
M +L G +R+ CA
Sbjct: 355 MEKVDLYCFGTILRT--CA 371
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + +I CS L L+LGR H +L + V+ + +++M+G+ +L+DAR + DE+
Sbjct: 163 TLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDEL 222
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSLLCAC 160
+ PD W +II+ + +EA+ F M RD + PDG T ++L AC
Sbjct: 223 LE------PDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTAC 273
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS-LEDARVV 100
+P YA L+ TC+ + + G ++H H++ S + D + N +L +Y K G+ + R V
Sbjct: 58 KPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKV 117
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
D + ++VI SW ++I+G ++ LF +M + P+ T+ +++ AC
Sbjct: 118 FDGLFVKDVI------SWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKAC 171
Query: 161 TSPSNV 166
+ ++
Sbjct: 172 SELGDL 177
>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 989
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 75/137 (54%), Gaps = 7/137 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F + N T+ +S ++ +++ G+++H ++ + + N +
Sbjct: 600 EALQVFSQM-NQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVL 658
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+ +Y KCGS+EDA+ EMP++NV+ SWNA+I G + +EA+SLF EM+
Sbjct: 659 ITLYSKCGSIEDAKREFFEMPEKNVV------SWNAMITGYSQHGYGSEAVSLFEEMKQL 712
Query: 145 ELIPDGLTVRSLLCACT 161
L+P+ +T +L AC+
Sbjct: 713 GLMPNHVTFVGVLSACS 729
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY ++ TC+SL +L LG ++H ++ S Q +V + + +++MY K G L+ AR + +
Sbjct: 417 TYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRL 476
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ +V+ SW A+IAG EA+ LF EM ++ + D + S + AC
Sbjct: 477 REEDVV------SWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAG 528
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 77/147 (52%), Gaps = 7/147 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
+L+ EAL F ++N R ++ IS C+ +++L G+++H S D+
Sbjct: 494 HDLFAEALKLFQEMENQ-GIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLS 552
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ N ++++Y +CG +DA + ++ I++ D SWNA+I+G A + EA+ +FS
Sbjct: 553 IGNALVSLYARCGRAQDAYLAFEK------IDAKDNISWNALISGFAQSGHCEEALQVFS 606
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNV 166
+M + + T S + A + +N+
Sbjct: 607 QMNQAGVEANLFTFGSAVSATANTANI 633
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P ++ ++S C+ + +LG ++H I+ + + N ++ +Y + G+L A +
Sbjct: 213 PYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFS 272
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+M +R+ I S+N++I+G+A ++ A+ LF +M+ + PD +TV SLL AC S
Sbjct: 273 KMHRRDRI------SYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACAS 326
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
R TY L C + SL +K+H I S + VL + ++++Y G +++A
Sbjct: 5 GIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNA 64
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+ D++P NV + WN +I+G+ + A++ + LFS M + PD T S+L
Sbjct: 65 IKLFDDIPSSNV------SFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVL 118
Query: 158 CACTS 162
AC+
Sbjct: 119 RACSG 123
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A L+S C+S+ + G+++H +++ D++++ +L++Y KC +E A
Sbjct: 316 TVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTT 375
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
NV+ WN ++ N +E+ +F +M+ L+P+ T S+L CTS
Sbjct: 376 ETENVV------LWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTS 427
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 7/119 (5%)
Query: 44 STYACLISTCSSLRS-LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
ST+A ++ CS ++ Q+ ++H I+ ++ N ++++Y K G ++ A++V +
Sbjct: 112 STFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFE 171
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ + D SW A+I+G++ +EA+ LF +M +IP S+L ACT
Sbjct: 172 RLFLK------DSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACT 224
>gi|125548143|gb|EAY93965.1| hypothetical protein OsI_15743 [Oryza sativa Indica Group]
gi|125590256|gb|EAZ30606.1| hypothetical protein OsJ_14659 [Oryza sativa Japonica Group]
Length = 328
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+A+ FD ++ +R A ++S C+ L +L G++VH+++ ++ +P+V L
Sbjct: 54 EKAVRLFDRMRRE-GYRPDDVALAAVLSCCAQLGALDKGQEVHEYVRRTRPRPNVYLCTG 112
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
I+++Y KCG +E AR V D P++NV +WNA+I G+A + A+ F M
Sbjct: 113 IVDLYAKCGRVEVAREVFDACPEKNVF------TWNALIVGLAMHGHGTVALDYFDRMLV 166
Query: 144 RELIPDGLTVRSLLCACTSPSNV 166
PDG T +L C+ V
Sbjct: 167 EGFRPDGTTFLGVLIGCSHAGLV 189
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
PDVV N +++ Y K G L A V + MP+R+ + SW ++AG A +A+
Sbjct: 4 PDVVSHNALVHGYVKAGRLGLAVRVFEGMPERDAV------SWGTVVAGCAKAGRLEKAV 57
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACT 161
LF MR PD + + ++L C
Sbjct: 58 RLFDRMRREGYRPDDVALAAVLSCCA 83
>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
LY+EA+ F L + T F+ T+ CLI C+ + LG+ VH + D+ +
Sbjct: 189 LYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVG 248
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++ +YGKCG L++A + D+MP++N+I SWN++I G + EA F +
Sbjct: 249 NAMIALYGKCGFLDEAVELFDKMPEQNLI------SWNSLIRGFSENGFWLEAYRAFRSL 302
Query: 142 RDR--ELIPDGLTVRSLLCACTSPSNV 166
+ LIPD T+ +LL C+ NV
Sbjct: 303 LESGDGLIPDVATMVTLLPVCSGEGNV 329
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 14/146 (9%)
Query: 29 AFDFLQ----NNTNFRI--RPSTYACLISTCSSLRSLQLGRKVHDHI-LSSKSQPDVVLQ 81
A DFLQ NN + + R L+ C +++++GRK+ + + +SS+ D VL
Sbjct: 87 ALDFLQRAWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLN 146
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
++ MY CG ++R+V D + +N+ + WNA+++G +EA+ F E+
Sbjct: 147 TRLITMYSICGYPLESRLVFDRLLNKNLFQ------WNALVSGYVRNELYDEAIHTFLEL 200
Query: 142 RD-RELIPDGLTVRSLLCACTSPSNV 166
E PD T L+ ACT ++
Sbjct: 201 ISVTEFQPDNFTFPCLIKACTGKCDI 226
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 16/152 (10%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSS 72
N PI+ A DF T I P ++ L+ C L LQ G+++H +L +
Sbjct: 495 NGDPIK--------ALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRN 546
Query: 73 KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNAN 132
+ + + +L++Y C R + M +N + WNA+++G + N
Sbjct: 547 GLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSV------CWNAMLSGYSQNELPN 600
Query: 133 EAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
EA+SLF +M L PD + + S+L AC+ S
Sbjct: 601 EALSLFRQMLSDGLEPDEIAIASILGACSQLS 632
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
A ++ CS L +L LG++VH L + D + +++MY K G L ++ +
Sbjct: 622 ASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIF----- 676
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
N + ++ASWN +I G N+A+ LF +M+ + PD T +L AC V
Sbjct: 677 -NRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLV 735
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
R +H + L Q ++ N + Y KCGSL A V M ++V +SWNA+I
Sbjct: 436 RALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSV------SSWNAVI 489
Query: 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
G A + +A+ + EM ++PD ++ SLL AC
Sbjct: 490 GGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLAC 527
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 21 NLYNEALVAF-DFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
+ EA AF L++ +T L+ CS ++ +G +H + +++
Sbjct: 290 GFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELM 349
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ N +++MY KCG L +A ++ ++ ++V+ SWN++I + E L
Sbjct: 350 VCNALIDMYSKCGCLSEAAILFRKIENKSVV------SWNSMIGAYSREGFVFETFDLLR 403
Query: 140 EM-RDRELIP-DGLTVRSLLCACTSPSNVLYL 169
+M + EL+ + +T+ +LL AC S +L L
Sbjct: 404 KMWMEEELMEVNEVTILNLLPACLEESELLSL 435
>gi|255538774|ref|XP_002510452.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551153|gb|EEF52639.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1218
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 10/144 (6%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHI-LSSKSQPDVVLQN 82
NEA+ A + + + + ++ P T+ L+ +C S+ LGRKVH H L + P L+
Sbjct: 56 NEAVSALELIAQHGS-KVSPKTFISLLQSCIDCNSVTLGRKVHAHFHLVQEKNP--FLET 112
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCGSL DAR + EM ++N L +W+A+I + E + LF M
Sbjct: 113 KLVSMYAKCGSLSDARKLFGEMREKN------LYTWSAMIGAFSREHRWKEVVELFYMMM 166
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
+ +PD + +L AC + ++
Sbjct: 167 EENCLPDAFLLPKILQACGNSRDI 190
Score = 69.3 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 74/139 (53%), Gaps = 18/139 (12%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+L+N+ ++A R+ P+ T + +S C+SL+ L G ++H + DV
Sbjct: 331 HLFNDMILA----------RVEPNGVTISSAVSACASLKVLNEGLEIHALAVKLGFVEDV 380
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
++ N +++MY KCG LE+A V D MP++ D+ +WN++I G +A LF
Sbjct: 381 LVGNSLIDMYSKCGKLENAWKVFDMMPEK------DVYTWNSMIGGYCQVGYCGKAHMLF 434
Query: 139 SEMRDRELIPDGLTVRSLL 157
+M+ E P+ +T +++
Sbjct: 435 MKMQKSETQPNAITWNNMI 453
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 4/120 (3%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+ + LIS ++ +++ D + +P +V N ++ Y + G + + +
Sbjct: 241 AAWNALISGYCQHGQIEEAQRLFDAMREEGIEPGLVSWNILIAGYNQLGYFD---IAMEL 297
Query: 104 MPQRNVI-ESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
M + V+ SPD+ +W ++I+G+A A++A+ LF++M + P+G+T+ S + AC S
Sbjct: 298 MKKMEVLGTSPDVVTWTSMISGLAQNDKASKALHLFNDMILARVEPNGVTISSAVSACAS 357
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ C + R ++ G VH + + N IL +Y KCG L A + M
Sbjct: 180 ILQACGNSRDIKSGEMVHSLAIKCGVDGYPFVNNSILAVYAKCGKLSLASKCFEMM---- 235
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ + A+WNA+I+G EA LF MR+ + P GL ++L A
Sbjct: 236 --DKSETAAWNALISGYCQHGQIEEAQRLFDAMREEGIEP-GLVSWNILIA 283
Score = 43.9 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 72 SKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNA 131
S++QP+ + N ++ Y G + A + M + I+ D ASWN++I+G
Sbjct: 440 SETQPNAITWNNMIWGYIHNGDEDQAMDLFRRMEEDGKIKR-DTASWNSLISGYLQIGQK 498
Query: 132 NEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
++A+S+F +M+ + + +T+ S+L AC +
Sbjct: 499 DKALSIFRQMQSFSININSVTILSVLPACAN 529
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
++AL F +Q+ + I T ++ C++L +L++ +++H ++ + + N
Sbjct: 499 DKALSIFRQMQS-FSININSVTILSVLPACANLIALKMVKEIHGCVIRRNLDSLLPITNS 557
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+++ Y K G++ +R + D R + + D +WN++IAG ++ A+ L +M+
Sbjct: 558 LIDTYAKSGNIGYSRTIFD----RALFK--DFITWNSLIAGYVLFGCSDAALGLVDQMKK 611
Query: 144 RELIPD 149
+ P+
Sbjct: 612 LGIKPN 617
>gi|147834943|emb|CAN70199.1| hypothetical protein VITISV_021220 [Vitis vinifera]
Length = 627
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+ L ++C S + L+ +KVHD L S + D+ L N +L MYG CGS+ DAR V D M
Sbjct: 285 FYALFNSCGSPKLLEEAKKVHDFFLQSTFRSDLQLNNKVLEMYGNCGSMTDARRVFDHMT 344
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
R D+ SW+ +I G A+ + ++ + L+ +MR L P+ T ++L C S
Sbjct: 345 NR------DMDSWHLMINGYANNAMGDDGLQLYEQMRKLGLEPNEQTFLAVLSTCAS 395
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 19/148 (12%)
Query: 21 NLYNEALVAF-DFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
NLY EAL+ F D L++ +P+ T ++S C+ L ++ +GR +H +I K
Sbjct: 315 NLYKEALLLFQDMLRSGE----KPNDVTMLSILSACAHLGAIDIGRWIHVYI--DKRLKG 368
Query: 78 VV----LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
V L+ +++MY KCG +E A+ V D M R+ L+SWNA+I G A AN
Sbjct: 369 VTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRS------LSSWNAMIFGFAMHGRANA 422
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACT 161
A +FS MR + PD +T LL AC+
Sbjct: 423 AFDIFSRMRKNGIEPDDITFVGLLSACS 450
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 7/139 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y EAL F + TN R ST ++S C+ S++LGR+VH I ++ + N
Sbjct: 216 YKEALELFKKMMK-TNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVN 274
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++++Y KCG LE A + + ++VI SWN +I G + EA+ LF +M
Sbjct: 275 ALIDLYSKCGELETACGLFQGLSNKDVI------SWNTLIGGYTHMNLYKEALLLFQDML 328
Query: 143 DRELIPDGLTVRSLLCACT 161
P+ +T+ S+L AC
Sbjct: 329 RSGEKPNDVTMLSILSACA 347
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 25/147 (17%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ +C+ + + G+++H +L D+ + +++MY + G LEDA+ V D+
Sbjct: 105 TFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKS 164
Query: 105 PQRNVI-----------------------ESP--DLASWNAIIAGVASPSNANEAMSLFS 139
R+V+ E P D+ SWNA I+G A N EA+ LF
Sbjct: 165 SHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFK 224
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNV 166
+M + PD T+ ++L AC ++
Sbjct: 225 KMMKTNVRPDESTMVTVLSACAQSGSI 251
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 14/133 (10%)
Query: 43 PSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
P +YA ++ C +L+ GR+VH +L + ++ ++ +YGKCG+ EDAR V
Sbjct: 128 PDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRV 187
Query: 101 SDEMPQRNVIES------------PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP 148
DEMP+R+V+ S D W A+I G+ +N A+ +F M+ +++P
Sbjct: 188 FDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMP 247
Query: 149 DGLTVRSLLCACT 161
+ +T+ +L AC+
Sbjct: 248 NEVTIVCVLSACS 260
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 74/135 (54%), Gaps = 8/135 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A + +N + P+ T C++S CS L +LQLGR V ++ + + + + ++N
Sbjct: 233 ALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALIN 292
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY +CG +++A+ V ++M ++NVI ++N++I G A + EA+ LF + +
Sbjct: 293 MYSRCGDIDEAQRVFEQMKEKNVI------TYNSMIMGFALHGKSVEAVELFRGLIKQGF 346
Query: 147 IPDGLTVRSLLCACT 161
P +T +L AC+
Sbjct: 347 TPSSVTFVGVLNACS 361
>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g23330
gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 85/146 (58%), Gaps = 12/146 (8%)
Query: 19 IQN-LYNEALVAFDFLQNNTNFRIRPST--YACLISTCSSLRSLQLGRKVHDHILSSKSQ 75
+QN YNEAL F + +++P ++ +I C+ L +L LG+++H ++L
Sbjct: 319 VQNGRYNEALRLF---RQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFG 375
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
++ + + +++MY KCG+++ AR + D M NV+ D SW AII G A + +EA+
Sbjct: 376 SNIFIASALVDMYSKCGNIKAARKIFDRM---NVL---DEVSWTAIIMGHALHGHGHEAV 429
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACT 161
SLF EM+ + + P+ + ++L AC+
Sbjct: 430 SLFEEMKRQGVKPNQVAFVAVLTACS 455
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 37/171 (21%)
Query: 20 QNLYNEALVAFDFLQNN---TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
Q+L+++AL +F ++ + + + PS ++ +C+ + L+ G VH I+
Sbjct: 83 QSLFSKALASFVEMRASGRCPDHNVFPS----VLKSCTMMMDLRFGESVHGFIVRLGMDC 138
Query: 77 DVVLQNYILNMYGKC---GSLEDARVVSDEMPQRN------------------------- 108
D+ N ++NMY K GS V DEMPQR
Sbjct: 139 DLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRV 198
Query: 109 --VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
V+ D+ S+N IIAG A +A+ + EM +L PD T+ S+L
Sbjct: 199 FEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVL 249
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
G+++H +++ DV + + +++MY K +ED+ V + R+ I SWN++
Sbjct: 261 GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGI------SWNSL 314
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+AG NEA+ LF +M ++ P + S++ AC
Sbjct: 315 VAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPAC 353
>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 597
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 81/145 (55%), Gaps = 7/145 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y +AL+ F + R TY ++ C+ LR L+ G ++H I ++ ++ +Q+
Sbjct: 119 YQDALLVFSQM-GRAGVRANQFTYGSVLRACTGLRCLERGMQIHGCIQKNRFIGNLFVQS 177
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++++ KCG++EDAR + + M +R+V+ SWNA+I G A+ +++ +F M
Sbjct: 178 ALVDLHSKCGNMEDARYLFETMSERDVV------SWNAVIGGYAAQDFNDDSFRMFYSMM 231
Query: 143 DRELIPDGLTVRSLLCACTSPSNVL 167
+ PD T+ S+L A + +N++
Sbjct: 232 GEGVTPDCFTLGSVLKASSRANNLI 256
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 73/137 (53%), Gaps = 7/137 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F +Q+ I T+ +++ C+ + SL +GR++H + K DV N +
Sbjct: 324 EALDLFKDMQH-IFMEIDDVTFCTMLNVCADIASLSIGRQIHALAIKYKPSYDVATGNAL 382
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MY K G +EDA EM ++NVI SW ++I G +EA++L+ +M
Sbjct: 383 VDMYAKSGEIEDATRAFYEMKEKNVI------SWTSLITGYGKHGYGHEAIALYKKMEYE 436
Query: 145 ELIPDGLTVRSLLCACT 161
L P+ +T SLL AC+
Sbjct: 437 GLKPNDITFLSLLFACS 453
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 14/144 (9%)
Query: 27 LVAFDFLQNNTNF--------RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
L+ F FL+ + + S Y ++ C L+ G +H HI+ + ++
Sbjct: 13 LLQFTFLKQRFHHSPCEPELTHLSSSLYMKILQLCIETEDLKQGCLIHSHIIRNGFDSNL 72
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
L ++ Y K G +AR V D MP+RNV+ SW A I+G A + +A+ +F
Sbjct: 73 HLSTKLIIFYVKFGETINARKVFDRMPERNVV------SWTAQISGYAKNGHYQDALLVF 126
Query: 139 SEMRDRELIPDGLTVRSLLCACTS 162
S+M + + T S+L ACT
Sbjct: 127 SQMGRAGVRANQFTYGSVLRACTG 150
>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
LY+EA+ F L + T F+ T+ CLI C+ + LG+ VH + D+ +
Sbjct: 189 LYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVG 248
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++ +YGKCG L++A + D+MP++N+I SWN++I G + EA F +
Sbjct: 249 NAMIALYGKCGFLDEAVELFDKMPEQNLI------SWNSLIRGFSENGFWLEAYRAFRSL 302
Query: 142 RDR--ELIPDGLTVRSLLCACTSPSNV 166
+ LIPD T+ +LL C+ NV
Sbjct: 303 LESGDGLIPDVATMVTLLPVCSGEGNV 329
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 14/146 (9%)
Query: 29 AFDFLQ----NNTNFRI--RPSTYACLISTCSSLRSLQLGRKVHDHI-LSSKSQPDVVLQ 81
A DFLQ NN + + R L+ C +++++GRK+ + + +SS+ D VL
Sbjct: 87 ALDFLQRAWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLN 146
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
++ MY CG ++R+V D + +N+ + WNA+++G +EA+ F E+
Sbjct: 147 TRLITMYSICGYPLESRLVFDRLLNKNLFQ------WNALVSGYVRNELYDEAIHTFLEL 200
Query: 142 RD-RELIPDGLTVRSLLCACTSPSNV 166
E PD T L+ ACT ++
Sbjct: 201 ISVTEFQPDNFTFPCLIKACTGKCDI 226
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 16/152 (10%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSS 72
N PI+ A DF T I P ++ L+ C L LQ G+++H +L +
Sbjct: 495 NGDPIK--------ALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRN 546
Query: 73 KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNAN 132
+ + + +L++Y C R + M +N + WNA+++G + N
Sbjct: 547 GLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSV------CWNAMLSGYSQNELPN 600
Query: 133 EAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
EA+SLF +M L PD + + S+L AC+ S
Sbjct: 601 EALSLFRQMLSDGLEPDEIAIASILGACSQLS 632
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
A ++ CS L +L LG++VH L + D + +++MY K G L ++ +
Sbjct: 622 ASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIF----- 676
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
N + ++ASWN +I G N+A+ LF +M+ + PD T +L AC V
Sbjct: 677 -NRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLV 735
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
R +H + L Q ++ N + Y KCGSL A V M ++V +SWNA+I
Sbjct: 436 RALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSV------SSWNAVI 489
Query: 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
G A + +A+ + EM ++PD ++ SLL AC
Sbjct: 490 GGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLAC 527
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 21 NLYNEALVAF-DFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
+ EA AF L++ +T L+ CS ++ +G +H + +++
Sbjct: 290 GFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELM 349
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ N +++MY KCG L +A ++ ++ ++V+ SWN++I + E L
Sbjct: 350 VCNALIDMYSKCGCLSEAAILFRKIENKSVV------SWNSMIGAYSREGFVFETFDLLR 403
Query: 140 EM-RDRELIP-DGLTVRSLLCACTSPSNVLYL 169
+M + EL+ + +T+ +LL AC S +L L
Sbjct: 404 KMWMEEELMEVNEVTILNLLPACLEESELLSL 435
>gi|357153639|ref|XP_003576518.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 538
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 10/123 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHI-LSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T L++ C+ L LQLGR VH + + Q V+L N +++MY +CG++EDA +
Sbjct: 288 TMVALLTACAELGDLQLGRWVHARVDQDGQDQRIVLLDNALIHMYVRCGAVEDAHCMFLR 347
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
MP+R+ + SW +I+G+A A EA+ LF M +R PDG T+ ++L AC+
Sbjct: 348 MPRRSTV------SWTTMISGLAIHGRAEEALELFRRMEER---PDGATLLAVLWACSHS 398
Query: 164 SNV 166
V
Sbjct: 399 GKV 401
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 46/102 (45%), Gaps = 25/102 (24%)
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVI-----------------------ESP--DLASW 118
+L+MY G L DA V DEMP+R V E P D +W
Sbjct: 195 LLDMYATAGQLGDAGKVFDEMPERTVAAWNCMLSAYVRCGEVDAALHFFGEMPGRDAVAW 254
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+IAG A+ A EA+ LF MR + D +T+ +LL AC
Sbjct: 255 TTVIAGCANAGRAAEAVDLFWRMRKARVKDDAVTMVALLTAC 296
>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
Length = 610
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 6/125 (4%)
Query: 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
R Y I+ C R+L+ GR+VH ++++ +P + L ++ MY +CG+LEDA V
Sbjct: 34 RFHDYDAAITECVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVL 93
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
D MP+RNV+ SW A+I+G + EA LF M P+ T+ S+L +CT
Sbjct: 94 DGMPERNVV------SWTAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCT 147
Query: 162 SPSNV 166
+
Sbjct: 148 GSQGI 152
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 74/137 (54%), Gaps = 8/137 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L EAL F L N + T++ L++ S L S+ G++VH IL + + L
Sbjct: 218 GLDEEALNLFRQLYNE-GMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPFFMAL 276
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
QN +++MY KCG L +R V D MP+R+V+ SWNA++ G A E + LF
Sbjct: 277 QNSLIDMYSKCGKLLYSRRVFDNMPERSVV------SWNAMLMGYGRHGMAYEVVQLFRF 330
Query: 141 MRDRELIPDGLTVRSLL 157
M D+ + PD +T+ ++L
Sbjct: 331 MCDK-VKPDSVTLLAVL 346
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 66/126 (52%), Gaps = 8/126 (6%)
Query: 45 TYACLISTCSSLRSLQLG--RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
T A ++++C+ + + ++VH + + + + + +L+MY + ++++AR V D
Sbjct: 138 TLASVLTSCTGSQGIHQHQIKQVHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFD 197
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+P R+V+ S+ I++G EA++LF ++ + + + +T LL A +
Sbjct: 198 MLPARDVV------SYTTILSGYTRLGLDEEALNLFRQLYNEGMQCNQVTFSVLLNALSG 251
Query: 163 PSNVLY 168
S++ Y
Sbjct: 252 LSSMDY 257
>gi|347954484|gb|AEP33742.1| chlororespiratory reduction 21 [Barbarea verna]
Length = 607
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 6/115 (5%)
Query: 52 TCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIE 111
C +L+ + GR VH +++ S V + + + +MYGKCG L+DAR V DE+P+RNV+
Sbjct: 176 ACGALQWSRFGRGVHGYVVKSGXDDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVV- 234
Query: 112 SPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+WNA++ G EA+ LF +MR+ + P +TV + L A + +
Sbjct: 235 -----AWNALMVGYVQNGMNEEAIRLFFDMREEGIEPTRVTVSTCLSASANMGGI 284
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 64/115 (55%), Gaps = 6/115 (5%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
N + T A L+S + ++L+LG++V + + + D+VL + ++MY KCGS+ DA
Sbjct: 364 NLKYDCVTLATLMSAAARTQNLKLGKEVQCYCIRHSLESDIVLASTAIDMYAKCGSIVDA 423
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
R D + ++ DL WN ++A A P + EA+ LF EM+ + P+ +T
Sbjct: 424 RKAFDSIVEK------DLILWNTLLAAYAEPGLSGEALRLFYEMQLESVPPNVIT 472
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLE 95
N RI P Y ++ C R L G+++H IL + + ++ ++ Y KC S E
Sbjct: 59 NLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNGDFYARNEYIETKLVIFYSKCDSFE 118
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
A V+ ++ RNV SW AII A+ F EM + + PD V +
Sbjct: 119 VAEVLFSKLRVRNVY------SWAAIIGLKCRIGLCEGALMGFVEMFEDGIFPDNFVVPN 172
Query: 156 LLCACTS 162
+ AC +
Sbjct: 173 VXKACGA 179
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 6/148 (4%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+QN NE + F T + +S +++ ++ G++ H + + D
Sbjct: 244 VQNGMNEEAIRLFFDMREEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVHGLELDN 303
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+L ILN Y K G +E A ++ D M +++V+ +WN +I+G +A+ +
Sbjct: 304 ILGTSILNFYCKVGLIEYAEMIFDRMIEKDVV------TWNLLISGYVQQGLVEDAIHMC 357
Query: 139 SEMRDRELIPDGLTVRSLLCACTSPSNV 166
MR L D +T+ +L+ A N+
Sbjct: 358 QLMRLENLKYDCVTLATLMSAAARTQNL 385
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQ-PD 77
+QN +E + F + R + +S C+ L SL LGR +H +I+ ++
Sbjct: 516 VQNGCSEEAILFLRKMQESGLRPNAISITVALSACAHLASLHLGRSIHGYIIRNQHHSSS 575
Query: 78 VVLQNYILNMYGKCGSLEDARVV 100
V ++ +++MY KCG L A ++
Sbjct: 576 VSIETSLVDMYAKCGDLNKAEMI 598
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
P+V+ N I+ + G + +A+ + +M V P+L SW ++ G+ + EA+
Sbjct: 468 PNVITWNLIILSFLGNGQVNEAKEMFLQMQSSGVF--PNLVSWTTMMNGLVQNGCSEEAI 525
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACT 161
+M++ L P+ +++ L AC
Sbjct: 526 LFLRKMQESGLRPNAISITVALSACA 551
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 74/141 (52%), Gaps = 7/141 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N Y E L FD + N + T +I CS L + + +I + + DV L
Sbjct: 104 NKYKEVLRLFDAM-TAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYL 162
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MYG+ G+L AR + D MP+R+VI SW ++I G + S ++A+ LF E
Sbjct: 163 GNTLIDMYGRLGNLTAARKLFDNMPKRDVI------SWTSMITGYSQASQFSDAVKLFQE 216
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M ++ PD +TV S+L AC
Sbjct: 217 MMAAKVKPDKVTVASVLSACA 237
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 8/140 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A Q +++P T A ++S C+ L L +G VH +I Q D+ + N +++
Sbjct: 210 AVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLID 269
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG +E A V M + D SW ++I+G+A AN A+ LFS+M +
Sbjct: 270 MYCKCGMVEKALEVFHRMKDK------DSVSWTSVISGLAVNGFANSALDLFSQMLREGV 323
Query: 147 IPDGLTVRSLLCACTSPSNV 166
P T +L AC V
Sbjct: 324 QPTHGTFVGILLACAHAGLV 343
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
A +++ +++ + + +H H L + + + N +++MY CG L A+ + D M
Sbjct: 28 ALVVALTTNINASTISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLD 87
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
R DL SWN +I G + + E + LF M + D +T+ ++ AC+ +
Sbjct: 88 R------DLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDW 141
Query: 167 LYLD 170
+ D
Sbjct: 142 EFAD 145
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 44/116 (37%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++S C L L G+ +HD I + P V L N +L+MY +CG ++ A + EM
Sbjct: 345 TLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEM 404
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P +NVI SWNAII +A A +A+ F M PD +T +LL AC
Sbjct: 405 PSKNVI------SWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDEITFVALLSAC 454
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 25/141 (17%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T L+ CS+ +L+ G+ VH H+L + D++L N +++MYGKCG L A D M
Sbjct: 213 TLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMM 272
Query: 105 PQRNV-------------------------IESPDLASWNAIIAGVASPSNANEAMSLFS 139
P +N I + SWNA+I+ +EA+ L++
Sbjct: 273 PFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYN 332
Query: 140 EMRDRELIPDGLTVRSLLCAC 160
M+ L PD T+ ++L AC
Sbjct: 333 RMKLLGLAPDEFTLAAVLSAC 353
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T L+ C+ +++ + H ++ V + N +L+ Y GSL D+R DEM
Sbjct: 112 TLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEM 171
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
RNV+ SWN++I G A N EA SLF MR + L+ D T+ SLL AC++
Sbjct: 172 VDRNVV------SWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEG 225
Query: 165 NVLY 168
N+ +
Sbjct: 226 NLEF 229
>gi|15218851|ref|NP_171853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180299|sp|Q9LR69.1|PPR8_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g03540
gi|9280645|gb|AAF86514.1|AC002560_7 F21B7.16 [Arabidopsis thaliana]
gi|91805735|gb|ABE65596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332189463|gb|AEE27584.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 609
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 80/139 (57%), Gaps = 8/139 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+LY EAL F + ST+ +++ C +LR L+ G+++H ++++ +VV+
Sbjct: 243 DLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVV 302
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
++ +L+MYGKCGS+ +AR V + M ++N + SW+A++ G +A+ +F E
Sbjct: 303 ESSLLDMYGKCGSVREARQVFNGMSKKNSV------SWSALLGGYCQNGEHEKAIEIFRE 356
Query: 141 MRDRELIPDGLTVRSLLCA 159
M +++L G +++ CA
Sbjct: 357 MEEKDLYCFGTVLKA--CA 373
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 68/115 (59%), Gaps = 6/115 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+ ++ C+ L +++LG+++H + +V++++ ++++YGK G ++ A V +M
Sbjct: 365 FGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDSASRVYSKMS 424
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
RN+I +WNA+++ +A EA+S F++M + + PD ++ ++L AC
Sbjct: 425 IRNMI------TWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAILTAC 473
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + + CS L ++LGR H +++ + + + + + +YG DAR V DEM
Sbjct: 165 TLSSAVKACSELGEVRLGRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEM 224
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSLLCAC 160
P+ PD+ W A+++ + EA+ LF M R + L+PDG T ++L AC
Sbjct: 225 PE------PDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTAC 275
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG-SLEDARVVS 101
P YA L+ TC+ + S G + H H++ S + D + N +L++Y K G + + R V
Sbjct: 61 PKLYASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVF 120
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
D ++ I SW ++++G + +A+ +F EM L + T+ S + AC+
Sbjct: 121 DGRFVKDAI------SWTSMMSGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVKACS 174
Query: 162 SPSNV 166
V
Sbjct: 175 ELGEV 179
>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 11/147 (7%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS 74
N QP +EAL F LQ++T F T ++ ++L +L+LG VH + K
Sbjct: 274 NKQP-----HEALKLFRELQSSTVFEPNEVTVVSILPAIATLGALELGEWVHRFVQRKKL 328
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
V + +++MY KCG + AR V E+P++ + A+WNA+I G A A+EA
Sbjct: 329 DAAVNVCTSLVDMYLKCGEISKARKVFSEIPKK------ETATWNALINGFAMNGLASEA 382
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCACT 161
+ FSEM+ + P+ +T+ +L AC+
Sbjct: 383 LEAFSEMQQEGIKPNDITMTGVLSACS 409
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 11/131 (8%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
+A + L+ T F T+ L C+ ++ G + H H++ D+ + +
Sbjct: 84 DAFTLYKDLRRETCFVPDNFTFTVLAKCCALRMAVWEGLETHGHVVKIGFCFDMYVSTAL 143
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MY K G+L AR V ++MP R+ L SW A+I G + A LF M R
Sbjct: 144 VDMYAKFGNLGLARKVFNDMPDRS------LVSWTALIGGYVRRGDMGNAWFLFKLMPGR 197
Query: 145 E-----LIPDG 150
+ L+ DG
Sbjct: 198 DSAAFNLLIDG 208
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 26/107 (24%)
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIE-------------------------SPDLA 116
N +++ Y K G +E AR + DEMP+RNVI +L
Sbjct: 203 NLLIDGYVKVGDMESARSLFDEMPERNVISWTSMIYGYCNNGDVLSARFLFDAMPEKNLV 262
Query: 117 SWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCACTS 162
SWNA+I G +EA+ LF E++ + P+ +TV S+L A +
Sbjct: 263 SWNAMIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVVSILPAIAT 309
>gi|357112135|ref|XP_003557865.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
mitochondrial-like [Brachypodium distachyon]
Length = 521
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 48/126 (38%), Positives = 67/126 (53%), Gaps = 10/126 (7%)
Query: 39 FRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
FR ST ++ CS L S +LG +V H++ S D+ + +L+MY KCG +EDAR
Sbjct: 260 FRPTVSTCVSVLGACSLLSSPELGEQVQCHVIKSNIVSDIKAGSALLDMYSKCGRVEDAR 319
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE----LIPDGLTVR 154
V D M RNVI +W ++I G + EA+ LF EMR R+ + P+ T
Sbjct: 320 KVFDGMADRNVI------TWTSMIDGYGKNGLSEEALELFGEMRRRQQQRGVKPNHATFL 373
Query: 155 SLLCAC 160
S L AC
Sbjct: 374 SALSAC 379
>gi|302775720|ref|XP_002971277.1| hypothetical protein SELMODRAFT_94780 [Selaginella moellendorffii]
gi|300161259|gb|EFJ27875.1| hypothetical protein SELMODRAFT_94780 [Selaginella moellendorffii]
Length = 650
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/127 (35%), Positives = 74/127 (58%), Gaps = 13/127 (10%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+AL FD ++ + IRP + + C +L L GRK+H I +++ + ++++ N
Sbjct: 269 KALEVFDAMEGDG---IRPDKCVFVSALEACGALGDLAEGRKIHRRIATARMEENLIVAN 325
Query: 83 YILNMYGKCGSLEDAR--VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
++ MYGKCG +E+AR VV D +P R DLA+WNA+I G A +++ A LF +
Sbjct: 326 GLIAMYGKCGGVEEARAVVVFDLLPLR------DLAAWNAMITGYAQFGHSDPARELFDQ 379
Query: 141 MRDRELI 147
M +R +I
Sbjct: 380 MPERNVI 386
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 9/105 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TYA LI C+ R++ GR+VH HI S D L N ++ M+G+ G + DA V D +
Sbjct: 52 TYAVLIRQCTLARAVPEGRRVHAHI-SKHGCRDSFLLNLLVQMFGRFGCVADASRVFDSI 110
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM--RDRELI 147
P RN SWN ++A A + +A F +M DR +I
Sbjct: 111 PARNCY------SWNIMVAAFAQNGHLQQARITFDQMPPSDRSVI 149
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +I CSSLR + G VH S ++ + + +MYGKC LE ++ + D M
Sbjct: 185 TFVSVIDACSSLRRIDHGIAVHVEARESGTEMHYAVATALASMYGKCRRLERSKEMFDRM 244
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+RN++ SW +IA + +A+ +F M + PD S L AC
Sbjct: 245 EERNMVT----VSWGTMIAAYNQSGDPAKALEVFDAMEGDGIRPDKCVFVSALEAC 296
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 42 RPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP+ TY + C+ + R +H + S D + +LN++ KCGSL A
Sbjct: 417 RPNKITYLKALEACAGGITAAEARTIHAKAIESGYSSDTQVAVGLLNLFEKCGSLAIAER 476
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V D++ +R + +W+ +I+ A ++ LF+EM ++P +TV +LL A
Sbjct: 477 VFDDLGERKTV-----VAWSIMISAYAQSGRPWRSLELFTEMVQSGVMPTEITVVNLLSA 531
Query: 160 CT 161
C+
Sbjct: 532 CS 533
>gi|225444117|ref|XP_002266487.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 553
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 75/135 (55%), Gaps = 8/135 (5%)
Query: 29 AFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A + + N + P +T +++ C+SL LQ GR H I+ + + D+ + +++
Sbjct: 290 AIELFRKMENEMVEPDETTMVSVLAACASLADLQNGRLAHRFIIQNNPRQDLFVGTALID 349
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCGSLE+A V +M R+V +W I G+A+ + ++A+SLF+EM + +
Sbjct: 350 MYAKCGSLEEAMVTFYKMDSRDVF------TWTTAIEGLANHGHGDKALSLFTEMEKQGI 403
Query: 147 IPDGLTVRSLLCACT 161
P+ T S+L AC+
Sbjct: 404 KPNQATFVSVLMACS 418
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 8/116 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY ++ C + SL G++VH H+ + DV + N +L++YG G + DAR + D M
Sbjct: 76 TYPAMLKACWRMGSLSKGKEVHAHVTKTGLDSDVYVGNALLHLYGSTGQVTDARRLFDGM 135
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P R DLASWN ++ A NA E + LF M + D +++ + AC
Sbjct: 136 PHR------DLASWNTLLG--AYNDNAVEVLVLFKRMMYEGIGGDHISMVIVFSAC 183
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 26/144 (18%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM-PQR 107
+ S C + + G++VH +++ +P + L N +L +Y KCG ++ A+ + EM R
Sbjct: 179 VFSACGKIGGTEFGKEVHGYVIKVGIRPALSLSNALLGVYTKCGEMDAAQSLFVEMAAMR 238
Query: 108 NVIES-------------------------PDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+V+ DL SWN++I + +A+ LF +M
Sbjct: 239 DVVSHTILFNGYVDMGSIDLARGIFDQMSVKDLVSWNSMIHAYVKAKHPKKAIELFRKME 298
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
+ + PD T+ S+L AC S +++
Sbjct: 299 NEMVEPDETTMVSVLAACASLADL 322
>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 848
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 78/146 (53%), Gaps = 6/146 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L +EA+ + ++ ++ T+ +++ + + +LQ G ++H H++ + DV +
Sbjct: 455 GLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFV 514
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
++++YGKCG L DA + ++P+ + + WNAII+ + +A+ LF E
Sbjct: 515 GTCLIDLYGKCGRLVDAMCLFYQVPRESSV------PWNAIISCHGIHGHGEKALKLFRE 568
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M+D + PD +T SLL AC+ V
Sbjct: 569 MQDEGVKPDHVTFISLLSACSHSGLV 594
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 9/144 (6%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ EA+ F L T F+ T+ ++ C +L GRK+H + Q DV +
Sbjct: 155 FREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD---GRKIHCWVFKLGFQWDVFVAA 211
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY + G + AR + D+MP R D+ SWNA+I+G+ NA +A+ + EMR
Sbjct: 212 SLIHMYSRFGFVGIARSLFDDMPFR------DMGSWNAMISGLIQNGNAAQALDVLDEMR 265
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
+ D +TV S+L C ++
Sbjct: 266 LEGINMDSVTVASILPVCAQLGDI 289
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++ C+ L + +H +++ + ++ + N ++NMY K G+L DA+ V +M
Sbjct: 275 TVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQM 334
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
R+V+ SWN+IIA + A F +M+ L PD LT+ SL
Sbjct: 335 FLRDVV------SWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSL 380
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD-VVLQNYILNMYGKCGSLEDARVVSDE 103
T L S + R + R VH I+ + VV+ N +++MY K G ++ A V +
Sbjct: 376 TLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNL 435
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD-RELIPDGLTVRSLLCA 159
+P ++V+ SWN +I+G A+EA+ ++ M + RE+ + T S+L A
Sbjct: 436 IPVKDVV------SWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAA 486
>gi|347954500|gb|AEP33750.1| chloroplast biogenesis 19, partial [Lepidium sativum]
Length = 494
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 79/144 (54%), Gaps = 11/144 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ + EAL F +Q + + P A + ++ C++L +L G H +++S + +
Sbjct: 181 KGFHEEALAWFREMQISG---VNPDYVAIIAALAACTNLGALSFGLWAHRYVVSQDFRNN 237
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + N ++++Y +CG +E AR V D M +R V+ SWN++I G A+ NANE++
Sbjct: 238 VRVSNSLIDLYCRCGCVEFARQVFDTMEKRTVV------SWNSVIVGFAANGNANESLVY 291
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F +M++ PD +T L AC+
Sbjct: 292 FRKMQEEGFKPDAVTFTGALTACS 315
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
V N +++ Y + G +++A V DEMP+R DL SW A+I G EA++ F
Sbjct: 138 VTWNTMIDGYMRNGQVDNAVKVFDEMPER------DLISWTAMITGFVKKGFHEEALAWF 191
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
EM+ + PD + + + L ACT
Sbjct: 192 REMQISGVNPDYVAIIAALAACT 214
>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
Length = 744
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 81/145 (55%), Gaps = 11/145 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPST--YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+EAL AF +Q+ +I+P+T AC++S C+ L + L ++VH ++L + + ++
Sbjct: 432 DEALKAFRDMQSK---QIKPNTVTMACILSVCTHLSVMILCKEVHCYLLRHWFETNALVN 488
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N +++ Y KCG + +R V +++P RN + +WN+I+ G +E + F +M
Sbjct: 489 NSLISAYAKCGDIHSSRTVFEKLPVRNEV------TWNSILLGFGMHGRTDEMFATFEKM 542
Query: 142 RDRELIPDGLTVRSLLCACTSPSNV 166
++ + PD T SLL +C+ V
Sbjct: 543 KEANIKPDHGTFTSLLSSCSHSGKV 567
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 8/146 (5%)
Query: 20 QNLY-NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
QN Y NEAL F + F P + CS L G +H + DV
Sbjct: 326 QNGYPNEALEFFSEFMLDCGFP-DPVILLAALRACSFLSLKPRGMAIHGFAIKMGFDSDV 384
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ +++ YGKCG +E A+ V + R DL SWNA+I+G A A+EA+ F
Sbjct: 385 FVGGALVDFYGKCGDMEYAQQVFYGLSTR------DLVSWNALISGFAQNKCADEALKAF 438
Query: 139 SEMRDRELIPDGLTVRSLLCACTSPS 164
+M+ +++ P+ +T+ +L CT S
Sbjct: 439 RDMQSKQIKPNTVTMACILSVCTHLS 464
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 47 ACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
ACL +S+C+S++ L G ++H ++ D L + ++ MY KCG +++A V + +
Sbjct: 144 ACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERI 203
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ N + ++A WN +I G S + A+ LF EM + + PD TV +L C+
Sbjct: 204 -RDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLELGISPDSSTVVVVLVLCS 259
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 13/117 (11%)
Query: 28 VAFDFLQNN---TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
V DF++ FR P CLI L + G+++H H+L D+ ++N +
Sbjct: 25 VYLDFIECGFPVEEFRFFP----CLIKAFGGLYDVNKGKQIHGHLLKFGFLQDIFVKNSL 80
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
L MY KCG+ +A + + M +R D SWN +I+G + +++ +F M
Sbjct: 81 LGMYWKCGAGGNAVDMFERMEER------DSVSWNTMISGFCQSGDYVKSLVMFRRM 131
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 9/141 (6%)
Query: 24 NEAL-VAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
NE L +A + I P ST ++ CS L L +G+++H IL DV +
Sbjct: 226 NECLSLALELFVEMLELGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLDDDVRV 285
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
++ MY KCG E S ++ +R+ ++ +L W +++ A NEA+ FSE
Sbjct: 286 GTALMEMYFKCGDPE----TSLQIFKRS--QNHNLVMWGSVMLNCAQNGYPNEALEFFSE 339
Query: 141 MRDRELIPDGLTVRSLLCACT 161
PD + + + L AC+
Sbjct: 340 FMLDCGFPDPVILLAALRACS 360
>gi|147799976|emb|CAN68263.1| hypothetical protein VITISV_010806 [Vitis vinifera]
Length = 445
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 80/140 (57%), Gaps = 10/140 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
NEAL F ++ T ++ P+ A + +S C+ L +L+ GR +H +I K + +V L
Sbjct: 257 NEALDLF--MEMVTGDKMIPNEAALVSAVSACAQLXALEEGRWLHSYIKEKKLRINVTLG 314
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+L+MYGKCGS+ DA V + M +RNV SWN++IAG+A EA+ LF +M
Sbjct: 315 TVLLDMYGKCGSILDAAGVFNLMSERNV------NSWNSMIAGLALNGCGKEALXLFWKM 368
Query: 142 RDRELIPDGLTVRSLLCACT 161
+ P+ +T +LL C+
Sbjct: 369 QFVGPSPNAITFIALLTGCS 388
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
+I+ SS R L+ RKV D S S DVV ++ + G +++AR + D MP +N
Sbjct: 152 MIALYSSFRELRSARKVFD---ESYSLVDVVSWTTLITGFSNSGQIDEARKIFDLMPLKN 208
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+ SWNA+I+G A S NEA LF EM DR+
Sbjct: 209 TV------SWNAMISGYAGSSRINEARKLFDEMPDRD 239
>gi|116309314|emb|CAH66401.1| OSIGBa0155K12.4 [Oryza sativa Indica Group]
Length = 486
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 7/138 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+A+ FD ++ +R A ++S C+ L +L G++VH+++ ++ +P+V L
Sbjct: 212 EKAVRLFDRMRRE-GYRPDDVALAAVLSCCAQLGALDKGQEVHEYVRRTRPRPNVYLCTG 270
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
I+++Y KCG +E AR V D P++NV +WNA+I G+A + A+ F M
Sbjct: 271 IVDLYAKCGRVEVAREVFDACPEKNVF------TWNALIVGLAMHGHGTVALDYFDRMLV 324
Query: 144 RELIPDGLTVRSLLCACT 161
PDG T +L C+
Sbjct: 325 EGFRPDGTTFLGVLIGCS 342
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
R+V D + + PDVV N +++ Y K G L A V + MP+R+ + SW ++
Sbjct: 153 RRVFDRMRA----PDVVSHNALVHGYVKAGRLGLAVRVFEGMPERDAV------SWGTVV 202
Query: 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
AG A +A+ LF MR PD + + ++L C
Sbjct: 203 AGCAKAGRLEKAVRLFDRMRREGYRPDDVALAAVLSCCA 241
>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
Length = 708
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 69/116 (59%), Gaps = 6/116 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+ ++ TC+ L +++ G++VH + DV++++ ++++Y KCG +E A+ + D+MP
Sbjct: 422 FGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMP 481
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
RN+I +WN++I G A EA+ +F++M + PD ++ +L AC+
Sbjct: 482 VRNLI------TWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACS 531
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 77/139 (55%), Gaps = 8/139 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+ ++EAL F +Q + T+ +++ C +L L+ G++VH ++++ +VV+
Sbjct: 300 DFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVV 359
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
++ +++MYGKCGS+ +++ + D MP +N + SW+A++ G + + +F +
Sbjct: 360 ESSLVDMYGKCGSVGESQRIFDRMPIKNSV------SWSALLGGYCQNGDFKSVIQIFRK 413
Query: 141 MRDRELIPDGLTVRSLLCA 159
M +L G +R+ CA
Sbjct: 414 MEKVDLYCFGTILRT--CA 430
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + +I CS L L+LGR H +L + V+ + +++M+G+ +L+DAR + DE+
Sbjct: 222 TLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDEL 281
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSLLCAC 160
+ PD W +II+ + +EA+ F M RD + PDG T ++L AC
Sbjct: 282 LE------PDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTAC 332
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS-LEDARVV 100
+P YA L+ TC+ + + G ++H H++ S + D + N +L +Y K G+ + R V
Sbjct: 117 KPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKV 176
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
D + ++VI SW ++I+G ++ LF +M + P+ T+ +++ AC
Sbjct: 177 FDGLFVKDVI------SWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKAC 230
Query: 161 TSPSNV 166
+ ++
Sbjct: 231 SELGDL 236
>gi|21740620|emb|CAD40778.1| OSJNBb0012E08.2 [Oryza sativa Japonica Group]
Length = 486
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 7/138 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+A+ FD ++ +R A ++S C+ L +L G++VH+++ ++ +P+V L
Sbjct: 212 EKAVRLFDRMRRE-GYRPDDVALAAVLSCCAQLGALDKGQEVHEYVRRTRPRPNVYLCTG 270
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
I+++Y KCG +E AR V D P++NV +WNA+I G+A + A+ F M
Sbjct: 271 IVDLYAKCGRVEVAREVFDACPEKNVF------TWNALIVGLAMHGHGTVALDYFDRMLV 324
Query: 144 RELIPDGLTVRSLLCACT 161
PDG T +L C+
Sbjct: 325 EGFRPDGTTFLGVLIGCS 342
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+ PDVV N +++ Y K G L A V + MP+R+ + SW ++AG A
Sbjct: 155 VFDGMRAPDVVSHNALVHGYVKAGRLGLAVRVFEGMPERDAV------SWGTVVAGCAKA 208
Query: 129 SNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+A+ LF MR PD + + ++L C
Sbjct: 209 GRLEKAVRLFDRMRREGYRPDDVALAAVLSCCA 241
>gi|357116863|ref|XP_003560196.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 528
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 79/136 (58%), Gaps = 7/136 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F +Q + R +T+ ++ C+ L +L GR VH +++ ++ VV+ N +
Sbjct: 239 EALSWFREMQRSGCVRPDDATFVAVLGACADLGALDAGRWVHAYMMGRHTKA-VVVGNAL 297
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
L+MY KCG+++ A+ V D MP+R D+ ++ ++I+G+A EA++L ++MR
Sbjct: 298 LDMYAKCGAVDGAKEVFDAMPRR------DVYTYTSMISGLAMHGRGQEALALLADMRRA 351
Query: 145 ELIPDGLTVRSLLCAC 160
+ P+ +T +L AC
Sbjct: 352 GVRPNAVTFLGVLSAC 367
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM-PQRNVIESPDLAS 117
L L R+ H +L + DVV N +++MY KCG AR M P +NV+ S
Sbjct: 170 LGLARETHRRVLDAGVALDVVACNALIDMYAKCGDAAAARRCFRRMLPAKNVV------S 223
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCAC 160
WN +IA A + EA+S F EM+ + PD T ++L AC
Sbjct: 224 WNTMIAACARSGDTREALSWFREMQRSGCVRPDDATFVAVLGAC 267
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 66/138 (47%), Gaps = 6/138 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y AL F L + + T +S C L L LG+K+H S DV + +
Sbjct: 211 YELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGS 270
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG +EDAR V D +P RN + W ++IAG A EA+ LF EM+
Sbjct: 271 SLIDMYSKCGQIEDARKVFDRIPHRNTV------CWTSMIAGYAQSDLFKEAIELFREMQ 324
Query: 143 DRELIPDGLTVRSLLCAC 160
D T+ +L AC
Sbjct: 325 IGGFAADAATIACVLSAC 342
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 79/147 (53%), Gaps = 8/147 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+L+ EA+ F +Q F +T AC++S C +L GR +H + + + D+
Sbjct: 311 DLFKEAIELFREMQIG-GFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNA 369
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+N ++ MY KCG ++ A + + Q PD+ SW+A+I+G+A +++A+ LFS+
Sbjct: 370 RNALIGMYSKCGDIQKALEIFHGLTQ------PDIFSWSAVISGLAMNGESDKALHLFSQ 423
Query: 141 MR-DRELIPDGLTVRSLLCACTSPSNV 166
M ++ P+ +T +LCAC V
Sbjct: 424 MEMISDIRPNEITFLGVLCACNHGGFV 450
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++ ++ C+ L L GR++H L DV +QN +++ + CG++E AR V D +
Sbjct: 129 SFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDML 188
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE-MRDRELIPDGLTVRSLLCAC 160
P D+ SWN++I+G A+ +F E + D L PD +T+ S L C
Sbjct: 189 PAL----VRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVC 241
>gi|347954460|gb|AEP33730.1| chlororespiratory reduction 21, partial [Capsella bursa-pastoris]
Length = 820
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 13/144 (9%)
Query: 26 ALVAF-DFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
AL+ F + L+N I P + + C +L+ + GR VH ++L + + V + +
Sbjct: 146 ALMGFVEMLEN----EIFPDNFVVPNVFKACGALQWSRFGRGVHGYVLKAGLEDCVFVAS 201
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+ +MYGKCG L+DAR V DE+P+RNV+ +WNA++ G EA+ L S+MR
Sbjct: 202 SLADMYGKCGVLDDARKVFDEIPERNVV------AWNALMVGYVQNGMNEEAIRLLSDMR 255
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
+ P +TV + L A + + V
Sbjct: 256 KDGVEPTRVTVSTCLSASANMAGV 279
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A L+S + +L+LG++V + D+VL + ++MY KCGS+ DA+ V D
Sbjct: 366 TLATLMSAAARTENLKLGKEVQCXCFRHSLESDIVLASTAMDMYAKCGSIVDAKKVFDST 425
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
++ DL WN ++A A ++ EA+ LF EM+ + P+ +T
Sbjct: 426 VEK------DLILWNTLLAAYAESGHSGEALRLFYEMQLESVPPNVIT 467
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 11/142 (7%)
Query: 29 AFDFLQNNTNFRIRPSTYACLI--STCSSLRSLQLGRKVHDHILSS-KSQPDVVLQNYIL 85
A FL+ +RP+ ++ + S ++L S GR +H +I+ + + ++ ++
Sbjct: 519 AIHFLRKMQESGMRPNAFSITVALSASANLASXHFGRSIHGYIIRNLRHSSSASIETSLV 578
Query: 86 NMYGKCGSLEDA-RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+MY KCG + A RV ++ S +L +NA+I+ A N EA++L+ + D
Sbjct: 579 DMYAKCGDINKAERVFESKL-------SNELPLYNAMISAYALXGNVTEAVALYRSLEDM 631
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
PD +T SLL AC ++
Sbjct: 632 GXKPDSITFTSLLSACNHAGDI 653
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 8/127 (6%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLE 95
N RI P Y ++ C R L G+++H IL + + ++ ++ Y KC LE
Sbjct: 54 NLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNGDLYARNEYIETKLVIFYAKCDDLE 113
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
A V+ ++ RNV SW AII A+ F EM + E+ PD V +
Sbjct: 114 IAEVLFSKLRVRNVF------SWAAIIGVKCRMGLCEGALMGFVEMLENEIFPDNFVVPN 167
Query: 156 LLCACTS 162
+ AC +
Sbjct: 168 VFKACGA 174
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 72/150 (48%), Gaps = 10/150 (6%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
+QN NE A L + + P+ T + +S +++ ++ G + H + + +
Sbjct: 239 VQNGMNEE--AIRLLSDMRKDGVEPTRVTVSTCLSASANMAGVEEGTQCHAIAIVNGLEL 296
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D +L +LN Y K G +E A ++ D M +++V+ +WN +I+G +A+
Sbjct: 297 DNILGTSLLNFYCKVGLIEYAEMIFDRMFEKDVV------TWNLLISGYVQQGLVEDAIY 350
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+ MR +L D +T+ +L+ A N+
Sbjct: 351 MCQLMRLEKLKYDCVTLATLMSAAARTENL 380
>gi|302820671|ref|XP_002992002.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
gi|300140244|gb|EFJ06970.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
Length = 620
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 48/132 (36%), Positives = 73/132 (55%), Gaps = 9/132 (6%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSK-SQPDVVLQNYIL 85
AF F Q I+P T+ + C+++ +L+ GR +H +S + +VL N I+
Sbjct: 230 AFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTII 289
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
NMYGKCGS DA++V D+MP++ +I SWN++I A +A EA+S EM +
Sbjct: 290 NMYGKCGSPSDAKLVFDQMPEKCLI------SWNSLIVAYAHNGHALEALSSLQEMLLQG 343
Query: 146 LIPDGLTVRSLL 157
PD T S+L
Sbjct: 344 FDPDSGTSVSIL 355
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 27/146 (18%)
Query: 42 RPSTYACLIS--TCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP +I+ C++ L GR++H ++ S ++++ N ++NMYGKC + A
Sbjct: 7 RPDKVVFVIALDACAASGELDHGRQIHSSVVDSGLTSNIIISNSLVNMYGKCQDVPCAEK 66
Query: 100 VSDEMPQRNVIE-------------------------SPDLASWNAIIAGVASPSNANEA 134
V D M R+V+ D SWNA+I S +A
Sbjct: 67 VFDGMLLRDVVSWTAMLAVYAQNGCWSQALHVFEAMPRKDDVSWNAVINASVGNSKFQDA 126
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCAC 160
+ LF M L + T+ SLL AC
Sbjct: 127 LELFHGMELEGLRSNEFTLLSLLEAC 152
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD-VVLQNYILNMYGKCGSLEDARVVSDE 103
T L+ C L L+L R++H + + + N ++NMY +CGSL D + D
Sbjct: 144 TLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDTKKAFDS 203
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNAN--EAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ E L +W+ ++A A + + A F EM + P +T S L AC
Sbjct: 204 L------EEKGLVAWSIMLAAYAQSKDGSGRRAFKFFQEMEAEGIKPGEVTFVSALDACA 257
Query: 162 S 162
+
Sbjct: 258 A 258
>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
Length = 732
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/123 (36%), Positives = 72/123 (58%), Gaps = 8/123 (6%)
Query: 42 RPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
+P +AC ++++C SL +L+ GR+VH + + + + + ++N +++MY K L DA+
Sbjct: 236 KPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKK 295
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V D M ++NVI S+NA+I G +S +EA+ LF EMR R P LT SLL
Sbjct: 296 VFDVMAEQNVI------SYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGV 349
Query: 160 CTS 162
S
Sbjct: 350 SAS 352
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 8/139 (5%)
Query: 26 ALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+ V+ + + P Y + ++S CS L L+ G+++H ++L ++ DV + N
Sbjct: 119 SXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNV 178
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+++ Y KC ++ R + D+M +N+I SW +I+G S EAM LF EM
Sbjct: 179 LIDFYTKCNRVKAGRKLFDQMVVKNII------SWTTMISGYMQNSFDWEAMKLFGEMNR 232
Query: 144 RELIPDGLTVRSLLCACTS 162
PDG S+L +C S
Sbjct: 233 LGWKPDGFACTSVLTSCGS 251
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 71/137 (51%), Gaps = 6/137 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL+ F LQ + A +I C+ L ++ G ++H ++ S DV + +
Sbjct: 19 EALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSL 78
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++ Y K G +E AR+V D++ ++ + +W IIAG + ++ LF++MR+
Sbjct: 79 IDFYSKNGBIEVARLVFDQLLEKTAV------TWTTIIAGYTKCGRSXVSLELFAQMRET 132
Query: 145 ELIPDGLTVRSLLCACT 161
++PD V S+L AC+
Sbjct: 133 NVVPDRYVVSSVLSACS 149
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 48/150 (32%), Positives = 83/150 (55%), Gaps = 12/150 (8%)
Query: 20 QNLYNE-ALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
Q+L NE AL + LQ + R +P+ T+A LI+ S+L SL+ G++ H+ ++
Sbjct: 418 QHLENEEALKLYSTLQFS---RQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDF 474
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+ N +++MY KCGS+E+AR + + R+V+ WN++I+ A A EA+
Sbjct: 475 CPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVV------CWNSMISTHAQHGEAEEALG 528
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+F EM + P+ +T ++L AC+ V
Sbjct: 529 MFREMMKEGIQPNYVTFVAVLSACSHAGXV 558
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ +SL +L+L +++H I+ D+ + ++++Y KC ++DAR V +EM
Sbjct: 342 TFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEM 401
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
++ D+ WNA+ G EA+ L+S ++ P+ T +L+ A ++
Sbjct: 402 NEK------DIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASN 453
>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 822
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 78/144 (54%), Gaps = 14/144 (9%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N++ EAL + T++ + C+SL S++LG +VH + + + V +
Sbjct: 435 NMFREAL--------RNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAV 486
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MY KCG ++ A+ V +EM E+ D+ASWNA+I+G ++ +A+ +F
Sbjct: 487 SNSLIDMYAKCGDIKVAQTVFNEM------ETIDVASWNALISGYSTHGLGRQALRIFDI 540
Query: 141 MRDRELIPDGLTVRSLLCACTSPS 164
M+ + P+GLT +L C++
Sbjct: 541 MKGSDCKPNGLTFLGVLSGCSNAG 564
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Query: 11 FTFYNSQPIQNLYNEALVAFDFLQN-------NTNFRIRPS-------TYACLISTCSSL 56
F +N P ++ + + F QN + R+R T + +++ C+
Sbjct: 302 FKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIG 361
Query: 57 RSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLA 116
+ LG ++H ++ DV + N ++++Y KC ++ A + E+ +NV+
Sbjct: 362 KCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVV------ 415
Query: 117 SWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
SWN +I G + +A+++F E ++ +T S L AC S
Sbjct: 416 SWNTVIVGYENLGEGGKALNMFREALRNQVSVTEVTFSSALGACAS 461
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ + L + + VH IL + + D + +L +Y + G + DA V +EM
Sbjct: 249 TFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEM 308
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P+ +V+ W+ +IA N+A+ +F MR+ ++P+ T+ S+L C
Sbjct: 309 PKNDVV------PWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCA 359
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
Y ++ C + +H IL S D+ N +LN Y K G +DA + DEM
Sbjct: 51 AYGTMLRRCIRKNDSVSAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEM 110
Query: 105 PQRN 108
P+RN
Sbjct: 111 PERN 114
>gi|297799986|ref|XP_002867877.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313713|gb|EFH44136.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 760
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
L +AL+ F + + +TYA ++ +CS L SL GR+ H ++ S D ++
Sbjct: 484 LDTKALMLFRRMHQTSVLLPNETTYAIVLGSCSRLCSLVHGRQFHGQVVKSGYVSDSFVE 543
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+ +MY KCG +E AR D + ++N + WN +I G A +EA+ L+ EM
Sbjct: 544 TAVTDMYCKCGEIESARQFFDTVSRKNTV------IWNEMIHGYAHNGRGDEAVDLYREM 597
Query: 142 RDRELIPDGLTVRSLLCACT 161
PDG+T S+L AC+
Sbjct: 598 ISAGEKPDGITFVSVLTACS 617
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 53 CSSLRSLQ---LGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
C SL + LG+++H L ++ L N +L +Y K + A ++ EMP+ NV
Sbjct: 242 CDSLSEIYGNVLGKQIHSLALRRGFVGELHLNNSLLEIYAKNKDMNGAELIFTEMPEVNV 301
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+ SWN +IAG +++++ MRD P+ +T S+L AC +V
Sbjct: 302 V------SWNIMIAGFGQEYRSDKSIEYLKRMRDSGFEPNEVTCISILGACFRSGDV 352
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 74/140 (52%), Gaps = 7/140 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y EA+ F +Q N + +T + ++S+C+ LR L+ G+++H + +++ D + +
Sbjct: 383 YEEAINNFRQMQFQ-NLKPDRTTLSVILSSCARLRFLEGGKQIHGVAIRTETSEDSHIVS 441
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++ +Y +C +E + D + I D+A WN++I+G+ + +A+ LF M
Sbjct: 442 GLIAVYSECEKMEICECIFD-----DCINELDIACWNSMISGLRRNTLDTKALMLFRRMH 496
Query: 143 DRE-LIPDGLTVRSLLCACT 161
L+P+ T +L +C+
Sbjct: 497 QTSVLLPNETTYAIVLGSCS 516
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
RK+ D + S DV N L K G LE+A V D MP+R+V+ SWN +I
Sbjct: 47 RKLFDEM----SLRDVYSWNAFLTFRCKVGDLEEACEVFDGMPERDVV------SWNNMI 96
Query: 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ + +A+ ++ M +P T+ S+L AC+
Sbjct: 97 SVLVRKGFEEKALDVYGRMVGDGFLPSRFTLASVLSACS 135
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++S CS ++ +G + H + + ++ + N +L+MY KCG + D V
Sbjct: 126 TLASVLSACSKVQDGVIGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFMVDYGV----- 180
Query: 105 PQRNVIES---PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
V ES P+ S+ +I+G+A + EA+ +F M ++ + D + + ++L
Sbjct: 181 ---RVFESLSEPNEVSFTTVISGLARENKVLEAVHMFRLMCEKGVQVDCVCLSNIL 233
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 57 RSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLA 116
+S++ +++ D S +P+ V IL + G +E R + + +PQ P ++
Sbjct: 319 KSIEYLKRMRD----SGFEPNEVTCISILGACFRSGDVETGRRIFNTIPQ------PSVS 368
Query: 117 SWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+WNA+++G ++ + EA++ F +M+ + L PD T+ +L +C
Sbjct: 369 AWNAMLSGYSNYEHYEEAINNFRQMQFQNLKPDRTTLSVILSSCA 413
>gi|302805817|ref|XP_002984659.1| hypothetical protein SELMODRAFT_120613 [Selaginella moellendorffii]
gi|300147641|gb|EFJ14304.1| hypothetical protein SELMODRAFT_120613 [Selaginella moellendorffii]
Length = 322
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 70/124 (56%), Gaps = 4/124 (3%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P T+ S S S + G++VH H+L + + + +++N +++MY KCGSL++AR + D
Sbjct: 105 PDTFTFASSLNSCDSSSRFGKEVHGHVLEAGVEKNSIVENALVSMYVKCGSLQEARKIFD 164
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
M RN D SWN +I+ A A+E++ LF M+ + PDG+T +++ AC
Sbjct: 165 GMEHRN----RDSLSWNLVISSHAQHGFASESLLLFQRMKQEGMKPDGVTFLNIIAACGH 220
Query: 163 PSNV 166
V
Sbjct: 221 CGEV 224
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 5/108 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+S C SL SL+ + VH + ++ + D + N I+++YGKCGS++DA +V D++
Sbjct: 7 TFLALLSGCGSLASLEEAKLVHSYAAAAGLESDAAVSNTIISLYGKCGSIQDAELVFDKL 66
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
+ D+ SWNA++ A A L+ + + PD T
Sbjct: 67 GRNR-----DIVSWNAMMDAYAENEQETGASKLYRVILLEGMAPDTFT 109
>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
Length = 941
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 48/132 (36%), Positives = 73/132 (55%), Gaps = 9/132 (6%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSK-SQPDVVLQNYIL 85
AF F Q I+P T+ + C+++ +L+ GR +H +S + +VL N I+
Sbjct: 551 AFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTII 610
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
NMYGKCGS DA++V D+MP++ +I SWN++I A +A EA+S EM +
Sbjct: 611 NMYGKCGSPSDAKLVFDQMPEKCLI------SWNSLIVAYAHNGHALEALSSLQEMLLQG 664
Query: 146 LIPDGLTVRSLL 157
PD T S+L
Sbjct: 665 FDPDSGTSVSIL 676
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 8/122 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
++P+ T+ ++ C+ LR L LGRK+H I++ +PD +L N +++MYG CGS +D +
Sbjct: 155 VKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINEGLEPDGILGNALVHMYGSCGSFDDMK 214
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V M Q +V+ W +IAG + E + +F +M + + +T S++
Sbjct: 215 SVFSRMGQSSVL------LWTTMIAGCSQNGQYEEGLLVFRKMDLEGVKANEVTYMSMVE 268
Query: 159 AC 160
C
Sbjct: 269 VC 270
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHIL-SSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
TY ++ C++L +L GR++H +L Q +V + N ++ MYGKCG E A V +
Sbjct: 363 TYLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEA 422
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
MP++ D SWNA+I S +A+ LF M L + T+ SLL AC
Sbjct: 423 MPRK------DDVSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEAC 473
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLIS--TCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y EAL F +Q RP +I+ C++ L GR++H ++ S ++++
Sbjct: 39 YREALELFTRMQWEGT---RPDKVVFVIALDACAASGELDHGRQIHSSVVGSGLTSNIII 95
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N ++NMYGKC + A V D M R+V+ SW A++A A ++A+ S
Sbjct: 96 SNSLVNMYGKCQDVPCAEKVFDGMLLRDVV------SWTAMLAVYAQNGCWSQALECLSR 149
Query: 141 MRDRELIPDGLTVRSLLCAC 160
M + P+ +T +++ C
Sbjct: 150 MDAEGVKPNQVTFVTIVDVC 169
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y E L+ F + + + TY ++ C +L +++ G + IL S +L
Sbjct: 241 YEEGLLVFRKM-DLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLAT 299
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++++YG+CG L+ A+ + + M QR+V+ +WNA++ A + EA+ L M
Sbjct: 300 SLISLYGQCGILDRAKGLLEHMYQRDVV------AWNAMVTACAQNGDNWEAIHLLRRMD 353
Query: 143 DRELIPDGLTVRSLLCACTS 162
+ +T S+L AC +
Sbjct: 354 MEGFGANKVTYLSVLEACAN 373
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD-VVLQNYILNMYGKCGSLEDARVVSDE 103
T L+ C L L+L R++H + + + N ++NMY +CGSL DA+ D
Sbjct: 465 TLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDS 524
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSN--ANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ E L +W+ I+A A + A F EM + P +T S L AC
Sbjct: 525 L------EEKGLVAWSIILAAYAQSKDGPGRRAFKFFQEMEAEGIKPGEVTFVSALDACA 578
Query: 162 S 162
+
Sbjct: 579 A 579
Score = 42.7 bits (99), Expect = 0.055, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MYGKC + DA +V D + +NV SW ++A + + EA+ LF+ M+
Sbjct: 1 MYGKCARVTDALMVFDGISAKNVF------SWTMMMAAYSQNGHYREALELFTRMQWEGT 54
Query: 147 IPDGLTVRSLLCACTS 162
PD + L AC +
Sbjct: 55 RPDKVVFVIALDACAA 70
>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 939
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 8/135 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A F ++P TYA ++ C++L S+ LG+++H I+ + DV + + +++
Sbjct: 564 AHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVD 623
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG+++D+ +V ++ P + D +WNA+I G A EA+ F M+ +
Sbjct: 624 MYSKCGNMQDSALVFEKAPNK------DFVTWNAMICGYAQHGLGEEALGYFERMQLENV 677
Query: 147 IPDGLTVRSLLCACT 161
P+ T S+L AC
Sbjct: 678 RPNHATFVSILRACA 692
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 71/130 (54%), Gaps = 8/130 (6%)
Query: 39 FRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
R+ P TY ++ CSS ++L G ++H+ I+ S D + +++MY KCG +E+
Sbjct: 473 LRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEE 532
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
A+ + D + Q+ ++ SWNAIIAG ++ +A S F EM + PD T +
Sbjct: 533 AKKIHDRIEQQTMV------SWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIV 586
Query: 157 LCACTSPSNV 166
L AC + ++V
Sbjct: 587 LDACANLASV 596
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 6/113 (5%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
S C+S++ GR++H + S + ++ + N IL+MYGKC +L +A + DEM +R
Sbjct: 385 FSACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERR-- 442
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
D SWNA+IA N E ++LF+ M + PD T S+L AC+S
Sbjct: 443 ----DAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSS 491
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 12/132 (9%)
Query: 22 LYNEALVAFDFL------QNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQ 75
LYN+ L F F QN T + T++ +I CS SL+ G++ H ++ S
Sbjct: 16 LYNKTLRIFTFCTISTLQQNQTKLPTKIRTFSHIIQECSDYNSLKPGKQAHARMIVSGFI 75
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
PDV + N ++ MY +C L A V ++M QR+VI S+N +I+G A N A
Sbjct: 76 PDVYISNCLMKMYLRCSHLNYAYKVFEKMSQRDVI------SYNTMISGYADAGEMNLAN 129
Query: 136 SLFSEMRDRELI 147
F + R+++
Sbjct: 130 EFFYDTPKRDVV 141
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 19 IQNLYNEALVAFDFLQN--NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
+QN +E ++ + + + S YA + +C+ L +L++G ++H H L
Sbjct: 253 VQN--DEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGS 310
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D+ + L+MY KCGSL DA+ + + +P+ + L +NAII G EA+
Sbjct: 311 DITVGTATLDMYAKCGSLADAQRIFNSLPKHS------LQCYNAIIVGCVRNEKGFEALQ 364
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTS 162
F + L + +++ AC S
Sbjct: 365 FFQLLLKSGLGFNEISLSGAFSACAS 390
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T+A ++ CS L LG +VH I+ DVV + +L+MY KC L+D+ + E
Sbjct: 177 TTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSE 236
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+P +N + W+AIIAG + LF EM+
Sbjct: 237 IPVKNWV------CWSAIIAGCVQNDEHILGLELFKEMQ 269
>gi|302774729|ref|XP_002970781.1| hypothetical protein SELMODRAFT_11658 [Selaginella moellendorffii]
gi|300161492|gb|EFJ28107.1| hypothetical protein SELMODRAFT_11658 [Selaginella moellendorffii]
Length = 517
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 21/165 (12%)
Query: 12 TFYNSQPIQNLYNEALVAFDFLQNN---------------TNFRIRPSTYACLISTCSSL 56
+ ++ P +NL++ +++ + QN + I +TY +S CS+L
Sbjct: 54 SIFDKTPERNLFSWSIMIAAYAQNGHPTFALAVYREMLQRSIHAIDSTTYVSALSACSAL 113
Query: 57 RSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLA 116
L+ G+ +H+ ILSSK + D L +++MY KCG LE+A D + +++++
Sbjct: 114 GDLETGKSIHERILSSKLEIDAFLGTALISMYSKCGCLEEAHECFDCVLRKDIV------ 167
Query: 117 SWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
WNA+IA A + A++ F + EL P+ LT+ S L AC+
Sbjct: 168 VWNAMIAAFAQNGHPQRALNFFHAIPRGELQPNNLTLVSALDACS 212
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 66/118 (55%), Gaps = 7/118 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
YA L+ CS RSL GR++H IL + +L N ++ MYG+CG L++AR + D+ P
Sbjct: 1 YAPLLRQCSKQRSLHSGRRLHAQILRHRLDRHTLLCNLLVQMYGRCGCLDEARSIFDKTP 60
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP-DGLTVRSLLCACTS 162
+RN L SW+ +IA A + A++++ EM R + D T S L AC++
Sbjct: 61 ERN------LFSWSIMIAAYAQNGHPTFALAVYREMLQRSIHAIDSTTYVSALSACSA 112
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 18/139 (12%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ----N 82
A +F ++P+ T + CS L +L+ GRK+H I +S P++ L N
Sbjct: 185 ALNFFHAIPRGELQPNNLTLVSALDACSDLAALEEGRKIHALI---ESSPELTLGGSMGN 241
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++N+YGKCG DAR V D + R V+ SW ++IA A ++++A+ LF M
Sbjct: 242 ALVNLYGKCGRAIDARAVFDALRPRTVV------SWTSMIAAYAQNGHSDQALELFQRM- 294
Query: 143 DRELIPDGLTVRSLLCACT 161
++ P+G+T+ S+L AC+
Sbjct: 295 --DMAPNGVTLLSVLQACS 311
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 45 TYACLISTCSSLR-SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T ++ CS R G+ +H HI + +L + ++NMYGK G+L+ A VV +
