BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038114
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2
SV=1
Length = 768
Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/152 (48%), Positives = 96/152 (63%), Gaps = 6/152 (3%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS 74
NS N Y EAL AFDF Q N++F+IR TY LI CSS RSL GRK+HDHIL+S
Sbjct: 39 NSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNSNC 98
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+ D +L N+IL+MYGKCGSL DAR V D MP+RN L S+ ++I G + EA
Sbjct: 99 KYDTILNNHILSMYGKCGSLRDAREVFDFMPERN------LVSYTSVITGYSQNGQGAEA 152
Query: 135 MSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+ L+ +M +L+PD S++ AC S S+V
Sbjct: 153 IRLYLKMLQEDLVPDQFAFGSIIKACASSSDV 184
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 6/114 (5%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
+ CSSL G ++H + S+ + + + +MY +CG L AR V D+
Sbjct: 277 LKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQ------ 330
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
IE PD ASWN IIAG+A+ A+EA+S+FS+MR IPD +++RSLLCA T P
Sbjct: 331 IERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKP 384
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T L+ C + SL+LG +VH + L + P+ ++N +++MY KCGSL AR + D M
Sbjct: 475 TMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSM 534
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
R+V+ SW+ +I G A EA+ LF EM+ + P+ +T +L AC+
Sbjct: 535 DNRDVV------SWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACS 585
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 7/119 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
+ +I C+S + LG+++H ++ +S ++ QN ++ MY + + DA V +
Sbjct: 170 AFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGI 229
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCACTS 162
P + DL SW++IIAG + EA+S EM + P+ S L AC+S
Sbjct: 230 PMK------DLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSS 282
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
+L G ++H +I+ D+ + N +L MY C L + ++ RN + D S
Sbjct: 386 ALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDF--RN---NADSVS 440
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
WN I+ E + LF M E PD +T+ +LL C S++
Sbjct: 441 WNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSL 489
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 97.4 bits (241), Expect = 3e-20, Method: Composition-based stats.
Identities = 49/102 (48%), Positives = 62/102 (60%), Gaps = 6/102 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
STY LI CS R+L+ G+KVH+HI +S P +V+ N +L MY KCGSL DAR V DE
Sbjct: 86 STYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDE 145
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
MP R DL SWN ++ G A EA LF EM +++
Sbjct: 146 MPNR------DLCSWNVMVNGYAEVGLLEEARKLFDEMTEKD 181
Score = 74.7 bits (182), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 8/122 (6%)
Query: 42 RPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
RP+ T+A +++ C+ L + +LG++VH ++ P + +++MY KCG++E A+
Sbjct: 316 RPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKH 375
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V D P+ PDL SW ++I G A +EA+ F + PD +T ++L A
Sbjct: 376 VVDGCPK------PDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSA 429
Query: 160 CT 161
CT
Sbjct: 430 CT 431
Score = 69.7 bits (169), Expect = 9e-12, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 75/136 (55%), Gaps = 6/136 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EALV + +Q N R T + ++ ++++ ++ G+++H HI+ + D VL + +
Sbjct: 200 EALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSL 259
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MYGKCG +++AR + D++ +++V+ SW ++I S E SLFSE+
Sbjct: 260 MDMYGKCGCIDEARNIFDKIVEKDVV------SWTSMIDRYFKSSRWREGFSLFSELVGS 313
Query: 145 ELIPDGLTVRSLLCAC 160
P+ T +L AC
Sbjct: 314 CERPNEYTFAGVLNAC 329
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 79/138 (57%), Gaps = 6/138 (4%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
NEAL+ F LQ N ++ T +S C+ + +L+LGR +H +I + + + +
Sbjct: 346 NEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSA 405
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+++MY KCG LE +R V N +E D+ W+A+I G+A NEA+ +F +M++
Sbjct: 406 LIHMYSKCGDLEKSREVF------NSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQE 459
Query: 144 RELIPDGLTVRSLLCACT 161
+ P+G+T ++ CAC+
Sbjct: 460 ANVKPNGVTFTNVFCACS 477
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 72/143 (50%), Gaps = 26/143 (18%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S C+ +R+L+ GR+V +I ++ ++ L N +L+MY KCGS+EDA+ + D M
Sbjct: 234 TMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAM 293
Query: 105 PQR-------------------------NVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
++ N + D+ +WNA+I+ NEA+ +F
Sbjct: 294 EEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFH 353
Query: 140 EMR-DRELIPDGLTVRSLLCACT 161
E++ + + + +T+ S L AC
Sbjct: 354 ELQLQKNMKLNQITLVSTLSACA 376
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ LI + + SL LG+ +H + S DV + N +++ Y CG L+ A V +
Sbjct: 133 TFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTI 192
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+++V+ SWN++I G + ++A+ LF +M ++ +T+ +L AC
Sbjct: 193 KEKDVV------SWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIR 246
Query: 165 NVLY 168
N+ +
Sbjct: 247 NLEF 250
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSK--SQPDVVLQNYILNMYGKCGSLEDARVVS 101
S + LI C SLR L ++ H H++ + S P + + + SLE AR V
Sbjct: 31 SRHISLIERCVSLRQL---KQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVF 87
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSLLCAC 160
DE+P+ P+ +WN +I AS + ++ F +M + + P+ T L+ A
Sbjct: 88 DEIPK------PNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAA 141
Query: 161 TSPSNV 166
S++
Sbjct: 142 AEVSSL 147
>sp|Q9LNP2|PPR47_ARATH Putative pentatricopeptide repeat-containing protein At1g17630
OS=Arabidopsis thaliana GN=PCMP-E72 PE=3 SV=1
Length = 731
Score = 90.1 bits (222), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T C++S C+ L +L LGR++H H++ + ++++QN ++NMY KCG L + +V +
Sbjct: 436 TICCILSICAELPALNLGREIHGHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVFE-- 493
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
I DL SWN+II G A +A+S+F M PDG+ + ++L AC+
Sbjct: 494 ----AIRDKDLISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAG 549
Query: 165 NV 166
V
Sbjct: 550 LV 551
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ + L F ++ + N + A S C+ L +L + KVH +++ + + +N
Sbjct: 275 FEDVLKYFHLMRMSGN-AVSGEALAVFFSVCAELEALSIAEKVHGYVIKGGFEEYLPSRN 333
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++++YGK G ++DA + + I + + SWN++I +EA+SLFSE+
Sbjct: 334 ALIHVYGKQGKVKDAEHLFRQ------IRNKGIESWNSLITSFVDAGKLDEALSLFSELE 387
Query: 143 D 143
+
Sbjct: 388 E 388
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ C L L R H ++ + ++ + N +L +Y K G + DA + EMP RN
Sbjct: 164 ILRACRYLGRFGLCRAFHTQVIQIGLKENLHVVNELLTLYPKAGRMGDAYNLFVEMPVRN 223
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ SWN +I G + + A+ +F M+ E PD +T S+L +C S
Sbjct: 224 RM------SWNVMIKGFSQEYDCESAVKIFEWMQREEFKPDEVTWTSVL-SCHS 270
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 63 RKVHDHILSSKSQPDVVLQNY-----ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
R+VH +L S D + ++ ++++Y + G L DAR V + + +++ DL
Sbjct: 73 RQVHAQVLLS----DFIFRSGSLAANLISVYARLGLLLDARNVFETV---SLVLLSDLRL 125
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
WN+I+ S A+ L+ MR R L DG + +L AC
Sbjct: 126 WNSILKANVSHGLYENALELYRGMRQRGLTGDGYILPLILRAC 168
>sp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protein At3g14330
OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2
Length = 710
Score = 89.0 bits (219), Expect = 1e-17, Method: Composition-based stats.
Identities = 45/118 (38%), Positives = 70/118 (59%), Gaps = 6/118 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T ++ CS + +L G+++H IL SK +PDV L N +++MYGKCG +E +R V D
Sbjct: 338 ATLTTILPACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFD- 396
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
V+ + DLASWN ++ A N E ++LF M + + PDG+T +LL C+
Sbjct: 397 -----VMLTKDLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCS 449
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 72/129 (55%), Gaps = 8/129 (6%)
Query: 41 IRPSTYACLIS--TCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I P ++ ++ C L+ L++GR +H I+ K + D V+ N +L +Y + G +DAR
Sbjct: 232 IEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDAR 291
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V D M +RNV+ +WN++I+ ++ +E +LF +M++ + T+ ++L
Sbjct: 292 KVFDGMSERNVV------TWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILP 345
Query: 159 ACTSPSNVL 167
AC+ + +L
Sbjct: 346 ACSRVAALL 354
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 35 NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSL 94
NN + R P + LI+ S R L L RK+ D + S + V + Y + GS
Sbjct: 159 NNPSLRHNPKLLSKLITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIG-YSRNGSP 217
Query: 95 EDARVVSDEM 104
DA +V +M
Sbjct: 218 RDALIVYVDM 227
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 88.6 bits (218), Expect = 2e-17, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
YN+AL FD + + + T +I C+ L +L G+ VH +IL V+LQ
Sbjct: 221 YNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQT 280
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCGS+ DA V R ++ D WNAII G+AS E++ LF +MR
Sbjct: 281 SLIDMYAKCGSIGDAWSVF----YRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMR 336
Query: 143 DRELIPDGLTVRSLLCACT 161
+ ++ PD +T LL AC+
Sbjct: 337 ESKIDPDEITFLCLLAACS 355
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY L+ + S L + +LG +H ++ S + D+ + N +++MYG AR + DEM
Sbjct: 110 TYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEM 169
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
P +N L +WN+I+ A + A +F EM +R+++
Sbjct: 170 PHKN------LVTWNSILDAYAKSGDVVSARLVFDEMSERDVV 206
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165
+ P WN +I G ++ N +++S++ +M L+PD +T L+ + + SN
Sbjct: 68 LSDPPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSN 123
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 10/143 (6%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
EAL+ L F Y L++ C R+L+ G++VH H++ ++ P L+
Sbjct: 37 QEALLEMAMLGPEMGFH----GYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTR 92
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+L YGKC LEDAR V DEMP++NV+ SW A+I+ + +++EA+++F+EM
Sbjct: 93 LLIFYGKCDCLEDARKVLDEMPEKNVV------SWTAMISRYSQTGHSSEALTVFAEMMR 146
Query: 144 RELIPDGLTVRSLLCACTSPSNV 166
+ P+ T ++L +C S +
Sbjct: 147 SDGKPNEFTFATVLTSCIRASGL 169
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 12/144 (8%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
L EAL F L + + P+ TYA L++ S L L G++ H H+L +
