BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038114
         (170 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2EWO|A Chain A, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
           Northeast Structural Genomics Target Smr6.
 pdb|2EWO|B Chain B, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
           Northeast Structural Genomics Target Smr6.
 pdb|2EWO|C Chain C, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
           Northeast Structural Genomics Target Smr6.
 pdb|2EWO|D Chain D, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
           Northeast Structural Genomics Target Smr6.
 pdb|2EWO|E Chain E, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
           Northeast Structural Genomics Target Smr6.
 pdb|2EWO|F Chain F, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
           Northeast Structural Genomics Target Smr6.
 pdb|2EWO|G Chain G, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
           Northeast Structural Genomics Target Smr6.
 pdb|2EWO|H Chain H, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
           Northeast Structural Genomics Target Smr6.
 pdb|2EWO|I Chain I, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
           Northeast Structural Genomics Target Smr6.
 pdb|2EWO|J Chain J, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
           Northeast Structural Genomics Target Smr6.
 pdb|2EWO|K Chain K, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
           Northeast Structural Genomics Target Smr6.
 pdb|2EWO|L Chain L, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
           Northeast Structural Genomics Target Smr6
          Length = 377

 Score = 28.1 bits (61), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 10/107 (9%)

Query: 14  YNSQPIQNLYNEALVAFDFLQNNTNFRIRP--------STYACLISTCSSLRSLQ--LGR 63
           Y        Y EA  A+DFL   T+ + RP        +   C +   +++  ++  + R
Sbjct: 239 YTDDKEHPFYQEAKAAYDFLSQQTDAKGRPLKVHKXCVTKEPCYLQEAATIDYVEGSIPR 298

Query: 64  KVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI 110
           +  +  ++S     +V    IL  YG        + V +  P R V+
Sbjct: 299 EEGEXAIASYLNFLIVNGGIILPQYGDENDQLAKQQVQEXFPDRKVV 345


>pdb|3T4E|A Chain A, 1.95 Angstrom Crystal Structure Of Shikimate
           5-Dehydrogenase (Aroe) From Salmonella Enterica Subsp.
           Enterica Serovar Typhimurium In Complex With Nad
 pdb|3T4E|B Chain B, 1.95 Angstrom Crystal Structure Of Shikimate
           5-Dehydrogenase (Aroe) From Salmonella Enterica Subsp.
           Enterica Serovar Typhimurium In Complex With Nad
          Length = 312

 Score = 28.1 bits (61), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 20  QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLR 57
           Q+ + EAL + D L N T   ++P     LI   S LR
Sbjct: 211 QHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLR 248


>pdb|3R5E|A Chain A, Transaldolase From Corynebacterium Glutamicum
          Length = 360

 Score = 27.7 bits (60), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 124 GVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
           G A  +NA  A +++ E+ D   +P+G   +  L A T   N  Y
Sbjct: 227 GKAGVANAQRAYAVYKELFDAAELPEGANTQRPLWASTGVKNPAY 271


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.132    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,628,187
Number of Sequences: 62578
Number of extensions: 157466
Number of successful extensions: 349
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 3
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)