Sbjct: 302 TLLSVLQACSEHRKGSHAGKTIHAHIRLAGFDGSPLLDSALVNMYGKVGNLDSAMVVFTQ 361
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
M +R+ I +W A+I+ A ++ +A+SLFS M + D +T+ + AC+
Sbjct: 362 MRERDAI------TWTAMISSYAQHGHSRQALSLFSSMLLDGIATDAVTLACVSSACSHS 415
Query: 164 SNV 166
+V
Sbjct: 416 GDV 418
>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
Length = 818
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 8/120 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ +CSS + GR +H+ I S+ + D ++ N +++MYGKC SL DAR V + M
Sbjct: 9 TFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESM 68
Query: 105 P--QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
QRNV+ SWNA+IA A ++ EA+ L+ M + L D +T S+L AC+S
Sbjct: 69 DWRQRNVV------SWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS 122
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/169 (30%), Positives = 77/169 (45%), Gaps = 30/169 (17%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
++EAL + L + F+ +T+ ++ CSS+++L GR VH HIL +V +
Sbjct: 289 FHEALELYQKL-DMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVAT 347
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIE----------------------------SPD 114
++NMY KCGSLE+AR V + M R+ + S D
Sbjct: 348 ALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRD 407
Query: 115 LASWNAIIAGVASPSNANEAMSLFSEMRDRE-LIPDGLTVRSLLCACTS 162
WNA+I A AM +F EM L PD +T ++L AC S
Sbjct: 408 TICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACAS 456
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 6/131 (4%)
Query: 32 FLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91
F + + + +TY +IS S+ L GRK+H I+++ D+V+ ++NMYGKC
Sbjct: 196 FKEMKCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKC 255
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL 151
GS +AR V D+M +R D+ SWN +I + +EA+ L+ ++
Sbjct: 256 GSSHEAREVFDKMKKR------DMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKA 309
Query: 152 TVRSLLCACTS 162
T S+L AC+S
Sbjct: 310 TFVSILGACSS 320
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C+SL L + +H I S+ + +VV+ N ++NMY +CGSLE+A +
Sbjct: 446 TFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAA 505
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++ V+ SW A++A + EA+ LF EM + PD +T S+L CT
Sbjct: 506 KEKTVV------SWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCT 556
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ CSSL GR++H+ + S L N ++ MY + GS+ DA+ + +
Sbjct: 112 TFVSVLGACSSLAQ---GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSL 168
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
R D SWNA+I + + + A+ +F EM+ ++ P+ T +++ ++P
Sbjct: 169 QTR------DETSWNAVILAHSQSGDWSGALRIFKEMK-CDMKPNSTTYINVISGFSTP 220
>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14330-like [Glycine max]
Length = 650
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 7/137 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
E L AF +Q T ++ C+ + +L G+++H IL S+ DV L N +
Sbjct: 260 ETLSAFRVMQRE-GMGFSWITLTTMLPVCAQVTALHSGKEIHGQILKSRKNADVPLLNSL 318
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MY KCG + V D M S DL SWN ++AG + +EA+ LF EM
Sbjct: 319 MDMYAKCGEIGYCEKVFDRM------HSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRY 372
Query: 145 ELIPDGLTVRSLLCACT 161
+ P+G+T +LL C+
Sbjct: 373 GIEPNGITFVALLSGCS 389
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 9/124 (7%)
Query: 41 IRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSK-SQPDVVLQNYILNMYGKCGSLEDA 97
++P +A + CS L + +GR +H I+ + D V+ N +L +Y + G ++
Sbjct: 171 VKPGNFAFSMALKACSDLDNALVGRAIHAQIVKHDVGEADQVVNNALLGLYVEIGCFDEV 230
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
V +EMPQRNV+ SWN +IAG A E +S F M+ + +T+ ++L
Sbjct: 231 LKVFEEMPQRNVV------SWNTLIAGFAGQGRVFETLSAFRVMQREGMGFSWITLTTML 284
Query: 158 CACT 161
C
Sbjct: 285 PVCA 288
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 12/124 (9%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQ--PDVVLQNYILNMYGKCGSLEDARVV---SDE 103
+ C S RSL+ GRK+H H+L S+++ + L+ ++ +Y CG + +AR V DE
Sbjct: 76 FLHACISRRSLEHGRKLHLHLLRSQNRVLENPTLKTKLITLYSVCGRVNEARRVFQIDDE 135
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
P P+ W A+ G + ++EA+ L+ +M + P L AC+
Sbjct: 136 KP-------PEEPVWVAMAIGYSRNGFSHEALLLYRDMLSCCVKPGNFAFSMALKACSDL 188
Query: 164 SNVL 167
N L
Sbjct: 189 DNAL 192
>gi|125528598|gb|EAY76712.1| hypothetical protein OsI_04667 [Oryza sativa Indica Group]
Length = 548
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 87/162 (53%), Gaps = 20/162 (12%)
Query: 14 YNSQPIQNLYN-EALVA-----------FDFLQNNTNFRIRPS--TYACLISTCSSLRSL 59
++ P++NL N AL+A + + +I+P T A ++S C+ L SL
Sbjct: 239 FDKIPVRNLVNWNALIAGYAKMGCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQLGSL 298
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
+ RKVH+ I+ + + + + N +++M+ KCG L AR + D M RN WN
Sbjct: 299 EQARKVHNFIIQHRIRKNQFVMNGLVDMFAKCGDLAFARNIFDNMQWRNT------ECWN 352
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++I+ ++S + EA+ LFS+M E P+ +T+ ++L ACT
Sbjct: 353 SMISALSSHGQSIEAIRLFSKMECSEQKPNEITLLAVLGACT 394
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+ +S LGR +H + S + D ++ ++++Y KCG L DAR V D M RN
Sbjct: 61 LLKATASRADPVLGRALHAEAVKSANAHDRLVGTTLVSVYCKCGLLADARRVFDGMLDRN 120
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+ + NA++AG A+ + A +LF+ M R
Sbjct: 121 AV------TCNAMLAGYAAAGDMVSAEALFAGMGSR 150
Score = 38.1 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+VV + Y G +E AR + ++MP RN W++++ G NA+EA +
Sbjct: 184 NVVTWTVAVQAYVAAGDMETARELFNKMPARNAF------VWSSMVTGNFKAGNADEAQA 237
Query: 137 LFSEMRDRELI 147
+F ++ R L+
Sbjct: 238 VFDKIPVRNLV 248
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 82/140 (58%), Gaps = 11/140 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
++EAL F +Q + +RP A + IS C+ L +L LG+ +H +I +K Q +V+L
Sbjct: 384 FSEALALFQEMQLHG---VRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVIL 440
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+++MY KCG +E+A V M ++ V ++WNA+I G+A + +++++F++
Sbjct: 441 STTLIDMYMKCGCVENALEVFYAMEEKGV------STWNAVILGLAMNGSVEQSLNMFAD 494
Query: 141 MRDRELIPDGLTVRSLLCAC 160
M+ +P+ +T +L AC
Sbjct: 495 MKKTGTVPNEITFMGVLGAC 514
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 13/132 (9%)
Query: 19 IQNLYNEALVAFD-FLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQ 75
+QN ++AL+ + FL ++ +P TY L+ C++ S GR++H H +SS
Sbjct: 82 LQNSPHQALLHYKLFLASHA----KPDSYTYPILLQCCAARVSEFEGRQLHAHAVSSGFD 137
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
DV ++N ++N+Y CGS+ AR V +E P DL SWN ++AG EA
Sbjct: 138 GDVYVRNTLMNLYAVCGSVGSARRVFEESP------VLDLVSWNTLLAGYVQAGEVEEAE 191
Query: 136 SLFSEMRDRELI 147
+F M +R I
Sbjct: 192 RVFEGMPERNTI 203
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 39/169 (23%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EALV F ++ + + L S CS + ++++GR VH + + V L+N +
Sbjct: 253 EALVLFVEMKGSGVAVDEVVVVSAL-SACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNAL 311
Query: 85 LNMYGKCGSLEDARVVSDE--------------------------------MPQRNVIES 112
+++Y CG + DAR + D+ MP+++V+
Sbjct: 312 IHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVV-- 369
Query: 113 PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
SW+A+I+G A +EA++LF EM+ + PD + S + ACT
Sbjct: 370 ----SWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACT 414
>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Vitis vinifera]
Length = 847
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AF F + + PS +YA ++S C+ L SL GR+VH I D + + +++
Sbjct: 504 AFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALID 563
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG ++ AR V D M +N + +WN +I G A +EA+ L+ +M
Sbjct: 564 MYSKCGDVDAARWVFDMMLGKNTV------TWNEMIHGYAQNGCGDEAVLLYEDMIGSGE 617
Query: 147 IPDGLTVRSLLCACT 161
PDG+T ++L AC+
Sbjct: 618 KPDGITFVAVLTACS 632
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Query: 43 PSTY-ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
+TY A L+ TC ++ G+ +H H+L S+ D L N ++ Y KC +++ +R +
Sbjct: 4 KTTYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLF 63
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
D+MP+R D+ +WNAI+ S +A LF+EM +R ++
Sbjct: 64 DQMPKR------DIYTWNAILGAYCKASELEDAHVLFAEMPERNIV 103
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 78/147 (53%), Gaps = 13/147 (8%)
Query: 23 YNEALVAFDFLQNNTNFR-IRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
+ EA+ F +Q FR + P +T A ++S+ + + L+ GR+VH + + D+
Sbjct: 400 HKEAVKLFREMQ----FRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIY 455
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
L + ++ MY KCG +E A+ + D I D+ WN+++AG++ S EA + F
Sbjct: 456 LASGLIGMYSKCGKVEMAKRIFDR------IAELDIVCWNSMMAGLSLNSLDKEAFTFFK 509
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNV 166
+MR++ + P + ++L C S++
Sbjct: 510 KMREKGMFPSQFSYATVLSCCAKLSSL 536
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
G++VH + + D+ L N +L+MY K G+++ A ++ MP+ +V+ SWN +
Sbjct: 271 GQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVV------SWNVM 324
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
IAG S +++A+ M+ PD +T ++L AC ++
Sbjct: 325 IAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDI 369
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++S C +L ++ GR+ H + ++ + N +L MY KC + DA ++
Sbjct: 139 TLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDV 198
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P+ P+ S+ A++ G+A NEA LF M + D +++ S+L C+
Sbjct: 199 PE------PNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCS 249
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+PD + +L K G +E R + D M SP L+SWN I++G + N EA
Sbjct: 350 EPDEITYVNMLVACIKSGDIEAGRQMFDGMS------SPSLSSWNTILSGYSQNENHKEA 403
Query: 135 MSLFSEMRDRELIPDGLTVRSLL 157
+ LF EM+ R + PD T+ +L
Sbjct: 404 VKLFREMQFRSVHPDRTTLAIIL 426
>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 881
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 71/117 (60%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TYA ++ C++L +++LG+++H IL + DV + + I++MY KCG+++D+R++ ++
Sbjct: 576 TYATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKA 635
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P+R D +W+A+I A +A+ LF EM+ + + P+ S+L AC
Sbjct: 636 PKR------DYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACA 686
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C+ ++L G +VH ++ S D + + I++MY KCG L +A + + +
Sbjct: 475 TFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERL 534
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+R + SWN+II+G +S A+S FS M +IPD T ++L C + +
Sbjct: 535 EERTTV------SWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLA 588
Query: 165 NV 166
V
Sbjct: 589 TV 590
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
+ T++ + CS+L+++ G++ H I + P V + N +L Y KC +L A V
Sbjct: 37 KKLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVF 96
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
D+MPQR+VI SWN +I G A N A LF M +R+++
Sbjct: 97 DKMPQRDVI------SWNTMIFGYAGVGNMEFAQFLFDSMPERDVV 136
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
++ CS+++ G ++H + ++ + N IL+MY KCG+L +A ++ D+M
Sbjct: 379 LTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDM----- 433
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
E D SWNAIIA + E ++LF M + PD T S++ AC + Y
Sbjct: 434 -EIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNY 491
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
+ +T+A +C+ L + +LG ++H + L + D ++ L+MY KC + DAR V
Sbjct: 269 VSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKV 328
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ P +P S NA+I G A EA+ +F ++ L D +++ L AC
Sbjct: 329 FNTFP------NPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTAC 382
Query: 161 TSPSNVL 167
++ L
Sbjct: 383 SAIKGYL 389
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T+A ++ C+ + LG +VH + DVV +++MY C L+ A + E
Sbjct: 171 ATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCE 230
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
MP+RN + W+A+IAG E + L+ M D + T S +C
Sbjct: 231 MPERNSV------CWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGL 284
Query: 164 S 164
S
Sbjct: 285 S 285
>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
gi|194692242|gb|ACF80205.1| unknown [Zea mays]
gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
Length = 590
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 77/139 (55%), Gaps = 8/139 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
EA A ++ Q+ +RP A + +S C+ L +L+ GR +H ++ K DVV+Q
Sbjct: 291 EAKEALEYFQSMLRCGLRPDRIAAVGAVSACAQLGALEQGRWLHSYLEKKKLLSDVVVQT 350
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG L+ A ++ + M +R+V+ +WN +I G+ + +A++LF M
Sbjct: 351 ALIDMYVKCGCLDLAMLIFESMAERSVV------TWNVMIVGLGTHGFGLDAVTLFHRME 404
Query: 143 DRELIPDGLTVRSLLCACT 161
+ D L+V +L ACT
Sbjct: 405 AESVAVDDLSVLGMLTACT 423
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D+V N +++ Y + G +++AR + +EMP+RNVI SW+ +I G S A EA+
Sbjct: 244 DLVCWNSMIDGYARHGRMDEARSLFEEMPERNVI------SWSIVIDGHVSCGEAKEALE 297
Query: 137 LFSEMRDRELIPDGLTVRSLLCAC 160
F M L PD + + AC
Sbjct: 298 YFQSMLRCGLRPDRIAAVGAVSAC 321
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 29/130 (22%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T LIS + ++ GRKV D + D+V N ++ Y CG + A+ + DEM
Sbjct: 150 TVNALISFYCRILDIRSGRKVFDE--AGGVSRDLVSWNSMVAGYVGCGEMGLAQEMFDEM 207
Query: 105 PQRNV---------------------------IESPDLASWNAIIAGVASPSNANEAMSL 137
PQ++ + DL WN++I G A +EA SL
Sbjct: 208 PQKDTFSWATLIDGYGKQGGAGVDRARELFDQMPERDLVCWNSMIDGYARHGRMDEARSL 267
Query: 138 FSEMRDRELI 147
F EM +R +I
Sbjct: 268 FEEMPERNVI 277
Score = 38.9 bits (89), Expect = 0.75, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP T+ ++ C + G VH + D+ N +++ Y + + R
Sbjct: 109 VRPDAYTFPAVLKACGCAPGCRAGLLVHAEAVRRGLAADLFTVNALISFYCRILDIRSGR 168
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
V DE S DL SWN+++AG A +F EM ++
Sbjct: 169 KVFDEAGG----VSRDLVSWNSMVAGYVGCGEMGLAQEMFDEMPQKD 211
>gi|147801011|emb|CAN60119.1| hypothetical protein VITISV_016375 [Vitis vinifera]
Length = 711
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 79/154 (51%), Gaps = 11/154 (7%)
Query: 13 FYNSQPIQNLYNEALVAFDFLQ-----NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHD 67
F ++ I +E + + D L N N + +++ C++L S LG ++H
Sbjct: 420 FSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHA 479
Query: 68 HILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127
L + DV + N +++MY K G +EDA+ DEM ++NVI SW ++I+G A
Sbjct: 480 FALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVI------SWTSLISGYAK 533
Query: 128 PSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ A+SL+ +M + P+ +T SLL AC+
Sbjct: 534 HGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACS 567
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY + C+SLR L +G +V I + ++ +++ +++ + KCG +EDA + M
Sbjct: 254 TYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTM 313
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+R+V+ SWNA+I G A A+++ +F M L+PD T+ S+L A
Sbjct: 314 MERDVV------SWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRA 362
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 14/157 (8%)
Query: 6 KTQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKV 65
K ++ F +++ + L+ E F+++ ++ Y ++ C ++ + G +
Sbjct: 122 KRKIYFADLSTESARELFTE------FVKDWNKQKLESKYYEGIL--CIDKKAKKQGHLI 173
Query: 66 HDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGV 125
H H++++ D+ L ++ Y K G + AR V D MP+R+V+ SW A+++G
Sbjct: 174 HTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVV------SWTAMVSGY 227
Query: 126 ASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ +A LFS+MR + + T S L ACTS
Sbjct: 228 SQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTS 264
>gi|302785437|ref|XP_002974490.1| hypothetical protein SELMODRAFT_101245 [Selaginella moellendorffii]
gi|300158088|gb|EFJ24712.1| hypothetical protein SELMODRAFT_101245 [Selaginella moellendorffii]
Length = 381
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 78/147 (53%), Gaps = 6/147 (4%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS 74
+ +Q + EALV F L+ + T+ I C+ L+ GR++H +++S
Sbjct: 116 KAYALQGEFGEALVLFQRLEAEKEVKPDRVTFVVAIDCCACKPCLEEGRRIHASVVASGL 175
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
D+++ N ++NMYGKCG + AR + D+M R+V+ +W++++A AS + E
Sbjct: 176 DLDLIIGNTLVNMYGKCGQVGTARGLFDKMIVRDVV------TWSSLLATYASNGHGMEG 229
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCACT 161
+ LF M+ P+ +T +L AC+
Sbjct: 230 LELFRLMQQDYTEPNEVTFLGVLFACS 256
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 31/146 (21%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
+++ + C+ ++L+ G+ +HD + S S+ V + N + N YG+CG EDAR++ D+M
Sbjct: 12 SFSSALDACAHAKALEFGKAIHDSLGCSDSRA-VCVNNALTNFYGRCGRPEDARIIFDQM 70
Query: 105 PQRN------------------------VIES---PDLASWNAIIAGVASPSNANEAMSL 137
P R+ V ES ++ +WN I+ A EA+ L
Sbjct: 71 PMRDTDVVVCNTLLSMYAKSGTSADARAVFESMSRRNVITWNGIMKAYALQGEFGEALVL 130
Query: 138 FSEMR-DRELIPDGLTVRSLL--CAC 160
F + ++E+ PD +T + CAC
Sbjct: 131 FQRLEAEKEVKPDRVTFVVAIDCCAC 156
>gi|21952815|dbj|BAC06231.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125572862|gb|EAZ14377.1| hypothetical protein OsJ_04297 [Oryza sativa Japonica Group]
gi|215697551|dbj|BAG91545.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 548
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 87/162 (53%), Gaps = 20/162 (12%)
Query: 14 YNSQPIQNLYN-EALVA-----------FDFLQNNTNFRIRPS--TYACLISTCSSLRSL 59
++ P++NL N AL+A + + +I+P T A ++S C+ L SL
Sbjct: 239 FDKIPVRNLVNWNALIAGYAKMGCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQLGSL 298
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
+ RKVH+ I+ + + + + N +++M+ KCG L AR + D M RN WN
Sbjct: 299 EQARKVHNFIIQHRIRKNQFVMNGLVDMFAKCGDLAFARNIFDNMQWRNT------ECWN 352
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++I+ ++S + EA+ LFS+M E P+ +T+ ++L ACT
Sbjct: 353 SMISALSSHGQSIEAIRLFSKMECSEQKPNEITLLAVLGACT 394
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+ +S LGR +H + S + D ++ ++++Y KCG L DAR V D M RN
Sbjct: 61 LLKATASRADPVLGRALHAEAVKSANAHDRLVGTTLVSVYCKCGLLADARRVFDGMLDRN 120
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+ + NA++AG A+ + A +LF+ M R
Sbjct: 121 AV------TCNAMLAGYAAAGDMVSAEALFAGMGSR 150
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+VV + Y G +E AR + ++MP RN W++++ G NA+EA +
Sbjct: 184 NVVTWTVAVQAYVAAGDMETARELFNKMPARNAF------VWSSMVTGNFKAGNADEAQA 237
Query: 137 LFSEMRDRELI 147
+F ++ R L+
Sbjct: 238 VFDKIPVRNLV 248
>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Glycine max]
Length = 691
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/119 (34%), Positives = 72/119 (60%), Gaps = 7/119 (5%)
Query: 21 NLYNEALVAFDFLQ-NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
N + EA+ F+ L+ + + + STY L+S C LRS++ ++V +++++S +PD+
Sbjct: 95 NRHREAMELFEILELEHDGYGVGASTYDALVSACVGLRSIRGVKRVFNYMINSGFEPDLY 154
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N +L M+ KCG + DAR + DEMP++ D+ASW ++ G+ N +EA LF
Sbjct: 155 VMNRVLFMHVKCGLMLDARKLFDEMPEK------DVASWMTMVGGLVDTGNFSEAFRLF 207
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Query: 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
R T+A +I + L +Q+G+++H L D + +++MY KCGS+EDA V
Sbjct: 218 RSRTFATMIRASAGLGLVQVGKQIHSCALKRGVGDDHFVSCALIDMYSKCGSIEDAHCVF 277
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
D+MP++ + WN+IIA A + EA+SL+ EMRD D T+ ++ C
Sbjct: 278 DQMPEKTTV------GWNSIIASYALHGYSEEALSLYFEMRDSGTTVDHFTISIVIRIC 330
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y+E ++ F ++ + T + +I C+ L SL+ ++ H ++ D+V
Sbjct: 300 YSEEALSLYFEMRDSGTTVDHFTISIVIRICARLASLEHAKQAHAALVRHGFATDIVANT 359
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++ Y K G +EDAR V + M +NVI SWNA+IAG + EA+ +F +M
Sbjct: 360 ALVDFYSKWGRMEDARHVFNRMRHKNVI------SWNALIAGYGNHGQGQEAVEMFEQML 413
Query: 143 DRELIPDGLTVRSLLCACT 161
+ P +T ++L AC+
Sbjct: 414 QEGVTPTHVTFLAVLSACS 432
>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
Length = 807
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 1 MIRNLKTQLRFTFYNSQ----PIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSL 56
+I N+ T+ +NS I +L EA F ++ N F S+YA +I++C+ L
Sbjct: 474 IIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRENGMFPTE-SSYASMINSCARL 532
Query: 57 RSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLA 116
S+ GR++H +L +V + + +++MY KCG+++DAR+ + M +N++
Sbjct: 533 SSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLFFNCMIVKNIV------ 586
Query: 117 SWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+WN +I G A +A+ LF M + PD +T ++L C+
Sbjct: 587 AWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCS 631
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 82/147 (55%), Gaps = 7/147 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
+ L+ + + F +Q+ N + +T A ++STCS L L+LG++VH + D+
Sbjct: 396 EELHQDTIELFRRMQHQ-NVQPDRTTLAVILSTCSRLGILELGKQVHSASVKLLLHNDMF 454
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ + +++MY KCG + A+++ + M +R+V+ WN++I+G+A S EA F
Sbjct: 455 VASGLIDMYSKCGQVGIAQIIFNMMTERDVV------CWNSMISGLAIHSLNEEAFDFFK 508
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNV 166
+MR+ + P + S++ +C S++
Sbjct: 509 QMRENGMFPTESSYASMINSCARLSSI 535
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 11/125 (8%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
TNF T A ++S C ++ +L GR+ H + + ++N +L MY KCGS+ D
Sbjct: 141 TNF-----TLASVLSACGAVAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVAD 195
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
A + D M SP+ S+ A++ G+A ++A+ LF+ M + D + V S+
Sbjct: 196 AVRLFDWM------SSPNEVSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSV 249
Query: 157 LCACT 161
L AC
Sbjct: 250 LGACA 254
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+P+V N ++ + G L AR + MP RN + SWN +IA VA + EA
Sbjct: 73 RPNVYSYNAAISAACRAGDLAAARDLLGRMPDRNAV------SWNTVIAAVARSDSPGEA 126
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ ++ M L P T+ S+L AC +
Sbjct: 127 LEMYRGMLQEGLAPTNFTLASVLSACGA 154
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/136 (18%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 39 FRIRPSTYACLISTCSSL--------RSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90
R+ P + ++ C+ R+++L + +H ++ D + N +++MY K
Sbjct: 239 IRVDPVAVSSVLGACAQACAGDYNVARAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAK 298
Query: 91 CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDG 150
+++A V + M +++ SWN ++ G A+ + M++ P+
Sbjct: 299 GMKMDEAMKVFESMSSVSIV------SWNILVTGYGQLGCYERALEVLDLMQESGFEPNE 352
Query: 151 LTVRSLLCACTSPSNV 166
+T ++L +C +V
Sbjct: 353 VTYSNMLASCIKARDV 368
Score = 35.0 bits (79), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++ L++ L + +V D + S +P+ V + +L K + AR + D+
Sbjct: 319 SWNILVTGYGQLGCYERALEVLDLMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDK- 377
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I P + +WN +++G + + LF M+ + + PD T+ +L C+
Sbjct: 378 -----ISKPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCS 429
>gi|242072866|ref|XP_002446369.1| hypothetical protein SORBIDRAFT_06g014910 [Sorghum bicolor]
gi|241937552|gb|EES10697.1| hypothetical protein SORBIDRAFT_06g014910 [Sorghum bicolor]
Length = 474
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 77/138 (55%), Gaps = 7/138 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
EA++ FD ++ FR ++S C+ L +L G++VH++I S++ P+V L
Sbjct: 211 EEAVLLFDRMREE-GFRPDSVALVAVLSCCAQLGALDKGQEVHEYIKLSRTSPNVFLCTG 269
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++++Y KCG +E+AR V + RNV +WNA+I G+A + A+ F++M
Sbjct: 270 LVDLYAKCGCVEEAREVFEACQDRNVF------TWNALIVGLAMHGHGTVALEYFNQMLA 323
Query: 144 RELIPDGLTVRSLLCACT 161
+ DG+T +L AC+
Sbjct: 324 DGIQSDGVTFLGVLIACS 341
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 74 SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
S PDVV N +++ Y G + AR V +EMP R D SW +IAG A E
Sbjct: 159 SAPDVVSYNALMHAYVNAGRVGVAREVFEEMPVR------DATSWGTVIAGCAKAGRLEE 212
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACT 161
A+ LF MR+ PD + + ++L C
Sbjct: 213 AVLLFDRMREEGFRPDSVALVAVLSCCA 240
>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
Length = 698
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 7/137 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EA + F +Q N +T LI CS L +LQ GR H ++ + + N +
Sbjct: 309 EAFLVFKKMQA-CNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNAL 367
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MY KCG ++ +R V + MP R D+ SWN +IAG EA +LF EM +
Sbjct: 368 IDMYAKCGRIDLSRQVFNMMPSR------DIVSWNTMIAGYGIHGLGKEATALFLEMNNL 421
Query: 145 ELIPDGLTVRSLLCACT 161
PDG+T LL AC+
Sbjct: 422 GFPPDGVTFICLLSACS 438
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
+ P++ A + C+SL L++G ++H + S D+ N +L+MY K G ++ A +
Sbjct: 223 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIAL 282
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
DEM + D S++A+++G A EA +F +M+ + PD T+ SL+ AC
Sbjct: 283 FDEMAVK------DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPAC 336
Query: 161 T 161
+
Sbjct: 337 S 337
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
R+ P+ T+ + CS+L GR +H H + + Q D+ + +L+MY KC L DA
Sbjct: 5 RVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDA 64
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS--LFSEMRDRELIPDGLTVRS 155
+ MP R DL +WNA++AG A + A++ L +M+ L P+ T+ +
Sbjct: 65 AHIFATMPAR------DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVA 118
Query: 156 LL 157
LL
Sbjct: 119 LL 120
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 20/156 (12%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+Y+ A+ +Q + R+RP ST L+ + +L G VH + + + P+
Sbjct: 89 HGMYHHAVAHLLSMQMQMH-RLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPN 147
Query: 78 ----------VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127
V+L +L+MY KCGSL AR V D MP RN + +W+A+I G
Sbjct: 148 RNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV------TWSALIGGFVL 201
Query: 128 PSNANEAMSLFSEMRDREL-IPDGLTVRSLLCACTS 162
S +A LF M + L ++ S L AC S
Sbjct: 202 CSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACAS 237
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 26/143 (18%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ + +C S ++ GR++H H+L + D+ +QN ++++Y CG +EDAR + D M
Sbjct: 110 TFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRM 169
Query: 105 PQRNVI------------------------ESP--DLASWNAIIAGVASPSNANEAMSLF 138
+R+V+ E+P ++ SWNA+I G + +E + LF
Sbjct: 170 LERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLF 229
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
+M+ + PD T+ S+L AC
Sbjct: 230 EDMQHAGVKPDNCTLVSVLSACA 252
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 77/141 (54%), Gaps = 11/141 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
++E LV F+ +Q+ ++P T ++S C+ + +L G VH +I + D +
Sbjct: 222 FSEVLVLFEDMQHAG---VKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFV 278
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+++MY KCGS+E A V + ++ D+++WN+II+G+++ + A+ +FSE
Sbjct: 279 ATALVDMYSKCGSIEKALEVFNSCLRK------DISTWNSIISGLSTHGSGQHALQIFSE 332
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M P+ +T +L AC+
Sbjct: 333 MLVEGFKPNEVTFVCVLSACS 353
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRK-----VH 66
T + Q +++E LV F+ T+ C++S CS L GR+ VH
Sbjct: 319 THGSGQHALQIFSEMLV--------EGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVH 370
Query: 67 DHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
H + QP + ++++ G+ G LE+A + +MPQ+
Sbjct: 371 VHGI----QPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKE 408
>gi|255563078|ref|XP_002522543.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538234|gb|EEF39843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 530
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 6/123 (4%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
FR ST+A +I CS L ++G++V +L + +V + +++MY KCG +EDA
Sbjct: 275 GFRPNLSTFASVIGACSVLAGFEIGQQVQGQLLKREFFTNVKTGSALIDMYSKCGRIEDA 334
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R ++MP++NV SW+++I G +EA+ LF +M+D + P+ +T L
Sbjct: 335 RRAFEQMPEKNVF------SWSSMIDGYGKNGRPDEALQLFHKMQDCCIEPNYVTFLGAL 388
Query: 158 CAC 160
AC
Sbjct: 389 SAC 391
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
G+K+H HI+ + P+ + +L +Y KCG L+ AR + DE+PQR L+++N +
Sbjct: 61 GQKIHAHIVKTGFIPNTNVSIKLLILYLKCGCLKYARQMFDELPQRT------LSAYNYL 114
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
I G ++M+L + PDG T +L A TS NV
Sbjct: 115 IGGYLKLGLVQDSMNLVRRLVLEGQRPDGFTYSMILKASTSGDNV 159
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 26/130 (20%)
Query: 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIES----- 112
S LG VH IL S+ +PD VL +++ Y K G + AR V D M ++NVI S
Sbjct: 162 SCNLGSVVHGQILKSEVEPDDVLYTALVDSYVKSGRVGYARKVFDMMMEKNVICSTSMIS 221
Query: 113 --------------------PDLASWNAIIAGVA-SPSNANEAMSLFSEMRDRELIPDGL 151
D+ +NA+I G + S A +A+ ++ EM+ P+
Sbjct: 222 GYMNRGSVEDAEEIFERTVEKDVVVFNAMIEGYSKSVQTAEKALEVYVEMQRYGFRPNLS 281
Query: 152 TVRSLLCACT 161
T S++ AC+
Sbjct: 282 TFASVIGACS 291
>gi|449433223|ref|XP_004134397.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
gi|449487596|ref|XP_004157705.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 675
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 6/118 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T+ +++ CS L +LQLGR+ H IL V + N ++NMY +CG+++ A +
Sbjct: 392 ATFTSILTICSDLETLQLGRQTHALILKEGFNGFVAVSNAMINMYARCGNMDCAFMEFSS 451
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
M R+VI SWN++I G A N +A+ +F +MR + P+ +T +L AC+
Sbjct: 452 MSDRDVI------SWNSMICGFAHHGNGEDALEMFEKMRLANIEPNHITFIGVLSACS 503
Score = 41.6 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 32 FLQNNTNFRIRPSTYACLI--STCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYG 89
FL +F +RP+ L ++CS S + H + + P++ L N ++
Sbjct: 2 FLFARPSFALRPTWIFSLYLRNSCSLTTSTCRLQASH----APPTFPNLKLLNSEISNCM 57
Query: 90 KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD 149
+ G +E A+ + D MPQRN++ +WNA+I G ++ +SLF M +R++
Sbjct: 58 RNGLVEQAQKLFDGMPQRNIV------TWNAMIRGYFLNGRCSDGISLFRRMPERDVFSY 111
Query: 150 GLTVRSLL 157
+ L+
Sbjct: 112 NTVIGGLM 119
Score = 41.2 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQP--DVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
+++ + +R L + D I + P DV N ++ +CG ++ A+ + D MP
Sbjct: 77 IVTWNAMIRGYFLNGRCSDGISLFRRMPERDVFSYNTVIGGLMQCGDVDGAKDIFDLMPF 136
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R+V+ SWN++IAG EA+ LF M + +I L + L+
Sbjct: 137 RDVV------SWNSMIAGCIRNGLLEEAIQLFDGMPLKNVISWNLIIGGLV 181
Score = 38.9 bits (89), Expect = 0.72, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DVV N ++ + G LE+A + D MP +NVI SWN II G+ + + A
Sbjct: 138 DVVSWNSMIAGCIRNGLLEEAIQLFDGMPLKNVI------SWNLIIGGLVNCGKLDSAGE 191
Query: 137 LFSEMRDRELI 147
F +M R+L+
Sbjct: 192 YFGKMSRRDLV 202
>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
Length = 751
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 74/140 (52%), Gaps = 11/140 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
EA+ AF +Q + I+P T +IS+C++L SL+ G + H L S + +
Sbjct: 361 EEAVRAFSEMQMDG---IKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVS 417
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++ +YGKCGS+EDA + DEM D SW A++ G A A E + LF +M
Sbjct: 418 NALVTLYGKCGSIEDAHRLFDEMSFH------DQVSWTALVTGYAQFGKAKETIDLFEKM 471
Query: 142 RDRELIPDGLTVRSLLCACT 161
L PDG+T +L AC+
Sbjct: 472 LVNGLKPDGVTFIGVLSACS 491
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +++ C +L + + G+++H +I + + +V + + +++MY KC S+ A V M
Sbjct: 280 TFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRM 339
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
RN+I SW A+I G + + EA+ FSEM+ + PD T+ S++ +C
Sbjct: 340 TCRNII------SWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCA 390
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 27/149 (18%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP+ T + +I S+L LG VH +L + + +++MY K G + DAR
Sbjct: 142 VRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDAR 201
Query: 99 VVSDEMPQRNVIE-------------------------SPDLASWNAIIAGVASPSNANE 133
V EM + V+ D +W ++ G+ E
Sbjct: 202 RVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLE 261
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACTS 162
A+ +F MR + D T S+L AC +
Sbjct: 262 ALDVFRRMRAEGVGIDQYTFGSILTACGA 290
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query: 46 YACLISTCSS---LRSLQLGRKVHDHILSSKSQ-PDVVLQNYILNMYGKCGSLEDARVVS 101
YA ++S+ + +++ VH IL + Q P L N++L Y K G L AR V
Sbjct: 12 YAAILSSAAGDGGRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVF 71
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
DEMP P+L + NA+++ +A + LF+ M +R+ +
Sbjct: 72 DEMPD------PNLFTRNALLSALAHSRLVPDMERLFASMPERDAV 111
>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
Length = 492
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 81/148 (54%), Gaps = 16/148 (10%)
Query: 19 IQN-LYNEALVAF----DFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK 73
+QN LY E LV F + N F I +I C+ L +L GR+VH + +
Sbjct: 176 VQNELYEEGLVLFARGKEMGLENNQFMISS-----VIRACAGLAALIEGRQVHAIVCRTG 230
Query: 74 SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
P+ + + +++MY KCGS+E+A V+ + ++NV+ WNAII+G A + ++E
Sbjct: 231 FGPNNFVASALVDMYAKCGSIEEAYVLFCNIEKKNVV------LWNAIISGFAKHACSSE 284
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACT 161
M+LF EM+ + PD +T ++L AC
Sbjct: 285 VMNLFEEMQQTGMQPDEVTYVAVLSACV 312
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 8/121 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+ C+ R G+ H ++ + D + N ++NMY KCG + A V DE+P+R+
Sbjct: 4 LLQFCAKNREPITGKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIPERS 63
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP-DGLTVRSLLCACTSPSNVL 167
++ SWN +I +A+ +F EM+ RE P TV S++CAC + +V
Sbjct: 64 MV------SWNIMIGTCVQNGEEEKAIDIFLEMQ-REGSPCSEFTVSSVVCACAAKGDVF 116
Query: 168 Y 168
+
Sbjct: 117 F 117
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + ++ C++ + R++H + + DV + ++++Y KCGS+EDA V + M
Sbjct: 101 TVSSVVCACAAKGDVFFCRQLHAFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGM 160
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P+RN + +W++I+AG E + LF+ ++ L + + S++ AC
Sbjct: 161 PERNDV------TWSSIVAGFVQNELYEEGLVLFARGKEMGLENNQFMISSVIRACAG 212
>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 734
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 74/124 (59%), Gaps = 8/124 (6%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
R+ P+ T A ++ CSSL +L G+++H I+ + +V + + + MY KCGSL+D
Sbjct: 416 RVIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCGSLDDG 475
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
++ MP R+VI SWNA+I+G++ + N+A+ LF +M + PD +T +LL
Sbjct: 476 YLIFWRMPSRDVI------SWNAMISGLSQNGHGNKALELFEKMLLEGIKPDPVTFVNLL 529
Query: 158 CACT 161
AC+
Sbjct: 530 SACS 533
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A + S S+L + G++ H + + DV + + +LNMY K G + DAR + D M
Sbjct: 120 TLAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRM 179
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P+RN + SW +I+G AS A++A+ +F MR E I + + S+L A TS
Sbjct: 180 PERNTV------SWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTS 231
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T +I+ CS L ++ G+++H + + + +++MY KCGSL DAR
Sbjct: 322 TLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADAR------ 375
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
++ PD+ W +II G + ++L+ +M+ +IP+ LT+ S+L AC+S
Sbjct: 376 KGFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSS 433
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 9/116 (7%)
Query: 49 LISTCSSLRS---LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
L S S+L S + GR+VH + + V + N ++ MY KCGSL+DA +
Sbjct: 222 LTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSG 281
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+N I +W+A++ G A ++++A+ LF++M ++P T+ ++ AC+
Sbjct: 282 DKNSI------TWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACS 331
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 53 CSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIES 112
C+ +++ GR +H IL + S + + N LN+Y K L A + D + +
Sbjct: 21 CTHNKNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDND---- 76
Query: 113 PDLASWNAIIAGVASPSNANE---AMSLFSE-MRDRELIPDGLTVRSLLCACTSPSNVL 167
D SWN++I + +++ A+SLF MR +IP+ T+ + A ++ S+V+
Sbjct: 77 KDDVSWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVV 135
>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 882
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 79/141 (56%), Gaps = 11/141 (7%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
L+ EAL + L+ + ++ P T+ +I C+ L ++G V++ IL + D+
Sbjct: 85 GLFPEALEFYGKLRES---KVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDL 141
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N +++MY + G L AR V DEMP R DL SWN++I+G +S EA+ ++
Sbjct: 142 FVGNALVDMYSRMGLLTRARQVFDEMPVR------DLVSWNSLISGYSSHGYYEEALEIY 195
Query: 139 SEMRDRELIPDGLTVRSLLCA 159
E+++ ++PD TV S+L A
Sbjct: 196 HELKNSWIVPDSFTVSSVLPA 216
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 6/137 (4%)
Query: 32 FLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91
FL+N F+ T + ++ C LR L L + +++++L + + ++N ++++Y KC
Sbjct: 296 FLENLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKC 355
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL 151
G + AR V + M E D SWN+II+G + EAM LF M E D +
Sbjct: 356 GDMITARDVFNSM------ECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHI 409
Query: 152 TVRSLLCACTSPSNVLY 168
T L+ T +++ +
Sbjct: 410 TYLMLISVSTRLADLKF 426
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T+ + C+SL + +LG+++H +L + ++ + N ++ MY KCG LE++ V +
Sbjct: 510 ATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFER 569
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
M +R+V+ +W +I +A+ F++M ++PD + +++ AC+
Sbjct: 570 MSRRDVV------TWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACS 621
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY LIS + L L+ G+ +H + + S D+ + N +++MY KCG + D+ + M
Sbjct: 410 TYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSM 469
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ D +WN +I+ + + + ++MR E++PD T L C S
Sbjct: 470 G------TGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCAS 521
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 12/143 (8%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
Y EAL + L+N+ I P ++ + ++ +L ++ G+ +H L S
Sbjct: 185 HGYYEEALEIYHELKNSW---IVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSV 241
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
VV+ N ++ MY K DAR V DEM R D S+N +I G E++ +
Sbjct: 242 VVVNNGLVAMYLKFRRPTDARRVFDEMDVR------DSVSYNTMICGYLKLEMVEESVRM 295
Query: 138 FSEMRDRELIPDGLTVRSLLCAC 160
F E D + PD LTV S+L AC
Sbjct: 296 FLENLD-QFKPDLLTVSSVLRAC 317
>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
Length = 687
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 7/137 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EA + F +Q N +T LI CS L +LQ GR H ++ + + N +
Sbjct: 309 EAFLVFKKMQA-CNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNAL 367
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MY KCG ++ +R V + MP R D+ SWN +IAG EA +LF EM +
Sbjct: 368 IDMYAKCGRIDLSRQVFNMMPSR------DIVSWNTMIAGYGIHGLGKEATALFLEMNNL 421
Query: 145 ELIPDGLTVRSLLCACT 161
PDG+T LL AC+
Sbjct: 422 GFPPDGVTFICLLSACS 438
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
+ P++ A + C+SL L++G ++H + S D+ N +L+MY K G ++ A +
Sbjct: 223 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIAL 282
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
DEM + D S++A+++G A EA +F +M+ + PD T+ SL+ AC
Sbjct: 283 FDEMAVK------DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPAC 336
Query: 161 T 161
+
Sbjct: 337 S 337
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
R+ P+ T+ + CS+L GR +H H + + Q D+ + +L+MY KC L DA
Sbjct: 5 RVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDA 64
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS--LFSEMRDRELIPDGLTVRS 155
+ MP R DL +WNA++AG A + A++ L +M+ L P+ T+ +
Sbjct: 65 AHIFATMPAR------DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVA 118
Query: 156 LL 157
LL
Sbjct: 119 LL 120
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 20/156 (12%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+Y+ A+ +Q + R+RP ST L+ + +L G VH + + + P+
Sbjct: 89 HGMYHHAVAHLLSMQMQMH-RLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPN 147
Query: 78 ----------VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127
V+L +L+MY KCGSL AR V D MP RN + +W+A+I G
Sbjct: 148 RNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV------TWSALIGGFVL 201
Query: 128 PSNANEAMSLFSEMRDREL-IPDGLTVRSLLCACTS 162
S +A LF M + L ++ S L AC S
Sbjct: 202 CSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACAS 237
>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
Length = 370
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 71/120 (59%), Gaps = 6/120 (5%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
A ++ C+S+ +L+ G++VH I+ + DV + N +++MYGKCG +EDA+ V ++ +
Sbjct: 2 AGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLE 61
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
PD+ASWNA+I+G+A EA+ LF +M + P+ +T +L C+ V
Sbjct: 62 ------PDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLV 115
>gi|302789766|ref|XP_002976651.1| hypothetical protein SELMODRAFT_105614 [Selaginella moellendorffii]
gi|300155689|gb|EFJ22320.1| hypothetical protein SELMODRAFT_105614 [Selaginella moellendorffii]
Length = 341
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 68/125 (54%), Gaps = 8/125 (6%)
Query: 40 RIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
++RP+++ + +++ C L G ++H HI+ D+V+ ++ MY +CGS++ A
Sbjct: 5 KVRPTSFFFSGILAACLEPGDLPTGMRIHSHIVDCGCGSDIVVATGLIGMYSRCGSVDRA 64
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R V D M R+ + +W A+IA A + +AM LF M ++ PDG T S++
Sbjct: 65 REVFDRMSYRDTV------AWTAMIAAYAHTGHPRQAMELFKAMDTWDVRPDGFTYASVI 118
Query: 158 CACTS 162
ACT
Sbjct: 119 NACTG 123
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 8/135 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A + + + +RP TYA +I+ C+ + +L G VH I+ D V+QN +++
Sbjct: 95 AMELFKAMDTWDVRPDGFTYASVINACTGMGALADGMVVHREIVRDGFDGDPVVQNSLVD 154
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCGSL +AR V D+M +R D+A+W A+ +G A NEA+ F M +
Sbjct: 155 MYSKCGSLGEARAVFDDMVKR------DVATWTALFSGYAKHGFNNEALETFWCMALESM 208
Query: 147 IPDGLTVRSLLCACT 161
D + ++L AC+
Sbjct: 209 ALDEIIFTTVLQACS 223
>gi|302809332|ref|XP_002986359.1| hypothetical protein SELMODRAFT_123910 [Selaginella moellendorffii]
gi|300145895|gb|EFJ12568.1| hypothetical protein SELMODRAFT_123910 [Selaginella moellendorffii]
Length = 516
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 45/162 (27%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILS-------------------------------- 71
+TYA L+ C R+L G++VH H+++
Sbjct: 25 ATYASLLRQCGRSRALWAGKQVHSHMIARGLDRDKVLGDILVQMYGKCRSLGDARDAFER 84
Query: 72 -------SKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124
S PDVV+ N ++N+Y KCG ++DAR + D M R+ LASWNA+IAG
Sbjct: 85 LAYRDIYSGMTPDVVVHNSLVNLYAKCGRIDDARSLFDGMQVRS------LASWNAMIAG 138
Query: 125 VASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
A +EA LF + L PD LT +LL AC++P V
Sbjct: 139 YAHLDLGDEAFDLFRCIDLEGLGPDMLTFINLLGACSTPEFV 180
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++C+ + CS L+ L+ GR H I++S D V+ +++MYG+CGS+E AR D+M
Sbjct: 296 TFSCVATACSLLKDLRAGRAAHSRIVASGFDTDRVVVTALMDMYGRCGSVEAARRTFDDM 355
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+R D+ SWNA++ + EA+ LF EM + +++ +L ACT
Sbjct: 356 -RRRCSTRVDVVSWNAMMGLYSHHGQPREALELFGEMGLAGEAGNEVSLTLVLHACT 411
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 35/146 (23%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV---- 100
T+ L+ CS+ + GR +H + + ++VL +L+MY KCGS+E AR V
Sbjct: 166 TFINLLGACSTPEFVDAGRNIHARVAALGLDSNLVLATALLDMYAKCGSIEGARSVFASM 225
Query: 101 -------------------------SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
D MP+R+V+ SWN +++G E++
Sbjct: 226 ADNKNQNSIINMYARCGSLDEARACFDSMPRRSVV------SWNVLMSGYVEQQQGEESL 279
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACT 161
L M + + P+ T + AC+
Sbjct: 280 KLVRCMDWQGIHPNAFTFSCVATACS 305
>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 668
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 74/131 (56%), Gaps = 9/131 (6%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
L NN + + Y L+ C+ L L+ G+ VH H+++SK + D+V++N IL MY KCG
Sbjct: 81 LINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCG 140
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS---PSNANEAMSLFSEMRDRELIPD 149
SLE AR V DEM ++V+ +W ++I G + S+A A+ LF EM L P+
Sbjct: 141 SLEIARQVFDEMCVKDVV------TWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPN 194
Query: 150 GLTVRSLLCAC 160
+ SL+ C
Sbjct: 195 EFALSSLVKCC 205
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 8/128 (6%)
Query: 41 IRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP+ +A L+ C L S G+++H Q +V + + +++MY +CG L ++R
Sbjct: 191 LRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESR 250
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+V DE+ +N + SWNA+I+G A EA+ LF +M+ T +LLC
Sbjct: 251 LVFDELESKNEV------SWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLC 304
Query: 159 ACTSPSNV 166
+ ++ ++
Sbjct: 305 SSSTTGSL 312
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 8/138 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F +Q F TY+ L+ + S+ SL+ G+ +H H++ S + + N +
Sbjct: 279 EALGLFVKMQRE-GFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTL 337
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
L+MY K G++ DA+ V D + + +V+ S N+++ G A EA+ LF EM
Sbjct: 338 LHMYAKSGNICDAKKVFDRLVKVDVV------SCNSMLIGYAQHGLGKEAVELFEEMMLW 391
Query: 145 -ELIPDGLTVRSLLCACT 161
E+ P+ +T S+L AC+
Sbjct: 392 VEIEPNDITFLSVLTACS 409
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 7/129 (5%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
L EA+ F+ + T+ +++ CS L G + + +P +
Sbjct: 375 HGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKKYGLEPKLS 434
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+++++G+ G L+ A+ +EMP IE P+ W A++ AS + N M ++
Sbjct: 435 HYTTVVDLFGRAGLLDQAKSFIEEMP----IE-PNATIWGALLG--ASKMHKNTEMGAYA 487
Query: 140 EMRDRELIP 148
+ EL P
Sbjct: 488 AQKVLELDP 496
>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 600
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 74/122 (60%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + + S C+ + +L+LG+++H +++S DV + + +++MY KCGSL+ + ++ ++
Sbjct: 303 TMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKL 362
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+N L WNA+I G+A A +A+ +F+ M +++P+G+T S+L ACT
Sbjct: 363 TDKN------LYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAG 416
Query: 165 NV 166
V
Sbjct: 417 LV 418
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 26 ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
AL + + +N T++ L+ C+ + +++LG+ VH HI + + +Q ++
Sbjct: 121 ALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALV 180
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+ Y K L +AR V DEM +R D +W A+++ +A + + A LF EM +R
Sbjct: 181 DFYSKLEILSEARKVFDEMCER------DAFAWTAMLSALARVGDMDSARKLFEEMPER 233
>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 8/140 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
E A Q + ++P+ T L+S C+ L +L +G +H +I + + + DVVL
Sbjct: 112 GEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLG 171
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N +++MY KCG+LE A V + ++N+ WN+II G+ EA++ F M
Sbjct: 172 NALIDMYCKCGALEAAIDVFHGLSRKNIF------CWNSIIVGLGMNGRGEEAIAAFIVM 225
Query: 142 RDRELIPDGLTVRSLLCACT 161
+ PDG+T +L C+
Sbjct: 226 EKEGIKPDGVTFVGILSGCS 245
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
++++ ++ +C+ QLG H I+ + D++LQ +L+ Y K G +E+AR + D
Sbjct: 31 TSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKHGYVEEARNLFDN 90
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
M +RN + +WN +I+ A+S+F +M+ + P +T+ SLL AC
Sbjct: 91 MTERN----SNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACA 144
>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
Length = 745
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 11/145 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
EA+ F +Q + I P Y +IS+C++L SL+ G + H L S + +
Sbjct: 355 EEAVRVFSEMQRDG---IDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVS 411
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++ +YGKCGS+EDA + DEM D SW A+++G A A E + LF +M
Sbjct: 412 NALVTLYGKCGSIEDAHRLFDEMSFH------DQVSWTALVSGYAQFGRAKETIDLFEKM 465
Query: 142 RDRELIPDGLTVRSLLCACTSPSNV 166
+ + PDG+T +L AC+ V
Sbjct: 466 LAKGVKPDGVTFIGVLSACSRAGFV 490
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 77/141 (54%), Gaps = 7/141 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L +EAL F ++ I T+ +++ C +L +L+ G+++H +I+ ++ +V +
Sbjct: 251 GLESEALEIFRRMRFQ-GIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFV 309
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ +++MY KC S++ A V M +N+I SW A+I G + EA+ +FSE
Sbjct: 310 GSALVDMYSKCRSIKLAETVFRRMTCKNII------SWTALIVGYGQNGCSEEAVRVFSE 363
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M+ + PD T+ S++ +C
Sbjct: 364 MQRDGIDPDDYTLGSVISSCA 384
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 25/162 (15%)
Query: 28 VAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNM 87
V LQ +++ R T + ++ S+L LG++ H IL + + + +++M
Sbjct: 125 VYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDM 184
Query: 88 YGKCGSLEDARVVSDEMPQRNVI-------------------------ESPDLASWNAII 122
Y K + DA+ DE+ +NV+ D +W ++
Sbjct: 185 YAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMV 244
Query: 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
G +EA+ +F MR + + D T S+L AC + S
Sbjct: 245 TGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALS 286
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 42 RP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPD-VVLQNYILNMYGKCGSLEDAR 98
RP S YA L+S + G +H IL + P L N++L YGK G AR
Sbjct: 3 RPLSSQYAALLSAAARTEPHVAG-ALHCVILRTLPHPPPTYLLNHLLTAYGKAGRHARAR 61
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
V D MP P+L ++NA+++ +A ++ +LF+ M R+++
Sbjct: 62 RVFDAMPH------PNLFTYNALLSTLAHARLLSDMEALFASMTQRDIV 104
>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 697
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 84/146 (57%), Gaps = 11/146 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y +AL + ++ N I P T + + S C+ + +L+LG+++H +++S DV +
Sbjct: 379 YQDALAIYSEMRLNG---IIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYI 435
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ +++MY KCGSL+ + ++ ++ +N L WNA+I G+A A +A+ +F+
Sbjct: 436 GSALVDMYAKCGSLDLSLLIFFKLTDKN------LYCWNAVIEGLAVHGYAEKALRMFAI 489
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M +++P+G+T S+L ACT V
Sbjct: 490 MEREKIMPNGVTFISILSACTHAGLV 515
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 26 ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
AL + + +N T++ L+ C+ + +++LG+ VH HI + + +Q ++
Sbjct: 218 ALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALV 277
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+ Y K L +AR V DEM +R D +W A+++ +A + + A LF EM +R
Sbjct: 278 DFYSKLEILSEARKVFDEMCER------DAFAWTAMVSALARVGDMDSARKLFEEMPER 330
>gi|255559140|ref|XP_002520592.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540252|gb|EEF41825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 525
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 78/134 (58%), Gaps = 7/134 (5%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+ +Y +AL F +Q+ + ST+AC +S+C+ + +LQ+GR++H ++ S D+
Sbjct: 393 LHGMYLDALWCFVLMQHEGK-KPDQSTFACALSSCAIVAALQVGRQLHHLVIKSGYINDL 451
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N ++ MY KCG + +A++V I + D+ SWN++I G A EA++LF
Sbjct: 452 FVCNALITMYAKCGKILEAKLVFKG------ICNADVVSWNSLIGGYALNGCGEEALTLF 505
Query: 139 SEMRDRELIPDGLT 152
EM+ ++PD +T
Sbjct: 506 EEMKLAGVVPDQVT 519
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 74 SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
SQ + V N +++ Y K G + DARV+ D+MP RN L SWN +IAG + +E
Sbjct: 2 SQRNTVTYNSMISAYAKNGRVIDARVLFDKMPCRN------LVSWNTMIAGYLHNNKVDE 55
Query: 134 AMSLFSEMRDREL 146
A LF +M R+L
Sbjct: 56 AYELFVKMPRRDL 68
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+ TC + + K + L + D N +++ Y + G +DA+ + +EMP +N
Sbjct: 73 LMITCYTQNGMLEKAKQLLNSLPCNYKKDAACWNAMISGYSREGRYDDAKRLFNEMPVKN 132
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTV 153
++ SWN+++AG + A+ LF EM +R+++ L V
Sbjct: 133 IV------SWNSMLAGYTQNGQMSLALQLFHEMLERDVVSWNLMV 171
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+P++V +L + + G L +AR + D+MP +NV+ SWNA+I+ +EA
Sbjct: 192 EPNIVSWVTMLYGFARKGKLLEARRLFDQMPSKNVV------SWNAMISAYVQSRQIDEA 245
Query: 135 MSLFSEMRDRELI 147
LF EM R+ +
Sbjct: 246 EKLFEEMPKRDSV 258
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 68 HILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127
I + PD+V N +L Y +CG +++A + ++M ++ D+ SWN ++A A
Sbjct: 309 QIFNEIGTPDMVCFNTMLAGYTQCGRVDEAIHLFEQMVKK------DIVSWNTMVAAYAQ 362
Query: 128 PSNANEAMSLFSEMRDRELI 147
A+ +F EM +R L+
Sbjct: 363 VGQMERALKVFKEMGERNLV 382
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 68 HILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127
H+ + D+V N ++ Y + G +E A V EM +RN L SWN++I+G
Sbjct: 340 HLFEQMVKKDIVSWNTMVAAYAQVGQMERALKVFKEMGERN------LVSWNSLISGFML 393
Query: 128 PSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+A+ F M+ PD T L +C
Sbjct: 394 HGMYLDALWCFVLMQHEGKKPDQSTFACALSSC 426
Score = 37.0 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 25/96 (26%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV-------------------------IE 111
D V ++N Y + G L++AR ++P +N+ I
Sbjct: 256 DSVSWTTMINGYVRAGKLDEARKTLSKLPYKNIAAQTAMISGYIKYNKIDEARQIFNEIG 315
Query: 112 SPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
+PD+ +N ++AG +EA+ LF +M ++++
Sbjct: 316 TPDMVCFNTMLAGYTQCGRVDEAIHLFEQMVKKDIV 351
>gi|15217470|ref|NP_177298.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169716|sp|Q9C9H9.1|PP114_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g71420
gi|12323734|gb|AAG51830.1|AC016163_19 hypothetical protein; 56014-58251 [Arabidopsis thaliana]
gi|332197078|gb|AEE35199.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 745
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 9/118 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLEDARVVSD 102
YA L C+ R+L G +H H+LS +V+L N+++NMY KCG++ AR V D
Sbjct: 61 AYAALFQACAEQRNLLDGINLHHHMLSHPYCYSQNVILANFLINMYAKCGNILYARQVFD 120
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
MP+RNV+ SW A+I G N E LFS M P+ T+ S+L +C
Sbjct: 121 TMPERNVV------SWTALITGYVQAGNEQEGFCLFSSMLS-HCFPNEFTLSSVLTSC 171
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 9/122 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ ++ C+ L + + +H ++ D VL N +++ Y KCGSL+ V D+M
Sbjct: 371 TFSSVLKACAGLVTARHALSIHAQVIKGGFLADTVLNNSLIHAYAKCGSLDLCMRVFDDM 430
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
R+V+ SWN+++ + + + +F +M ++ PD T +LL AC+
Sbjct: 431 DSRDVV------SWNSMLKAYSLHGQVDSILPVFQKM---DINPDSATFIALLSACSHAG 481
Query: 165 NV 166
V
Sbjct: 482 RV 483
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
G++VH L + + N +++MYG+C D + I+ +L +WN++
Sbjct: 176 GKQVHGLALKLGLHCSIYVANAVISMYGRC---HDGAAAYEAWTVFEAIKFKNLVTWNSM 232
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
IA + +A+ +F M + G +LL C+S
Sbjct: 233 IAAFQCCNLGKKAIGVFMRMHSDGV---GFDRATLLNICSS 270
>gi|302802776|ref|XP_002983142.1| hypothetical protein SELMODRAFT_117546 [Selaginella moellendorffii]
gi|300149295|gb|EFJ15951.1| hypothetical protein SELMODRAFT_117546 [Selaginella moellendorffii]
Length = 544
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 6/117 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+TYA ++ C+ ++LQ G+K+H +I S + D +L N+++ MY KCGSL DA+ + DE
Sbjct: 8 ATYARVLRVCAKNKALQQGKKIHSYIRDSGQEQDRILGNHLIEMYLKCGSLRDAQRMFDE 67
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
M R+ I W ++I+ + + A+ LF M+ + PD +T ++L C
Sbjct: 68 MVSRDAI------LWTSMISAYSERGHYKTALKLFQRMQGESVKPDNVTFVTVLNCC 118
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 14/144 (9%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y AL F +Q + ++P T+ +++ C + +LQ G+ +H + + + D+++
Sbjct: 89 YKTALKLFQRMQGES---VKPDNVTFVTVLNCCGKMSALQEGKLIHSQLTGNGFENDLIV 145
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ +LNMYGKCGSL DAR V +E I+ D+ +WNA+++ S EA+ L+ +
Sbjct: 146 KTALLNMYGKCGSLTDARKVFEE------IQGKDIITWNAMLSVYVQHSAYEEALELYRK 199
Query: 141 MRDRELIPDGLTVRSLLCACTSPS 164
M EL P T +++ AC +
Sbjct: 200 M---ELTPSVSTFVTVINACAGAT 220
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
ST+ +I+ C+ +L+ GR+VH + + + + + + +LNMYGKCGSLEDA V
Sbjct: 207 STFVTVINACAGATALEDGRQVHAVVTARGLETEDAVSSALLNMYGKCGSLEDAAKV--- 263
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+R E D+A W +I+ + EA+ LF MR + D + L AC
Sbjct: 264 FWKRR--EYDDVA-WAHMISFYTQWHRSKEALGLFRLMRLEGVRVDKFAFTTTLSAC 317
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ C+ L+ L+ G+ VH+ I D ++ +L MY KCG+LEDA+ + D
Sbjct: 407 TIISVLKACAELQELERGKAVHESIKGKDLYQDGGIREALLGMYCKCGALEDAQNLFDRT 466
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P ++ A WNA++ A LF +M+ ++ + +TV AC S
Sbjct: 467 PDKST------AFWNALLDAYVKQGQLERASELFEQMQANDVEANEITV-----ACVS 513
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
R+ + +S C+ L GR +H I S + DVV+++ +++MYG+CG + A
Sbjct: 304 RVDKFAFTTTLSACNGAECLAEGRLLHAGIEESGFESDVVVRSALIHMYGRCGLYDAAWE 363
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ +P +NV+ S +A+IA + E + ++ ++ +P LT+ S+L A
Sbjct: 364 LFQSVPTKNVLLS------SAMIATCERHGHWRELLDVYQNVQS---VPYKLTIISVLKA 414
Query: 160 C 160
C
Sbjct: 415 C 415
>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
Length = 768
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AF F + + PS +YA ++S C+ L SL GR+VH I D + + +++
Sbjct: 475 AFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALID 534
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG ++ AR V D M +N + +WN +I G A +EA+ L+ +M
Sbjct: 535 MYSKCGDVDAARWVFDMMLGKNTV------TWNEMIHGYAQNGCGDEAVLLYEDMIGSGE 588
Query: 147 IPDGLTVRSLLCACT 161
PDG+T ++L AC+
Sbjct: 589 KPDGITFVAVLTACS 603
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Query: 43 PSTY-ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
+TY A L+ TC ++ G+ +H H+L S+ D L N ++ Y KC +++ +R +
Sbjct: 4 KTTYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLF 63
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
D+MP+R D+ +WNAI+ S +A LF+EM +R ++
Sbjct: 64 DQMPKR------DIYTWNAILGAYCKASELEDAHVLFAEMPERNIV 103
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 78/147 (53%), Gaps = 13/147 (8%)
Query: 23 YNEALVAFDFLQNNTNFR-IRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
+ EA+ F +Q FR + P +T A ++S+ + + L+ GR+VH + + D+
Sbjct: 371 HKEAVKLFREMQ----FRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIY 426
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
L + ++ MY KCG +E A+ + D I D+ WN+++AG++ S EA + F
Sbjct: 427 LASGLIGMYSKCGKVEMAKRIFDR------IAELDIVCWNSMMAGLSLNSLDKEAFTFFK 480
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNV 166
+MR++ + P + ++L C S++
Sbjct: 481 KMREKGMFPSQFSYATVLSCCAKLSSL 507
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
G++VH + + D+ L N +L+MY K G+++ A ++ MP+ +V+ SWN +
Sbjct: 242 GQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVV------SWNVM 295
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
IAG S +++A+ M+ PD +T ++L AC ++
Sbjct: 296 IAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDI 340
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 51 STCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI 110
C +L ++ GR+ H + ++ + N +L MY KC + DA ++P+
Sbjct: 116 GACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPE---- 171
Query: 111 ESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P+ S+ A++ G+A NEA LF M + D +++ S+L C+
Sbjct: 172 --PNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCS 220
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+PD + +L K G +E R + D M SP L+SWN I++G + N EA
Sbjct: 321 EPDEITYVNMLVACIKSGDIEAGRQMFDGMS------SPSLSSWNTILSGYSQNENHKEA 374
Query: 135 MSLFSEMRDRELIPDGLTVRSLL 157
+ LF EM+ R + PD T+ +L
Sbjct: 375 VKLFREMQFRSVHPDRTTLAIIL 397
>gi|449519292|ref|XP_004166669.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g15690-like [Cucumis sativus]
Length = 588
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+ L C +S + VHD+ L S + D+ L N +L MYG+CGS+ DAR V D MP
Sbjct: 246 FHLLFELCGKSKSFDNAKVVHDYFLQSSCRSDLQLNNEVLEMYGRCGSMSDARRVFDHMP 305
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165
R++ SW+ ++ G A +E + LF M++ L P+ T ++ AC S +
Sbjct: 306 DRSI------DSWHLMMKGYADNGLGDEGLELFENMKNLGLQPNSQTFLYVMSACASANA 359
Query: 166 V 166
V
Sbjct: 360 V 360
>gi|347954482|gb|AEP33741.1| chlororespiratory reduction 21, partial [Thlaspi arvense]
Length = 732
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 13/149 (8%)
Query: 21 NLYNEALVAF-DFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPD 77
L AL+ F + L+N I P + + C +L+ + GR VH +++ +
Sbjct: 132 GLVEGALMGFVEMLENG----IFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGFHDC 187
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + + + +MYGKCG L++AR V DE+P+RNV+ +WNA++ G EA+ L
Sbjct: 188 VFVASSLADMYGKCGVLDEARKVFDEIPERNVV------AWNALMVGYVQNGMNEEAIRL 241
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNV 166
FS+MR + P +TV + L A + +
Sbjct: 242 FSDMRKEGVEPTRVTVSTCLSASANMGGI 270
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 11/142 (7%)
Query: 29 AFDFLQNNTNFRIRPSTYACLI--STCSSLRSLQLGRKVHDHILSSKSQ-PDVVLQNYIL 85
A FL+ +RP+ ++ + S C++L SL GR +H +I+ ++ V ++ ++
Sbjct: 510 AILFLRKMQESGLRPNVFSITVALSACANLASLHYGRSIHGYIIRNQRHCSSVSIETSLV 569
Query: 86 NMYGKCGSLEDA-RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+MY KCG + A RV ++ +L +NA+I+G A N EA+ L+ + D
Sbjct: 570 DMYAKCGDINKAERVFRSKL-------YSELPLYNAMISGFAVYGNVKEAIGLYRSLEDM 622
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
+ PD +T SLL AC ++
Sbjct: 623 GIKPDSITFTSLLSACNHAGDI 644
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
N + T + L+S + + +LG++V + + + D+VL + ++MY KCGS+ DA
Sbjct: 350 NLKFDCVTLSTLMSAAARTQDSKLGKEVQSYCIRHSLESDIVLASTAVDMYAKCGSIVDA 409
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
+ V D Q+ DL WN ++ A + EA+ LF EM+ + P+ +T
Sbjct: 410 KKVFDSTVQK------DLILWNTLLGAYAESGLSGEALRLFYEMQLESVPPNVIT 458
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLE 95
RI P Y ++ C R+L G+++H IL + ++ ++ Y KC +LE
Sbjct: 45 KIRIGPEIYGEILQGCVYKRNLCTGKQIHARILKKGDFYARNEYIETKLVIFYAKCDALE 104
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
A ++ ++ RNV SW AII A+ F EM + + PD V +
Sbjct: 105 IAELLFSKLRVRNVF------SWAAIIGVKCRIGLVEGALMGFVEMLENGIFPDNFVVPN 158
Query: 156 LLCACTS 162
+ AC +
Sbjct: 159 VCKACGA 165
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 8/142 (5%)
Query: 19 IQNLYNE-ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+QN NE A+ F ++ R + CL S +++ ++ G++ H + + + D
Sbjct: 230 VQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCL-SASANMGGIEEGKQSHAIAVVNGLELD 288
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+L ILN Y K G +E A ++ D M +++V+ +WN +I+G +A+ +
Sbjct: 289 NILGTSILNFYCKVGLIECAEMIFDRMVEKDVV------TWNLLISGYVQQGLVEDAIRM 342
Query: 138 FSEMRDRELIPDGLTVRSLLCA 159
MR L D +T+ +L+ A
Sbjct: 343 CQSMRLENLKFDCVTLSTLMSA 364
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
P+V+ N I+ + G + +A+ + +M +I P+L SW ++ G+ + EA+
Sbjct: 454 PNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGII--PNLVSWTTMMNGLVQNGCSEEAI 511
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
+M++ L P+ ++ L AC + +++ Y
Sbjct: 512 LFLRKMQESGLRPNVFSITVALSACANLASLHY 544
>gi|224118458|ref|XP_002331487.1| predicted protein [Populus trichocarpa]
gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa]
Length = 606
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 7/129 (5%)
Query: 39 FRIRPSTYACLISTCSSLRSLQLGRKVH-DHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
F +T AC++ C L L +G+ +H +++ ++ V+L N +++MY KCG + +A
Sbjct: 317 FAPMENTLACVLPVCGQLGCLDVGQWIHRNYVRMRYNEISVILANALIDMYAKCGVIHEA 376
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
V ++MP+RN L SWN++I AS +A +A+S+F M PD +T+ +L
Sbjct: 377 AKVFNDMPERN------LVSWNSMITAYASHGHAKQALSVFERMISGGFKPDDITLVGVL 430
Query: 158 CACTSPSNV 166
AC+ V
Sbjct: 431 SACSHGGLV 439
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 67/136 (49%), Gaps = 9/136 (6%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
+Q R +A + C + G+ VH + +++QN +++ YG G
Sbjct: 142 VQKGVEMDCRSFVFA--LKACEQFLGVLEGKSVHCVVWKMGFVYTLLVQNGLVHFYGLRG 199
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGL 151
L AR+V DE+ +R+V+ SW ++I G + +EA+ LF M ++ P+ +
Sbjct: 200 CLGLARLVFDEISERDVV------SWTSMIDGYSKHKWCDEALKLFDSMLMYGVVEPNEV 253
Query: 152 TVRSLLCACTSPSNVL 167
T+ ++L +C+ +++
Sbjct: 254 TMIAVLSSCSQKGDLI 269
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 33/157 (21%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+EAL FD + T ++S+CS L LG+ +++ + + L N
Sbjct: 233 DEALKLFDSMLMYGVVEPNEVTMIAVLSSCSQKGDLILGKTFLEYVKTRNVTRSLNLMNA 292
Query: 84 ILNMYGKCGSLEDARVVSDEM-----PQRNVIESP----------DLASW---------- 118
IL+MY KCG L+ AR + D M P N + D+ W
Sbjct: 293 ILDMYVKCGCLDSAREIFDTMGAAFAPMENTLACVLPVCGQLGCLDVGQWIHRNYVRMRY 352
Query: 119 --------NAIIAGVASPSNANEAMSLFSEMRDRELI 147
NA+I A +EA +F++M +R L+
Sbjct: 353 NEISVILANALIDMYAKCGVIHEAAKVFNDMPERNLV 389
>gi|110741296|dbj|BAF02198.1| hypothetical protein [Arabidopsis thaliana]
Length = 727
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 9/118 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLEDARVVSD 102
YA L C+ R+L G +H H+LS +V+L N+++NMY KCG++ AR V D
Sbjct: 61 AYAALFQACAEQRNLLDGINLHHHMLSHPYCYSQNVILANFLINMYAKCGNILYARQVFD 120
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
MP+RNV+ SW A+I G N E LFS M P+ T+ S+L +C
Sbjct: 121 TMPERNVV------SWTALITGYVQAGNEQEGFCLFSSMLS-HCFPNEFTLSSVLTSC 171
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 9/122 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ ++ C+ L + + +H ++ D VL N +++ Y KCGSL+ V D+M
Sbjct: 371 TFSSVLKACAGLVTARHALSIHAQVIKGGFLADTVLNNSLIHAYAKCGSLDLCMRVFDDM 430
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
R+V+ SWN+++ + + + +F +M ++ PD T +LL AC+
Sbjct: 431 DSRDVV------SWNSMLKAYSLHGQVDSILPVFQKM---DINPDSATFIALLSACSHAG 481
Query: 165 NV 166
V
Sbjct: 482 RV 483
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
G++VH L + + N +++MYG+C D + I+ +L +WN++
Sbjct: 176 GKQVHGLALKLGLHCSIYVANAVISMYGRC---HDGAAAYEAWTVFEAIKFKNLVTWNSM 232
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
IA + +A+ +F M + G +LL C+S
Sbjct: 233 IAAFQCCNLGKKAIGVFMRMHSDGV---GFDRATLLNICSS 270
>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
[Vitis vinifera]
Length = 807
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 78/145 (53%), Gaps = 11/145 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+EAL AF +Q IRP+T AC++S C+ L + L ++VH +++ V++
Sbjct: 501 DEALKAFRDMQLE---EIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVS 557
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++ Y KCG + + ++MP+RN + SWN+II G+ S +E + LF +M
Sbjct: 558 NSLIATYAKCGDINSSLYTFEKMPERNDV------SWNSIILGMGMHSRTDEMIVLFDKM 611
Query: 142 RDRELIPDGLTVRSLLCACTSPSNV 166
+ PD +T ++L AC+ V
Sbjct: 612 VASGIKPDHVTFTAILSACSHAGRV 636
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 73/132 (55%), Gaps = 3/132 (2%)
Query: 39 FRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
F I P+ AC+ I +CSSL+SL GR++H ++ S + L + ++ MY KCGS+++
Sbjct: 205 FGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKN 264
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
A + + + ++ + + WN +I+G S ++A+ LF +M + PD T+ SL
Sbjct: 265 AENIFNSILDKDSVRR-NAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSL 323
Query: 157 LCACTSPSNVLY 168
C+ ++ +
Sbjct: 324 FSLCSESLDIAF 335
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 11/125 (8%)
Query: 39 FRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
FR P CLI L + GR++H H+L DV + N +L MY KCG +EDA
Sbjct: 109 FRYFP----CLIKAFGGLCDVYKGRQIHGHVLKLGVLDDVSVVNSLLTMYWKCGVVEDAV 164
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSLL 157
+ ++MP+ DL SWN +I+G + ++ F M + + P+ + S +
Sbjct: 165 QMFEKMPE------VDLVSWNTMISGFQKSMDYTRSLMFFRSMVWEFGIYPNRVACVSSI 218
Query: 158 CACTS 162
+C+S
Sbjct: 219 LSCSS 223
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ CSSL G ++H DV + + ++++Y KC + ++ V + Q+
Sbjct: 424 VLRACSSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQK- 482
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
DL SWNA+I+G A A+EA+ F +M+ E+ P+ +T+ +L C S