Sbjct: 233 GLDEEALEMFHRLHSEG---MSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYA 289
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
VLQN +++MY KCG+L AR + D MP+R I SWNA++ G + E + LF
Sbjct: 290 VLQNSLIDMYSKCGNLSYARRLFDNMPERTAI------SWNAMLVGYSKHGLGREVLELF 343
Query: 139 SEMRDRELI-PDGLTVRSLLCACT 161
MRD + + PD +T+ ++L C+
Sbjct: 344 RLMRDEKRVKPDAVTLLAVLSGCS 367
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 11/141 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+EAL F + + +P+ T+A ++++C L LG+++H I+ + +
Sbjct: 135 SEALTVFAEMMRSDG---KPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVG 191
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+ +L+MY K G +++AR + + +P+R+V+ S AIIAG A EA+ +F +
Sbjct: 192 SSLLDMYAKAGQIKEAREIFECLPERDVV------SCTAIIAGYAQLGLDEEALEMFHRL 245
Query: 142 RDRELIPDGLTVRSLLCACTS 162
+ P+ +T SLL A +
Sbjct: 246 HSEGMSPNYVTYASLLTALSG 266
>sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2
SV=1
Length = 866
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 78/141 (55%), Gaps = 6/141 (4%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
Q ++EA+ + + + T+ C++ TC + L G++VH H++ + D+
Sbjct: 173 QGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDID 232
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+ N ++ MY KCG ++ AR++ D MP+R++I SWNA+I+G +E + LF
Sbjct: 233 VVNALITMYVKCGDVKSARLLFDRMPRRDII------SWNAMISGYFENGMCHEGLELFF 286
Query: 140 EMRDRELIPDGLTVRSLLCAC 160
MR + PD +T+ S++ AC
Sbjct: 287 AMRGLSVDPDLMTLTSVISAC 307
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
+L G+++H H+L + D L N +L+MY +CG + A Q N + D+ S
Sbjct: 513 ALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTA------WSQFNS-QKKDVTS 565
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
WN ++ G + + + LF M + PD +T SLLC C+ V
Sbjct: 566 WNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMV 614
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100
+ + L+ C R+ + G KV+ LSS S V L N L M+ + G+L DA V
Sbjct: 92 VDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAFLAMFVRFGNLVDAWYV 151
Query: 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+M +RN L SWN ++ G A +EAM L+ M
Sbjct: 152 FGKMSERN------LFSWNVLVGGYAKQGYFDEAMCLYHRM 186
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T +IS C L +LGR +H +++++ D+ + N + MY GS +A + M
Sbjct: 299 TLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRM 358
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
E D+ SW +I+G ++A+ + M + PD +TV ++L AC +
Sbjct: 359 ------ERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLG 412
Query: 165 NV 166
++
Sbjct: 413 DL 414
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
++P T A ++S C++L L G ++H + ++ V++ N ++NMY KC ++ A
Sbjct: 394 VKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKAL 453
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+ +P++NVI SW +IIAG+ + EA+ +M+
Sbjct: 454 DIFHNIPRKNVI------SWTSIIAGLRLNNRCFEALIFLRQMK 491
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 72/128 (56%), Gaps = 8/128 (6%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ PS T+ +I +C+ L +L++G+ VH H + S D +Q ++ Y KCG +E AR
Sbjct: 103 VSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGAR 162
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V D MP+++++ +WN++++G A+EA+ +F +MR+ PD T SLL
Sbjct: 163 QVFDRMPEKSIV------AWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLS 216
Query: 159 ACTSPSNV 166
AC V
Sbjct: 217 ACAQTGAV 224
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 8/147 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L +EA+ F + + F +T+ L+S C+ ++ LG VH +I+S +V L
Sbjct: 187 GLADEAIQVF-YQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKL 245
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
++N+Y +CG + AR V D+M + NV A+W A+I+ + +A+ LF++
Sbjct: 246 GTALINLYSRCGDVGKAREVFDKMKETNV------AAWTAMISAYGTHGYGQQAVELFNK 299
Query: 141 MRDR-ELIPDGLTVRSLLCACTSPSNV 166
M D IP+ +T ++L AC V
Sbjct: 300 MEDDCGPIPNNVTFVAVLSACAHAGLV 326
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 87.4 bits (215), Expect = 3e-17, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 7/143 (4%)
Query: 20 QNLY-NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
+N Y NEAL F+ L F T AC++ C+SL + GR++H +I+ + D
Sbjct: 475 KNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR 534
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N +++MY KCG+L A ++ D+ I S DL SW +IAG EA++LF
Sbjct: 535 HVANSLVDMYAKCGALLLAHMLFDD------IASKDLVSWTVMIAGYGMHGFGKEAIALF 588
Query: 139 SEMRDRELIPDGLTVRSLLCACT 161
++MR + D ++ SLL AC+
Sbjct: 589 NQMRQAGIEADEISFVSLLYACS 611
Score = 81.3 bits (199), Expect = 3e-15, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 81/148 (54%), Gaps = 12/148 (8%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+ L EA+ F+ ++ I P Y +++ C+ R L G++VH+ I + D
Sbjct: 375 EGLAGEAVKLFEEMEEEG---ISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFD 431
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+ + N +++MY KCGS+++A +V EM +++I SWN II G + ANEA+SL
Sbjct: 432 IFVSNALMDMYAKCGSMQEAELVFSEMRVKDII------SWNTIIGGYSKNCYANEALSL 485
Query: 138 FS-EMRDRELIPDGLTVRSLLCACTSPS 164
F+ + ++ PD TV +L AC S S
Sbjct: 486 FNLLLEEKRFSPDERTVACVLPACASLS 513
Score = 69.7 bits (169), Expect = 9e-12, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
+ I +T + + C+ R + LGR VH + + + N +L+MY KCG L+
Sbjct: 290 SGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDS 349
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
A+ V EM R+V+ S+ ++IAG A A EA+ LF EM + + PD TV ++
Sbjct: 350 AKAVFREMSDRSVV------SYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAV 403
Query: 157 LCAC 160
L C
Sbjct: 404 LNCC 407
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++C+ + SSLRS+ G ++H IL S + N ++ Y K ++ AR V DEM
Sbjct: 197 TFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEM 256
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+R+VI SWN+II G S A + +S+F +M + D T+ S+ C
Sbjct: 257 TERDVI------SWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGC 306
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 19/163 (11%)
Query: 2 IRNLKTQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQL 61
+ + TQLR F S ++N A L + + I P T ++ C+ +SL+
Sbjct: 61 VTDANTQLR-RFCESGNLEN-------AVKLLCVSGKWDIDPRTLCSVLQLCADSKSLKD 112
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
G++V + I + D L + + MY CG L++A V DE+ + WN +
Sbjct: 113 GKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKAL------FWNIL 166
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+ +A + + ++ LF +M + G+ + S +C S S
Sbjct: 167 MNELAKSGDFSGSIGLFKKM-----MSSGVEMDSYTFSCVSKS 204
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 87.4 bits (215), Expect = 3e-17, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 8/137 (5%)
Query: 27 LVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
L A D +RPS + ++S C++L SLQ GR+VH H++ + DV + + +
Sbjct: 313 LEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVL 372
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+ MY KCG L A++V D +++I WN+II+G AS EA+ +F EM
Sbjct: 373 MTMYVKCGELVKAKLVFDRFSSKDII------MWNSIISGYASHGLGEEALKIFHEMPSS 426
Query: 145 ELIPDGLTVRSLLCACT 161
+P+ +T+ ++L AC+
Sbjct: 427 GTMPNKVTLIAILTACS 443
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 26/154 (16%)
Query: 2 IRNLKTQLRFTFYNSQPIQNLY-----------NEALVAFDFLQNNTNFRIRPSTYACLI 50
++ LK LR T+ S + + NEA FD LQ F+ S + ++
Sbjct: 1 MKRLKLILRRTYLTSTGVNCSFEISRLSRIGKINEARKFFDSLQ----FKAIGS-WNSIV 55
Query: 51 STCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI 110
S S + R++ D + S+ +VV N +++ Y K + +AR V + MP+RNV+
Sbjct: 56 SGYFSNGLPKEARQLFDEM----SERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVV 111
Query: 111 ESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
SW A++ G EA SLF M +R
Sbjct: 112 ------SWTAMVKGYMQEGMVGEAESLFWRMPER 139
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V+ N ++ +G+ G + AR V D M R D A+W +I EA+ L
Sbjct: 265 VIACNAMIVGFGEVGEISKARRVFDLMEDR------DNATWRGMIKAYERKGFELEALDL 318
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
F++M+ + + P ++ S+L C + +++ Y
Sbjct: 319 FAQMQKQGVRPSFPSLISILSVCATLASLQY 349
Score = 37.7 bits (86), Expect = 0.036, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N I++ Y G ++AR + DEM +RNV+ SWN +++G EA ++F M
Sbjct: 52 NSIVSGYFSNGLPKEARQLFDEMSERNVV------SWNGLVSGYIKNRMIVEARNVFELM 105
Query: 142 RDRELI 147
+R ++
Sbjct: 106 PERNVV 111
Score = 35.8 bits (81), Expect = 0.15, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
RK++D + DVV ++ + G +++AR++ DEM +RNV+ +W +
Sbjct: 160 ARKLYDMM----PVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVV------TWTTM 209
Query: 122 IAGVASPSNANEAMSLFSEMRDR 144
I G + + A LF M ++
Sbjct: 210 ITGYRQNNRVDVARKLFEVMPEK 232
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
G ++ AR + D MP ++V+ S ++ I G+ +EA +F EMR+R ++
Sbjct: 155 GRIDKARKLYDMMPVKDVVASTNM------IGGLCREGRVDEARLIFDEMRERNVV 204
Score = 33.5 bits (75), Expect = 0.70, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 90 KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
+ G + +AR D + + + SWN+I++G S EA LF EM +R ++
Sbjct: 29 RIGKINEARKFFDSLQFKAI------GSWNSIVSGYFSNGLPKEARQLFDEMSERNVV 80
>sp|Q9LND4|PPR14_ARATH Pentatricopeptide repeat-containing protein At1g06140,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2
SV=1
Length = 558
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 81/143 (56%), Gaps = 8/143 (5%)
Query: 26 ALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
A+ AFD + I P+ T A ++ +CSSL SL+ G+ VH +++ + + D V
Sbjct: 293 AVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTS 352
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++MY +CG+++ AR V D MP+RNVI SW+++I EA+ F +M+
Sbjct: 353 FIDMYARCGNIQMARTVFDMMPERNVI------SWSSMINAFGINGLFEEALDCFHKMKS 406
Query: 144 RELIPDGLTVRSLLCACTSPSNV 166
+ ++P+ +T SLL AC+ NV
Sbjct: 407 QNVVPNSVTFVSLLSACSHSGNV 429
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 7/131 (5%)
Query: 33 LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHD-HILSSKSQPDVVLQNYILNMYGKC 91
L +T + T CL+ C ++ + ++G+ VH I S LQ I++MY KC
Sbjct: 200 LMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKC 259
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL 151
L++AR + + RNV+ W +I+G A A EA LF +M ++P+
Sbjct: 260 RLLDNARKLFETSVDRNVV------MWTTLISGFAKCERAVEAFDLFRQMLRESILPNQC 313
Query: 152 TVRSLLCACTS 162
T+ ++L +C+S
Sbjct: 314 TLAAILVSCSS 324
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109
I C L L+ G +H + + D + ++ MY + G++E A+ V DE+P RN
Sbjct: 116 IKACVGLGLLENGILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNS 175
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+ W ++ G S E LF MRD L D LT+ L+ AC
Sbjct: 176 V------LWGVLMKGYLKYSKDPEVFRLFCLMRDTGLALDALTLICLVKAC 220
>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680
OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
Length = 727
Score = 87.0 bits (214), Expect = 5e-17, Method: Composition-based stats.