Sbjct: 483 -----DLVSWNALISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLS 533
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 39 FRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
+ I+P ST L S CS + G+++H I + ++ ++ +L+MY KCG +
Sbjct: 311 WGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGT 370
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
+ N+I W+A+I+ A +A+ LF E + + + D + ++
Sbjct: 371 GLKIFRRSQNHNLI------MWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAV 424
Query: 157 LCACTS 162
L AC+S
Sbjct: 425 LRACSS 430
>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 754
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 79/140 (56%), Gaps = 11/140 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
EA+ F +Q + I+P+ T +IS+C++L SL+ G + H L S +P + +
Sbjct: 364 EEAVRVFSEMQTDG---IKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVS 420
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+ ++ +YGKCGS+EDA + DEMP D S+ A+++G A A E + LF +M
Sbjct: 421 SALVTLYGKCGSIEDAHRLFDEMPFH------DQVSYTALVSGYAQFGKAKETIDLFEKM 474
Query: 142 RDRELIPDGLTVRSLLCACT 161
+ + P+G+T +L AC+
Sbjct: 475 LLKGVKPNGVTFIGVLSACS 494
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 72/141 (51%), Gaps = 7/141 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L +EAL F ++ I T+ +++ C +L + + G+++H + + + ++ +
Sbjct: 260 GLQSEALDVFRRMRAE-GVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFV 318
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ +++MY KC S+ A V M +N+I SW A+I G EA+ +FSE
Sbjct: 319 GSALVDMYSKCRSIRLAEAVFRRMTCKNII------SWTAMIVGYGQNGCGEEAVRVFSE 372
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M+ + P+ T+ S++ +C
Sbjct: 373 MQTDGIKPNDFTLGSVISSCA 393
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
R+RPS T + ++ S+L LGR+VH I+ + +++MY K G + DA
Sbjct: 144 RVRPSRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDA 203
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
+ V DEM +NV+ +N +I G+ EA +F M DR+ I
Sbjct: 204 KRVFDEMVVKNVV------MYNTMITGLLRCKMVEEARGVFEAMVDRDSI 247
>gi|255580465|ref|XP_002531058.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529353|gb|EEF31319.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 341
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 14/147 (9%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS 74
N +P LY+ + F+ ++ +T+ TY L+ S + ++++G K+H + +
Sbjct: 120 NPKPAIELYHR--LHFNSIEPDTH------TYPFLLKAVSKMVNVRVGEKIHSISIRNGF 171
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+ V +QN +++MY CG E A + + MP R DL +WN I+G A NEA
Sbjct: 172 ESLVFVQNSLMHMYAACGQYESAHKLFEFMPDR------DLVAWNTAISGFALNGKPNEA 225
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCACT 161
+ L+ EM + PDG T+ SLL AC
Sbjct: 226 LKLYMEMGLEGVEPDGFTLVSLLSACA 252
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T L+S C+ L +L LGR++H +++ ++ N ++++Y KCG + DA+ V DEM
Sbjct: 243 TLVSLLSACAELGALALGRRIHAYMVKVGLDENLHANNSLIDLYAKCGRIRDAQQVFDEM 302
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP 148
RNV+ SW ++I G+A EA+ F EM + L+P
Sbjct: 303 ELRNVV------SWTSLIVGLAVNGFGMEAIEHFKEMEKQGLVP 340
Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+I++P++ +WN +I G A N A+ L+ + + PD T LL A + NV
Sbjct: 99 LIQNPNIFTWNTMIRGHAESENPKPAIELYHRLHFNSIEPDTHTYPFLLKAVSKMVNV 156
>gi|302764952|ref|XP_002965897.1| hypothetical protein SELMODRAFT_85072 [Selaginella moellendorffii]
gi|300166711|gb|EFJ33317.1| hypothetical protein SELMODRAFT_85072 [Selaginella moellendorffii]
Length = 318
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
+TYA ++ C+ ++LQ G+K+H +I S + D +L N+++ MY KCGSL DA+ + D
Sbjct: 7 SATYARVLRVCAKNKALQQGKKIHSYIRDSGQEQDRILGNHLIEMYLKCGSLRDAQRMFD 66
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
EM R+ I W ++I+ + + A+ LF M+ + PD +T ++L C
Sbjct: 67 EMVSRDAI------LWTSMISAYSERGHYKMALKLFQRMQGESVKPDNVTFVTVLNCCGK 120
Query: 163 PS 164
S
Sbjct: 121 MS 122
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 14/144 (9%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y AL F +Q + ++P T+ +++ C + +LQ G+ +H + + + D+++
Sbjct: 89 YKMALKLFQRMQGES---VKPDNVTFVTVLNCCGKMSALQEGKLIHSQLTGNGFENDLIV 145
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ +LNMYGKCGSL DAR V +E I+ D+ +WNA+++ S EA+ L+ +
Sbjct: 146 KTALLNMYGKCGSLTDARKVFEE------IQGKDIITWNAMLSVYVQHSAYEEALELYRK 199
Query: 141 MRDRELIPDGLTVRSLLCACTSPS 164
M EL P T +++ AC +
Sbjct: 200 M---ELTPSVSTFVTVINACAGAT 220
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
ST+ +I+ C+ +L+ GR+VH + + + + + + +LNMYGKCGSLEDA V
Sbjct: 207 STFVTVINACAGATALEDGRQVHAVVTARGLETEDAVSSALLNMYGKCGSLEDAAKV--- 263
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+R E D+A W +I+ + EA+ LF MR + D + L AC
Sbjct: 264 FWKRR--EYDDVA-WAHMISFYTQWHRSKEALGLFRLMRLEGVRVDKFAFTTTLSAC 317
>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 882
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 8/133 (6%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A +F ++ P T+ +I C+ L ++G V+ IL + D+ + N +++
Sbjct: 90 ALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQILEMGFESDLYVGNALVD 149
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY + G L AR V DEMP R DL SWN++I+G +S EA+ ++ E+R+ +
Sbjct: 150 MYSRMGLLSRARQVFDEMPVR------DLVSWNSLISGYSSHGYYEEALEIYHELRNSWI 203
Query: 147 IPDGLTVRSLLCA 159
+PD TV S+L A
Sbjct: 204 VPDSFTVSSVLPA 216
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 6/137 (4%)
Query: 32 FLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91
FL+N F+ T ++ C LR L L + +++++L + + ++N ++++Y KC
Sbjct: 296 FLENLDQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKC 355
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL 151
G + AR V + M E D SWN+II+G + EAM LF M E D +
Sbjct: 356 GDMITARDVFNSM------ECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHI 409
Query: 152 TVRSLLCACTSPSNVLY 168
T L+ T +++ +
Sbjct: 410 TYLMLISLSTRLADLKF 426
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T+ + C+SL + +LG+++H +L + ++ + N ++ MY KCG LE + V +
Sbjct: 510 ATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFER 569
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
M +R+V+ +W +I +A+ F +M ++PD + +L+ AC+
Sbjct: 570 MSRRDVV------TWTGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACS 621
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY LIS + L L+ G+ +H + + S D+ + N +++MY KCG V D +
Sbjct: 410 TYLMLISLSTRLADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGE------VGDSL 463
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
N + + D +WN +I+ + + + ++MR +++PD T L C S
Sbjct: 464 KIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCAS 521
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 12/143 (8%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
Y EAL + L+N+ I P ++ + ++ ++L ++ G+ +H L S
Sbjct: 185 HGYYEEALEIYHELRNSW---IVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSV 241
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V+ N +L MY K DAR V DEM R D ++N +I G E++ +
Sbjct: 242 SVVNNGLLAMYLKFSRPTDARRVFDEMVVR------DSVTYNTMICGYLKLEMVEESVKM 295
Query: 138 FSEMRDRELIPDGLTVRSLLCAC 160
F E D + PD LTV S+LCAC
Sbjct: 296 FLENLD-QFKPDILTVTSVLCAC 317
>gi|218184996|gb|EEC67423.1| hypothetical protein OsI_34621 [Oryza sativa Indica Group]
Length = 799
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 80/143 (55%), Gaps = 8/143 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+L E+ A F + ++P T+A ++ TC++L +++LG+++H I+ + D
Sbjct: 465 SLNKESEAAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDE 524
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ + +++MY KCG + D+ +V +++ +R D SWNA+I G A EA+ +F
Sbjct: 525 YISSTLVDMYAKCGDMPDSLLVFEKVEKR------DFVSWNAMICGYALHGLGVEALRMF 578
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
M+ ++P+ T ++L AC+
Sbjct: 579 ERMQKENVVPNHATFVAVLRACS 601
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T+A L+ +CS+L L LG +VH + + + DV + +++MYGKC SL+DA
Sbjct: 150 TTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYG 209
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
MP+RN + SW + IAG + LF EM+
Sbjct: 210 MPERNWV------SWGSAIAGCVQNEQYVRGLELFIEMQ 242
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D + + +++MY KCG +++A+ + D + + V+ SWNAI++G + + A
Sbjct: 422 DAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVV------SWNAILSGFSLNKESEAAQK 475
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
FSEM D L PD T ++L C + + +
Sbjct: 476 FFSEMLDMGLKPDHFTFATVLDTCANLATI 505
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+ + + D V N +L Y G + A + D MP PD+ SWNA+++G
Sbjct: 74 VFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMP------DPDVVSWNALVSGYCQR 127
Query: 129 SNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
E++ LF EM R + PD T LL +C++
Sbjct: 128 GMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSA 161
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
+YA +C+++ L GR++H H + +K D V+ I+++Y K SL DAR +
Sbjct: 252 SYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGL 311
Query: 105 PQRNVIESPDLASWNAIIAGV 125
P V S NA++ G+
Sbjct: 312 PNHTVETS------NAMMVGL 326
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 22/138 (15%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
N +V ++++ F + + + + S C+ + G++VH L+ KS
Sbjct: 320 NAMMVGLFMIRSSIRFDV--VSLSGVFSACAETKGYFPGQQVH--CLAIKS--------- 366
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-R 142
+L++YGKC +L +A ++ M Q+ D SWNAIIA + + ++ + F+EM R
Sbjct: 367 VLDLYGKCKALMEAYLIFQGMKQK------DSVSWNAIIAALEQNGHYDDTILHFNEMLR 420
Query: 143 DRELIPDGLTVRSLLCAC 160
+ TV + C C
Sbjct: 421 FDAFVAS--TVVDMYCKC 436
>gi|449448934|ref|XP_004142220.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37320-like [Cucumis sativus]
gi|449502632|ref|XP_004161699.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37320-like [Cucumis sativus]
Length = 524
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 6/124 (4%)
Query: 39 FRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
F+ + + ++S C+S R+L+ G + H + + +V + + ++++YGKCG L +A
Sbjct: 126 FKFNANDISSVLSLCNSQRNLRGGIQYHSVAIRTGFIANVYVGSSLVSLYGKCGELSNAY 185
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V DEMP RNV+ SW AIIAG A N + LF EM+ L P+ T ++L
Sbjct: 186 RVFDEMPVRNVV------SWTAIIAGFAVEWQVNMCLELFQEMKRMALQPNEFTFVTILT 239
Query: 159 ACTS 162
ACT
Sbjct: 240 ACTG 243
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 9/136 (6%)
Query: 28 VAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
+ + Q ++P+ T+ +++ C+ +L +GR +H + + + N ++
Sbjct: 214 MCLELFQEMKRMALQPNEFTFVTILTACTGSGALGVGRSLHCQTVKMGFHSYLHVANALI 273
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+MY KCG+L A + + M E D SWN++IAG A + A+ LF MR ++
Sbjct: 274 SMYCKCGALNFALYIFEAM------EVKDTVSWNSMIAGYAQHGLSLRAIDLFKAMRKQK 327
Query: 146 LI-PDGLTVRSLLCAC 160
+ D +T +L +C
Sbjct: 328 QVEADAITFLGVLSSC 343
>gi|356537365|ref|XP_003537198.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49740-like [Glycine max]
Length = 722
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 21/174 (12%)
Query: 3 RNLKTQLRFTFYNSQPIQNLYNEALVAFDFLQNN------------TNFRIRPSTYAC-- 48
R+ K + F ++ P ++L + + FL N + +++P+ Y+
Sbjct: 422 RHGKIKRAFQIFSGVPYKSLISWNSIISGFLMNGHPLQGLEQFSALLSTQVKPNAYSLSL 481
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++S CSS+ ++ G++VH +IL +V L N ++ MY KCGSL+ A V D M +R+
Sbjct: 482 VLSICSSMSAMSHGKQVHGYILRHGFSSEVSLGNALVTMYAKCGSLDKALRVFDAMVERD 541
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCACT 161
I +WNAII+ A EA+ F M+ I PD T S+L AC+
Sbjct: 542 TI------TWNAIISAYAQHGRGEEAVCCFEAMQTSPGIKPDQATFTSVLSACS 589
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 4/128 (3%)
Query: 35 NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSL 94
N + T+A ++S CS L GR VH ++ S + N ++ MY KCG +
Sbjct: 170 NKMGVKADKYTFATMLSLCS-LELFDYGRHVHSVVIKSGFLGWTSVVNSLITMYFKCGCV 228
Query: 95 EDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVR 154
DA V +E + S D S+NA+I G AS + +A +F +M+ P +T
Sbjct: 229 VDACEVFEEAEEGG---SRDYVSYNAMIDGFASVERSEDAFLIFRDMQKGCFDPTEVTFV 285
Query: 155 SLLCACTS 162
S++ +C+S
Sbjct: 286 SVMSSCSS 293
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++S+CSSLR+ G + + V + N ++ MY G + + + + + M
Sbjct: 283 TFVSVMSSCSSLRA---GCQAQSQAIKMGFVGCVAVNNAMMTMYSGFGEVIEVQNIFEGM 339
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+R D+ SWN +++ + EAM + +MR + PD T SLL A S
Sbjct: 340 EER------DVVSWNIMVSMFLQENLEEEAMLSYLKMRREGIEPDEFTYGSLLAATDS 391
Score = 42.0 bits (97), Expect = 0.087, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 59 LQLGRKVHDHILSSKSQ------PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIES 112
L L K H + S K PD +L+ K S+E A V D +P+ ++
Sbjct: 87 LSLYAKAHRDLASVKLTFQEIDCPDAYSWTTLLSACAKLDSVEHALKVFDGIPKGHI--- 143
Query: 113 PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
A WNA+I G A N + A LF +M + D T ++L C+
Sbjct: 144 ---AVWNAVITGCAEKGNRDFAFGLFRDMNKMGVKADKYTFATMLSLCS 189
Score = 40.4 bits (93), Expect = 0.28, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 73/147 (49%), Gaps = 15/147 (10%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+NL EA++++ ++ I P TY L++ SL+ +++ +H +L
Sbjct: 357 ENLEEEAMLSYLKMRREG---IEPDEFTYGSLLAATDSLQVVEM---IHS-LLCKSGLVK 409
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ + N +++ Y + G ++ A + +P +++I SWN+II+G + + +
Sbjct: 410 IEVLNALVSAYCRHGKIKRAFQIFSGVPYKSLI------SWNSIISGFLMNGHPLQGLEQ 463
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPS 164
FS + ++ P+ ++ +L C+S S
Sbjct: 464 FSALLSTQVKPNAYSLSLVLSICSSMS 490
>gi|255559020|ref|XP_002520533.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540375|gb|EEF41946.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 547
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 87/149 (58%), Gaps = 11/149 (7%)
Query: 16 SQPIQNLYNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSK 73
S+ +QN +NEA AF + P +T + L+ C+SL +++ GR++H + +
Sbjct: 274 SRFVQNSHNEA--AFAAFKQMLQHGAYPNSATISSLLPACASLANVRHGRELHGYAFAIG 331
Query: 74 SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
+ D+ +++ I++MY KCG + +AR++ +MP+R+ + +WN++I G A+ +E
Sbjct: 332 VEEDIYVRSAIVDMYSKCGLISEARMLFSKMPERHTV------TWNSMIFGYANHGYCDE 385
Query: 134 AMSLFSEMRDRELIP-DGLTVRSLLCACT 161
A+ LF++M E D L+ ++L AC+
Sbjct: 386 AIELFNQMEKTEAKKIDHLSFTAVLTACS 414
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 11/148 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPD 77
Y + L F +QN R+RP+ + ++ C + LQ G+ +H IL + D
Sbjct: 108 HGFYQDVLDVFSEMQNE---RLRPNKFVIPSVLRACGHVFDLQTGKILHSVILRHLFESD 164
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
VV+ +++MY +C +E AR V D M ++ DL + NA++ G A A E L
Sbjct: 165 VVVNTALIDMYSRCRHVEKARKVFDGMQEK------DLVALNAMVLGYAQNGFAKEGFLL 218
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSN 165
+M+ ++ P+ +T +L+ +
Sbjct: 219 VEQMQMLDIKPNLVTWNTLISGFAQAGD 246
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+P++V N +++ + + G + + M PD+ SW ++I+ S+ A
Sbjct: 228 KPNLVTWNTLISGFAQAGDKVMVQELFGLMSMHGF--EPDVISWTSVISRFVQNSHNEAA 285
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+ F +M P+ T+ SLL AC S +NV
Sbjct: 286 FAAFKQMLQHGAYPNSATISSLLPACASLANV 317
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ LI T + +L G+ +H ++ S + +++ Y + L R + D +
Sbjct: 31 TFDELIKTYTRDHALNQGKHLHARLIVSGLASSNNFASKLISFYTETRQLSIVRKLFDRI 90
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P+ P+ +I + + + +FSEM++ L P+ + S+L AC
Sbjct: 91 PK------PNFYQRTVLIGAYSRHGFYQDVLDVFSEMQNERLRPNKFVIPSVLRAC 140
>gi|347954512|gb|AEP33756.1| chloroplast biogenesis 19, partial [Raphanus sativus]
Length = 476
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 81/144 (56%), Gaps = 11/144 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ L EAL F +Q + + P A + ++ C++L +L G VH +++S + +
Sbjct: 161 KGLNEEALAWFREMQVSG---VEPDYVAIIAALAACTNLGALSFGLWVHRYVVSQDFKNN 217
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + N ++++Y +CG +E AR V D+M +R V+ SWN++I G A+ +A+E++
Sbjct: 218 VRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVV------SWNSVIVGFAANGHAHESLVY 271
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F +M++ PD +T L AC+
Sbjct: 272 FRKMQEERFKPDAVTFTGALTACS 295
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 52/126 (41%), Gaps = 11/126 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILS-SKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T L+S CS L G +H + + V++ IL MY K AR+V D
Sbjct: 71 TLIALLSGCSDCEPL--GDSLHGYACKLGFDRNHVMVGTAILGMYSKRRRFRKARLVFDR 128
Query: 104 MPQRNVIE--------SPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
M N + DL S +I G EA++ F EM+ + PD + + +
Sbjct: 129 MGDXNSVTWNTMIDGYXRDLISXTXMINGFVKKGLNEEALAWFREMQVSGVEPDYVAIIA 188
Query: 156 LLCACT 161
L ACT
Sbjct: 189 ALAACT 194
>gi|297745258|emb|CBI40338.3| unnamed protein product [Vitis vinifera]
Length = 487
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 10/168 (5%)
Query: 1 MIRNLKTQLRFTFYNSQPIQNLYNEALVAFDFLQ-----NNTNFRIRPSTYACLISTCSS 55
++R L F+ +Q I+ + + D LQ +R T+ ++ C
Sbjct: 80 VLRRLHPSSHTVFWWNQLIRRSVHLGFLE-DVLQLYRRMQRLGWRPDHYTFPFVLKACGE 138
Query: 56 LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDL 115
+ S + G VH + +S + +V + N +++MYG+CG+ E+AR V DEM +R V DL
Sbjct: 139 IPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGV---GDL 195
Query: 116 ASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSLLCACTS 162
SWN+I+A ++ AM +F M D + PD +++ ++L AC S
Sbjct: 196 VSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACAS 243
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 77/141 (54%), Gaps = 10/141 (7%)
Query: 32 FLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYG 89
F + + IRP + + + C+S+ + G++VH + L S DV + N +++MY
Sbjct: 218 FERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYA 277
Query: 90 KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR--ELI 147
KCG +E+A V + M ++V+ SWNA++ G + ++A+ LF ++R+ EL
Sbjct: 278 KCGMMEEANKVFERMKVKDVV------SWNAMVTGYSQIGRFDDALGLFEKIREEKIELN 331
Query: 148 PDGLTVRSLLCACTSPSNVLY 168
P+ +T+ SLL C +L+
Sbjct: 332 PNVVTLVSLLSGCALAGTLLH 352
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 8/140 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
E A Q + ++P+ T L+S C+ L +L +G +H +I + + + DVVL
Sbjct: 184 GEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLG 243
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N +++MY KCG+LE A V + ++N+ WN+II G+ EA++ F M
Sbjct: 244 NALIDMYCKCGALEAAIDVFHGLSRKNIF------CWNSIIVGLGMNGRGEEAIAAFIVM 297
Query: 142 RDRELIPDGLTVRSLLCACT 161
+ PDG+T +L C+
Sbjct: 298 EKEGIKPDGVTFVGILSGCS 317
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
++++ ++ +C+ QLG H I+ + D++LQ +L+ Y K G L+ A+ V
Sbjct: 11 TSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAKRVFMG 70
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
MP+R+V+ + NA+I+ ++ EA +LF M +R
Sbjct: 71 MPRRDVVAN------NAMISALSKHGYVEEARNLFDNMTER 105
>gi|125559296|gb|EAZ04832.1| hypothetical protein OsI_27010 [Oryza sativa Indica Group]
Length = 700
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 10/142 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHD----HILSSKSQPDV 78
++EAL F + N+ + + TY +I C++L ++ GRKV + I S ++P+V
Sbjct: 130 FSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQGRKVWEMVEADIASGNARPNV 189
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+Q +++M+ KCG L++AR V + M R DLA+W A+I G N E + LF
Sbjct: 190 FVQCALVDMFAKCGCLDEARNVFESMQVR------DLAAWTAMIGGTVHSGNWLEVVDLF 243
Query: 139 SEMRDRELIPDGLTVRSLLCAC 160
+ MR D L +++ AC
Sbjct: 244 NHMRSEGFGVDSLIAATVISAC 265
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
F + A +IS C LQ+G +H + S + D+ + N +++MY KCG +E A
Sbjct: 250 GFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGASGDIYVSNALVDMYCKCGCVEMA 309
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+ S D+ SW+++I G + N ++SLF EM + P+ T+ S+L
Sbjct: 310 DCLFWS------TNSKDVVSWSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTLASIL 363
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 7/138 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+ A A LQ + T ++ C+ L G+++H +++ + N
Sbjct: 439 DSAFCALRLLQK-VGLKPDHVTVVSVLPLCNQHHMLIQGKELHAYVIKYCINSVCSVNNA 497
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+L+MY KCG LE A+ V M +RN + ++N +I+ ++ ++A+S F M+
Sbjct: 498 LLDMYCKCGFLEVAKEVFQLMTERNTV------TYNILISSFGKHNHEDQALSFFDLMKR 551
Query: 144 RELIPDGLTVRSLLCACT 161
+ PD +T +LL C+
Sbjct: 552 DGIAPDKVTFVALLSCCS 569
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++A L+ S Q R++H +L VL ++ Y K G + A V D M
Sbjct: 50 SHASLLLRLQSCPDFQEARRLHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDGM 109
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSLLCACTSP 163
P+RN +WNA+I G+ +EA+ +F M D + DG T ++ AC +
Sbjct: 110 PRRNSF------AWNAVIKGLVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAAL 163
Query: 164 SNV 166
V
Sbjct: 164 GAV 166
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
ST A ++ S L+ ++ G+++H + + + + ++++Y K G + A +
Sbjct: 357 STLASILPCLSVLKLIRSGKEIHCFSIRHGLERSEFVVSALIDLYSKQGLIRVAETIF-- 414
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ DLA WN+++AG A ++ A ++ L PD +TV S+L C
Sbjct: 415 ----WLTLDKDLAIWNSMVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLC 467
>gi|357461615|ref|XP_003601089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490137|gb|AES71340.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 745
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 26/140 (18%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y+ ++ C +R+++LG+ VH HI +K D+VL N +L+MY KCGSL DA+ V E+P
Sbjct: 108 YSAVLKACGLVRNVELGKMVHYHIFQAKLDVDIVLMNALLDMYVKCGSLRDAQRVFCEIP 167
Query: 106 QRNV-------------------------IESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+N + PD+ SWN+IIAG+ + ++ A+ S
Sbjct: 168 CKNATSWNTLILGYAKQGLIDDAMKLFDKMPEPDIVSWNSIIAGLVDNA-SSRALRFVSM 226
Query: 141 MRDRELIPDGLTVRSLLCAC 160
M + L D T S+L AC
Sbjct: 227 MHGKGLKMDEFTFPSVLKAC 246
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ CSSL S Q G++VH L + + V+ +++MY KCG +EDA +
Sbjct: 449 VLKACSSLASHQHGKQVHSLCLKKGYESEGVVTTALIDMYAKCGDIEDA------LSLFG 502
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ D SW +II G A A EA+SL +M + P+ +T+ +L AC
Sbjct: 503 CLSEIDTMSWTSIIVGCAQNGRAEEAISLLHKMIESGTKPNKITILGVLTAC 554
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 66/115 (57%), Gaps = 7/115 (6%)
Query: 53 CSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIES 112
C RS++ + +H HI+ S + + N ++++Y KC S+ DAR + DEMP RN++
Sbjct: 13 CIRFRSIKNAKSLHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNMFDEMPHRNIV-- 70
Query: 113 PDLASWNAIIAGVASPSNANEAMSLFSEMRDREL-IPDGLTVRSLLCACTSPSNV 166
SW +++ + + S +EA+SL++EM + ++ P+ ++L AC NV
Sbjct: 71 ----SWTTMVSVLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNV 121
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 7/140 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y EAL + + R T++ ++ C + +L L +VH +++S + D V+ +
Sbjct: 323 YVEALSMISHMHR-SGVRFDFYTFSIVLKICMNFDNLSLASQVHGFVITSGYELDCVVGS 381
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++++Y K GS+ +A + + +P ++V+ +W+++I G A + A SLF +M
Sbjct: 382 ILIDIYAKQGSINNALRLFERLPDKDVV------AWSSLITGCARFGSDKLAFSLFMDMI 435
Query: 143 DRELIPDGLTVRSLLCACTS 162
L D + +L AC+S
Sbjct: 436 HLGLQIDHFVISIVLKACSS 455
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 1/137 (0%)
Query: 30 FDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYG 89
F + + ++ T+ ++ C L LGR++H +I+ S + + +++MY
Sbjct: 223 FVSMMHGKGLKMDEFTFPSVLKACGCSDELMLGREIHCYIIKSGFESSCYCISALIDMYS 282
Query: 90 KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD 149
C L +A + D+ RN S LA WN++++G + EA+S+ S M + D
Sbjct: 283 SCKLLSEATKIFDQYF-RNSSVSESLALWNSMLSGHVVNGDYVEALSMISHMHRSGVRFD 341
Query: 150 GLTVRSLLCACTSPSNV 166
T +L C + N+
Sbjct: 342 FYTFSIVLKICMNFDNL 358
>gi|224118652|ref|XP_002331415.1| predicted protein [Populus trichocarpa]
gi|222873629|gb|EEF10760.1| predicted protein [Populus trichocarpa]
Length = 458
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 75/124 (60%), Gaps = 9/124 (7%)
Query: 41 IRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I+P +T A ++S C+ L SL +G+++ ++ILS+ Q D +Q +++M+ KCGS+ A
Sbjct: 81 IKPNGATLATILSACADLGSLDMGKEIEEYILSNGFQSDRQVQTSLIHMFSKCGSIGKAI 140
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD-RELIPDGLTVRSLL 157
V + I DLA+W+++I G A A EA+ LF +M + +E+ PD + S+L
Sbjct: 141 SVFER------ISDKDLAAWSSMINGYAIHGMAEEALGLFHKMLEIKEIKPDAVVFTSIL 194
Query: 158 CACT 161
AC+
Sbjct: 195 LACS 198
Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
L N +L MY KCG L AR V D + V W +II G EA+ LF
Sbjct: 21 LDNLLLGMYAKCGDLISARKVFDMALVKTVF------LWTSIIGGYTHMGYPAEALLLFK 74
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
++ + P+G T+ ++L AC
Sbjct: 75 KLLKTAIKPNGATLATILSACA 96
>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
Length = 679
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 85/146 (58%), Gaps = 12/146 (8%)
Query: 19 IQN-LYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQ 75
+QN +++E L F Q +I+P+ +++ ++ C+ L +L LG+++H +I+ S+
Sbjct: 273 VQNGMFDEGL---KFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFD 329
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
+V + + +++MY KCG++ AR + D+M E D+ SW A+I G A +A +A+
Sbjct: 330 GNVFIASALVDMYAKCGNIRTARWIFDKM------ELYDMVSWTAMIMGYALHGHAYDAI 383
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACT 161
SLF M + P+ + ++L AC+
Sbjct: 384 SLFKRMEVEGVKPNYVAFMAVLTACS 409
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 36 NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
N + R T + ++ + +L G+++H + + + DV + + +++MY KC ++
Sbjct: 189 NADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVD 248
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
D+ V +PQ + I SWN+IIAG +E + F +M ++ P+ ++ S
Sbjct: 249 DSCRVFYMLPQHDGI------SWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSS 302
Query: 156 LLCAC 160
++ AC
Sbjct: 303 IMPAC 307
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 9/66 (13%)
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL 151
GSL R V + MP+R D+ SWN +I+G A +A+ + EM + +L PD
Sbjct: 147 GSL---RKVFEMMPKR------DIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSF 197
Query: 152 TVRSLL 157
T+ S+L
Sbjct: 198 TLSSVL 203
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 83/146 (56%), Gaps = 12/146 (8%)
Query: 19 IQN-LYNEALVAFDFLQNNTNFRIRPST--YACLISTCSSLRSLQLGRKVHDHILSSKSQ 75
+QN YNEAL F + + ++RP ++ +I C+ L +L LG+++H ++L
Sbjct: 283 VQNGRYNEALRLF---RQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFG 339
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
++ + + +++MY KCG+++ AR + D M D SW AII G A + +EA+
Sbjct: 340 RNIFIASALVDMYSKCGNIQAARKIFDRMNLH------DEVSWTAIIMGHALHGHGHEAV 393
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACT 161
SLF EM+ + + P+ + ++L AC+
Sbjct: 394 SLFEEMKRQGVKPNQVAFVAVLTACS 419
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 13/141 (9%)
Query: 20 QNLYNEALVAFDFLQNN---TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
Q+L++ AL +F ++ + + + PS ++ +C+ + L+ G VH I+
Sbjct: 83 QSLFSRALASFVEMRASGRCPDHNVFPS----VLKSCTMMMDLRFGESVHGFIVRLGMDC 138
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D+ N ++NMY K ++ R V + MP+++V+ S+N +IAG A +A+
Sbjct: 139 DLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVV------SYNTVIAGYAQSGMYEDALR 192
Query: 137 LFSEMRDRELIPDGLTVRSLL 157
+ EM +L PD T+ S+L
Sbjct: 193 MVREMGTSDLKPDAFTLSSVL 213
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
G+++H +++ DV + + +++MY K +ED+ V + +R+ I SWN++
Sbjct: 225 GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSI------SWNSL 278
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+AG NEA+ LF +M ++ P + S++ AC
Sbjct: 279 VAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPAC 317
Score = 35.8 bits (81), Expect = 6.4, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 7/113 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
LI + ++S +++H + ++S + ++++Y L +A +V
Sbjct: 11 LIKNPTRIKSKSQAKQLHAQFIRTQSLSHTS-ASIVISIYTNLKLLHEALLVF------K 63
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ESP + +W ++I S + A++ F EMR PD S+L +CT
Sbjct: 64 TLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCT 116
>gi|255575746|ref|XP_002528772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531775|gb|EEF33594.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 676
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 83/159 (52%), Gaps = 12/159 (7%)
Query: 6 KTQLRFTFYNSQPIQN-LYNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLG 62
K + +T S ++N L+ EA F + +RP STYA L ++ SL G
Sbjct: 362 KDAVAWTTMISGHVRNELFAEATYLFSEMLTQG---VRPLSSTYAILFGAAGAVASLDQG 418
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
R++H + + S D++L+N +++MY KCG + +A + +M S DL SWN++I
Sbjct: 419 RQLHAMLTKTLSDNDLILENSLISMYAKCGEIRNAYRIFSQMI------SHDLISWNSMI 472
Query: 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
G + ANEA+ +F M D P+ +T +L AC+
Sbjct: 473 MGFSHHGLANEALEVFEAMVDSGTHPNSVTFLGVLSACS 511
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 73 KSQPD--VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN 130
+ PD VV N ++ + G LE AR+V DE P +N ASWN +IAG A
Sbjct: 96 EEMPDRNVVSWNAMIVGLIRNGDLEAARMVFDESPVKNA------ASWNGMIAGYAENGR 149
Query: 131 ANEAMSLFSEMRDRELI 147
EA +LF EM DR +I
Sbjct: 150 MEEARALFDEMEDRNVI 166
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+ + V N +L+ +CG L +A + +EMP+RNV+ SW +++ G+A EA
Sbjct: 38 ERNAVSYNALLSGLLQCGRLSEAMKLFEEMPERNVV------SWTSMLCGLADAGKICEA 91
Query: 135 MSLFSEMRDRELI 147
SLF EM DR ++
Sbjct: 92 KSLFEEMPDRNVV 104
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+V +L+ Y + G +++AR + D MP+RN + S+NA+++G+ +EAM L
Sbjct: 10 IVYWTSLLSKYSRSGFVDEARALFDIMPERNAV------SYNALLSGLLQCGRLSEAMKL 63
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNV 166
F EM +R ++ + S+LC +
Sbjct: 64 FEEMPERNVV----SWTSMLCGLADAGKI 88
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 41/162 (25%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHD------------- 67
Y +AL+ F ++ + T+ L C+ L +LG+++H
Sbjct: 210 GFYEDALLLFLEMKRGADITPNIETFISLAYACAGLGFHRLGKQLHARLITEGLDNDDYD 269
Query: 68 --------------------HILSSKSQPDVVLQ--NYILNMYGKCGSLEDARVVSDEMP 105
H + +K+ V+Q NY++N Y + G L+ A+ + D MP
Sbjct: 270 GRLSKGLICMYSSIGFMDYAHYIFNKNSNYYVVQSCNYMINGYIRIGLLDKAQNLFDTMP 329
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
R+ I +W ++I G N +EA SLF M +++ +
Sbjct: 330 VRDKI------TWTSMIDGYLVIGNVSEACSLFLYMPEKDAV 365
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++ Y + G +E+AR + DEM RNVI +W ++++G E LF M
Sbjct: 138 NGMIAGYAENGRMEEARALFDEMEDRNVI------TWTSMVSGYCRAGEVEEGYHLFRTM 191
Query: 142 RDRELI 147
R ++
Sbjct: 192 PKRNIV 197
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+V+ +++ Y + G +E+ + MP+RN++ SW A+I G +A+
Sbjct: 164 NVITWTSMVSGYCRAGEVEEGYHLFRTMPKRNIV------SWTAMIGGFTWNGFYEDALL 217
Query: 137 LFSEM-RDRELIPDGLTVRSLLCACTS 162
LF EM R ++ P+ T SL AC
Sbjct: 218 LFLEMKRGADITPNIETFISLAYACAG 244
>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33680-like [Cucumis sativus]
Length = 710
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
RI P T A ++ CSSL +L+ G+++H + +V + + + MY KCGSLED
Sbjct: 411 RIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDG 470
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+V MP R D+ +WNA+I+G++ +A+ LF E+R PD +T ++L
Sbjct: 471 NLVFRRMPSR------DIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVL 524
Query: 158 CACT 161
AC+
Sbjct: 525 SACS 528
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 78/141 (55%), Gaps = 11/141 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+EAL F + N N +PS T+ +I+ CS + +L+ G+++H + L + + +
Sbjct: 297 HEALNLFYNMHLNGN---KPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFM 353
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+++MY KCGSL DAR D + + PD+ W ++I+G A A++L+ M
Sbjct: 354 TALVDMYAKCGSLVDARKGFDYLKE------PDIVLWTSMISGYAQNGENETALTLYCRM 407
Query: 142 RDRELIPDGLTVRSLLCACTS 162
+ ++P LT+ S+L AC+S
Sbjct: 408 QMERIMPHELTMASVLRACSS 428
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 8/116 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+ C+ + LQ G+ +H +L + S V L N ++N+Y KCGS+ A++V + + ++
Sbjct: 16 LLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNKD 75
Query: 109 VIESPDLASWNAIIAGVASPSNANEA--MSLFSEMRDRELIPDGLTVRSLLCACTS 162
V+ SWN +I G + + M LF MR +P+G T + A +S
Sbjct: 76 VV------SWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASS 125
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ + + SS G + H + + + DV + + ++NMY K G + DAR V D +
Sbjct: 115 TFSGVFTAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTI 174
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P+RN + SW II+G A A EA LF MR E D S+L A T P
Sbjct: 175 PERNTV------SWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPD 228
Query: 165 NVLY 168
V Y
Sbjct: 229 LVHY 232
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y ++S + + G+++H L + + N ++ MYGKCG L+DA +
Sbjct: 217 YTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDA------LK 270
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ D +W+A+I G A +++EA++LF M P T ++ AC+
Sbjct: 271 TFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACS 326
>gi|449450476|ref|XP_004142988.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33680-like [Cucumis sativus]
Length = 692
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
RI P T A ++ CSSL +L+ G+++H + +V + + + MY KCGSLED
Sbjct: 393 RIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDG 452
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+V MP R D+ +WNA+I+G++ +A+ LF E+R PD +T ++L
Sbjct: 453 NLVFRRMPSR------DIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVL 506
Query: 158 CACT 161
AC+
Sbjct: 507 SACS 510
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 8/116 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+ C+ + LQ G+ +H +L + S V L N ++N+Y KCGS+ A++V + + ++
Sbjct: 16 LLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNKD 75
Query: 109 VIESPDLASWNAIIAGVASPSNANEA--MSLFSEMRDRELIPDGLTVRSLLCACTS 162
V+ SWN +I G + + M LF MR +P+G T + A +S
Sbjct: 76 VV------SWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASS 125
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ + + SS G + H + + + DV + + ++NMY K G + DAR V D +
Sbjct: 115 TFSGVFTAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTI 174
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P+RN + SW II+G A A EA LF MR E D S+L A T P
Sbjct: 175 PERNTV------SWATIISGYAMERMAFEAWELFLLMRREEGAHDKFIYTSVLSALTVPD 228
Query: 165 NVLY 168
V Y
Sbjct: 229 LVHY 232
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 29/141 (20%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+EAL F + N N +PS T+ +I+ CS + +L+ G+++H + L + + + +
Sbjct: 297 HEALNLFYNMHLNGN---KPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFR 353
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+ KCGSL DAR D + + PD+ W + M
Sbjct: 354 KGFDYLKAKCGSLVDARKGFDYLKE------PDIVLWTS------------------CRM 389
Query: 142 RDRELIPDGLTVRSLLCACTS 162
+ ++P LT+ S+L AC+S
Sbjct: 390 QMERIMPHELTMASVLRACSS 410
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y ++S + + G+++H L + + N ++ MYGKCG L+DA
Sbjct: 217 YTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDA------FK 270
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ D +W+A+I G A +++EA++LF M P T ++ AC+
Sbjct: 271 TFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACS 326
>gi|115473581|ref|NP_001060389.1| Os07g0635800 [Oryza sativa Japonica Group]
gi|22293699|dbj|BAC10044.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113611925|dbj|BAF22303.1| Os07g0635800 [Oryza sativa Japonica Group]
gi|125601219|gb|EAZ40795.1| hypothetical protein OsJ_25273 [Oryza sativa Japonica Group]
Length = 705
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 10/142 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHD----HILSSKSQPDV 78
++EAL F + N+ + + TY +I C++L ++ GRKV + I S ++P+V
Sbjct: 135 FSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQGRKVWEMVETDIASGNARPNV 194
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+Q +++M+ KCG L++AR V + M R DLA+W A+I G N E + LF
Sbjct: 195 FVQCALVDMFAKCGCLDEARNVFESMQVR------DLAAWTAMIGGTVHSGNWLEVVDLF 248
Query: 139 SEMRDRELIPDGLTVRSLLCAC 160
+ MR D L +++ AC
Sbjct: 249 NHMRSEGFGVDSLIAATVISAC 270
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
F + A +IS C LQ+G +H + S + D+ + N +++MY KCG +E A
Sbjct: 255 GFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGASGDIYVSNALVDMYCKCGCVEMA 314
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+ S D+ SW+++I G + N ++SLF EM + P+ T+ S+L
Sbjct: 315 DCLFWS------TNSKDVVSWSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTLASIL 368
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 7/138 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+ A A LQ + T ++ C+ L G+++H +++ + N
Sbjct: 444 DSAFCALRLLQK-VGLKPDHVTVVSVLPLCNQHHMLIQGKELHAYVIKYCINSVCSVNNA 502
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+L+MY KCG LE A+ V M +RN + ++N +I+ ++ ++A+S F M+
Sbjct: 503 LLDMYCKCGFLEVAKEVFQLMTERNTV------TYNILISSFGKHNHEDQALSFFDLMKR 556
Query: 144 RELIPDGLTVRSLLCACT 161
+ PD +T +LL C+
Sbjct: 557 DGIAPDKVTFVALLSCCS 574
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++A L+ S Q R++H +L VL ++ Y K G + A V D M
Sbjct: 55 SHASLLLRLQSCPDFQEARRLHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDGM 114
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSLLCACTSP 163
P+RN +WNA+I G+ +EA+ +F M D + DG T ++ AC +
Sbjct: 115 PRRNSF------AWNAVIKGLVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAAL 168
Query: 164 SNV 166
V
Sbjct: 169 GAV 171
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
ST A ++ S L+ ++ G+++H + + + + ++++Y K G + A +
Sbjct: 362 STLASILPCLSVLKLIRSGKEIHCFSIRHGLERSEFVVSALIDLYSKQGLIRVAETIF-- 419
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ DLA WN+++AG A ++ A ++ L PD +TV S+L C
Sbjct: 420 ----WLTLDKDLAIWNSMVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLC 472
>gi|302766669|ref|XP_002966755.1| hypothetical protein SELMODRAFT_85926 [Selaginella moellendorffii]
gi|300166175|gb|EFJ32782.1| hypothetical protein SELMODRAFT_85926 [Selaginella moellendorffii]
Length = 811
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 11/125 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSK--SQPDVVLQNYILNMYGKCGSLEDARVVSD 102
T+ + CSS+ +L GR +H +L S QPDVVL +LNMYG+CG L+ A+ + D
Sbjct: 333 TFISALDACSSIGALSQGRAIHSRLLVSGIIQQPDVVLGTALLNMYGRCGVLDAAKSLFD 392
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
M +N I +WNA++ A EA++L+ M + P+ LT ++L AC++
Sbjct: 393 GMADKNTI------TWNALMGSYAQWGYGKEALNLYHSMDAQ---PNSLTFLAMLTACST 443
Query: 163 PSNVL 167
+L
Sbjct: 444 VGALL 448
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 43 PSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
P T L I+ CSS L GR +H I S + L N ++NMYG+C L AR
Sbjct: 127 PDTVMLLSAITACSSAEFLDDGRAIHAQISSRELDHHTHLGNGLVNMYGRCKELHRARKA 186
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+++ +N L SWN II A + AM LF M + D +T +L AC
Sbjct: 187 FEKITAKN------LVSWNVIIGAYAQEGHRGHAMELFQRMDPEGVAADAVTFLHVLDAC 240
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +++ CS++ +L GR H + + + +V + ++NMYGKCGSLEDA ++
Sbjct: 433 TFLAMLTACSTVGALLQGRAAHARLAPAGFEKEVEVGVALVNMYGKCGSLEDALGTFAKL 492
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++ V+ +W + +A E + LF+EM + PD + + + L AC+
Sbjct: 493 ERKTVV------TWTVAMLALAHHGEFRETLRLFTEMELDGVAPDSVALLAALFACS 543
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C + + R++H + S + DV + + ++N YGKCG L +A+ V D M
Sbjct: 232 TFLHVLDACGGVEAAGDVRRIHKKLELSGLEWDVFVASSLVNAYGKCGCLAEAKRVFDTM 291
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P +N + + +++A A EA+ ++ EM + D +T S L AC+S
Sbjct: 292 PLKNTV------TMTSMLAAYAQHGLGEEALEIYREMESQGRKADRVTFISALDACSS 343
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 20/129 (15%)
Query: 50 ISTCSSLRS--LQLGRKVHDHI-------------LSSKSQPDVVLQNYILNMYGKCGSL 94
IS C+ L S L GR++H+ ++ + D ++ +++MY KCGSL
Sbjct: 17 ISACARLGSAFLSQGRELHERYCQWWRRGGGGEVAVAVAGEEDDLVATALVDMYSKCGSL 76
Query: 95 EDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE-MRDRELIPDGLTV 153
+DAR V D+ ++S +A W A+++G A ++ +A+ L+ + PD + +
Sbjct: 77 DDARRVFDDYS----VDSKRMALWTAMVSGYALHGHSRQALELYQRFLSVSSEPPDTVML 132
Query: 154 RSLLCACTS 162
S + AC+S
Sbjct: 133 LSAITACSS 141
>gi|147844170|emb|CAN80560.1| hypothetical protein VITISV_031385 [Vitis vinifera]
Length = 730
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ + L F + TN R T+ ++ C+ L S+ G+++H H++ + D+ + N
Sbjct: 291 HAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTSLYRDLGVDN 350
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++NMY KCG + A + +M N L SWN IIAG + A+ LF +M
Sbjct: 351 ALVNMYAKCGCIGYAYDIFSKMVHHN------LVSWNTIIAGFGNHGLGERAVELFEQMN 404
Query: 143 DRELIPDGLTVRSLLCAC 160
+ PD +T LL AC
Sbjct: 405 AIGIRPDSVTFIGLLTAC 422
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 9/125 (7%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RI + L C + +L+ G +H +L + +Q DV + N++LNMY KCG AR
Sbjct: 7 RIWKTLKKILCYGCDIVNALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQ 66
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V DEM ++N L SW+A+I+G A+ L+S+M L+P+ S++ A
Sbjct: 67 VFDEMFEKN------LVSWSAMISGYDQAGEPQMAIDLYSQMF---LVPNEYVFASVISA 117
Query: 160 CTSPS 164
C S S
Sbjct: 118 CASLS 122
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
+A +IS C+SL +L G+K+H L + + N +++MY KC DA V
Sbjct: 110 VFASVISACASLSALTQGQKIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNT 169
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P+ P+ S+NA+I G F M + LIPD +L CT+
Sbjct: 170 PE------PNCVSYNALITGFVENQQLERGFEFFKLMXQQGLIPDRFAFMGVLGICTTTE 223
Query: 165 NV 166
N+
Sbjct: 224 NL 225
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 9/137 (6%)
Query: 29 AFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
F+F + + P +A + + C++ +L+ G ++H + + N I+
Sbjct: 193 GFEFFKLMXQQGLIPDRFAFMGVLGICTTTENLKRGTELHCQTVKLNLDSTPFIGNVIIT 252
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY + +++A +IE D+ SWN +IA + + + + +F M +
Sbjct: 253 MYSELNLIQEAE------KAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETN 306
Query: 147 I-PDGLTVRSLLCACTS 162
+ PD T S L AC
Sbjct: 307 VRPDDFTFTSALAACAG 323
>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
Length = 818
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 8/120 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ +CSS + GR +H+ I S+ + D ++ N +++MYGKC SL DAR V + M
Sbjct: 9 TFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESM 68
Query: 105 P--QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
QRNV+ SWNA+IA A ++ EA+ L+ M + L D +T S+L AC+S
Sbjct: 69 DWRQRNVV------SWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS 122
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 53/169 (31%), Positives = 78/169 (46%), Gaps = 30/169 (17%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
++EAL + L + F+ +T+ ++ CSS+++L GR VH HIL +V +
Sbjct: 289 FHEALELYQKL-DMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVAT 347
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIE----------------------------SPD 114
++NMY KCGSLE+AR V + M R+ + S D
Sbjct: 348 ALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRD 407
Query: 115 LASWNAIIAGVASPSNANEAMSLFSEMRDRE-LIPDGLTVRSLLCACTS 162
SWNA+I A AM +F EM L PD +T ++L AC S
Sbjct: 408 TISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACAS 456
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C+SL L + +H I S+ + +VV+ N ++NMY +CGSLE+A +
Sbjct: 446 TFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAA 505
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++ V+ SW A++A + EA+ LF EM + PD +T S+L CT
Sbjct: 506 KEKTVV------SWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCT 556
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 6/131 (4%)
Query: 32 FLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91
F + + + +TY +IS S+ L GRK+H I+++ D+V+ ++NMYGKC
Sbjct: 196 FKEMKCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKC 255
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL 151
GS +AR V D+M +R D+ SWN +I + +EA+ L+ ++
Sbjct: 256 GSSHEAREVFDKMKKR------DMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKA 309
Query: 152 TVRSLLCACTS 162
T S+L AC+S
Sbjct: 310 TFVSILGACSS 320
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ CSSL GR++H+ + S L N ++ MY + GS+ DA+ + +
Sbjct: 112 TFVSVLGACSSLAQ---GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSL 168
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
R D SWNA+I + + + A+ +F EM+ ++ P+ T +++ ++P
Sbjct: 169 QTR------DETSWNAVILAHSQSGDWSGALRIFKEMK-CDVKPNSTTYINVISGFSTP 220
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T L+S + L +L+LGR+VH ++L + + N +L++Y KCG++ +A+ V EM
Sbjct: 221 TVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEM 280
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+RN + SW ++I G+A EA+ LF EM + L+P +T +L AC+
Sbjct: 281 SERNAV------SWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACS 331
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY L+ S +++ G +H + + + V +QN +L++Y CG E A V + M
Sbjct: 120 TYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELM 179
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+R DL +WN++I G A NEA++LF EM + PDG TV SLL A
Sbjct: 180 KER------DLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSA 228
>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
Length = 832
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+N+ALV F +Q + + I+P T+ L++ C++ R+ GR++H H++ + ++++
Sbjct: 257 FNDALVLFLRMQESED-GIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIV 315
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ +++MY +CG L A+ + + M +RN SWN++I G EA+ LF +
Sbjct: 316 ETELVHMYSECGRLNYAKEIFNRMAERNAY------SWNSMIEGYQQNGETQEALRLFKQ 369
Query: 141 MRDRELIPDGLTVRSLLCACTSPSN 165
M+ + PD ++ S+L +C S S+
Sbjct: 370 MQLNGIKPDCFSLSSMLSSCVSLSD 394
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 8/123 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A + C +LRS G++VH +++ + D + N +++MY KC E V DEM
Sbjct: 177 TFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEM 236
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE--LIPDGLTVRSLLCACTS 162
+RN + +WN+II+ A + N+A+ LF M++ E + PD T +LL C +
Sbjct: 237 GERNQV------TWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCAN 290
Query: 163 PSN 165
N
Sbjct: 291 QRN 293
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED---A 97
+ P Y+ LI C S Q G+ +H ++S+ PD L IL +Y + G L+D A
Sbjct: 69 VNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYA 128
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R + +EMP+RN L +WN +I A + EA +F M + PD T S L
Sbjct: 129 RKLFEEMPERN------LTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASAL 182
Query: 158 CACTS 162
C +
Sbjct: 183 RVCGA 187
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 79/135 (58%), Gaps = 9/135 (6%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
EAL F +Q N I+P ++ ++S+C SL Q GR++H+ I+ + + + +LQ
Sbjct: 362 EALRLFKQMQLNG---IKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQV 418
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCGS++ A V D+ +++ + A WN+I+AG A+ E+ + F EM
Sbjct: 419 VLVDMYAKCGSMDYAWKVYDQTIKKD----RNTALWNSILAGYANKGLKKESFNHFLEML 474
Query: 143 DRELIPDGLTVRSLL 157
+ ++ D LT+ +++
Sbjct: 475 ESDIEYDVLTMVTIV 489
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 52/84 (61%), Gaps = 6/84 (7%)
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+VL+ +++MY KCG++ AR V D M +N++ SWNA+I+G + + EA+ L
Sbjct: 492 LVLETALVDMYSKCGAITKARTVFDNMNGKNIV------SWNAMISGYSKHGCSKEALIL 545
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
+ EM + + P+ +T ++L AC+
Sbjct: 546 YEEMPKKGMYPNEVTFLAILSACS 569
>gi|302822891|ref|XP_002993101.1| hypothetical protein SELMODRAFT_42377 [Selaginella moellendorffii]
gi|300139101|gb|EFJ05849.1| hypothetical protein SELMODRAFT_42377 [Selaginella moellendorffii]
Length = 480
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 8/128 (6%)
Query: 41 IRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I+P+ + C +I +S R L LGR +H I+ + + V++N ++NMY +CGSL DA
Sbjct: 59 IKPTIFPCAAVIGIAASSRDLALGRWMHARIVHQGLRINAVVENSLVNMYARCGSLGDAM 118
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V D M R VI +W ++IAG + A+ LF M ++P+ +T S+L
Sbjct: 119 EVFDAMLDRGVI------AWTSLIAGFVQRGDHARALGLFRAMALEGVMPNDITFSSVLD 172
Query: 159 ACTSPSNV 166
AC+ ++
Sbjct: 173 ACSGAGDL 180
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILS-SKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T++ ++ CS L GR H IL + D I+ MYG+CGS+ DA
Sbjct: 166 TFSSVLDACSGAGDLAQGRIAHAQILEFAAGAIDPATGAEIVAMYGRCGSVGDAERAF-- 223
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
I+ PDL +NA+I A + A+ L +MR RE++PD T +L
Sbjct: 224 ----QAIDRPDLGLYNAMITVYAQTGRGDRALELIQQMRAREILPDEGTFARVL 273
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 29 AFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A + +Q I P T+A ++S+ +L+ GR ++ + ++ S VVLQ I+
Sbjct: 250 ALELIQQMRAREILPDEGTFARVLSSLHDRATLERGRAIYLELAAAGSPLGVVLQTSIVK 309
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
MY G +++A + M ES D+ SW +I + EA+ LF R
Sbjct: 310 MYLNAGWIDEAAEIFSRM------ESRDMFSWTVMITALTERGRGREALDLFRHTR 359
>gi|357501047|ref|XP_003620812.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495827|gb|AES77030.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 468
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
S + L+ C L+SL+LG++VH+ + SK +V L N ++ +Y KCGS++DAR V D+
Sbjct: 100 SDFLSLLKLCEDLKSLELGKRVHEFLRRSKFGGNVELCNRLIGLYVKCGSVKDARKVFDK 159
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
MP RNV S N +I G + + +F +MR + ++PD T +L C
Sbjct: 160 MPDRNV------GSLNLMIGGYNVNGLGIDGLLVFKQMRQQGVVPDEETFALVLAVCA 211
>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
Length = 633
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P Y +I+ C+ ++L R +H H+ S D L N +++MY KCG++ DAR V D
Sbjct: 60 PRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFD 119
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+MP R+V+ SW +IAG A EA+ L +M P+G T SLL A
Sbjct: 120 KMPSRDVV------SWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKA 170
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 27 LVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
L+ F +Q N F TY+ + S + + +L+ GR VH H++ S + + N +L
Sbjct: 247 LMKFAEMQRN-GFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLG 305
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY K GS+ DAR V D M +R DL +WN ++ +A EA++ F E+R +
Sbjct: 306 MYAKSGSMVDARKVFDRMDKR------DLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGI 359
Query: 147 IPDGLTVRSLLCACT 161
+ +T S+L AC+
Sbjct: 360 QLNQITFLSVLTACS 374
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 8/133 (6%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A L + R RP+ T+ L+ + +G ++H + DV + + +L+
Sbjct: 145 AIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLD 204
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY +C ++ A +V D + +N + SWNA+IAG A ++ + F+EM+
Sbjct: 205 MYARCEQMDMAIMVFDRLVSKNEV------SWNALIAGFARKADGETTLMKFAEMQRNGF 258
Query: 147 IPDGLTVRSLLCA 159
T S+ A
Sbjct: 259 GATHFTYSSMFSA 271
>gi|326532424|dbj|BAK05141.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 413
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T LI C+ L +LQ G+ H ++ P+ + N +++MY KCG + +R + D
Sbjct: 42 ATMVSLIPACAHLAALQHGKCSHGSVIVRGMAPETSICNALIDMYAKCGRIAFSRQIFDA 101
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
MP R D+ SWN +IAG EA +LF +M++ PDG+T L+ AC+
Sbjct: 102 MPSR------DIVSWNTMIAGYGIHGLGKEATALFLDMKNHACEPDGVTFICLISACSHS 155
Query: 164 SNV 166
V
Sbjct: 156 GLV 158
>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
Length = 813
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 7/137 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EA + F +Q N +T LI CS L +LQ GR H ++ + + N +
Sbjct: 424 EAFLVFKKMQA-CNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNAL 482
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MY KCG ++ +R V + MP R D+ SWN +IAG EA +LF EM +
Sbjct: 483 IDMYAKCGRIDLSRQVFNMMPSR------DIVSWNTMIAGYGIHGLGKEATALFLEMNNL 536
Query: 145 ELIPDGLTVRSLLCACT 161
PDG+T LL AC+
Sbjct: 537 GFPPDGVTFICLLSACS 553
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
+ P++ A + C+SL L++G ++H + S D+ N +L+MY K G ++ A +
Sbjct: 338 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIAL 397
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
DEM + D S++A+++G A EA +F +M+ + PD T+ SL+ AC
Sbjct: 398 FDEMAVK------DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPAC 451
Query: 161 T 161
+
Sbjct: 452 S 452
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
R+ P+ T+ + CS+L GR +H H + + Q D+ + +L+MY KC L DA
Sbjct: 120 RVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDA 179
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS--LFSEMRDRELIPDGLTVRS 155
+ MP R DL +WNA++AG A + A++ L +M+ L P+ T+ +
Sbjct: 180 AHIFATMPAR------DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVA 233
Query: 156 LL 157
LL
Sbjct: 234 LL 235
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 20/156 (12%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+Y+ A+ +Q + R+RP ST L+ + +L G VH + + + P+
Sbjct: 204 HGMYHHAVAHLLSMQMQMH-RLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPN 262
Query: 78 ----------VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127
V+L +L+MY KCGSL AR V D MP RN + +W+A+I G
Sbjct: 263 RNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV------TWSALIGGFVL 316
Query: 128 PSNANEAMSLFSEMRDREL-IPDGLTVRSLLCACTS 162
S +A LF M + L ++ S L AC S
Sbjct: 317 CSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACAS 352
>gi|357501237|ref|XP_003620907.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495922|gb|AES77125.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 468
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
S + L+ C L+SL+LG++VH+ + SK +V L N ++ +Y KCGS++DAR V D+
Sbjct: 100 SDFLSLLKLCEDLKSLELGKRVHEFLRRSKFGGNVELCNRLIGLYVKCGSVKDARKVFDK 159
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
MP RNV S N +I G + + +F +MR + ++PD T +L C
Sbjct: 160 MPDRNV------GSLNLMIGGYNVNGLGIDGLLVFKQMRQQGVVPDEETFALVLAVCA 211
>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
Length = 736
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ + CS + + GR++ ++S D ++QN ++NMY KCGSLE AR V D +
Sbjct: 165 TFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRL 224
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R+VI +WN +I+G A A +A+ LF M + P+ +T LL ACT
Sbjct: 225 KNRDVI------AWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACT 275
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC-GSLEDARVVSDE 103
T+ L++ C++L L+ GR +H + + D+V+ N +LNMY KC SLE+AR V +
Sbjct: 266 TFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFER 325
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ R+VI +WN +I A +A+ +F +M+ + P+ +T+ ++L AC
Sbjct: 326 LRTRDVI------TWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACA 377
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y +A A D + + P+ T + ++S C+ L + + G+ VH I S + + DVVL
Sbjct: 344 YGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVL 403
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+N ++NMY +CGSL+D V I L SW+ +IA A ++ + F E
Sbjct: 404 ENSLMNMYNRCGSLDDTVGVF------AAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWE 457
Query: 141 MRDRELIPDGLTVRSLLCACT 161
+ L D +T+ S L AC+
Sbjct: 458 LLQEGLAADDVTMVSTLSACS 478
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 71/132 (53%), Gaps = 12/132 (9%)
Query: 41 IRP--STYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKCGSLEDA 97
+RP + + I CSS + L+ G+ +H IL ++ + D++L ++ MY +C LE A
Sbjct: 54 LRPDGAMFVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELA 113
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE---LIPDGLTVR 154
R DEM ++ ++ +WNA+IAG + + A+ ++ +M + + PD +T
Sbjct: 114 RKTFDEMGKKTLV------TWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFS 167
Query: 155 SLLCACTSPSNV 166
S L AC+ ++
Sbjct: 168 SALYACSVVGDI 179
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MYGKCGS+ DA V + IE P+ SW I+A A + EA+ + M L
Sbjct: 1 MYGKCGSVADALAVF------HAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGL 54
Query: 147 IPDGLTVRSLLCACTSPSNV 166
PDG + C+S ++
Sbjct: 55 RPDGAMFVVAIGVCSSSKDL 74
>gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa]
gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa]
Length = 852
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 37/175 (21%)
Query: 20 QNLYNEALVAFDFLQNNT---NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
L+ EA + F LQ + +F + P + CS L S++LGR++H ++ +
Sbjct: 138 HGLFEEAFLLFQVLQFDGVELDFFVFPLVF----KACSGLGSVELGRQLHGLVIKFRFCL 193
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRN----------------VIES-------- 112
++ + N +++MYGKCGSL+DA+ V +MP+R+ V E+
Sbjct: 194 NIYVSNALIDMYGKCGSLDDAKKVLVKMPERDSVTWNSVITACAANGMVYEALEFLEKMK 253
Query: 113 ------PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P++ SW+A+I G A EA+ + M+ L+P+ T+ +L AC
Sbjct: 254 SLDYSMPNVVSWSAVIGGFAQNGYDEEAIEMLFRMQVEGLVPNAQTLAGVLPACA 308
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 40 RIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
++RP Y ++ CS L +L+ G++ H H + DV + +++MY KCGSL+ A
Sbjct: 565 KLRPDIYTVGIILPACSRLATLERGKQAHAHSIKCGYDTDVHIGAALVDMYAKCGSLKYA 624
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
++ D I +P+L S NA++ A + E +SLF M IPD +T S+L
Sbjct: 625 QLAYDR------ISNPNLVSHNAMLTACAMHGHGEEGISLFQTMLALGFIPDHVTFLSVL 678
Query: 158 CACTSPSNV 166
+C +V
Sbjct: 679 SSCVHVGSV 687
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+++EA F + T +++ C+ SL+ G+++H + Q D +
Sbjct: 413 MFDEAFSMFQNMLMEEGIEPDSFTLGSVLTACADTISLRQGKEIHAQAIVKGLQSDTFVG 472
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNV---------------IE--------------S 112
++ MY KC L A+V DE+ +++V IE
Sbjct: 473 GALVEMYSKCQDLTAAQVAFDEVMEKDVPTWNALISGYTRSNQIERIQYLLEKMKGDGYH 532
Query: 113 PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P++ +WN+I+AG+ + M LFSEM+ +L PD TV +L AC+
Sbjct: 533 PNIYTWNSILAGLVENRQLDLTMQLFSEMQISKLRPDIYTVGIILPACS 581
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 30/172 (17%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
QN Y+E + F T A ++ C+ L+ L LG+++H +I + V
Sbjct: 274 QNGYDEEAIEMLFRMQVEGLVPNAQTLAGVLPACARLQRLDLGKQLHGYITRHDFISNPV 333
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVI----------ESPD--------------- 114
+ N ++++Y +CG + A + + +NV+ ES D
Sbjct: 334 VVNALVDVYRRCGDMGGAAKIFLKFSVKNVLSCNTMIVGYCESGDVSKAKELFDCMDVLG 393
Query: 115 ----LASWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCACT 161
L SWN+II+G +EA S+F M E I PD T+ S+L AC
Sbjct: 394 IERGLISWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPDSFTLGSVLTACA 445
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 15/139 (10%)
Query: 34 QNNTNFRI---RP---STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNM 87
+N +NF + +P S YA ++ +C + +LG++VH H + + D + +L M
Sbjct: 47 KNRSNFSLLDNKPLNTSKYASVLDSC---KCPKLGKQVHAHTIKTGFDADGFIDTKLLQM 103
Query: 88 YGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
Y +CG L+DA + + MP RN L SW AI++ EA LF ++ +
Sbjct: 104 YARCGLLKDADFLFETMPMRN------LHSWKAILSVYLDHGLFEEAFLLFQVLQFDGVE 157
Query: 148 PDGLTVRSLLCACTSPSNV 166
D + AC+ +V
Sbjct: 158 LDFFVFPLVFKACSGLGSV 176
>gi|255543589|ref|XP_002512857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547868|gb|EEF49360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 454
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 16/150 (10%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
E+L AF + N + ST+ C I CSSL L G++ H L + D+ + + +
Sbjct: 65 ESLRAF-YSMRKLNLKPNRSTFPCAIKACSSLLDLHWGKQTHQQALVFGFESDLFVSSAL 123
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM--- 141
++MY KCG L DAR++ DE+ RN++ W ++I G +A+EA+ LF +
Sbjct: 124 VDMYSKCGRLSDARILFDEITHRNIV------IWTSMITGYIQNDHAHEALLLFKQFLIE 177
Query: 142 ------RDRELIPDGLTVRSLLCACTSPSN 165
E++ D + + S+L AC+ S
Sbjct: 178 ESERNEEKDEVLMDSVAMVSVLSACSRISG 207
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L +EA F + + T + L+ C+ +LQ G+ +HD ++ +V++
Sbjct: 272 GLSSEAFEVFHGMIKYGYVKYNAVTLSTLLLACAHSGALQTGKCIHDQVIRMGLDDNVIV 331
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+++MY KCG ++ AR D M ++NV SW A++AG A EA+++F +
Sbjct: 332 GTSLIDMYCKCGRVQMARKTFDGMKEKNV------KSWTAMVAGYGMHGCAREALNIFYK 385
Query: 141 MRDRELIPDGLTVRSLLCACTSPS 164
M + P+ +T S+L AC+
Sbjct: 386 MIRSGVKPNYITFVSVLAACSHAG 409
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++S CS + + + VH ++ DV ++N +L+ Y KCG + +R V DE+ +++
Sbjct: 198 VLSACSRISGKGMTKGVHGFVVKKGLDEDVGIENTLLDAYAKCGEVGVSRQVFDEIVEKD 257
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP-DGLTVRSLLCACT 161
I SWN++IA A ++EA +F M + + +T+ +LL AC
Sbjct: 258 AI------SWNSMIAVYAQNGLSSEAFEVFHGMIKYGYVKYNAVTLSTLLLACA 305
>gi|224122234|ref|XP_002318784.1| predicted protein [Populus trichocarpa]
gi|222859457|gb|EEE97004.1| predicted protein [Populus trichocarpa]
Length = 511
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 81/139 (58%), Gaps = 7/139 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ EAL F F+ N +N T+A +I+ C+ L +L+ + VH+ ++ + + + +L +
Sbjct: 123 FEEALRLFRFM-NKSNVEPDKYTFASVINGCAKLGALKHAQWVHELLIEKRIELNFILSS 181
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG ++ A+ + D + + NV WNA+I+G+A A +A+ +F++M
Sbjct: 182 ALIDMYSKCGKIQTAKEIFDGVQRNNV------CIWNAMISGLAVHGLALDAIKVFTKME 235
Query: 143 DRELIPDGLTVRSLLCACT 161
++PD +T +L AC+
Sbjct: 236 VENVLPDAITFLGILTACS 254
Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T+ +++ CS ++ GRK D + S S QP + ++++ G+ G LE+A +
Sbjct: 245 TFLGILTACSHCGLVKEGRKYFDLMRSRYSVQPHIEHYGAMVDLLGRAGLLEEAFAMIKS 304
Query: 104 MPQRNVIESPDLASWNAIIAGVAS---PSNANEAMSLFSEMRDRELI 147
MP PD+ W A++ + P AM+ S +R + +
Sbjct: 305 MPME-----PDVVIWRALLGACRTYKKPELGEAAMANISRLRSGDYV 346
Score = 39.3 bits (90), Expect = 0.55, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D+V N I++ + + A++V ++M R+V+ +WN +I G + EA+
Sbjct: 75 DLVELNLIIDKLMRTENYRVAKMVFNKMRARDVV------TWNTMIGGYVRKARFEEALR 128
Query: 137 LFSEMRDRELIPDGLTVRSLLCAC 160
LF M + PD T S++ C
Sbjct: 129 LFRFMNKSNVEPDKYTFASVINGC 152
>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
Length = 813
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 7/137 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EA + F +Q N +T LI CS L +LQ GR H ++ + + N +
Sbjct: 424 EAFLVFKKMQA-CNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNAL 482
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MY KCG ++ +R V + MP R D+ SWN +IAG EA +LF EM +
Sbjct: 483 IDMYAKCGRIDLSRQVFNMMPSR------DIVSWNTMIAGYGIHGLGKEATALFLEMNNL 536
Query: 145 ELIPDGLTVRSLLCACT 161
PDG+T LL AC+
Sbjct: 537 GFPPDGVTFICLLSACS 553
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
+ P++ A + C+SL L++G ++H + S D+ N +L+MY K G ++ A +
Sbjct: 338 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIAL 397
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
DEM + D S++A+++G A EA +F +M+ + PD T+ SL+ AC
Sbjct: 398 FDEMAVK------DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPAC 451
Query: 161 T 161
+
Sbjct: 452 S 452
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
R+ P+ T+ + CS+L GR +H H + + Q D+ + +L+MY KC L DA
Sbjct: 120 RVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDA 179
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS--LFSEMRDRELIPDGLTVRS 155
+ MP R DL +WNA++AG A + A++ L +M+ L P+ T+ +
Sbjct: 180 AHIFATMPAR------DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVA 233
Query: 156 LL 157
LL
Sbjct: 234 LL 235
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 48/154 (31%), Positives = 70/154 (45%), Gaps = 20/154 (12%)
Query: 22 LYNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHIL--------- 70
+Y+ A+ +Q + R+RP ST L+ + +L G VH + +
Sbjct: 206 MYHHAVAHLLSMQMQMH-RLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRN 264
Query: 71 -SSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPS 129
SK V+L +L+MY KCGSL AR V D MP RN + +W+A+I G S
Sbjct: 265 SKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV------TWSALIGGFVLCS 318
Query: 130 NANEAMSLFSEMRDREL-IPDGLTVRSLLCACTS 162
+A LF M + L ++ S L AC S
Sbjct: 319 RMTQAFLLFKAMLAQGLCFLSPTSIASALRACAS 352
>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 693
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 75/138 (54%), Gaps = 12/138 (8%)
Query: 31 DFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY 88
D L+ N ++P +Y + ++S+C+ L SL G+ VH ++ +++ + +++MY
Sbjct: 312 DMLRRN----VKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMY 367
Query: 89 GKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP 148
KCG DARV+ + MP RNVI +WNA+I G A EA++L+ M+ P
Sbjct: 368 CKCGVTLDARVIFETMPIRNVI------TWNAMILGYAQNGQVLEALTLYERMQQENFKP 421
Query: 149 DGLTVRSLLCACTSPSNV 166
D +T +L AC + V
Sbjct: 422 DNITFVGVLSACINADMV 439
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 70/121 (57%), Gaps = 8/121 (6%)
Query: 41 IRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+P+ Y+ + + CS L L+ G+++H I+ + + ++N + +MY KCG ++ AR
Sbjct: 151 FQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKAR 210
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
++ D M +NV+ SWN +I+G N NE + LF+EM+ L PD +TV ++L
Sbjct: 211 LLFDGMIDKNVV------SWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLN 264
Query: 159 A 159
A
Sbjct: 265 A 265
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 72 SKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNA 131
S +PD+V + +LN Y +CG ++DAR + ++P+++ I W +I G A
Sbjct: 250 SGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEI------CWTTMIVGYAQNGRE 303
Query: 132 NEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
+A LF +M R + PD T+ S++ +C +++ +
Sbjct: 304 EDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYH 340
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 20/130 (15%)
Query: 17 QPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
Q I LY+ L +FD Y L+ C+ +++ H+ + QP
Sbjct: 9 QAIDLLYSHGLASFD-------------DYTRLVLHCARANDFIQAKRLQSHMELNLFQP 55
Query: 77 -DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
D + N +L++Y K G L DA+ V D M +R D+ SWN +++ A
Sbjct: 56 KDSFIHNQLLHLYAKFGKLSDAQNVFDNMTKR------DVYSWNTLLSAYAKMGMVENLH 109
Query: 136 SLFSEMRDRE 145
+F +M R+
Sbjct: 110 VVFDQMPYRD 119
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+ + ++ DV N +L+ Y K G +E+ VV D+MP R D S+N +IA AS
Sbjct: 80 VFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPYR------DSVSYNTLIACFASN 133
Query: 129 SNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++ +A+ + M++ P + + L AC+
Sbjct: 134 GHSGKALKVLVRMQEDGFQPTQYSHVNALQACS 166
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 7/138 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
NEAL FD ++ + +T L+S C+ L +L G +H +I ++ + + ++
Sbjct: 371 NEALALFDQMRA-VGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTA 429
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+++MY KCG + A V N +ES D+ +WN IIAG+A N EA LF EM++
Sbjct: 430 LVDMYAKCGKISLATQVF------NAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKE 483
Query: 144 RELIPDGLTVRSLLCACT 161
+ P+ +T ++L AC+
Sbjct: 484 AGVEPNDITFVAILSACS 501
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 25/109 (22%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI-----------------------ESP 113
DV+ N ++N Y G +++A+ + DEMP+RN++ E P
Sbjct: 291 DVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMP 350
Query: 114 --DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
D+ SWN+++A A NEA++LF +MR + P TV SLL AC
Sbjct: 351 CRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSAC 399
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 74 SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
S DVV N +++ Y K + AR+V D M R+VI SWN +I G A +E
Sbjct: 257 SARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVI------SWNTMINGYAIVGKIDE 310
Query: 134 AMSLFSEMRDRELI 147
A LF EM +R L+
Sbjct: 311 AKRLFDEMPERNLV 324
>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Glycine max]
Length = 615
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 6/113 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY L+ C++L S+Q G +H H+L Q D +Q +++MY KC + AR V DEM
Sbjct: 48 TYPLLLKACANLPSIQHGTMLHGHVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDEM 107
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
PQR+V+ SWNA+++ + S+ ++A+SL EM P T S+L
Sbjct: 108 PQRSVV------SWNAMVSAYSRRSSMDQALSLLKEMWVLGFEPTASTFVSIL 154
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 73/136 (53%), Gaps = 9/136 (6%)
Query: 29 AFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A D + IRP +T A ++S C+ L SL +G+++ ++I + + D +Q +++
Sbjct: 337 ALDLFRRMIRTDIRPNGATLATVVSACADLGSLSIGQEIEEYIFLNGLESDQQVQTSLIH 396
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE- 145
MY KCGS+ AR V + + + DL W ++I A NEA+SLF +M E
Sbjct: 397 MYSKCGSIVKAREVFERVTDK------DLTVWTSMINSYAIHGMGNEAISLFHKMTTAEG 450
Query: 146 LIPDGLTVRSLLCACT 161
++PD + S+ AC+
Sbjct: 451 IMPDAIVYTSVFLACS 466
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
LIS C +R L L VH +L ++N ++ MY KCG+L AR + D + +++
Sbjct: 258 LISGCIQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKCGNLTSARRIFDLIIEKS 317
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
++ SW ++IAG + EA+ LF M ++ P+G T+ +++ AC
Sbjct: 318 ML------SWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVVSAC 363
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQ---LGRKVHDHILS-SKSQPDVVLQNYILNMYGKCGS 93
F ST+ ++S S+L S + LG+ +H ++ +V L N ++ MY +
Sbjct: 142 GFEPTASTFVSILSGYSNLDSFEFHLLGKSIHCCLIKLGIVYLEVSLANSLMGMYVQFCL 201
Query: 94 LEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTV 153
+++AR V D M ++++I SW +I G +A EA LF +M+ + + D +
Sbjct: 202 MDEARKVFDLMDEKSII------SWTTMIGGYVKIGHAVEAYGLFYQMQHQSVGIDFVVF 255
Query: 154 RSLLCACTSPSNVL 167
+L+ C ++L
Sbjct: 256 LNLISGCIQVRDLL 269
>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
Length = 606
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 75/139 (53%), Gaps = 11/139 (7%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
EALV F +Q ++P+ T ++S C+ L +L+LGR VHD++ V +
Sbjct: 217 EALVLFREMQGKG---LKPTSVTVISVLSACALLGALELGRWVHDYVRKIGLGSLVKVST 273
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCGSLEDA V M ES D +W+ +I A+ EA+SLF EM+
Sbjct: 274 ALIDMYAKCGSLEDAIDVFQGM------ESKDRQAWSVMIVAYANHGYGREAISLFEEMK 327
Query: 143 DRELIPDGLTVRSLLCACT 161
+ PD +T +L AC+
Sbjct: 328 KEGMKPDDITFLGVLYACS 346
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 41 IRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ P TY L+ C++ R+ + GR+ H + + ++ ++NMY +CG AR
Sbjct: 129 VAPDTYTFVSLLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAAR 188
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V+ V+ S+NA+IA S EA+ LF EM+ + L P +TV S+L
Sbjct: 189 VMFGGTDGGCVV------SYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLS 242
Query: 159 AC 160
AC
Sbjct: 243 AC 244
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 86/165 (52%), Gaps = 24/165 (14%)
Query: 12 TFYNSQPIQNL--YNEALVAFDFLQNNTN------FRIRPS--------TYACLISTCSS 55
+ ++ +QNL +N + A++ QNN FR + T +IS C+S
Sbjct: 285 SLFDGMVVQNLVSWNAMIAAYE--QNNAGANAVKLFRRMQAEKVDFDYITMVSVISACAS 342
Query: 56 LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDL 115
L +L GR +H+ + + +V + N +++MY KCG+++ AR V + +P R+V+
Sbjct: 343 LGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVV----- 397
Query: 116 ASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
SW ++I AS + +A+ LFS M+D + P+ T ++ AC
Sbjct: 398 -SWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTAC 441
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ C+ L L LG+ +H + + PDV L N ++ +YGKCG++E AR + D M
Sbjct: 231 TLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGM 290
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+N L SWNA+IA + A+ LF M+ ++ D +T+ S++ AC S
Sbjct: 291 VVQN------LVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACAS 342
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ +C+ L +L+ G++VH +I+ DV +Q+ ++ MY + G +V EM
Sbjct: 130 TFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEM 189
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
RN++ SW A+IAG E + +F EM P+ +T+ S+L AC
Sbjct: 190 VVRNIV------SWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAG 241
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 28 VAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ-NYILN 86
V FDF TN+ R Y L++ CSSL L ++H ++++ +++L I+
Sbjct: 19 VLFDF---RTNYHSRSFNY--LLNCCSSLPDLS---RIHALVVTNGCGQNLLLSTKLIIT 70
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
+++ AR + D+MP+R+V WN +I G A EA++L+S M L
Sbjct: 71 ACCLAPTMDYARKMFDQMPKRDVF------LWNTLIRGYADAGPCEEALALYSNMHGAGL 124
Query: 147 IPDGLTVRSLLCACT 161
PD T ++ +C
Sbjct: 125 FPDNYTFPFVVRSCA 139
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 76/135 (56%), Gaps = 7/135 (5%)
Query: 28 VAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHIL-SSKSQPDVVLQNYILN 86
V F N + T ++S+C+ L L+LGRK+H +I+ +S DV + N +++
Sbjct: 211 VGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVD 270
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG AR V EMP +NV+ SWN++I+G+A E++ +F +M+ +
Sbjct: 271 MYLKCGDANFARKVFQEMPVKNVV------SWNSMISGLAQKGQFKESLYMFRKMQRLGV 324
Query: 147 IPDGLTVRSLLCACT 161
PD +T+ ++L +C
Sbjct: 325 KPDDVTLVAVLNSCA 339
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 78/141 (55%), Gaps = 11/141 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+ E+L F +Q ++P T ++++C++L L+LG+ VH ++ ++ + D +
Sbjct: 309 FKESLYMFRKMQR---LGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFI 365
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MY KCGS++ A V M ++ D+ S+ A+I G+A +A+ LFSE
Sbjct: 366 GNALVDMYAKCGSIDQACWVFQAMNRK------DVYSYTAMIVGLAMHGQGGKALDLFSE 419
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M + PD +T +L AC+
Sbjct: 420 MPKMGIEPDEVTFVGVLTACS 440
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 8/123 (6%)
Query: 41 IRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I P Y ++ C+ R+++ G +VH + DV + N ++ MY C + AR
Sbjct: 121 IVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSAR 180
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V D PQR DL SW +I G A E + LF EM L DG+T+ +L
Sbjct: 181 KVFDTSPQR------DLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLS 234
Query: 159 ACT 161
+C
Sbjct: 235 SCA 237
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG-SLE- 95
+F ++ + TC S++ L +++H I+ + PD L + C SL
Sbjct: 17 DFNPHKLSFLSTLQTCKSIKGL---KQIHASIIKTMPSPDAQL-TISTRLSALCAQSLPI 72
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNAN-EAMSLFSEMRDRELIPDGLTVR 154
D R + Q + +P+L +NAII G+A+ +N + E + ++ +M + ++PD T+
Sbjct: 73 DPRYALSLLAQ---LRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIP 129
Query: 155 SLLCACTSPSNV 166
+L AC V
Sbjct: 130 FVLKACAESRAV 141
>gi|302817366|ref|XP_002990359.1| hypothetical protein SELMODRAFT_131534 [Selaginella moellendorffii]
gi|300141921|gb|EFJ08628.1| hypothetical protein SELMODRAFT_131534 [Selaginella moellendorffii]
Length = 459
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + L+ C+SL SL GR++H I+ + D VL N ++ MY KCGSL DA V
Sbjct: 233 TLSILLGACASLESLDRGREIHATIIDRGMESDTVLLNSLVRMYSKCGSLLDAMRVFQSA 292
Query: 105 PQ---RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
Q R S D +WNAII A S N ++ LF EM P+G+T+ ++L AC
Sbjct: 293 LQDRDRGGGGSIDAITWNAIIVASARSSAGNLSIHLFHEMLLHGFDPNGITLTAVLTACG 352
Query: 162 SPSNV 166
+
Sbjct: 353 HAGMI 357
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
Y ++ CSSL L GR +H +S DV+L I+NMY KCG + +A++V D M
Sbjct: 127 VYTIALAACSSLGDLASGRAIHARC-HDRSIRDVILDTAIINMYAKCGCVGEAKIVFDSM 185
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD------GLTVRSLLC 158
QR+ I +WNA+IA A + EA+ L+ EM + L P T+ LL
Sbjct: 186 RQRDSI------AWNAMIAAFAQNGHLREAILLYLEMTAQGLDPSEATFTTAFTLSILLG 239
Query: 159 ACTS 162
AC S
Sbjct: 240 ACAS 243
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 18/139 (12%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQ-PDVV-----LQNYILNMYGKCGS 93
R+ +TYA L+ C + ++L GR++H HIL++K + P L N +L +Y +CG
Sbjct: 9 RVSAATYASLLKQCIARKALGHGRQIHAHILAAKEKDPRAAPTAPFLGNLLLQLYARCGD 68
Query: 94 LEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE------LI 147
L+ AR + D + RN L SW ++ G + A+ L+ + RE +
Sbjct: 69 LDRARSIFDGLAHRN------LFSWTTMMGGYVQRGRFDRALDLYHCLEKREEPSYRSIE 122
Query: 148 PDGLTVRSLLCACTSPSNV 166
PD L AC+S ++
Sbjct: 123 PDAFVYTIALAACSSLGDL 141
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 6/123 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T +++ C+ L LG+KVH I + + V + N +++MY KCG ++ A + +E
Sbjct: 318 GTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNE 377
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
M R DL SWN ++ G+A + +A+ LFS+M+ PD +T+ ++LCACT
Sbjct: 378 MSMR------DLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHA 431
Query: 164 SNV 166
V
Sbjct: 432 GFV 434
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 7/93 (7%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+VV + +++ Y K G +E AR++ D+MP +N L +W II+G A A EA +
Sbjct: 250 NVVSWSTMVSGYCKTGDMEMARMLFDKMPFKN------LVTWTIIISGFAEKGLAKEATT 303
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPSNVLYL 169
L+++M L PD T+ S+L AC + S +L L
Sbjct: 304 LYNQMEAAGLKPDDGTLISILAAC-AESGLLVL 335
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 10/141 (7%)
Query: 7 TQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVH 66
T +R NSQ ++ A F +Q N F TY L+ C+ L + +H
Sbjct: 91 TLIRAHVQNSQSLK-----AFATFFDMQKNGLFA-DNFTYPFLLKACNGKGWLPTVQMIH 144
Query: 67 DHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVA 126
H+ D+ + N +++ Y KCG L V+ M + DL SWN++I G+
Sbjct: 145 CHVEKYGFFGDLFVPNSLIDSYSKCGLLG----VNYAMKLFMEMGEKDLVSWNSMIGGLV 200
Query: 127 SPSNANEAMSLFSEMRDRELI 147
+ A LF EM +R+ +
Sbjct: 201 KAGDLGRARKLFDEMAERDAV 221
>gi|296083841|emb|CBI24229.3| unnamed protein product [Vitis vinifera]
Length = 547
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 74/123 (60%), Gaps = 8/123 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
IRP+ T + ++ CS +LQLG+ +H +I+ ++ + D+ + + ++++Y KCG++ A
Sbjct: 208 IRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAE 267
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V MP+ NV+ SWN +I+G + EA+ +F++MR + PD +T S+L
Sbjct: 268 NVFQNMPKTNVV------SWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLP 321
Query: 159 ACT 161
AC+
Sbjct: 322 ACS 324
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 74/130 (56%), Gaps = 6/130 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
+ F+ T +IS+C+ L L+ G+++H ++ S D + + +++MYGKCG LE
Sbjct: 105 SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEM 164
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
A+ V +++ ++NV+ SWN++IAG + ++ + LF M + + P T+ S+
Sbjct: 165 AKEVFEQIQRKNVV------SWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSI 218
Query: 157 LCACTSPSNV 166
L AC+ N+
Sbjct: 219 LMACSRSVNL 228
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 13/120 (10%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+ TC + L+ G+ +H I+S Q ++ L ++N+Y C + A++V
Sbjct: 9 LLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVF------Q 62
Query: 109 VIESP-DLASWNAIIAGVAS------PSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
IE+P D+ WN ++A +A+ LF EM+ PD +T+ +++ +C
Sbjct: 63 TIENPLDITLWNGLMAACTKNFIFIEGLEPEKALELFEEMKVSGFKPDSVTLTTVISSCA 122
>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930 [Vitis vinifera]
gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
Length = 743
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
QN ++E V F T +IS+C++L SL+ G + H L S +
Sbjct: 348 QNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFIT 407
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ N ++ +YGKCGS E++ + EM R D SW A++AG A ANE + LF
Sbjct: 408 VSNALITLYGKCGSTENSHRLFTEMNIR------DEVSWTALLAGYAQFGKANETIGLFE 461
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
M L PDG+T +L AC+
Sbjct: 462 RMLAHGLKPDGVTFIGVLSACS 483
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 70/125 (56%), Gaps = 6/125 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
F + T+ +++ C SL +L G+++H +++ + + +V + + +++MY KC S++
Sbjct: 264 AGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKS 323
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
A V MPQ+NVI SW A++ G + EA+ +F EM+ + PD T+ S+
Sbjct: 324 AETVFKRMPQKNVI------SWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSV 377
Query: 157 LCACT 161
+ +C
Sbjct: 378 ISSCA 382
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 25/164 (15%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
++A+ + + + + T++ ++ CS R + LGR+++ IL DV + +
Sbjct: 119 SDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSP 178
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVI-------------------------ESPDLASW 118
+++MY K G + DA+ DEMP+RNV+ + D SW
Sbjct: 179 LVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISW 238
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+I G+ EA+ +F EMR D T S+L AC S
Sbjct: 239 TIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGS 282
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
YA L+ C ++ +K+H IL + QP+ L N ++ Y K G+L A V D +P
Sbjct: 8 YASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIP 67
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTV 153
Q P+L SWN I++ + ++ +F+ M R+ + L +
Sbjct: 68 Q------PNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAI 109
>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like, partial [Vitis vinifera]
Length = 825
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 7/142 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
+ Y E L F+ ++ + +T+A L+ +S+ SL LG+++H I+ S +V
Sbjct: 430 KGFYEEGLQLFNKMRQ-ASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVF 488
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ +L++Y KCGS++DA EMP RN++ SWNA+I+ A A + F
Sbjct: 489 SGSALLDVYAKCGSIKDAVQTFQEMPDRNIV------SWNAMISAYAQNGEAEATLKSFK 542
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
EM L PD ++ +L AC+
Sbjct: 543 EMVLSGLQPDSVSFLGVLSACS 564
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 29 AFDFLQN--NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AFD + T F + +A ++S S+ ++GR++H + + + ++++ N +++
Sbjct: 335 AFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVD 394
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG E+A ++ + R+ + W A+I+ E + LF++MR +
Sbjct: 395 MYAKCGKFEEAEMIFTNLTHRSAV------PWTAMISAYVQKGFYEEGLQLFNKMRQASV 448
Query: 147 IPDGLTVRSLLCACTS 162
I D T SLL A S
Sbjct: 449 IADQATFASLLRASAS 464
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 36 NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
N+ + T+A ++ L + LG+++H ++ + +V + N +L+ Y K S+
Sbjct: 243 NSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVI 302
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR----DRELIP 148
DAR + DEMP++ D S+N II+G A A LF E++ DR+ P
Sbjct: 303 DARKLFDEMPEQ------DGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFP 353
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+S C+ +V I+ +++ N +++ Y K L+ A + EM
Sbjct: 151 TFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEM 210
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
P+ D S+NA+I G + +A++LF EM++ L P T ++LCA
Sbjct: 211 PE------IDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCA 259
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
I+ + PD N+ + + K G L AR + ++MP +N + + N +I+G
Sbjct: 43 IVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVST------NMMISGYVKS 96
Query: 129 SNANEAMSLFSEMRDRELI 147
N EA LF M +R +
Sbjct: 97 GNLGEARKLFDGMVERTAV 115
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 11/152 (7%)
Query: 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHI 69
T N Y EA+ F + I P T + +IS C+ L L++G++VH +
Sbjct: 1009 TMINGYSRNKRYREAIAVFYKMMEEG---IIPDEVTMSTVISACAHLGVLEIGKEVHMYT 1065
Query: 70 LSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPS 129
+ + DV + + +++MY KCGSLE A +V +P++N L WN+II G+A+
Sbjct: 1066 VQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKN------LFCWNSIIEGLAAHG 1119
Query: 130 NANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
A EA+ +F++M + P+ +T S+ ACT
Sbjct: 1120 FAQEALKMFAKMEMESVKPNTVTFVSVFTACT 1151
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N +++ Y + G+LE A + ++MP +++I SW +I G + EA+++F +M
Sbjct: 977 NCLIDGYTRLGNLELAESLFNQMPVKDII------SWTTMINGYSRNKRYREAIAVFYKM 1030
Query: 142 RDRELIPDGLTVRSLLCAC 160
+ +IPD +T+ +++ AC
Sbjct: 1031 MEEGIIPDEVTMSTVISAC 1049
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 25/132 (18%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
+ PS+Y +S + G + HI V +Q ++ Y G + +AR V
Sbjct: 874 VSPSSYTYSSLVQASAFASGFGESLQAHIWKFGFGFHVQIQTTLIGFYSASGRIREARKV 933
Query: 101 SDEMPQR-------------------------NVIESPDLASWNAIIAGVASPSNANEAM 135
DEMP+R N + + A+WN +I G N A
Sbjct: 934 FDEMPERDDVTWTTMVSAYRQVLDMDSANSLANQMPEKNEATWNCLIDGYTRLGNLELAE 993
Query: 136 SLFSEMRDRELI 147
SLF++M +++I
Sbjct: 994 SLFNQMPVKDII 1005
>gi|297605437|ref|NP_001057211.2| Os06g0228900 [Oryza sativa Japonica Group]
gi|255676854|dbj|BAF19125.2| Os06g0228900 [Oryza sativa Japonica Group]
Length = 695
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ +++ C+S+ L LG ++H ++ PD + N ++ MY +CG+L DA + +M
Sbjct: 369 TFSSVLAACASIPMLGLGAQIH-QLVEKSFVPDTAISNALITMYSRCGALNDAEAIFKQM 427
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ DL SWNA+I A +A+ LF EMR +++P +T SLL AC
Sbjct: 428 HTKK-----DLVSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACV 479
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
PD V N I+ + + G E AR D MP+R I SWN +I+G N ++
Sbjct: 299 PDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTI------SWNTMISGYEKNGNYISSV 352
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACTS 162
LFS+M + IPD T S+L AC S
Sbjct: 353 KLFSKMLEVGEIPDRHTFSSVLAACAS 379
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 12/81 (14%)
Query: 67 DHILSSKS------QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNA 120
DH+ +++ Q DVV N +L Y + G +++AR + DEMPQRN ASWN
Sbjct: 79 DHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMPQRNA------ASWNT 132
Query: 121 IIAGVASPSNANEAMSLFSEM 141
++ G + +A+ +F M
Sbjct: 133 MVTGFFAAGQVVKALDVFDAM 153
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
G+ H+ + + +VV N ++ Y K G + AR + +EMP + DL SWN +
Sbjct: 223 GQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDK------DLVSWNTM 276
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
I+G S+ E+ LF EM D + + L ++ +
Sbjct: 277 ISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFM 312
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 77 DVVLQNYILNMYGKC---GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
D V N +L Y L AR + DEMPQR+V+ +WN ++ A +E
Sbjct: 61 DAVSWNTLLAAYSASPHPDHLAAARRLFDEMPQRDVV------TWNTLLGAYARRGLMDE 114
Query: 134 AMSLFSEMRDR 144
A LF EM R
Sbjct: 115 ARRLFDEMPQR 125
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV- 79
+ A A + ++ P+ T+ L+S C + + GR V D ++ + +V
Sbjct: 446 HGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVH---EYGIVA 502
Query: 80 -LQNY--ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN 130
+++Y ++N+ G+ G L+DA V + MP +PD + W A + + N
Sbjct: 503 RIEHYAALVNLIGRHGQLDDALEVINSMPM-----APDRSVWGAFLGACTAKKN 551
>gi|383130014|gb|AFG45729.1| Pinus taeda anonymous locus 0_12933_01 genomic sequence
Length = 147
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 6/123 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
T+ ++PSTYA L+ +C+ +L G+ +H HI D L N ++ MY +C +L D
Sbjct: 31 TSIPVKPSTYAYLLQSCTKKNALPEGKLIHAHINERAPATDTFLHNSLIMMYVRCRNLTD 90
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
AR V D MP+R D SWN +IA A E + +F +M+ + P+ T S+
Sbjct: 91 ARKVFDRMPER------DDFSWNVMIAAYTKHGIAEEGLRMFYQMQRTGIEPNSFTFVSV 144
Query: 157 LCA 159
L A
Sbjct: 145 LPA 147
>gi|347954532|gb|AEP33766.1| organelle transcript processing 82, partial [Lepidium virginicum]
Length = 464
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 80/157 (50%), Gaps = 19/157 (12%)
Query: 12 TFYNSQPIQNLYNEALVAF-DFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDH 68
T NLY EAL F + L++ + P+ T ++S C+ L ++ +GR +H +
Sbjct: 276 TLIGGHTHMNLYKEALFLFQEMLRSGES----PNDVTMLSVLSACAHLGAIDIGRWIHVY 331
Query: 69 ILSSKSQPDVV----LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124
I K V L+ +++MY KCG +E A V D M R+ L+SWNA+I G
Sbjct: 332 I--DKRLKGVTNSSSLRTSLIDMYAKCGDIEAASQVFDSMLARS------LSSWNAMIFG 383
Query: 125 VASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
A AN A LFS+MR + PD +T LL AC+
Sbjct: 384 FAMHGKANAAFDLFSKMRKSGIEPDDITFVGLLSACS 420
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 27/151 (17%)
Query: 43 PSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
P++Y+ L+ +C+ ++ + G+++H H++ D+ + +++MY + G LEDA V
Sbjct: 71 PNSYSFPFLLKSCAKSKAFREGQQIHGHVVKLGYDLDMYVHTSLISMYAQNGRLEDAHKV 130
Query: 101 SDEMPQRNVIES-------------------------PDLASWNAIIAGVASPSNANEAM 135
D R+V+ D+ SWNA+I+G N EA+
Sbjct: 131 FDRSSHRHVVSYTALITGYASRGYTKSARKLFDEILVKDIVSWNAMISGYVETFNYKEAL 190
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
L+ EM + PD T+ +++ AC SN+
Sbjct: 191 ELYKEMVKTNVKPDESTMVTVVSACAQSSNI 221
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 7/139 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y EAL + + TN + ST ++S C+ +++LGR+VH I ++ + N
Sbjct: 186 YKEALELYKEMVK-TNVKPDESTMVTVVSACAQSSNIELGRQVHSLIEDHGFGSNLKVVN 244
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG +E A + + ++ I SWN +I G + EA+ LF EM
Sbjct: 245 ALMDMYSKCGEMETACRLFQGLVNKDAI------SWNTLIGGHTHMNLYKEALFLFQEML 298
Query: 143 DRELIPDGLTVRSLLCACT 161
P+ +T+ S+L AC
Sbjct: 299 RSGESPNDVTMLSVLSACA 317
>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Vitis vinifera]
Length = 629
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P T ++S+C+ L + GR+V I S + L+N ++NMY +CG+L AR + D
Sbjct: 260 PVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFD 319
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
M ++NVI SW AIIAG A+ LF EM + +PDG S+L AC+
Sbjct: 320 GMTEKNVI------SWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACS 372
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
LI C+ L G +H + D+ + N +L MY +CGS++ AR + D MP++
Sbjct: 165 LIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKG 224
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+I +WNA+I+G A A + L+ +M ++PD +T+ +L +C
Sbjct: 225 LI------TWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCA 271
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 2 IRNLKTQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQL 61
+R L Q F Q NLY + L + D + F T+ +C+SL
Sbjct: 28 LRELARQRHF-----QEALNLYCQMLASGD---SPNAF-----TFPFAFKSCASLSLPLA 74
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE-MPQRNVIESPDLASWNA 120
G ++H H++ + +P+ +Q +++MY KC ++ AR V DE RN+ +NA
Sbjct: 75 GSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLA-----VCYNA 129
Query: 121 IIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
+IAG + S ++A+ LF +MR + + +T+ L+ C P ++ +
Sbjct: 130 LIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGF 177
>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g03380, mitochondrial; Flags: Precursor
gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 689
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 7/146 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+L E LV F+ ++ N N TY LI C+ L +L G+ H ++ S + L
Sbjct: 221 DLCEEGLVLFNRMREN-NVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCL 279
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+L+MY KCG + +AR V +E DL W A+I G + NEA+SLF +
Sbjct: 280 VTSLLDMYVKCGDISNARRVFNEHSH------VDLVMWTAMIVGYTHNGSVNEALSLFQK 333
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M+ E+ P+ +T+ S+L C N+
Sbjct: 334 MKGVEIKPNCVTIASVLSGCGLIENL 359
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 14/142 (9%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSK-SQPDVVL 80
NEAL F Q I+P+ T A ++S C + +L+LGR VH LS K D +
Sbjct: 325 NEALSLF---QKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHG--LSIKVGIWDTNV 379
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MY KC DA+ V + ++ D+ +WN+II+G + + +EA+ LF
Sbjct: 380 ANALVHMYAKCYQNRDAKYVFEMESEK------DIVAWNSIISGFSQNGSIHEALFLFHR 433
Query: 141 MRDRELIPDGLTVRSLLCACTS 162
M + P+G+TV SL AC S
Sbjct: 434 MNSESVTPNGVTVASLFSACAS 455
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 6 KTQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKV 65
K LR N + + E + +D L + FR ++ + C+ L+ L G+K+
Sbjct: 111 KVMLRCYCLNKESV-----EVVKLYDLLMKH-GFRYDDIVFSKALKACTELQDLDNGKKI 164
Query: 66 HDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGV 125
H ++ S +VVL +L+MY KCG ++ A V +++ RNV+ W ++IAG
Sbjct: 165 HCQLVKVPSFDNVVLTG-LLDMYAKCGEIKSAHKVFNDITLRNVV------CWTSMIAGY 217
Query: 126 ASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
E + LF+ MR+ ++ + T +L+ ACT S
Sbjct: 218 VKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLS 256
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 9/145 (6%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDH--ILSSKSQPDVVLQ 81
+EAL F + N+ + T A L S C+SL SL +G +H + L + V +
Sbjct: 425 HEALFLFHRM-NSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVG 483
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+L+ Y KCG + AR++ D + ++N I +W+A+I G + ++ LF EM
Sbjct: 484 TALLDFYAKCGDPQSARLIFDTIEEKNTI------TWSAMIGGYGKQGDTIGSLELFEEM 537
Query: 142 RDRELIPDGLTVRSLLCACTSPSNV 166
++ P+ T S+L AC V
Sbjct: 538 LKKQQKPNESTFTSILSACGHTGMV 562
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+S C+++ SL R+ H + + D+ + ++++YG G +DAR+V D++P+
Sbjct: 50 LLSKCTNIDSL---RQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPE-- 104
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
PD W ++ + E + L+ + D + L ACT
Sbjct: 105 ----PDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACT 153
>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
Length = 695
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 7/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C+ + G++VH I+ DV + N ++++YG CG L+ AR V DEM
Sbjct: 210 TFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEM 269
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P+R+ L SWN++I + + A+ LF EM+ R PDG T++S+L AC
Sbjct: 270 PERS------LVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAG 320
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 73/143 (51%), Gaps = 13/143 (9%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS---KSQPDVV 79
Y+ AL F +Q + F T ++S C+ L SL LG H +L DV+
Sbjct: 290 YDSALQLFREMQRS--FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVL 347
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
++N ++ MY KCGSL A V M +R DLASWNA+I G A+ A EAM+ F
Sbjct: 348 VKNSLIEMYCKCGSLRMAEQVFQGMQKR------DLASWNAMILGFATHGRAEEAMNFFD 401
Query: 140 EMRDRE--LIPDGLTVRSLLCAC 160
M D+ + P+ +T LL AC
Sbjct: 402 RMVDKRENVRPNSVTFVGLLIAC 424
>gi|51535392|dbj|BAD37262.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|51535558|dbj|BAD37476.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 908
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ +++ C+S+ L LG ++H ++ PD + N ++ MY +CG+L DA + +M
Sbjct: 405 TFSSVLAACASIPMLGLGAQIH-QLVEKSFVPDTAISNALITMYSRCGALNDAEAIFKQM 463
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ DL SWNA+I A +A+ LF EMR +++P +T SLL AC
Sbjct: 464 HTKK-----DLVSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACV 515
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
PD V N I+ + + G E AR D MP+R I SWN +I+G N ++
Sbjct: 335 PDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTI------SWNTMISGYEKNGNYISSV 388
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACTS 162
LFS+M + IPD T S+L AC S
Sbjct: 389 KLFSKMLEVGEIPDRHTFSSVLAACAS 415
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 12/81 (14%)
Query: 67 DHILSSKS------QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNA 120
DH+ +++ Q DVV N +L Y + G +++AR + DEMPQRN ASWN
Sbjct: 115 DHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMPQRNA------ASWNT 168
Query: 121 IIAGVASPSNANEAMSLFSEM 141
++ G + +A+ +F M
Sbjct: 169 MVTGFFAAGQVVKALDVFDAM 189
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
G+ H+ + + +VV N ++ Y K G + AR + +EMP + DL SWN +
Sbjct: 259 GQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDK------DLVSWNTM 312
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
I+G S+ E+ LF EM D + + L ++ +
Sbjct: 313 ISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFM 348
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 77 DVVLQNYILNMYGKC---GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
D V N +L Y L AR + DEMPQR+V+ +WN ++ A +E
Sbjct: 97 DAVSWNTLLAAYSASPHPDHLAAARRLFDEMPQRDVV------TWNTLLGAYARRGLMDE 150
Query: 134 AMSLFSEMRDR 144
A LF EM R
Sbjct: 151 ARRLFDEMPQR 161
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 14/114 (12%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV- 79
+ A A + ++ P+ T+ L+S C + + GR V D ++ +V
Sbjct: 482 HGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYG---IVA 538
Query: 80 -LQNY--ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN 130
+++Y ++N+ G+ G L+DA V + MP +PD + W A + + N
Sbjct: 539 RIEHYAALVNLIGRHGQLDDALEVINSMPM-----APDRSVWGAFLGACTAKKN 587
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 78/141 (55%), Gaps = 7/141 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y EAL F +Q +RP+ T + +++ C L +L+ G+ H +I DVVL
Sbjct: 177 YKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVL 236
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+++MY KCGS+E A V N+ + D+ +W+A+I+G+A A E + LFS+
Sbjct: 237 GTALIDMYAKCGSVEKATWVFS-----NLGPNKDVMAWSAMISGLAMHGLAEECVGLFSK 291
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M ++ + P+ +T ++ CAC
Sbjct: 292 MINQGVRPNAVTFLAVFCACV 312
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ + +S L LGR VH IL D +Q +++MY CG+L AR V DE+
Sbjct: 66 TFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEI 125
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
PQ PDL SWN+II + A +LF+ M +R +I
Sbjct: 126 PQ------PDLPSWNSIINANFQAGLVDMARNLFAVMPERNVI 162
>gi|302795249|ref|XP_002979388.1| hypothetical protein SELMODRAFT_110549 [Selaginella moellendorffii]
gi|300153156|gb|EFJ19796.1| hypothetical protein SELMODRAFT_110549 [Selaginella moellendorffii]
Length = 459
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + L+ C+SL SL GR++H I+ + D VL N ++ MY KCGSL DA V
Sbjct: 233 TLSILLGACASLESLDRGREIHATIIDRGMESDTVLLNSLVRMYSKCGSLLDAMRVFQSA 292
Query: 105 PQ---RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
Q R S D +WNAII A S N ++ LF EM P+G+T+ ++L AC
Sbjct: 293 LQDRDRGGGGSIDAITWNAIIVASARSSAGNLSIHLFHEMLLHGFDPNGITLTAVLTAC 351
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
Y ++ CSSL L GR +H +S DV+L I+NMY KCG + +A++V D M
Sbjct: 127 VYTIALAACSSLGDLASGRAIHARCYD-RSIRDVILDTAIINMYAKCGCVGEAKIVFDSM 185
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD------GLTVRSLLC 158
QR+ I +WNA IA A + EA+ L+ EM + L P T+ LL
Sbjct: 186 RQRDSI------AWNATIAAFARNGHLREAILLYLEMTAQGLDPSEATFTTAFTLSILLG 239
Query: 159 ACTS 162
AC S
Sbjct: 240 ACAS 243
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 18/139 (12%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQ-PDVV-----LQNYILNMYGKCGS 93
R+ +TYA L+ C + ++L GR++H HIL++K + P L N +L +Y +CG
Sbjct: 9 RVSAATYASLLKQCIARKALGHGRQIHAHILAAKEKDPRAAPTAPFLGNLLLQLYARCGD 68
Query: 94 LEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE------LI 147
L+ AR + D + RN L SW ++ G + A+ L+ + RE +
Sbjct: 69 LDRARSIFDGLAHRN------LFSWTTMMGGYVQRGRFDRALDLYHCLEKREEPSYRSIE 122
Query: 148 PDGLTVRSLLCACTSPSNV 166
PD L AC+S ++
Sbjct: 123 PDAFVYTIALAACSSLGDL 141
>gi|297808809|ref|XP_002872288.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318125|gb|EFH48547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 690
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 77/134 (57%), Gaps = 8/134 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A D + ++P T+ ++STCS L +L+ G+++H I S+ + D +L + +L+
Sbjct: 393 AVDVYDQMVSVGVQPDIVTFTSVLSTCSQLAALEKGKQIHLSISESRLETDELLLSALLD 452
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG++++A + + +P+++V+ SW +I+ S EA+ F EM+ +
Sbjct: 453 MYSKCGNVKEASRIFNSIPKKDVV------SWTVMISAYGSHGQPREALYHFDEMQKFGV 506
Query: 147 IPDGLTVRSLLCAC 160
PDG+T ++L AC
Sbjct: 507 KPDGVTFLAVLSAC 520
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY +I +L LGR +H ++ S DVV+ + ++ MY K ED+ V DEM
Sbjct: 108 TYPNVIKAYGALGREFLGRMIHTVVVKSGHVCDVVVASSLVGMYAKFNLFEDSVQVFDEM 167
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P+R D+ASWN +I+ +A +A+ LF M + P+ +++ + AC+
Sbjct: 168 PER------DVASWNTVISSFYQRGDAEKALELFGRMERSDFEPNSVSITVAISACS 218
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
IS CS L L+ G+++H L + + D + + +++MYG+C LE AR V +M +++
Sbjct: 214 ISACSRLLCLERGKEIHRKYLKKEFELDEYVNSALVDMYGRCDFLEMAREVFQQMRRKS- 272
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
L +WN++I G + ++ + L + M P T+ S+L AC+ N+L+
Sbjct: 273 -----LVAWNSMIRGYVARGDSKSCVELLNRMIIEGTRPSQTTLTSILMACSRSRNLLH 326
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 8/122 (6%)
Query: 42 RPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RPS T ++ CS R+L G+ VH +++ S D+ + ++++Y KCG ++ A
Sbjct: 305 RPSQTTLTSILMACSRSRNLLHGKFVHGYVIRSVVDADIYINCSLIDLYFKCGEVKLAET 364
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V + Q++V+E SWN +I+G S N +A+ ++ +M + PD +T S+L
Sbjct: 365 VFLK-TQKDVVE-----SWNVMISGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVLST 418
Query: 160 CT 161
C+
Sbjct: 419 CS 420
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 6/105 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+ C++ +SL+ + VH IL+ + DVVL ++N+Y C AR+V + + R+
Sbjct: 9 LLRECTNTKSLRQAKLVHQRILTVGLRSDVVLCKSLINVYFACKDHCSARLVFENIDIRS 68
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL-IPDGLT 152
D+ WN++++G + S ++ + +F + + + +PD T
Sbjct: 69 -----DVYIWNSLVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFT 108
>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
Length = 785
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 76/142 (53%), Gaps = 7/142 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
+ Y E L F+ ++ + + +T+A L+ +S+ SL LG+++H I+ S +V
Sbjct: 390 KGFYEEGLQLFNKMRQASVIADQ-ATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVF 448
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ +L++Y KCGS++DA EMP RN++ SWNA+I+ A A + F
Sbjct: 449 SGSALLDVYAKCGSIKDAVQTFQEMPDRNIV------SWNAMISAYAQNGEAEATLKSFK 502
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
EM L PD ++ +L AC+
Sbjct: 503 EMVLSGLQPDSVSFLGVLSACS 524
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 29 AFDFLQ--NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AFD + T F + +A ++S S+ ++GR++H + + + ++++ N +++
Sbjct: 295 AFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVD 354
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG E+A ++ + R+ + W A+I+ E + LF++MR +
Sbjct: 355 MYAKCGKFEEAEMIFTNLTHRSAV------PWTAMISAYVQKGFYEEGLQLFNKMRQASV 408
Query: 147 IPDGLTVRSLLCACTS 162
I D T SLL A S
Sbjct: 409 IADQATFASLLRASAS 424
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A ++ L + LG+++H ++ + +V + N +L+ Y K S+ DAR + DEM
Sbjct: 212 TFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEM 271
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR----DRELIP 148
P++ D S+N II+G A A LF E++ DR+ P
Sbjct: 272 PEQ------DGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFP 313
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 13/105 (12%)
Query: 50 ISTCSSLRSLQLGR-------KVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
+++ +SL SLQ + + I+ + PD N+ + + K G L AR + +
Sbjct: 12 LTSLTSLASLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFE 71
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
+MP +N + + N +I+G N EA LF M +R +
Sbjct: 72 KMPHKNTVST------NMMISGYVKSGNLGEARKLFDGMVERTAV 110
>gi|302795398|ref|XP_002979462.1| hypothetical protein SELMODRAFT_16355 [Selaginella moellendorffii]
gi|300152710|gb|EFJ19351.1| hypothetical protein SELMODRAFT_16355 [Selaginella moellendorffii]
Length = 190
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 78/150 (52%), Gaps = 7/150 (4%)
Query: 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILS 71
T ++ +Q + +A F + + R + L+ C S +L+ G+ HD
Sbjct: 5 TIVSAYSLQGQHEKAYALFKRM-DLEGVRADRVSIVTLLEACCSQGALETGKVFHDRARE 63
Query: 72 SKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNA 131
S ++++N ++NMYGKCGSL+DAR V D+M R+VI SWN II A
Sbjct: 64 SGLNSILMVRNAVINMYGKCGSLQDAREVFDKMDHRDVI------SWNTIIGSYAHSGLW 117
Query: 132 NEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++++ LF M+D ++ D +T + L AC+
Sbjct: 118 SQSVELFFLMKDEDIPVDKVTFVNALAACS 147
>gi|255552093|ref|XP_002517091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543726|gb|EEF45254.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 606
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 13/142 (9%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVH-DHILSSK 73
N+QP +A+V F + I +T C++S C L L LGR +H HI +
Sbjct: 469 NNQP-----KKAIVLFHHMVGEGLIPIE-NTLVCVLSACGQLGYLDLGRLIHMYHIERKQ 522
Query: 74 SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
V++ N +++MY KCG ++ A V + MP R DL SWN++IA AS +A +
Sbjct: 523 KGTSVIIANALIDMYAKCGVIDAAARVFNGMPGR------DLVSWNSMIAACASHGHAKQ 576
Query: 134 AMSLFSEMRDRELIPDGLTVRS 155
A+ +F +M PD +T S
Sbjct: 577 ALLMFGQMIHEGFKPDDITFES 598
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 80/184 (43%), Gaps = 45/184 (24%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ Y +AL FD + + + P+ T ++S CS L LG+ +H+++
Sbjct: 337 HDYYTDALKLFDSMLLSD---VEPNEVTMISVLSACSQKGDLSLGKSIHEYVRRKNLNLS 393
Query: 78 VVLQNYILNMYGKC-------------------------------GSLEDARVVSDEMPQ 106
V L N IL+MY KC G LE AR D+MP+
Sbjct: 394 VNLMNAILDMYVKCGCLVAAREIFDSMGTKDVFSWTSMVNGYAKTGELEIARKFFDDMPK 453
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
RNV+ SWNA+IAG + + +A+ LF M LIP +L+C ++ +
Sbjct: 454 RNVV------SWNAMIAGYSQNNQPKKAIVLFHHMVGEGLIP---IENTLVCVLSACGQL 504
Query: 167 LYLD 170
YLD
Sbjct: 505 GYLD 508
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
G +H I +++QN +++ Y G L AR V DE P R+V+ SW ++
Sbjct: 277 GESIHCAIWKIGFPCALLVQNGLIHFYSVHGCLVLARKVFDETPARDVV------SWTSM 330
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
I G ++ +A+ LF M ++ P+ +T+ S+L AC+ ++
Sbjct: 331 IDGYSTHDYYTDALKLFDSMLLSDVEPNEVTMISVLSACSQKGDL 375
>gi|413924724|gb|AFW64656.1| pentatricopeptide repeat protein PPR868-14 isoform 1 [Zea mays]
gi|413924725|gb|AFW64657.1| pentatricopeptide repeat protein PPR868-14 isoform 2 [Zea mays]
gi|413924726|gb|AFW64658.1| pentatricopeptide repeat protein PPR868-14 isoform 3 [Zea mays]
Length = 522
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 9/123 (7%)
Query: 41 IRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP ST+ ++ CS L S +LG +VH S D+ + + +++MY KCG +ED R
Sbjct: 264 LRPTVSTFVSVLGACSLLSSPELGEQVHCQGTKSGLVLDIKVGSALVDMYAKCGRVEDGR 323
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD-RELIPDGLTVRSLL 157
+ ++M +RNVI +W ++I G ++EA+ LF EMR+ R++ P+ T S+L
Sbjct: 324 RIFNQMAERNVI------TWTSMIDGYGKNGLSDEALQLFGEMRERRDVRPNHATFLSIL 377
Query: 158 CAC 160
AC
Sbjct: 378 SAC 380
>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
Length = 625
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 10/147 (6%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS---KSQPDVV 79
++EAL FD + N FR + ++ C+ L +L+ GR VH + + +S +V+
Sbjct: 231 FSEALRMFDQMMGN-GFRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVM 289
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
L+ +++MY KCG +++A V D ++S D+ WNA+I G+A + A+ LF
Sbjct: 290 LETALVDMYCKCGCMDEAWWVFDG------VQSQDVVLWNAMIGGLAMNGHGKRALELFR 343
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNV 166
M D +P+ T +LCACT V
Sbjct: 344 RMLDMGFVPNESTFVVVLCACTHTGRV 370
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P CL+ +L L R+V D S + D N +++ YGKCG LE AR V
Sbjct: 151 PVVTNCLLKLYCALGMLSDARRVFD--TSGATSLDAFSWNTMVSGYGKCGDLEAAREVFV 208
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
MP+R L SW+A+I +EA+ +F +M PD + + S+L AC
Sbjct: 209 RMPERG------LVSWSAMIDACIRAGEFSEALRMFDQMMGNGFRPDAVVLSSVLKAC 260
>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Vitis vinifera]
Length = 703
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 73/145 (50%), Gaps = 13/145 (8%)
Query: 25 EALVAFDFLQN---NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
EAL F +Q +NF PS + L S C+SL SL GR+VH ++ S+ DV +
Sbjct: 313 EALNLFALMQREGVQSNF---PSLISVL-SVCASLASLDHGRQVHAELVKSQFDSDVFVA 368
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+ ++ MY KCG L AR + D + D+ WN+II G A EA+ +F EM
Sbjct: 369 SVLITMYVKCGDLVKARQIFDRFSPK------DIVMWNSIITGYAQHGLVEEALQVFHEM 422
Query: 142 RDRELIPDGLTVRSLLCACTSPSNV 166
+ DG+T +L AC+ V
Sbjct: 423 CSSGMATDGVTFVGVLSACSYTGKV 447
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 88 YGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
Y + G +E AR V DEMP + ++ SWN+++AG + EA LF +M +R +
Sbjct: 26 YARIGQIESARRVFDEMPDKGIV------SWNSMVAGYFQNNRPREARYLFDKMPERNTV 79
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DVV + +++ Y + G L +AR + DEMP+RNVI SW +I+G + A
Sbjct: 170 DVVARTNMISGYCQEGRLAEARELFDEMPRRNVI------SWTTMISGYVQNGQVDVARK 223
Query: 137 LFSEMRDR 144
LF M ++
Sbjct: 224 LFEVMPEK 231
Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 14/111 (12%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPD--VVLQNYILNMYGKCGSLEDARVVSDE 103
Y I+ + + ++ R+V D + PD +V N ++ Y + +AR + D+
Sbjct: 19 YNSQIARYARIGQIESARRVFDEM------PDKGIVSWNSMVAGYFQNNRPREARYLFDK 72
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVR 154
MP+RN + SWN +I+G +EA F M +R ++ VR
Sbjct: 73 MPERNTV------SWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVR 117
Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 HILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127
++ + + V N +++ Y K + +AR D MP+RNV+ SW A++ G
Sbjct: 68 YLFDKMPERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVV------SWTAMVRGYVQ 121
Query: 128 PSNANEAMSLFSEMRDRELI 147
+EA +LF +M ++ ++
Sbjct: 122 EGLVSEAETLFWQMPEKNVV 141
>gi|242034867|ref|XP_002464828.1| hypothetical protein SORBIDRAFT_01g027350 [Sorghum bicolor]
gi|241918682|gb|EER91826.1| hypothetical protein SORBIDRAFT_01g027350 [Sorghum bicolor]
Length = 447
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 71/129 (55%), Gaps = 6/129 (4%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
FR T + C+ ++L+ G+++H I+ + D+ + + ++ MY +CG + DA
Sbjct: 107 GFRPNEFTVCSALKACAEEKALRFGKQLHGAIVKRLYKYDIHVGSALVTMYARCGEVFDA 166
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+ V D+MP+RN I +W ++I+G A EA+ LF +M+ R + + LTV LL
Sbjct: 167 QAVFDKMPRRNTI------TWTSMISGYAQSGCGEEAVLLFRKMKMRRVFVNHLTVVGLL 220
Query: 158 CACTSPSNV 166
AC S ++
Sbjct: 221 SACGSMQSI 229
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 7/116 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ CL+ +C +LG++VH ++ +V++ + + + Y +CG + A V D M
Sbjct: 14 TFVCLLKSCGERCDAKLGQQVHCCVVKG-GWSNVIVDSAVAHFYAQCGDVAAASTVFDRM 72
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
R+V+ SW +I + ++A+ +F +M P+ TV S L AC
Sbjct: 73 ASRDVV------SWTTMITAYVQHGHGDKALQMFPKMVSEGFRPNEFTVCSALKAC 122
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY+ + C+ L +L+ GR++H + +++ +V + +++MY +CG +++AR V D M
Sbjct: 316 TYSSALKACARLEALRDGRRIHGVVNKTQAFSNVFVGCSLIDMYMRCGKVDEARRVFDAM 375
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P+ N L +W +I G EA+ M+ D + ++L +C
Sbjct: 376 PEHN------LVTWKVMITGFTQNCLCEEALKYMYLMQQDGYDVDDFVLSTVLSSC 425
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 7/136 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EA++ F ++ F + T L+S C S++S+ LG+++H I+ + + ++ + + +
Sbjct: 196 EAVLLFRKMKMRRVF-VNHLTVVGLLSACGSMQSIYLGKELHAQIIKNCMEQNLQIGSTL 254
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+ Y +CG A + + MP R D +W A+I+G + + EA+ EM
Sbjct: 255 VWFYSRCGEHTYAARILEAMPDR------DAVAWTAMISGYNNLGHNVEALKSLDEMLWD 308
Query: 145 ELIPDGLTVRSLLCAC 160
+ P+ T S L AC
Sbjct: 309 GVAPNTYTYSSALKAC 324
>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Vitis vinifera]
Length = 853
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 62/113 (54%), Gaps = 6/113 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+AC++S C+S + G ++H ++SS + D + N +L MY KCG L DAR + D M
Sbjct: 250 TFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMM 309
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
P+ DL +WN +I+G +EA LF EM + PD +T S L
Sbjct: 310 PK------TDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFL 356
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +I C L S+ LGR VHD I + DV + + ++ Y + G + DAR + D M
Sbjct: 149 TFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRM 208
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P S D WN ++ G + + A +F EMR E P+ +T +L C S
Sbjct: 209 P------SKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCAS 260
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
+S C++L +L G+++H ++ + D+ ++ +++MY KCG+L+ A V D M ++N
Sbjct: 558 LSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNE 617
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+ SWN+IIA + ++++LF M + PD +T +++ AC V
Sbjct: 618 V------SWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQV 668
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 9/144 (6%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+ + N AL F +L R T A ++ C+ L +L LG+++H HIL +
Sbjct: 427 LNGMNNNALEIFRWLLQE-RMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSC 485
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNV-IESPDLASWNAIIAGVASPSNANEAMSL 137
+ + I++MY KCG L+ A Q + I D WN++I + EA+ L
Sbjct: 486 YVGSAIMDMYAKCGRLDLAH-------QTFIGISDKDAVCWNSMITSCSQNGKPEEAIDL 538
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F +M D +++ + L AC
Sbjct: 539 FRQMGMAGTKYDCVSISAALSACA 562
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 65/125 (52%), Gaps = 8/125 (6%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
R++P T++ + S +L+ G+++H +I+ + DV L++ ++++Y KC +E A
Sbjct: 344 RMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMA 403
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R + D QR + D+ A+I+G N A+ +F + + + +T+ S+L
Sbjct: 404 RKIFD---QRTPV---DIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVL 457
Query: 158 CACTS 162
AC
Sbjct: 458 PACAG 462
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ TC+ L GR+ H +L + + +L +L MY CG+ DA+ + ++ R
Sbjct: 52 ILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQL--RL 109
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
P WN +I G + A+ + +M +PD T ++ AC ++V
Sbjct: 110 WCSEP----WNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSV 163
>gi|449503129|ref|XP_004161848.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 769
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
Query: 36 NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
N R+ T A +++C++L S++ G+K H + + DV + N +L+MY KCG +
Sbjct: 511 NVGVRLNKFTLATALNSCANLASIEEGKKFHGLRIKLGTDVDVCVDNALLDMYAKCGCMT 570
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
A VV M +R+V+ SW +I G A EA+ +F EMR E P+ +T
Sbjct: 571 SANVVFRSMDERSVV------SWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHITFIC 624
Query: 156 LLCACT 161
+L AC+
Sbjct: 625 VLNACS 630
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y + C + G +H L + N++LN Y KCG L + DEMP
Sbjct: 218 YVSFLQRCVLTSDSRHGSAIHAKFLKGFLPFSLFFHNHVLNFYVKCGRLSYGLQLFDEMP 277
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR-DRELIPDGLTVRSLLCACT 161
+RNV+ SW+AIIAG NEA+SLF M D ++P+ T+ S L AC+
Sbjct: 278 ERNVV------SWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPNEFTLVSALHACS 328
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 63/128 (49%), Gaps = 8/128 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
++P T+A +++ ++L +LG +VH ++ S D+ + N + +MY K L D
Sbjct: 413 VKPDNFTFASILTGLAALSEFRLGLQVHGQLVKSGYGNDICVGNSLCDMYVKNQKLLDGF 472
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
DEM S D+ SW + AG +A+ + EM++ + + T+ + L
Sbjct: 473 KAFDEMS------SSDVCSWTQMAAGCLQCGEPMKALKVIYEMKNVGVRLNKFTLATALN 526
Query: 159 ACTSPSNV 166
+C + +++
Sbjct: 527 SCANLASI 534
>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
Length = 706
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY L+S L+ R +HD IL + DVV N ILNMYGKCG L+DA + M
Sbjct: 239 TYITLMSAYDQPSQLKSARYIHDCILRTGFDQDVV--NVILNMYGKCGCLQDAEAMFKSM 296
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
Q PD+ +WN +IA + + +EA+ + M++ ++PD T S++ AC +
Sbjct: 297 SQ------PDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACAT 348
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 8/134 (5%)
Query: 29 AFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY 88
A D LQ + ++ +I +C+ L +L GR++H I DV + N+++ MY
Sbjct: 22 AIDALQKRKDADLKECVR--VIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMY 79
Query: 89 GKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP 148
GKCGSLE+AR+V + P +NV SW +I A + EA++LF EM + + P
Sbjct: 80 GKCGSLEEARLVFEATPAKNVF------SWTILITVCAQHGRSQEALALFYEMLKQGIQP 133
Query: 149 DGLTVRSLLCACTS 162
++ + + AC++
Sbjct: 134 HSVSFTAAINACSA 147
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 13/141 (9%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+EAL ++ +Q + P TY +I C++L +++G++VH L ++ L
Sbjct: 318 SEALRFYELMQEEG---VVPDDYTYVSVIDACATLGDMEVGKQVHRR-LGDRAFQVTELA 373
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++NMYGKCG L+ AR + D+ + +V +WNA+I A S+ +A LF M
Sbjct: 374 NSLVNMYGKCGILDVARSIFDKTAKGSV-------TWNAMIGAYAQHSHEQQAFELFLLM 426
Query: 142 RDRELIPDGLTVRSLLCACTS 162
R P +T S+L AC +
Sbjct: 427 RLDGEEPSYITFMSVLSACAN 447
Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 45 TYACLISTCSS-LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
++ I+ CS+ L GR +H + Q VV +++MY KCGSLE++ +
Sbjct: 137 SFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFES 196
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
M + N + SWNA+IA A EA+ +M + +T +L+ A P
Sbjct: 197 MTELNAV------SWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSVTYITLMSAYDQP 250
Query: 164 SNV 166
S +
Sbjct: 251 SQL 253
>gi|449439723|ref|XP_004137635.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 769
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
Query: 36 NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
N R+ T A +++C++L S++ G+K H + + DV + N +L+MY KCG +
Sbjct: 511 NVGVRLNKFTLATALNSCANLASIEEGKKFHGLRIKLGTDVDVCVDNALLDMYAKCGCMT 570
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
A VV M +R+V+ SW +I G A EA+ +F EMR E P+ +T
Sbjct: 571 SANVVFRSMDERSVV------SWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHITFIC 624
Query: 156 LLCACT 161
+L AC+
Sbjct: 625 VLNACS 630
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y + C + G +H L + N++LN Y KCG L + DEMP
Sbjct: 218 YVSFLQRCVLTSDSRHGSAIHAKFLKGFLPFSLFFHNHVLNFYVKCGRLSYGLQLFDEMP 277
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR-DRELIPDGLTVRSLLCACT 161
+RNV+ SW+AIIAG NEA+SLF M D ++P+ T+ S L AC+
Sbjct: 278 ERNVV------SWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPNEFTLVSALHACS 328
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 63/128 (49%), Gaps = 8/128 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
++P T+A +++ ++L +LG +VH ++ S D+ + N + +MY K L D
Sbjct: 413 VKPDNFTFASILTGLAALSEFRLGLQVHGQLVKSGYGNDICVGNSLCDMYVKNQKLLDGF 472
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
DEM S D+ SW + AG +A+ + EM++ + + T+ + L
Sbjct: 473 KAFDEMS------SSDVCSWTQMAAGCLQCGEPMKALEVIYEMKNVGVRLNKFTLATALN 526
Query: 159 ACTSPSNV 166
+C + +++
Sbjct: 527 SCANLASI 534
>gi|357148978|ref|XP_003574958.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 598
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
ST+ L +C++LR +LG VH H L + DV + +L+MY KC L DAR + DE
Sbjct: 46 STFPSLAKSCAALRLPRLGCSVHAHALLVGAASDVFVLTSLLDMYAKCACLPDARRLFDE 105
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
MP SP L SWN ++ + S EA+++F+ MR + P G T+ LL
Sbjct: 106 MP------SPTLISWNCMVTAYSKSSCVTEAVAMFNTMRGVGVRPSGATLVGLL 153
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 77/137 (56%), Gaps = 5/137 (3%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
++AL FD + T+ +T + ++S C++L S +KV DH+++ Q D+ +
Sbjct: 331 DKALKMFDSMLC-TDVEPNEATVSSVLSACANLGSANQAKKVEDHVVAIGLQKDLRVATG 389
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+++ Y KCG++ AR + D + N DLA W+A+I G A +EA+ LF+EM++
Sbjct: 390 LIDTYCKCGNVTLAREIFDGVTTTN----RDLAIWSAMINGYACIGEGSEALVLFNEMQN 445
Query: 144 RELIPDGLTVRSLLCAC 160
+ + PD + LL AC
Sbjct: 446 QGVQPDAIVFTHLLTAC 462
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 7/138 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y + F+ +Q ++ LIS L +L + + VH ++ S + + L +
Sbjct: 229 YMKVFGLFNHMQT-AGYKFDSVALVNLISAAVLLGNLLVAKGVHALLIKSGFESEQDLMS 287
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++N+Y KCG LE A+ V D + ++NV+ W ++I+G A + ++A+ +F M
Sbjct: 288 SLVNLYAKCGDLEAAQEVFDAVHRKNVVL------WTSMISGYAEGGHPDKALKMFDSML 341
Query: 143 DRELIPDGLTVRSLLCAC 160
++ P+ TV S+L AC
Sbjct: 342 CTDVEPNEATVSSVLSAC 359
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLIST-CSSLRSLQLGRKVHDHILSSKSQPDVVL 80
EA+ F+ ++ +RPS T L+S SL + G ++ + + S D+ +
Sbjct: 128 TEAVAMFNTMRG---VGVRPSGATLVGLLSGRVDSLSTRNPGLCLYGYSMKSGLDTDLPV 184
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +L M + G L DA ++ D M +++V+ +W+A+++G + + LF+
Sbjct: 185 LNSVLTMLVRAGQLYDACLLFDSMHEKSVV------TWSAMVSGFLQTGDYMKVFGLFNH 238
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNVL 167
M+ D + + +L+ A N+L
Sbjct: 239 MQTAGYKFDSVALVNLISAAVLLGNLL 265
>gi|356495756|ref|XP_003516739.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g71420-like [Glycine max]
Length = 782
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 61/118 (51%), Gaps = 9/118 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLEDARVVSD 102
TYA L C+ + LQ G +H ++L Q DV L N+I+NMY KCG L AR V D
Sbjct: 92 TYASLFHACAQKKCLQHGMTLHHYVLHKDPTIQNDVFLTNHIINMYCKCGHLAYARYVFD 151
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+M RN++ SW A+I+G A E SLFS + P+ SLL AC
Sbjct: 152 QMSHRNIV------SWTALISGHAQSGLVRECFSLFSGLL-AHFRPNEFAFASLLSAC 202
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ + C+ + Q +H ++ Q D VL N +++ Y +CGSL + V +EM
Sbjct: 411 TFSIALKACAYFVTEQHAMAIHSQVIKKGFQEDTVLCNALMHAYARCGSLALSEQVFNEM 470
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
DL SWN+++ A A +A+ LF +M + PD T +LL AC+
Sbjct: 471 G------CHDLVSWNSMLKSYAIHGQAKDALELFQQMN---VCPDSATFVALLSACS 518
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
+FR +A L+S C ++ G +VH L +V + N ++ MY K
Sbjct: 186 AHFRPNEFAFASLLSACEE-HDIKCGMQVHAVALKISLDANVYVANSLITMYSKRSGFGG 244
Query: 97 --ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
A+ D +E +L SWN++IA ++A+ LF+ M
Sbjct: 245 GYAQTPDDAWTMFKSMEFRNLVSWNSMIAXFQLRGLGDKAICLFAHM 291
>gi|242059069|ref|XP_002458680.1| hypothetical protein SORBIDRAFT_03g038060 [Sorghum bicolor]
gi|241930655|gb|EES03800.1| hypothetical protein SORBIDRAFT_03g038060 [Sorghum bicolor]
Length = 552
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 46/121 (38%), Positives = 68/121 (56%), Gaps = 10/121 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSS----KSQPDVVLQNYILNMYGKCGSLEDARVV 100
T A ++ C+ +LQ+GR+VH +I++S DV N + +MY K G L+DA V
Sbjct: 305 TVAAVLPACAQTAALQVGREVHGYIVTSGLACDGALDVFACNALADMYAKSGGLDDACRV 364
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
D QR D+ASWN +I G AS + EA+ LF +M + L+PD +T+ L AC
Sbjct: 365 FDWTRQR------DVASWNIMIDGYASHGHGQEALMLFHQMIEEGLVPDEVTLLGALSAC 418
Query: 161 T 161
+
Sbjct: 419 S 419
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
++ A F ++ I T ++S C++ G VH + S + + N
Sbjct: 180 FDRATECFRKMREEGGVEISSFTVTGILSMCTATADFGRGAAVHGLSVKSGFDKEASVCN 239
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++++YGKC + DA +V + +P + DL SWN++++ ++ M LF+ MR
Sbjct: 240 ALIDLYGKCHRVHDATMVFEGLPDTD----KDLFSWNSMLSAHQYSADHTGTMRLFARMR 295
Query: 143 DRELIPDGLTVRSLLCAC 160
L+PD +TV ++L AC
Sbjct: 296 RTALLPDAVTVAAVLPAC 313
>gi|255582129|ref|XP_002531859.1| Cell division protein ftsH, putative [Ricinus communis]
gi|223528509|gb|EEF30537.1| Cell division protein ftsH, putative [Ricinus communis]
Length = 1157
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 8/135 (5%)
Query: 34 QNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91
+N N IRP+ T+ L+ C++ + + G++VH ++ DV + N ++N YG C
Sbjct: 753 RNMRNEGIRPNSLTFPFLLKACAACFATKEGKQVHVEVIKYGLDCDVYVNNNLVNFYGSC 812
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL 151
+ DA V DEMP+R V+ SWNA+I EA+ F +MRD PDG
Sbjct: 813 KKILDACKVFDEMPERTVV------SWNAVITSCVESLKLGEAIRYFLKMRDFGFEPDGT 866
Query: 152 TVRSLLCACTSPSNV 166
T+ +L C N+
Sbjct: 867 TMVLMLVICAEMGNL 881
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 9/127 (7%)
Query: 38 NFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
+F P +T ++ C+ + +L LGR +H ++ + L +++MY K G++
Sbjct: 858 DFGFEPDGTTMVLMLVICAEMGNLGLGRWIHSQVIERGLVLNYQLGTALVDMYAKSGAVG 917
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVR 154
A++V D M ++NV +W+A+I G+A A E + LF +M LI P+ +T
Sbjct: 918 YAKLVFDRMKEKNV------WTWSAMILGLAQHGFAKEGLELFLDMMRSSLIHPNYVTFL 971
Query: 155 SLLCACT 161
+LCAC+
Sbjct: 972 GVLCACS 978
Score = 41.6 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+ CSS++ L ++H I S Q D L ++ K SL ++ +S +
Sbjct: 670 LLKLCSSIKHLY---QIHSQIQVSGLQGDTFLVTQLI----KFSSLSPSKDLSYAQSILD 722
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P WN +I G A + +A+ ++ MR+ + P+ LT LL AC +
Sbjct: 723 HSVHPVPLPWNILIRGYADSNTPKDALFVYRNMRNEGIRPNSLTFPFLLKACAA 776
>gi|222635245|gb|EEE65377.1| hypothetical protein OsJ_20684 [Oryza sativa Japonica Group]
Length = 769
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ +++ C+S+ L LG ++H ++ PD + N ++ MY +CG+L DA + +M
Sbjct: 217 TFSSVLAACASIPMLGLGAQIH-QLVEKSFVPDTAISNALITMYSRCGALNDAEAIFKQM 275
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ DL SWNA+I A +A+ LF EMR +++P +T SLL AC +
Sbjct: 276 HTKK-----DLVSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVN 328
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
PD V N I+ + + G E AR D MP+R I SWN +I+G N ++
Sbjct: 147 PDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTI------SWNTMISGYEKNGNYISSV 200
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACTS 162
LFS+M + IPD T S+L AC S
Sbjct: 201 KLFSKMLEVGEIPDRHTFSSVLAACAS 227
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
G+ H+ + + +VV N ++ Y K G + AR + +EMP + DL SWN +
Sbjct: 71 GQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDK------DLVSWNTM 124
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
I+G S+ E+ LF EM D + + L ++ +
Sbjct: 125 ISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFM 160
Score = 37.7 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 82 NYILNMYGKCGSLEDARVVSDEMP----QRNVIESP----DLASWNAIIAGVASPSNANE 133
N ++ YG+ G DA+ + D +P Q N+++ ++ SWN+++ +
Sbjct: 46 NTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCS 105
Query: 134 AMSLFSEMRDRELI 147
A +LF+EM D++L+
Sbjct: 106 ARALFNEMPDKDLV 119
>gi|168044100|ref|XP_001774520.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674075|gb|EDQ60588.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 350
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+++ ++ +C+ L G+++H I+ S + V +Q ++NMY +C SL DAR + ++
Sbjct: 139 ASFLSILKSCNGSVHLDDGKQLHKAIIESGFELSVRVQTALVNMYCRCESLLDARKMFNK 198
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
+P++ D+ W +IAG A + EA +LF MRD L P+ +T +LL ACT P
Sbjct: 199 LPRK------DIGLWTTMIAGYAQTDHGEEAFALFQAMRDTGLQPNKMTFLALLKACTRP 252
Query: 164 S 164
Sbjct: 253 E 253
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 8/134 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AF Q + ++P+ T+ L+ C+ LQ G+ +H+HI + D + ++N
Sbjct: 223 AFALFQAMRDTGLQPNKMTFLALLKACTRPEFLQKGKWLHNHIRCAGLDSDEKVGTALIN 282
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
Y KC SL DAR V D + RNVI SW A+IA + A EA+ LF +M+ +
Sbjct: 283 AYSKCRSLVDARKVFDNLCTRNVI------SWTALIAAYSRNDRAEEALDLFEQMKREGV 336
Query: 147 IPDGLTVRSLLCAC 160
P+ +T +++ AC
Sbjct: 337 QPNEVTRNTVVKAC 350
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 7/143 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
Q EAL AF F + + R T+ L+ L+ GR+VH+ IL + + DV
Sbjct: 15 QGRRGEAL-AFFFRMQDEHVRPNRVTFLSLLKAFRGPGDLESGRRVHNFILERQLESDVR 73
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ + MY +CGS DA V + R++I WNA+I G ++A+ +F
Sbjct: 74 VGTALTCMYFRCGSALDAHRVFKRVQNRDII------VWNAMIEGYCQAGLRDKALEMFK 127
Query: 140 EMRDRELIPDGLTVRSLLCACTS 162
+M+ L PD + S+L +C
Sbjct: 128 DMKIAGLAPDVASFLSILKSCNG 150
>gi|15220741|ref|NP_176416.1| mitochondrial editing factor 9 [Arabidopsis thaliana]
gi|75097094|sp|O04590.1|PPR88_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62260, mitochondrial; Flags: Precursor
gi|2160154|gb|AAB60776.1| F19K23.18 gene product [Arabidopsis thaliana]
gi|332195821|gb|AEE33942.1| mitochondrial editing factor 9 [Arabidopsis thaliana]
Length = 656
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 8/120 (6%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P T L+S + L +L+LG ++H I+ PDV + N ++ MY +CG + ++R + D
Sbjct: 409 PHTLTSLLSASTGLVNLRLGMQMH-QIVVKTVIPDVPVHNALITMYSRCGEIMESRRIFD 467
Query: 103 EMP-QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
EM +R VI +WNA+I G A NA+EA++LF M+ + P +T S+L AC
Sbjct: 468 EMKLKREVI------TWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACA 521
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS---LEDARVVS 101
T+ +IS R + RK+ D + + DVV N +++ Y CG LE+AR +
Sbjct: 73 TWNTMISGYVKRREMNQARKLFDVM----PKRDVVTWNTMISGYVSCGGIRFLEEARKLF 128
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
DEMP R D SWN +I+G A EA+ LF +M +R +
Sbjct: 129 DEMPSR------DSFSWNTMISGYAKNRRIGEALLLFEKMPERNAV 168
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+VV N ++ Y K G + AR++ D+M R+ I SWN +I G S +A +
Sbjct: 280 NVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTI------SWNTMIDGYVHVSRMEDAFA 333
Query: 137 LFSEMRDRE 145
LFSEM +R+
Sbjct: 334 LFSEMPNRD 342
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N +++ Y G++E AR ++ P+++ + SWN+IIA + EA+ LF M
Sbjct: 347 NMMVSGYASVGNVELARHYFEKTPEKHTV------SWNSIIAAYEKNKDYKEAVDLFIRM 400
Query: 142 RDRELIPDGLTVRSLLCACTSPSNV 166
PD T+ SLL A T N+
Sbjct: 401 NIEGEKPDPHTLTSLLSASTGLVNL 425
>gi|18873857|gb|AAL79803.1|AC079874_26 putative pentatricopeptide repeat domain containing protein [Oryza
sativa Japonica Group]
Length = 391
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 80/143 (55%), Gaps = 8/143 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+L E+ A F + ++P T+A ++ TC++L +++LG+++H I+ + D
Sbjct: 57 SLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDE 116
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ + +++MY KCG + D+ +V +++ +R D SWNA+I G A EA+ +F
Sbjct: 117 YISSTLVDMYAKCGDMPDSLLVFEKVEKR------DFVSWNAMICGYALHGLGVEALRMF 170
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
M+ ++P+ T ++L AC+
Sbjct: 171 ERMQKENVVPNHATFVAVLRACS 193
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Query: 65 VHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124
VHD ++ S D + + +++MY KCG +++A+ + D + + V+ SWNAI++G
Sbjct: 2 VHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVV------SWNAILSG 55
Query: 125 VASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+ + EA FSEM D L PD T ++L C + + +
Sbjct: 56 FSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATI 97
>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 670
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 75/142 (52%), Gaps = 10/142 (7%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L+N+A+ F + N +T+ ++ C L L LG+ +H + ++V+
Sbjct: 264 GLFNDAVALFLRMDVAPN----AATFVSILGACGKLGCLNLGKGIHGLVSKYPHGKELVV 319
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MY KC S+ DA+ + DE+P++ D+ SW ++I+G+ E++ LF E
Sbjct: 320 SNTLMDMYVKCESVTDAKRLFDEIPEK------DIVSWTSMISGLVQYQCPQESLDLFYE 373
Query: 141 MRDRELIPDGLTVRSLLCACTS 162
M PDG+ + S+L AC S
Sbjct: 374 MLGSGFEPDGVILTSVLSACAS 395
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 63/112 (56%), Gaps = 6/112 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++S C+SL L GR VH++I S+ + DV + +++MY KCG +E A+ + + +P +N
Sbjct: 389 VLSACASLGLLDYGRWVHEYIDHSRIKWDVHIGTSLIDMYAKCGCIEMAQQMFNLLPSKN 448
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ +WNA I G+A + EA+ F + + P+ +T ++ AC
Sbjct: 449 I------RTWNAYIGGLAINGHGQEALKQFGYLVESGTRPNEITFLAVFSAC 494
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 9/116 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ +C+ + +++H + + D+ +QN +++Y CG A V D M
Sbjct: 186 TVPAVLKSCARFSGIAEVKQIHTLAVKTDLWCDMFVQNSFVHVYSICGDTVGASKVFDFM 245
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P R+V+ SW +I+G N+A++LF M ++ P+ T S+L AC
Sbjct: 246 PVRDVV------SWTGLISGYMKAGLFNDAVALFLRM---DVAPNAATFVSILGAC 292
>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
Length = 741
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 8/123 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ PS T ++ C+ L +L+ G+++H IL + + MY KCG+LED+
Sbjct: 424 VMPSYLTVTSVLRACACLAALEPGKQLHAQILKCGFGLGGSVGTALSTMYSKCGNLEDSM 483
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
VV MP R++I SWN+II+G + +A+ LF EM+ + PD +T ++LC
Sbjct: 484 VVFRRMPDRDII------SWNSIISGFSQHGRGRDALDLFEEMKLEGIAPDHITFINVLC 537
Query: 159 ACT 161
AC+
Sbjct: 538 ACS 540
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 10/129 (7%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHD---HILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
P ++A + + + + S G H + SS +V + +LNMY K G++ DAR
Sbjct: 120 PHSFAAVFTAAARVPSASAGAVAHAFACKLPSSSGSNNVFVSTALLNMYCKLGAISDARR 179
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSLLC 158
V D+MP RN + SW A+++G A+ + EA LF M ++ L + ++L
Sbjct: 180 VFDQMPHRNAV------SWAAMVSGYATGKCSEEAFELFRLMLQECPLEKNEFVATAVLS 233
Query: 159 ACTSPSNVL 167
A + P +L
Sbjct: 234 AVSVPLGLL 242
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 6/130 (4%)
Query: 32 FLQ-NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90
FLQ ++ F T+ +++ S + +L +G++ H ++ + V +++ +++MY K
Sbjct: 314 FLQMHSAGFSPTEFTFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAK 373
Query: 91 CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDG 150
CG DA+ D Q + + D+ W A+I G EA+ L+S M ++P
Sbjct: 374 CGCTGDAK---DGFHQ--LYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSY 428
Query: 151 LTVRSLLCAC 160
LTV S+L AC
Sbjct: 429 LTVTSVLRAC 438
Score = 40.8 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++S S L +G ++H +L V ++N ++ MY K ++ A V +RN
Sbjct: 231 VLSAVSVPLGLLIGVQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMAVFGSSKERN 290
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I +W+A+I G A A+ A ++F +M P T +L A +
Sbjct: 291 SI------TWSAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVGILNASS 337
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 39/154 (25%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSL---- 94
+RP T +S C+ + L+LG+++H+ + S + V L N +++MY KCGSL
Sbjct: 220 VRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAK 279
Query: 95 ---------------------------EDARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127
EDAR++ DEMP+R+V WNA++AG
Sbjct: 280 SVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVF------PWNALMAGYVQ 333
Query: 128 PSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
EA++LF EM++ ++ P+ +T+ +LL AC+
Sbjct: 334 NKQGKEAIALFHEMQESKVDPNEITMVNLLSACS 367
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 11/138 (7%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
EA+ F +Q + ++ P+ T L+S CS L +L++G VH +I + V L
Sbjct: 339 EAIALFHEMQES---KVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGT 395
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG+++ A + E+P +N + +W A+I G+A+ +A+EA+ F M
Sbjct: 396 SLVDMYAKCGNIKKAICIFKEIPDKNAL------TWTAMICGLANHGHADEAIEYFQRMI 449
Query: 143 DRELIPDGLTVRSLLCAC 160
D L PD +T +L AC
Sbjct: 450 DLGLQPDEITFIGVLSAC 467
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 42 RPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP T+ L+ C+ L+ G V H+ DV + N ++ + GS+ AR
Sbjct: 118 RPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMVLARR 177
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD--RELIPDGLTVRSLL 157
+ DE P R+V+ SWN +I G EA+ LF + + + + PD +T+ +
Sbjct: 178 LFDESPARDVV------SWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAV 231
Query: 158 CAC 160
C
Sbjct: 232 SGC 234
>gi|255567935|ref|XP_002524945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535780|gb|EEF37442.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 417
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 79/143 (55%), Gaps = 11/143 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
L NE LV F + + R+RPS T ++S C + +L+ GR VH +I ++ + +
Sbjct: 238 HGLANEGLVLFRQMLKD---RVRPSEVTVLAVLSACGQIGALESGRWVHSYIQNNGIEIN 294
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ + +++MY KCG+LEDAR+V + I+ D+ WN+++ G A+ + +A+ L
Sbjct: 295 AHVGSALIDMYSKCGNLEDARLVFER------IKYKDVVVWNSMVTGYATHGFSQDALQL 348
Query: 138 FSEMRDRELIPDGLTVRSLLCAC 160
F+EM P +T +L AC
Sbjct: 349 FNEMCGLGYQPTDITFIGVLSAC 371
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 75/173 (43%), Gaps = 34/173 (19%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSS 72
++ L+ +AL+ F ++ P+ T++ ++ +C L+ + +H +
Sbjct: 105 HAHTFHKLHYQALL---FYAQMLTQKVTPNAFTFSSILKSCP----LEFAQIIHAQAIKF 157
Query: 73 KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI---------------------- 110
D+ ++ ++++Y + G AR + DE+P+++++
Sbjct: 158 GLDSDLYVRTCLVDVYARGGDFVSARNLFDEIPEKSLVSSTAMITCFAKHGMVKEARVLF 217
Query: 111 ---ESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
E DL WN +I G ANE + LF +M + P +TV ++L AC
Sbjct: 218 DGLEDRDLVCWNVMIDGYVQHGLANEGLVLFRQMLKDRVRPSEVTVLAVLSAC 270
>gi|297798028|ref|XP_002866898.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312734|gb|EFH43157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 742
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 80/153 (52%), Gaps = 12/153 (7%)
Query: 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK 73