Identities = 49/144 (34%), Positives = 81/144 (56%), Gaps = 8/144 (5%)
Query: 19 IQNLYNE-ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+QN NE AL+ + ++ P T A ++ CSSL +L+LG++VH H + +
Sbjct: 399 VQNSDNEEALILYRRMKTAGIIPNDP-TMASVLKACSSLATLELGKQVHGHTIKHGFGLE 457
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
V + + + MY KCGSLED +V P ++V+ SWNA+I+G++ +EA+ L
Sbjct: 458 VPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVV------SWNAMISGLSHNGQGDEALEL 511
Query: 138 FSEMRDRELIPDGLTVRSLLCACT 161
F EM + PD +T +++ AC+
Sbjct: 512 FEEMLAEGMEPDDVTFVNIISACS 535
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 73/140 (52%), Gaps = 8/140 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
E+L A + I+PS Y + ++ CS + L+ G+++H +L + +
Sbjct: 302 ESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATT 361
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY K G L DAR D + +R D+A W ++I+G S+ EA+ L+ M+
Sbjct: 362 ALVDMYAKAGCLADARKGFDCLQER------DVALWTSLISGYVQNSDNEEALILYRRMK 415
Query: 143 DRELIPDGLTVRSLLCACTS 162
+IP+ T+ S+L AC+S
Sbjct: 416 TAGIIPNDPTMASVLKACSS 435
Score = 60.5 bits (145), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 54 SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESP 113
S R+L GR VH I+ + + + N ++N Y KCG L A + N I
Sbjct: 25 SQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIF------NAIICK 78
Query: 114 DLASWNAIIAGVASP---SNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
D+ SWN++I G + S++ M LF EMR ++++P+ T+ + A +S
Sbjct: 79 DVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESS 130
Score = 57.8 bits (138), Expect = 4e-08, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 10/147 (6%)
Query: 25 EALVAFD-FLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
EA+ F+ FL+ + ++S+ ++ + LGR++H + + V L N
Sbjct: 202 EAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNA 261
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++ MY KC SL +A + D RN I +W+A++ G + + EA+ LFS M
Sbjct: 262 LVTMYSKCESLNEACKMFDSSGDRNSI------TWSAMVTGYSQNGESLEAVKLFSRMFS 315
Query: 144 RELIPDGLTVRSLLCACTSPSNVLYLD 170
+ P T+ +L AC S++ YL+
Sbjct: 316 AGIKPSEYTIVGVLNAC---SDICYLE 339
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 41 IRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I P+ Y A + SSL+S +GR+ H ++ S D+ + ++ MY K G +ED
Sbjct: 114 ILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGL 173
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE-MRDRE 145
V MP+RN +W+ +++G A+ EA+ +F+ +R++E
Sbjct: 174 KVFAYMPERNTY------TWSTMVSGYATRGRVEEAIKVFNLFLREKE 215
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 88/157 (56%), Gaps = 8/157 (5%)
Query: 6 KTQLRFTFYNSQPIQ-NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRK 64
+T + +T S +Q L+ L F ++ +N R ST+A ++ +S SL LG++
Sbjct: 415 RTTVSWTALISGYVQKGLHGAGLKLFTKMRG-SNLRADQSTFATVLKASASFASLLLGKQ 473
Query: 65 VHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124
+H I+ S + +V + +++MY KCGS++DA V +EMP RN + SWNA+I+
Sbjct: 474 LHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAV------SWNALISA 527
Query: 125 VASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
A + A+ F++M + L PD +++ +L AC+
Sbjct: 528 HADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACS 564
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 11/164 (6%)
Query: 8 QLRFTFYN----SQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGR 63
+L F YN S + Y +L F +Q F R +A ++S ++L SLQ+GR
Sbjct: 313 ELDFVSYNVVISSYSQADQYEASLHFFREMQC-MGFDRRNFPFATMLSIAANLSSLQMGR 371
Query: 64 KVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIA 123
++H L + + + + N +++MY KC E+A ++ +PQR + SW A+I+
Sbjct: 372 QLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTV------SWTALIS 425
Query: 124 GVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
G + LF++MR L D T ++L A S +++L
Sbjct: 426 GYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLL 469
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
LY E++ F ++ + + +PS T++ ++ L LG+++H +++ D
Sbjct: 229 GLYTESIHLFLKMRQSGH---QPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDA 285
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N IL+ Y K + + R++ DEMP+ D S+N +I+ + ++ F
Sbjct: 286 SVGNQILDFYSKHDRVLETRMLFDEMPEL------DFVSYNVVISSYSQADQYEASLHFF 339
Query: 139 SEMR----DRELIP 148
EM+ DR P
Sbjct: 340 REMQCMGFDRRNFP 353
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
RKV+D + + V N +++ + K G + AR + D MP R V+ +W +
Sbjct: 67 ARKVYDEM----PHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVV------TWTIL 116
Query: 122 IAGVASPSNANEAMSLFSEM--RDRELIPDGLTVRSLLCAC 160
+ A S+ +EA LF +M +PD +T +LL C
Sbjct: 117 MGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGC 157
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
R+V I+ + D N+I+ + G + AR V DEMP +N + S N +I
Sbjct: 33 RRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTV------STNTMI 86
Query: 123 AGVASPSNANEAMSLFSEMRDRELI 147
+G + + A LF M DR ++
Sbjct: 87 SGHVKTGDVSSARDLFDAMPDRTVV 111
>sp|Q1PFQ9|PPR62_ARATH Pentatricopeptide repeat-containing protein At1g28690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E34 PE=2
SV=2
Length = 520
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 6/125 (4%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
F ST+A +I CS L S ++G++VH I+ S + + + +L+MY KCG + D
Sbjct: 267 AGFHPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGIND 326
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156
AR V D+M ++NV SW ++I G N EA+ LF+ M++ + P+ +T
Sbjct: 327 ARRVFDQMQEKNVF------SWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGA 380
Query: 157 LCACT 161
L AC+
Sbjct: 381 LSACS 385
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
+ G+K+H I+ + QPD+ + +L ++ KCG L AR V DE+P+ P L+++N
Sbjct: 51 KAGKKIHADIIKTGFQPDLNISIKLLILHLKCGCLSYARQVFDELPK------PTLSAYN 104
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYL 169
+I+G E + L M DG T+ +L A S + + L
Sbjct: 105 YMISGYLKHGLVKELLLLVQRMSYSGEKADGYTLSMVLKASNSRGSTMIL 154
>sp|Q0WNP3|PP319_ARATH Pentatricopeptide repeat-containing protein At4g18520
OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1
Length = 617
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 67/123 (54%), Gaps = 6/123 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ CS ++L+ GR+VH ++ + DV + +++MY KCG + D R V D M
Sbjct: 286 TVCSILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGM 345
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
RN + +W +IIA A EA+SLF M+ R LI + LTV S+L AC S
Sbjct: 346 SNRNTV------TWTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVG 399
Query: 165 NVL 167
+L
Sbjct: 400 ALL 402
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 6/123 (4%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++ C S+ +L LG+++H I+ + + +V + + ++ +Y KCG DA V ++
Sbjct: 387 TVVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQL 446
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
P R+V+ SW A+I+G +S + +EA+ EM + P+ T S L AC +
Sbjct: 447 PSRDVV------SWTAMISGCSSLGHESEALDFLKEMIQEGVEPNPFTYSSALKACANSE 500
Query: 165 NVL 167
++L
Sbjct: 501 SLL 503
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 75/142 (52%), Gaps = 9/142 (6%)
Query: 21 NLYNEALVAF-DFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79
L +EA F D++++ F + CL++ CS +LGR+VH +++ +++
Sbjct: 162 GLEDEAFALFEDYVKHGIRF-TNERMFVCLLNLCSRRAEFELGRQVHGNMVKV-GVGNLI 219
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
+++ ++ Y +CG L A D M +++VI SW A+I+ + + +A+ +F
Sbjct: 220 VESSLVYFYAQCGELTSALRAFDMMEEKDVI------SWTAVISACSRKGHGIKAIGMFI 273
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
M + +P+ TV S+L AC+
Sbjct: 274 GMLNHWFLPNEFTVCSILKACS 295
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A DFL+ + P+ TY+ + C++ SL +GR +H + + +V + + +++
Sbjct: 470 ALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIH 529
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY KCG + +A V D MP++N L SW A+I G A EA+ L M
Sbjct: 530 MYAKCGFVSEAFRVFDSMPEKN------LVSWKAMIMGYARNGFCREALKLMYRMEAEGF 583
Query: 147 IPDGLTVRSLLCAC 160
D ++L C
Sbjct: 584 EVDDYIFATILSTC 597
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 35 NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSL 94
++++F YA L S ++L +++H L + N +++ + G L
Sbjct: 74 DSSSFDSERVDYALLAEWLQSSNGMRLIKRIHAMALKCFDDQVIYFGNNLISSCVRLGDL 133
Query: 95 EDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
AR V D MP++N + +W A+I G +EA +LF +
Sbjct: 134 VYARKVFDSMPEKNTV------TWTAMIDGYLKYGLEDEAFALFED 173
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 85.5 bits (210), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/116 (34%), Positives = 67/116 (57%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY LI +++ ++LG +H ++ S + +QN +L++Y CG + A V D+M
Sbjct: 123 TYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKM 182
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
P++ DL +WN++I G A EA++L++EM + + PDG T+ SLL AC
Sbjct: 183 PEK------DLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSAC 232
Score = 70.9 bits (172), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 69/124 (55%), Gaps = 9/124 (7%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
I+P T L+S C+ + +L LG++VH +++ ++ N +L++Y +CG +E+A+
Sbjct: 218 IKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAK 277
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE-LIPDGLTVRSLL 157
+ DEM +N + SW ++I G+A EA+ LF M E L+P +T +L
Sbjct: 278 TLFDEMVDKNSV------SWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGIL 331
Query: 158 CACT 161
AC+
Sbjct: 332 YACS 335
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 110 IESP-DLASWNAIIAGVASPSNANEAMSLFSEMRDRELI-PDGLTVRSLLCACTSPSNV 166
IE P ++ WN +I G A N+ A SL+ EMR L+ PD T L+ A T+ ++V
Sbjct: 79 IEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADV 137
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 67/113 (59%), Gaps = 6/113 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ C +L LG+K+H +I K P+++L+N +++MY KCG LE AR V + M R+
Sbjct: 315 VLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRD 374
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
V+ SW A+I+ +A++LFS+++D L+PD + + L AC+
Sbjct: 375 VV------SWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACS 421
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 9/151 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y E + F + N R T+ C++ CS ++ +GRK+H + +
Sbjct: 119 GFYGEGVKVFGTM-CGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFV 177
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MYGKCG L +AR+V DEM +R+V+ SWN+++ G A ++A+ + E
Sbjct: 178 GNGLVSMYGKCGFLSEARLVLDEMSRRDVV------SWNSLVVGYAQNQRFDDALEVCRE 231
Query: 141 MRDRELIPDGLTVRSLLCAC--TSPSNVLYL 169
M ++ D T+ SLL A T+ NV+Y+
Sbjct: 232 MESVKISHDAGTMASLLPAVSNTTTENVMYV 262
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++ T +R+L R VH I+ + + L ++ Y + AR V DE+P+RN
Sbjct: 48 VLDTYPDIRTL---RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERN 104
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167
VI N +I + E + +F M + PD T +L AC+ ++
Sbjct: 105 VI------IINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIV 157
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 79/139 (56%), Gaps = 8/139 (5%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLIS--TCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+ LV FD ++N+ + ++P CL++ C++L +L G++VHD I + + L N
Sbjct: 197 DVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSN 256
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY +CGS++ A V M +RNV+ SW A+I+G+A EA+ F+EM
Sbjct: 257 TLVSMYSRCGSMDKAYQVFYGMRERNVV------SWTALISGLAMNGFGKEAIEAFNEML 310
Query: 143 DRELIPDGLTVRSLLCACT 161
+ P+ T+ LL AC+
Sbjct: 311 KFGISPEEQTLTGLLSACS 329
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 9/139 (6%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
E F L+ N++ P + + + C L G ++H I S D +L +
Sbjct: 95 EGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTL 154
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR-- 142
+++Y C + DA V DE+P+R D SWN + + + + LF +M+
Sbjct: 155 MDLYSTCENSTDACKVFDEIPKR------DTVSWNVLFSCYLRNKRTRDVLVLFDKMKND 208
Query: 143 -DRELIPDGLTVRSLLCAC 160
D + PDG+T L AC
Sbjct: 209 VDGCVKPDGVTCLLALQAC 227
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 83.6 bits (205), Expect = 6e-16, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y L+ C+ + L GR VH HIL S + D+V+ N +LNMY KCGSLE+AR V ++MP
Sbjct: 63 YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP 122
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
QR D +W +I+G + +A+ F++M P+ T+ S++ A +
Sbjct: 123 QR------DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAA 173
Score = 76.6 bits (187), Expect = 8e-14, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 8/135 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A + Q RPS +YA L CSS L+ G+ VH +++ S + N +L+
Sbjct: 246 ALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLD 305
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
MY K GS+ DAR + D + +R+V+ SWN+++ A EA+ F EMR +
Sbjct: 306 MYAKSGSIHDARKIFDRLAKRDVV------SWNSLLTAYAQHGFGKEAVWWFEEMRRVGI 359
Query: 147 IPDGLTVRSLLCACT 161
P+ ++ S+L AC+
Sbjct: 360 RPNEISFLSVLTACS 374
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 8/136 (5%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86
A F F P+ T + +I ++ R G ++H + +V + + +L+
Sbjct: 145 ALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLD 204
Query: 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146
+Y + G ++DA++V D + RN + SWNA+IAG A S +A+ LF M
Sbjct: 205 LYTRYGLMDDAQLVFDALESRNDV------SWNALIAGHARRSGTEKALELFQGMLRDGF 258
Query: 147 IPDGLTVRSLLCACTS 162
P + SL AC+S
Sbjct: 259 RPSHFSYASLFGACSS 274
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 80/146 (54%), Gaps = 11/146 (7%)
Query: 23 YNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
Y EA+ F + I P T + +IS C+ L L++G++VH + L + DV +
Sbjct: 268 YREAIAVFYKMMEEG---IIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYI 324
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ +++MY KCGSLE A +V +P++N L WN+II G+A+ A EA+ +F++
Sbjct: 325 GSALVDMYSKCGSLERALLVFFNLPKKN------LFCWNSIIEGLAAHGFAQEALKMFAK 378
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M + P+ +T S+ ACT V
Sbjct: 379 MEMESVKPNAVTFVSVFTACTHAGLV 404
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 74 SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
S+ + N ++N Y G+LE A + ++MP +++I SW +I G + E
Sbjct: 217 SEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDII------SWTTMIKGYSQNKRYRE 270
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACT 161
A+++F +M + +IPD +T+ +++ AC
Sbjct: 271 AIAVFYKMMEEGIIPDEVTMSTVISACA 298
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+ PS TY+ L+ SS S + G + HI V +Q +++ Y G + +AR
Sbjct: 122 VSPSSYTYSSLVKA-SSFAS-RFGESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIREAR 179
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
V DEMP+R+ I +W +++ + + A SL ++M ++
Sbjct: 180 KVFDEMPERDDI------AWTTMVSAYRRVLDMDSANSLANQMSEK 219
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 83.6 bits (205), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/117 (34%), Positives = 72/117 (61%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S C L SL++G +++D + +++++N L+M+ KCG+ E ARV+ +EM
Sbjct: 212 TVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEM 271
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
QRNV+ SW+ +I G A ++ EA++LF+ M++ L P+ +T +L AC+
Sbjct: 272 KQRNVV------SWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACS 322
Score = 33.5 bits (75), Expect = 0.74, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 54 SSLRSLQLGRKVHDHILSSK-SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIES 112
SS + QL +K+H +L + S+ + +L + N+ G + AR V DEM
Sbjct: 20 SSSKPKQL-KKIHAIVLRTGFSEKNSLLTQLLENLV-VIGDMCYARQVFDEM------HK 71
Query: 113 PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
P + WN + G E++ L+ +MRD + PD T
Sbjct: 72 PRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFT 111
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 7/146 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
L +A+ F +Q + F P T C++S C+ L +L LG+ VHD + S+ + + +
Sbjct: 399 GLTEDAISLFREMQK-SEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYV 457
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
++ MY KCGS+ +AR + D M ++N + +WN +I+G EA+++F E
Sbjct: 458 STALIGMYAKCGSIAEARRLFDLMTKKNEV------TWNTMISGYGLHGQGQEALNIFYE 511
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M + + P +T +L AC+ V
Sbjct: 512 MLNSGITPTPVTFLCVLYACSHAGLV 537
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+ +L F L+ +T+ + STYA IS S R + GR +H + +++L +
Sbjct: 100 HSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSN 159
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
I+ MY K +EDAR V D MP+++ I WN +I+G E++ +F ++
Sbjct: 160 IVKMYFKFWRVEDARKVFDRMPEKDTI------LWNTMISGYRKNEMYVESIQVFRDL 211
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
R+R ST L+ L L +H + L S + + +Y K +E AR
Sbjct: 319 RLRSSTLVSLVPVSGHL---MLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARK 375
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ DE P+++ L SWNA+I+G +A+SLF EM+ E P+ +T+ +L A
Sbjct: 376 LFDESPEKS------LPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSA 429
Query: 160 C 160
C
Sbjct: 430 C 430
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 17/138 (12%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS---QPD 77
+Y E++ F L N + R+ +T ++ + L+ L+LG ++H L++K+ D
Sbjct: 199 EMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHS--LATKTGCYSHD 256
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
VL +I ++Y KCG ++ + E + PD+ ++NA+I G S ++SL
Sbjct: 257 YVLTGFI-SLYSKCGKIKMGSALFREFRK------PDIVAYNAMIHGYTSNGETELSLSL 309
Query: 138 FSEMRDRELIPDGLTVRS 155
F +EL+ G +RS
Sbjct: 310 F-----KELMLSGARLRS 322
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 83.6 bits (205), Expect = 6e-16, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 13/143 (9%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL+AF ++ + + R S++ C I CSSL + G++ H Q D+ + + +
Sbjct: 59 EALLAFSSMRKLSLYPTR-SSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSAL 117
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM--- 141
+ MY CG LEDAR V DE+P+RN++ SW ++I G NA +A+SLF ++
Sbjct: 118 IVMYSTCGKLEDARKVFDEIPKRNIV------SWTSMIRGYDLNGNALDAVSLFKDLLVD 171
Query: 142 ---RDRELIPDGLTVRSLLCACT 161
D + D + + S++ AC+
Sbjct: 172 ENDDDDAMFLDSMGLVSVISACS 194
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81
+ NEA F L N T + ++ S +L++G+ +HD ++ + DV++
Sbjct: 266 MSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVG 325
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
I++MY KCG +E AR D M +NV SW A+IAG +A +A+ LF M
Sbjct: 326 TSIIDMYCKCGRVETARKAFDRMKNKNV------RSWTAMIAGYGMHGHAAKALELFPAM 379
Query: 142 RDRELIPDGLTVRSLLCACT 161
D + P+ +T S+L AC+
Sbjct: 380 IDSGVRPNYITFVSVLAACS 399
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
++ D+ SWN++IA +A ++ EA+ FS MR L P + + AC+S
Sbjct: 36 VDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSS 88
Score = 37.7 bits (86), Expect = 0.037, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS--LEDARVVSDEMPQ 106
+IS CS + + L +H ++ V + N +L+ Y K G + AR + D++
Sbjct: 189 VISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVD 248
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSLLCACT 161
+ D S+N+I++ A +NEA +F + +++ + + +T+ ++L A +
Sbjct: 249 K------DRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVS 298
>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2
SV=1
Length = 1028
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 86/164 (52%), Gaps = 11/164 (6%)
Query: 6 KTQLRFTFYNSQPIQN-LYNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLG 62
K+ + +T S QN Y EAL + ++++ + P +T+ ++ CS L SL+ G
Sbjct: 695 KSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDG---VLPDQATFVTVLRVCSVLSSLREG 751
Query: 63 RKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
R +H I D + N +++MY KCG ++ + V DEM +R+ ++ SWN++I
Sbjct: 752 RAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRS-----NVVSWNSLI 806
Query: 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
G A A +A+ +F MR ++PD +T +L AC+ V
Sbjct: 807 NGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKV 850
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 6/127 (4%)
Query: 35 NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSL 94
++ + I T+ L+STC++ L++G + H I+ K ++ + N +++MY KCG+L
Sbjct: 420 KSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGAL 479
Query: 95 EDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVR 154
EDAR + + M R D +WN II N +EA LF M ++ DG +
Sbjct: 480 EDARQIFERMCDR------DNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLA 533
Query: 155 SLLCACT 161
S L ACT
Sbjct: 534 STLKACT 540
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 11/141 (7%)
Query: 29 AFDFLQNNTNFRIRPSTYACLIST---CSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
AFD + N S ACL ST C+ + L G++VH + D+ + ++
Sbjct: 513 AFDLFKR-MNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLI 571
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+MY KCG ++DAR V +P+ +V+ S NA+IAG S +N EA+ LF EM R
Sbjct: 572 DMYSKCGIIKDARKVFSSLPEWSVV------SMNALIAGY-SQNNLEEAVVLFQEMLTRG 624
Query: 146 LIPDGLTVRSLLCACTSPSNV 166
+ P +T +++ AC P ++
Sbjct: 625 VNPSEITFATIVEACHKPESL 645
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 8/141 (5%)
Query: 28 VAFDFLQN--NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
VA ++ N ++ + ST ++S + +L LG VH + ++ + + ++
Sbjct: 310 VAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLV 369
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+MY KC +E A V + + ++N + WNA+I G A +++ M LF +M+
Sbjct: 370 SMYSKCEKMEAAAKVFEALEEKNDV------FWNAMIRGYAHNGESHKVMELFMDMKSSG 423
Query: 146 LIPDGLTVRSLLCACTSPSNV 166
D T SLL C + ++
Sbjct: 424 YNIDDFTFTSLLSTCAASHDL 444
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ ++STC+ +++ GR++H ++ + + +++MY KC + DAR V +
Sbjct: 162 TFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFE-- 219
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
I P+ W + +G EA+ +F MRD PD L +++
Sbjct: 220 ----WIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVI 268
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 13/151 (8%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSK-SQP 76
QN EA+V F Q + PS T+A ++ C SL LG + H I S
Sbjct: 607 QNNLEEAVVLF---QEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSE 663
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPD-LASWNAIIAGVASPSNANEAM 135
L +L MY + +A + E+ SP + W +++G + EA+
Sbjct: 664 GEYLGISLLGMYMNSRGMTEACALFSELS------SPKSIVLWTGMMSGHSQNGFYEEAL 717
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+ EMR ++PD T ++L C+ S++
Sbjct: 718 KFYKEMRHDGVLPDQATFVTVLRVCSVLSSL 748
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 65 VHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124
V + + +PD + ++N Y + G L+DAR++ EM SPD+ +WN +I+G
Sbjct: 248 VFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMS------SPDVVAWNVMISG 301
Query: 125 VASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
A+ F MR + T+ S+L A +N+
Sbjct: 302 HGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANL 343
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
+L++G+ VH L + L N I+++Y KC VS Q + +E D+ +
Sbjct: 75 ALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQ------VSYAEKQFDFLE-KDVTA 127
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
WN++++ +S + + F + + ++ P+ T +L C +NV +
Sbjct: 128 WNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEF 178
>sp|Q9FLX6|PP430_ARATH Pentatricopeptide repeat-containing protein At5g52850,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H31 PE=2
SV=1
Length = 893
Score = 83.2 bits (204), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
IS ++L +L+ G+ +H + + S + N +++MY KCGSLEDA+ V +E
Sbjct: 534 FISASANLGALETGKHLHCYSVKSGFSGAASVLNSLVDMYSKCGSLEDAKKVFEE----- 588
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
I +PD+ SWN +++G+AS + A+S F EMR +E PD +T LL AC+
Sbjct: 589 -IATPDVVSWNGLVSGLASNGFISSALSAFEEMRMKETEPDSVTFLILLSACS 640
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 9/124 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS--LEDARVVSD 102
TY+ ++S CS++RSL G+++H + + + N +++MY KC + +E +RV
Sbjct: 327 TYSAILSLCSAVRSLDFGKQIHSQTIKVGFEDSTDVGNALVDMYMKCSASEVEASRVF-- 384
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ SP++ SW +I G+ + L EM RE+ P+ +T+ +L AC+
Sbjct: 385 -----GAMVSPNVVSWTTLILGLVDHGFVQDCFGLLMEMVKREVEPNVVTLSGVLRACSK 439
Query: 163 PSNV 166
+V
Sbjct: 440 LRHV 443
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ ++ +C+ LR + G +VH ++ + + + V+ + + ++Y KCG ++A
Sbjct: 126 TFSSVVRSCAGLRDISYGGRVHGSVIKTGFEGNSVVGSSLSDLYSKCGQFKEA------C 179
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
+ +++ D SW +I+ + EA+ +SEM + P+ T LL A
Sbjct: 180 ELFSSLQNADTISWTMMISSLVGARKWREALQFYSEMVKAGVPPNEFTFVKLLGA 234