Y QP ++A+ FD + + NF+ T L+ C++ SL+ G+ +H +I+ ++
Sbjct: 477 YCEQP-----DKAIALFDRMVSE-NFKPSSITLVTLLMACANTGSLERGQMIHRYIIETE 530
Query: 74 SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
+ ++ L +++MY KCG LE +R + D Q+ D WN +I+G +
Sbjct: 531 HEMNLSLSTALIDMYAKCGHLEKSRELFDAASQK------DAVCWNVMISGYGMHGHVES 584
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
A++LF +M + ++ P G T +LL ACT V
Sbjct: 585 AIALFDQMEESDVKPTGPTFLALLSACTHAGLV 617
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P T C CS+L +L+ GR +H + + V+Q+ I ++Y K G+ +A +
Sbjct: 235 PRTLECGFQACSNLGALKEGRCLHGFAVKNGLASSNVVQSSIFSLYSKSGNPAEAYLSFR 294
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
E+ + D+ SW +IIA + N E+ +F EM+++ + PDG+ + L+
Sbjct: 295 ELGDQ------DMFSWTSIIASLVRSGNVEESFDMFWEMQNKGMQPDGIVISCLI 343
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQR 107
++S C+ L +G VH +L + + + + Y KCG L+DA +V DEMP+R
Sbjct: 136 VVSACAELLWFDVGSFVHGFVLKHGGFERNTAVGASFVYFYSKCGFLQDACLVFDEMPER 195
Query: 108 NVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+V+ +W AII+G + A+ +M D R+L C + SN+
Sbjct: 196 DVV------AWTAIISGHVQNRESERALGYLCKMHTVGSDVDKPNPRTLECGFQACSNL 248
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 9/107 (8%)
Query: 61 LGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIES-PDLASWN 119
LG+ +H +++ + + + N ++++YGK G L A R E+ ++ +WN
Sbjct: 418 LGKSLHCYVVKTSLDLTISVVNSLIDLYGKMGDLTVA--------WRMFCEADTNIVTWN 469
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
A+IA ++A++LF M P +T+ +LL AC + ++
Sbjct: 470 AMIASYVYCEQPDKAIALFDRMVSENFKPSSITLVTLLMACANTGSL 516
>gi|255579519|ref|XP_002530602.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529850|gb|EEF31782.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 567
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 8/148 (5%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD-V 78
+ L E L F +Q FR ++ C+I CS+L S G+++H + S+ + +
Sbjct: 322 EELSEETLDCFRRMQR-AGFRPDDCSFVCVIRACSNLSSPSQGKQIHAMTVKSEIPSNQI 380
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N ++ MY KCG+L+DAR + D MP+ N + S+N+IIAG A E++ LF
Sbjct: 381 SVNNALVAMYSKCGNLQDARRLFDRMPEHNTV------SFNSIIAGYAQHGIKTESLCLF 434
Query: 139 SEMRDRELIPDGLTVRSLLCACTSPSNV 166
+M + + P +T S+L AC V
Sbjct: 435 EQMLEIGIAPTRITFISVLSACAHTGKV 462
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 24/162 (14%)
Query: 17 QPIQNLYNEALVAFDFLQNNTNFRIR------PSTY-----ACLISTCSSLRSLQLGRKV 65
Q ++L E + D L + + + PSTY L S C+ L +
Sbjct: 9 QTFRHLLKECIANKDLLIGKSLYTLYLKSLLPPSTYLSNHFIILYSKCNRL-------TL 61
Query: 66 HDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGV 125
H + +P+V N +L+ Y K AR + D++PQ PD S+N +I
Sbjct: 62 AHHAFNQNHEPNVFSFNVLLDAYAKKSLTHIARGLFDQIPQ------PDAISYNTLITAY 115
Query: 126 ASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
A ++ A+ LF EMR+ + DG T+ ++ AC + N++
Sbjct: 116 ADCGDSLNALYLFREMRETGIDMDGYTLSGVITACCNDVNLI 157
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V ++N + YGK G LE+A V + IE+ D SWN +I +A+ L
Sbjct: 173 VSVKNSFVTYYGKNGFLEEAERVFYGIE----IENRDQVSWNTMIVAYGRQREGFKALKL 228
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F EM R + D T+ S+L A T
Sbjct: 229 FQEMTHRGIDVDMYTLASVLTAFT 252
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 64/145 (44%), Gaps = 10/145 (6%)
Query: 25 EALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
E A Q T+ I Y A +++ + L L G + H +++ + + + +
Sbjct: 221 EGFKALKLFQEMTHRGIDVDMYTLASVLTAFTCLEDLFGGFQFHANLIKTGFYRNCHVGS 280
Query: 83 YILNMYGKC-GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN-ANEAMSLFSE 140
++++Y KC G + D R + E I PDL WN +I+ + + E + F
Sbjct: 281 GLVDLYAKCGGGMLDCRKIFVE------IREPDLVLWNTMISAYSLDEELSEETLDCFRR 334
Query: 141 MRDRELIPDGLTVRSLLCACTSPSN 165
M+ PD + ++ AC++ S+
Sbjct: 335 MQRAGFRPDDCSFVCVIRACSNLSS 359
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 47/145 (32%), Positives = 78/145 (53%), Gaps = 17/145 (11%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHIL------SSKSQP 76
EAL F L+ + + P+ T+ L++ ++L L+LGR+ H H++ S +P
Sbjct: 373 EALGLFRMLKRES---VCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEP 429
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D+ + N +++MY KCGS+E+ V + M ++ D SWN +I G A EA+
Sbjct: 430 DIFVGNSLIDMYMKCGSVEEGLRVFENMVEK------DHVSWNTMIIGYAQNGYGMEALE 483
Query: 137 LFSEMRDRELIPDGLTVRSLLCACT 161
LF +M + PD +T+ LCAC+
Sbjct: 484 LFQKMLESGEKPDHVTMIGTLCACS 508
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 27/161 (16%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS-KSQPDVVLQNY 83
EAL AF + F+ T A ++S C++L + + G ++H ++ S K + D++L N
Sbjct: 240 EALEAFGRM-TELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNA 298
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRN-------------------------VIESPDLASW 118
+++MY KCG + +AR V D MP RN I+ D+ SW
Sbjct: 299 LVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSW 358
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
NA+IAG EA+ LF ++ + P T +LL A
Sbjct: 359 NALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNA 399
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 44/140 (31%), Positives = 73/140 (52%), Gaps = 7/140 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ EAL F + + +F + ++ +S CS L+ L+LG ++H I SK DV + +
Sbjct: 137 FEEALDWFVRMHRD-DFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGS 195
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++ Y KCG + AR V D M ++NV+ SWN +I A EA+ F M
Sbjct: 196 GLIDFYSKCGLVGCARRVFDGMEEKNVV------SWNCLITCYEQNGPAIEALEAFGRMT 249
Query: 143 DRELIPDGLTVRSLLCACTS 162
+ PD +T+ S++ AC +
Sbjct: 250 ELGFKPDEVTLASVVSACAT 269
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 25/148 (16%)
Query: 39 FRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
F S +A L+ C LRS + R VH ++ + +V +QN ++++YGKCG L+ AR
Sbjct: 20 FFTDSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYAR 79
Query: 99 VVSDEMPQRNV-------------------------IESPDLASWNAIIAGVASPSNANE 133
V D M +RNV + D SWN++IAG A E
Sbjct: 80 KVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEE 139
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACT 161
A+ F M + + + + S L AC+
Sbjct: 140 ALDWFVRMHRDDFVLNDYSFGSGLSACS 167
>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 75/134 (55%), Gaps = 8/134 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A + Q RI PS T L++ C+ L +++ G +HD+++ K + + ++ I++
Sbjct: 238 ALELFQKMQVERIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFELNPIVVTAIID 297
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCGS++ A V P+R L+ WN++I G+A NEA+ LFS ++ +L
Sbjct: 298 MYSKCGSIDKAVQVFQSAPRRG------LSCWNSMILGLAMNGQENEALQLFSVLQSSDL 351
Query: 147 IPDGLTVRSLLCAC 160
PD ++ ++L AC
Sbjct: 352 RPDDVSFIAVLTAC 365
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
RKV D + D+V N ++ KCG ++++R + D+M RN + SWN++
Sbjct: 176 ARKVFDRGMDF----DIVAWNTMIMGVAKCGLVDESRRLFDKMSLRNAV------SWNSM 225
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I+G +A+ LF +M+ + P T+ SLL AC
Sbjct: 226 ISGYVRNGRFFDALELFQKMQVERIEPSEFTMVSLLNACA 265
>gi|147794059|emb|CAN66615.1| hypothetical protein VITISV_022030 [Vitis vinifera]
Length = 818
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/113 (37%), Positives = 62/113 (54%), Gaps = 6/113 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+AC++S C+S + G ++H ++SS + D + N +L MY KCG L DAR + D M
Sbjct: 250 TFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMM 309
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
P+ DL +WN +I+G +EA LF EM + PD +T S L
Sbjct: 310 PK------TDLVTWNGMISGYVQNGFMDEASCLFHEMISAGMKPDSITFSSFL 356
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +I C L S+ LGR VHD I + DV + + ++ Y + G + DAR + D M
Sbjct: 149 TFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRM 208
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P S D WN ++ G + + A +F EMR E P+ +T +L C S
Sbjct: 209 P------SKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCAS 260
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 69/128 (53%), Gaps = 11/128 (8%)
Query: 44 STYACL-----ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ Y C+ +S C++L +L G+++H ++ + D+ ++ +++MY KCG+L+ A
Sbjct: 547 TKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLAC 606
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V D M ++N + SWN+IIA + ++++LF M + PD +T +++
Sbjct: 607 RVFDMMEEKNEV------SWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIIS 660
Query: 159 ACTSPSNV 166
AC V
Sbjct: 661 ACGHAGQV 668
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 9/145 (6%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+ + N AL F +L R T A ++ C+ L +L LG+++H HIL +
Sbjct: 427 LNGMNNNALEIFRWLLQE-RMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSC 485
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNV-IESPDLASWNAIIAGVASPSNANEAMSL 137
+ + I++MY KCG L+ A Q + I D WN++I + EA+ L
Sbjct: 486 YVGSAIMDMYAKCGKLDLAH-------QTFIGISXKDAVCWNSMITSCSQNGKPEEAIDL 538
Query: 138 FSEMRDRELIPDGLTVRSLLCACTS 162
F +M D +++ + L AC +
Sbjct: 539 FRQMGMAGTKYDCVSISAALSACAN 563
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ + S +L+ G+++H +I+ + DV L++ ++++Y KC +E A + D
Sbjct: 351 TFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMAHKIFD-- 408
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
QR + D+ A+I+G N A+ +F + + + +T+ S+L AC
Sbjct: 409 -QRTPV---DIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPAC 460
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ TC+ L GR+ H +L + + +L +L MY CG+ DA+ + ++ R
Sbjct: 52 ILQTCTDPSGLSHGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQL--RL 109
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
P WN +I G + A+ + +M +PD T ++ AC ++V
Sbjct: 110 WCSEP----WNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSV 163
>gi|357501199|ref|XP_003620888.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495903|gb|AES77106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 446
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
S + L+ C L+SL+LG++VH+ + SK +V L N ++ +Y KCGS++DAR V D+
Sbjct: 100 SDFLSLLKLCEDLKSLELGKRVHEFLRRSKFGGNVELCNRLIGLYVKCGSVKDARKVFDK 159
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
MP RNV S N +I G + + +F +MR + ++PD T +L C
Sbjct: 160 MPDRNV------GSLNLMIGGYNVNGLGIDGLLVFKQMRQQGVVPDEETFALVLAVCA 211
>gi|297746037|emb|CBI16093.3| unnamed protein product [Vitis vinifera]
Length = 702
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 72/134 (53%), Gaps = 8/134 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AF N RP+ TY+ +++ C ++ ++Q G+++H H++ + + + N +L
Sbjct: 198 AFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLT 257
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
+Y KCG +E+A +V + + QRN+I SW A I G + +A+ FS MR+ +
Sbjct: 258 LYSKCGMMEEAEIVFENLGQRNII------SWTASINGFYQHGDFKKALKQFSMMRESGI 311
Query: 147 IPDGLTVRSLLCAC 160
P+ T +L +C
Sbjct: 312 EPNEFTFSIVLASC 325
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 73/117 (62%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + L+ C+++ +L+ G+++H + + + DV +++ +++MY KCG + +A+++ M
Sbjct: 458 TISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMM 517
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P+RN + +WN++I G A+ NEA+ LF++M + + D LT ++L AC+
Sbjct: 518 PERNTV------TWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACS 568
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 23/135 (17%)
Query: 34 QNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91
+ N +RP+ + ++ C L + G +H IL + + D + + ++ MY KC
Sbjct: 359 EGNKPTSLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKC 418
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL 151
G +E A V D +P NV+ SWN +IAG FS+M D+ P +
Sbjct: 419 GHVEKACRVFDWIP--NVV------SWNTLIAG-------------FSQMLDQGFCPSSV 457
Query: 152 TVRSLLCACTSPSNV 166
T+ SLL ACT+ +N+
Sbjct: 458 TISSLLPACTNVANL 472
Score = 43.9 bits (102), Expect = 0.026, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
+S C ++LGR+ H ++ D + +++MY KCG ++ A V D+M
Sbjct: 120 LSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKM----- 174
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
S D A+ N +I+ A +A +F ++ + P+ T ++L C + S +
Sbjct: 175 -TSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAI 230
>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Brachypodium distachyon]
Length = 814
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 6/159 (3%)
Query: 3 RNLKTQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLG 62
+N KT + +T + +QN E + +T++ I S+L + LG
Sbjct: 402 KNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLG 461
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
R++H +++ S V + +L+MY KCG L++A DEMP+RN I SWNA+I
Sbjct: 462 RQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSI------SWNAVI 515
Query: 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ A A A+ +F M PD +T S+L AC+
Sbjct: 516 SAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACS 554
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
YA L+S S+ + +G+++H ++ + ++ N +++MY KCG L+ A+
Sbjct: 344 YASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKT------ 397
Query: 106 QRNVIESPDLA--SWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
N I D SW A+I G EA+ LF MR L PD T S + A
Sbjct: 398 --NFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKA 451
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 11/108 (10%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ +++ + + L LGR+VH +++ + +V + N +L+ Y KC L++ + + EM
Sbjct: 243 TFSTVLTVATGVGDLCLGRQVHG-LVARATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEM 301
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR----DRELIP 148
+R D S+N +IAG A A+ + LF EM+ DR+ +P
Sbjct: 302 IER------DNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALP 343
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+VV+ N +L+ Y K G L AR V EMP R D ++NA++ G + + EA
Sbjct: 172 HSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHR------DSVTYNAMMMGCSKEGSHAEA 225
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+ LF+ MR + L T ++L T ++
Sbjct: 226 LDLFAAMRRKGLAATRFTFSTVLTVATGVGDL 257
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 30/112 (26%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN------------------------VIE 111
P N +L+ G L AR + D+MP RN +
Sbjct: 32 PATYRLNLLLHSLISSGRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQLSAAHHLFLS 91
Query: 112 SP----DLASWNAIIAGVASP--SNANEAMSLFSEMRDRELIPDGLTVRSLL 157
SP D +W +I AS + A++A+SLF +M + PD +TV ++L
Sbjct: 92 SPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATVL 143
>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
Length = 829
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 70/139 (50%), Gaps = 13/139 (9%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
L R TY L+S CSS + LGR +H I++ + + +V++ N +++MY KCG
Sbjct: 337 LYQRMQLRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCG 396
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE------- 145
S +AR V D+M QR++I SW II+ EA LF +M + E
Sbjct: 397 SHTEARAVFDKMEQRSII------SWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQR 450
Query: 146 LIPDGLTVRSLLCACTSPS 164
+ PD L ++L AC S
Sbjct: 451 VKPDALAFVTILNACADVS 469
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 7/130 (5%)
Query: 34 QNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91
+N ++ R++P A +++ C+ + +L+ G+ V + S D + ++N+YGKC
Sbjct: 444 KNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKC 503
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL 151
G +E+ R + D V PD+ WNA+IA A ++EA+ LF M + PD
Sbjct: 504 GEIEEGRRIFD-----GVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSF 558
Query: 152 TVRSLLCACT 161
+ S+L AC+
Sbjct: 559 SFVSILLACS 568
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 8/142 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F F+ + S ++S CSS +Q GR +H I S + ++++ N +
Sbjct: 230 EALRHFRFMLL-LGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVANAV 288
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+ MYG+CG++E+AR V D M + D+ SWN +++ +A+ L+ M+ R
Sbjct: 289 MTMYGRCGAVEEARKVFDAMDE----ALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQLR 344
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
D +T SLL AC+S +V
Sbjct: 345 ---ADKVTYVSLLSACSSAEDV 363
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 7/128 (5%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP-DVVLQNYILNMYGKCGSLEDAR 98
R +TYA L+ C+ ++L GRK+H + P +++L N+I++MY C S DA+
Sbjct: 40 RAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSPGDAK 99
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
D + QRN L SW ++A A + E + MR + PD +T + L
Sbjct: 100 AAFDALEQRN------LYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALG 153
Query: 159 ACTSPSNV 166
+C P ++
Sbjct: 154 SCGDPESL 161
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 9/129 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP T+ + +C SL+ G ++H ++ S+ + D + N +LNMY KCGSL A+
Sbjct: 141 VRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAK 200
Query: 99 VVSDEMPQ-RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
V +M + RNVI SW+ + A N EA+ F M + + ++L
Sbjct: 201 RVFAKMERTRNVI------SWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTIL 254
Query: 158 CACTSPSNV 166
AC+SP+ V
Sbjct: 255 SACSSPALV 263
>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 4/137 (2%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F + + + T+ ++ CS+L L G++VH I + Q + + +
Sbjct: 298 EALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSAL 357
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+NMY KCG L AR + D+ + DL SWN IIA A EA++ F EMR
Sbjct: 358 INMYSKCGELGTARKMFDD----GMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKS 413
Query: 145 ELIPDGLTVRSLLCACT 161
PD +T LL AC+
Sbjct: 414 GFKPDDVTYVGLLSACS 430
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 11/79 (13%)
Query: 68 HILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127
++ + +VV N +++M +CG +E+AR + D MP+R+VI SW A+IAG+
Sbjct: 182 YLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVI------SWTAMIAGL-- 233
Query: 128 PSNANEAMSLFSEMRDREL 146
+EA+ LF M +R+L
Sbjct: 234 ---LDEALDLFERMPERDL 249
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +IS ++ R++ D + + K +VV ++ Y + + DA + +EM
Sbjct: 100 TWTTVISGYIKCGMIEEARRLFDRVDAKK---NVVTWTAMVGGYIRSNKISDAEKLFNEM 156
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P +NV+ SWN +I G A + AM LF +M +R ++ TV S+L C
Sbjct: 157 PNKNVV------SWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWN-TVMSMLAQC 205
Score = 42.0 bits (97), Expect = 0.082, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE-LIPDG 150
G L AR + +EMP++NVI SW +I G + EA+ +FS M P+
Sbjct: 263 GDLRRARKLFNEMPKKNVI------SWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQ 316
Query: 151 LTVRSLLCACTS 162
T S+L AC++
Sbjct: 317 GTFVSVLGACSN 328
>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 749
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ ++S CS+L +L+ G ++H I+ S DVV+ +++MY KCGS++ A EM
Sbjct: 374 TFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEM 433
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P R +I SW ++I G A + +A+ LF +MR + P+ +T +L AC+
Sbjct: 434 PSRTMI------SWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACS 484
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RI S Y L+ C R +H HI+ + D+ + +++N+Y KCG +E A
Sbjct: 55 RIESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHK 114
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V D +P+RNV +W ++ G S+ A+ LF +M + P T+ +L A
Sbjct: 115 VFDNLPRRNV------NAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNA 168
Query: 160 CTSPSNV 166
C+S ++
Sbjct: 169 CSSLQSI 175
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 76/151 (50%), Gaps = 19/151 (12%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+A + F + + ++P+ Y ++S C + +L LG ++H + ++++
Sbjct: 239 GQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIK 298
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG-----------VASPSN 130
N I+ +Y KCG L +A+ + + M E+ +L +WNA+IAG VA+ +
Sbjct: 299 NSIMYLYLKCGWLIEAQKLFEGM------ETLNLVTWNAMIAGHAKMMDLAEDDVAAHKS 352
Query: 131 ANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ A+++F ++ + PD T S+L C+
Sbjct: 353 GSTALAMFQKLYRSGMKPDLFTFSSVLSVCS 383
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 43 PSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
PS Y +++ CSSL+S++ G++VH +++ D + N + + Y K LE A
Sbjct: 157 PSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFA--- 213
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ +I+ D+ SW ++I+ A ++S F +M + P+ T+ S+L AC
Sbjct: 214 ---IKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSAC 270
>gi|15240572|ref|NP_200385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171613|sp|Q9FM64.1|PP431_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g55740, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 21; Flags: Precursor
gi|9758608|dbj|BAB09241.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332009292|gb|AED96675.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 830
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 13/144 (9%)
Query: 26 ALVAF-DFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
AL+ F + L+N I P + + C +L+ + GR VH +++ S + V + +
Sbjct: 157 ALMGFVEMLEN----EIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVAS 212
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+ +MYGKCG L+DA V DE+P RN + +WNA++ G EA+ LFS+MR
Sbjct: 213 SLADMYGKCGVLDDASKVFDEIPDRNAV------AWNALMVGYVQNGKNEEAIRLFSDMR 266
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
+ + P +TV + L A + V
Sbjct: 267 KQGVEPTRVTVSTCLSASANMGGV 290
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A L+S + +L+LG++V + + + D+VL + +++MY KCGS+ DA+ V D
Sbjct: 377 TLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDST 436
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
++ DL WN ++A A + EA+ LF M+ + P+ +T
Sbjct: 437 VEK------DLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVIT 478
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 73/142 (51%), Gaps = 11/142 (7%)
Query: 29 AFDFLQNNTNFRIRPSTYACLI--STCSSLRSLQLGRKVHDHILSSKSQPDVV-LQNYIL 85
A FL+ +RP+ ++ + S C+ L SL +GR +H +I+ + +V ++ ++
Sbjct: 530 AILFLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGYIIRNLQHSSLVSIETSLV 589
Query: 86 NMYGKCGSLEDA-RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+MY KCG + A +V ++ +L NA+I+ A N EA++L+ +
Sbjct: 590 DMYAKCGDINKAEKVFGSKL-------YSELPLSNAMISAYALYGNLKEAIALYRSLEGV 642
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
L PD +T+ ++L AC ++
Sbjct: 643 GLKPDNITITNVLSACNHAGDI 664
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLE 95
N RI P Y ++ C R L G+++H IL + + ++ ++ Y KC +LE
Sbjct: 65 NLRIGPEIYGEILQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALE 124
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
A V+ ++ RNV SW AII A+ F EM + E+ PD V +
Sbjct: 125 IAEVLFSKLRVRNVF------SWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPN 178
Query: 156 LLCACTS 162
+ AC +
Sbjct: 179 VCKACGA 185
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 8/149 (5%)
Query: 19 IQNLYNE-ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+QN NE A+ F ++ R + CL S +++ ++ G++ H + + + D
Sbjct: 250 VQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCL-SASANMGGVEEGKQSHAIAIVNGMELD 308
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+L +LN Y K G +E A +V D M +++V+ +WN II+G +A+ +
Sbjct: 309 NILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVV------TWNLIISGYVQQGLVEDAIYM 362
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNV 166
MR +L D +T+ +L+ A N+
Sbjct: 363 CQLMRLEKLKYDCVTLATLMSAAARTENL 391
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
P+V+ N I+ + G +++A+ + +M +I P+L SW ++ G+ + EA+
Sbjct: 474 PNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGII--PNLISWTTMMNGMVQNGCSEEAI 531
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACT 161
+M++ L P+ ++ L AC
Sbjct: 532 LFLRKMQESGLRPNAFSITVALSACA 557
>gi|302816601|ref|XP_002989979.1| hypothetical protein SELMODRAFT_130617 [Selaginella moellendorffii]
gi|300142290|gb|EFJ08992.1| hypothetical protein SELMODRAFT_130617 [Selaginella moellendorffii]
Length = 395
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 6/129 (4%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
L + FR +Y ++ CSSL + + G+ +H I+ + + ++NMYGKCG
Sbjct: 131 LMDLEGFRADKVSYTSVLQACSSLVAPREGKLIHASIVQGGVVSETSVGTALINMYGKCG 190
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
L +AR + ++MP+ D+ SW A I A A A+ LF + L+PD +
Sbjct: 191 LLMEARTMLEKMPRH------DIGSWTATIVAFAQNGCAAGAIELFQNLNLGGLVPDWIV 244
Query: 153 VRSLLCACT 161
V S+LCAC+
Sbjct: 245 VVSVLCACS 253
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
Q D+V ++ +Y + G L DAR V DEMP++N++ WNA++ A+ +A
Sbjct: 3 QRDMVSCTAMIGIYSQDGFLVDARRVFDEMPEKNLV------PWNALVTAHAAAGMLKDA 56
Query: 135 MSLFSEM 141
+F M
Sbjct: 57 RRVFEGM 63
>gi|255570402|ref|XP_002526160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534537|gb|EEF36236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 762
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 77/144 (53%), Gaps = 10/144 (6%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
QN Y ++ + L N + P TY ++S C+ L ++ GR++H I+ +K +
Sbjct: 263 QNGYAHEVI--ELLSNMKSCGFHPDEFTYTSILSACACLEHVEGGRQLHSIIIKNKFASN 320
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ + N +++MY K G LEDAR Q +++S D SWNAII G + EA +
Sbjct: 321 LFVGNALIDMYAKSGFLEDAR------KQFELMKSRDNVSWNAIIVGYVQEEDEVEAFLM 374
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F +M ++PD +++ S+L AC
Sbjct: 375 FQKMHLVGILPDEVSLASILSACA 398
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T+ ++ C+ L S+ GR++H I + D + +++MY KCG + + V ++
Sbjct: 591 ATFVSVLRACAVLSSIGDGREIHSLIFRTGLDLDESTCSALIDMYAKCGDVRSSMQVFED 650
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
M +N D+ SWN++I G A A A+ +F+EM+ +IPD +T +L AC+
Sbjct: 651 MHSKN-----DVISWNSMIVGFAKNGYAENALRIFNEMKQAHVIPDDVTFLGVLTACSHA 705
Query: 164 SNV 166
V
Sbjct: 706 GRV 708
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
ST ++S +SL L G VH + +V + + ++NMY KC LE A+ V D
Sbjct: 186 STLGSVLSAIASLTDLDFGLLVHAEAIKQGLDSNVYVGSSLINMYAKCKELEAAKKVFDP 245
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
+ +RNV+ WNA++ G A A+E + L S M+ PD T S+L AC
Sbjct: 246 IDERNVV------LWNAMVGGYAQNGYAHEVIELLSNMKSCGFHPDEFTYTSILSACACL 299
Query: 164 SNV 166
+V
Sbjct: 300 EHV 302
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 9/141 (6%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
AF Q I P + A ++S C+++ + G+ +H + S + + + +++
Sbjct: 371 AFLMFQKMHLVGILPDEVSLASILSACANVEGFEQGKPIHCLSVKSGLETSLYAGSSLID 430
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG + A+ + MP+ +V+ S NA+IAG A P N EA+ LF +M+ L
Sbjct: 431 MYAKCGDVGSAQKILKSMPEHSVV------SINALIAGYA-PVNLEEAIILFEKMQAEGL 483
Query: 147 IPDGLTVRSLLCACTSPSNVL 167
P +T SLL C P ++
Sbjct: 484 NPSEITFASLLDGCGGPEQLI 504
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 15/147 (10%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQ-PDVVLQ 81
EA++ F+ +Q + PS T+A L+ C L LG ++H IL Q D L
Sbjct: 470 EAIILFEKMQAEG---LNPSEITFASLLDGCGGPEQLILGIQIHCLILKRGLQYDDDFLG 526
Query: 82 NYILNMYGKCGSLEDARVVSDEM--PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+L MY K DAR++ E P+ ++ W A+I+G+A + ++EA+ +
Sbjct: 527 VSLLGMYVKSLRKTDARILFSEFSNPKSTIL-------WTAMISGLAQNNCSDEALQFYQ 579
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNV 166
EMR +PD T S+L AC S++
Sbjct: 580 EMRSCNALPDQATFVSVLRACAVLSSI 606
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A ++S C+ L S++ GR VH +++ + +++MY K + D R V D
Sbjct: 20 TFAIVLSGCARLDSVEFGRLVHCNVVKLGFEFSSFCVGALIDMYAKNNRMSDCRRVFDGG 79
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD 149
S D SW ++IAG EA+ +F +M+ PD
Sbjct: 80 V------SLDTVSWTSLIAGYVKAGLPEEALEVFEQMKKVGREPD 118
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 64 KVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIA 123
+V + + +PD V ++N Y G L+DA + +MP +P++ +WN +I+
Sbjct: 105 EVFEQMKKVGREPDQVAFVTVINAYVALGRLDDALGLFFQMP------NPNVVAWNVMIS 158
Query: 124 GVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
G A + +++ LF MR + T+ S+L A S +++
Sbjct: 159 GHAQRGHETKSIELFCNMRKAGIKSTRSTLGSVLSAIASLTDL 201
>gi|449460752|ref|XP_004148109.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Cucumis sativus]
Length = 784
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 11/158 (6%)
Query: 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLI--STCSSLRSLQLGRKVHDHI 69
T +S + EA++ FD + ++ P+ C+I S C+ L SL G K+H +I
Sbjct: 512 TLISSYKQSGILAEAIILFDKMVKE---KVYPNKVTCIIVLSACAHLASLDEGEKIHQYI 568
Query: 70 LSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPS 129
+ + ++ ++ +++MY KCG LE +R + + +R+VI WN +I+
Sbjct: 569 KENGFESNITIRTALIDMYAKCGELETSRKLFNSTEERDVI------LWNVMISNYGMHG 622
Query: 130 NANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
+ AM +F M + + P+ T SLL AC +VL
Sbjct: 623 HVESAMEIFQLMEESNIKPNAQTFLSLLSACNHTGHVL 660
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
+IS+CS + ++ +GR +H + + + +V + N +++MYGK G + + QR+
Sbjct: 447 VISSCSQVGAINIGRSIHCYAIKNSIIENVSVANSLMDMYGKSGHVTATWRIFHRTLQRD 506
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
VI SWN +I+ EA+ LF +M ++ P+ +T +L AC
Sbjct: 507 VI------SWNTLISSYKQSGILAEAIILFDKMVKEKVYPNKVTCIIVLSAC 552
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 53 CSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIES 112
C L +L G+ +H L + V+++ IL+MY +CGS E+A ++ Q+
Sbjct: 250 CVDLDALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAYRCFCKLDQK----- 304
Query: 113 PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
DL SW +IIA + +E + LF EM+ E+IPD + + +L
Sbjct: 305 -DLISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCML 348
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 13/138 (9%)
Query: 29 AFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDV---VLQNY 83
AFDF P+ + ++STC+ L G +H L+SK V + +
Sbjct: 122 AFDFYLQMRASSSLPNQFTVPMVVSTCAELMMFNHGMNIHG--LTSKLGLFVGNSAIGSS 179
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+ MY KCG +E A ++ E+ ++V+ +W A+I G + + + EM
Sbjct: 180 FIYMYSKCGHVESASIMFSEITVKDVV------TWTALIVGYVQNNESGRGLKCLFEMHR 233
Query: 144 RELIPDGLTVRSLLCACT 161
P+ T+ S AC
Sbjct: 234 IGGTPNYKTIGSGFQACV 251
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
L +N + T+ L+S C+ + GR + D + +P + I+++ G+ G
Sbjct: 633 LMEESNIKPNAQTFLSLLSACNHTGHVLEGRHLFDRMQKYGIEPSLKHYASIIDLLGRSG 692
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIA 123
SLE A + MP +PD W ++++
Sbjct: 693 SLEAAEALVLSMPI-----TPDGTVWGSLLS 718
>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
Length = 615
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 7/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C+ + G++VH I+ DV + N ++++YG CG L+ AR V DEM
Sbjct: 130 TFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEM 189
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P+R+ L SWN++I + + A+ LF EM+ R PDG T++S+L AC
Sbjct: 190 PERS------LVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAG 240
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 73/143 (51%), Gaps = 13/143 (9%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS---KSQPDVV 79
Y+ AL F +Q + F T ++S C+ L SL LG H +L DV+
Sbjct: 210 YDSALQLFREMQRS--FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVL 267
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
++N ++ MY KCGSL A V M +R DLASWNA+I G A+ A EAM+ F
Sbjct: 268 VKNSLIEMYCKCGSLRMAEQVFQGMQKR------DLASWNAMILGFATHGRAEEAMNFFD 321
Query: 140 EMRDRE--LIPDGLTVRSLLCAC 160
M D+ + P+ +T LL AC
Sbjct: 322 RMVDKRENVRPNSVTFVGLLIAC 344
>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
Length = 634
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 69/120 (57%), Gaps = 8/120 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++S C+ + L+LGR +H H + + + + + + +++MYGKCG +ED+ DEMP++N
Sbjct: 266 VLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKN 325
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL--IPDGLTVRSLLCACTSPSNV 166
++ + N++I G A + A++LF EM R P+ +T SLL AC+ V
Sbjct: 326 LV------TRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAV 379
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ C +SLR G+++H + DV + +MY K +DAR + DE+
Sbjct: 60 TFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEI 119
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P+RN L +WNA I+ + EA+ F E R + P+ +T + L AC+
Sbjct: 120 PERN------LETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACS 170
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 15/167 (8%)
Query: 3 RNLKTQLRF---TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSL 59
RNL+T F + + +P + + EA + F + + N T+ ++ CS L
Sbjct: 122 RNLETWNAFISNSVTDGRPREAI--EAFIEFRRIDGHPN----SITFCAFLNACSDWLHL 175
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
LG ++H +L S DV + N +++ YGKC + + ++ EM +N + SW
Sbjct: 176 NLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAV------SWC 229
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+++A +A L+ R + + S+L AC + +
Sbjct: 230 SLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGL 276
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY K E AR+V P RNV+ SW ++I+G+A + + A+ F EMR +
Sbjct: 1 MYSKLDHPESARLVLRLTPARNVV------SWTSLISGLAQNGHFSTALVEFFEMRREGV 54
Query: 147 IPDGLT 152
+P+ T
Sbjct: 55 VPNDFT 60
>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 755
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ ++S CS+L +L+ G ++H I+ S DVV+ +++MY KCGS++ A EM
Sbjct: 380 TFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEM 439
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P R +I SW ++I G A + +A+ LF +MR + P+ +T +L AC+
Sbjct: 440 PSRTMI------SWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACS 490
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RI S Y L+ C R +H HI+ + D+ + +++N+Y KCG +E A
Sbjct: 61 RIESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHK 120
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V D +P+RNV +W ++ G S+ A+ LF +M + P T+ +L A
Sbjct: 121 VFDNLPRRNV------NAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNA 174
Query: 160 CTSPSNV 166
C+S ++
Sbjct: 175 CSSLQSI 181
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 76/151 (50%), Gaps = 19/151 (12%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+A + F + + ++P+ Y ++S C + +L LG ++H + ++++
Sbjct: 245 GQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIK 304
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG-----------VASPSN 130
N I+ +Y KCG L +A+ + + M E+ +L +WNA+IAG VA+ +
Sbjct: 305 NSIMYLYLKCGWLIEAQKLFEGM------ETLNLVTWNAMIAGHAKMMDLAEDDVAAHKS 358
Query: 131 ANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ A+++F ++ + PD T S+L C+
Sbjct: 359 GSTALAMFQKLYRSGMKPDLFTFSSVLSVCS 389
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 43 PSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
PS Y +++ CSSL+S++ G++VH +++ D + N + + Y K LE A
Sbjct: 163 PSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFA--- 219
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ +I+ D+ SW ++I+ A ++S F +M + P+ T+ S+L AC
Sbjct: 220 ---IKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSAC 276
>gi|218198581|gb|EEC81008.1| hypothetical protein OsI_23770 [Oryza sativa Indica Group]
Length = 275
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
TYA L+ C + R ++G+++H ++S V + +L Y K G L AR V D
Sbjct: 28 GTYALLLQECVNRRDARMGKRIHARMVSVGFGGGVYIVTKLLIFYVKIGELGVARKVFDG 87
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
MPQR+V+ +WNA+I+G A A+ +F MR + PD T S+LCAC
Sbjct: 88 MPQRSVV------AWNAMISGCARGGAEARAVEMFGSMRAEGMRPDQFTFASVLCACA 139
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 16/136 (11%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSK-------SQPDVVLQNYILNMYGKC 91
+RP T+A ++ C+ L +L+ GR+VH ++ S+ +V + + +++MY KC
Sbjct: 124 MRPDQFTFASVLCACARLAALEHGRRVHGVMVKSRVGCGGGGGGGNVFVDSALVDMYLKC 183
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDG 150
S E+AR P RNV W A+I+G A EA++LF M R L P+
Sbjct: 184 SSPEEARRAFAAAPARNV------TMWTAVISGHGQHGRAAEALALFDRMTRVDGLRPND 237
Query: 151 LTVRSLLCACTSPSNV 166
+T ++L AC V
Sbjct: 238 VTFLAVLSACAHAGLV 253
>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 684
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 78/150 (52%), Gaps = 9/150 (6%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+QN + E FLQ + ++S C+ L L+LGR VH + + + ++
Sbjct: 287 VQN-HEEERACMVFLQARKEVEPTDFMISSVLSACAELGGLELGRSVHALAVKACVEDNI 345
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ + +++MYGKCGS+E+A V E+P+RN L +WNA+I G A + + A+ LF
Sbjct: 346 FVGSALVDMYGKCGSIENAEQVFSELPERN------LVTWNAMIGGYAHQGDIDMALRLF 399
Query: 139 SEMR--DRELIPDGLTVRSLLCACTSPSNV 166
EM + P +T+ S+L C+ V
Sbjct: 400 EEMTLGSHGIRPSYVTLISILSVCSRVGAV 429
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 13/161 (8%)
Query: 3 RNLKTQLRFTFYNSQPIQNLYN-EALVAF-DFLQNNTNFRIRPSTYACLISTCSSLRSLQ 60
RNL T + Y S +Q+ + +A+VAF +FL + T+ ++ C + L
Sbjct: 172 RNLAT---WNAYISNAVQDRRSLDAIVAFKEFL--CVHGEPNSITFCAFLNACVDMVRLN 226
Query: 61 LGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNA 120
LGR++H I+ + DV + N +++ YGKCG + A +V + + R ++ SW +
Sbjct: 227 LGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRK-----NVVSWCS 281
Query: 121 IIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++A + A +F + R +E+ P + S+L AC
Sbjct: 282 MLAALVQNHEEERACMVFLQAR-KEVEPTDFMISSVLSACA 321
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Query: 2 IRNLKTQLRFTFYNSQPIQNL-YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQ 60
+ +L+T + +T S + N + AL+ F ++ + N + T+ C+ + ++
Sbjct: 67 LTHLRTVVTWTSLISGCVHNRRFLPALLHFTNMRRD-NVQPNDFTFPCVFKASAFVQIPM 125
Query: 61 LGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNA 120
G+++H L DV + +MY K G DA + DEMPQRN LA+WNA
Sbjct: 126 TGKQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRN------LATWNA 179
Query: 121 IIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I+ + +A+ F E P+ +T + L AC
Sbjct: 180 YISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNACV 220
Score = 39.3 bits (90), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 61 LGRKVHDHILSSKSQP-DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
LGR +H HI+ + P L N+++NMY K L A+ V R V+ +W
Sbjct: 24 LGRTIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLTHLRTVV------TWT 77
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
++I+G A+ F+ MR + P+ T
Sbjct: 78 SLISGCVHNRRFLPALLHFTNMRRDNVQPNDFT 110
>gi|224126355|ref|XP_002329533.1| predicted protein [Populus trichocarpa]
gi|222870242|gb|EEF07373.1| predicted protein [Populus trichocarpa]
Length = 693
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 6/123 (4%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
STYA L ++ L GR++H+ ++ + S D++L N +++MY KCG + DA +
Sbjct: 423 STYAILFGAAGAIAHLDFGRQLHNMLMKTLSDCDLILSNSLISMYAKCGEIHDAYSIFTN 482
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
M R DL SWN +I G+A + ANE + +F M P+ +T +L AC+
Sbjct: 483 MIYR------DLISWNTMIMGLAHHALANETLKVFETMLQSGTRPNSVTFLGILSACSHA 536
Query: 164 SNV 166
V
Sbjct: 537 GLV 539
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+ ++V N +L+ Y +CG L +AR + +EMP+RNV+ SW +++ G+A EA
Sbjct: 61 ERNIVSYNVMLSGYLQCGRLSEARGLFEEMPERNVV------SWTSMLCGLADAGRICEA 114
Query: 135 MSLFSEMRDRELIPDGLTVRSLL 157
LF EM +R ++ V L+
Sbjct: 115 RELFKEMPERNVVSWNAMVAGLI 137
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 73 KSQPD--VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN 130
K P+ VV N ++ K LE+AR V DE+P++NV+ SWNA+I G A
Sbjct: 119 KEMPERNVVSWNAMVAGLIKNEDLEEARRVFDEIPEKNVV------SWNAMIKGFAENGK 172
Query: 131 ANEAMSLFSEMRDRELI 147
EA LF EM DR +I
Sbjct: 173 MEEARVLFEEMEDRNVI 189
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 30/130 (23%)
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIE------- 111
L+ R+V D I + +VV N ++ + + G +E+ARV+ +EM RNVI
Sbjct: 142 LEEARRVFDEI----PEKNVVSWNAMIKGFAENGKMEEARVLFEEMEDRNVITWTTMIAG 197
Query: 112 ------------------SPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE-LIPDGLT 152
++ SW A+I+G EA+ LF EM+ R + P+G T
Sbjct: 198 YCRIGDVREAYCFFCRIPERNVVSWTAMISGFTWNGYYGEALLLFLEMKRRSNIAPNGET 257
Query: 153 VRSLLCACTS 162
SL AC
Sbjct: 258 FISLAYACAG 267
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 46/180 (25%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVH---------------- 66
Y EAL+ F ++ +N T+ L C+ +R LG+++H
Sbjct: 235 YGEALLLFLEMKRRSNIAPNGETFISLAYACAGMRFHHLGKQLHAQLIINGLEYEDYDGR 294
Query: 67 -----------------DHILSSKSQPDVVLQ--NYILNMYGKCGSLEDARVVSDEMPQR 107
H + +K+ +Q N+++N Y + G +E AR + D +P R
Sbjct: 295 IAKSLIHMYSLFGAMDYAHYVFNKNLNSHAVQSCNHMINGYTRIGQVEKARELFDTIPAR 354
Query: 108 NVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP-----DGLTVRSLLCACTS 162
+ I +W ++I G N +EA LF M D++ + GL L TS
Sbjct: 355 DNI------TWTSMIVGYFDIGNVSEACYLFENMPDKDSVAWTSMISGLVQNELFLKATS 408
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 55 SLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPD 114
S + LQ R + D + +L Y + G ++++RV+ D MP+RN++
Sbjct: 10 SQQKLQQARNLLDKFPERSRHSRIAHWTSLLTKYSRIGFIDESRVLFDIMPERNIV---- 65
Query: 115 LASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
S+N +++G +EA LF EM +R ++ + S+LC +
Sbjct: 66 --SYNVMLSGYLQCGRLSEARGLFEEMPERNVV----SWTSMLCGLADAGRI 111
>gi|414885389|tpg|DAA61403.1| TPA: hypothetical protein ZEAMMB73_616465 [Zea mays]
Length = 506
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 68/116 (58%), Gaps = 10/116 (8%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHI-LSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
C + C+ L L+LGR VH + L + V+L N +++MY KCG++EDA + MP
Sbjct: 251 GCANAACAELGDLELGRWVHARVDLEGWQRRTVLLDNALIHMYVKCGAVEDAHRLFGMMP 310
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+R+ + SW +I+G+A + EA+ LF M+DR PDG T+ ++L AC+
Sbjct: 311 RRSSV------SWTTMISGLAMHGHPQEALDLFQRMQDR---PDGATLLAVLRACS 357
>gi|224054634|ref|XP_002298341.1| predicted protein [Populus trichocarpa]
gi|222845599|gb|EEE83146.1| predicted protein [Populus trichocarpa]
Length = 429
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 86/154 (55%), Gaps = 11/154 (7%)
Query: 16 SQPIQNLYNEALVAFDFLQN--NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK 73
S +QN NEA AFD + F +T + +++ C+++ +++ GR++H + + +
Sbjct: 154 SGLVQNFRNEA--AFDAFKQMLGRGFLPTSATISTVLAACATMANVRRGREIHGYAVVIR 211
Query: 74 SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
+ D+ +++ +++MY KCG + +A V+ MP+RN + +WN++I G A+ +E
Sbjct: 212 VEDDIYVRSALVDMYAKCGFISEASVLFYMMPERNTV------TWNSMIFGYANHGYCDE 265
Query: 134 AMSLFSEMRDRELIP-DGLTVRSLLCACTSPSNV 166
A+ LF +M E D LT ++L AC+ V
Sbjct: 266 AIELFDQMEKSEGNKLDHLTFTAVLTACSHAGMV 299
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 10/122 (8%)
Query: 36 NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
N + PS C C + +Q GR +H IL + DV + + +++MY KCG +E
Sbjct: 7 GANKFVIPSVLKC----CGHVYDVQTGRILHSVILKYSIESDVYVISSLIDMYSKCGEVE 62
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
AR V D M ++ DL + NA+++G A E +L +M + P+ +T S
Sbjct: 63 KARRVFDRMVEK------DLVALNAMLSGYGQHGFAKEGFALMDKMEKLGIKPNVITWNS 116
Query: 156 LL 157
L+
Sbjct: 117 LI 118
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSD-EMPQRNVIESPDLASWNAIIAGVASPSNANE 133
+P+V+ N +++ + + G +DA V E+ N +E PD+ SW ++I+G+
Sbjct: 108 KPNVITWNSLISGFAQKG--DDAMVSKMFELMISNGVE-PDVISWTSVISGLVQNFRNEA 164
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
A F +M R +P T+ ++L AC + +NV
Sbjct: 165 AFDAFKQMLGRGFLPTSATISTVLAACATMANV 197
>gi|125563703|gb|EAZ09083.1| hypothetical protein OsI_31349 [Oryza sativa Indica Group]
Length = 503
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P+T+ ++S + L +L LG+ H ++S + + L +NMY KCG++ A + +
Sbjct: 208 PTTFVVMLSAAAELGNLALGKWAHGQVVSRRLDMTLQLGTAAVNMYSKCGAVSYALRLFE 267
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
MP RNV +W A+I G A A EA+ LF M+ ++IP+ +T LLCAC+
Sbjct: 268 RMPARNVW------TWTAMIVGFAQNGLAQEALELFDRMKLSKIIPNYVTFLGLLCACS 320
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + N ++ Y CG LE A V DEMP+R V+ SWN + A + + L
Sbjct: 142 VYVPNALMAAYSACGQLERAVQVFDEMPRRTVV------SWNTALTACAGNGHHELCVEL 195
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNV 166
F+EM + +PD T +L A N+
Sbjct: 196 FAEMLEAGSVPDPTTFVVMLSAAAELGNL 224
>gi|297827165|ref|XP_002881465.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327304|gb|EFH57724.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 507
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 8/123 (6%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
RI+P+ T+ L+ C+S L GR++ +L DV + N ++++YG C DA
Sbjct: 108 RIKPNKLTFPFLLKACASFLGLTAGRQIQVEVLKHGFDSDVYVGNNLIHLYGSCKKTSDA 167
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R V DEM +RNV+ SWN+I+ + N + F EM R+ PD T+ LL
Sbjct: 168 RKVFDEMTERNVV------SWNSIMTALVENGKFNLVVECFFEMIGRQFCPDETTMVVLL 221
Query: 158 CAC 160
AC
Sbjct: 222 SAC 224
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 9/124 (7%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T L+S C +L LG+ VH ++ + + + L +++MY K G L+ AR+V +
Sbjct: 215 TTMVVLLSACGG--NLSLGKLVHSQVMVRELELNCRLGTALVDMYAKSGGLKYARLVFER 272
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE-MRDRELIPDGLTVRSLLCACTS 162
M +NV +W+A+I G+A A EA+ LFS+ M++ + P+ +T +LCAC+
Sbjct: 273 MADKNV------WTWSAMIVGLAQYGFAEEALQLFSKMMKESSVRPNYVTFLGVLCACSH 326
Query: 163 PSNV 166
V
Sbjct: 327 TGLV 330
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 13/126 (10%)
Query: 41 IRPSTYACLI--STCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ + CLI CSS++ L ++H I S Q D ++I++ + SL +
Sbjct: 9 FKSKKHQCLIFLKLCSSIKHLL---QIHGQIHVSSLQND----SFIISELIRVSSLSHTK 61
Query: 99 VVSDEMPQRNVIESPDL--ASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
++ + ++ S D ++WN + G +S E++ ++SEM+ R + P+ LT L
Sbjct: 62 DLA--FARTLLLHSSDSTPSTWNMLTRGYSSSDTPVESIWVYSEMKRRRIKPNKLTFPFL 119
Query: 157 LCACTS 162
L AC S
Sbjct: 120 LKACAS 125
>gi|255538308|ref|XP_002510219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550920|gb|EEF52406.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1113
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 69/117 (58%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A L+S CS L LQ G ++H +IL +K + + + +++MY KCGS+ A V
Sbjct: 842 TIASLLSGCSQLGYLQFGERLHSYILRNKLEMEDFVGTALIHMYTKCGSIVHAERVFKS- 900
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I P LA+WNA+I+G + ++A++ +SEM+++ + PD +T +L ACT
Sbjct: 901 -----IGKPCLATWNAMISGYSCYGFEHKALTCYSEMQEQGVEPDKITFLGVLAACT 952
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
F R +T L+ +C L + G+ +H + S D ++N + +MY KCG LE A
Sbjct: 538 GFCPRQTTLVGLLPSCGQLELVFQGKSIHGFGIKSGLHLDPQVKNALTSMYAKCGDLEAA 597
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+ +EM ++V+ SWN +I +EAM +F M + +T+ SL
Sbjct: 598 EYLFEEMMDKSVV------SWNTMIGAYGQNGFFDEAMFVFKRMIGAGVEVSQVTIMSLP 651
Query: 158 CACTSPSNV 166
A +P ++
Sbjct: 652 SANANPESI 660
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 61 LGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNA 120
+G H + + S ++ N +++MY K ++E + M ++ +I SWN+
Sbjct: 757 IGHVFHGYAIKSGLDTFNLVTNGLISMYSKFNNVEALFGLFSGMHEKPLI------SWNS 810
Query: 121 IIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+I+G A+ A+ LF +M+ PD +T+ SLL C+
Sbjct: 811 VISGCVQAGRASHAIELFCQMKMHGCNPDAITIASLLSGCS 851
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 64 KVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIA 123
++ +H++ V + +L++Y K G + A D MP R+V+ SWNA+I
Sbjct: 463 QIQNHLIKRGIDQFVYVSTALLDLYMKLGRVSYAHNAFDYMPIRDVV------SWNALIC 516
Query: 124 GVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
G + A+ LF +M P T+ LL +C
Sbjct: 517 GYSRNGYDFSALELFVQMLKLGFCPRQTTLVGLLPSC 553
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 65 VHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124
+H + + D + ++ MY + GS + A ++ +PQ+N L S AII
Sbjct: 660 IHCYTIKVGLADDASVVTSLICMYARYGSTDHAELLYWSLPQKN------LVSLTAIITS 713
Query: 125 VASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
A N M FS+M + PD + + S+L P ++
Sbjct: 714 YAEAGNLGLVMESFSQMHQLNMKPDSVAMLSILHGIADPVHI 755
>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 7/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C+ + G++VH I+ DV + N ++++YG CG L+ AR V DEM
Sbjct: 144 TFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEM 203
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P+R+ L SWN++I + + A+ LF EM+ R PDG T++S+L AC
Sbjct: 204 PERS------LVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAG 254
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 73/143 (51%), Gaps = 13/143 (9%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS---KSQPDVV 79
Y+ AL F +Q + F T ++S C+ L SL LG H +L DV+
Sbjct: 224 YDSALQLFREMQRS--FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVL 281
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
++N ++ MY KCGSL A V M +R DLASWNA+I G A+ A EAM+ F
Sbjct: 282 VKNSLIEMYCKCGSLRMAEQVFQGMQKR------DLASWNAMILGFATHGRAEEAMNFFD 335
Query: 140 EMRDRE--LIPDGLTVRSLLCAC 160
M D+ + P+ +T LL AC
Sbjct: 336 RMVDKRENVRPNSVTFVGLLIAC 358
>gi|115469032|ref|NP_001058115.1| Os06g0625800 [Oryza sativa Japonica Group]
gi|51535726|dbj|BAD37743.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113596155|dbj|BAF20029.1| Os06g0625800 [Oryza sativa Japonica Group]
Length = 433
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
TYA L+ C + R ++G+++H ++S V + +L Y K G L AR V D
Sbjct: 36 GTYALLLQECVNRRDARMGKRIHARMVSVGFGGGVYIVTKLLIFYVKIGELGVARKVFDG 95
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
MPQR+V+ +WNA+I+G A A+ +F MR + PD T S+LCAC
Sbjct: 96 MPQRSVV------AWNAMISGCARGGAEARAVEMFGSMRAEGMRPDQFTFASVLCACA 147
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 69/130 (53%), Gaps = 10/130 (7%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSK-SQPDVVLQNYILNMYGKCGSLEDA 97
+RP T+A ++ C+ L +L+ GR+VH ++ S+ +V + + +++MY KC S E+A
Sbjct: 132 MRPDQFTFASVLCACARLAALEHGRRVHGVMVKSRVGGGNVFVDSALVDMYLKCSSPEEA 191
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSL 156
R P RNV W A+I+G A EA++LF M R L P+ +T ++
Sbjct: 192 RRAFAAAPARNVT------MWTAVISGHGQHGRAAEALALFDRMTRVDGLRPNDVTFLAV 245
Query: 157 LCACTSPSNV 166
L AC V
Sbjct: 246 LSACAHAGLV 255
>gi|28564593|dbj|BAC57760.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50509708|dbj|BAD31746.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 703
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 64/121 (52%), Gaps = 11/121 (9%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+AL A+ + N + P TY ++ C+ R L LGR VH H + ++ QN
Sbjct: 156 QALAAYQEMGKNG---VLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFFQN 212
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG L AR V D M QR+V+ SWN++I+ A+ EAM LF MR
Sbjct: 213 ALMSMYAKCGDLASARKVFDGMVQRDVV------SWNSMISSYAAVGQWAEAMELFRRMR 266
Query: 143 D 143
D
Sbjct: 267 D 267
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ C+ + +LQ G+++H HI+ + +L N +++MY K G L A+ V D M
Sbjct: 412 TVVTYLALCARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTM 471
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+ D+ S+ ++IAG A+ LF +M D + PD + + ++L AC+
Sbjct: 472 ------DDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSG 525
Query: 165 NVL 167
VL
Sbjct: 526 LVL 528
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 10/119 (8%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVV--LQNYILNMYGKCGSLEDARVVSDEMPQR 107
++ CS + L+LG+++H L+ + D V + N ++ MY +C +E AR++
Sbjct: 316 LNACSRVGWLRLGKEIHG--LAVRMCCDQVESVSNALITMYARCKDMECARMLF------ 367
Query: 108 NVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
++E P + +WN +++ A A EA S+F EM R + P+ +TV + L C +N+
Sbjct: 368 RMLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGVKPNYVTVVTYLALCARVANL 426
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 25/148 (16%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
S +A L+ +C +S R++H I+ ++ ++ +QN +++ YGKCG EDAR V D
Sbjct: 20 SPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDR 79
Query: 104 MPQRNV-------------------------IESPDLASWNAIIAGVASPSNANEAMSLF 138
MPQRN + PD SWNA+++G A EA+ F
Sbjct: 80 MPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFF 139
Query: 139 SEMRDRELIPDGLTVRSLLCACTSPSNV 166
+M + + + + S L AC +++
Sbjct: 140 VDMHSEDFVLNEYSFGSALSACAGLTDL 167
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 75/148 (50%), Gaps = 12/148 (8%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHIL------SSK 73
QN NE V L + T+ L++ C++L L+LGR+ H IL S
Sbjct: 362 QNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSG 421
Query: 74 SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
+ D+ + N +++MY KCG +ED +V + M +R+V+ SWNA+I G A
Sbjct: 422 EESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVV------SWNAMIVGYAQNGYGTN 475
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACT 161
A+ +F +M PD +T+ +L AC+
Sbjct: 476 ALEIFRKMLVSGQKPDHVTMIGVLSACS 503
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 31/170 (18%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILS-SKSQPDVVLQ 81
+AL F + +N + P T A ++S C+S +++ G ++H ++ K + D+VL
Sbjct: 235 KALEVFVMMMDNG---VEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLG 291
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIE-------------------------SPDLA 116
N +++MY KC + +AR+V D MP RNV+ ++
Sbjct: 292 NALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVV 351
Query: 117 SWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
SWNA+IAG EA+ LF ++ + P T +LL AC + +++
Sbjct: 352 SWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADL 401
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 75/144 (52%), Gaps = 7/144 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ EAL F + + +F + ++ +S C+ L L +G ++H I S+ DV + +
Sbjct: 132 FEEALRFFVDMHSE-DFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGS 190
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG + A+ D M RN++ SWN++I A +A+ +F M
Sbjct: 191 ALVDMYSKCGVVACAQRAFDGMAVRNIV------SWNSLITCYEQNGPAGKALEVFVMMM 244
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
D + PD +T+ S++ AC S S +
Sbjct: 245 DNGVEPDEITLASVVSACASWSAI 268
>gi|302788029|ref|XP_002975784.1| hypothetical protein SELMODRAFT_150748 [Selaginella moellendorffii]
gi|300156785|gb|EFJ23413.1| hypothetical protein SELMODRAFT_150748 [Selaginella moellendorffii]
Length = 590
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 81/147 (55%), Gaps = 12/147 (8%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
NEA + F+ +++ IRP+ CL + CS L G+KVH +I +S+ + D+ LQ
Sbjct: 23 NEAFLLFERMESEG---IRPNAVTCLHVLGACSCQNELPFGKKVHAYISASEFKWDISLQ 79
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
++NMY KCG+LE AR V + + +++VI SW+ +I+ +EA+ ++ M
Sbjct: 80 TSLVNMYAKCGNLEGARKVFNRLERKDVI------SWSTMISAYNQSGRHSEAIEIYRLM 133
Query: 142 RDRELI-PDGLTVRSLLCACTSPSNVL 167
+ P+ +T ++ ACT +V+
Sbjct: 134 ESETSVEPNAVTFVGVIGACTGCGDVI 160
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 69/123 (56%), Gaps = 8/123 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I+P+ TY ++S CSSL ++ GRK+H + + DV +QN +L++Y +CGSL DA
Sbjct: 373 IKPNSVTYTSVLSACSSLGNILEGRKIHSSLEGKAEELDVAVQNSLLSLYARCGSLRDAW 432
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
++ R+V SW ++A A ++ A+ L EM + PD +T +S+L
Sbjct: 433 SCFAKIHNRDVF------SWTGMVAAFAHHGHSARALELVREMELCGVSPDAVTFQSVLH 486
Query: 159 ACT 161
AC+
Sbjct: 487 ACS 489
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 68/157 (43%), Gaps = 39/157 (24%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSS-------------------------------- 72
TY ++ CS++ L G+KVH I+SS
Sbjct: 243 TYTNVLIACSAMEDLAQGQKVHSRIVSSGLETDMTMETSLLSLYIKCRSLKSACQVFEAM 302
Query: 73 -KSQPDVVLQNYILNMYGKCGSLEDA-RVVSDEMPQRNVIESPDLASWNAIIAGVASPSN 130
K DVV +LNMY CG+LE A RV +R D+ W A+IA A
Sbjct: 303 GKKDTDVVTDTALLNMYAACGNLEAAKRVFGSRRDERR-----DVVFWTAMIASYAQAGR 357
Query: 131 ANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
EA++L+ M E+ P+ +T S+L AC+S N+L
Sbjct: 358 GEEALALYKTMLSEEIKPNSVTYTSVLSACSSLGNIL 394
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 75/140 (53%), Gaps = 9/140 (6%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
++EA+ + +++ T+ T+ +I C+ + GR+VH ++S + DV + +
Sbjct: 123 HSEAIEIYRLMESETSVEPNAVTFVGVIGACTGCGDVIRGRQVHGRLVSLGLETDVAVGS 182
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++ +Y KCG+LEDA+ D + +R+V+ WN +++ + + + + + M
Sbjct: 183 ALVQLYVKCGNLEDAKKAFDRVEKRDVL------CWNFMLSAYSERGSPQQVIEAYDAM- 235
Query: 143 DRELIPDGLTVRSLLCACTS 162
++ P+ +T ++L AC++
Sbjct: 236 --DVEPNAVTYTNVLIACSA 253
>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g59720, mitochondrial; Flags: Precursor
gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 7/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C+ + G++VH I+ DV + N ++++YG CG L+ AR V DEM
Sbjct: 153 TFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEM 212
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P+R+ L SWN++I + + A+ LF EM+ R PDG T++S+L AC
Sbjct: 213 PERS------LVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAG 263
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 73/143 (51%), Gaps = 13/143 (9%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS---KSQPDVV 79
Y+ AL F +Q + F T ++S C+ L SL LG H +L DV+
Sbjct: 233 YDSALQLFREMQRS--FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVL 290
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
++N ++ MY KCGSL A V M +R DLASWNA+I G A+ A EAM+ F
Sbjct: 291 VKNSLIEMYCKCGSLRMAEQVFQGMQKR------DLASWNAMILGFATHGRAEEAMNFFD 344
Query: 140 EMRDRE--LIPDGLTVRSLLCAC 160
M D+ + P+ +T LL AC
Sbjct: 345 RMVDKRENVRPNSVTFVGLLIAC 367
>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
Length = 920
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 7/140 (5%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
LY +AL+ F + T+ IS ++L ++ G++VH + + + +
Sbjct: 528 LYKQALMVF-MKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVA 586
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++++YGKCGS+EDA+++ EM RN + SWN II + EA+ LF +M
Sbjct: 587 NALISLYGKCGSIEDAKMIFSEMSLRNEV------SWNTIITSCSQHGRGLEALDLFDQM 640
Query: 142 RDRELIPDGLTVRSLLCACT 161
+ L P+ +T +L AC+
Sbjct: 641 KQEGLKPNDVTFIGVLAACS 660
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
+F+ I P+ TY C++ TC+ ++LG ++H + + + D+ + +++
Sbjct: 330 SFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLID 389
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY K G L+ AR + + + +R+V+ SW ++IAG EA++ F EM+D +
Sbjct: 390 MYSKYGCLDKARKILEMLEKRDVV------SWTSMIAGYVQHDFCEEALATFKEMQDCGV 443
Query: 147 IPDGLTVRSLLCACTS 162
PD + + S AC
Sbjct: 444 WPDNIGLASAASACAG 459
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 72/143 (50%), Gaps = 11/143 (7%)
Query: 26 ALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
AL FD +Q + +RP T A L++ C+S+ LQ G+++H ++L + D + +
Sbjct: 229 ALQIFDEMQLSG---LRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGS 285
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+L++Y KCG +E A + + + NV+ WN ++ S+ ++ +F +M+
Sbjct: 286 LLDLYVKCGDIETAHDIFNLGDRTNVV------LWNLMLVAYGQISDLAKSFEIFGQMQA 339
Query: 144 RELIPDGLTVRSLLCACTSPSNV 166
+ P+ T +L CT +
Sbjct: 340 TGIHPNQFTYPCILRTCTCTGQI 362
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ EAL F +Q+ + P A S C+ +++++ G ++H + S D
Sbjct: 425 HDFCEEALATFKEMQDCG---VWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAAD 481
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ + N ++N+Y +CG E+A + E IE D +WN +I+G +A+ +
Sbjct: 482 ISIWNTLVNLYARCGRSEEAFSLFRE------IEHKDEITWNGLISGFGQSRLYKQALMV 535
Query: 138 FSEM 141
F +M
Sbjct: 536 FMKM 539
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA-RVVS 101
P + ++S C+ + GR +H + + + N ++ +Y GS + A RV
Sbjct: 144 PYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFC 203
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
D + D ++N +I+G A + A+ +F EM+ L PD +TV SLL AC
Sbjct: 204 DML-------FCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACA 256
Query: 162 SPSNV 166
S ++
Sbjct: 257 SVGDL 261
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
D ++ N ++++Y K G + AR V E+ R D SW A+++G A EA
Sbjct: 76 ADRLIGNLLIDLYAKNGLVWQARQVFKELSSR------DHVSWVAMLSGYAQSGLGKEAF 129
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACT 161
L+S+M +IP + S+L ACT
Sbjct: 130 RLYSQMHWTAVIPTPYVLSSVLSACT 155
>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 596
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 4/116 (3%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY L+ C+ L +L+ G +H + V ++N +++ YG CG E A V DE+
Sbjct: 122 TYPPLLQACTRLLALREGESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEI 181
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P V+E +L SWN+++ G A+ NE +++F E + +L+PDG T+ S+L AC
Sbjct: 182 P---VLER-NLVSWNSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTAC 233
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 11/120 (9%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQ--PDVVLQNYILNMYGKCGSLEDARVVSD 102
T +++ C+ + +L LGR+VH + +SK + + N ++++Y KCG +EDA V +
Sbjct: 225 TIVSVLTACAEIGALTLGRRVH--VFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFE 282
Query: 103 EMP-QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
EM R V+ SW ++I G+A +A+ LF M LIP +T+ +L AC+
Sbjct: 283 EMGVARTVV------SWTSLIVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYACS 336
>gi|255585042|ref|XP_002533229.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526949|gb|EEF29150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 575
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P T ++S C+ L +L LG+ +H + + +V + +++MY KCGS+ +AR + D
Sbjct: 419 PVTVTSILSACAQLGALTLGKWIHGLVKFKSFEYNVYVSTALIDMYAKCGSILEARRLFD 478
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
MP++N + +WNAII+G EA+ LF EM + + P +T S+L AC+
Sbjct: 479 SMPEKNEV------TWNAIISGYGLHGLGQEALKLFYEMLNCGIQPTRVTFLSVLYACS 531
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
++ S+ LI L L +H + S + + +Y + +E AR
Sbjct: 315 KVNSSSIVGLIPVYCPFGYLPLTNCIHGFGVKSGIVSHSSVATALTTVYSRLNEMEAARQ 374
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ DE ++ LASWNA+IAG +A+SLF EM+ + P+ +TV S+L A
Sbjct: 375 LFDESSEKT------LASWNAMIAGYTQNGATEKAISLFQEMQMYNISPNPVTVTSILSA 428
Query: 160 C 160
C
Sbjct: 429 C 429
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/121 (19%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y +++ F ++ + + +T ++ + L+ L+LG ++ + + +
Sbjct: 197 YEDSIRLFKYMISGNGPQFDSTTVLAVLPALAELQELRLGTEIQCLAIKLGFLSHISVVT 256
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++++Y KCG ++ A ++ ++ ++ DL S+NA+I+G+ ++ LF E
Sbjct: 257 GLISLYSKCGDVDTASILFTDIGRK------DLISYNAMISGLTFNGETESSVRLFEEWL 310
Query: 143 D 143
D
Sbjct: 311 D 311
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 26 ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
A+ F L+ +T+ TYA ++S + ++G +H ++ D+ + + ++
Sbjct: 98 AISLFTHLRKSTDLYPDNFTYAFVVSAARNFGDAKIGFSLHGRVIVDGLSSDLFVGSALV 157
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+MY K + A V D++P+R+ I +N +I+G+ +++ LF M
Sbjct: 158 DMYFKLSREDIALKVFDKLPERDTIL------YNTMISGLVRVCCYEDSIRLFKYM 207
>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
1
gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 684
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 69/120 (57%), Gaps = 8/120 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++S C+ + L+LGR +H H + + + + + + +++MYGKCG +ED+ DEMP++N
Sbjct: 316 VLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKN 375
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL--IPDGLTVRSLLCACTSPSNV 166
++ + N++I G A + A++LF EM R P+ +T SLL AC+ V
Sbjct: 376 LV------TRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAV 429
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSS-KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQR 107
L+ S S++LGR VH I+ + S P L NY++NMY K E AR+V P R
Sbjct: 12 LLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPAR 71
Query: 108 NVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
NV+ SW ++I+G+A + + A+ F EMR ++P+ T
Sbjct: 72 NVV------SWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFT 110
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ C +SLR G+++H + DV + +MY K +DAR + DE+
Sbjct: 110 TFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEI 169
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P+RN L +WNA I+ + EA+ F E R + P+ +T + L AC+
Sbjct: 170 PERN------LETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACS 220
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 15/167 (8%)
Query: 3 RNLKTQLRF---TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSL 59
RNL+T F + + +P + + EA + F + + N T+ ++ CS L
Sbjct: 172 RNLETWNAFISNSVTDGRPREAI--EAFIEFRRIDGHPN----SITFCAFLNACSDWLHL 225
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
LG ++H +L S DV + N +++ YGKC + + ++ EM +N + SW
Sbjct: 226 NLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAV------SWC 279
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+++A +A L+ R + + S+L AC + +
Sbjct: 280 SLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGL 326
>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25970-like [Vitis vinifera]
Length = 829
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 8/135 (5%)
Query: 29 AFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A F +N + + YA ++ +CS L +LQLG++VH +L S +P+ + + ++
Sbjct: 390 ALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIF 449
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG +EDAR D P+ + I +WN++I G A A+ LF M+DR +
Sbjct: 450 MYSKCGVIEDARKSFDATPKDSSI------AWNSLIFGYAQHGRGKIALDLFFLMKDRRV 503
Query: 147 IPDGLTVRSLLCACT 161
D +T ++L AC+
Sbjct: 504 KLDHITFVAVLTACS 518
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 5/126 (3%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
I T+A L++ +L +VH I+ D + N I+ Y +CGS+EDA
Sbjct: 198 EIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAER 257
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V D IE+ DL +WN+++A + EA LF EM+ PD T S++ A
Sbjct: 258 VFD-----GAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISA 312
Query: 160 CTSPSN 165
S+
Sbjct: 313 AFEGSH 318
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
Query: 29 AFDFLQN--NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A +FL++ F + ++ ++ + + +++G++VH ++ + +V + +L+
Sbjct: 84 ALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLD 143
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS--EMRDR 144
MY KC +EDA V + RN + +WNA+I+G A + A L E+
Sbjct: 144 MYAKCERVEDAFEVFKSINIRNSV------TWNALISGYAQVGDRGTAFWLLDCMELEGV 197
Query: 145 ELIPDG 150
E I DG
Sbjct: 198 E-IDDG 202
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Query: 67 DHILSSKS--QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124
+H L+ KS + N I++ Y KCG + A + E QR D SWN +IAG
Sbjct: 21 NHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQR------DAVSWNTMIAG 74
Query: 125 VASPSNANEAMSLFSEMRDRELIPDGLTVRSLL--CACTSPSNV 166
+ N A+ M+ DG + S+L AC V
Sbjct: 75 FVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEV 118
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY +IS G+ +H ++ + V + N ++ MY K S + + + +
Sbjct: 305 TYTSVISAAFEGSHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHS----KSMDEAL 360
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+E+ D SWN+I+ G + + +A+ F MR + ++ D ++L +C+
Sbjct: 361 NIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCS 417
>gi|357158377|ref|XP_003578109.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Brachypodium distachyon]
Length = 496
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 6/148 (4%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+ N Y+ V F +T+ C++S + L +L LG+ H +++ + +
Sbjct: 178 VDNDYHSGCVGLFSAMVEAGFHPDQTTFVCMMSAAAELGNLPLGKWAHGQVVARRLDMTL 237
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
L +NMY KCG + AR + + MP NV +W+A+I G A A EA+ LF
Sbjct: 238 QLGTATVNMYAKCGMVSYARRLFERMPAWNVW------TWSAMIMGFAQNGLAWEALKLF 291
Query: 139 SEMRDRELIPDGLTVRSLLCACTSPSNV 166
M+ + P+ +T LLCAC+ V
Sbjct: 292 ERMKGASIAPNYVTFLGLLCACSHAGLV 319
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V ++N ++ Y CG L A V DEMP+R V+ SWN + + + L
Sbjct: 136 VYVRNALMAAYSSCGHLAGAIQVFDEMPRRTVV------SWNTALTACVDNDYHSGCVGL 189
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNV 166
FS M + PD T ++ A N+
Sbjct: 190 FSAMVEAGFHPDQTTFVCMMSAAAELGNL 218
>gi|147771209|emb|CAN67545.1| hypothetical protein VITISV_030949 [Vitis vinifera]
Length = 598
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 6/118 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
LIS C++ R L +G+ VH I S + + + ++NMY KCGS+E R V DE+ N
Sbjct: 253 LISACTNXRDLHMGKAVHAFIKVSGMEMMIHFETALINMYSKCGSIELGRKVFDELADEN 312
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+ ASWN++I G EA+SL++ ++ R++ PD +T+ L+ AC S ++
Sbjct: 313 I------ASWNSMIYGYVECGFNIEALSLWNVIQSRKIKPDEVTMLGLISACRSSGDL 364
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 12/139 (8%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQ 81
EAL ++ +Q+ +I+P T LIS C S L G +++ +I SS VL
Sbjct: 331 EALSLWNVIQSR---KIKPDEVTMLGLISACRSSGDLHQGIQINSYIESSDHLSGSTVLC 387
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N +++MY KCGS++ A V +MP+R+VI SW +II G A EA+ F +M
Sbjct: 388 NALIDMYAKCGSMDRAETVFSKMPRRDVI------SWTSIIVGYAINGEGEEALLAFRKM 441
Query: 142 RDRELIPDGLTVRSLLCAC 160
++ P+ +T +L AC
Sbjct: 442 GAEKIEPNSVTFLGVLSAC 460
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 38 NFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
+ R++P+ T LIS C +G +H + + ++N ++++Y + ++
Sbjct: 139 DLRVKPNYVTLVILISGCVEFGRFSIGNSLHSYCCKTSLDLKNEVRNALIHLYAEFEYMD 198
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
A + E R DL SWN +IAG A ++ A SLF EMR + D +++ S
Sbjct: 199 AAAKLFHETNVR------DLVSWNTMIAGYAKNNDCRNAFSLFREMRIGNVECDRVSLVS 252
Query: 156 LLCACTS 162
L+ ACT+
Sbjct: 253 LISACTN 259
Score = 39.7 bits (91), Expect = 0.45, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC-GSLEDARVVSDEM 104
YA LI C+ L +++ GR +H H+L +V + N ++ +Y S+ A + D++
Sbjct: 43 YASLIKACNRLSAIREGRSIHCHVLRFGLDYNVNVLNALVYLYSSAEKSMGCACALFDKI 102
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR----DRELIPDGLTVRSLLCAC 160
P++ ++ + N +I+G + + LF+ + D + P+ +T+ L+ C
Sbjct: 103 PEKTIV------TVNCMISGFVKNKRFHAGVGLFNRVLGGGFDLRVKPNYVTLVILISGC 156
>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Cucumis sativus]
Length = 667
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 72/123 (58%), Gaps = 8/123 (6%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
R+RP+ + + ++ CS+L +L LGR++H + S D +++MY KCG L+ A
Sbjct: 290 RVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSA 349
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+ EMP+++VI SWNA+I+G A +A+ LF +MR+ + PD +T +++
Sbjct: 350 WKLFLEMPRKDVI------SWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVI 403
Query: 158 CAC 160
AC
Sbjct: 404 LAC 406
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/173 (21%), Positives = 78/173 (45%), Gaps = 20/173 (11%)
Query: 2 IRNLKTQLRFTFYNSQPIQNLYNEALVAFDFLQNNTN------FRIRPS----TYACLIS 51
+R+ + F+N P++++ + + F QN F + P +++ +IS
Sbjct: 147 LRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMIS 206
Query: 52 TCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIE 111
L+ +++ ++ VV++ +L Y K G +E A + M +N
Sbjct: 207 GYVEHGDLEAAEELYKNV----GMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKN--- 259
Query: 112 SPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
L +WN++IAG A + + +F M + + P+ L++ S+L C++ S
Sbjct: 260 ---LVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLS 309
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+PD V N +L Y + +E A ++MP + D+ASWN +I+G A +A
Sbjct: 133 EPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVK------DIASWNTLISGFAQNGQMQKA 186
Query: 135 MSLFSEMRDR 144
LFS M ++
Sbjct: 187 FDLFSVMPEK 196
>gi|255558188|ref|XP_002520121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540613|gb|EEF42176.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 589
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 69/128 (53%), Gaps = 8/128 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
++P T+A +++ C+ L S++ G+++H H++ ++ DV + N ++NMY KCGS++++
Sbjct: 300 VKPDDFTFAGVLAACAGLASIRHGKQIHGHLIRTRQYQDVGVSNALVNMYAKCGSIKNSY 359
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V RN L SWN IIA + A+ F +M+ + PD +T LL
Sbjct: 360 DVFRRTSDRN------LVSWNTIIAAFGNHGLGARALEHFEKMKTVGIHPDSVTFVGLLT 413
Query: 159 ACTSPSNV 166
AC V
Sbjct: 414 ACNHAGLV 421
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P L+ C+ +++ G +H L + D+++ N+++N+Y KCG++ AR + D
Sbjct: 3 PEAIGSLLHHCAKIKAFLHGLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFD 62
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
EM RN L SW+AII+G A++LFS+MR ++P+ S++ AC S
Sbjct: 63 EMSDRN------LVSWSAIISGYDQTGQPLLALNLFSQMR---IVPNEYVFASVISACAS 113
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Query: 37 TNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSL 94
+ RI P+ Y A +IS C+SL +L G +VH L + N +++MY KCG
Sbjct: 93 SQMRIVPNEYVFASVISACASLTALSQGLQVHAQSLKLGCVSVSFVSNALISMYMKCGLC 152
Query: 95 EDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVR 154
DA +V NV+ P+ S+NA+IAG + + F MR + PD T
Sbjct: 153 TDALLV------HNVMSEPNAVSYNALIAGFVENQQPEKGIEAFKVMRQKGFAPDRFTFS 206
Query: 155 SLLCACTS 162
LL CTS
Sbjct: 207 GLLGICTS 214
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 13/153 (8%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS 74
N QP + + AF ++ F T++ L+ C+S G ++H ++
Sbjct: 180 NQQP-----EKGIEAFKVMRQK-GFAPDRFTFSGLLGICTSYDDFWRGMQLHCQMIKLNL 233
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+ + N I+ MY K +E+A V +I+ DL SWN ++ + A
Sbjct: 234 EDSAFIGNVIITMYSKFNLIEEAEKV------FGLIKEKDLISWNTLVTACCFCKDHERA 287
Query: 135 MSLFSEMRDRELI-PDGLTVRSLLCACTSPSNV 166
+ +F +M D + PD T +L AC +++
Sbjct: 288 LRVFRDMLDVCFVKPDDFTFAGVLAACAGLASI 320
>gi|222635914|gb|EEE66046.1| hypothetical protein OsJ_22034 [Oryza sativa Japonica Group]
Length = 425
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
TYA L+ C + R ++G+++H ++S V + +L Y K G L AR V D
Sbjct: 28 GTYALLLQECVNRRDARMGKRIHARMVSVGFGGGVYIVTKLLIFYVKIGELGVARKVFDG 87
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
MPQR+V+ +WNA+I+G A A+ +F MR + PD T S+LCAC
Sbjct: 88 MPQRSVV------AWNAMISGCARGGAEARAVEMFGSMRAEGMRPDQFTFASVLCACA 139
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 69/130 (53%), Gaps = 10/130 (7%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSK-SQPDVVLQNYILNMYGKCGSLEDA 97
+RP T+A ++ C+ L +L+ GR+VH ++ S+ +V + + +++MY KC S E+A
Sbjct: 124 MRPDQFTFASVLCACARLAALEHGRRVHGVMVKSRVGGGNVFVDSALVDMYLKCSSPEEA 183
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSL 156
R P RNV W A+I+G A EA++LF M R L P+ +T ++
Sbjct: 184 RRAFAAAPARNVT------MWTAVISGHGQHGRAAEALALFDRMTRVDGLRPNDVTFLAV 237
Query: 157 LCACTSPSNV 166
L AC V
Sbjct: 238 LSACAHAGLV 247
>gi|449438679|ref|XP_004137115.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15690-like [Cucumis sativus]
Length = 688
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+ L C +S + VHD+ L S + D+ L N +L MYG+CGS+ DAR V D MP
Sbjct: 346 FHLLFELCGKSKSFDNAKVVHDYFLQSSCRSDLQLNNEVLEMYGRCGSMSDARRVFDHMP 405
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
R++ SW+ ++ G A +E + LF M++ L P+ T ++ AC S
Sbjct: 406 DRSI------DSWHLMMKGYADNGLGDEGLELFENMKNLGLQPNSQTFLYVMSACAS 456
>gi|296090683|emb|CBI41082.3| unnamed protein product [Vitis vinifera]
Length = 413
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 7/149 (4%)
Query: 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILS 71
+ NSQ Q E++ F +++ I + + +I C L+ G+K+H +L
Sbjct: 72 AYLNSQNPQ----ESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLK 127
Query: 72 SKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNA 131
D+ ++ ++ MY K G +E AR + DEM ++ DL SWN +I G AS ++
Sbjct: 128 IGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDL---RDLVSWNTMIHGHASLGDS 184
Query: 132 NEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
NEA+ LF EM+ ++PD +T+ S+L AC
Sbjct: 185 NEALRLFHEMQLANVLPDKVTMVSVLSAC 213
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 60 QLGRKVHDHILSSKSQPD---VVLQNYILNMYGKCGSLED---ARVVSDEMPQRNVIESP 113
+L + + H L K+ D VL + ++ C S D AR V DE+P SP
Sbjct: 9 KLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFA-CSSANDLLYARSVFDEIP------SP 61
Query: 114 DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP-DGLTVRSLLCAC 160
D WN +I + N E+MSLF +MR +E IP D ++ ++ AC
Sbjct: 62 DTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQAC 109
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 13/133 (9%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
NEAL F +Q N T ++S C + +L +G+ +H+ I ++ + D+ L
Sbjct: 185 NEALRLFHEMQL-ANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTS 243
Query: 84 ILNMYGKCGSLEDA----RVVSDE--MPQRNVIESPDLASW---NAI---IAGVASPSNA 131
+++MY KCG ++++ +VV+ M N+ + P +S NA+ +AG S +
Sbjct: 244 LVDMYAKCGDIDNSLRWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPES 303
Query: 132 NEAMSLFSEMRDR 144
+ + + SE+ R
Sbjct: 304 KKILRMLSEITAR 316
>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 8/143 (5%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPS-TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
I L E + F L T + + S T A ++ C+ + + G +VH H+L
Sbjct: 68 IHTLSKEPIFLFKKL-TETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFGSS 126
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ +Q ++N YGKC + AR V +EMP RN L +W A+I+G A +EAM L
Sbjct: 127 LFVQTSLVNFYGKCEEIGFARKVFEEMPVRN------LVAWTAMISGHARVGAVDEAMEL 180
Query: 138 FSEMRDRELIPDGLTVRSLLCAC 160
F EM+ + PD +T+ S++ AC
Sbjct: 181 FREMQKAGIQPDAMTLVSVVSAC 203
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 11/139 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+EA+ F +Q I+P T ++S C+ +L +G +H +I D+ L
Sbjct: 175 DEAMELFREMQKAG---IQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELS 231
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+++MY KCG +E A+ V MP + D +W+++I G A A +A+ F +M
Sbjct: 232 TALVDMYAKCGCIERAKQVFVHMPVK------DTTAWSSMIMGFAYHGLAQDAIDAFQQM 285
Query: 142 RDRELIPDGLTVRSLLCAC 160
+ E+ PD +T ++L AC
Sbjct: 286 LETEVTPDHVTFLAVLSAC 304
>gi|302805077|ref|XP_002984290.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
gi|300148139|gb|EFJ14800.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
Length = 448
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 10/147 (6%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
EAL F +Q + +T+ ++ C+S +L LGR +H +++++ ++++
Sbjct: 59 KEALEIFQRMQQE-GVKTGSATFISVLEACASTSALALGRVIHQNLVANGLDRELIVATA 117
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++NMY KCG L +AR V D+M E D+ +W AI+AG A + E+ L M
Sbjct: 118 LVNMYAKCGKLVEAREVFDQM------EGMDVVAWTAIVAGSAQHGHIEESKDLMRRMEL 171
Query: 144 RELIPDGLTVRSLLCACTSPSNVLYLD 170
+ P+ +T SL+ AC+ YLD
Sbjct: 172 EGIKPNNVTFLSLVFACSHSG---YLD 195
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+ + V+ ++NMYG+C SL +AR+V + +P ++ I +WNAI+ A EA
Sbjct: 8 EAETVVGTSLVNMYGRCHSLGNARLVFERIPCKDAI------TWNAIVTAYAQDGYGKEA 61
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+ +F M+ + T S+L AC S S
Sbjct: 62 LEIFQRMQQEGVKTGSATFISVLEACASTS 91
>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
Length = 920
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 74/140 (52%), Gaps = 7/140 (5%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
LY +AL+ F + + T+ IS ++L ++ G++VH + + + +
Sbjct: 528 LYEQALMVF-MKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVA 586
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++++YGKCGS+EDA+++ EM RN + SWN II + EA+ LF +M
Sbjct: 587 NALISLYGKCGSIEDAKMIFSEMSLRNEV------SWNTIITSCSQHGRGLEALDLFDQM 640
Query: 142 RDRELIPDGLTVRSLLCACT 161
+ L P+ +T +L AC+
Sbjct: 641 KQEGLKPNDVTFIGVLAACS 660
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
+F+ I P+ TY C++ TC+ ++LG ++H + + + D+ + +++
Sbjct: 330 SFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLID 389
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY K L+ AR + + + +R+V+ SW ++IAG EA++ F EM+D +
Sbjct: 390 MYSKYRCLDKARKILEMLEKRDVV------SWTSMIAGYVQHDFCEEALATFKEMQDCGV 443
Query: 147 IPDGLTVRSLLCACTS 162
PD + + S AC
Sbjct: 444 WPDNIGLASAASACAG 459
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 72/143 (50%), Gaps = 11/143 (7%)
Query: 26 ALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
AL FD +Q + +RP T A L++ C+S+ LQ G+++H ++L + D + +
Sbjct: 229 ALQIFDEMQLSG---LRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGS 285
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+L++Y KCG +E A + + + NV+ WN ++ S+ ++ +F +M+
Sbjct: 286 LLDLYVKCGDIETAHDIFNLGDRTNVV------LWNLMLVAYGQISDLAKSFEIFGQMQA 339
Query: 144 RELIPDGLTVRSLLCACTSPSNV 166
+ P+ T +L CT +
Sbjct: 340 TGIHPNKFTYPCILRTCTCTGQI 362
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 11/124 (8%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ EAL F +Q+ + P A S C+ +++++ G ++H + S D
Sbjct: 425 HDFCEEALATFKEMQDCG---VWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAAD 481
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ + N ++N+Y +CG E+A + E+ ++ I +WN +I+G +A+ +
Sbjct: 482 ISIWNTLVNLYARCGRSEEAFSLFREIDHKDEI------TWNGLISGFGQSRLYEQALMV 535
Query: 138 FSEM 141
F +M
Sbjct: 536 FMKM 539
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA-RVVS 101
P + ++S C+ + GR +H + + + N ++ +Y GS + A RV
Sbjct: 144 PYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFC 203
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
D + D ++N +I+G A + A+ +F EM+ L PD +TV SLL AC
Sbjct: 204 DML-------FCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACA 256
Query: 162 SPSNV 166
S ++
Sbjct: 257 SVGDL 261
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
D ++ N ++++Y K G + AR V E+ R D SW A+++G A EA
Sbjct: 76 ADRLIGNLLIDLYAKNGLVWQARQVFKELSSR------DHVSWVAMLSGYAQRGLGKEAF 129
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACT 161
L+S+M +IP + S+L ACT
Sbjct: 130 RLYSQMHWTAVIPTPYVLSSVLSACT 155
>gi|347954462|gb|AEP33731.1| chlororespiratory reduction 21, partial [Crucihimalaya wallichii]
Length = 830
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 77/144 (53%), Gaps = 13/144 (9%)
Query: 26 ALVAF-DFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
AL+ F + L+N I P + + C +L+ + GR VH +++ + + V + +
Sbjct: 157 ALMGFVEMLEN----EIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGLEDCVFVAS 212
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+ +MYGKCG L+DAR V DE+P+RNV+ +WNA++ G EA+ L S+MR
Sbjct: 213 SLADMYGKCGVLDDARKVFDEIPERNVV------AWNALLVGYVQNGMNEEAIRLLSDMR 266
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
+ P +TV + L A + V
Sbjct: 267 KDGVEPSRVTVSTCLSASANMGGV 290
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
N + T + L+S + ++L+ G++V + + + D+VL + ++MY KCGS+ DA
Sbjct: 370 NLKYDCVTLSTLMSAAARTKNLKFGKEVQCYCIRHSLESDIVLASITMDMYAKCGSIVDA 429
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
+ V D ++ DL WN ++A A + EA+ LF EM+ + P+ +T
Sbjct: 430 KKVFDSTVEK------DLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNVIT 478
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 11/142 (7%)
Query: 29 AFDFLQNNTNFRIRPSTYACLI--STCSSLRSLQLGRKVHDHILSS-KSQPDVVLQNYIL 85
A FL+ + +RP+ ++ + S ++L SL GR +H +I+ + + V ++ ++
Sbjct: 530 AILFLRKMQDSGLRPNAFSITVALSASANLASLHFGRSIHGYIVRNLQHSSSVSIETSLV 589
Query: 86 NMYGKCGSLEDA-RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+MY KCG + A RV ++ +L +NA+I+ A N EA++L+ + D
Sbjct: 590 DMYAKCGDINKAERVFGSKL-------YSELPLYNAMISAYALYGNVKEAITLYRSLEDM 642
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
PD +T SLL AC ++
Sbjct: 643 GNKPDNITFTSLLSACNHVGDI 664
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLE 95
N RI P Y ++ C R L G+++H IL + + ++ ++ Y KC +LE
Sbjct: 65 NLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNGDFYAGNEYIETKLVIFYAKCDALE 124
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
A+V+ ++ RNV SW AII A+ F EM + E+ PD V +
Sbjct: 125 IAQVLFSKLRVRNVF------SWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPN 178
Query: 156 LLCACTS 162
+ AC +
Sbjct: 179 VCKACGA 185
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 10/152 (6%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
+QN NE A L + + PS T + +S +++ + G++ H + + +
Sbjct: 250 VQNGMNEE--AIRLLSDMRKDGVEPSRVTVSTCLSASANMGGVAEGKQSHAIAILNGLEL 307
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D +L +LN Y K G +E A ++ D M ++V+ +WN +I+G +A+
Sbjct: 308 DNILGTSLLNFYCKVGLIEYAEMIFDRMFDKDVV------TWNLLISGYVQQGLVEDAIY 361
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
+ MR L D +T+ +L+ A N+ +
Sbjct: 362 MCQLMRLENLKYDCVTLSTLMSAAARTKNLKF 393
Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
P+V+ N I+ + G + +A+ + +M + SP+L SW ++ G+ + EA+
Sbjct: 474 PNVITWNLIILSLLRNGEVNEAKEMFLQMQSSGI--SPNLISWTTMMNGMVQNGCSEEAI 531
Query: 136 SLFSEMRDRELIPDGLTVRSLLCA 159
+M+D L P+ ++ L A
Sbjct: 532 LFLRKMQDSGLRPNAFSITVALSA 555
>gi|302818269|ref|XP_002990808.1| hypothetical protein SELMODRAFT_132472 [Selaginella moellendorffii]
gi|300141369|gb|EFJ08081.1| hypothetical protein SELMODRAFT_132472 [Selaginella moellendorffii]
Length = 484
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 6/147 (4%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS 74
+ +Q + EAL F L+ + T+ I C+ L+ GR++H +++S
Sbjct: 219 KAYALQGEFGEALALFQRLEAEKEVKPDRVTFVVAIDCCACKPCLEEGRRIHASVVASGL 278
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
D+++ N ++NMYGKCG + AR + D+M R+V+ +W++++A AS + E
Sbjct: 279 DLDLIIGNTLVNMYGKCGQVGTARGLFDKMVVRDVV------TWSSLLATYASNGHGMEG 332
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCACT 161
+ LF M+ P+ +T +L AC+
Sbjct: 333 LELFRLMQQDYTEPNEVTFLGVLFACS 359
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 20/131 (15%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
L N+ ++ TY I C+S + L+ Q DVV+ N +L+MY KCG
Sbjct: 146 LYNDMDWTPDKITYVGAIEACASSQDLE-----------QAVQTDVVVCNTLLSMYAKCG 194
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR-DRELIPDGL 151
+ AR V + M +RNVI +WN I+ A EA++LF + ++E+ PD +
Sbjct: 195 ASAHARAVFESMSRRNVI------TWNGIMKAYALQGEFGEALALFQRLEAEKEVKPDRV 248
Query: 152 TVRSLL--CAC 160
T + CAC
Sbjct: 249 TFVVAIDCCAC 259
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 73/143 (51%), Gaps = 10/143 (6%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+EALV F + + T+ I+ C+ L + G+ +HD ++ ++ N
Sbjct: 40 DEALVFFSKMALE-GIKANAITFVVAINACAMLGDPRRGKALHDFLVPCGFFDSSLVGNS 98
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+++MYGKC L+ A+ +E+ +++V+ +WN+II+ A EA+ L+++M
Sbjct: 99 LIHMYGKCRDLDAAKSAFNELKKKDVV------TWNSIISAYAQNGRGKEALELYNDM-- 150
Query: 144 RELIPDGLTVRSLLCACTSPSNV 166
+ PD +T + AC S ++
Sbjct: 151 -DWTPDKITYVGAIEACASSQDL 172
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MYGKCGSL +A D + I P+L SW +I A + +EA+ FS+M +
Sbjct: 1 MYGKCGSLPEAW---DCFAR---IALPNLYSWTILITAYAQNGHLDEALVFFSKMALEGI 54
Query: 147 IPDGLTVRSLLCACT 161
+ +T + AC
Sbjct: 55 KANAITFVVAINACA 69
>gi|293333352|ref|NP_001168668.1| uncharacterized protein LOC100382456 [Zea mays]
gi|223950067|gb|ACN29117.1| unknown [Zea mays]
Length = 602
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 82/145 (56%), Gaps = 11/145 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+EAL FD + ++ P +T ++S ++L S + +KV +H+ + + Q D+ +
Sbjct: 337 DEALATFDAM---LCAKVEPNKATVLAVLSAGANLGSANVAQKVEEHVKAMELQSDLQVC 393
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+++MY KCGS++ AR + D +P R DLA W+A+I G A +EA+ LF+EM
Sbjct: 394 TRLIDMYCKCGSIQRARKIFDSVPNR------DLAIWSAMINGHACNGEGSEAVVLFNEM 447
Query: 142 RDRELIPDGLTVRSLLCACTSPSNV 166
+ + + PD + +L AC+ +V
Sbjct: 448 QSKGVRPDAIVFTHILTACSHSGSV 472
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQNYILNMYGKCGSL 94
R ST+ L +C++LR LGR VH S + D ++ +++MY KCG L
Sbjct: 41 AGLRGDASTFPSLAKSCAALRLPGLGRAVHALAFLSGAAVSRDAFVRTSLVDMYAKCGRL 100
Query: 95 EDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVR 154
DA + DE P S L +WN +I+ S EA+ +F+ MR E+ P G TV
Sbjct: 101 PDAHRLFDETP----CSSRTLVAWNCMISAYGRSSQVEEAVGVFNAMRRAEVRPSGSTVV 156
Query: 155 SLLCACTSPSNVLY 168
LL C + Y
Sbjct: 157 GLLSGCADSVSARY 170
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 70/138 (50%), Gaps = 12/138 (8%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCS-SLRSLQLGRKVHDHILSSKSQPDVVLQ 81
EA+ F+ ++ +RPS T L+S C+ S+ + G V+ + S D+++
Sbjct: 135 EAVGVFNAMRRA---EVRPSGSTVVGLLSGCADSVSARYPGVSVYGLTIKSGLDADLLVS 191
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N +L M + G L+ AR++ D + ++V+ +W+A+ + + E +LFS M
Sbjct: 192 NSVLTMLVRGGQLDSARLLFDRVENKSVV------TWSAMASAYLQTGDWMEVFALFSSM 245
Query: 142 RDRELIPDGLTVRSLLCA 159
R+ E D + + +L+ A
Sbjct: 246 RETEQPMDSVVLANLITA 263
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
L ++N+Y KCG+L AR V D + ++VI W +++ G +EA++ F
Sbjct: 291 LAASLVNLYSKCGNLLAAREVFDSLQWKSVI------MWTSMLNGYVECGYPDEALATFD 344
Query: 140 EMRDRELIPDGLTVRSLLCA 159
M ++ P+ TV ++L A
Sbjct: 345 AMLCAKVEPNKATVLAVLSA 364
>gi|357475405|ref|XP_003607988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509043|gb|AES90185.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 565
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 6/121 (4%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+ L C +S++ +KVHD+ L S + D + N ++ MYG C S+ DAR V D MP
Sbjct: 223 FEILFDLCGKSKSVEDAKKVHDYFLQSTFRSDFKMHNKVIEMYGNCKSMTDARRVFDHMP 282
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165
RN + SW+ +I G A+ + +E + LF +M + L T+ ++L AC S
Sbjct: 283 NRN------MDSWHMMIRGYANSTMGDEGLQLFEQMNELGLEITSETMLAVLSACGSAEA 336
Query: 166 V 166
V
Sbjct: 337 V 337
>gi|302816264|ref|XP_002989811.1| hypothetical protein SELMODRAFT_130525 [Selaginella moellendorffii]
gi|300142377|gb|EFJ09078.1| hypothetical protein SELMODRAFT_130525 [Selaginella moellendorffii]
Length = 756
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 66/116 (56%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ C+S L+ GR+VH ++S + N ++NMYGKC LE+AR V + +
Sbjct: 130 TFVTLLDCCASFADLRRGRQVHQCAVASGMDLLPTVANCVVNMYGKCDDLEEARRVFESL 189
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
++N I SW++++A A + A EAM LF M L PD +T+ S+L AC
Sbjct: 190 KRKNEI------SWSSLVAAYAQNNQATEAMKLFQHMDLEGLKPDRVTLISVLDAC 239
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 7/140 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
N+A A Q+ ++P T ++ C LR+ + ++H +L + + DVV+
Sbjct: 208 NQATEAMKLFQHMDLEGLKPDRVTLISVLDACGDLRASKQSSQIHARVLEADLERDVVVA 267
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N +++MYGK G LE A V+ + M ++ S D+ +WNA+I+ A + A +F M
Sbjct: 268 NALVSMYGKLGRLEQATVIFETMGEK----SRDVIAWNAMISAYAHTGHHTRAFGIFRIM 323
Query: 142 -RDRELIPDGLTVRSLLCAC 160
+ + P T+ ++L AC
Sbjct: 324 LLEAAVTPSAATISAILAAC 343
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 26/140 (18%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ C L +L+ G+++H H + + ++N ++NMYGKCG+LE+AR + D M N
Sbjct: 1 MLDWCVRLGALEAGKRIHRHSVECGMGKNRFVENLLINMYGKCGALEEARKILDGMEDSN 60
Query: 109 VIE-------------------------SPDLASWNAIIAGVASPSNANEAM-SLFSEMR 142
V D+ SWN++++ + + LF +M
Sbjct: 61 VFSWTIMLAAYAQNGLDSAKRVFDLSHAKRDVVSWNSMLSTCSQNEQGIQGTWELFQQMD 120
Query: 143 DRELIPDGLTVRSLLCACTS 162
PD +T +LL C S
Sbjct: 121 LEGFQPDRVTFVTLLDCCAS 140
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 19/122 (15%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A L++ C L LGR++H I +++ +++ ++ MY +CGSL DA V + M
Sbjct: 431 TFASLLAVCCDL---DLGRRLHAGIATARLASRLIVDTALVGMYSRCGSLGDAAAVFEGM 487
Query: 105 PQRNV-------------IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL 151
R+ I D SWN++I+ A +A++ + M R PD
Sbjct: 488 EDRDTCGSLGDAKLVFDRIPDKDAVSWNSMISAYAHHGRYKDAIATYRAMDCR---PDEA 544
Query: 152 TV 153
T+
Sbjct: 545 TI 546
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 49/82 (59%), Gaps = 6/82 (7%)
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+++ + +M+ KCGSL+ A + ++ ++ DL SWNA++A A + +EA++L
Sbjct: 579 VESTLASMHAKCGSLDAAMALFEKNREK------DLVSWNAMVAAYAQHGDGSEALALIH 632
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
M + P+G+T+ +L +C+
Sbjct: 633 RMELEGISPNGVTLSGVLASCS 654
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 17/120 (14%)
Query: 44 STYACLISTCSSLRSLQLGRKVH--DHILSSKSQPDVVLQNYILNMYGKCGS-LEDARVV 100
+T + +++ C L S GR++H + +S P V + +L MY +C S + AR +
Sbjct: 334 ATISAILAACLDLGS---GRRIHCLAASIGVESHPSVAIS--LLGMYSRCSSSITSARAL 388
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
M E L +WN +IA A A EA LF M ++ PDG T SLL C
Sbjct: 389 FLGM------ERKSLVAWNTMIAACAQRGLAAEAQELFKAM---DVEPDGFTFASLLAVC 439
>gi|302792192|ref|XP_002977862.1| hypothetical protein SELMODRAFT_34426 [Selaginella moellendorffii]
gi|300154565|gb|EFJ21200.1| hypothetical protein SELMODRAFT_34426 [Selaginella moellendorffii]
Length = 323
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 12/155 (7%)
Query: 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILS 71
T ++ +Q + +A F + + R + L+ C S +L+ G+ HD
Sbjct: 50 TIVSAYSLQGQHEKAYAIFKRM-DLEGVRADRVSIVTLLEACCSQGALETGKVFHDRARE 108
Query: 72 SKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNA 131
S ++++N ++NMYGKCGSL+DAR V D+M R+VI SWN II A + A
Sbjct: 109 SGLNSILMVRNAVINMYGKCGSLQDAREVFDKMDHRDVI------SWNTIIGSYAHSAFA 162
Query: 132 N-----EAMSLFSEMRDRELIPDGLTVRSLLCACT 161
EA++LF EM ++ D +T + L AC+
Sbjct: 163 QHGRSIEAVTLFREMLQEDIPVDKVTFVNALAACS 197
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+ ++++ N +LNMY KC + +A+ V DE+ E D+ SW I++ + +A
Sbjct: 11 EKEIIVANALLNMYAKCEAPAEAQKVFDEL------EKKDIVSWTTIVSAYSLQGQHEKA 64
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCACTS 162
++F M + D +++ +LL AC S
Sbjct: 65 YAIFKRMDLEGVRADRVSIVTLLEACCS 92
>gi|302805448|ref|XP_002984475.1| hypothetical protein SELMODRAFT_180944 [Selaginella moellendorffii]
gi|300147863|gb|EFJ14525.1| hypothetical protein SELMODRAFT_180944 [Selaginella moellendorffii]
Length = 592
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 85/164 (51%), Gaps = 20/164 (12%)
Query: 14 YNSQPIQNLYNEALVAFDFLQNNTN------FR--IRPST--------YACLISTCSSLR 57
++S P++N ++ A++ ++ +R +R ST ++ ++ C+ L+
Sbjct: 70 FDSMPLRNEFSWAIIISAYVGAGKEQEALCLYRALVRSSTEIQPDAFIFSSALAACARLK 129
Query: 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
L+ G ++H+ I+ + DV LQN ++ MY KCG ++ A+ V D + R+V+ + S
Sbjct: 130 CLEQGLEIHEQIVKRGIKQDVGLQNALVTMYAKCGRIDRAKQVFDRITHRDVV----VIS 185
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
WNA+IAG +A+ LF M L P +T S+L AC
Sbjct: 186 WNAMIAGFGQNGRPKQALELFRRMDLEGLQPSRMTYCSVLDACA 229
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
YA ++ C+ R L+ GR+VH I+ S D L N ++ MY CG LEDAR V D MP
Sbjct: 15 YATILRKCARSRLLEDGRRVHARIIHSGHTRDRFLGNLLVQMYRDCGRLEDARAVFDSMP 74
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM--RDRELIPDGLTVRSLLCACT 161
RN SW II+ EA+ L+ + E+ PD S L AC
Sbjct: 75 LRNEF------SWAIIISAYVGAGKEQEALCLYRALVRSSTEIQPDAFIFSSALAACA 126
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
++PS TY ++ C++L + LGR + D + + ++ D+ + N I NMYGKCG E AR
Sbjct: 214 LQPSRMTYCSVLDACANLTASSLGRIICDGMDEALAK-DISVANSICNMYGKCGLPELAR 272
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
EM R+V+ SW AIIA A ++EA+ +F M + P+G+T+ + L
Sbjct: 273 QTFLEMTYRDVV------SWTAIIAAYAQNGYSSEALDIFRIMVQAGVEPNGITLINTLS 326
Query: 159 ACT 161
AC+
Sbjct: 327 ACS 329
>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
Length = 665
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++ C L + +G+++H+ I P+++L+N +++MY CG L+DAR + D M
Sbjct: 295 TLATVLPPCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLM 354
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R+VI SW +II+ + EA+ LF +M + L PD + ++L AC+
Sbjct: 355 SARDVI------SWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACS 405
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY + +CS+ + L LG ++H + + +V + + ++MY +CG EDA V D M
Sbjct: 125 TYPLALKSCSASKDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGM 184
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD-RELIPDGLTVRSLLCA 159
P R+V+ SWNA+IAG A + A+ +F + + +PD T+ +L A
Sbjct: 185 PHRDVV------SWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPA 234
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 40/173 (23%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
L EAL F L + N +RP + +S C+ + L+LG+++H+ + + + V
Sbjct: 202 LPREALELFWRLAEDGN-AVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVR 260
Query: 80 LQNYILNMYGKCGSL-------------------------------EDARVVSDEMPQRN 108
L N +++MY KCGSL EDAR++ DEMP+R+
Sbjct: 261 LMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERD 320
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
V WNA++AG EA++LF EM+ ++ P+ +T+ +LL AC+
Sbjct: 321 VF------PWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACS 367
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 77/138 (55%), Gaps = 11/138 (7%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
EA+ F +Q + ++ P+ T L+S CS L +L++G VH +I K V L
Sbjct: 339 EAIALFHEMQKS---KVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGT 395
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG+++ A V +E+P +N + +W ++I G+A+ +A+EA+ F M
Sbjct: 396 SLVDMYAKCGNIKKAICVFNEIPVQNAL------TWTSMICGLANHGHADEAIEYFQRMI 449
Query: 143 DRELIPDGLTVRSLLCAC 160
D L PD +T +L AC
Sbjct: 450 DLGLQPDEITFIGVLSAC 467
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 10/123 (8%)
Query: 42 RPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP T+ LI C+ L+ G V H+ DV + N ++ + G + AR
Sbjct: 118 RPDHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNAAMHFWSVRGPMAFARR 177
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD--RELIPDGLTVRSLL 157
+ DE P R+V+ SWN +I G EA+ LF + + + PD +TV +
Sbjct: 178 LFDESPVRDVV------SWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAV 231
Query: 158 CAC 160
C
Sbjct: 232 SGC 234
>gi|255565773|ref|XP_002523876.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536964|gb|EEF38602.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 384
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 78/146 (53%), Gaps = 11/146 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+ +AL F +Q + ++ P T ++S C++L +L LG +H ++L + + +V +
Sbjct: 210 FEQALEWFREMQVS---KVEPDYVTIIAVLSACANLGALGLGLWIHRYVLEKEFRNNVRI 266
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MY +CG +E AR V +M +R L SWN+II G A+ A EA+ F
Sbjct: 267 GNSLIDMYSRCGCIELARQVFHKMLKRT------LVSWNSIIVGFAANGFAEEALEYFGL 320
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M+ PDG++ L AC+ V
Sbjct: 321 MQKEGFKPDGVSFTGALTACSHAGMV 346
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 28/144 (19%)
Query: 45 TYACLISTCSSL--RSLQLGRKVHDHILS-SKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
T+A LIS C+ + +G +H ++ +V++ +++MY KCG ++ AR++
Sbjct: 96 TFATLISFCADFPFQGKSIGPSIHAYVRKLGLDTCNVMVGTALVDMYAKCGKVQLARLIF 155
Query: 102 DEMPQRNVI-----------------------ESP--DLASWNAIIAGVASPSNANEAMS 136
D++ +N + E P D SW I G + +A+
Sbjct: 156 DDLKVKNSVSWNTMIDGYMRNGETGSAMELFDEMPEKDAISWTVFIDGFIKKGHFEQALE 215
Query: 137 LFSEMRDRELIPDGLTVRSLLCAC 160
F EM+ ++ PD +T+ ++L AC
Sbjct: 216 WFREMQVSKVEPDYVTIIAVLSAC 239
>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
Length = 643
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
R P T++ LI C +L SL+ G+++H +++ + +V + + +++MY KCG + A
Sbjct: 268 RPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHC 327
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ D+M SPD+ SW A+I G A A EA+ LF M P+ +T ++L A
Sbjct: 328 IFDKM------SSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTA 381
Query: 160 CT 161
C+
Sbjct: 382 CS 383
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 25/134 (18%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY-------------- 88
P++ + +C++L LG +H + S + D N +LN+Y
Sbjct: 50 PASLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVA 109
Query: 89 -----GKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
G + E R V DEM +R+V+ SWN ++ G A +EA+ +M
Sbjct: 110 IVDVPGSSTAFESVRKVFDEMIERDVV------SWNTLVLGCAEEGRHHEALGFVRKMCR 163
Query: 144 RELIPDGLTVRSLL 157
PD T+ ++L
Sbjct: 164 EGFRPDSFTLSTVL 177
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 39 FRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
FR T + ++ + ++ G +VH + DV + + +++MY C + +
Sbjct: 166 FRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSV 225
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V D +P R+ I WN+++AG A + EA+ +F M + P +T SL+
Sbjct: 226 KVFDNLPVRDHI------LWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIP 279
Query: 159 AC 160
C
Sbjct: 280 VC 281
>gi|388508872|gb|AFK42502.1| unknown [Medicago truncatula]
Length = 565
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 6/121 (4%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+ L C +S++ +KVHD+ L S + D + N ++ MYG C S+ DAR V D MP
Sbjct: 223 FEILFDLCGKSKSVEDAKKVHDYFLQSTFRSDFKMHNKVIEMYGNCKSMTDARRVFDHMP 282
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165
RN + SW+ +I G A+ + +E + LF +M + L T+ ++L AC S
Sbjct: 283 NRN------MDSWHMMIRGYANSTMGDEGLQLFEQMNELGLEITSETMLAVLSACGSAEA 336
Query: 166 V 166
V
Sbjct: 337 V 337
>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
Length = 736
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ + C+ + + GR++ ++S D ++QN ++NMY KCGSLE AR V D +
Sbjct: 165 TFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRL 224
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R+VI +WN +I+G A A +A+ LF M + P+ +T LL ACT
Sbjct: 225 KNRDVI------AWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACT 275
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC-GSLEDARVVSDE 103
T+ L++ C++L L+ GR +H + + D+V+ N +LNMY KC SLE+AR V +
Sbjct: 266 TFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFER 325
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
M R+VI +WN +I A +A+ +F +M+ + P+ +T+ ++L AC
Sbjct: 326 MRTRDVI------TWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACA 377
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y +A A D + + P+ T + ++S C+ L + + G+ VH I S + + DVVL
Sbjct: 344 YGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVL 403
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+N ++NMY +CGSL+D V I L SW+ +IA A ++ + F E
Sbjct: 404 ENSLMNMYNRCGSLDDTVGVF------AAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWE 457
Query: 141 MRDRELIPDGLTVRSLLCACT 161
+ L D +T+ S L AC+
Sbjct: 458 LLQEGLAADDVTMVSTLSACS 478
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 71/132 (53%), Gaps = 12/132 (9%)
Query: 41 IRP--STYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKCGSLEDA 97
+RP + + I CSS + L+ G+ +H IL ++ + D++L ++ MY +C LE A
Sbjct: 54 LRPDGAMFVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELA 113
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE---LIPDGLTVR 154
R DEM ++ ++ +WNA+IAG + + A+ ++ +M + + PD +T
Sbjct: 114 RKTFDEMGKKTLV------TWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFS 167
Query: 155 SLLCACTSPSNV 166
S L ACT ++
Sbjct: 168 SALYACTVVGDI 179
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MYGKCGS+ DA V + IE P+ SW I+A A + EA+ + M L
Sbjct: 1 MYGKCGSVADALAVF------HAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGL 54
Query: 147 IPDGLTVRSLLCACTSPSNV 166
PDG + C+S ++
Sbjct: 55 RPDGAMFVVAIGVCSSSKDL 74
>gi|255545044|ref|XP_002513583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547491|gb|EEF48986.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 567
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 78/145 (53%), Gaps = 6/145 (4%)
Query: 16 SQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQ 75
S +QN +E + ++ ST++ L CS + SLQ G+ +H +++ +
Sbjct: 403 SGYVQNEQHEEALKLYVTMKRSSVDCTRSTFSVLFRACSYIGSLQQGKMLHANLIKTPFA 462
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
+V + +++MY KCGS+ DA+ + I +P++A+W A+I G A +EA+
Sbjct: 463 SNVYVGTSLVDMYSKCGSIFDAK------KSFSSISAPNVAAWTALINGYAHHGFGSEAI 516
Query: 136 SLFSEMRDRELIPDGLTVRSLLCAC 160
LF M +++++P+G T +L AC
Sbjct: 517 LLFQHMLEQKVVPNGATFVGILTAC 541
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 78/155 (50%), Gaps = 27/155 (17%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
L + +N ++ +T++ ++S C+ +S G+++H +L S ++ + +L YG C
Sbjct: 91 LMHRSNTQLDETTFSTILSVCTRTQSFCDGKQIHCLVLKSGCGSFELVGSVLLYFYGNCS 150
Query: 93 SLEDARVVSDEMPQRN-----------------------VIESP--DLASWNAIIAGVA- 126
++DA+ V DE+ +N ++ P ++ SW+ +I+G A
Sbjct: 151 QIDDAKRVFDELHDKNEVVWSSMVVCYVQRGLLTDAYDLFVKMPKKEVVSWSKLISGYAK 210
Query: 127 SPSNANEAMSLFSEMRDR-ELIPDGLTVRSLLCAC 160
S + +A+ LF MR+ E++P+ T+ S++ C
Sbjct: 211 SEVRSEKALELFQLMRESGEVLPNEFTLDSVIRVC 245
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 66 HDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGV 125
H H+ S P V N + Y G L+ AR + D+MPQR + SWN +I+
Sbjct: 24 HVHV-SRSDDPCTVSTNIAITRYAIKGQLDFARCLFDKMPQRTSV------SWNTMISSY 76
Query: 126 ASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
E+ SL S M D T ++L CT
Sbjct: 77 LKWGKFKESFSLLSLMHRSNTQLDETTFSTILSVCT 112
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 61 LGR-KVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
LGR K D I + ++ + L N ++ Y G +ED++ + ++MPQ+ +I S N
Sbjct: 314 LGRIKDADLIFNRATEKNSALCNLMVKAYSMSGRVEDSKTLFEKMPQKTIISS------N 367
Query: 120 AIIAGVASPSNANEAMSLFSEMRDR 144
+I+ + ++A+ LF + +D+
Sbjct: 368 TMISVYSRNGELDKALMLFEQTKDQ 392
>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
Length = 989
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +S +++ +++ G+++H I+ D+ + N ++ Y KCGS+EDAR EM
Sbjct: 619 TFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEM 678
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P++N + SWNA+I G + NEA++LF +M+ +P+ +T +L AC+
Sbjct: 679 PEKNDV------SWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACS 729
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 79/153 (51%), Gaps = 18/153 (11%)
Query: 22 LYNEALVAFDFLQN-NTNFRI-----------RPSTYACLISTCSSLRSLQLGRKVHDHI 69
L+N LVAF L N + +FRI TY ++ TC+S+ +L LG ++H +
Sbjct: 382 LWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQV 441
Query: 70 LSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPS 129
+ + Q +V + + +++MY K G L+ A V+ + + +V+ SW A+I+G A +
Sbjct: 442 IKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVV------SWTALISGYAQHN 495
Query: 130 NANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
EA+ F EM +R + D + S + AC
Sbjct: 496 LFAEALKHFKEMLNRGIQSDNIGFSSAISACAG 528
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 75/147 (51%), Gaps = 7/147 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
NL+ EAL F + N + ++ IS C+ +++L GR++H S D+
Sbjct: 494 HNLFAEALKHFKEMLNR-GIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLS 552
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ N ++++Y +CG +++A + ++ I++ D SWN +I+G A +A+ +F+
Sbjct: 553 IGNALVSLYARCGRIKEAYLEFEK------IDAKDSISWNGLISGFAQSGYCEDALKVFA 606
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNV 166
+M +L T S + A + +N+
Sbjct: 607 QMNRAKLEASFFTFGSAVSAAANIANI 633
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
QN Y E + + P ++ ++S C+ ++ +G ++H + S +
Sbjct: 190 QNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETY 249
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ N ++ +Y + + A V +M +S D S+N++I+G+A ++ A+ LF+
Sbjct: 250 VCNALVTLYSRMPNFVSAEKVFSKM------QSKDEVSFNSLISGLAQQGFSDGALELFT 303
Query: 140 EMRDRELIPDGLTVRSLLCACTS 162
+M+ L PD +TV SLL AC S
Sbjct: 304 KMKRDYLKPDCVTVASLLSACAS 326
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A L+S C+S +L G ++H +++ + D++++ +L++Y C ++ A +
Sbjct: 316 TVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTA 375
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
NV+ WN ++ N +E+ +F +M+ + LIP+ T S+L CTS
Sbjct: 376 QTENVV------LWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTS 427
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY L+ C + SL +K+H IL + VL N ++++Y G L+ V ++M
Sbjct: 12 TYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDM 71
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P R+V SW+ II+G +N + LFS M + + P ++ S+L AC+
Sbjct: 72 PNRSV------RSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSG 123
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Query: 45 TYACLISTCSSLR-SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
++A ++ CS R ++ ++H I+ ++ N ++ +Y K G + AR V D
Sbjct: 113 SFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDN 172
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ + D SW A+I+G + EA+ LF EM + P S+L CT
Sbjct: 173 LCTK------DSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCT 224
>gi|297843840|ref|XP_002889801.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335643|gb|EFH66060.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 467
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 82/154 (53%), Gaps = 10/154 (6%)
Query: 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRP--STYACLISTCSSL--RSLQLGRKVHD 67
T N L+ +AL+ F + N I P +T+ C++S+C++ ++LG+++H
Sbjct: 188 TVINGFSKNGLHAKALMVFGEMIQNQRAVITPNEATFVCVLSSCANFDQGGIRLGKQIHG 247
Query: 68 HILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127
+IL+ + +L +L+MYGK G LE A + ++ + V +WNAII +AS
Sbjct: 248 YILTKEIILTPILGTALLDMYGKAGDLEMALTIFHQIRDKKV------CAWNAIIPALAS 301
Query: 128 PSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ + +F M+ + P+G+T+ ++L AC
Sbjct: 302 NGRPKQTLEMFEMMKSSNVHPNGITLLAILTACA 335
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118
L+ RK+ D IL P VV N +L+ G+ G + A + +MP +V+ SW
Sbjct: 137 LKSSRKMFDDIL----DPCVVACNSLLDACGRNGEMNSAFELFQKMPVTDVV------SW 186
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRE---LIPDGLTVRSLLCACT 161
+I G + +A+ +F EM + + P+ T +L +C
Sbjct: 187 TTVINGFSKNGLHAKALMVFGEMIQNQRAVITPNEATFVCVLSSCA 232
>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 819
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 89/163 (54%), Gaps = 15/163 (9%)
Query: 3 RNLKTQLRFTFYNSQPIQNLYN-EALVAFDFLQNNTNFRIRPSTYAC--LISTCSSLRSL 59
RNL + +T S +QN +N EA+ F N T +P +AC ++++C SL ++
Sbjct: 285 RNL---VSWTTMISGYMQNSFNAEAITMF---WNMTQAGWQPDGFACTSILNSCGSLAAI 338
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
GR++H H++ + + D ++N +++MY KC L +AR V D + + + I S+N
Sbjct: 339 WQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAI------SYN 392
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
A+I G + + EA+++F MR L P LT SLL +S
Sbjct: 393 AMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSS 435
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 8/128 (6%)
Query: 41 IRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP + A +S CS+L L+ GR++H + S ++ D + N ++++Y KC L AR
Sbjct: 217 VRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAAR 276
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+ D M RN++ SW +I+G S EA+++F M PDG S+L
Sbjct: 277 KLFDCMEYRNLV------SWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILN 330
Query: 159 ACTSPSNV 166
+C S + +
Sbjct: 331 SCGSLAAI 338
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L++ S+L S+ G++ H I+ + D + N +++MY KCG +++ R++ +
Sbjct: 526 TFVALVTVASTLASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLFEST 585
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+VI WN++I A +A EA+ +F M + E+ P+ +T +L AC
Sbjct: 586 CGEDVI------CWNSMITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACAHAG 639
Query: 165 NV 166
V
Sbjct: 640 FV 641
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 74/142 (52%), Gaps = 8/142 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A + Q F +RPS T+ L+ SS +++L +++H I+ S + D+ + +++
Sbjct: 407 AVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALID 466
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
+Y KC + DA+ V N++ D+ WN++I G A EA+ LF+++ +
Sbjct: 467 VYSKCSLVNDAKTVF------NMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGM 520
Query: 147 IPDGLTVRSLLCACTSPSNVLY 168
P+ T +L+ ++ +++ +
Sbjct: 521 APNEFTFVALVTVASTLASMFH 542
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
A ++ C+ +++ LG +VH + +V + ++N+Y K G +++A +V +P
Sbjct: 124 ASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALPV 183
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
R + +WN +I G A A+ LF M + PD + S + AC++
Sbjct: 184 RTPV------TWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSA 233
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
+CL + LR +L +H + D+ L N +L Y G L DAR + D MP
Sbjct: 24 SCLPTGGDRLR--RLNPAIHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPH 81
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL-IPDGLTVRSLLCACTSPSN 165
RN++ SW ++I+ + A+SLF + +P+ + S+L ACT
Sbjct: 82 RNLV------SWGSVISMYTQHGRDDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKA 135
Query: 166 V 166
V
Sbjct: 136 V 136
>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Brachypodium distachyon]
Length = 614
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 7/122 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+++ S L SL G++VH IL + +VLQN +++MY KCG L +R V D M
Sbjct: 245 TFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNM 304
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
PQR+ I SWNA++ G E + LF M + E+ PD +T+ ++L C+
Sbjct: 305 PQRSAI------SWNAMLMGYGRHGIGQEVVQLFRTMTE-EVKPDSVTLLAVLSGCSHGG 357
Query: 165 NV 166
V
Sbjct: 358 LV 359
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Query: 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
R Y I+ C ++L GR+VH H++ ++ +P V L ++ +Y +CG+L+DAR V
Sbjct: 40 RFHDYDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVL 99
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
D MP+RNV+ SW A+I+G + EA+ LF M + T+ ++L +C
Sbjct: 100 DGMPERNVV------SWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSC 152
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 70/124 (56%), Gaps = 6/124 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++++C +S+Q +VH ++ + + + + + +L+MYGK G++++AR V D +
Sbjct: 144 TLATVLTSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDML 203
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P+R D S AII+G A +EA+ LF ++ + + +T +LL + + +
Sbjct: 204 PER------DTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLA 257
Query: 165 NVLY 168
++ Y
Sbjct: 258 SLNY 261
>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 748
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 20 QNLYNE-ALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
QN Y+E A+ F +Q + I P T +IS+C++L SL+ G + H L+S
Sbjct: 353 QNGYSEEAVKTFSDMQK---YGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLIS 409
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+ + N ++ +YGKCGS+ED+ + +E I D +W A+++G A ANE +
Sbjct: 410 FITVSNALVTLYGKCGSIEDSHRLFNE------ISFKDEVTWTALVSGYAQFGKANETIG 463
Query: 137 LFSEMRDRELIPDGLTVRSLLCACT 161
LF M L PD +T +L AC+
Sbjct: 464 LFESMLAHGLKPDKVTFIGVLSACS 488
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 70/124 (56%), Gaps = 6/124 (4%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
N ++ T+ +++ C + +LQ G++VH +I+ + + ++ + + +++MY KC +++ A
Sbjct: 270 NLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSA 329
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
V +M +NV+ SW A++ G + EA+ FS+M+ + PD T+ S++
Sbjct: 330 EAVFKKMTCKNVV------SWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVI 383
Query: 158 CACT 161
+C
Sbjct: 384 SSCA 387
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 6/115 (5%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
L+N+ +F + T++ L+ S ++LGR++H H++ V + + +++MY K G
Sbjct: 133 LKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMG 192
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
+ AR V DE+P++NV+ +N +I G+ ++ LF EMR+R+ I
Sbjct: 193 MISCARKVFDELPEKNVV------MYNTLIMGLMRCGRVEDSKRLFFEMRERDSI 241
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y L+ C + + +H HI+ + P+ L N +++ Y K GS+ A V D+MP
Sbjct: 12 YCALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMP 71
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
P+L SWN I++ + +E LF M R DG++ SL+
Sbjct: 72 H------PNLYSWNTILSAYSKLGRVSEMEYLFDAMPRR----DGVSWNSLI 113
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
LIS+ + L S+ KV D + P++ N IL+ Y K G + + + D MP+R
Sbjct: 50 LISSYAKLGSIPYACKVFDQM----PHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRR- 104
Query: 109 VIESPDLASWNAIIAGVAS 127
D SWN++I+G A
Sbjct: 105 -----DGVSWNSLISGYAG 118
>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Glycine max]
Length = 686
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 9/150 (6%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+QN + E FLQ + ++S C+ L L+LGR VH L + + ++
Sbjct: 289 VQN-HEEERACMVFLQARKEVEPTDFMISSVLSACAELGGLELGRSVHALALKACVEENI 347
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ + ++++YGKCGS+E A V EMP+RN L +WNA+I G A + + A+SLF
Sbjct: 348 FVGSALVDLYGKCGSIEYAEQVFREMPERN------LVTWNAMIGGYAHLGDVDMALSLF 401
Query: 139 SEMRDRE--LIPDGLTVRSLLCACTSPSNV 166
EM + +T+ S+L AC+ V
Sbjct: 402 QEMTSGSCGIALSYVTLVSVLSACSRAGAV 431
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 9/119 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C+ + SL+LGR++H I+ S+ + DV + N +++ YGKCG + + +V +
Sbjct: 212 TFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCGDIVSSELVFSRI 271
Query: 105 --PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+RNV+ SW +++A + A +F + R +E+ P + S+L AC
Sbjct: 272 GSGRRNVV------SWCSLLAALVQNHEEERACMVFLQAR-KEVEPTDFMISSVLSACA 323
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ C+ +SL G+++H L + DV + +MY K G +AR + DEM
Sbjct: 111 TFPCVFKASASLHMPVTGKQLHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEM 170
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P RN LA+WNA ++ +A++ F + + P+ +T + L AC
Sbjct: 171 PHRN------LATWNAYMSNAVQDGRCLDAIAAFKKFLCVDGEPNAITFCAFLNACA 221
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 57 RSLQLGRKVHDHILSSKSQP-DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDL 115
RS LGR VH HIL + P L N+++NMY K A++V R V+
Sbjct: 21 RSSLLGRAVHAHILRTHDTPLPSFLCNHLVNMYSKLDLPNSAQLVLSLTNPRTVV----- 75
Query: 116 ASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
+W ++I+G A+ FS MR ++P+ T
Sbjct: 76 -TWTSLISGCVHNRRFTSALLHFSNMRRECVLPNDFT 111
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 79.3 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 76/140 (54%), Gaps = 6/140 (4%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
L++E L +F + + T ++S CS L +L +G+ VH + S + ++ +
Sbjct: 284 LFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVG 343
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N +++MY KCG +E+A VV N ++ D+ SWN II G+A +A +A+ +F M
Sbjct: 344 NVLIDMYAKCGVIENAVVVF------NCLDRKDIISWNTIINGLAIHGHAPDALGMFDRM 397
Query: 142 RDRELIPDGLTVRSLLCACT 161
+ PDG+T +L ACT
Sbjct: 398 KSEGEEPDGVTFVGILSACT 417
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 11/117 (9%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
++ LIS +++ R++ D + D + N +LN Y G +E V DEMP
Sbjct: 210 WSVLISGYIESKNMAAARELFDKM----PNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMP 265
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR-DRELIPDGLTVRSLLCACT 161
+RNV SWN +I G +E + F M + +IP+ T+ ++L AC+
Sbjct: 266 ERNVF------SWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACS 316
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 25/126 (19%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +I +C L ++ G +VH + + + +++MY K G +EDA V EM
Sbjct: 112 TFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEM 171
Query: 105 PQRNVI-------------------------ESPDLASWNAIIAGVASPSNANEAMSLFS 139
+RNV+ D+ W+ +I+G N A LF
Sbjct: 172 HERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVVMWSVLISGYIESKNMAAARELFD 231
Query: 140 EMRDRE 145
+M +R+
Sbjct: 232 KMPNRD 237
Score = 37.4 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 40 RIRPSTYACLISTCSSLRSL-QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
RI + L+ +C + L Q+ ++ H L D V N+I + + AR
Sbjct: 9 RIVEEKFITLLRSCKNYERLHQIQAQIVTHGLEHN---DFVAPNFITTC-SRFKRIHHAR 64
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+ D++PQ P+ A+WNA+ G + + + LF E+ +P+ T ++
Sbjct: 65 KLFDKIPQ------PNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIK 118
Query: 159 AC 160
+C
Sbjct: 119 SC 120
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 8/147 (5%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
L+ +A+ F L + T + T C+I C+ L L LG+ +H DV +
Sbjct: 80 LFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVG 139
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++ MYGKCG +E+A V + MP+RN L SWN+II G + E+ + F EM
Sbjct: 140 NALIAMYGKCGLVEEAVKVFEHMPERN------LVSWNSIICGFSENGFLQESFNAFREM 193
Query: 142 --RDRELIPDGLTVRSLLCACTSPSNV 166
+ +PD T+ ++L C ++
Sbjct: 194 LVGEESFVPDVATLVTVLPVCAGEEDI 220
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Query: 41 IRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I+P A C+ CS L +L+LG+++H L + D+ + + I++MY K G + ++
Sbjct: 505 IQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQ 564
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+ D + ++ D+ASWN IIAG EA+ LF +M L PD T +L
Sbjct: 565 RIFDRLREK------DVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILM 618
Query: 159 ACTSPSNV 166
AC+ V
Sbjct: 619 ACSHAGLV 626
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 8/116 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHI-LSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQR 107
L+ C + +++GR++H+ + S++ D VL I+ MY CGS D+R+V D++ ++
Sbjct: 4 LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63
Query: 108 NVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD-RELIPDGLTVRSLLCACTS 162
N+ + WNAI++ +AMS+FSE+ E PD T+ ++ AC
Sbjct: 64 NLFQ------WNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAG 113
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ C LQ +++H + Q + ++ N + Y +CG+L + V D M +
Sbjct: 313 VLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKT 372
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
V +SWNA++ G A S+ +A+ L+ +M D L PD T+ SLL AC+ ++ Y
Sbjct: 373 V------SSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHY 426
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 15/142 (10%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A D T+ + P T L+ CS ++SL G ++H L + D + +L+
Sbjct: 392 ALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLS 451
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
+Y CG A+V+ D M R+ L SWN +IAG + +EA++LF R++
Sbjct: 452 LYICCGKPFAAQVLFDGMEHRS------LVSWNVMIAGYSQNGLPDEAINLF-----RQM 500
Query: 147 IPDGLTVR--SLLCACTSPSNV 166
+ DG+ +++C C + S +
Sbjct: 501 LSDGIQPYEIAIMCVCGACSQL 522
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 70/145 (48%), Gaps = 9/145 (6%)
Query: 25 EALVAF-DFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
E+ AF + L +F +T ++ C+ ++ G VH + ++++ N
Sbjct: 185 ESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNS 244
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR- 142
+++MY KC L +A+++ D+ ++N++ SWN++I G A + L +M+
Sbjct: 245 LIDMYSKCRFLSEAQLLFDKNDKKNIV------SWNSMIGGYAREEDVCRTFYLLQKMQT 298
Query: 143 -DRELIPDGLTVRSLLCACTSPSNV 166
D ++ D T+ ++L C S +
Sbjct: 299 EDAKMKADEFTILNVLPVCLERSEL 323
>gi|15233482|ref|NP_192346.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75214457|sp|Q9XE98.1|PP303_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g04370
gi|4982476|gb|AAD36944.1|AF069441_4 hypothetical protein [Arabidopsis thaliana]
gi|7267194|emb|CAB77905.1| hypothetical protein [Arabidopsis thaliana]
gi|332656985|gb|AEE82385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 729
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 78/142 (54%), Gaps = 10/142 (7%)
Query: 25 EALVAF-DFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+AL+ F + LQ+ ++ + A ++++C+ L S LG VH ++L D N
Sbjct: 329 KALIVFSEMLQSGSD--LSSEAIASVVASCAQLGSFDLGASVHGYVLRHGYTLDTPALNS 386
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++ MY KCG L+ + V+ + M +R DL SWNAII+G A + +A+ LF EM+
Sbjct: 387 LITMYAKCGHLDKSLVIFERMNER------DLVSWNAIISGYAQNVDLCKALLLFEEMKF 440
Query: 144 RELIP-DGLTVRSLLCACTSPS 164
+ + D TV SLL AC+S
Sbjct: 441 KTVQQVDSFTVVSLLQACSSAG 462
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ C+SL+ L G +H +L + D + + ++N+Y K G L AR V +EM
Sbjct: 48 TFPSLLKACASLQRLSFGLSIHQQVLVNGFSSDFYISSSLVNLYAKFGLLAHARKVFEEM 107
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+R+V+ W A+I + EA SL +EMR + + P +T+ +L
Sbjct: 108 RERDVVH------WTAMIGCYSRAGIVGEACSLVNEMRFQGIKPGPVTLLEML 154
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 72/137 (52%), Gaps = 6/137 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
+AL+ F+ ++ T ++ T L+ CSS +L +G+ +H ++ S +P ++ +
Sbjct: 430 KALLLFEEMKFKTVQQVDSFTVVSLLQACSSAGALPVGKLIHCIVIRSFIRPCSLVDTAL 489
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MY KCG LE A+ D + ++V+ SW +IAG + A+ ++SE
Sbjct: 490 VDMYSKCGYLEAAQRCFDSISWKDVV------SWGILIAGYGFHGKGDIALEIYSEFLHS 543
Query: 145 ELIPDGLTVRSLLCACT 161
+ P+ + ++L +C+
Sbjct: 544 GMEPNHVIFLAVLSSCS 560
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 33 LQNNTNFR-IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91
L N F+ I+P L L QL + +HD + D+ + N +LN+Y KC
Sbjct: 134 LVNEMRFQGIKPGPVTLLEMLSGVLEITQL-QCLHDFAVIYGFDCDIAVMNSMLNLYCKC 192
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD 149
+ DA+ + D+M QR D+ SWN +I+G AS N +E + L MR L PD
Sbjct: 193 DHVGDAKDLFDQMEQR------DMVSWNTMISGYASVGNMSEILKLLYRMRGDGLRPD 244
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 41 IRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP T+ +S ++ L++GR +H I+ + D+ L+ ++ MY KCG E +
Sbjct: 241 LRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKCGKEEASY 300
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
V + +P ++V+ W +I+G+ A +A+ +FSEM
Sbjct: 301 RVLETIPNKDVV------CWTVMISGLMRLGRAEKALIVFSEM 337
>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 840
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +++ C+S+ + GR+VH I+ S P+V +Q+ +++MY KCG L AR++ D M
Sbjct: 238 TFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTM 297
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
E D+ WN++I G + EA+ LF +M +R++ D T S+L + S
Sbjct: 298 ------EIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCK 351
Query: 165 NV 166
N+
Sbjct: 352 NL 353
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
AC+ S C+ L ++ GR+VH + + S + + +N ++ MY KCG LEDA V D M
Sbjct: 442 ACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVFDSMET 501
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
RNVI SW AII G A S F M
Sbjct: 502 RNVI------SWTAIIVGYAQNGLVETGQSYFESM 530
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 42 RPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
+PS Y ++ CS+L L G+ +H + + + + ++ + +++MY KC L +A
Sbjct: 131 KPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEY 190
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ +P R + W A++ G A + +A+ F EMR++ + + T S+L A
Sbjct: 191 LFFSLPDR-----KNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTA 245
Query: 160 CTSPS 164
CTS S
Sbjct: 246 CTSIS 250
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EALV F + N + RI TY ++ + +S ++L++G VH + + + N +
Sbjct: 320 EALVLFHKMHNR-DIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNAL 378
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MY K G+L A V +++ ++VI SW +++ G +A+ LF +MR
Sbjct: 379 VDMYAKQGNLSCALDVFNKILDKDVI------SWTSLVTGYVHNGFHEKALQLFCDMRTA 432
Query: 145 ELIPDGLTVRSLLCACT 161
+ D V + AC
Sbjct: 433 RVDLDQFVVACVFSACA 449
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D N +++ Y G+L +AR + +E P +N I +W+++++G E +
Sbjct: 67 DKYTWNIMISAYANLGNLVEARKLFNETPIKNSI------TWSSLVSGYCKNGCEVEGLR 120
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPS 164
FS+M P T+ S+L AC++ S
Sbjct: 121 QFSQMWSDGQKPSQYTLGSVLRACSTLS 148
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +L+ K G +++AR + D+MP R D +WN +I+ A+ N EA LF+E
Sbjct: 41 NQLLSELSKNGRVDEARKLFDQMPYR------DKYTWNIMISAYANLGNLVEARKLFNE 93
>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Glycine max]
Length = 820
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 75/133 (56%), Gaps = 6/133 (4%)
Query: 29 AFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY 88
+F+ +T P TYACL+S + + ++ G ++H I+ S ++ + N +++MY
Sbjct: 434 SFNHEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMY 493
Query: 89 GKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP 148
KCG+ E A V ++M RNVI +W +II+G A A +A+ LF EM + + P
Sbjct: 494 SKCGNKEAALQVFNDMGYRNVI------TWTSIISGFAKHGFATKALELFYEMLEIGVKP 547
Query: 149 DGLTVRSLLCACT 161
+ +T ++L AC+
Sbjct: 548 NEVTYIAVLSACS 560
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T L+S C L LG+++H ++ S DV + +++MY K ++E++R + + M
Sbjct: 250 TLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTM 309
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
NV+ SW A+I+G EA+ LF M + P+ T S+L AC S
Sbjct: 310 LHHNVM------SWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACAS 361
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+ C +L+LG+ +H ++ S D VL N ++ +Y KCG E+A + M
Sbjct: 45 LLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHK 104
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD--RELI-PDGLTVRSLLCACTSP 163
DL SW+AII+ A+ S + A+ F M R +I P+ +LL +C++P
Sbjct: 105 ----RDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNP 158
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 12/143 (8%)
Query: 24 NEALVAF-DFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVV 79
+ AL+ F LQ + N I P+ Y L+ +CS+ G + +L + V
Sbjct: 124 SRALLTFLHMLQCSRNI-IYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVC 182
Query: 80 LQNYILNMYGKCG-SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ +++M+ K G ++ AR+V D+M +N L +W +I + ++A+ LF
Sbjct: 183 VGCALIDMFTKGGLDIQSARMVFDKMQHKN------LVTWTLMITRYSQLGLLDDAVDLF 236
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
+ E PD T+ SLL AC
Sbjct: 237 CRLLVSEYTPDKFTLTSLLSACV 259
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 40/76 (52%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ ++ C+SL +G+++H + + N ++NMY + G++E AR + +
Sbjct: 351 TFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNIL 410
Query: 105 PQRNVIESPDLASWNA 120
++N+I A NA
Sbjct: 411 FEKNLISYNTAADANA 426
>gi|224145077|ref|XP_002325518.1| predicted protein [Populus trichocarpa]
gi|222862393|gb|EEE99899.1| predicted protein [Populus trichocarpa]
Length = 678
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 11/139 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
NEA F F+Q + + RP T A ++S CS +++L+ G+++H HIL + +
Sbjct: 493 NEAFNVFRFMQWSKH---RPDSVTMARMLSICSKIKTLKFGKEIHGHILKKDFESIPFVS 549
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+ ++ MYG CG + A V + +P + + +W AII S +A+ LF EM
Sbjct: 550 SELVKMYGSCGLVHSAESVFNAVPVKGSM------TWTAIIEAYGYNSLWQDAIKLFDEM 603
Query: 142 RDRELIPDGLTVRSLLCAC 160
R R+ P+ T + +L C
Sbjct: 604 RSRKFTPNDFTFKVVLSIC 622
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 67/125 (53%), Gaps = 8/125 (6%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
+N +AL+ D++ + + P+T++ LI+ C +SL +++H H+ + Q +
Sbjct: 81 KNQLKDALIIMDYM-DQQGIPVNPTTFSALIAACIRSKSLTKAKEIHTHLRINGLQNNEF 139
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG--VASPSNANEAMSL 137
L+ +++MY CGS+EDA+ V DE + + WNA+I G ++ + +S
Sbjct: 140 LRTKLVHMYTSCGSIEDAKSVFDE-----CTSTATVYPWNALIRGTVISGKKRYGDVLSA 194
Query: 138 FSEMR 142
+ EMR
Sbjct: 195 YQEMR 199
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 42 RPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP T A +I C+ L++L+ G+++H + P+V L ++ MY KCG L+ +
Sbjct: 407 RPDVVTVATVIPVCAKLKTLKHGKEIHAFSVKKLFLPNVSLTTSLIKMYSKCGVLDYSVK 466
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ D M RNVI +W A+I NEA ++F M+ + PD +T+ +L
Sbjct: 467 LFDGMEARNVI------AWTAMIDSYVENGCINEAFNVFRFMQWSKHRPDSVTMARMLSI 520
Query: 160 CT 161
C+
Sbjct: 521 CS 522
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 7/135 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y + L A+ ++ N + T++ +I + + +L+ G K H ++ + VL+
Sbjct: 188 YGDVLSAYQEMRVN-GVELNEYTFSNVIKSFAGASALKQGFKTHAIMIKNGMISSAVLRT 246
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG A V +E+ +R D+ +W A+IAG A EA+ M
Sbjct: 247 CLIDMYFKCGKTRLAHNVFEELLER------DIVAWGAMIAGFAHNRRQWEALDYVRWMV 300
Query: 143 DRELIPDGLTVRSLL 157
+ P+ + + S+L
Sbjct: 301 SEGMYPNSVIITSIL 315
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 7/102 (6%)
Query: 60 QLGRKVHDHILSSKSQP-DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118
+LG++VH ++L K ++ +Q+ +++MY KCG + R V +RNV+ SW
Sbjct: 325 RLGQEVHCYVLKMKGYSRELSIQSGLIDMYCKCGDMGSGRRVFYGSRERNVV------SW 378
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
A+++G S +A+ M+ PD +TV +++ C
Sbjct: 379 TALMSGYVSNGRLEQALRSVVWMQQEGCRPDVVTVATVIPVC 420
>gi|255549315|ref|XP_002515711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545148|gb|EEF46658.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 462
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY +I C LR ++ G +VH ++ + D+ + N +L MY K G+++ AR+V D M
Sbjct: 145 TYPFVIKACGDLRDVEFGWRVHCEVVITGFNLDIYVGNSLLAMYSKFGNMKMARMVFDRM 204
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P R DL SWN +I+G E +++F+ M+ L D +T+ LLC C
Sbjct: 205 PVR------DLTSWNTMISGYLKNGKPREVLAIFNLMKQIGLSVDDMTLIGLLCTC 254
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 6/105 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C + +++ GR VH ++ + + +++MY KCG+L A +V +EM
Sbjct: 348 TFITVLGACEQITAMEFGRSVHSYLSKKGFSATIFVATALIDMYAKCGNLACAHLVFEEM 407
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD 149
P++N L W+A+I+G EA+SLF EM +IPD
Sbjct: 408 PEKN------LFCWSAMISGYGIHGMGREAISLFHEMIKNHIIPD 446
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK-SQPDVVLQNY 83
E L F+ L + T L+ TC+ L + + G+++H +++ ++ S + L N
Sbjct: 227 EVLAIFN-LMKQIGLSVDDMTLIGLLCTCAELFAEKQGKEIHGYVVRNRHSVFNHFLINS 285
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++ MY KC S+ DAR + + M + D SWN++I+G A +A E++ +F M
Sbjct: 286 LIEMYCKCNSMVDARKLFEHMAWK------DTVSWNSMISGYARNRDAFESLRVFCRMVL 339
Query: 144 RELIPDGLTVRSLLCAC 160
PD +T ++L AC
Sbjct: 340 EGTKPDKITFITVLGAC 356
>gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
Length = 768
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 10/120 (8%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV--VS 101
ST++ L CS L SLQ G+ +H H++ + + +V + +++MY KCGS+ +A+ VS
Sbjct: 468 STFSALFHACSCLGSLQQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVS 527
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I SP++A+W A+I G A +EA+SLF M ++ L P+G T +L AC+
Sbjct: 528 --------IFSPNVAAWTALINGHAYHGLGSEAISLFDXMIEQGLAPNGATFVGVLSACS 579
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 74/136 (54%), Gaps = 7/136 (5%)
Query: 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILS 71
T +S ++EAL + + ++ ++ ST++ ++S C+ LR L+ G+ +H +L
Sbjct: 108 TMISSYSKHGRFSEALF-LVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLK 166
Query: 72 SKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNA 131
S S+ ++ + +L Y C + +AR V D + +RN + W+ ++ G + +
Sbjct: 167 SGSESFELVGSALLYFYASCFEIGEARRVFDVLVRRNEV------LWSLMLVGYVTCNVM 220
Query: 132 NEAMSLFSEMRDRELI 147
++A+S+F +M R+++
Sbjct: 221 DDALSVFVKMPRRDVV 236
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+AL F + + T+ C++ C L L +GR VH ++ + D +
Sbjct: 253 GKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGA 312
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++ Y +C +++DA V + V+ +P L + N++I G+ S +A +F+ M +
Sbjct: 313 LVEFYCECEAIDDALRVC-----KGVV-NPCLNALNSLIEGLISMGRIEDAELVFNGMTE 366
Query: 144 RELIPDGLTVRS 155
+ L ++
Sbjct: 367 MNPVSYNLMIKG 378
Score = 39.3 bits (90), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+++ N ++ Y K L+ AR + D+MPQR V+ SWN +I+ + +EA+
Sbjct: 71 EIISTNIAISNYAKQSKLDVARQLFDQMPQRTVV------SWNTMISSYSKHGRFSEALF 124
Query: 137 LFSEMRDRELIPDGLTVRSLLCACT 161
L M + T S+L C
Sbjct: 125 LVYSMHRSHMKLSESTFSSVLSVCA 149
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 7/137 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F ++ R+ S+++ +STC+ + +L+LG+++H ++ + + N +
Sbjct: 387 EALRLFVLMEREGG-RLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNAL 445
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
L MY KCGS+E+A + EM + D+ SWN +IAG + EA+ F M+
Sbjct: 446 LLMYCKCGSIEEANDLFKEMAGK------DIVSWNTMIAGYSRHGFGEEALRFFESMKRE 499
Query: 145 ELIPDGLTVRSLLCACT 161
L PD T+ ++L AC+
Sbjct: 500 GLKPDDATMVAVLSACS 516
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N +++ Y + G E AR++ DEMP+R DL SWN +I G N +A LF M
Sbjct: 94 NAMISGYLRNGEFELARMLFDEMPER------DLVSWNVMIKGYVRNRNLGKARELFERM 147
Query: 142 RDREL 146
+R++
Sbjct: 148 PERDV 152
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 56 LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDL 115
+R+ LG+ + + DV N IL+ Y + G ++DAR V D MP++N +
Sbjct: 132 VRNRNLGKA--RELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDV----- 184
Query: 116 ASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
SWNA+++ S EA LF + L+
Sbjct: 185 -SWNALLSAYVQNSKLEEACVLFGSRENWALV 215
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+V N ++ Y +CG + +A+ + D+MP+R D SW A+IAG + ++ EA+
Sbjct: 337 NVSTWNTMITGYAQCGKISEAKNLFDKMPKR------DPVSWAAMIAGYSQSGHSYEALR 390
Query: 137 LFSEMRDRE 145
LF M +RE
Sbjct: 391 LFVLM-ERE 398
Score = 40.4 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
++ CL+ + + R+ D S DVV N I+ Y + G +++AR + DE
Sbjct: 216 SWNCLLGGFVKKKKIVEARQFFD----SMKVRDVVSWNTIITGYAQNGEIDEARQLFDES 271
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
P +V +W A+++G EA LF M +R
Sbjct: 272 PVHDVF------TWTAMVSGYIQNRMVEEARELFDRMPER 305
Score = 38.9 bits (89), Expect = 0.76, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
+Y +IS +L R + D + + D+V N ++ Y + +L AR + + M
Sbjct: 92 SYNAMISGYLRNGEFELARMLFDEM----PERDLVSWNVMIKGYVRNRNLGKARELFERM 147
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
P+R D+ SWN I++G A ++A +F M ++
Sbjct: 148 PER------DVCSWNTILSGYAQNGCVDDARRVFDRMPEK 181
Score = 38.5 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++S R ++ R++ D + + + V N +L Y + +E A+ + D M
Sbjct: 278 TWTAMVSGYIQNRMVEEARELFDRM----PERNEVSWNAMLAGYVQGERVEMAKELFDVM 333
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
P RNV ++WN +I G A +EA +LF +M R+
Sbjct: 334 PCRNV------STWNTMITGYAQCGKISEAKNLFDKMPKRD 368
Score = 35.8 bits (81), Expect = 6.7, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
DV +++ Y + +E+AR + D MP+RN + SWNA++AG A
Sbjct: 275 DVFTWTAMVSGYIQNRMVEEARELFDRMPERNEV------SWNAMLAGYVQGERVEMAKE 328
Query: 137 LFSEMRDREL 146
LF M R +
Sbjct: 329 LFDVMPCRNV 338