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 54 SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA-RVVSDEMPQRNVIES 112
SS L+ G+ +H +I+ +VVL+ +++ Y + +EDA RV++ Q
Sbjct: 235 SSFLGLEFGKTIHSNIIVRGIPLNVVLKTSLVDFYSQFSKMEDAVRVLNSSGEQ------ 288
Query: 113 PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
D+ W ++++G A EA+ F EMR L P+ T ++L C++
Sbjct: 289 -DVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLQPNNFTYSAILSLCSA 337
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++S C S S ++G +H ++ ++ L N +L++Y K + +AR + DEM R
Sbjct: 30 ILSFCES-NSSRIGLHIHCPVIKFGLLENLDLCNNLLSLYLKTDGIWNARKLFDEMSHRT 88
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168
V +W +I+ A+SLF EM P+ T S++ +C ++ Y
Sbjct: 89 VF------AWTVMISAFTKSQEFASALSLFEEMMASGTHPNEFTFSSVVRSCAGLRDISY 142
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 82.8 bits (203), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TYA ++ TC++L S LG+++H ++ + Q DV + + +++MY KCG L D+R++ ++
Sbjct: 605 TYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKS 664
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+R D +WNA+I G A EA+ LF M + P+ +T S+L AC
Sbjct: 665 LRR------DFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACA 715
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 52 TCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIE 111
C+ ++ L G +++ + S DV + N ++MYGKC +L +A V DEM +R
Sbjct: 391 ACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRR---- 446
Query: 112 SPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
D SWNAIIA E + LF M + PD T S+L ACT S
Sbjct: 447 --DAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTGGS 497
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 75/141 (53%), Gaps = 7/141 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
NL + AL F +Q N + S YA ++ +C++L L+LG ++H H L S D ++
Sbjct: 260 NLLSLALKFFKEMQK-VNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIV 318
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+ L+MY KC +++DA+++ D E+ + S+NA+I G + + +A+ LF
Sbjct: 319 RTATLDMYAKCDNMQDAQILFDNS------ENLNRQSYNAMITGYSQEEHGFKALLLFHR 372
Query: 141 MRDRELIPDGLTVRSLLCACT 161
+ L D +++ + AC
Sbjct: 373 LMSSGLGFDEISLSGVFRACA 393
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 40 RIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
RI P T+ ++ C+ SL G ++H I+ S + + +++MY KCG +E+A
Sbjct: 478 RIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEA 536
Query: 98 RVVSDEMPQR-NVIESPD-------------LASWNAIIAGVASPSNANEAMSLFSEMRD 143
+ QR NV + + SWN+II+G + +A LF+ M +
Sbjct: 537 EKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMME 596
Query: 144 RELIPDGLTVRSLLCACT 161
+ PD T ++L C
Sbjct: 597 MGITPDKFTYATVLDTCA 614
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 20/145 (13%)
Query: 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFR--------------IRPSTYACLISTCSSLR 57
+F+N P++++ + + +LQN + + T+A ++ CS L
Sbjct: 135 SFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLE 194
Query: 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
LG ++H ++ DVV + +L+MY K ++ V +P++N + S
Sbjct: 195 DTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSV------S 248
Query: 118 WNAIIAGVASPSNANEAMSLFSEMR 142
W+AIIAG + + A+ F EM+
Sbjct: 249 WSAIIAGCVQNNLLSLALKFFKEMQ 273
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Query: 31 DFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90
DFL N N + + ++ + C+ +L+LG++ H H++ S +P + N +L +Y
Sbjct: 38 DFL-NQVN-SVSTTNFSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTN 95
Query: 91 CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
A +V D+MP R+V+ SWN +I G + ++ +A S F+ M R+++
Sbjct: 96 SRDFVSASMVFDKMPLRDVV------SWNKMINGYSKSNDMFKANSFFNMMPVRDVV 146
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 82.8 bits (203), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/122 (37%), Positives = 72/122 (59%), Gaps = 8/122 (6%)
Query: 41 IRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
IRP S + + CS L +LQLGR++H + S DV +++MY KCG L DA
Sbjct: 280 IRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAW 339
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
+ + M +++V+ +WNA+I+G A NA++A+ LF EM D ++ PD +T ++L
Sbjct: 340 KLFEVMKKKDVV------AWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLL 393
Query: 159 AC 160
AC
Sbjct: 394 AC 395
Score = 38.5 bits (88), Expect = 0.020, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+PD N +L+ Y + + E A+ D MP + D ASWN +I G A +A
Sbjct: 121 EPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFK------DAASWNTMITGYARRGEMEKA 174
Query: 135 MSLFSEMRDR 144
LF M ++
Sbjct: 175 RELFYSMMEK 184
Score = 35.8 bits (81), Expect = 0.14, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 26/122 (21%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIE----------------- 111
+ S + + V N +++ Y +CG LE A P R V+
Sbjct: 177 LFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELA 236
Query: 112 ---------SPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ +L +WNA+I+G S + + LF M + + P+ + S L C+
Sbjct: 237 EAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSE 296
Query: 163 PS 164
S
Sbjct: 297 LS 298
>sp|P0C7R0|PPR69_ARATH Pentatricopeptide repeat-containing protein At1g32415,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E56 PE=2
SV=1
Length = 761
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 90/161 (55%), Gaps = 14/161 (8%)
Query: 6 KTQLRFTFYNSQPIQN-LYNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLG 62
K + +T S +QN L+ EA L + ++P STY+ L+S+ + +L G
Sbjct: 429 KDGVTWTVMISGLVQNELFAEAA---SLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQG 485
Query: 63 RKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNA 120
+ +H I + + PD++LQN +++MY KCG++EDA + +M Q+ D SWN+
Sbjct: 486 KHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQK------DTVSWNS 539
Query: 121 IIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+I G++ A++A++LF EM D P+ +T +L AC+
Sbjct: 540 MIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSACS 580
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 56 LRSLQLGRKVH-----DHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI 110
LR L G VH D I S VV +L+ Y K G L++ARV+ + MP+RN++
Sbjct: 50 LRRLSEGGLVHARHLLDKIPQRGSINRVVYWTSLLSKYAKTGYLDEARVLFEVMPERNIV 109
Query: 111 ESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
NA++ G NEA +LF EM
Sbjct: 110 TC------NAMLTGYVKCRRMNEAWTLFREM 134
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128
+ S+ +VV ++ Y + G + +A + EMP+RN++ SW A+I+G A
Sbjct: 222 LFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIV------SWTAMISGFAWN 275
Query: 129 SNANEAMSLFSEM-RDRELI-PDGLTVRSLLCAC 160
EA+ LF EM +D + + P+G T+ SL AC
Sbjct: 276 ELYREALMLFLEMKKDVDAVSPNGETLISLAYAC 309
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134
+ +VV N ++ + G +E A+ V D MP R+V+ SWNA+I G EA
Sbjct: 166 ERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVV------SWNAMIKGYIENDGMEEA 219
Query: 135 MSLFSEMRDRELI 147
LF +M ++ ++
Sbjct: 220 KLLFGDMSEKNVV 232
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 28/164 (17%)
Query: 26 ALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSS-KSQPDVVLQN 82
A+ A D Q R+ P T A +IS C+SL ++++G++VH ++ + K + D++L N
Sbjct: 234 AVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSN 293
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESP-------------------------DLAS 117
++MY KC +++AR + D MP RNVI ++ S
Sbjct: 294 AFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVS 353
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
WNA+IAG EA+SLF ++ + P + ++L AC
Sbjct: 354 WNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACA 397
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 7/142 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
EAL F + F + ++A ++S CS L + G +VH I S DV + + +
Sbjct: 135 EALCYFAMMHKE-GFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSAL 193
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MY KCG++ DA+ V DEM RNV+ SWN++I A EA+ +F M +
Sbjct: 194 VDMYSKCGNVNDAQRVFDEMGDRNVV------SWNSLITCFEQNGPAVEALDVFQMMLES 247
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
+ PD +T+ S++ AC S S +
Sbjct: 248 RVEPDEVTLASVISACASLSAI 269
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 17/150 (11%)
Query: 25 EALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILS------SKSQP 76
EAL F L+ + + P+ Y A ++ C+ L L LG + H H+L S +
Sbjct: 369 EALSLFCLLKRES---VCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEED 425
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
D+ + N +++MY KCG +E+ +V +M +R D SWNA+I G A NEA+
Sbjct: 426 DIFVGNSLIDMYVKCGCVEEGYLVFRKMMER------DCVSWNAMIIGFAQNGYGNEALE 479
Query: 137 LFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
LF EM + PD +T+ +L AC V
Sbjct: 480 LFREMLESGEKPDHITMIGVLSACGHAGFV 509
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 62/104 (59%), Gaps = 9/104 (8%)
Query: 44 STYACLISTC--SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101
S +A L+ +C S L ++ + R VH ++ S ++ +QN +++ Y KCGSLED R V
Sbjct: 20 SPFAKLLDSCIKSKLSAIYV-RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVF 78
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
D+MPQRN+ +WN+++ G+ +EA SLF M +R+
Sbjct: 79 DKMPQRNIY------TWNSVVTGLTKLGFLDEADSLFRSMPERD 116
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILS---SKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
+ L++ C R++ LG+ V + +L S S P V+L N MY + G ED V
Sbjct: 564 WGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSN----MYAELGKWEDVMNVRK 619
Query: 103 EMPQRNVIESPDLASWNAI 121
M + V + P SW I
Sbjct: 620 SMRKEGVTKQPG-CSWIKI 637
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 10/139 (7%)
Query: 28 VAFDFLQ--NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
VA + + F +T ++ C+ L L+LG + H HI+ K D++L N ++
Sbjct: 243 VALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIV--KYDQDLILNNALV 300
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+MY KCGSLEDA V ++M +R+VI +W+ +I+G+A + EA+ LF M+
Sbjct: 301 DMYCKCGSLEDALRVFNQMKERDVI------TWSTMISGLAQNGYSQEALKLFERMKSSG 354
Query: 146 LIPDGLTVRSLLCACTSPS 164
P+ +T+ +L AC+
Sbjct: 355 TKPNYITIVGVLFACSHAG 373
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 7/144 (4%)
Query: 26 ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85
A+ A D LQ++ +TY+ LI C S R++ G + H+ + +P + L N ++
Sbjct: 45 AMKAMDSLQSH-GLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLI 103
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
NMY K L DA + D+MPQRNVI SW +I+ + +A+ L M
Sbjct: 104 NMYVKFNLLNDAHQLFDQMPQRNVI------SWTTMISAYSKCKIHQKALELLVLMLRDN 157
Query: 146 LIPDGLTVRSLLCACTSPSNVLYL 169
+ P+ T S+L +C S+V L
Sbjct: 158 VRPNVYTYSSVLRSCNGMSDVRML 181
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 11/124 (8%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP+ TY+ ++ +C+ + + R +H I+ + DV +++ +++++ K G EDA
Sbjct: 158 VRPNVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDAL 214
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158
V DEM + D WN+II G A S ++ A+ LF M+ I + T+ S+L
Sbjct: 215 SVFDEMV------TGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLR 268
Query: 159 ACTS 162
ACT
Sbjct: 269 ACTG 272
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ +IS + Q K+ + + SS ++P+ + +L G LED M
Sbjct: 326 TWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSM 385
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
+ I+ P + +I + ++A+ L +EM E PD +T R+LL AC
Sbjct: 386 KKLYGID-PVREHYGCMIDLLGKAGKLDDAVKLLNEM---ECEPDAVTWRTLLGACRVQR 441
Query: 165 NVL 167
N++
Sbjct: 442 NMV 444
>sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3
SV=1
Length = 822
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 71/120 (59%), Gaps = 6/120 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ + C+SL S+ LG +VH + + + V + N +++MY KCG ++ A+ V +EM
Sbjct: 451 TFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEM 510
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
E+ D+ASWNA+I+G ++ +A+ + M+DR+ P+GLT +L C++
Sbjct: 511 ------ETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAG 564
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ + L + + VH IL + D + +L +Y + G + DA V +EM
Sbjct: 249 TFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEM 308
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P+ +V+ W+ +IA NEA+ LF MR+ ++P+ T+ S+L C
Sbjct: 309 PKNDVV------PWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCA 359
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 73/166 (43%), Gaps = 20/166 (12%)
Query: 11 FTFYNSQPIQNLYNEALVAFDFLQN-------NTNFRIRPS-------TYACLISTCSSL 56
F +N P ++ + + F QN + R+R + T + +++ C+
Sbjct: 302 FKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIG 361
Query: 57 RSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLA 116
+ LG ++H ++ D+ + N ++++Y KC ++ A + E+ +N +
Sbjct: 362 KCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEV------ 415
Query: 117 SWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
SWN +I G + +A S+F E ++ +T S L AC S
Sbjct: 416 SWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACAS 461
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
Y ++ C + +H IL S D+ N +LN Y K G +DA + DEM
Sbjct: 51 AYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEM 110
Query: 105 PQRNVIESPDLA 116
P+RN + LA
Sbjct: 111 PERNNVSFVTLA 122
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 6/120 (5%)
Query: 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99
+ P + + SL ++ +H I+ + + ++N Y CGS++ AR
Sbjct: 143 ELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSART 202
Query: 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159
V + I D+ W I++ +++ L S MR +P+ T + L A
Sbjct: 203 VFEG------ILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKA 256
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 81.3 bits (199), Expect = 3e-15, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 85/146 (58%), Gaps = 12/146 (8%)
Query: 19 IQN-LYNEALVAFDFLQNNTNFRIRPST--YACLISTCSSLRSLQLGRKVHDHILSSKSQ 75
+QN YNEAL F + +++P ++ +I C+ L +L LG+++H ++L
Sbjct: 319 VQNGRYNEALRLF---RQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFG 375
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
++ + + +++MY KCG+++ AR + D M NV+ D SW AII G A + +EA+
Sbjct: 376 SNIFIASALVDMYSKCGNIKAARKIFDRM---NVL---DEVSWTAIIMGHALHGHGHEAV 429
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACT 161
SLF EM+ + + P+ + ++L AC+
Sbjct: 430 SLFEEMKRQGVKPNQVAFVAVLTACS 455
Score = 58.2 bits (139), Expect = 3e-08, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 37/171 (21%)
Query: 20 QNLYNEALVAFDFLQNN---TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76
Q+L+++AL +F ++ + + + PS ++ +C+ + L+ G VH I+
Sbjct: 83 QSLFSKALASFVEMRASGRCPDHNVFPS----VLKSCTMMMDLRFGESVHGFIVRLGMDC 138
Query: 77 DVVLQNYILNMYGKC---GSLEDARVVSDEMPQRN------------------------- 108
D+ N ++NMY K GS V DEMPQR
Sbjct: 139 DLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRV 198
Query: 109 --VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
V+ D+ S+N IIAG A +A+ + EM +L PD T+ S+L
Sbjct: 199 FEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVL 249
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
G+++H +++ DV + + +++MY K +ED+ V + R+ I SWN++
Sbjct: 261 GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGI------SWNSL 314
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
+AG NEA+ LF +M ++ P + S++ AC
Sbjct: 315 VAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPAC 353
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
++SP + +W ++I S ++A++ F EMR PD S+L +CT
Sbjct: 65 LKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCT 116
>sp|Q9LR69|PPR8_ARATH Pentatricopeptide repeat-containing protein At1g03540
OS=Arabidopsis thaliana GN=PCMP-E4 PE=2 SV=1
Length = 609
Score = 81.3 bits (199), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 80/139 (57%), Gaps = 8/139 (5%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+LY EAL F + ST+ +++ C +LR L+ G+++H ++++ +VV+
Sbjct: 243 DLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVV 302
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
++ +L+MYGKCGS+ +AR V + M ++N + SW+A++ G +A+ +F E
Sbjct: 303 ESSLLDMYGKCGSVREARQVFNGMSKKNSV------SWSALLGGYCQNGEHEKAIEIFRE 356
Query: 141 MRDRELIPDGLTVRSLLCA 159
M +++L G +++ CA
Sbjct: 357 MEEKDLYCFGTVLKA--CA 373
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 68/115 (59%), Gaps = 6/115 (5%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+ ++ C+ L +++LG+++H + +V++++ ++++YGK G ++ A V +M
Sbjct: 365 FGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDSASRVYSKMS 424
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
RN+I +WNA+++ +A EA+S F++M + + PD ++ ++L AC
Sbjct: 425 IRNMI------TWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAILTAC 473
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T + + CS L ++LGR H +++ + + + + + +YG DAR V DEM
Sbjct: 165 TLSSAVKACSELGEVRLGRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEM 224
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM-RDRELIPDGLTVRSLLCAC 160
P+ PD+ W A+++ + EA+ LF M R + L+PDG T ++L AC
Sbjct: 225 PE------PDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTAC 275
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG-SLEDARVVS 101
P YA L+ TC+ + S G + H H++ S + D + N +L++Y K G + + R V
Sbjct: 61 PKLYASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVF 120
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
D ++ I SW ++++G + +A+ +F EM L + T+ S + AC+
Sbjct: 121 DGRFVKDAI------SWTSMMSGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVKACS 174
Query: 162 SPSNV 166
V
Sbjct: 175 ELGEV 179
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 79/141 (56%), Gaps = 11/141 (7%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78
L+ EAL + L+ + ++ P T+ +I C+ L ++G V++ IL + D+
Sbjct: 85 GLFPEALEFYGKLRES---KVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDL 141
Query: 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138
+ N +++MY + G L AR V DEMP R DL SWN++I+G +S EA+ ++
Sbjct: 142 FVGNALVDMYSRMGLLTRARQVFDEMPVR------DLVSWNSLISGYSSHGYYEEALEIY 195
Query: 139 SEMRDRELIPDGLTVRSLLCA 159
E+++ ++PD TV S+L A
Sbjct: 196 HELKNSWIVPDSFTVSSVLPA 216
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 6/137 (4%)
Query: 32 FLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91
FL+N F+ T + ++ C LR L L + +++++L + + ++N ++++Y KC
Sbjct: 296 FLENLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKC 355
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL 151
G + AR V + M E D SWN+II+G + EAM LF M E D +
Sbjct: 356 GDMITARDVFNSM------ECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHI 409
Query: 152 TVRSLLCACTSPSNVLY 168
T L+ T +++ +
Sbjct: 410 TYLMLISVSTRLADLKF 426
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T+ + C+SL + +LG+++H +L + ++ + N ++ MY KCG LE++ V +
Sbjct: 510 ATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFER 569
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
M +R+V+ +W +I +A+ F++M ++PD + +++ AC+
Sbjct: 570 MSRRDVV------TWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACS 621
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY LIS + L L+ G+ +H + + S D+ + N +++MY KCG + D+ + M
Sbjct: 410 TYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSM 469
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+ D +WN +I+ + + + ++MR E++PD T L C S
Sbjct: 470 G------TGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCAS 521
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 12/143 (8%)
Query: 20 QNLYNEALVAFDFLQNNTNFRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
Y EAL + L+N+ I P ++ + ++ +L ++ G+ +H L S
Sbjct: 185 HGYYEEALEIYHELKNSW---IVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSV 241
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
VV+ N ++ MY K DAR V DEM R D S+N +I G E++ +
Sbjct: 242 VVVNNGLVAMYLKFRRPTDARRVFDEMDVR------DSVSYNTMICGYLKLEMVEESVRM 295
Query: 138 FSEMRDRELIPDGLTVRSLLCAC 160
F E D + PD LTV S+L AC
Sbjct: 296 FLENLD-QFKPDLLTVSSVLRAC 317
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
R V + ++ WN+II + EA+ + ++R+ ++ PD T S++ AC
Sbjct: 63 RRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAG 118
>sp|Q9C9H9|PP114_ARATH Pentatricopeptide repeat-containing protein At1g71420
OS=Arabidopsis thaliana GN=PCMP-H70 PE=2 SV=1
Length = 745
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 9/118 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLEDARVVSD 102
YA L C+ R+L G +H H+LS +V+L N+++NMY KCG++ AR V D
Sbjct: 61 AYAALFQACAEQRNLLDGINLHHHMLSHPYCYSQNVILANFLINMYAKCGNILYARQVFD 120
Query: 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
MP+RNV+ SW A+I G N E LFS M P+ T+ S+L +C
Sbjct: 121 TMPERNVV------SWTALITGYVQAGNEQEGFCLFSSMLS-HCFPNEFTLSSVLTSC 171
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 9/122 (7%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T++ ++ C+ L + + +H ++ D VL N +++ Y KCGSL+ V D+M
Sbjct: 371 TFSSVLKACAGLVTARHALSIHAQVIKGGFLADTVLNNSLIHAYAKCGSLDLCMRVFDDM 430
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
R+V+ SWN+++ + + + +F +M ++ PD T +LL AC+
Sbjct: 431 DSRDVV------SWNSMLKAYSLHGQVDSILPVFQKM---DINPDSATFIALLSACSHAG 481
Query: 165 NV 166
V
Sbjct: 482 RV 483
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121
G++VH L + + N +++MYG+C D + I+ +L +WN++
Sbjct: 176 GKQVHGLALKLGLHCSIYVANAVISMYGRC---HDGAAAYEAWTVFEAIKFKNLVTWNSM 232
Query: 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
IA + +A+ +F M + G +LL C+S
Sbjct: 233 IAAFQCCNLGKKAIGVFMRMHSDGV---GFDRATLLNICSS 270
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 114 DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
D+ +WN II A + A+ LF ++R +L PD T S+L AC
Sbjct: 334 DIVAWNGIITAFA-VYDPERAIHLFGQLRQEKLSPDWYTFSSVLKACAG 381
>sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3
SV=1
Length = 689
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 7/146 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
+L E LV F+ ++ N N TY LI C+ L +L G+ H ++ S + L
Sbjct: 221 DLCEEGLVLFNRMREN-NVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCL 279
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
+L+MY KCG + +AR V +E DL W A+I G + NEA+SLF +
Sbjct: 280 VTSLLDMYVKCGDISNARRVFNEHSH------VDLVMWTAMIVGYTHNGSVNEALSLFQK 333
Query: 141 MRDRELIPDGLTVRSLLCACTSPSNV 166
M+ E+ P+ +T+ S+L C N+
Sbjct: 334 MKGVEIKPNCVTIASVLSGCGLIENL 359
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 14/142 (9%)
Query: 24 NEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSK-SQPDVVL 80
NEAL F Q I+P+ T A ++S C + +L+LGR VH LS K D +
Sbjct: 325 NEALSLF---QKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHG--LSIKVGIWDTNV 379
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N +++MY KC DA+ V + ++ D+ +WN+II+G + + +EA+ LF
Sbjct: 380 ANALVHMYAKCYQNRDAKYVFEMESEK------DIVAWNSIISGFSQNGSIHEALFLFHR 433
Query: 141 MRDRELIPDGLTVRSLLCACTS 162
M + P+G+TV SL AC S
Sbjct: 434 MNSESVTPNGVTVASLFSACAS 455
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 6 KTQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKV 65
K LR N + + E + +D L + FR ++ + C+ L+ L G+K+
Sbjct: 111 KVMLRCYCLNKESV-----EVVKLYDLLMKH-GFRYDDIVFSKALKACTELQDLDNGKKI 164
Query: 66 HDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGV 125
H ++ S +VVL +L+MY KCG ++ A V +++ RNV+ W ++IAG
Sbjct: 165 HCQLVKVPSFDNVVLTG-LLDMYAKCGEIKSAHKVFNDITLRNVV------CWTSMIAGY 217
Query: 126 ASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164
E + LF+ MR+ ++ + T +L+ ACT S
Sbjct: 218 VKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLS 256
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 9/145 (6%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDH--ILSSKSQPDVVLQ 81
+EAL F + N+ + T A L S C+SL SL +G +H + L + V +
Sbjct: 425 HEALFLFHRM-NSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVG 483
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+L+ Y KCG + AR++ D + ++N I +W+A+I G + ++ LF EM
Sbjct: 484 TALLDFYAKCGDPQSARLIFDTIEEKNTI------TWSAMIGGYGKQGDTIGSLELFEEM 537
Query: 142 RDRELIPDGLTVRSLLCACTSPSNV 166
++ P+ T S+L AC V
Sbjct: 538 LKKQQKPNESTFTSILSACGHTGMV 562
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
L+S C+++ SL R+ H + + D+ + ++++YG G +DAR+V D++P+
Sbjct: 50 LLSKCTNIDSL---RQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPE-- 104
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
PD W ++ + E + L+ + D + L ACT
Sbjct: 105 ----PDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACT 153
>sp|O04590|PPR88_ARATH Pentatricopeptide repeat-containing protein At1g62260,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E10 PE=2
SV=1
Length = 656
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 8/120 (6%)
Query: 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD 102
P T L+S + L +L+LG ++H I+ PDV + N ++ MY +CG + ++R + D
Sbjct: 409 PHTLTSLLSASTGLVNLRLGMQMH-QIVVKTVIPDVPVHNALITMYSRCGEIMESRRIFD 467
Query: 103 EMP-QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
EM +R VI +WNA+I G A NA+EA++LF M+ + P +T S+L AC