>gi|255542916|ref|XP_002512521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548482|gb|EEF49973.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 422
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 78/146 (53%), Gaps = 11/146 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y EAL F+ +Q +IRP + + +++ C++L +L GR +H ++ + D VL
Sbjct: 273 YKEALEVFNVMQEE---KIRPKKFVLSSVLAACANLGALDQGRWIHAYVKKNPMYLDAVL 329
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+++MY KCG L+ A V + M ++ V +WNA+I G+A A +A+ LF +
Sbjct: 330 GTALVDMYAKCGRLDMAWDVFETMKEKEVF------TWNAMICGLAMHGRAEDAIKLFLK 383
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M+ ++ + +T LL AC V
Sbjct: 384 MQKEKVRSNEITFVGLLNACAHKGMV 409
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 39/178 (21%)
Query: 9 LRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRI------------RPS--TYACLISTCS 54
L FT ++ P N++ ++ L N+ F+ RP+ TY L+ C
Sbjct: 81 LAFTVFDHVPKPNVFVYNIIIKACLDNDEPFKAICFYYKMVAANARPNKFTYPSLLKACG 140
Query: 55 SLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI---- 110
+ + G ++H H++ DV +++ + MY G + AR + DE + +VI
Sbjct: 141 VATAAKEGVQLHGHVIKQGLTGDVHIRSAGIQMYATLGHMAAARRMLDEDGESDVICFNA 200
Query: 111 ---------------------ESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
E + SWN +++G+A EA LF++MR+++ I
Sbjct: 201 MIDGYYKFGDVDSAKELFEKMEDRSVGSWNVMVSGLAKNGMVKEARELFNDMREKDEI 258
>gi|449484072|ref|XP_004156776.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Cucumis sativus]
Length = 754
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 11/158 (6%)
Query: 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLI--STCSSLRSLQLGRKVHDHI 69
T +S + EA++ FD + ++ P+ C+I S C+ L SL G K+H +I
Sbjct: 482 TLISSYKQSGILAEAIILFDKMVKE---KVYPNKVTCIIVLSACAHLASLDEGEKIHQYI 538
Query: 70 LSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPS 129
+ + ++ ++ +++MY KCG LE +R + + +R+VI WN +I+
Sbjct: 539 KENGFESNITIRTALIDMYAKCGELETSRKLFNSTEERDVI------LWNVMISNYGMHG 592
Query: 130 NANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
+ AM +F M + + P+ T SLL AC +VL
Sbjct: 593 HVESAMEIFQLMEESNIKPNAQTFLSLLSACNHTGHVL 630
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
+IS+CS + ++ +GR +H + + + +V + N +++MYGK G + + QR+
Sbjct: 417 VISSCSQVGAINIGRSIHCYAIKNSIIENVSVANSLMDMYGKSGHVTATWRIFHRTLQRD 476
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
VI SWN +I+ EA+ LF +M ++ P+ +T +L AC
Sbjct: 477 VI------SWNTLISSYKQSGILAEAIILFDKMVKEKVYPNKVTCIIVLSAC 522
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 53 CSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIES 112
C L +L G+ +H L + V+++ IL+MY +CGS E+A ++ Q+
Sbjct: 220 CVDLDALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAYRCFCKLDQK----- 274
Query: 113 PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
DL SW +IIA + +E + LF EM+ E+IPD + + +L
Sbjct: 275 -DLISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCML 318
Score = 42.7 bits (99), Expect = 0.053, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 13/137 (9%)
Query: 29 AFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQ---PDVVLQNY 83
AFDF P+ + ++STC+ L G +H L+SK + + +
Sbjct: 92 AFDFYLQMRASSSLPNQFTVPMVVSTCAELMMFNHGMNIHG--LTSKLGLFVGNSAIGSS 149
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+ MY KCG +E A ++ E+ ++V+ +W A+I G + + + EM
Sbjct: 150 FIYMYSKCGHVESASIMFSEITVKDVV------TWTALIVGYVQNNESGRGLKCLFEMHR 203
Query: 144 RELIPDGLTVRSLLCAC 160
P+ T+ S AC
Sbjct: 204 IGGTPNYKTIGSGFQAC 220
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
L +N + T+ L+S C+ + GR + D + +P + I+++ G+ G
Sbjct: 603 LMEESNIKPNAQTFLSLLSACNHTGHVLEGRHLFDRMQKYGIEPSLKHYASIIDLLGRSG 662
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124
SLE A + MP +PD W ++++
Sbjct: 663 SLEAAEALVLSMPI-----TPDGTVWGSLLSA 689
>gi|356515240|ref|XP_003526309.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 560
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
LY E L F NF TY ++ C L ++GRKVH ++ + DV +
Sbjct: 53 LYREML---HFGHKPDNF-----TYPFVLKACGDLLLREIGRKVHALVVVGGLEEDVYVG 104
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N IL+MY G + ARV+ D+MP R DL SWN +++G A A +F +M
Sbjct: 105 NSILSMYFTFGDVAAARVMFDKMPVR------DLTSWNTMMSGFVKNGEARGAFEVFGDM 158
Query: 142 RDRELIPDGLTVRSLLCAC 160
R + DG+T+ +LL AC
Sbjct: 159 RRDGFVGDGITLLALLSAC 177
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV---LQNYILNMYGKCGSLEDARVVS 101
T L+S C + L+ GR++H +++ + + L N I+ MY C S+ AR +
Sbjct: 169 TLLALLSACGDVMDLKAGREIHGYVVRNGGNRRLCNGFLMNSIICMYCNCESMSFARKLF 228
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ + ++V+ SWN++I+G +A + LF M +PD +TV S+L AC
Sbjct: 229 EGLRVKDVV------SWNSLISGYEKCGDAFLVLELFGRMVVVGAVPDEVTVTSVLGACN 282
Query: 162 SPS 164
S
Sbjct: 283 QIS 285
>gi|347954490|gb|AEP33745.1| chloroplast biogenesis 19, partial [Arabis hirsuta]
Length = 435
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 81/143 (56%), Gaps = 11/143 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ + EAL F +Q + ++P A + ++ C++L +L G +H +++S + +
Sbjct: 127 KGFHEEALAWFREMQISG---VKPDYVAIIAALAACTNLGALSFGLWIHRYVVSQDFKNN 183
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + N ++++Y +CG +E AR V D+M +R V+ SWN++I G A+ +A+E++
Sbjct: 184 VRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVV------SWNSVIVGFAANGHAHESLVY 237
Query: 138 FSEMRDRELIPDGLTVRSLLCAC 160
F +M++ P+ +T L AC
Sbjct: 238 FRKMQEEGFKPNAVTFTGALAAC 260
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+ + V N +++ Y + G ++DA + DEMP+R DL SW A+I G EA
Sbjct: 80 EKNSVTWNTMIDGYMRNGQVDDAVKLFDEMPER------DLISWTAMINGFVKKGFHEEA 133
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCACT 161
++ F EM+ + PD + + + L ACT
Sbjct: 134 LAWFREMQISGVKPDYVAIIAALAACT 160
>gi|302798655|ref|XP_002981087.1| hypothetical protein SELMODRAFT_16872 [Selaginella moellendorffii]
gi|300151141|gb|EFJ17788.1| hypothetical protein SELMODRAFT_16872 [Selaginella moellendorffii]
Length = 150
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 67/117 (57%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
+A + CS + + LG+K++ + S +PD+++QN +++MY KCG L++AR E+
Sbjct: 40 VFASAFTACSMVGEIDLGKKLYARFVESGLKPDLIVQNALMSMYAKCGDLDEARRTFLEL 99
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P R D+ +W ++AG A + A+ L++ MRD ++ + +L+ AC+
Sbjct: 100 PTR------DVGAWACLMAGYAQHGDFARALELYNRMRDEKVEANAAIFSTLIAACS 150
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 76/138 (55%), Gaps = 7/138 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
NEAL FD ++ + +T L+S C+ L +L G +H +I ++ + + ++
Sbjct: 176 NEALALFDQMRA-VGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTA 234
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+++MY KCG + A V N +ES D+ +WN IIAG+A + EA LF EM++
Sbjct: 235 LVDMYAKCGKISLATQVF------NAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKE 288
Query: 144 RELIPDGLTVRSLLCACT 161
+ P+ +T ++L AC+
Sbjct: 289 ASVEPNDITFVAMLSACS 306
Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 25/109 (22%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI-----------------------ESP 113
DV+ N I+N Y G +++A+ + DEMP+RN++ E P
Sbjct: 96 DVISWNTIINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMP 155
Query: 114 --DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
D+ SWN+++A A NEA++LF +MR + P TV SLL AC
Sbjct: 156 CRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSAC 204
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 HILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127
+ S S DVV N +++ Y K G + R+V D M R+VI SWN II G A
Sbjct: 56 QLFSLCSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVI------SWNTIINGYAI 109
Query: 128 PSNANEAMSLFSEMRDRELI 147
+EA LF EM +R L+
Sbjct: 110 VGKIDEAKRLFDEMPERNLV 129
>gi|18397896|ref|NP_565377.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216221|sp|Q9ZQE5.2|PP153_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g15690
gi|14335136|gb|AAK59848.1| At2g15690/F9O13.24 [Arabidopsis thaliana]
gi|20197709|gb|AAD17413.2| Expressed protein [Arabidopsis thaliana]
gi|29028728|gb|AAO64743.1| At2g15690/F9O13.24 [Arabidopsis thaliana]
gi|330251336|gb|AEC06430.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 579
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 6/121 (4%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+ L +C++L+SL+ +KVHDH L SK + D L N +++M+G+C S+ DA+ V D M
Sbjct: 239 FVLLFESCANLKSLEHSKKVHDHFLQSKFRGDPKLNNMVISMFGECSSITDAKRVFDHMV 298
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165
+ D+ SW+ ++ + ++A+ LF EM L P+ T ++ AC +
Sbjct: 299 DK------DMDSWHLMMCAYSDNGMGDDALHLFEEMTKHGLKPNEETFLTVFLACATVGG 352
Query: 166 V 166
+
Sbjct: 353 I 353
>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
Length = 624
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P Y I+ C+ ++L+ RK+H H+ SS+ D L N +++MY KC S+ DAR V D
Sbjct: 51 PRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFD 110
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+M ++ D+ SW ++IAG A EA+ L M P+G T SLL A
Sbjct: 111 QMRRK------DMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKA 161
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 73/136 (53%), Gaps = 7/136 (5%)
Query: 26 ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
AL+ F + N F TY+ + S+ + L +L+ G+ VH H++ S+ + + N +L
Sbjct: 237 ALMTFAEMLRN-GFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLL 295
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+MY K GS+ DAR V D +++ DL +WN+++ A EA+S F EMR
Sbjct: 296 DMYAKSGSMIDARKVFDR------VDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSG 349
Query: 146 LIPDGLTVRSLLCACT 161
+ + +T +L AC+
Sbjct: 350 VYLNQITFLCILTACS 365
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
R +P+ T+A L+ + GR++H + DV + + +L+MY +CG ++ A
Sbjct: 147 RFKPNGFTFASLLKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMA 206
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
V D++ +N + SWNA+I+G A + A+ F+EM
Sbjct: 207 TAVFDKLDSKNGV------SWNALISGFARKGDGESALMTFAEM 244
>gi|302756227|ref|XP_002961537.1| hypothetical protein SELMODRAFT_626 [Selaginella moellendorffii]
gi|300170196|gb|EFJ36797.1| hypothetical protein SELMODRAFT_626 [Selaginella moellendorffii]
Length = 675
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 83/159 (52%), Gaps = 25/159 (15%)
Query: 26 ALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
AL FD ++ + IRP + + C +L L +GRK+H I +++ + ++++ N
Sbjct: 199 ALEVFDAMEGDG---IRPDKCVFVSALEACGALGDLAVGRKIHRRIATARMEENLIVANG 255
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN------------- 130
++ MYGKCG +E+AR V D PQR+ L SWN +IA A +
Sbjct: 256 LIAMYGKCGGVEEARAVFDSTPQRS------LLSWNLMIAAYAQNGHPRHCSIGCPRGIW 309
Query: 131 -ANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
A EA++ F M + P+ +T S+L AC+S +++ +
Sbjct: 310 WAEEALAGFRIMDLDGIQPNRVTFLSILDACSSLASIEF 348
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 18/129 (13%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TYA LI C+ R++ GR+VH HI S D L N ++ M+G+ G + DA V D +
Sbjct: 4 TYAVLIRQCTLARAVPEGRRVHAHI-SKHGCRDSFLLNLLVQMFGRFGCVADASRVFDSI 62
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM--RDRELI---------PDGLTV 153
P RN SWN ++A A + +A F +M DR L D +T
Sbjct: 63 PARNCY------SWNIMVAAFAQNGHLQQARITFDQMPPSDRSLFALMDLDGIRADTITF 116
Query: 154 RSLLCACTS 162
S++ AC+S
Sbjct: 117 VSVIDACSS 125
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 14/154 (9%)
Query: 8 QLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHD 67
Q R TF + P + AL+ D ++ +T T+ +I CSSLR + LG VH
Sbjct: 85 QARITF-DQMPPSDRSLFALMDLDGIRADT------ITFVSVIDACSSLRRIDLGIAVHV 137
Query: 68 HILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127
S ++ + +++MYGKC LE ++ + D M +RN++ +W A+I A
Sbjct: 138 EARESGTEMHYAVATALVSMYGKCRRLERSKEMFDRMEERNMV------TWTAMITAYAQ 191
Query: 128 PSNAN-EAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ + A+ +F M + PD S L AC
Sbjct: 192 NAQLDWAALEVFDAMEGDGIRPDKCVFVSALEAC 225
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 42/169 (24%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
EAL F + + I+P+ T+ ++ CSSL S++ GR VH I+ S DV +
Sbjct: 313 EALAGFRIMDLDG---IQPNRVTFLSILDACSSLASIEFGRVVHACIVDSCFAGDVHVGT 369
Query: 83 YILNMYGKC-------------------------------GSLEDARVVSDEMPQRNVIE 111
++ M+G+C G L+ AR++ D+MP+RNVI
Sbjct: 370 SLVTMFGRCEHAQEADAAFHAIVAKNILAWTAILSANALSGHLDAARMLFDQMPERNVI- 428
Query: 112 SPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
SW +I+ A + EA LF M P+ +T L AC
Sbjct: 429 -----SWTGMISAYAYSGHRREAHDLFKAMDLLGQRPNKITYLKALEAC 472
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 42 RPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP+ TY + C+ + R +H + S D + +LN++ KCGSL A
Sbjct: 459 RPNKITYLKALEACAGGITAAEARTIHAKAIESGYSSDTQVAVGLLNLFEKCGSLAIAER 518
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V D++ +R + +W+ +I+ A ++ LF+EM ++P +TV +LL A
Sbjct: 519 VFDDLGERKTV-----VAWSIMISAYAQSGRPWRSLELFTEMVQSGVMPTEITVVNLLSA 573
Query: 160 CT 161
C+
Sbjct: 574 CS 575
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 51/186 (27%), Positives = 87/186 (46%), Gaps = 33/186 (17%)
Query: 7 TQLRFTFYNSQPIQNL-YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKV 65
T LR +S P+ L +++ L N+ T+ L+ +C+ ++ + G+++
Sbjct: 36 TMLRGYALSSDPVSALKLYVVMISLGLLPNSY-------TFPFLLKSCAKSKAFEEGQQI 88
Query: 66 HDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI--------------- 110
H H+L +PD+ + +++MY + G LEDA V D R+V+
Sbjct: 89 HGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNI 148
Query: 111 --------ESP--DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
E P D+ SWNA+I+G A + EA+ LF EM + PD T+ ++L AC
Sbjct: 149 RSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSAC 208
Query: 161 TSPSNV 166
+V
Sbjct: 209 AQSRSV 214
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 19/148 (12%)
Query: 21 NLYNEALVAF-DFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
NLY EAL+ F + L++ + P+ T ++ C+ L ++ +GR +H +I K D
Sbjct: 278 NLYKEALLLFQEMLRSGES----PNDVTIVSILPACAHLGAIDIGRWIHVYI--DKKLKD 331
Query: 78 VV----LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
V L+ +++MY KCG +E A V + M ++ L+SWNA+I G A AN
Sbjct: 332 VTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKS------LSSWNAMIFGFAMHGRANA 385
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACT 161
LFS MR + PD +T LL AC+
Sbjct: 386 GFDLFSRMRKNGIEPDDITFVGLLSACS 413
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y EAL F + TN R T ++S C+ RS++LGR+VH I ++ + N
Sbjct: 179 YKEALELFKEMMK-TNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVN 237
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++++Y KCG +E A + + + ++V+ SWN +I G + EA+ LF EM
Sbjct: 238 ALIDLYSKCGQVETACGLFEGLSCKDVV------SWNTLIGGYTHMNLYKEALLLFQEML 291
Query: 143 DRELIPDGLTVRSLLCAC 160
P+ +T+ S+L AC
Sbjct: 292 RSGESPNDVTIVSILPAC 309
>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
lyrata]
gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
lyrata]
Length = 684
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 70/120 (58%), Gaps = 8/120 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++S C+ + L+LGR +H H + + + ++ + + +++MYGKCG +ED+ DEMP++N
Sbjct: 316 VLSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKN 375
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL--IPDGLTVRSLLCACTSPSNV 166
++ + N++I G A + A++LF +M R P+ +T SLL AC+ V
Sbjct: 376 LV------TLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAV 429
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSS-KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQR 107
L+ S S++LGR VH I+ + S P L NY++NMY K E AR+V P R
Sbjct: 12 LLKNAISTSSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPAR 71
Query: 108 NVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
NV+ SW ++++G+A + + A+ F EMR + P+ T + A S
Sbjct: 72 NVV------SWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVAS 120
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ C+ +SLR G+++H + DV + +MY K +DAR + DE+
Sbjct: 110 TFPCVFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEI 169
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P+RN L +WNA I+ + EA+ F E R P+ +T L AC S
Sbjct: 170 PERN------LETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNAC---S 220
Query: 165 NVLYLD 170
+ L LD
Sbjct: 221 DGLLLD 226
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 15/167 (8%)
Query: 3 RNLKTQLRF---TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSL 59
RNL+T + + + +P + + EA + F + N T+ ++ CS L
Sbjct: 172 RNLETWNAYISNSVTDGRPKEAI--EAFIEFRRIGGQPN----SITFCGFLNACSDGLLL 225
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
LG ++H + S DV + N +++ YGKC + + ++ EM +N + SW
Sbjct: 226 DLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAV------SWC 279
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+++A +A L+ R + + S+L AC + +
Sbjct: 280 SLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGL 326
>gi|302142318|emb|CBI19521.3| unnamed protein product [Vitis vinifera]
Length = 768
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A L++ CS + LQ G ++H+++L + + L+ +++MY KCG LE A V
Sbjct: 508 TIASLLAGCSEVGFLQFGERLHNYVLRNNLDMEDFLETALVDMYIKCGRLESAERVFKS- 566
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
I+ P LA+WN +I+G + + A+S +SEM+++ L PD +T +L ACT
Sbjct: 567 -----IKEPCLATWNTMISGYGLSGHEHRALSCYSEMQEQGLKPDRITFLGVLSACTHGG 621
Query: 165 NV 166
V
Sbjct: 622 LV 623
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
G +H + L + D ++ N +++MY K G +E + EM ++ +I SWN++
Sbjct: 424 GLGIHAYGLKTGLCADCLVVNGLISMYSKFGDIETVFSLFSEMGEKQLI------SWNSV 477
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I+ ++AM LF +MR PD +T+ SLL C+
Sbjct: 478 ISACIQVGRTSDAMELFCQMRMYGHSPDAITIASLLAGCS 517
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 64 KVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIA 123
++ H+ S V L L+ YGK G + A+ + +EMP+R+V+ SWNA+I
Sbjct: 179 QIQTHLRKSGFNQYVYLTTAFLDFYGKLGCIYYAQHLFEEMPRRDVV------SWNALIC 232
Query: 124 GVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
G + +A+ +F +M P T+ L+ +C P +
Sbjct: 233 GYSRNGYDYDALEVFVQMLREGFPPCQRTLVGLVPSCGRPDIIF 276
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 73 KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNAN 132
K + +V I+ Y CG++E A ++ + MPQRN L S A+I+G A N
Sbjct: 334 KERVEVNYVTIIMCSYAGCGNIESAGLLYNLMPQRN------LVSLTAMISGYAEKGNMG 387
Query: 133 EAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+ F++M ++ PD + + S+L T P+ +
Sbjct: 388 LVVECFTQMLQLKMKPDAVAMVSILHGFTDPTFI 421
>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
DEFECTIVE 247; Flags: Precursor
gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
thaliana gb|AC007109.6, and contains two DUF17 PF|01535
domains [Arabidopsis thaliana]
gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
Length = 500
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 80/139 (57%), Gaps = 11/139 (7%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
EAL+ F +Q + ++P A + ++ C++L +L G VH ++LS + +V + N
Sbjct: 189 EALLWFREMQISG---VKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSN 245
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++++Y +CG +E AR V M +R V+ SWN++I G A+ NA+E++ F +M+
Sbjct: 246 SLIDLYCRCGCVEFARQVFYNMEKRTVV------SWNSVIVGFAANGNAHESLVYFRKMQ 299
Query: 143 DRELIPDGLTVRSLLCACT 161
++ PD +T L AC+
Sbjct: 300 EKGFKPDAVTFTGALTACS 318
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
+I S + R V D++ S V N +++ Y + G +++A + D+MP+R
Sbjct: 115 IIGMYSKRGRFKKARLVFDYMEDKNS----VTWNTMIDGYMRSGQVDNAAKMFDKMPER- 169
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
DL SW A+I G EA+ F EM+ + PD + + + L ACT
Sbjct: 170 -----DLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACT 217
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 13/145 (8%)
Query: 21 NLYNEALVAF-DFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHI---LSSKSQP 76
NLY EAL+ F + L++ + T ++ C+ L ++ +GR +H +I L S P
Sbjct: 315 NLYKEALLLFQEMLRSGES--PNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNP 372
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
L+ +++MY KCG +E A+ V D M R+ L+SWNA+I G A AN A
Sbjct: 373 SS-LRTSLIDMYAKCGDIEAAQQVFDSMLNRS------LSSWNAMIFGFAMHGRANPAFD 425
Query: 137 LFSEMRDRELIPDGLTVRSLLCACT 161
+FS MR + PD +T LL AC+
Sbjct: 426 IFSRMRKDGIEPDDITFVGLLSACS 450
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 33/186 (17%)
Query: 7 TQLRFTFYNSQPIQNLY-NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKV 65
T R +S P+ LY +++ + N+ T+ L+ C+ ++ + G+++
Sbjct: 73 TMFRGHALSSDPVSALYLYVCMISLGLVPNSY-------TFPFLLKACAKSKAFREGQQI 125
Query: 66 HDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI--------------- 110
H H+L D+ + ++ MY K G EDAR V D+ R+V+
Sbjct: 126 HGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYI 185
Query: 111 --------ESP--DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
E P D+ SWNA+I+G A N EA+ LF EM + PD T+ ++L AC
Sbjct: 186 XSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSAC 245
Query: 161 TSPSNV 166
+++
Sbjct: 246 AQSASI 251
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 7/139 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y EAL F + TN + ST ++S C+ S++LGR+VH I ++ + N
Sbjct: 216 YKEALELFKEMMK-TNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVN 274
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++++Y KCG +E A + + + ++VI SWN +I G + EA+ LF EM
Sbjct: 275 ALIDLYIKCGEVETASGLFEGLSYKDVI------SWNTLIGGYTHMNLYKEALLLFQEML 328
Query: 143 DRELIPDGLTVRSLLCACT 161
P+ +T+ S+L AC
Sbjct: 329 RSGESPNEVTMLSILPACA 347
>gi|449508249|ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 840
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +++ C+S+ + GR+VH I+ S P+V +Q+ +++MY KCG L AR++ D M
Sbjct: 238 TFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTM 297
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
E D+ WN++I G + EA+ LF +M +R++ D T S+L + S
Sbjct: 298 ------EIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCK 351
Query: 165 NV 166
N+
Sbjct: 352 NL 353
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
AC+ S C+ L ++ GR+VH + + S + + +N ++ MY KCG LEDA V D M
Sbjct: 442 ACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVXDSMET 501
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
RNVI SW AII G A S F M
Sbjct: 502 RNVI------SWTAIIVGYAQNGLVETGQSYFESM 530
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 42 RPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
+PS Y ++ CS+L L G+ +H + + + + ++ + +++MY KC L +A
Sbjct: 131 KPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEY 190
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ +P R + W A++ G A + +A+ F EMR++ + + T S+L A
Sbjct: 191 LFFSLPDR-----KNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTA 245
Query: 160 CTSPS 164
CTS S
Sbjct: 246 CTSIS 250
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EALV F + N + RI TY ++ + +S ++L++G VH + + + N +
Sbjct: 320 EALVLFHKMHNR-DIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNAL 378
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MY K G+L A V +++ ++VI SW +++ G +A+ LF +MR
Sbjct: 379 VDMYAKQGNLSCALDVFNKILDKDVI------SWTSLVTGYVHNGFHEKALQLFCDMRTA 432
Query: 145 ELIPDGLTVRSLLCACT 161
+ D V + AC
Sbjct: 433 RVDLDQFVVACVFSACA 449
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D N +++ Y G+L +AR + +E P N I +W+++++G E +
Sbjct: 67 DKYTWNIMISAYANLGNLVEARKLFNETPIXNSI------TWSSLVSGYCKNGCEVEGLR 120
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPS 164
FS+M P T+ S+L AC++ S
Sbjct: 121 QFSQMWSDGQKPSQYTLGSVLRACSTLS 148
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +L+ K G +++AR + D+MP R D +WN +I+ A+ N EA LF+E
Sbjct: 41 NQLLSELSKNGRVDEARKLFDQMPYR------DKYTWNIMISAYANLGNLVEARKLFNE 93
>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Cucumis sativus]
gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Cucumis sativus]
Length = 667
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 25/150 (16%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
PS ++ L+ +C L SL G++VH I++S D + N++LN Y K G + + V+
Sbjct: 62 PSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFS 121
Query: 103 EMPQRNV---------------IESP----------DLASWNAIIAGVASPSNANEAMSL 137
MP+RNV +ES ++A+WNA+IAG+ +A+SL
Sbjct: 122 NMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSL 181
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
F EM +PD T+ S+L C ++L
Sbjct: 182 FKEMYGLGFLPDEFTLGSVLRGCAGLRSLL 211
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ C+ LRSL G++VH +L + V+ + + +MY K GSL D + M
Sbjct: 196 TLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSM 255
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P R V+ +WN +IAG A E ++ ++ M+ PD +T S+L AC+
Sbjct: 256 PIRTVV------AWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACS 306
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 66/126 (52%), Gaps = 8/126 (6%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
FR T+ ++S CS L +L G+++H ++ + + + + + +++MY + G LED
Sbjct: 289 AGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLED 348
Query: 97 A-RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
+ + D E+ D+ W+++IA EA+ LF +M D ++ + +T S
Sbjct: 349 SIKAFVDR-------ENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLS 401
Query: 156 LLCACT 161
LL AC+
Sbjct: 402 LLYACS 407
>gi|242065790|ref|XP_002454184.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
gi|241934015|gb|EES07160.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
Length = 530
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 72/123 (58%), Gaps = 6/123 (4%)
Query: 39 FRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
FR +T +C++S C L L++G+ +H + + + N +++MYGKCG+LE AR
Sbjct: 247 FRPNATTVSCVLSACGHLGMLKIGKLIHCYAWRTCVGFGSSVLNGLIDMYGKCGNLEGAR 306
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+ DE+ R+ L +WN++I +A ++ A+S+F+EMR + PD +T LL
Sbjct: 307 WIFDEVSDRS------LTTWNSLINCLALHGHSKCAISVFNEMRGEGVEPDVVTFVGLLN 360
Query: 159 ACT 161
ACT
Sbjct: 361 ACT 363
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
RK+ D + ++ +VV +++ Y + G + DA V+ + MP+R D+A+WNAI
Sbjct: 173 ARKLFDGL----TERNVVSWTALVSGYARAGKVGDAIVLFERMPER------DVAAWNAI 222
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
IAG + EA+ +F M P+ TV +L AC
Sbjct: 223 IAGCSQNGLFVEAVGIFGRMVGAGFRPNATTVSCVLSAC 261
>gi|302756319|ref|XP_002961583.1| hypothetical protein SELMODRAFT_76916 [Selaginella moellendorffii]
gi|300170242|gb|EFJ36843.1| hypothetical protein SELMODRAFT_76916 [Selaginella moellendorffii]
Length = 493
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y +I TC+SL +L+ GR++H I + DV + + ++NMYGKCG LEDAR V
Sbjct: 175 YTSVIDTCTSLGALEEGRRIHSQIAKQGLETDVAVGSALVNMYGKCGDLEDARAVF---- 230
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165
IE D +W +++ A + + A +F M D +T+ S+L C+ S+
Sbjct: 231 --AGIEGKDRCAWTSMLGAYAQHGDGDRAFQVFQTMDLEGEKSDPITLISVLSVCSDKSS 288
Query: 166 VL 167
L
Sbjct: 289 AL 290
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC-GSLEDA 97
++PS T+ ++ +C+ R L G ++H ++ + DVV +LNMYG+C G A
Sbjct: 54 VKPSRVTFLGVLDSCNGARGLAAGLEIHARMVEGGFESDVVACTALLNMYGRCSGDARAA 113
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
R V D M R DL SWNAI+ + + EA+ L+ +M
Sbjct: 114 RAVFDGMEVR------DLVSWNAIVVVYSQKAQCEEAVKLYRQM 151
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 43 PSTYACLISTCSSLRS-LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
P T ++S CS S L G+ +H I S + D ++ +++MY CGSL AR
Sbjct: 273 PITLISVLSVCSDKSSALSQGKAIHSSISGSGLELDGLVATALIDMYATCGSLRTARNFF 332
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
D + + D+ W+AII+G + + E+ +LF M+ L PD T+ S+L A
Sbjct: 333 DAIQAKG-----DVVLWSAIISGYSQHGDWEESTTLFRLMQLEGLEPDNRTITSVLSA 385
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MYGKCG +++AR V + + RNV SWN +IA A ++ +A +F + +
Sbjct: 1 MYGKCGKVDEARRVFEAILDRNVF------SWNLMIAAYARHGHSRDAWEVFRRIDLEGV 54
Query: 147 IPDGLTVRSLLCACTSPSNV 166
P +T +L +C +
Sbjct: 55 KPSRVTFLGVLDSCNGARGL 74
>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
Length = 592
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 4/116 (3%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY LI C+ L +L+ G +H + V +QN ++++YG CG E A V DEM
Sbjct: 118 TYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEM 177
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P R +L SWN+++ A+ NE +++F EM + PDG T+ S+L AC
Sbjct: 178 PVR----GRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTAC 229
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T +++ C+ +L LGR+VH ++ + + N ++++Y KCGS+ DAR + +EM
Sbjct: 221 TIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEM 280
Query: 105 P-QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R V+ SW ++I G+A+ EA+ LFS M +L+P +T+ +L AC+
Sbjct: 281 GLGRTVV------SWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACS 332
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 81/144 (56%), Gaps = 11/144 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
Q L+ EAL F +Q ++P T ++++C++L L+LG+ VH +I + + D
Sbjct: 317 QGLFKEALHMFRRMQT---MGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKAD 373
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ N +++MY KCGS++ A +V M + D+ S+ A+I G A A+ A+++
Sbjct: 374 GYVANALVDMYAKCGSIDQAFMVFQAM------KCKDVYSYTAMIVGFAMHGKADRALAI 427
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
FSEM + PD +T+ +L AC+
Sbjct: 428 FSEMPRMGVRPDHVTLVGVLSACS 451
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 73/141 (51%), Gaps = 14/141 (9%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKV---HDHILSSKSQPDVVL 80
+EA+ AF F N T R+ T ++S CS L LG+K+ DH L DV L
Sbjct: 221 SEAIAAF-FRMNCTADRM---TLVVVLSACSQLGDFTLGKKILAYMDHHLFD-VHSDVFL 275
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +L+MY KCG AR + MP +N L SWN++I+G+A EA+ +F
Sbjct: 276 GNALLDMYLKCGQPHLARQLFHLMPVKN------LVSWNSMISGLAHQGLFKEALHMFRR 329
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M+ L PD +T+ +L +C
Sbjct: 330 MQTMGLKPDSVTLVGVLNSCA 350
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 41 IRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ P TY L+ CS + ++H H + + ++ ++N ++ Y G +E
Sbjct: 134 LSPDTYTLPYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVE 193
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V D+ P DL SW +I + +EA++ F M D +T+ +L
Sbjct: 194 KVFDQGPHW------DLISWTTLIQAYSKMGYPSEAIAAFFRM---NCTADRMTLVVVLS 244
Query: 159 ACT 161
AC+
Sbjct: 245 ACS 247
>gi|302775606|ref|XP_002971220.1| hypothetical protein SELMODRAFT_95215 [Selaginella moellendorffii]
gi|300161202|gb|EFJ27818.1| hypothetical protein SELMODRAFT_95215 [Selaginella moellendorffii]
Length = 492
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y +I TC+SL +L+ GR++H I + DV + + ++NMYGKCG LEDAR V
Sbjct: 174 YTSVIDTCTSLGALEEGRRIHSQIAKQGLETDVAVGSALVNMYGKCGDLEDARAVF---- 229
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165
IE D +W +++ A + + A +F M D +T+ S+L C+ S+
Sbjct: 230 --AGIEGKDRCAWTSMLGAYAQHGDGDRAFQVFQTMDLEGEKSDPITLISVLSVCSDKSS 287
Query: 166 VL 167
L
Sbjct: 288 AL 289
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 9/112 (8%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC-GSLEDA 97
++PS T+ ++ +CS R L G ++H ++ + DVV +LNMYG+C G A
Sbjct: 54 VKPSRVTFLGVLDSCSGARGLAAGLEIHARMVEGGFESDVVACTALLNMYGRCSGDARAA 113
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD 149
R V D M R DL SWNAI+ + + EA+ L+ +M + + PD
Sbjct: 114 RAVFDGMEVR------DLVSWNAIVVVYSQKAQCEEAVKLYRQMLLQGVQPD 159
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 43 PSTYACLISTCSSLRS-LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
P T ++S CS S L G+ +H I S + D ++ +++MY CGSL AR
Sbjct: 272 PITLISVLSVCSDKSSALSQGKAIHSSISGSGLELDGLVATALIDMYATCGSLRTARDFF 331
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
D + + D+ W+AII+G + + E+ +LF M+ L PD T+ S+L A
Sbjct: 332 DAIQAKG-----DVVLWSAIISGYSQHGDWEESTTLFRLMQLEGLEPDNRTITSVLSA 384
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MYGKCG +++AR V + + RNV SWN +IA A ++ +A +F + +
Sbjct: 1 MYGKCGKVDEARRVFEAILDRNVF------SWNLMIAAYARHGHSRDAWEVFRRIDLEGV 54
Query: 147 IPDGLTVRSLLCACTSPSNV 166
P +T +L +C+ +
Sbjct: 55 KPSRVTFLGVLDSCSGARGL 74
>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 8/135 (5%)
Query: 29 AFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A F +N + + YA ++ +CS L +LQLG++VH +L S +P+ + + ++
Sbjct: 289 ALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIF 348
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG +EDAR D P+ + I +WN++I G A A+ LF M+DR +
Sbjct: 349 MYSKCGVIEDARKSFDATPKDSSI------AWNSLIFGYAQHGRGKIALDLFFLMKDRRV 402
Query: 147 IPDGLTVRSLLCACT 161
D +T ++L AC+
Sbjct: 403 KLDHITFVAVLTACS 417
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
I T+A L++ +L +VH I+ D + N I+ Y +CGS+EDA
Sbjct: 198 EIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAER 257
Query: 100 VSDEMPQRNVIESPDL--ASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
V D IE+ DL SWN+I+ G + + +A+ F MR + ++ D ++L
Sbjct: 258 VFD-----GAIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVL 312
Query: 158 CACT 161
+C+
Sbjct: 313 RSCS 316
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 29 AFDFLQN--NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A +FL++ F + ++ ++ + + +++G++VH ++ + +V + +L+
Sbjct: 84 ALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLD 143
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
MY KC +EDA V + RN + +WNA+I+G A + A L M
Sbjct: 144 MYAKCERVEDAFEVFKSINIRNSV------TWNALISGYAQVGDRGTAFWLLDCME 193
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Query: 67 DHILSSKS--QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124
+H L+ KS + N I++ Y KCG + A + E QR D SWN +IAG
Sbjct: 21 NHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQR------DAVSWNTMIAG 74
Query: 125 VASPSNANEAMSLFSEMRDRELIPDGLTVRSLL--CACTSPSNV 166
+ N A+ M+ DG + S+L AC V
Sbjct: 75 FVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEV 118
>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
Length = 779
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 7/137 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EA + F +Q N + +T LI CS L +LQ GR H ++ + + N +
Sbjct: 390 EAFLVFKKMQA-CNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSL 448
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MY KCG ++ +R V D+MP R D+ SWN +IAG EA +LF M+++
Sbjct: 449 IDMYAKCGRIDLSRQVFDKMPAR------DIVSWNTMIAGYGIHGLGKEATTLFLSMKNQ 502
Query: 145 ELIPDGLTVRSLLCACT 161
PD +T L+ AC+
Sbjct: 503 GFEPDDVTFICLIAACS 519
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 70/132 (53%), Gaps = 9/132 (6%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A D ++ FR+ P+ T+ ++ CS+L L GR +H H + D+ + +++
Sbjct: 83 AIDLYRSMLYFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALID 142
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR-E 145
+Y +C A V +MP R+V+ +WNA++AG A+ + A++ +M+DR
Sbjct: 143 LYIRCARFGPAANVFAKMPMRDVV------AWNAMLAGYANHGMYHHAIAHLLDMQDRGG 196
Query: 146 LIPDGLTVRSLL 157
L P+ T+ SLL
Sbjct: 197 LRPNASTLVSLL 208
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
++ A + C+SL L++G ++H + S D+ N +L+MY K G + +A ++ DE
Sbjct: 307 TSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDE 366
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ ++ I S+ A+++G A EA +F +M+ + PD T+ SL+ AC+
Sbjct: 367 IAIKDTI------SYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACS 418
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 9/125 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS---KSQP 76
+Y+ A+ +Q+ R ST L+ + +L G VH + L + +++
Sbjct: 178 HGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEE 237
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
V++ +L+MY KC L A V M RN + +W+A+I G EA +
Sbjct: 238 QVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEV------TWSALIGGFVLCDRMTEAFN 291
Query: 137 LFSEM 141
LF +M
Sbjct: 292 LFKDM 296
>gi|297837203|ref|XP_002886483.1| hypothetical protein ARALYDRAFT_338156 [Arabidopsis lyrata subsp.
lyrata]
gi|297332324|gb|EFH62742.1| hypothetical protein ARALYDRAFT_338156 [Arabidopsis lyrata subsp.
lyrata]
Length = 1243
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 22/164 (13%)
Query: 13 FYNSQPIQNL--YNEALVAFD-----------FLQNNTNF-RIRPSTYACLISTCSSLRS 58
++ P +N+ +N + A+D F++ N + + P T L+S + L +
Sbjct: 710 YFEKTPEKNIVSWNSIIAAYDKNKDYKEAVDVFIRMNIDGEKPDPHTLTSLLSVSTGLVN 769
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP-QRNVIESPDLAS 117
L+LG ++H I+ PDV + N ++ MY +CG + ++R + DEM +R VI +
Sbjct: 770 LRLGMQMH-QIVVKTVIPDVPVHNALITMYSRCGEIMESRRIFDEMKLKREVI------T 822
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
WNAII G A NA+EA++LF M+ + P +T S+L AC
Sbjct: 823 WNAIIGGYAFHGNASEALNLFWSMKCYGIHPSHITFVSVLNACA 866
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 13/106 (12%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS---LEDARVVS 101
T+ +IS R + RK+ D + + DVV N +++ Y CG LE+AR +
Sbjct: 417 TWNTMISGYVKRREMTQARKLFDEM----PERDVVTWNAMISGYVSCGGIRFLEEARKLF 472
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
DEMP R D SWN +I+G A +EA+ LF +M +R +
Sbjct: 473 DEMPSR------DSFSWNTMISGYAKNRRISEALLLFEKMPERNAV 512
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 66 HDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGV 125
H + + +VV N ++ Y K G + AR++ D+M R+ I SWN +I G
Sbjct: 614 HGGAFRERFRRNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTI------SWNTMIDGY 667
Query: 126 ASPSNANEAMSLFSEMRDRE 145
S ++A +LFSEM +R+
Sbjct: 668 VHVSRMDDAFALFSEMPNRD 687
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N +++ Y G+LE AR ++ P++N++ SWN+IIA + EA+ +F M
Sbjct: 692 NMMVSGYASVGNLELARHYFEKTPEKNIV------SWNSIIAAYDKNKDYKEAVDVFIRM 745
Query: 142 RDRELIPDGLTVRSLLCACTSPSNV 166
PD T+ SLL T N+
Sbjct: 746 NIDGEKPDPHTLTSLLSVSTGLVNL 770
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNA---NE 133
++V N +++ Y K + AR + DEMP+R+V+ +WNA+I+G S E
Sbjct: 414 NIVTWNTMISGYVKRREMTQARKLFDEMPERDVV------TWNAMISGYVSCGGIRFLEE 467
Query: 134 AMSLFSEMRDRE 145
A LF EM R+
Sbjct: 468 ARKLFDEMPSRD 479
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
LN + G + +AR + +++ RN++ +WN +I+G +A LF EM +R
Sbjct: 391 LNQMIRSGYIAEAREIFEKLEARNIV------TWNTMISGYVKRREMTQARKLFDEMPER 444
Query: 145 ELIPDGLTVRSLLCACTSPSNVLYLD 170
+++ T +++ S + +L+
Sbjct: 445 DVV----TWNAMISGYVSCGGIRFLE 466
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 22/94 (23%)
Query: 70 LSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP----------------QRNVIESP 113
L S + V N ++ YG+ G +E AR + D++P +RNV+
Sbjct: 571 LDSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCDDDDHGGAFRERFRRNVV--- 627
Query: 114 DLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
SWN++I + A LF +M+DR+ I
Sbjct: 628 ---SWNSMIKAYLKVGDVVSARLLFDQMKDRDTI 658
>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 74/137 (54%), Gaps = 7/137 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F +Q + T A ++S C+ L +L LGR++H H++ S ++++ N +
Sbjct: 394 EALELFRRMQL-AKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGL 452
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+NMY K GS ++ +V ++ IE+ DL SWN ++AG A+ F +M
Sbjct: 453 INMYTKSGSFKEGNLVFEK------IENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKD 506
Query: 145 ELIPDGLTVRSLLCACT 161
PDG+T ++L AC+
Sbjct: 507 GFEPDGVTFVAVLSACS 523
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +I C+ + S +L R VH H++ Q ++ + N ++ MYGK G ++DAR V + M
Sbjct: 137 TFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERM 196
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
R+ + SWN +++G A + + A +F M L P+ +T SLL +
Sbjct: 197 AVRSCV------SWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSS 245
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 33/147 (22%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
A ++S L + G+ +H +++ + + ++N ++ +YGK G++ AR++ E+
Sbjct: 275 AVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKT 334
Query: 107 RNVIE---------------------------------SPDLASWNAIIAGVASPSNANE 133
+N++ P++ SW+A+I G AS E
Sbjct: 335 KNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEE 394
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCAC 160
A+ LF M+ ++ + +T+ S+L C
Sbjct: 395 ALELFRRMQLAKVKANSVTIASVLSVC 421
Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+ CS L +++H I+ + S L ++++Y G + DA+ V + P
Sbjct: 40 LLQQCSKS---HLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSP--- 93
Query: 109 VIES-PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
IE +L WN+I+ + EA+ ++ MR + DG T ++ AC
Sbjct: 94 -IECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRAC 145
>gi|449435742|ref|XP_004135653.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18970-like [Cucumis sativus]
gi|449522917|ref|XP_004168472.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18970-like [Cucumis sativus]
Length = 318
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 11/146 (7%)
Query: 20 QNLYNEALVAF-DFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
Q +AL F L +TNF ++P+ T C++S S L L+ G VH +I + P
Sbjct: 25 QKYARDALELFRGMLVESTNFEVKPTDTTMVCILSAASQLGMLETGSCVHAYIKKTVDSP 84
Query: 77 --DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
DV + ++NMY KCG L A V +M Q+NV+ +W ++ G+A EA
Sbjct: 85 EKDVFIGTGLVNMYSKCGLLNSASSVFKQMKQKNVL------TWTSMATGLAVHGRGKEA 138
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCAC 160
+ L M + P+ +T SLL AC
Sbjct: 139 LELLDAMGAHGVKPNAVTFTSLLSAC 164
>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Glycine max]
Length = 579
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 9/148 (6%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLI--STCSSLRSLQLGRKVHDHILSSKSQPDV 78
N +AL FD +Q ++ ++ P CL+ C+ L +L+ G ++H +I+ + +
Sbjct: 184 NRTRDALSLFDVMQGSS-YKCEPDDVTCLLLLQACAHLNALEFGERIHGYIMERGYRDAL 242
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
L N +++MY +CG L+ A V M +NV+ SW+A+I+G+A EA+ F
Sbjct: 243 NLCNSLISMYSRCGCLDKAYEVFKGMGNKNVV------SWSAMISGLAMNGYGREAIEAF 296
Query: 139 SEMRDRELIPDGLTVRSLLCACTSPSNV 166
EM ++PD T +L AC+ V
Sbjct: 297 EEMLRIGVLPDDQTFTGVLSACSYSGMV 324
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
+ +C L G +VH +I Q D +L ++++Y C DA V DEMP R
Sbjct: 111 VKSCIRFLYLPGGVQVHCNIFKDGHQWDTLLLTAVMDLYSLCQRGGDACKVFDEMPHR-- 168
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR--ELIPDGLTVRSLLCACT 161
D +WN +I+ + +A+SLF M+ + PD +T LL AC
Sbjct: 169 ----DTVAWNVMISCCIRNNRTRDALSLFDVMQGSSYKCEPDDVTCLLLLQACA 218
>gi|302774170|ref|XP_002970502.1| hypothetical protein SELMODRAFT_93612 [Selaginella moellendorffii]
gi|300162018|gb|EFJ28632.1| hypothetical protein SELMODRAFT_93612 [Selaginella moellendorffii]
Length = 825
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 8/138 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV-LQNY 83
E L F+Q + P+T+A +S CS+L L+ G+++H ++ + + + N
Sbjct: 589 EGLQHLRFMQQQ-GLDMSPATFASTLSACSNLADLREGKRIHSYVRERRFDTEAATVTNS 647
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++ MYGKCGSL+ AR V + ++++I WNAII+G A +A+ LF M+
Sbjct: 648 LVTMYGKCGSLDCAREVFETSRRQDII------CWNAIISGYAQHGQTRDAVELFHRMQQ 701
Query: 144 RELIPDGLTVRSLLCACT 161
+ PD +T +L C+
Sbjct: 702 EGVTPDPVTFVCILSVCS 719
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Query: 41 IRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
++P C L++ C+ L+LGRKVH I + + D++L N +LNMYG+CG +E A
Sbjct: 399 VKPDNVTCVGLLNVCTGSADLKLGRKVHGWIAEGRCEADLILWNSLLNMYGRCGEVEQAE 458
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+V D + QRNVI SW A++ + + + A+ LF + + P +T L
Sbjct: 459 MVFDGILQRNVI------SWTAMLTAYSRQNRQDMALLLFHAIHLSGVKPTCITFLEALD 512
Query: 159 ACTSP 163
AC
Sbjct: 513 ACVGA 517
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 67/114 (58%), Gaps = 7/114 (6%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
+++C + ++L G+ +H I S Q D++L+N +++MYG CGS++DA+ V D MP RNV
Sbjct: 108 LTSCETSQALPAGKLIHGLIAQSGHQCDLILENALVSMYGSCGSVDDAKRVFDAMPARNV 167
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
I +W A+I G + ++ +A +F M + +T +L+ AC+ P
Sbjct: 168 I------TWTAMI-GAHAETSLEQAFKVFRLMELEGFKSNFVTYVTLVQACSKP 214
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
F+ TY L+ CS L++G +H + S S + L N ++ MYG+CG LEDA
Sbjct: 196 GFKSNFVTYVTLVQACSKPEFLEVGIILHMRSVESSSAMETPLCNALITMYGRCGRLEDA 255
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R + M +R++I +WNA+I + EA+ L+ M PD +T +LL
Sbjct: 256 RAIFSSMVERDII------AWNALITEYGQHGHVEEAVLLYQLMLQEGCKPDKVTFVALL 309
Query: 158 CACTSP 163
P
Sbjct: 310 TMSNGP 315
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L++ + +L + VH HI+ S ++ L ++ MY KC SLED R + ++M
Sbjct: 304 TFVALLTMSNGPEALTDVKLVHSHIVESGVSINIALGTALVAMYSKCESLEDTRWLFEKM 363
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
PQRNVI SWN ++ A +A+ + M+ + PD +T LL CT +
Sbjct: 364 PQRNVI------SWNVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGSA 417
Query: 165 NV 166
++
Sbjct: 418 DL 419
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y L+ C L++L + R++H I+ + V L N++++ YGKC SL+DA + M
Sbjct: 3 YVRLLQACPKLKALDIARRLHSQIVRASLDNRVFLGNHLIHTYGKCHSLDDAWETFERMS 62
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+NV +W AII A + A+ L +M + PD +T+ + L +C +
Sbjct: 63 YKNVY------TWTAIIGVCAHHHCHSLAIILLRQMLLEGVKPDNITLLAALTSCET 113
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 10/149 (6%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
QN + AL+ F + + ++P+ T+ + C +L GR VH + S + D
Sbjct: 482 QNRQDMALLLFHAIHLSG---VKPTCITFLEALDACVGAEALGKGRLVHSCAVQSGNDTD 538
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V L + ++ MYG+CGS+ DA+ D+ R + +W+A+IA E +
Sbjct: 539 VSLGSALVAMYGRCGSIRDAKACFDDTEVRK-----NHVTWSAMIAAFVQHGQDREGLQH 593
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNV 166
M+ + L T S L AC++ +++
Sbjct: 594 LRFMQQQGLDMSPATFASTLSACSNLADL 622
>gi|302782906|ref|XP_002973226.1| hypothetical protein SELMODRAFT_442088 [Selaginella moellendorffii]
gi|300158979|gb|EFJ25600.1| hypothetical protein SELMODRAFT_442088 [Selaginella moellendorffii]
Length = 282
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 72/120 (60%), Gaps = 7/120 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T+ ++ CSS+RSL+ G+ +H I+ + P L+N ++N Y KC +++ AR + +
Sbjct: 11 ATFCSVLGACSSVRSLRDGQALHSRIVDTGFGPVPALENALVNFYAKCRAMDQARRLFSK 70
Query: 104 MPQRNVIESPDLASWNAIIAGVA-SPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
M +R +LA+WNA+I A S+ NEAM L+ EM + P+ T+ S+L AC+S
Sbjct: 71 MAKR------ELATWNAMILSFAEEESSKNEAMHLYHEMNLHGVEPNKFTLTSVLGACSS 124
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG--SLEDAR 98
+ P+ + L S + SL G+ +H I +S D + +L MY G +LE A+
Sbjct: 108 VEPNKFT-LTSVLGACSSLDQGKALHQRITASGVDSDPTVATCLLTMYVTLGDENLELAK 166
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
D++P + V SW +IA +EA+ LF +M ++ PD + ++L
Sbjct: 167 NFFDKLPAKEVF------SWTVMIAACIERGFTDEALQLFRKM---DVPPDNVVFTTVLG 217
Query: 159 ACTS 162
AC+S
Sbjct: 218 ACSS 221
>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 708
Score = 79.3 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 72/140 (51%), Gaps = 7/140 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+LY E LV F+ ++ N+ TY L+ C+ LR+L G+ H ++ S + L
Sbjct: 233 DLYEEGLVLFNRMRENSVLG-NEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCL 291
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+L+MY KCG + +AR V +E DL W A+I G + NEA+SLF +
Sbjct: 292 VTSLLDMYVKCGDISNARRVFNEHSH------VDLVMWTAMIVGYTHNGSVNEALSLFQK 345
Query: 141 MRDRELIPDGLTVRSLLCAC 160
M + P+ +T+ S+L C
Sbjct: 346 MSGVGIKPNCVTIASVLSGC 365
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 78/142 (54%), Gaps = 14/142 (9%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQP-DVVL 80
NEAL F Q + I+P+ T A ++S C + +L+LGR +H LS K D +
Sbjct: 337 NEALSLF---QKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHG--LSIKVGIWDTNV 391
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MY KC DA+ V + ++ D+ +WN+II+G + + +EA+ LF
Sbjct: 392 ANALVHMYAKCYQNRDAKYVFEMESEK------DIVAWNSIISGFSQNGSIHEALFLFHR 445
Query: 141 MRDRELIPDGLTVRSLLCACTS 162
M ++P+G+TV SL AC S
Sbjct: 446 MNTESVMPNGVTVASLFSACAS 467
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 19/145 (13%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDH-----ILSSKSQP 76
+EAL F F + NT + P+ T A L S C+SL SL +G +H + L+S S
Sbjct: 437 HEAL--FLFHRMNTE-SVMPNGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLASSS-- 491
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
V + +L+ Y KCG E AR++ D + ++N I +W+A+I G + ++
Sbjct: 492 -VHVGTALLDFYAKCGDAESARLIFDTIEEKNTI------TWSAMIGGYGKQGDTKGSLE 544
Query: 137 LFSEMRDRELIPDGLTVRSLLCACT 161
LF EM ++ P+ T S+L AC+
Sbjct: 545 LFEEMLKKQQKPNESTFTSVLSACS 569
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 7/112 (6%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
+ C+ ++ L G+K+H I+ S +VVL +L+MY KCG ++ + V +++ RNV
Sbjct: 161 LKACTEVQDLDNGKKIHCQIVKVPSFDNVVLTG-LLDMYAKCGEIKSSYKVFEDITLRNV 219
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ W ++IAG E + LF+ MR+ ++ + T +L+ ACT
Sbjct: 220 V------CWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACT 265
Score = 42.7 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+S C+++ SL R+ H + + D+ + ++++YG G +DAR+V D++P+
Sbjct: 62 LLSKCTNIDSL---RQAHGVLTGNGLMGDISIATKLVSLYGSFGYTKDARLVFDQIPE-- 116
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
PD W I+ + + E + + + D + L ACT
Sbjct: 117 ----PDFYLWKVILRCYCLNNESFEVIKFYDLLMKHGFGYDDIVFSKALKACT 165
>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
Length = 855
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 77/145 (53%), Gaps = 8/145 (5%)
Query: 24 NEALVAF-DFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV-LQ 81
N+AL F + T+ + T +C + C+ L L+LGR++H + L ++++ +V+ +
Sbjct: 462 NDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVG 521
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N +++MY K G ++ AR V D M RNV+ SW +++ G EA+ LF +M
Sbjct: 522 NCLIDMYSKSGDIDAARAVFDNMKLRNVV------SWTSLMTGYGMHGRGEEALHLFDQM 575
Query: 142 RDRELIPDGLTVRSLLCACTSPSNV 166
+ DG+T +L AC+ V
Sbjct: 576 QKLGFAVDGITFLVVLYACSHSGMV 600
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 32/172 (18%)
Query: 28 VAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
+AF + N+ + ++RP T ++ C+S+ +LQ G++VH + + DV + N ++
Sbjct: 218 IAFR-MGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALV 276
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIE-----------------------------SPDLA 116
+MY KC + +A V + + +++V+ D+
Sbjct: 277 SMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVI 336
Query: 117 SWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
+W+A+IAG A + EA+ +F +M+ L P+ +T+ SLL C S +LY
Sbjct: 337 TWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLY 388
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 6/121 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C + SL+ G VH + ++ +V + N I+ MYG+CG+L+DA + DE+
Sbjct: 129 TFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEV 188
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR---ELIPDGLTVRSLLCACT 161
+R + D+ SWN+I+A + A+ + M + +L PD +T+ ++L AC
Sbjct: 189 LERKI---EDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACA 245
Query: 162 S 162
S
Sbjct: 246 S 246
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 15/149 (10%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSS-------KS 74
A D + + + P+ T A L+S C+S+ +L G++ H +++ +
Sbjct: 349 GHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDK 408
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+ D+++ N +++MY KC S AR + D + ++ ++ +W +I G A AN+A
Sbjct: 409 EDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKD----KNVVTWTVMIGGYAQHGEANDA 464
Query: 135 MSLFSEMRDRE--LIPDGLTVRSLLCACT 161
+ LF+++ ++ L P+ T+ L AC
Sbjct: 465 LKLFAQIFKQKTSLKPNAFTLSCALMACA 493
>gi|302819906|ref|XP_002991622.1| hypothetical protein SELMODRAFT_451234 [Selaginella moellendorffii]
gi|300140655|gb|EFJ07376.1| hypothetical protein SELMODRAFT_451234 [Selaginella moellendorffii]
Length = 459
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A ++S SS L GR VH I+S + D V+ ++NMY +CG + AR D +
Sbjct: 141 TFASILSAVSSPGLLPEGRTVHRQIISRGFEGDTVVGTALVNMYARCGDVVTARTNFDNL 200
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP--DGLTVRSLLCACTS 162
+N++ SWNA+IAG ++ EA+ L+ +M+ E P DGLT S+L AC++
Sbjct: 201 CSKNIV------SWNAMIAGYVQAGSSQEALLLYEKMQQDEAKPKADGLTFASVLAACSN 254
Query: 163 PSNV 166
+
Sbjct: 255 LGEI 258
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 14/152 (9%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSS 72
+Q + + EAL F + +++P T+A ++ C+SL +L+ GR++H + +
Sbjct: 14 GAQVLHEQFREALSLFK------SMKMKPDAITFATALTACASLEALEEGREIHRKTVEA 67
Query: 73 KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNAN 132
+ +++N ++ MY +CGSLEDA+ V R+V+ SW+A+IA A
Sbjct: 68 GLESVTMVRNALVTMYARCGSLEDAQGVFTGTVDRDVV------SWSALIAAHAQHGQDL 121
Query: 133 EAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
EA+ ++ M + D T S+L A +SP
Sbjct: 122 EAIKVYRRMNLEGIEADVFTFASILSAVSSPG 153
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 80/142 (56%), Gaps = 13/142 (9%)
Query: 24 NEALVAFDFLQNNTNFRIRPS----TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
EAL+ ++ +Q + +P T+A +++ CS+L + GR++H + +S D++
Sbjct: 222 QEALLLYEKMQQD---EAKPKADGLTFASVLAACSNLGEISRGRELHYDVAASGFAEDLI 278
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+QN +++MYGKCG+L ++R V + + R+VI SW +++ A + EA+ L
Sbjct: 279 VQNALVDMYGKCGNLVESRNVFEGIKSRSVI------SWTSMVTAYARHGHGAEAVELVW 332
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
M + D +T+ S+L AC+
Sbjct: 333 RMSLEGVEADDVTLTSILQACS 354
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 114 DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
D+ SWNA++ EA+SLF M+ + PD +T + L AC S
Sbjct: 5 DIVSWNAVLGAQVLHEQFREALSLFKSMK---MKPDAITFATALTACAS 50
>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
Length = 539
Score = 79.3 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 78/141 (55%), Gaps = 10/141 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSK-SQPDVVL 80
N+AL F ++ ++P+ T +C + C+ L +L+LGR++H +IL + + +
Sbjct: 146 NDALELFSWMFKQDGL-VKPNCFTISCALIACARLAALRLGRQIHAYILRNHFDSAFLYV 204
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MY K G ++ AR V D + Q+N + SW +++ G EA+ +F E
Sbjct: 205 ANCLIDMYAKSGDIDVARFVFDNLKQKNFV------SWTSLMTGYGMHGRGKEALEVFDE 258
Query: 141 MRDRELIPDGLTVRSLLCACT 161
MR L PDG+T+ +L AC+
Sbjct: 259 MRRVGLQPDGVTLLVVLYACS 279
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 60/108 (55%), Gaps = 8/108 (7%)
Query: 41 IRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP + + + C+S+ + G+ VH + S S D+ + N +++MY KCG +++A
Sbjct: 9 MRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEAS 68
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
V D + +++V+ SWNA++ G + +A+ LF +MR+ +
Sbjct: 69 KVFDRIKEKDVV------SWNAMVNGYSQIGRFEDALGLFEKMREENI 110
>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
Length = 781
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 80/142 (56%), Gaps = 7/142 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F +Q R +T ++ TC+ L +LQ GR++H HI+ ++ + ++V++ +
Sbjct: 391 EALQLFQEMQLEGR-RPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETAL 449
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+NMYGKCG + +A V ++M +R D+ WN+++ A +E + LF++M+
Sbjct: 450 INMYGKCGKMAEAMSVFEKMAKR------DILVWNSMLGAYAQHGYYDETLQLFNQMQLD 503
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
+ D ++ S+L A + +V
Sbjct: 504 GVKADAVSFVSVLSALSHSGSV 525
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 71/127 (55%), Gaps = 8/127 (6%)
Query: 42 RPST--YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
+P T + L+ CSS +++ GR+VH H+ + + ++ +++ MY +CGS+ +A+
Sbjct: 1 KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V + ++E D+ +W +I + + A+ +F +M++ +++P +T ++L A
Sbjct: 61 VFE------ILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNA 114
Query: 160 CTSPSNV 166
C S ++
Sbjct: 115 CASTESL 121
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 11/147 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
Q Y+ AL F +Q + P+ TY +++ C+S SL+ G ++H IL + D
Sbjct: 83 QGDYDRALGMFYQMQEED---VMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGD 139
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + ++NMY KCGS+ A + R+V+ SW A+IA A L
Sbjct: 140 VFVGTALINMYNKCGSVRGAWDSFKRLEHRDVV------SWTAMIAACVQHDQFALARWL 193
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPS 164
+ M+ ++P+ +T+ ++ A P+
Sbjct: 194 YRRMQLDGVVPNKITLYTVFNAYGDPN 220
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ EA+ F LQ + + T+ +++ +SL SL G+ +H+ + + D V+
Sbjct: 288 FGEAVRLFGRLQQD-GVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVAT 346
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++++YG+C + A + +M ++VI +W + A EA+ LF EM+
Sbjct: 347 ALMSLYGRCEAPGQAWKIFVDMGSKDVI------TWTVMCVAYAQNGFRKEALQLFQEMQ 400
Query: 143 DRELIPDGLTVRSLLCAC 160
P T+ ++L C
Sbjct: 401 LEGRRPTSATLVAVLDTC 418
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118
L G+ V+ + S + DV + N +NM+G G L DAR + ++M R+V+ +W
Sbjct: 222 LSEGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVV------TW 275
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
N +I N EA+ LF ++ + + +T +L TS
Sbjct: 276 NIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTS 319
>gi|296084954|emb|CBI28363.3| unnamed protein product [Vitis vinifera]
Length = 930
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 9/141 (6%)
Query: 24 NEALVAF-DFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+E L+ F D L + +RP ++ A ++ C + L GR VH ++ S D +
Sbjct: 99 SEVLMMFWDMLCGSGGGLLRPDSFVFAVVLRACGMVECLSYGRGVHGLVVKQSSVVDSFV 158
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+N +++MYG CG+LEDA VV I+ PDL W++I++G E + +F +
Sbjct: 159 ENALVSMYGSCGALEDAAVVF------GGIDKPDLVGWSSILSGYVKNGLEEEGLRIFCD 212
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M + PD +L ACT
Sbjct: 213 MVSGGIEPDAFAFSMVLGACT 233
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 47 AC-LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
AC + ++CSS L +G + H ++ + N ++ MY CG ++A + MP
Sbjct: 567 ACDIFASCSSPVLLNVGTQAHAYMTKRGLISHPTISNSLIQMYSACGKFDEAVQAFNLMP 626
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++ D SW +I++ + +EA++L S+MR + D T RS+L AC
Sbjct: 627 EK------DTCSWTSILSARVEHGHPSEALNLISQMRWKNKPADQSTFRSVLNACA 676
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 41 IRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I P +A ++ C++L G + H +I+ + L+N +++ Y KCG LE R
Sbjct: 218 IEPDAFAFSMVLGACTNLECWDFGTQAHCYIIKMGFDSCLYLENSLMDFYAKCGDLEGMR 277
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V M ++N++ SWN I G + EA+ +F + + D ++ S+L
Sbjct: 278 RVFSHMSEKNLV------SWNTFINGYVHNFHYLEALRIFQILMEEVSQCDDFSLLSILK 331
Query: 159 ACTSPSNV 166
A + ++
Sbjct: 332 AVSGLGHL 339
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP--------DVVLQNYILNMYGKCGSL 94
P+T L + +L S L + +HI +K +P L N L MY G++
Sbjct: 8 PTTPFLLPPSLHNLHSQTLLQLQSNHIAQTKLKPIPQNEIHARTRLFNLYLRMYVNAGAM 67
Query: 95 EDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM----RDRELIPDG 150
++AR + DEMP+R+++ SW +++G A A+E + +F +M L PD
Sbjct: 68 QEARKLFDEMPERSLV------SWTIVMSGYARHGPASEVLMMFWDMLCGSGGGLLRPDS 121
Query: 151 LTVRSLLCAC 160
+L AC
Sbjct: 122 FVFAVVLRAC 131
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 35/189 (18%)
Query: 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILS 71
TF N Y EAL F L + + + ++ S L L G+++H +IL
Sbjct: 293 TFINGYVHNFHYLEALRIFQILMEEVS-QCDDFSLLSILKAVSGLGHLDHGKEIHGYILR 351
Query: 72 SKSQPDVVLQNYILNMYGKC---------------------GSLEDARVVSD-------- 102
+ + + + + +L+MY C G D +++
Sbjct: 352 AGIETNRYVVSSLLDMYIGCIDHESLYPRVEVPLKLLNYLEGGGYDEFIMTSLLKWCSLE 411
Query: 103 ---EMPQR--NVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
E +R +E PD A W+A+I+G + EA+ LF +M+ + + T S++
Sbjct: 412 SSLETAKRVFTRVEQPDTAPWSALISGHSWNGCFAEALKLFRKMQFDGIKANEFTFTSVI 471
Query: 158 CACTSPSNV 166
AC + N+
Sbjct: 472 LACLALENL 480
>gi|297740128|emb|CBI30310.3| unnamed protein product [Vitis vinifera]
Length = 543
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P T ++S+C+ L + GR+V I S + L+N ++NMY +CG+L AR + D
Sbjct: 260 PVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFD 319
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
M ++NVI SW AIIAG A+ LF EM + +PDG S+L AC+
Sbjct: 320 GMTEKNVI------SWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACS 372
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 23/165 (13%)
Query: 2 IRNLKTQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSL 59
+R L Q F Q NLY + L + D P+ T+ +C+SL
Sbjct: 28 LRELARQRHF-----QEALNLYCQMLASGD----------SPNAFTFPFAFKSCASLSLP 72
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLA-SW 118
G ++H H++ + +P+ +Q +++MY KC ++ AR V DE S +LA +
Sbjct: 73 LAGSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHH-----SRNLAVCY 127
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
NA+IAG + S ++A+ LF +MR + + +T+ L+ C P
Sbjct: 128 NALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGP 172
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
LI C+ L G +H + D+ + N +L MY +CGS++ AR + D MP++
Sbjct: 165 LIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKG 224
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+I +WNA+I+G A A + L+ +M ++PD +T+ +L +C
Sbjct: 225 LI------TWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSC 270
>gi|255566945|ref|XP_002524455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536243|gb|EEF37895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 80/142 (56%), Gaps = 14/142 (9%)
Query: 23 YNEALVAF-DFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHI-LSSKSQPDV 78
Y EAL F LQ+N + P+ T ++ C++L +L LG+ +H +I + K+ +
Sbjct: 338 YKEALGLFRQMLQSN----VEPNDVTLLSILPACANLGALGLGKWIHAYIDKNMKNLANN 393
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
L +++MY KCG++E A + D M ++ LASWNA+I+G A A+ A+SLF
Sbjct: 394 ALWTSLIDMYAKCGNIEVANQIFDGMNPKS------LASWNAMISGFAMHGQADLAISLF 447
Query: 139 SEMRDRELIPDGLTVRSLLCAC 160
S M L+PD +T +L AC
Sbjct: 448 SRMTKEGLVPDNITFIGVLSAC 469
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ EAL+ F+ + N ST ++S C+ SL++G V I + ++ + N
Sbjct: 237 FEEALIFFEEMLR-ANVTPNMSTLLSVLSACAQSGSLKMGNWVSSWIEEHGLESNIKVMN 295
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG LE+A + + + +NVI SWN +I G S EA+ LF +M
Sbjct: 296 ALIDMYAKCGDLENALHLFEGIKNKNVI------SWNVMIGGYTHLSCYKEALGLFRQML 349
Query: 143 DRELIPDGLTVRSLLCAC 160
+ P+ +T+ S+L AC
Sbjct: 350 QSNVEPNDVTLLSILPAC 367
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 25/149 (16%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
+ F TY ++ +C+ + S G+++H IL D + ++ MY + G L +
Sbjct: 118 SGFTPNTYTYPFVLKSCARISSTHEGKQIHGQILKLGFDNDAFVHTSLITMYVQNGELGN 177
Query: 97 ARVVSDEMPQRNVI-----------------------ESP--DLASWNAIIAGVASPSNA 131
AR+V + R+V+ E P D+ SWNA+IAG
Sbjct: 178 ARLVFERSSMRDVVSYTALITGYASRGFLDQALELFDEIPVRDVVSWNAMIAGYTQSGRF 237
Query: 132 NEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
EA+ F EM + P+ T+ S+L AC
Sbjct: 238 EEALIFFEEMLRANVTPNMSTLLSVLSAC 266
>gi|356561520|ref|XP_003549029.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Glycine max]
Length = 506
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
Q +NE V F F ST+ C+I +++ SL +G+ H + + D
Sbjct: 190 QTGHNEEAVNFFIGMLREGFIPNESTFPCVICAAANIASLGIGKSFHACAIKFLGKVDQF 249
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ N +++ Y KCGS+ED+ ++ D++ +RN++ SWNA+I G A EA+S F
Sbjct: 250 VGNSLISFYAKCGSMEDSLLMFDKLFKRNIV------SWNAMICGYAQNGRGAEAISFFE 303
Query: 140 EMRDRELIPDGLTVRSLLCAC 160
M P+ +T+ LL AC
Sbjct: 304 RMCSEGYKPNYVTLLGLLWAC 324
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 39/153 (25%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHD---------HILSSKS-------------- 74
+IRP+ T+ LI++ ++L ++ +G+++H H+ S
Sbjct: 76 KIRPNEFTFGTLINSSAALGNVVVGKQLHACAMKIGLSCHVFVGSSLLDLYFKQSTIEDA 135
Query: 75 --------QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVA 126
P+VV ++ Y K G EDA V EMP+RNV+ SWNA++ G +
Sbjct: 136 QKAFGDTQHPNVVSYTTLICGYLKRGRFEDALRVFHEMPERNVV------SWNAMVGGCS 189
Query: 127 SPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ EA++ F M IP+ T ++CA
Sbjct: 190 QTGHNEEAVNFFIGMLREGFIPNESTFPCVICA 222
>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
Length = 562
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 10/146 (6%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQN 82
EAL+ F ++N+ T+ + + C + L+ GR++H ++S + +L+N
Sbjct: 69 EALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSNAILEN 128
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+LNMY +CGSLE+AR V D M + PD SW ++I EA+ LF M
Sbjct: 129 ALLNMYVRCGSLEEARKVFDTM------DHPDAFSWTSMITACTENCELLEALELFHRMN 182
Query: 143 DRELIPDGLTVRSLL--CACTSPSNV 166
+ P +T+ S+L CAC+ V
Sbjct: 183 LEGIPPTSVTLASVLNACACSGALKV 208
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A +++ C+ +L++G+++H + +S V+ Q +L+MY KCGSLE + V M
Sbjct: 192 TLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAM 251
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
RN + SW A+IA +A +EA+ LF EM ++ D T +L AC+
Sbjct: 252 ETRNSV------SWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACS 302
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118
++ GR++H + + QN +++MY KCG L++AR + + + +R V+ SW
Sbjct: 1 MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVV------SW 54
Query: 119 NAIIAGVASPSNANEAMSLFSEMR-DRELIPDGLTVRSLLCAC 160
+A+I A EA+ LF MR D + P+ +T + AC
Sbjct: 55 SAMIGAYALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNAC 97
>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Glycine max]
Length = 824
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L +EA+ A++ ++ T+ ++ S + +LQ G K+H ++ + DV +
Sbjct: 430 GLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFV 489
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+++MYGKCG LEDA + E+PQ + WNAII+ + + +A+ LF +
Sbjct: 490 ATCLIDMYGKCGRLEDAMSLFYEIPQETSV------PWNAIISSLGIHGHGEKALQLFKD 543
Query: 141 MRDRELIPDGLTVRSLLCACT 161
MR + D +T SLL AC+
Sbjct: 544 MRADGVKADHITFVSLLSACS 564
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 10/140 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVL 80
++ + A F + +RP T L S L ++GR VH ++ + + D+V+
Sbjct: 328 DDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVI 387
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N ++NMY K GS++ AR V +++P R+VI SWN +I G A A+EA+ ++
Sbjct: 388 GNALVNMYAKLGSIDCARAVFEQLPSRDVI------SWNTLITGYAQNGLASEAIDAYNM 441
Query: 141 MRD-RELIPDGLTVRSLLCA 159
M + R ++P+ T S+L A
Sbjct: 442 MEEGRTIVPNQGTWVSILPA 461
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL D ++ ++ T + ++ C+ + G VH +++ + DV + N +
Sbjct: 231 EALRVLDRMKTE-EVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNAL 289
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+NMY K G L+DA+ V D M R DL SWN+IIA + A+ F EM
Sbjct: 290 INMYSKFGRLQDAQRVFDGMEVR------DLVSWNSIIAAYEQNDDPVTALGFFKEMLFV 343
Query: 145 ELIPDGLTVRSL 156
+ PD LTV SL
Sbjct: 344 GMRPDLLTVVSL 355
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 11/129 (8%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP T+ ++ C SL G K+H +L + DV + ++++Y + G++E A
Sbjct: 146 VRPDFYTFPPVLKACLSLAD---GEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAH 202
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V +MP R D+ SWNA+I+G N EA+ + M+ E+ D +TV S+L
Sbjct: 203 KVFVDMPVR------DVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLP 256
Query: 159 ACTSPSNVL 167
C ++V+
Sbjct: 257 ICAQSNDVV 265
>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
chloroplastic [Vitis vinifera]
gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
Length = 893
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
Query: 29 AFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY 88
A + Q +RP + C S S + SL LGR +H +IL D+ + + + MY
Sbjct: 435 AVELFQRMLQEGLRPDKF-CSSSVLSIIDSLSLGRLIHCYILKIGLFTDISVGSSLFTMY 493
Query: 89 GKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP 148
KCGSLE++ V ++MP + D SW ++I G + +A +A+ LF EM E+ P
Sbjct: 494 SKCGSLEESYTVFEQMPDK------DNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRP 547
Query: 149 DGLTVRSLLCACTS 162
D +T+ + L AC++
Sbjct: 548 DQMTLTAALTACSA 561
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 70/122 (57%), Gaps = 8/122 (6%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
IRP T ++ CS+L SL+ G++VH + L ++ +V++ ++NMY KCG++ A
Sbjct: 544 EIRPDQMTLTAALTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLA 603
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R V D +PQ+ D S +++++G A +A+ LF E+R +L D TV S++
Sbjct: 604 RRVFDMLPQK------DQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVI 657
Query: 158 CA 159
A
Sbjct: 658 GA 659
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 8/141 (5%)
Query: 25 EALVAFD-FLQNNTNFRIRPS-TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
E VA D F Q F + S T++ +++ C++L L+ GR V ++ + DV +
Sbjct: 228 ENWVALDLFCQMCCRFFMPNSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGT 287
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
I+++Y KC ++ A MP RNV+ SW II+G ++ A F EMR
Sbjct: 288 AIIDLYAKCRDMDQAVKEFLRMPIRNVV------SWTTIISGFVQKDDSISAFHFFKEMR 341
Query: 143 DRELIPDGLTVRSLLCACTSP 163
+ T+ S+L ACT P
Sbjct: 342 KVGEKINNYTITSVLTACTEP 362
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 8/143 (5%)
Query: 20 QNLYNE-ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