Sbjct: 468 EMKLKREVI------TWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACA 521
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS---LEDARVVS 101
T+ +IS R + RK+ D + + DVV N +++ Y CG LE+AR +
Sbjct: 73 TWNTMISGYVKRREMNQARKLFDVM----PKRDVVTWNTMISGYVSCGGIRFLEEARKLF 128
Query: 102 DEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
DEMP R D SWN +I+G A EA+ LF +M +R +
Sbjct: 129 DEMPSR------DSFSWNTMISGYAKNRRIGEALLLFEKMPERNAV 168
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136
+VV N ++ Y K G + AR++ D+M R+ I SWN +I G S +A +
Sbjct: 280 NVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTI------SWNTMIDGYVHVSRMEDAFA 333
Query: 137 LFSEMRDRE 145
LFSEM +R+
Sbjct: 334 LFSEMPNRD 342
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N +++ Y G++E AR ++ P+++ + SWN+IIA + EA+ LF M
Sbjct: 347 NMMVSGYASVGNVELARHYFEKTPEKHTV------SWNSIIAAYEKNKDYKEAVDLFIRM 400
Query: 142 RDRELIPDGLTVRSLLCACTSPSNV 166
PD T+ SLL A T N+
Sbjct: 401 NIEGEKPDPHTLTSLLSASTGLVNL 425
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 10/89 (11%)
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
N LN + G + +AR + +++ RN + +WN +I+G N+A LF M
Sbjct: 44 NKELNQMIRSGYIAEARDIFEKLEARNTV------TWNTMISGYVKRREMNQARKLFDVM 97
Query: 142 RDRELIPDGLTVRSLLCACTSPSNVLYLD 170
R+++ T +++ S + +L+
Sbjct: 98 PKRDVV----TWNTMISGYVSCGGIRFLE 122
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 21/93 (22%)
Query: 70 LSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ---------------RNVIESPD 114
L S + V N ++ YG+ G +E AR + D++P +NV+
Sbjct: 227 LVSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGGEFRERFCKNVV---- 282
Query: 115 LASWNAIIAGVASPSNANEAMSLFSEMRDRELI 147
SWN++I + A LF +M+DR+ I
Sbjct: 283 --SWNSMIKAYLKVGDVVSARLLFDQMKDRDTI 313
>sp|Q9FM64|PP431_ARATH Pentatricopeptide repeat-containing protein At5g55740,
chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1
Length = 830
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 13/144 (9%)
Query: 26 ALVAF-DFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
AL+ F + L+N I P + + C +L+ + GR VH +++ S + V + +
Sbjct: 157 ALMGFVEMLEN----EIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVAS 212
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+ +MYGKCG L+DA V DE+P RN + +WNA++ G EA+ LFS+MR
Sbjct: 213 SLADMYGKCGVLDDASKVFDEIPDRNAV------AWNALMVGYVQNGKNEEAIRLFSDMR 266
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
+ + P +TV + L A + V
Sbjct: 267 KQGVEPTRVTVSTCLSASANMGGV 290
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T A L+S + +L+LG++V + + + D+VL + +++MY KCGS+ DA+ V D
Sbjct: 377 TLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDST 436
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
++ DL WN ++A A + EA+ LF M+ + P+ +T
Sbjct: 437 VEK------DLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVIT 478
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 73/142 (51%), Gaps = 11/142 (7%)
Query: 29 AFDFLQNNTNFRIRPSTYACLI--STCSSLRSLQLGRKVHDHILSSKSQPDVV-LQNYIL 85
A FL+ +RP+ ++ + S C+ L SL +GR +H +I+ + +V ++ ++
Sbjct: 530 AILFLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGYIIRNLQHSSLVSIETSLV 589
Query: 86 NMYGKCGSLEDA-RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
+MY KCG + A +V ++ +L NA+I+ A N EA++L+ +
Sbjct: 590 DMYAKCGDINKAEKVFGSKL-------YSELPLSNAMISAYALYGNLKEAIALYRSLEGV 642
Query: 145 ELIPDGLTVRSLLCACTSPSNV 166
L PD +T+ ++L AC ++
Sbjct: 643 GLKPDNITITNVLSACNHAGDI 664
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLE 95
N RI P Y ++ C R L G+++H IL + + ++ ++ Y KC +LE
Sbjct: 65 NLRIGPEIYGEILQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALE 124
Query: 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155
A V+ ++ RNV SW AII A+ F EM + E+ PD V +
Sbjct: 125 IAEVLFSKLRVRNVF------SWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPN 178
Query: 156 LLCACTS 162
+ AC +
Sbjct: 179 VCKACGA 185
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 8/149 (5%)
Query: 19 IQNLYNE-ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
+QN NE A+ F ++ R + CL S +++ ++ G++ H + + + D
Sbjct: 250 VQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCL-SASANMGGVEEGKQSHAIAIVNGMELD 308
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
+L +LN Y K G +E A +V D M +++V+ +WN II+G +A+ +
Sbjct: 309 NILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVV------TWNLIISGYVQQGLVEDAIYM 362
Query: 138 FSEMRDRELIPDGLTVRSLLCACTSPSNV 166
MR +L D +T+ +L+ A N+
Sbjct: 363 CQLMRLEKLKYDCVTLATLMSAAARTENL 391
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135
P+V+ N I+ + G +++A+ + +M +I P+L SW ++ G+ + EA+
Sbjct: 474 PNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGII--PNLISWTTMMNGMVQNGCSEEAI 531
Query: 136 SLFSEMRDRELIPDGLTVRSLLCACT 161
+M++ L P+ ++ L AC
Sbjct: 532 LFLRKMQESGLRPNAFSITVALSACA 557
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 7/118 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ ++ C+ + G++VH I+ DV + N ++++YG CG L+ AR V DEM
Sbjct: 153 TFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEM 212
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
P+R+ L SWN++I + + A+ LF EM+ R PDG T++S+L AC
Sbjct: 213 PERS------LVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAG 263
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 73/143 (51%), Gaps = 13/143 (9%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS---KSQPDVV 79
Y+ AL F +Q + F T ++S C+ L SL LG H +L DV+
Sbjct: 233 YDSALQLFREMQRS--FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVL 290
Query: 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139
++N ++ MY KCGSL A V M +R DLASWNA+I G A+ A EAM+ F
Sbjct: 291 VKNSLIEMYCKCGSLRMAEQVFQGMQKR------DLASWNAMILGFATHGRAEEAMNFFD 344
Query: 140 EMRDRE--LIPDGLTVRSLLCAC 160
M D+ + P+ +T LL AC
Sbjct: 345 RMVDKRENVRPNSVTFVGLLIAC 367
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 69/120 (57%), Gaps = 8/120 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
++S C+ + L+LGR +H H + + + + + + +++MYGKCG +ED+ DEMP++N
Sbjct: 316 VLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKN 375
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL--IPDGLTVRSLLCACTSPSNV 166
++ + N++I G A + A++LF EM R P+ +T SLL AC+ V
Sbjct: 376 LV------TRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAV 429
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSS-KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQR 107
L+ S S++LGR VH I+ + S P L NY++NMY K E AR+V P R
Sbjct: 12 LLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPAR 71
Query: 108 NVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152
NV+ SW ++I+G+A + + A+ F EMR ++P+ T
Sbjct: 72 NVV------SWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFT 110
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ C +SLR G+++H + DV + +MY K +DAR + DE+
Sbjct: 110 TFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEI 169
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
P+RN L +WNA I+ + EA+ F E R + P+ +T + L AC+
Sbjct: 170 PERN------LETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACS 220
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 15/167 (8%)
Query: 3 RNLKTQLRF---TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSL 59
RNL+T F + + +P + + EA + F + + N T+ ++ CS L
Sbjct: 172 RNLETWNAFISNSVTDGRPREAI--EAFIEFRRIDGHPN----SITFCAFLNACSDWLHL 225
Query: 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119
LG ++H +L S DV + N +++ YGKC + + ++ EM +N + SW
Sbjct: 226 NLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAV------SWC 279
Query: 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+++A +A L+ R + + S+L AC + +
Sbjct: 280 SLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGL 326
>sp|Q9XE98|PP303_ARATH Pentatricopeptide repeat-containing protein At4g04370
OS=Arabidopsis thaliana GN=PCMP-E99 PE=3 SV=1
Length = 729
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 78/142 (54%), Gaps = 10/142 (7%)
Query: 25 EALVAF-DFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+AL+ F + LQ+ ++ + A ++++C+ L S LG VH ++L D N
Sbjct: 329 KALIVFSEMLQSGSD--LSSEAIASVVASCAQLGSFDLGASVHGYVLRHGYTLDTPALNS 386
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++ MY KCG L+ + V+ + M +R DL SWNAII+G A + +A+ LF EM+
Sbjct: 387 LITMYAKCGHLDKSLVIFERMNER------DLVSWNAIISGYAQNVDLCKALLLFEEMKF 440
Query: 144 RELIP-DGLTVRSLLCACTSPS 164
+ + D TV SLL AC+S
Sbjct: 441 KTVQQVDSFTVVSLLQACSSAG 462
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ C+SL+ L G +H +L + D + + ++N+Y K G L AR V +EM
Sbjct: 48 TFPSLLKACASLQRLSFGLSIHQQVLVNGFSSDFYISSSLVNLYAKFGLLAHARKVFEEM 107
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+R+V+ W A+I + EA SL +EMR + + P +T+ +L
Sbjct: 108 RERDVVH------WTAMIGCYSRAGIVGEACSLVNEMRFQGIKPGPVTLLEML 154
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 72/137 (52%), Gaps = 6/137 (4%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84
+AL+ F+ ++ T ++ T L+ CSS +L +G+ +H ++ S +P ++ +
Sbjct: 430 KALLLFEEMKFKTVQQVDSFTVVSLLQACSSAGALPVGKLIHCIVIRSFIRPCSLVDTAL 489
Query: 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144
++MY KCG LE A+ D + ++V+ SW +IAG + A+ ++SE
Sbjct: 490 VDMYSKCGYLEAAQRCFDSISWKDVV------SWGILIAGYGFHGKGDIALEIYSEFLHS 543
Query: 145 ELIPDGLTVRSLLCACT 161
+ P+ + ++L +C+
Sbjct: 544 GMEPNHVIFLAVLSSCS 560
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 33 LQNNTNFR-IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91
L N F+ I+P L L QL + +HD + D+ + N +LN+Y KC
Sbjct: 134 LVNEMRFQGIKPGPVTLLEMLSGVLEITQL-QCLHDFAVIYGFDCDIAVMNSMLNLYCKC 192
Query: 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD 149
+ DA+ + D+M QR D+ SWN +I+G AS N +E + L MR L PD
Sbjct: 193 DHVGDAKDLFDQMEQR------DMVSWNTMISGYASVGNMSEILKLLYRMRGDGLRPD 244
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 41 IRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98
+RP T+ +S ++ L++GR +H I+ + D+ L+ ++ MY KCG E +
Sbjct: 241 LRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKCGKEEASY 300
Query: 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
V + +P ++V+ W +I+G+ A +A+ +FSEM
Sbjct: 301 RVLETIPNKDVV------CWTVMISGLMRLGRAEKALIVFSEM 337
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
+N+ I ++S + + +S FS M +L+PD T SLL AC S
Sbjct: 14 FNSHINHLSSHGDHKQVLSTFSSMLANKLLPDTFTFPSLLKACAS 58
>sp|Q9ZQE5|PP153_ARATH Pentatricopeptide repeat-containing protein At2g15690
OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2
Length = 579
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 6/121 (4%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
+ L +C++L+SL+ +KVHDH L SK + D L N +++M+G+C S+ DA+ V D M
Sbjct: 239 FVLLFESCANLKSLEHSKKVHDHFLQSKFRGDPKLNNMVISMFGECSSITDAKRVFDHMV 298
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165
+ D+ SW+ ++ + ++A+ LF EM L P+ T ++ AC +
Sbjct: 299 DK------DMDSWHLMMCAYSDNGMGDDALHLFEEMTKHGLKPNEETFLTVFLACATVGG 352
Query: 166 V 166
+
Sbjct: 353 I 353
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 80/139 (57%), Gaps = 11/139 (7%)
Query: 25 EALVAFDFLQNNTNFRIRPSTYACL--ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
EAL+ F +Q + ++P A + ++ C++L +L G VH ++LS + +V + N
Sbjct: 189 EALLWFREMQISG---VKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSN 245
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
++++Y +CG +E AR V M +R V+ SWN++I G A+ NA+E++ F +M+
Sbjct: 246 SLIDLYCRCGCVEFARQVFYNMEKRTVV------SWNSVIVGFAANGNAHESLVYFRKMQ 299
Query: 143 DRELIPDGLTVRSLLCACT 161
++ PD +T L AC+
Sbjct: 300 EKGFKPDAVTFTGALTACS 318
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108
+I S + R V D++ S V N +++ Y + G +++A + D+MP+R
Sbjct: 115 IIGMYSKRGRFKKARLVFDYMEDKNS----VTWNTMIDGYMRSGQVDNAAKMFDKMPER- 169
Query: 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
DL SW A+I G EA+ F EM+ + PD + + + L ACT
Sbjct: 170 -----DLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACT 217
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 77/144 (53%), Gaps = 7/144 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
+NE+L F +Q+ T +++ C+ L SL++G + +I +K + DVV+ N
Sbjct: 349 FNESLEIFREMQS-AGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGN 407
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG E A+ V +M QR D +W A++ G+A+ EA+ +F +M+
Sbjct: 408 ALIDMYFKCGCSEKAQKVFHDMDQR------DKFTWTAMVVGLANNGQGQEAIKVFFQMQ 461
Query: 143 DRELIPDGLTVRSLLCACTSPSNV 166
D + PD +T +L AC V
Sbjct: 462 DMSIQPDDITYLGVLSACNHSGMV 485
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 25/142 (17%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T ++S CS ++ L ++VH+++ K++P + L+N ++N Y CG ++ A + M