QN Y E AL+ F ++ + I T + +I + L SL +G ++H + +V
Sbjct: 627 QNGYIEDALLLFHEIRM-ADLWIDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEV 685
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ + ++ MY KCGS+++ V ++ IE PDL SW A+I A EA+ ++
Sbjct: 686 SVGSSLVTMYSKCGSIDECHKVFEQ------IEKPDLISWTAMIVSYAQHGKGAEALKVY 739
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
MR PD +T +L AC+
Sbjct: 740 DLMRKEGTKPDSVTFVGVLSACS 762
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY ++S C++L S G V+ L + + ++ +++++ K S EDA V ++
Sbjct: 149 TYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCSFEDALRVFQDV 208
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
NV+ WNAII+G A+ LF +M R +P+ T S+L AC +
Sbjct: 209 LCENVV------CWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTACAA 260
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 63 RKVHDHILSSKS-QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
+ +H H L + Q + + N ++ Y K S+ A + D+ P NVI SWN +
Sbjct: 65 KILHAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVI------SWNIL 118
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
I+G + ++ F +MR P+ T S+L ACT+ + LY
Sbjct: 119 ISGCNQNFSFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLY 165
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 24 NEALVAFDFLQN--NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
++++ AF F + +I T +++ C+ ++ ++H I + D +
Sbjct: 328 DDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVS 387
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+ ++NMY K G ++ + V EM + +LA W +I+ A + A+ LF M
Sbjct: 388 SALINMYSKIGVVDLSERVFREMES-----TKNLAMWAVMISAFAQSGSTGRAVELFQRM 442
Query: 142 RDRELIPDGLTVRSLL 157
L PD S+L
Sbjct: 443 LQEGLRPDKFCSSSVL 458
>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
Length = 1280
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 4/116 (3%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY LI C+ L +L+ G +H + V +QN ++++YG CG E A V DEM
Sbjct: 806 TYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEM 865
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P R +L SWN+++ A+ NE +++F EM + PDG T+ S+L AC
Sbjct: 866 PVR----GRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTAC 917
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T +++ C+ +L LGR+VH ++ + + N ++++Y KCGS+ DAR + +EM
Sbjct: 909 TIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEM 968
Query: 105 P-QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R V+ SW ++I G+A+ EA+ LFS M +L+P +T+ +L AC+
Sbjct: 969 GLGRTVV------SWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACS 1020
>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
Length = 624
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P Y I+ C+ ++L RK+H H+ SS+ + D L N ++++Y KCGS+ +A V D
Sbjct: 51 PRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFD 110
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+M ++ D+ SW ++IAG A EA+ L M P+G T SLL A
Sbjct: 111 KMRKK------DMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKA 161
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 7/136 (5%)
Query: 26 ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
AL+ F +Q N F TY+ + S + + +L+ G+ VH H++ S+ + + N +L
Sbjct: 237 ALMVFAEMQRN-GFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTML 295
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+MY K GS+ DAR V + + + DL +WN+++ A EA+S F EMR
Sbjct: 296 DMYAKSGSMIDARKVFERVLNK------DLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSG 349
Query: 146 LIPDGLTVRSLLCACT 161
+ + +T +L AC+
Sbjct: 350 IYLNQITFLCILTACS 365
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 8/105 (7%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
R +P+ T+A L+ + +G ++H + DV + + +L+MY +CG ++ A
Sbjct: 147 RFKPNGFTFASLLKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMA 206
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
V D++ +N + SWNA+I+G A + A+ +F+EM+
Sbjct: 207 TAVFDKLDSKNGV------SWNALISGFARKGDGETALMVFAEMQ 245
Score = 36.2 bits (82), Expect = 5.0, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ C+++ CS ++ G+ D I +P++ ++++ G+ G L A V +M
Sbjct: 356 TFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKM 415
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNA 131
P P A W A++A NA
Sbjct: 416 PME-----PTAAVWGALLAACRMHKNA 437
>gi|326515404|dbj|BAK03615.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 10/135 (7%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
R +++ L CS+ + L+ RKVHD++L S + D+ + N L MYG+CG++ AR
Sbjct: 197 RADAASFYELAGACSTPKLLEELRKVHDYLLRSPFRADLQVNNRFLEMYGRCGNMTHARR 256
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
D MP R D+ASW+ +I G A+ + + LF EM+ + P T +L A
Sbjct: 257 TFDHMPDR------DMASWHLMIEGYAANGLGDAGLQLFEEMKRCGMAPTARTFVLVLDA 310
Query: 160 CTSPSNV----LYLD 170
C + + LY D
Sbjct: 311 CANSEAIEEAFLYFD 325
>gi|302795364|ref|XP_002979445.1| hypothetical protein SELMODRAFT_110780 [Selaginella moellendorffii]
gi|300152693|gb|EFJ19334.1| hypothetical protein SELMODRAFT_110780 [Selaginella moellendorffii]
Length = 637
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C L +L+ GR +H I++S + DVVLQN I+NM+G+CGS+E++ EM
Sbjct: 267 TFMSVVDACGKLSALREGRVLHSSIMNSALKWDVVLQNGIVNMFGRCGSVEESSSAFQEM 326
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
QR+ + SW+ +I+ A + EA+ F M PD LT S+L C
Sbjct: 327 LQRDAV------SWSIMISAFAHNGHGAEALETFLAMNLDGQTPDELTFVSILSVCA 377
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TYA L+ C+S R+L LG+ +H+ I + L N ++ MYG CG ++ A+ D +
Sbjct: 59 TYASLLRQCASARALDLGQLLHEEIARRRFDGYTFLGNTLITMYGSCGDVDRAKKAFDRI 118
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
RN + SWN++IAG A + + EA+ LF M + P+ +T S L
Sbjct: 119 DSRN-----NTVSWNSMIAGYAQNAFSKEALKLFKAMDLQGFQPNKVTFVSAL 166
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Query: 20 QNLYN-EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
QN ++ EAL F + + F+ T+ + +L +L G +H+ +L + D
Sbjct: 136 QNAFSKEALKLFKAM-DLQGFQPNKVTFVSALDAAGNLGALPEGSAIHEEVLEHDCETDT 194
Query: 79 VLQNYILNMYGKC-----GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
+ ++N +GKC G + + D M R D SW+ ++ A +
Sbjct: 195 AVATALINFFGKCPYCQSGDPHQVQAIFDRMRDR------DDVSWSTLVGAYAQSNQHRT 248
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+M LF +M P T S++ AC S
Sbjct: 249 SMELFKKMDVEGYKPTRFTFMSVVDACGKLS 279
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 7/137 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F +Q N T A ++ C L +L LG+ VH ++ + DVVL +
Sbjct: 191 EALKLFREMQAE-NVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTAL 249
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+ MY KCGSL++A V M +R D+ +W+ +IAG A + +A+ LF M+
Sbjct: 250 VGMYSKCGSLDNALKVFQGMAER------DVTAWSTMIAGYAIHGHGEKALQLFDAMKRS 303
Query: 145 ELIPDGLTVRSLLCACT 161
+ IP+ +T S+L AC+
Sbjct: 304 KTIPNCVTFTSVLSACS 320
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C L L G+++H I+ + L N ++ +Y CG ++ A V+ DEM
Sbjct: 109 TFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEM 168
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P+ PD ASW+ +++G A A EA+ LF EM+ + D T+ S++ C
Sbjct: 169 PE------PDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVC 218
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 77/144 (53%), Gaps = 7/144 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+NE+L F +Q+ T +++ C+ L SL++G + +I +K + DVV+ N
Sbjct: 349 FNESLEIFREMQS-AGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGN 407
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG E A+ V +M QR D +W A++ G+A+ EA+ +F +M+
Sbjct: 408 ALIDMYFKCGCSEKAQKVFHDMDQR------DKFTWTAMVVGLANNGQGQEAIKVFFQMQ 461
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
D + PD +T +L AC V
Sbjct: 462 DMSIQPDDITYLGVLSACNHSGMV 485
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 25/142 (17%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S CS ++ L ++VH+++ K++P + L+N ++N Y CG ++ A + M
Sbjct: 238 TLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSM 297
Query: 105 PQRNVI-----------------------ESP--DLASWNAIIAGVASPSNANEAMSLFS 139
R+VI + P D SW +I G NE++ +F
Sbjct: 298 KARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFR 357
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
EM+ +IPD T+ S+L AC
Sbjct: 358 EMQSAGMIPDEFTMVSVLTACA 379
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
+L G+K+H H++ ++ +QN ++ MY CG ++ AR V D + +V S
Sbjct: 150 ALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVF------S 203
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
WN +I+G E++ L EM + P +T+ +L AC+
Sbjct: 204 WNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSK 248
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSS-KSQPDVVLQ 81
EA+ F +Q+ + I+P TY ++S C+ + RK + S + +P +V
Sbjct: 452 EAIKVFFQMQDMS---IQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHY 508
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+++M G+ G +++A + +MP +P+ W A++ AS + +E M+ +
Sbjct: 509 GCMVDMLGRAGLVKEAYEILRKMPM-----NPNSIVWGALLG--ASRLHNDEPMAELAAK 561
Query: 142 RDRELIPDGLTVRSLLC 158
+ EL PD V +LLC
Sbjct: 562 KILELEPDNGAVYALLC 578
>gi|359492597|ref|XP_002282781.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g04860-like [Vitis vinifera]
Length = 724
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A L++ CS + LQ G ++H+++L + + L+ +++MY KCG LE A V
Sbjct: 453 TIASLLAGCSEVGFLQFGERLHNYVLRNNLDMEDFLETALVDMYIKCGRLESAERVFKS- 511
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
I+ P LA+WN +I+G + + A+S +SEM+++ L PD +T +L ACT
Sbjct: 512 -----IKEPCLATWNTMISGYGLSGHEHRALSCYSEMQEQGLKPDRITFLGVLSACTHGG 566
Query: 165 NV 166
V
Sbjct: 567 LV 568
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
G +H + L + D ++ N +++MY K G +E + EM ++ +I SWN++
Sbjct: 369 GLGIHAYGLKTGLCADCLVVNGLISMYSKFGDIETVFSLFSEMGEKQLI------SWNSV 422
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I+ ++AM LF +MR PD +T+ SLL C+
Sbjct: 423 ISACIQVGRTSDAMELFCQMRMYGHSPDAITIASLLAGCS 462
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 14/162 (8%)
Query: 6 KTQLRF-TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRK 64
KT++ + T + L++EA++ F +Q R+ + Y +IS S+ L
Sbjct: 218 KTEVSWNTMIGAYGQNGLFDEAMLVFKQMQKE---RVEVN-YVTIISLLSANAHLD---S 270
Query: 65 VHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124
H +++ + D + ++ Y CG++E A ++ + MPQRN L S A+I+G
Sbjct: 271 THCYVIKTGFATDASVITSLVCSYAGCGNIESAGLLYNLMPQRN------LVSLTAMISG 324
Query: 125 VASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
A N + F++M ++ PD + + S+L T P+ +
Sbjct: 325 YAEKGNMGLVVECFTQMLQLKMKPDAVAMVSILHGFTDPTFI 366
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T L+ +C + G+ +H + S D ++N + +MY KC L+ A V+ +E+
Sbjct: 156 TLVGLVPSCGRPDIIFQGKAIHGFGIKSGLDLDCRVKNALTSMYAKCADLQAAEVLFEEI 215
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
++ + SWN +I +EAM +F +M+ + + +T+ SLL A
Sbjct: 216 FEKTEV------SWNTMIGAYGQNGLFDEAMLVFKQMQKERVEVNYVTIISLLSA 264
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 64 KVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIA 123
++ H+ S V L L+ YGK G + A+ + +EMP+R+V+ SWNA+I
Sbjct: 74 QIQTHLRKSGFNQYVYLTTAFLDFYGKLGCIYYAQHLFEEMPRRDVV------SWNALIC 127
Query: 124 GVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
G + +A+ +F +M P T+ L+ +C P
Sbjct: 128 GYSRNGYDYDALEVFVQMLREGFPPCQRTLVGLVPSCGRP 167
>gi|302783925|ref|XP_002973735.1| hypothetical protein SELMODRAFT_99756 [Selaginella moellendorffii]
gi|300158773|gb|EFJ25395.1| hypothetical protein SELMODRAFT_99756 [Selaginella moellendorffii]
Length = 836
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 69/123 (56%), Gaps = 8/123 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I+P+ TY ++S CSSL ++ GRK+H + + DV +QN +L+MY +CGSL DA
Sbjct: 619 IKPNSVTYTSVLSACSSLGNILEGRKIHSKLEGKAEELDVAVQNSLLSMYARCGSLRDAW 678
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
++ R+V SW ++A A ++ A+ L EM + PD +T +S+L
Sbjct: 679 SCFAKIHNRDVF------SWTGMVAAFAHHGHSARALELVREMELCGVSPDAVTFQSVLH 732
Query: 159 ACT 161
AC+
Sbjct: 733 ACS 735
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA-RVVSDE 103
T+A + CS ++ ++ G KV I + + DVV +LNMY CG LE A RV
Sbjct: 522 TFANALKACSKIKDIETGSKVEAMITTKGFETDVVTDTALLNMYAACGDLEAAKRVFGSR 581
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
+R D+ W A+IA A EA++L+ M E+ P+ +T S+L AC+S
Sbjct: 582 RGERR-----DVVFWTAMIASYAQAGRGEEALALYKTMLSEEIKPNSVTYTSVLSACSSL 636
Query: 164 SNVL 167
N+L
Sbjct: 637 GNIL 640
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 48/135 (35%), Positives = 75/135 (55%), Gaps = 14/135 (10%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
NEA + F+ +++ IRP+ CL + CS L G+KVH +I +S+ + D+ LQ
Sbjct: 106 NEAFLLFERMESEG---IRPNAVTCLHVLGACSYQNELPFGKKVHAYISASEFKWDISLQ 162
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
++NMY KCGS DA+ V D M ++ D+ +WNA +AG AS N ++ L EM
Sbjct: 163 TSLVNMYAKCGSPADAKAVFDSMARK------DIVTWNA-MAG-ASVHNG-QSHKLLREM 213
Query: 142 RDRELIPDGLTVRSL 156
+ + P+ T S+
Sbjct: 214 DLQGVKPNATTYASI 228
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY ++ CS++ L G+KVH I+SS + D+ ++ +L++Y KC SL+ A V + M
Sbjct: 421 TYTNVLIACSAMEDLAQGQKVHSRIVSSGLETDMTMETALLSLYIKCRSLKSACQVFEAM 480
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+++VI WN ++ G EA+ L++ M + + + +T + L AC+
Sbjct: 481 GKKDVI------PWNFMMVGYIDHDCDTEALRLYARMHEAGVEANNVTFANALKACSKIK 534
Query: 165 NV 166
++
Sbjct: 535 DI 536
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 74/140 (52%), Gaps = 9/140 (6%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
++EA+ + +++ T+ T+ +I C+ + G +VH ++S + DV + +
Sbjct: 301 HSEAIEIYRLMESETSVEPNAVTFVGVIGACTGCGDVIRGIQVHGRLVSLGLETDVAVGS 360
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++ MY KCGSLEDA+ D + +R+V+ WN +++ + + + + + M
Sbjct: 361 ALVQMYVKCGSLEDAKKAFDRVEKRDVL------CWNFMLSAYSERGSPQQVIEAYEAM- 413
Query: 143 DRELIPDGLTVRSLLCACTS 162
++ P+ +T ++L AC++
Sbjct: 414 --DVEPNAVTYTNVLIACSA 431
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+TYA + S+L R + +L+S V +QN ++N+Y KCG LE AR V +
Sbjct: 223 TTYASITRGSSTLTGC---RAMEQRLLASGYMSHVPVQNALVNVYAKCGDLEGARKVFNR 279
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCACTS 162
+ +++VI SW+ +I+ +EA+ ++ M + P+ +T ++ ACT
Sbjct: 280 LERKDVI------SWSTMISAYNQSGRHSEAIEIYRLMESETSVEPNAVTFVGVIGACTG 333
Query: 163 PSNVL 167
+V+
Sbjct: 334 CGDVI 338
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+V +N+++ ++GK G+ + +R V D M Q+NV SW+ +I A + NEA
Sbjct: 57 NVYFRNWLIQLHGKFGNTQKSREVFDGMQQKNVY------SWSMMIGAYAQNGHRNEAFL 110
Query: 137 LFSEMRDRELIPDGLTVRSLLCACT 161
LF M + P+ +T +L AC+
Sbjct: 111 LFERMESEGIRPNAVTCLHVLGACS 135
>gi|302807080|ref|XP_002985271.1| hypothetical protein SELMODRAFT_121697 [Selaginella moellendorffii]
gi|300147099|gb|EFJ13765.1| hypothetical protein SELMODRAFT_121697 [Selaginella moellendorffii]
Length = 744
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 5/118 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ +C ++ +L LG ++HD + S + D VLQ +++MYGKCG+ + AR D M
Sbjct: 263 TFVNLLESCVAIAALALGEEIHDRLAESGIELDPVLQTALVDMYGKCGNPDAARRAFDRM 322
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
R+V D+ WNA++A E + +F+ M + + PD +T S+L AC S
Sbjct: 323 --RDV---RDVTVWNALLAAYVLRDQGKETLGIFARMSLQGVAPDAVTFLSILDACAS 375
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 7/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T+ ++ C+SL ++ LG+ +H+ I++ DV+L N I+NMYGKCG ++ AR V +
Sbjct: 60 TFVSVLDACASLGAIALGKSIHERIVADGLLGDDVILGNTIVNMYGKCGEVDLAREVFER 119
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
M +N + +WN +IA + EA +L EM L P+ +T+ S++ AC
Sbjct: 120 MEAKNTV------TWNTMIAACSRHDRYKEAFALLGEMDLDGLRPNKITLVSVIDAC 170
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 11/124 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHIL-------SSKSQPDVVLQNYILNMYGKCGSLEDA 97
T+ ++ C+SL +L LGR H +L + + D+ L ++NMY KCGSL DA
Sbjct: 365 TFLSILDACASLAALGLGRLTHSRMLERGLFDRQAVASADL-LTTSVINMYAKCGSLADA 423
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+ E + + D+ +W+A++A + + EA+ F M+ + PD ++ S +
Sbjct: 424 KA---EFAKARRARASDVVAWSAMVAAYSQFGLSEEALRCFYSMQQEGVKPDSVSFVSAI 480
Query: 158 CACT 161
C+
Sbjct: 481 AGCS 484
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 8/124 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP+ T +I C+ ++S+ GR VH+ + + D + N ++N+YGKCG L AR
Sbjct: 156 LRPNKITLVSVIDACAWMQSISRGRIVHEIVAGEGLESDNAVANALVNLYGKCGKLRAAR 215
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+ IE+ D SW ++A A + A+++ M + D T +LL
Sbjct: 216 HALEG------IETRDKISWTTLLAAYARHGHGKRAIAVIKRMDHEGVKLDSFTFVNLLE 269
Query: 159 ACTS 162
+C +
Sbjct: 270 SCVA 273
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY +CGS+ AR D M RNV+ SW+A+IA A + +A+ LF M +
Sbjct: 1 MYNRCGSVIHARRAFDAMVVRNVV------SWSAMIAAYAQRGHPADALELFVRMDHEGV 54
Query: 147 IPDGLTVRSLLCACTS 162
+ +T S+L AC S
Sbjct: 55 KANAITFVSVLDACAS 70
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 77/144 (53%), Gaps = 7/144 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+NE+L F +Q+ T +++ C+ L SL++G + +I +K + DVV+ N
Sbjct: 349 FNESLEIFREMQS-AGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGN 407
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG E A+ V +M QR D +W A++ G+A+ EA+ +F +M+
Sbjct: 408 ALIDMYFKCGCSEKAQKVFHDMDQR------DKFTWTAMVVGLANNGQGQEAIKVFFQMQ 461
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
D + PD +T +L AC V
Sbjct: 462 DMSIQPDDITYLGVLSACNHSGMV 485
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 25/142 (17%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S CS ++ L ++VH+++ K++P + L+N ++N Y CG ++ A + M
Sbjct: 238 TLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSM 297
Query: 105 PQRNVI-----------------------ESP--DLASWNAIIAGVASPSNANEAMSLFS 139
R+VI + P D SW +I G NE++ +F
Sbjct: 298 KARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFR 357
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
EM+ +IPD T+ S+L AC
Sbjct: 358 EMQSAGMIPDEFTMVSVLTACA 379
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
+L G+K+H H++ ++ +QN ++ MY CG ++ AR V D + +V S
Sbjct: 150 ALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVF------S 203
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
WN +I+G E++ L EM + P +T+ +L AC+
Sbjct: 204 WNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSK 248
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSS-KSQPDVVLQ 81
EA+ F +Q+ + I+P TY ++S C+ + RK + S + +P +V
Sbjct: 452 EAIKVFFQMQDMS---IQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHY 508
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+++M G+ G +++A + +MP +P+ W A++ AS + +E M+ +
Sbjct: 509 GCMVDMLGRAGLVKEAYEILRKMPM-----NPNSIVWGALLG--ASRLHNDEPMAELAAK 561
Query: 142 RDRELIPDGLTVRSLLC 158
+ EL PD V +LLC
Sbjct: 562 KILELEPDNGAVYALLC 578
>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
Group]
gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
Length = 658
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 77/143 (53%), Gaps = 12/143 (8%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
NL NEA F N ++RP+ T AC++ +SL SL+ GR++H + + D
Sbjct: 266 NLANEAFTLF----NEMLLQLRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDN 321
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N +++MY KCG+L AR + D + +N+I SW +IAG +A++LF
Sbjct: 322 FVANALVDMYVKCGALLLARRLFDMLTNKNLI------SWTIMIAGYGMHGRGRDAIALF 375
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
+M+ + PD + ++L AC+
Sbjct: 376 EQMKGSGIQPDAGSFSAILYACS 398
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 9/128 (7%)
Query: 41 IRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
IRP +A + + SL+ G+ VH + + + + + + N ++ MY KCG +E+AR
Sbjct: 182 IRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEAR 241
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+ D + +++ I SWN +I G + + ANEA +LF+EM +L P+ +T+ +L
Sbjct: 242 FIFDHVTKKDTI------SWNTLIGGYSRSNLANEAFTLFNEML-LQLRPNAVTMACILP 294
Query: 159 ACTSPSNV 166
A S S++
Sbjct: 295 AAASLSSL 302
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
G VH +++ + N +++ Y K +EDA +V DEMPQR++I SWN+I
Sbjct: 3 GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDII------SWNSI 56
Query: 122 IAGVASPSNANEAMSLFSEM--RDRELIPDGLTVRSLLCAC 160
I G AS ++A+ LF M +EL D T+ S++ AC
Sbjct: 57 IGGCASNGLYDKAVELFVRMWLEGQEL--DSTTLLSVMPAC 95
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 14/127 (11%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92
L + T + P AC+ S S + + G V ++S S L N +L+MY C
Sbjct: 83 LDSTTLLSVMP---ACVQSHYSFIGGVVHGYSVRTGLISETS-----LGNALLDMYSNCS 134
Query: 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
+ M Q+NV+ SW A+I + ++ LF EM + PD
Sbjct: 135 DWRSTNKIFRNMEQKNVV------SWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFA 188
Query: 153 VRSLLCA 159
+ S L A
Sbjct: 189 ITSALDA 195
>gi|356576967|ref|XP_003556601.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g35030, mitochondrial-like [Glycine max]
Length = 453
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 5/147 (3%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
L EAL F+ + N + T+ ++ CS L L G+++H I + Q D
Sbjct: 152 HGLSEEALKVFNKMLANDGLKPNTGTFVTVLRACSDLAGLTEGQQIHQMISKTVFQ-DSX 210
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ ++NMY KCG L A+ + D+ ++ DL SWN +IAG A EA++LF+
Sbjct: 211 ICGTLINMYPKCGELHTAKXMFDD----GLLSQRDLISWNGMIAGYAHHGYGKEAINLFN 266
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNV 166
EM++ + + +T LL AC+ V
Sbjct: 267 EMQELGVCANDVTFVGLLRACSHTGVV 293
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 25/96 (26%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIE------------------------- 111
DVV ++ K G +EDAR + D MP RNV+
Sbjct: 45 DVVSWTTMVAGLLKNGRVEDARALFDRMPVRNVVSWNAMIMGHAQNRRLHEALELFQGMP 104
Query: 112 SPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
D+ SWN +I G N A LF EMR++ I
Sbjct: 105 ERDMHSWNTMITGFIQNGKLNYAEKLFGEMREKNAI 140
>gi|242033481|ref|XP_002464135.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
gi|241917989|gb|EER91133.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
Length = 576
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 7/137 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EA + F +Q N + +T LI CS L +LQ GR H ++ + + N +
Sbjct: 390 EAFLVFKKMQA-CNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSL 448
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MY KCG ++ +R V D+MP R D+ SWN +IAG EA +LF M+++
Sbjct: 449 IDMYAKCGRIDLSRQVFDKMPAR------DIVSWNTMIAGYGIHGLGKEATTLFLSMKNQ 502
Query: 145 ELIPDGLTVRSLLCACT 161
PD +T L+ AC+
Sbjct: 503 GFEPDDVTFICLIAACS 519
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 70/132 (53%), Gaps = 9/132 (6%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A D ++ FR+ P+ T+ ++ CS+L L GR +H H + D+ + +++
Sbjct: 83 AIDLYRSMLYFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALID 142
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR-E 145
+Y +C A V +MP R+V+ +WNA++AG A+ + A++ +M+DR
Sbjct: 143 LYIRCARFGPAANVFAKMPMRDVV------AWNAMLAGYANHGMYHHAIAHLLDMQDRGG 196
Query: 146 LIPDGLTVRSLL 157
L P+ T+ SLL
Sbjct: 197 LRPNASTLVSLL 208
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
++ A + C+SL L++G ++H + S D+ N +L+MY K G + +A ++ DE
Sbjct: 307 TSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDE 366
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ ++ I S+ A+++G A EA +F +M+ + PD T+ SL+ AC+
Sbjct: 367 IAIKDTI------SYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACS 418
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 9/125 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS---KSQP 76
+Y+ A+ +Q+ R ST L+ + +L G VH + L + +++
Sbjct: 178 HGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEE 237
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
V++ +L+MY KC L A V M RN + +W+A+I G EA +
Sbjct: 238 QVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEV------TWSALIGGFVLCDRMTEAFN 291
Query: 137 LFSEM 141
LF +M
Sbjct: 292 LFKDM 296
>gi|302822881|ref|XP_002993096.1| hypothetical protein SELMODRAFT_136535 [Selaginella moellendorffii]
gi|300139096|gb|EFJ05844.1| hypothetical protein SELMODRAFT_136535 [Selaginella moellendorffii]
Length = 583
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 8/124 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP+ T+ + CSS L+ G+K+H I++ + + ++ L N +++MY CGSL DA+
Sbjct: 3 VRPNCVTFINTLGACSSAEFLETGKKIHAQIVAGEVELELNLANSLISMYSNCGSLVDAK 62
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
D M +RNV+ SWN IIA + + EA+ LF EM + PD ++ S+
Sbjct: 63 RFFDGMNRRNVV------SWNCIIAAFSGHGHYREAVDLFYEMEKQGFKPDRVSFVSVFD 116
Query: 159 ACTS 162
+ TS
Sbjct: 117 SITS 120
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 10/120 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSK--SQPDVVLQNYILNMYGKCGSLEDARVVSD 102
T+ ++ C+ R+L+ R++H +L+S + + + N ++N Y KCGSL DA+ V +
Sbjct: 157 TFITILGACAEARALKQAREIHSLVLTSGILEKQQLTVGNSLINTYAKCGSLSDAKTVFE 216
Query: 103 EM--PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
M +RNV+ +W +IIA + EA++LF M + + +T ++L AC
Sbjct: 217 SMATAERNVV------TWTSIIAACGLCGHPREALALFHRMELEGIPANEITFGTVLSAC 270
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 16/117 (13%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++S C+ L S + R +H I+S D V+ N ++NM+GKCG +EDAR + + M
Sbjct: 262 TFGTVLSACADLGSTREARCLHGLIVSGGYDRDTVVCNGLINMFGKCGMVEDARAIFERM 321
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
RN L +W ++ E+R + PD +T +LL AC+
Sbjct: 322 RSRN------LVTWTGMLGAYIQQ----------QEIRQAGVAPDEITFVNLLHACS 362
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ CS + + + G +H HIL VL N ++ YG CG+ A++V + +
Sbjct: 353 TFVNLLHACSRMGAKKEGWTIHSHILERGLPSSRVLGNGLVCFYGACGTWLQAKMVFENL 412
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+R D A+WNA I +E++ LF M + PD +T ++L +C+
Sbjct: 413 SER------DAAAWNAAIGVSGQHGFYDESLRLFERMVLEGMEPDEITFTNVLFSCSHSG 466
Query: 165 NV 166
+
Sbjct: 467 EI 468
>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
Length = 669
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 68/113 (60%), Gaps = 7/113 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+S CS L +L GR++H +I D+ L++ +++MY KCG ++ A + +M +
Sbjct: 430 LLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQ 489
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD-RELIPDGLTVRSLLCAC 160
+ SWNA+I G+AS EA+ LF +M + ++ PDG+T++++L AC
Sbjct: 490 TL------SWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGAC 536
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T L+S C +++ GR V++ + + DV ++N +++MY KCG L DA M
Sbjct: 224 TIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAM 283
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P R SWN +I G EA+ +F EM + PDG+T+ S+L AC
Sbjct: 284 PARYT------KSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSAC 333
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S C+ L L+ G VH +I + D +L N ++NMY KCG + A V M
Sbjct: 325 TLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTM 384
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+++V+ SW ++ G A +LF EM+ E++ + + SLL AC+
Sbjct: 385 TKKDVV------SWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACS 435
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
G +H + DV + + ++N YG S+++A V +EM +R+V+ SW ++
Sbjct: 140 GDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVV------SWTSM 193
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
I+ A + ++ + + SEM+ +IP+ +T+ SLL AC
Sbjct: 194 ISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSAC 232
Score = 38.5 bits (88), Expect = 0.95, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED---ARVVSDEMPQRNVIESPDLASW 118
GR V H+ S D + ++ + + D AR V D M Q P+ W
Sbjct: 38 GRLVRAHLTS-----DSFVAGRLIALLASPAARHDMRYARKVFDGMAQ------PNAFVW 86
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTV 153
N +I G +S +A+++F EMR R + PD T+
Sbjct: 87 NCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTM 121
>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
Length = 669
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 68/113 (60%), Gaps = 7/113 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+S CS L +L GR++H +I D+ L++ +++MY KCG ++ A + +M +
Sbjct: 430 LLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQ 489
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD-RELIPDGLTVRSLLCAC 160
+ SWNA+I G+AS EA+ LF +M + ++ PDG+T++++L AC
Sbjct: 490 TL------SWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGAC 536
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T L+S C +++ GR V++ + + DV ++N +++MY KCG L DA M
Sbjct: 224 TIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAM 283
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P R SWN +I G EA+ +F EM + PDG+T+ S+L AC
Sbjct: 284 PARYT------KSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSAC 333
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S C+ L L+ G VH +I + D +L N ++NMY KCG + A V M
Sbjct: 325 TLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTM 384
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+++V+ SW ++ G A +LF EM+ E++ + + SLL AC+
Sbjct: 385 TKKDVV------SWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACS 435
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
G +H + DV + + ++N YG S+E+A V +EM +R+V+ SW ++
Sbjct: 140 GDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVV------SWTSM 193
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
I+ A + ++ + + SEM+ +IP+ +T+ SLL AC
Sbjct: 194 ISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSAC 232
Score = 38.5 bits (88), Expect = 0.95, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED---ARVVSDEMPQRNVIESPDLASW 118
GR V H+ S D + ++ + + D AR V D M Q P+ W
Sbjct: 38 GRLVRAHLTS-----DSFVAGRLIALLASPAARHDMRYARKVFDGMAQ------PNAFVW 86
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTV 153
N +I G +S +A+++F EMR R + PD T+
Sbjct: 87 NCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTM 121
>gi|449453101|ref|XP_004144297.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g26540-like [Cucumis sativus]
gi|449521874|ref|XP_004167954.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g26540-like [Cucumis sativus]
Length = 697
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 6/127 (4%)
Query: 36 NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95
N+ F + Y L CSS R+L RKV H+ + P + L N + YGKCG L+
Sbjct: 52 NSPFPFPHTLYTRLFQLCSSTRALVEARKVESHLATFCPTPPIFLLNRAIEAYGKCGCLK 111
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
DAR + DEMPQR D SWNA+I A EA++L+ ++ + +T+ S
Sbjct: 112 DARELFDEMPQR------DGGSWNAMITAYTQNGYALEALNLYLDLNKSGVYATEVTLAS 165
Query: 156 LLCACTS 162
+L +C S
Sbjct: 166 ILRSCGS 172
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++ +C S+ +L R++H HI+ +V+L++ ++++YGKC + DAR + DE+
Sbjct: 162 TLASILRSCGSVLALHFSRQIHGHIVKCGFVGNVILESSLVDVYGKCRLMNDARSMFDEI 221
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
RN + SWN I+ N EA+S+F +M L+P T + L AC+
Sbjct: 222 QNRNDV------SWNVIVRRYLEVGNGKEAVSMFFQMFRESLMPSSFTFSNALIACS 272
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 75/139 (53%), Gaps = 7/139 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ EAL F L ++ I +T +++ C+ ++ G++VH + + ++ + N
Sbjct: 374 WEEAL-EFVHLMRSSIKDIDRTTLCLILNVCTGSSDVERGKQVHGFVYRTGFYANLYIGN 432
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+L+MYGKCG+L+ A+V +M Q D SWNA++ A + +AM++FSEM+
Sbjct: 433 ALLDMYGKCGNLKSAKVWFYQMSQWR-----DKVSWNALLTAHARHGMSEQAMTIFSEMQ 487
Query: 143 DRELIPDGLTVRSLLCACT 161
E P+ T +LL AC
Sbjct: 488 -LETDPNNFTFATLLGACA 505
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 15/145 (10%)
Query: 20 QNLYNEALVAFDFLQNNT---NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
+ +A+ F +Q T NF T+A L+ C+++ +L+ G+++H ++ +
Sbjct: 473 HGMSEQAMTIFSEMQLETDPNNF-----TFATLLGACANMFALEHGKQIHGFMVRNNYAI 527
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D+VL +++MY KC L+ A V + + R+V+ WN+II G A+
Sbjct: 528 DIVLTGALVDMYCKCRELKYALKVFEHVASRDVV------LWNSIILGCCHNRRDMLAIK 581
Query: 137 LFSEMRDRELI-PDGLTVRSLLCAC 160
LF M E I PD +T + +L AC
Sbjct: 582 LFQLMTMEEGIKPDHVTFQGILLAC 606
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 37/153 (24%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED-------- 96
T++ + CS + +L G ++H ++ + + V+ + +++MY KCG+L +
Sbjct: 263 TFSNALIACSRMAALIEGGQIHGIVVKVGLEENEVISSSLIDMYVKCGTLANAHQVFTQP 322
Query: 97 -----------------------ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
AR + +EMP+RNVI SWNA++AG S E
Sbjct: 323 SSRNLISWTSMVYAYATSGDVLKARELFNEMPERNVI------SWNAMLAGYIHSSQWEE 376
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
A+ MR D T+ +L CT S+V
Sbjct: 377 ALEFVHLMRSSIKDIDRTTLCLILNVCTGSSDV 409
>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
Length = 1753
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 74/137 (54%), Gaps = 7/137 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F +Q + T A ++S C+ L +L LGR++H H++ S ++++ N +
Sbjct: 1232 EALELFRRMQL-AKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGL 1290
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+NMY K GS ++ +V ++ IE+ DL SWN ++AG A+ F +M
Sbjct: 1291 INMYTKSGSFKEGNLVFEK------IENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKD 1344
Query: 145 ELIPDGLTVRSLLCACT 161
PDG+T ++L AC+
Sbjct: 1345 GFEPDGVTFVAVLSACS 1361
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +I C+ + S +L R VH H++ Q ++ + N ++ MYGK G ++DAR V + M
Sbjct: 975 TFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERM 1034
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
R+ + SWN +++G A + + A +F M L P+ +T SLL +
Sbjct: 1035 AVRSCV------SWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSS 1083
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 33/147 (22%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
A ++S L + G+ +H +++ + + ++N ++ +YGK G++ AR++ E+
Sbjct: 1113 AVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKT 1172
Query: 107 RNVIE---------------------------------SPDLASWNAIIAGVASPSNANE 133
+N++ P++ SW+A+I G AS E
Sbjct: 1173 KNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEE 1232
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCAC 160
A+ LF M+ ++ + +T+ S+L C
Sbjct: 1233 ALELFRRMQLAKVKANSVTIASVLSVC 1259
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+ CS L +++H I+ + S L ++++Y G + DA+ V + P
Sbjct: 878 LLQQCSKS---HLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSP--- 931
Query: 109 VIES-PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
IE +L WN+I+ + EA+ ++ MR + DG T ++ AC
Sbjct: 932 -IECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRAC 983
>gi|302793632|ref|XP_002978581.1| hypothetical protein SELMODRAFT_109016 [Selaginella moellendorffii]
gi|300153930|gb|EFJ20567.1| hypothetical protein SELMODRAFT_109016 [Selaginella moellendorffii]
Length = 785
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 8/138 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV-LQNY 83
E L F+Q + P+T+A +S CS+L L+ G+++H ++ + + + N
Sbjct: 549 EGLQHLRFMQQQ-GLDMSPATFASTLSACSNLADLREGKRIHSYVRERRFDTEAATVTNS 607
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++ MYGKCGSL+ AR V + +++ I WNAII+G A S +A+ LF M+
Sbjct: 608 LVTMYGKCGSLDCAREVFETSRRQDTI------CWNAIISGYAQHSQTRDAVELFHRMQQ 661
Query: 144 RELIPDGLTVRSLLCACT 161
+ PD +T +L C+
Sbjct: 662 EGVAPDPVTFVCILSVCS 679
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Query: 41 IRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
++P C L++ C+ L+LGRKVH I + + D++L N +LNMYG+CG +E A
Sbjct: 359 VKPDNVTCVGLLNVCTGSADLKLGRKVHGWIAEGRCEADLILWNSLLNMYGRCGEVEQAE 418
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+V D + QRNVI SW A++ + + + A+ LF + + P +T L
Sbjct: 419 MVFDGILQRNVI------SWTAMLTAYSRQNRQDMALLLFHAIHLSGVKPTCITFLEALD 472
Query: 159 ACTSP 163
AC
Sbjct: 473 ACVGA 477
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
F+ TY L+ CS L++G +H + S S + L N ++ MYG+CG LEDA
Sbjct: 156 GFKSNFVTYVTLVQACSKPEFLEVGIILHMRSVESSSAMETPLCNALITMYGRCGRLEDA 215
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R + M +R++I +WNA+I + EA+ L+ M PD +T +LL
Sbjct: 216 RAIFSSMVERDII------AWNALITEYGQHGHVEEAVLLYQLMLQEGCKPDKVTFVALL 269
Query: 158 CACTSP 163
P
Sbjct: 270 TMSNGP 275
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L++ + +L + VH HI+ S ++ L ++ MY KC SLED R + ++M
Sbjct: 264 TFVALLTMSNGPEALTEVKLVHSHIVESGVSINIALGTALVAMYSKCESLEDTRWLFEKM 323
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
PQRNVI SWN ++ A +A+ + M+ + PD +T LL CT +
Sbjct: 324 PQRNVI------SWNVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGSA 377
Query: 165 NV 166
++
Sbjct: 378 DL 379
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ +I C+ L + +L +PD + L MYG CGS++DA+ V D M
Sbjct: 63 TWTAIIGVCAQHHCHSLAIILLRQMLLEGVKPDNITLLAALTMYGSCGSVDDAKRVFDAM 122
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
P RNVI +W A+I G + ++ +A +F M + +T +L+ AC+ P
Sbjct: 123 PARNVI------TWTAMI-GAHAVTSLEQAFKVFRLMELEGFKSNFVTYVTLVQACSKP 174
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+ C +++L + R++H I+ + V L N++++ YGKC SL+DA + M +N
Sbjct: 1 LLQACPKVKALDVARRLHSQIVRASLDNRVFLGNHLIHTYGKCHSLDDAWETFERMSYKN 60
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
V +W AII A + A+ L +M + PD +T+ + L
Sbjct: 61 VY------TWTAIIGVCAQHHCHSLAIILLRQMLLEGVKPDNITLLAAL 103
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 10/149 (6%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
QN + AL+ F + + ++P+ T+ + C +L GR VH + S + D
Sbjct: 442 QNRQDMALLLFHAIHLSG---VKPTCITFLEALDACVGAEALDKGRLVHSCAVQSGNDID 498
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V L + ++ MYG+CGS+ DA+ D+ R + +W+A+IA E +
Sbjct: 499 VSLGSALVAMYGRCGSIRDAKACFDDTEVRK-----NHVTWSAMIAAFVQHGQDREGLQH 553
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNV 166
M+ + L T S L AC++ +++
Sbjct: 554 LRFMQQQGLDMSPATFASTLSACSNLADL 582
>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Vitis vinifera]
Length = 825
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 71/123 (57%), Gaps = 8/123 (6%)
Query: 42 RPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
+P +AC ++++C S +L+ GR+VH + + + + D ++N +++MY K L DA+
Sbjct: 328 KPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKK 387
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V D M ++NVI S+NA+I G +S +EA+ LF EMR R P LT SLL
Sbjct: 388 VFDVMAEQNVI------SYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGV 441
Query: 160 CTS 162
S
Sbjct: 442 SAS 444
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 6/142 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
Q EAL+ F LQ + A +I C+ L ++ G ++H ++ S DV
Sbjct: 106 QGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVY 165
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ +++ Y K G++E+AR+V D++ ++ + +W IIAG + ++ LF+
Sbjct: 166 VGTSLIDFYSKNGNIEEARLVFDQLSEKTAV------TWTTIIAGYTKCGRSAVSLELFA 219
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
+MR+ ++PD V S+L AC+
Sbjct: 220 QMRETNVVPDRYVVSSVLSACS 241
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 8/124 (6%)
Query: 41 IRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ P Y + ++S CS L L+ G+++H ++L ++ DV + N +++ Y KC ++ R
Sbjct: 226 VVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGR 285
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+ D+M +N+I SW +I+G S EAM LF EM PDG S+L
Sbjct: 286 KLFDQMVVKNII------SWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLT 339
Query: 159 ACTS 162
+C S
Sbjct: 340 SCGS 343
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 85/156 (54%), Gaps = 13/156 (8%)
Query: 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHIL 70
F +Q ++N EAL + LQ + R +P+ T+A LI+ S+L SL+ G++ H+ ++
Sbjct: 506 FGYTQHLEN--EEALKLYSTLQFS---RQKPNEFTFAALITAASNLASLRHGQQFHNQLV 560
Query: 71 SSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN 130
+ N +++MY KCGS+E+AR + + R+V+ WN++I+ A
Sbjct: 561 KMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVV------CWNSMISTHAQHGE 614
Query: 131 ANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
A EA+ +F EM + P+ +T ++L AC+ V
Sbjct: 615 AEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRV 650
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ +SL +L+L +++H I+ D+ + ++++Y KC ++DAR V +EM
Sbjct: 434 TFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEM 493
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++ D+ WNA+ G EA+ L+S ++ P+ T +L+ A +
Sbjct: 494 NEK------DIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAAS 544
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
N R + +A L+ S + + +H I+ S Q D L N ++N+ K +++A
Sbjct: 22 NLRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNA 81
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSL 156
RVV D+MP +N+I +W+++++ + + EA+ +F ++ R P+ + S+
Sbjct: 82 RVVFDKMPHKNLI------TWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASV 135
Query: 157 LCACT 161
+ ACT
Sbjct: 136 IRACT 140
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 77/141 (54%), Gaps = 7/141 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N + EAL F +Q +N + T +++ C+ L +L+LG V +I + + D +
Sbjct: 319 NRFIEALALFREMQM-SNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFV 377
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MY KCG++ A+ V EM + D +W A+I G+A + EA+++FS
Sbjct: 378 GNALIDMYFKCGNVGKAKKVFKEMHHK------DKFTWTAMIVGLAINGHGEEALAMFSN 431
Query: 141 MRDRELIPDGLTVRSLLCACT 161
M + + PD +T +LCACT
Sbjct: 432 MIEASITPDEITYIGVLCACT 452
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 25/141 (17%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S CS L+ L+ G+ ++ +I + +++L+N +++M+ CG +++A+ V D M
Sbjct: 210 TLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNM 269
Query: 105 PQRNVIE-------------------------SPDLASWNAIIAGVASPSNANEAMSLFS 139
R+VI D SW A+I G + EA++LF
Sbjct: 270 KNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFR 329
Query: 140 EMRDRELIPDGLTVRSLLCAC 160
EM+ + PD T+ S+L AC
Sbjct: 330 EMQMSNVKPDEFTMVSILTAC 350
Score = 38.5 bits (88), Expect = 0.99, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNM--YGKCGSLEDARVVSDEMPQ 106
L+ C S+ L +++H H + D + Q ++ + G + AR V D +PQ
Sbjct: 13 LLEKCKSMYQL---KQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQ 69
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
P L WN +I G + ++ +S++ M + PD T LL
Sbjct: 70 ------PTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLL 114
>gi|302801598|ref|XP_002982555.1| hypothetical protein SELMODRAFT_116494 [Selaginella moellendorffii]
gi|300149654|gb|EFJ16308.1| hypothetical protein SELMODRAFT_116494 [Selaginella moellendorffii]
Length = 260
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 10/146 (6%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLI--STCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+ EA F +++ +RP+ CLI CS ++ GR++H I + + +
Sbjct: 11 WGEAFQLFKTMKSRGG--VRPNAVTCLIILDACSDFGTVGDGREIHAEIKAGGLDSQLRV 68
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N ++NMYGKCGSL DAR V D M +RNV+ SW +++A + N+A+ L+
Sbjct: 69 NNTLVNMYGKCGSLADAREVFDSMRERNVV------SWTSMLAAYTHQGHGNKALELYRT 122
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M + + D + S+L A +V
Sbjct: 123 MELQGMELDDVAFVSVLSALGHAGSV 148
>gi|302808039|ref|XP_002985714.1| hypothetical protein SELMODRAFT_459 [Selaginella moellendorffii]
gi|300146623|gb|EFJ13292.1| hypothetical protein SELMODRAFT_459 [Selaginella moellendorffii]
Length = 659
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 5/117 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C + +L LGR++H+ I DVV+ + +++MY KCGSLE+A V M
Sbjct: 445 TFITTLAACVTASALPLGRRLHEQIRQRGLHSDVVVASALVDMYSKCGSLEEAYQVFSTM 504
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R + A+WNA+IAG A + A SL EM+ + PD LT LL ACT
Sbjct: 505 AGRR-----NSATWNALIAGHAQHGFSGRAPSLVREMQLEGVEPDSLTYVGLLLACT 556
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 8/136 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
N+ L AF L+ I P+ T ++S C++L S+ LG ++H I+ D VL
Sbjct: 15 NDPLAAFTLLRQMQADGIPPNRITLVEILSACTALHSIHLGDRIHQWIIDLGLHRDSVLG 74
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+L + +CGSL+ A+ + ++ DL +WNAII + + +++A+ LF M
Sbjct: 75 TALLTTFARCGSLDRAKAAFTAIARK------DLIAWNAIITATSHSNRSHDALDLFRRM 128
Query: 142 RDRELIPDGLTVRSLL 157
+ + P+ +T+ ++L
Sbjct: 129 QLDGIHPNAITLVAVL 144
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 15/145 (10%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS---TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
+++AL+ F +Q + PS T+ I C++L GR +H I S + D +
Sbjct: 325 FSDALLLFRTMQ----LQGVPSDAITFVSTIDACTALEDFPTGRALHGIISESSLETDTI 380
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ ++N Y K L+ A QR I PDL +WN +IA +N++ A+ +F
Sbjct: 381 VATALVNFYSKSRRLDAATAAF----QR--IHEPDLVAWNVLIAAHVDNANSSTALEIF- 433
Query: 140 EMRDRELIPDGLTVRSLLCACTSPS 164
EL PD +T + L AC + S
Sbjct: 434 -FHRMELKPDRITFITTLAACVTAS 457
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDE---MPQRNVIESPDLASWNAIIAGVASPSNANE 133
D VL ++ M+ KCGS+ AR + E +RN + WNAIIA + + ++
Sbjct: 274 DAVLATSLVTMFAKCGSVAHAREIFRENFHCHERNPV------VWNAIIAALVQNHDFSD 327
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACTS 162
A+ LF M+ + + D +T S + ACT+
Sbjct: 328 ALLLFRTMQLQGVPSDAITFVSTIDACTA 356
Score = 38.5 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 62 GRKVHDHIL-SSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNA 120
R VH + S+ V + N I+NMY +C L+ AR+ + +NV+ SWN
Sbjct: 154 ARAVHSLAMESAMDASTVAVGNSIVNMYARCRDLDRARLAFARIQSKNVV------SWNV 207
Query: 121 IIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+I+ S + +++F M + D T +L +PS
Sbjct: 208 MISA-HSQLDRLHPLAMFHAMMLEGIKADATTFVNLASGLAAPS 250
>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
Length = 805
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 8/122 (6%)
Query: 41 IRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
IRP Y ++ +C+ L GR+VH H++ DV + N ++ MY KCG + AR
Sbjct: 131 IRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSAR 190
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
++ D+MP R+ I SWNA+I+G E + LF MR+ + PD +T+ S++
Sbjct: 191 MLFDKMPTRDRI------SWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVIS 244
Query: 159 AC 160
AC
Sbjct: 245 AC 246
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 75/154 (48%), Gaps = 13/154 (8%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSS 72
N I N EAL+ F + +P++ + +S C+ + +L G+++H H L +
Sbjct: 411 NGLRINNRCFEALIFF----RKMILKSKPNSVTLISALSACARVGALMCGKEIHAHALKA 466
Query: 73 KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNAN 132
D L N IL++Y +CG + A + Q N+ E D+ +WN ++ G A
Sbjct: 467 GMGFDGFLPNAILDLYVRCGRMRTA------LNQFNLNEK-DVGAWNILLTGYAQKGKGA 519
Query: 133 EAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
M LF M + E+ PD +T SLLCAC+ V
Sbjct: 520 MVMELFKRMVESEINPDDVTFISLLCACSRSGMV 553
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A ++S C+SL L +G K+H+ + VV+ N +++MY KC +E A + ++
Sbjct: 339 TIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQI 398
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P ++VI SW ++I G+ + EA+ F +M + P+ +T+ S L AC
Sbjct: 399 PDKDVI------SWTSVINGLRINNRCFEALIFFRKMILKSK-PNSVTLISALSACA 448
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+E L + I P T +IS C L +LG ++H +++ + ++ +
Sbjct: 215 DECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVY 274
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N ++ MY G ++A V M R+V+ SW II+G ++A+ + M
Sbjct: 275 NSLIQMYLSVGHWKEAESVFSGMECRDVV------SWTTIISGCVDNLLPDKALETYKTM 328
Query: 142 RDRELIPDGLTVRSLLCACTS 162
+PD +T+ S+L AC S
Sbjct: 329 EITGTMPDEVTIASVLSACAS 349
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSS-KSQPDVVLQNYILNMYGKCGSLEDARV 99
+ + LI C + R G V +LSS + V L N +L+M+ + G + +A
Sbjct: 31 VEEDCFVALIRLCENKRGYSEGEYVWKAVLSSLVTLLSVRLGNALLSMFVRFGDVGNAWN 90
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V M +R DL SWN ++ G +EA+ L+ + + PD T S+L +
Sbjct: 91 VFGRMGER------DLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSVLRS 144
Query: 160 CTSPSNVL 167
C +++
Sbjct: 145 CAGAMDLV 152
>gi|302143464|emb|CBI22025.3| unnamed protein product [Vitis vinifera]
Length = 489
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 27/159 (16%)
Query: 29 AFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY 88
AFD + +++ PS ++ L+ +C S SL LG+++H I++S D + N++LN+Y
Sbjct: 40 AFD--RFSSHIWSEPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLY 97
Query: 89 GKCGSLEDARVVSDEMPQRNVI-----------------------ESPD--LASWNAIIA 123
KCG L+ A + MP++N++ E P+ +A+WNA++A
Sbjct: 98 SKCGQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVA 157
Query: 124 GVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
G+ E + LFS M + +PD + S+L C
Sbjct: 158 GLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAG 196
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
IQ +NE + N F ++ C+ LR+L GR+VH ++ + ++
Sbjct: 160 IQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNL 219
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
V+ + + +MY KCGSL + + MP +NV+ +WN +IAG A E + +
Sbjct: 220 VVVSSLAHMYMKCGSLGEGERLIRAMPSQNVV------AWNTLIAGRAQNGYPEEVLDQY 273
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
+ M+ PD +T S++ +C+
Sbjct: 274 NMMKMAGFRPDKITFVSVISSCS 296
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 74/142 (52%), Gaps = 6/142 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
QN Y E ++ + FR T+ +IS+CS L +L G+++H ++ + + V
Sbjct: 262 QNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVS 321
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ + +++MY +CG LE + V E E+ D+ W+++IA EA+ LF+
Sbjct: 322 VISSLISMYSRCGCLEYSLKVFLE------CENGDVVCWSSMIAAYGFHGRGVEAIDLFN 375
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
+M +L + +T SLL AC+
Sbjct: 376 QMEQEKLEANDVTFLSLLYACS 397
>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
Length = 886
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 79/147 (53%), Gaps = 11/147 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV-- 79
N+AL F + + + + P+ Y +C++ C+ L SL++G+++H ++ V
Sbjct: 492 NDALKLFSEMISKP-YAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYF 550
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ N +++MY KCG ++ AR V D MP+RN + SW ++++G EA+ +F
Sbjct: 551 VANCLIDMYSKCGDVDTARNVFDSMPKRNEV------SWTSMMSGYGMHGRGKEALDIFD 604
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNV 166
+M+ +PD ++ LL AC+ V
Sbjct: 605 KMQKAGFVPDDISFLVLLYACSHSGMV 631
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 20/154 (12%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSS------------KS 74
A D Q + P+ T L+S C+SL +L G + H + L
Sbjct: 379 ALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGD 438
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
D+V+ N +++MY KC S + AR + + +P+R ++ +W +I G A ++N+A
Sbjct: 439 GEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRE----RNVVTWTVMIGGYAQYGDSNDA 494
Query: 135 MSLFSEM--RDRELIPDGLTVRSLLCACTSPSNV 166
+ LFSEM + + P+ T+ +L AC S++
Sbjct: 495 LKLFSEMISKPYAVAPNAYTISCILMACAHLSSL 528
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 6/111 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ C+SL++L +++H + + + + D + N +++ Y KCGS++DA V N
Sbjct: 265 ILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVF------N 318
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V+E D+ SWNA++ G A LF MR + D +T +++
Sbjct: 319 VMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAG 369
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
+ C L S + G H I + + +V + N ++ MY + GSLEDA +V DE+ ++ +
Sbjct: 156 LKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGI 215
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
D+ SWN+I+A SN A+ LFSEM
Sbjct: 216 ---DDVISWNSIVAAHVKGSNPRTALDLFSEM 244
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 23/162 (14%)
Query: 1 MIRNLKTQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYAC--LISTCSSLRS 58
MIR T RF L + + ++P +A + +C+ L
Sbjct: 789 MIRGFATDGRF---------------LSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSD 833
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118
LQ G+ +H H++ D+ + +++MY KCG +E AR+V D+M R DL SW
Sbjct: 834 LQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVR------DLVSW 887
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
++I+G A +E + F MR +IP+ +++ S+L AC
Sbjct: 888 TSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLAC 929
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
EAL F + + P T ++S C+ L +++ G VH ++ + D+ L N
Sbjct: 187 EEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNS 246
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+LN+Y K G + A + +MP+++VI SW+ +IA A+ ANEA++LF EM +
Sbjct: 247 LLNLYAKTGCEKIAANLFSKMPEKDVI------SWSTMIACYANNEAANEALNLFHEMIE 300
Query: 144 RELIPDGLTVRSLLCACTSPSNV 166
+ P+ +TV S L AC N+
Sbjct: 301 KRFEPNSVTVVSALQACAVSRNL 323
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 8/143 (5%)
Query: 20 QNLYN-EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
N YN E L FD ++++ R S + L++ C +L +L+ G H +++ + + D+
Sbjct: 896 HNGYNSETLGFFDLMRSSGVIPNRVSILSVLLA-CGNLGALRKGEWFHSYVIQTGFEFDI 954
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
++ I++MY KCGSL+ AR + DE + DL W+A+IA + +A+ LF
Sbjct: 955 LVATAIMDMYSKCGSLDLARCLFDETAGK------DLVCWSAMIASYGIHGHGRKAIDLF 1008
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
+M + P +T +L AC+
Sbjct: 1009 DQMVKAGVRPSHVTFTCVLSACS 1031
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 8/119 (6%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
+ C+ LR L+LG+ +H + D+ + + ++ +Y KCG + +A V +E
Sbjct: 110 LKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEE----- 164
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE-LIPDGLTVRSLLCACTSPSNV 166
+ PD W +++ G ++ EA++LFS+M + ++ D +T+ S++ AC NV
Sbjct: 165 -FQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNV 222
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
NEAL + R P+ T + C+ R+L+ G+K+H + + D +
Sbjct: 289 NEAL---NLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVS 345
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+++MY KC ++A + +P+++V+ SW A+++G A A ++M +F M
Sbjct: 346 TALIDMYMKCSCPDEAVDLFQRLPKKDVV------SWVALLSGYAQNGMAYKSMGVFRNM 399
Query: 142 RDRELIPDGLTVRSLLCA 159
+ PD + V +L A
Sbjct: 400 LSDGIQPDAVAVVKILAA 417
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 41 IRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I+P A +++ S L Q +H +++ S +V + ++ +Y KCGSL DA
Sbjct: 404 IQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAV 463
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSLL 157
+ M R+V+ W+++IA EA+ +F +M ++ + P+ +T S+L
Sbjct: 464 KLFKGMIVRDVV------IWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSIL 517
Query: 158 CACTSPSNV 166
AC+ V
Sbjct: 518 SACSHAGLV 526
Score = 42.0 bits (97), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 10/115 (8%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L C++ RS+ ++H + + D + ++Y KC SL+ AR V DE P
Sbjct: 10 LFQACNNGRSVS---QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPH-- 64
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMR-DRELIPDGLTVRSLLCACTS 162
P++ WN+ + E + LF M PD T+ L AC
Sbjct: 65 ----PNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAG 115
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS-KSQPD 77
I EAL FD + N+ R T+ ++S CS ++ G K+ D ++ + +PD
Sbjct: 486 IHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPD 545
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIA 123
++++ G+ G L A + + MP + P + W A++
Sbjct: 546 SEHFGIMVDLLGRIGQLGKAMDIINRMP---IPAGPHV--WGALLG 586
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
+K H I + Q D + MY ++ A +V +++P +P WN +I
Sbjct: 737 KKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIP------NPCSFLWNVMI 790
Query: 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
G A+ ++ L+S+M ++ L PD L +C S++
Sbjct: 791 RGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDL 834
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
++ A D +RPS T+ C++S CS L+ G K++ +++ +
Sbjct: 996 GIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEG-KMYFQLMTEEFVIAR 1054
Query: 79 VLQNY--ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIA 123
L NY ++++ G+ G L +A + + MP PD + W +++
Sbjct: 1055 KLSNYACMVDLLGRAGQLSEAVDLIENMPVE-----PDASIWGSLLG 1096
>gi|302773325|ref|XP_002970080.1| hypothetical protein SELMODRAFT_171135 [Selaginella moellendorffii]
gi|300162591|gb|EFJ29204.1| hypothetical protein SELMODRAFT_171135 [Selaginella moellendorffii]
Length = 829
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 7/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKCGSLEDARVVSDE 103
T+ ++ C+S+R++ LG+ +H+ I++ DV+L N I+NMYGKCG ++ AR V +
Sbjct: 145 TFVSVLDACASMRAIALGKSIHERIVADGLLGDDVILGNTIVNMYGKCGEVDLAREVFER 204
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
M +N + +WN +IA + EA +L EM L P+ +T+ S++ AC
Sbjct: 205 MEAKNAV------TWNTMIAACSRHDRYKEAFALLGEMDLDGLRPNKITLVSVIDAC 255
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 5/118 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ +C ++ +L LG ++HD + S + D VLQ +++MYGKCG+ + AR D M
Sbjct: 348 TFVNLLESCVAIAALALGEEIHDRLAESGIELDPVLQTALVDMYGKCGNPDAARRAFDRM 407
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ D+ WNA++A E + +F+ M + + PD +T S+L AC S
Sbjct: 408 S-----DVRDVTVWNALLAAYVLRDQGKETLGIFARMSLQGVAPDAVTFLSILDACAS 460
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 11/124 (8%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHIL-------SSKSQPDVVLQNYILNMYGKCGSLEDA 97
T+ ++ C+SL +L LGR H +L + + D+ L ++NMY KCGSL DA
Sbjct: 450 TFLSILDACASLAALGLGRLTHSRMLERGLFDRQAVASADL-LTTSVINMYAKCGSLADA 508
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+ E + + D+ +W+A++A + + EA+ F M+ + PD ++ S +
Sbjct: 509 KA---EFAKARRARASDVVAWSAMVAAYSQFGLSEEALRCFYSMQQEGVKPDSVSFVSAI 565
Query: 158 CACT 161
C+
Sbjct: 566 AGCS 569
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 41 IRPSTYACL--ISTCSSLRSLQLGRKVHDHIL-SSKSQPDVVLQNYILNMYGKCGSLEDA 97
+ P +C+ + +SL L G H + +S DVV+ +L MY +CGS+ A
Sbjct: 37 VAPDRVSCIAILDAFASLGDLSQGEFFHRTVCEASGLGSDVVVATAVLTMYNRCGSVSHA 96
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R D M RNV+ SW+A+IA A + +A+ LF M + + +T S+L
Sbjct: 97 RRAFDAMVVRNVV------SWSAMIAAYAQRGHPGDALELFVRMDHEGVKANAITFVSVL 150
Query: 158 CACTS 162
AC S
Sbjct: 151 DACAS 155
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 8/124 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP+ T +I C+ ++S+ GR VH+ + + D + N ++N+YGKCG L AR
Sbjct: 241 LRPNKITLVSVIDACAWMQSIVRGRIVHEIVAGEGLESDNTVANALVNLYGKCGKLRAAR 300
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+ IE+ D SW ++A A + A+++ M + D T +LL
Sbjct: 301 HALEG------IETRDKISWTTLLAAYARHGHGKRAIAVIKRMDHEGVKLDSFTFVNLLE 354
Query: 159 ACTS 162
+C +
Sbjct: 355 SCVA 358
>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
Length = 782
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 79/142 (55%), Gaps = 7/142 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F +Q R +T ++ TC+ L +LQ GR++H HI+ + + ++V++ +
Sbjct: 392 EALQLFQEMQLEGR-RPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETAL 450
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+NMYGKCG + +AR V ++M +R D+ WN+++ A +E + LF++M+
Sbjct: 451 INMYGKCGKMAEARSVFEKMAKR------DILVWNSMLGAYAQHGYYDETLQLFNQMQLD 504
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
D ++ S+L A + +V
Sbjct: 505 GEKADAVSFVSVLSALSHSGSV 526
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 71/127 (55%), Gaps = 8/127 (6%)
Query: 42 RPST--YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
+P T + L+ CSS +++ GR+VH H+ + + ++ +++ MY +CGS+ +A+
Sbjct: 2 KPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 61
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V + ++E D+ +W +I + + A+ +F +M++ +++P +T ++L A
Sbjct: 62 VFE------ILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNA 115
Query: 160 CTSPSNV 166
C S ++
Sbjct: 116 CASTESL 122
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
Q Y+ AL F +Q + P+ TY +++ C+S SL+ G ++H IL + D
Sbjct: 84 QGDYDRALGMFYQMQEED---VMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGD 140
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + ++NMY KCGS+ A + R+V+ SW A+IA A L
Sbjct: 141 VFVGTALINMYNKCGSVRGAWDSFKRLEHRDVV------SWTAMIAACVQHDQFALARWL 194
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSP 163
+ M+ ++P+ +T+ ++ A P
Sbjct: 195 YRRMQLDGVVPNKITLYTVFNAYGDP 220
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 12/150 (8%)
Query: 12 TFYNSQPIQNL-YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHIL 70
TFY +QN + EA+ F LQ + + T+ +++ +SL SL G+ +H+ +
Sbjct: 281 TFY----VQNENFGEAVRLFGRLQQD-GIKANDITFVLMLNVYTSLTSLAKGKVIHELVK 335
Query: 71 SSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN 130
+ DVV+ ++++YG+C + A + +M ++VI +W + A
Sbjct: 336 EAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVI------TWTVMCVAYAQNGF 389
Query: 131 ANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
EA+ LF EM+ P T+ ++L C
Sbjct: 390 RKEALQLFQEMQLEGRRPTSATLVAVLDTC 419
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118
L G+ ++ + S + DV + N +NM+G G L DAR + ++M R+V+ +W
Sbjct: 223 LSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVV------TW 276
Query: 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
N +I N EA+ LF ++ + + +T +L TS
Sbjct: 277 NIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTS 320
>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
Length = 526
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 81/147 (55%), Gaps = 17/147 (11%)
Query: 21 NLYNEALVAF-DFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHI---LSSKS 74
NLY EAL+ F + L++ + P+ T ++ C+ L ++ +GR +H +I L +
Sbjct: 300 NLYKEALLLFQEMLRSGES----PNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVT 355
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+L + +++MY KCG +E A+ V D M R+ L+SWNA+I G A AN A
Sbjct: 356 NASSLLTS-LIDMYAKCGDIEAAKQVFDSMLTRS------LSSWNAMIFGFAMHGKANAA 408
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCACT 161
LFS+MR + PD +T LL AC+
Sbjct: 409 FDLFSKMRKNGIDPDDITFVGLLSACS 435
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 33/186 (17%)
Query: 7 TQLRFTFYNSQPIQNLY-NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKV 65
T R +S P+ LY +++ L N F L+ +C+ ++ + G+++
Sbjct: 58 TMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPF-------LLKSCAKSKAFREGQQI 110
Query: 66 HDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI--------------- 110
H H+L D+ + +++MY + G LEDAR V D+ R+V+
Sbjct: 111 HGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIKGYASRGYI 170
Query: 111 --------ESP--DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
E P D+ SWNA+I+G A N EA+ LF +M + PD T+ +++ AC
Sbjct: 171 ENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSAC 230
Query: 161 TSPSNV 166
++
Sbjct: 231 AQSGSI 236
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 7/139 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y EAL F + TN R ST ++S C+ S++LGR+VH I ++ + N
Sbjct: 201 YKEALELFKDMMK-TNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVN 259
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++++Y KCG +E A + + + ++VI SWN +I G + EA+ LF EM
Sbjct: 260 ALIDLYSKCGEVETACGLFEGLSYKDVI------SWNTLIGGYTHMNLYKEALLLFQEML 313
Query: 143 DRELIPDGLTVRSLLCACT 161
P+ +T+ S+L AC
Sbjct: 314 RSGESPNDVTMLSILPACA 332
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
++ +A AFD I P T+ L+S CS L LGR HI S SQ +
Sbjct: 401 MHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGR----HIFRSMSQDYKI 456
Query: 80 ---LQNY--ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN 130
L++Y ++++ G CG ++A+ + MP PD W +++ +N
Sbjct: 457 TPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPME-----PDGVIWCSLLKACKMHNN 507
>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 672
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 11/118 (9%)
Query: 25 EALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+AL AF ++ + P ST+ C I +CSSL L G+++H D+ + +
Sbjct: 69 QALYAFSSMRK---LSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQQAFVFGYGSDIFVAS 125
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+++MY KCG L DAR + DE+P+RNV+ SW ++I+G A EA+ LF E
Sbjct: 126 ALIDMYSKCGYLNDARKLFDEIPERNVV------SWTSMISGYVQNERAREAVFLFKE 177
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 6/137 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EA F + R T + ++ C+ +LQ+G+ +HD ++ + + ++V+ I
Sbjct: 282 EAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSI 341
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MY KCG +E AR D + ++NV SW ++AG + EAM +F EM
Sbjct: 342 VDMYCKCGRVEMARKAFDRLKRKNV------KSWTVMVAGYGMHGHGKEAMKVFYEMIRC 395
Query: 145 ELIPDGLTVRSLLCACT 161
+ P+ +T S+L AC+
Sbjct: 396 GIKPNYITFVSVLAACS 412
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 7/115 (6%)
Query: 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106
C+IS C+ + + VH + + + + N +++ Y KCG + +R V D M
Sbjct: 202 GCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGM-- 259
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR-ELIPDGLTVRSLLCAC 160
E D+ SWN++IA A + EA SLFS+M R E+ + +T+ ++L AC
Sbjct: 260 ----EETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLAC 310
>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
Length = 886
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 82/147 (55%), Gaps = 11/147 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHIL-SSKSQPDV-V 79
N+AL F + + + + P+ Y +C++ C+ L +L++G+++H ++ + +P V
Sbjct: 492 NDALKIFSEMISKP-YAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYF 550
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ N +++MY KCG ++ AR V D MP+RN + SW ++++G EA+ +F
Sbjct: 551 VANCLIDMYSKCGDVDTARNVFDSMPKRNEV------SWTSMMSGYGMHGRGKEALDIFD 604
Query: 140 EMRDRELIPDGLTVRSLLCACTSPSNV 166
+M+ +PD ++ LL AC+ V
Sbjct: 605 KMQKAGFVPDDISFLVLLYACSHSGMV 631
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
+ C L S GR +H I + + +V + N ++ MY +CGSLEDA +V DE+ ++ +
Sbjct: 156 LKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGI 215
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
D+ SWN+I+A SN A+ LFSEM
Sbjct: 216 ---DDVISWNSIVAAHVKGSNPRTALELFSEM 244
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ C+SL++L +++H + + + + D + N +++ Y KCGS+ DA V N
Sbjct: 265 ILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVF------N 318
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
V+E D+ SWNA++ G N A LF MR + D +T +++
Sbjct: 319 VMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVI 367
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 66/127 (51%), Gaps = 18/127 (14%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSS------------KSQPDVVLQNYILNMYGKCGSLED 96
L+S C+SL +L G ++H + L D+++ N +++MY KC S +
Sbjct: 401 LLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKA 460
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM--RDRELIPDGLTVR 154
AR + D +P+R ++ +W +I G A ++N+A+ +FSEM + + P+ T+
Sbjct: 461 ARSIFDSIPRRE----RNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTIS 516
Query: 155 SLLCACT 161
+L AC
Sbjct: 517 CILMACA 523
>gi|297798072|ref|XP_002866920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312756|gb|EFH43179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 559
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 51/148 (34%), Positives = 74/148 (50%), Gaps = 11/148 (7%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
LY EAL F + N +TY C + + + L LG+ +H IL S +
Sbjct: 187 LYKEALDTFSKMDVEPNL----ATYVCALVSSGRVGCLSLGKGIHGLILKRASLISLETG 242
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N +++MY KC L DA V E+ ++ D SWN++I+G+ +NEA+ LFS M
Sbjct: 243 NALIDMYVKCEQLSDAMTVFGELQKK------DKVSWNSMISGLVHCERSNEAIELFSMM 296
Query: 142 RDRELI-PDGLTVRSLLCACTSPSNVLY 168
+ I PDG + S+L AC S V Y
Sbjct: 297 QTSSGIKPDGHILTSVLSACASLGAVDY 324
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 76/137 (55%), Gaps = 6/137 (4%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
NEA+ F +Q ++ + ++S C+SL ++ GR VH+++LS+ + D +
Sbjct: 287 NEAIELFSMMQTSSGIKPDGHILTSVLSACASLGAVDYGRWVHEYVLSAGIKWDTHIGTA 346
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
I++MY KCG +E A + + + ++NV +WNA++ G+A + +E++ F EM
Sbjct: 347 IVDMYAKCGYIETALKIFNGIRRKNVF------TWNALLGGLAIHGHGHESLRYFEEMVK 400
Query: 144 RELIPDGLTVRSLLCAC 160
P+ +T ++L AC
Sbjct: 401 LGFKPNLVTFLAILNAC 417
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ + C ++ G+++H + D+ +QN +++ YG CG +A V D+M
Sbjct: 108 TFPPVFKACGKFSGIREGKQIHGTVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFDQM 167
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
P R+V+ SW II G EA+ FS+M
Sbjct: 168 PVRDVV------SWTGIITGFTRTGLYKEALDTFSKM 198
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,472,832,605
Number of Sequences: 23463169
Number of extensions: 87763155
Number of successful extensions: 266974
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5770
Number of HSP's successfully gapped in prelim test: 3908
Number of HSP's that attempted gapping in prelim test: 207151
Number of HSP's gapped (non-prelim): 41719
length of query: 170
length of database: 8,064,228,071
effective HSP length: 130
effective length of query: 40
effective length of database: 9,308,983,397
effective search space: 372359335880
effective search space used: 372359335880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)