Sbjct: 238 TLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSM 297
Query: 105 PQRNVI-----------------------ESP--DLASWNAIIAGVASPSNANEAMSLFS 139
R+VI + P D SW +I G NE++ +F
Sbjct: 298 KARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFR 357
Query: 140 EMRDRELIPDGLTVRSLLCACT 161
EM+ +IPD T+ S+L AC
Sbjct: 358 EMQSAGMIPDEFTMVSVLTACA 379
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117
+L G+K+H H++ ++ +QN ++ MY CG ++ AR V D + +V S
Sbjct: 150 ALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVF------S 203
Query: 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162
WN +I+G E++ L EM + P +T+ +L AC+
Sbjct: 204 WNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSK 248
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 25 EALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSS-KSQPDVVLQ 81
EA+ F +Q+ + I+P TY ++S C+ + RK + S + +P +V
Sbjct: 452 EAIKVFFQMQDMS---IQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHY 508
Query: 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141
+++M G+ G +++A + +MP +P+ W A++ AS + +E M+ +
Sbjct: 509 GCMVDMLGRAGLVKEAYEILRKMPM-----NPNSIVWGALLG--ASRLHNDEPMAELAAK 561
Query: 142 RDRELIPDGLTVRSLLC 158
+ EL PD V +LLC
Sbjct: 562 KILELEPDNGAVYALLC 578
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 4/140 (2%)
Query: 18 PIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
P+++ +N L F L +T + Y+ IS ++ +++H ++ P+
Sbjct: 6 PLKSPFNSELSIFKALLMSTITESISNDYSRFISILGVCKTTDQFKQLHSQSITRGVAPN 65
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
Q + + C L VS I PD+ WN +I G + E + L
Sbjct: 66 PTFQKKLFVFW--CSRLGGH--VSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRL 121
Query: 138 FSEMRDRELIPDGLTVRSLL 157
+ M + PD T LL
Sbjct: 122 YLNMLKEGVTPDSHTFPFLL 141
>sp|Q9LT48|PP244_ARATH Pentatricopeptide repeat-containing protein At3g20730
OS=Arabidopsis thaliana GN=PCMP-E94 PE=2 SV=1
Length = 565
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 76/136 (55%), Gaps = 9/136 (6%)
Query: 29 AFDFLQNNTNFRIR--PSTYACLISTCSSLRSLQLGRKVHDHIL-SSKSQPDVVLQNYIL 85
AFD ++ + + + ++ C+++ S+ +GR++H L SS+ + DV L N ++
Sbjct: 301 AFDIFKDMIRMKTKMDEVVVSSMLKICTTIASVTIGRQIHGFALKSSQIRFDVALGNSLI 360
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145
+MY K G +EDA + +EM ++ D+ SW ++IAG N +A+ L++ M
Sbjct: 361 DMYAKSGEIEDAVLAFEEMKEK------DVRSWTSLIAGYGRHGNFEKAIDLYNRMEHER 414
Query: 146 LIPDGLTVRSLLCACT 161
+ P+ +T SLL AC+
Sbjct: 415 IKPNDVTFLSLLSACS 430
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 62/113 (54%), Gaps = 6/113 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY ++ +C L L+ G ++H + ++++++ +L++Y +CG +E+AR+ D M
Sbjct: 116 TYGSVLKSCKDLGCLKEGMQIHGSVEKGNCAGNLIVRSALLSLYARCGKMEEARLQFDSM 175
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
+R DL SWNA+I G + + A+ + SLF M PD T SLL
Sbjct: 176 KER------DLVSWNAMIDGYTANACADTSFSLFQLMLTEGKKPDCFTFGSLL 222
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 38 NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97
N+ + PS Y + CS + +H + +++ ++ L++ ++++Y K G ++ A
Sbjct: 8 NYLLSPSLYLKALKLCSYQNVKKQLLLIHGNSITNGFCSNLQLKDMLIDLYLKQGDVKHA 67
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
R + D + +R+V+ SW A+I+ + +A+ LF EM ++ + T S+L
Sbjct: 68 RKLFDRISKRDVV------SWTAMISRFSRCGYHPDALLLFKEMHREDVKANQFTYGSVL 121
Query: 158 CAC 160
+C
Sbjct: 122 KSC 124
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+ L+ ++ L++ ++H + L ++N Y KCGSL +A + +
Sbjct: 217 TFGSLLRASIVVKCLEIVSELHGLAIKLGFGRSSALIRSLVNAYVKCGSLANAWKLHEGT 276
Query: 105 PQRNVIESPDLASWNAIIAGVASPSN-ANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163
+R DL S A+I G + +N ++A +F +M + D + V S+L CT+
Sbjct: 277 KKR------DLLSCTALITGFSQQNNCTSDAFDIFKDMIRMKTKMDEVVVSSMLKICTTI 330
Query: 164 SNV 166
++V
Sbjct: 331 ASV 333
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 29 AFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYIL 85
A D + RI+P+ T+ L+S CS +LG K++D +++ + + I+
Sbjct: 403 AIDLYNRMEHERIKPNDVTFLSLLSACSHTGQTELGWKIYDTMINKHGIEAREEHLSCII 462
Query: 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122
+M + G LE+A + + + I S ++W A +
Sbjct: 463 DMLARSGYLEEAYAL---IRSKEGIVSLSSSTWGAFL 496
>sp|Q9FK33|PP427_ARATH Pentatricopeptide repeat-containing protein At5g50390,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2
SV=1
Length = 701
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Query: 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80
N + EA F+ L+ +F++ STY L+ C L+S++ ++V+ ++S+ +P+ +
Sbjct: 101 NRFREAFELFEILEIRCSFKVGVSTYDALVEACIRLKSIRCVKRVYGFMMSNGFEPEQYM 160
Query: 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140
N IL M+ KCG + DAR + DE+P+RN L S+ +II+G + N EA LF
Sbjct: 161 MNRILLMHVKCGMIIDARRLFDEIPERN------LYSYYSIISGFVNFGNYVEAFELFKM 214
Query: 141 MRD 143
M +
Sbjct: 215 MWE 217
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 73/139 (52%), Gaps = 6/139 (4%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y+E + + ++ I T + +I + L L+L ++ H ++ + + ++V
Sbjct: 305 YSEEALCLLYDMRDSGVSIDQFTLSIMIRISTKLAKLELTKQAHASLIRNGFESEIVANT 364
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++ Y K G ++ AR V D++P++N+I SWNA++ G A+ +A+ LF +M
Sbjct: 365 ALVDFYSKWGRVDTARYVFDKLPRKNII------SWNALMGGYANHGRGTDAVKLFEKMI 418
Query: 143 DRELIPDGLTVRSLLCACT 161
+ P+ +T ++L AC
Sbjct: 419 AANVAPNHVTFLAVLSACA 437
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 7/131 (5%)
Query: 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82
Y EA F + + T+A ++ + L S+ +G+++H L + +
Sbjct: 205 YVEAFELFKMMWEELS-DCETHTFAVMLRASAGLGSIYVGKQLHVCALKLGVVDNTFVSC 263
Query: 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142
+++MY KCG +EDAR + MP++ + +WN +IAG A + EA+ L +MR
Sbjct: 264 GLIDMYSKCGDIEDARCAFECMPEKTTV------AWNNVIAGYALHGYSEEALCLLYDMR 317
Query: 143 DRELIPDGLTV 153
D + D T+
Sbjct: 318 DSGVSIDQFTL 328
>sp|O82363|PP203_ARATH Pentatricopeptide repeat-containing protein At2g46050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E39 PE=3
SV=1
Length = 590
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 15 NSQPIQNLYNEALVAFDFLQNNTN-FRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK 73
+S + + +EA + ++ N FR T++ L+S C ++ G+++H +
Sbjct: 216 SSYVLNGMIDEAFGLLKLMGSDKNRFRGDYFTFSSLLSACR----IEQGKQIHAILFKVS 271
Query: 74 SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133
Q D+ + +LNMY K L DAR + M RNV+ SWNA+I G A E
Sbjct: 272 YQFDIPVATALLNMYAKSNHLSDARECFESMVVRNVV------SWNAMIVGFAQNGEGRE 325
Query: 134 AMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
AM LF +M L PD LT S+L +C S +
Sbjct: 326 AMRLFGQMLLENLQPDELTFASVLSSCAKFSAI 358
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
T+A ++S+C+ ++ ++V + S + + N +++ Y + G+L +A +
Sbjct: 344 TFASVLSSCAKFSAIWEIKQVQAMVTKKGSADFLSVANSLISSYSRNGNLSEALLCF--- 400
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ I PDL SW ++I +AS A E++ +F M + L PD +T +L AC+
Sbjct: 401 ---HSIREPDLVSWTSVIGALASHGFAEESLQMFESMLQK-LQPDKITFLEVLSACS 453
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96
T+ + ++ LI C+ +++ G ++H ++ + +++ YGKCG + +
Sbjct: 136 TDVSLDHVSFMGLIRLCTDSTNMKAGIQLHCLMVKQGLESSCFPSTSLVHFYGKCGLIVE 195
Query: 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE--LIPDGLTVR 154
AR V + + R DL WNA+++ +EA L M + D T
Sbjct: 196 ARRVFEAVLDR------DLVLWNALVSSYVLNGMIDEAFGLLKLMGSDKNRFRGDYFTFS 249
Query: 155 SLLCAC 160
SLL AC
Sbjct: 250 SLLSAC 255
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 54 SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESP 113
+SL L ++ H ++ + LQN +L Y K +DA + DEMP RN++
Sbjct: 47 ASLDHLSDVKQEHGFMVKQGIYNSLFLQNKLLQAYTKIREFDDADKLFDEMPLRNIV--- 103
Query: 114 DLASWNAIIAGVA-----SPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166
+WN +I GV + A+ S + ++ D ++ L+ CT +N+
Sbjct: 104 ---TWNILIHGVIQRDGDTNHRAHLGFCYLSRILFTDVSLDHVSFMGLIRLCTDSTNM 158
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 77.8 bits (190), Expect = 3e-14, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 8/150 (5%)
Query: 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILS 71
Y + + N +N+ A + ++P TY + C+ L + +GR VH +
Sbjct: 101 YMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFK 160
Query: 72 SKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNA 131
+ DV + + ++ MY KCG + AR + DE+ +R D SWN++I+G + A
Sbjct: 161 VGLERDVHINHSLIMMYAKCGQVGYARKLFDEITER------DTVSWNSMISGYSEAGYA 214
Query: 132 NEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+AM LF +M + PD T+ S+L AC+
Sbjct: 215 KDAMDLFRKMEEEGFEPDERTLVSMLGACS 244
Score = 71.2 bits (173), Expect = 3e-12, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
+EA F F T T + ++S C S+ +L+LG+++ H Q ++ +
Sbjct: 316 SEAFKLF-FEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATG 374
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
+++MYGKCG +E+A V + MP +N A+WNA+I A +A EA+ LF M
Sbjct: 375 LVDMYGKCGRVEEALRVFEAMPVKNE------ATWNAMITAYAHQGHAKEALLLFDRM-- 426
Query: 144 RELIPDGLTVRSLLCAC 160
+ P +T +L AC
Sbjct: 427 -SVPPSDITFIGVLSAC 442
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 11/145 (7%)
Query: 23 YNEALVAFDFLQ-----NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77
Y+EA A D + F T ++ CS L L+ GR + + ++ K
Sbjct: 208 YSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLS 267
Query: 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137
L + +++MYGKCG L+ AR V ++M ++ D +W A+I + ++EA L
Sbjct: 268 TFLGSKLISMYGKCGDLDSARRVFNQMIKK------DRVAWTAMITVYSQNGKSSEAFKL 321
Query: 138 FSEMRDRELIPDGLTVRSLLCACTS 162
F EM + PD T+ ++L AC S
Sbjct: 322 FFEMEKTGVSPDAGTLSTVLSACGS 346
Score = 33.9 bits (76), Expect = 0.55, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 108 NVIESPDLASWNAIIAGVASPSNANE-AMSLFSEMRDRELIPDGLTVRSLLCAC 160
+V E P+ S+N +I G+ + N +E A+SL+ M+ L PD T + AC
Sbjct: 89 SVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIAC 142
>sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350
OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1
Length = 677
Score = 77.8 bits (190), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 74/137 (54%), Gaps = 7/137 (5%)
Query: 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83
N+AL+ FD++ N + + +T ++ C L+ L++GR VH + + + ++N
Sbjct: 200 NDALMMFDWMVNES-VDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNA 258
Query: 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143
++NMY KCG +++AR V D M +R+VI +W +I G + A+ L M+
Sbjct: 259 LVNMYLKCGRMDEARFVFDRMERRDVI------TWTCMINGYTEDGDVENALELCRLMQF 312
Query: 144 RELIPDGLTVRSLLCAC 160
+ P+ +T+ SL+ C
Sbjct: 313 EGVRPNAVTIASLVSVC 329
Score = 63.5 bits (153), Expect = 6e-10, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104
TY + L+S++LG VH IL S D +QN +L MY G +E AR V D M
Sbjct: 119 TYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVM 178
Query: 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160
R+VI SWN +I+G N+A+ +F M + + D T+ S+L C
Sbjct: 179 KNRDVI------SWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVC 228
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 10/122 (8%)
Query: 41 IRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA- 97
+RP+ T A L+S C + G+ +H + + D++++ +++MY KC ++
Sbjct: 315 VRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCF 374
Query: 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157
RV S W+AIIAG ++A+ LF MR ++ P+ T+ SLL
Sbjct: 375 RVFSGASKYHT-------GPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLL 427
Query: 158 CA 159
A
Sbjct: 428 PA 429
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103
+T L+ ++L L+ +H ++ + + ++++Y KCG+LE A + +
Sbjct: 421 ATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNG 480
Query: 104 MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161
+ +++ +S D+ W A+I+G + + A+ +F EM + P+ +T S L AC+
Sbjct: 481 IQEKH--KSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACS 536
Score = 37.0 bits (84), Expect = 0.056, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105
Y L++ ++ +S+ + +H H+++ +L + Y CG + AR + +EMP
Sbjct: 18 YQSLLNHFAATQSISKTKALHCHVITGGRVSGHILSTLSVT-YALCGHITYARKLFEEMP 76
Query: 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR--ELIPDGLT 152
Q + L S+N +I ++A+S+F M + +PDG T
Sbjct: 77 QSS------LLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYT 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,109,097
Number of Sequences: 539616
Number of extensions: 2056911
Number of successful extensions: 7364
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 4602
Number of HSP's gapped (non-prelim): 1857
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)