Query 038114
Match_columns 170
No_of_seqs 174 out of 1312
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 07:44:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3E-34 6.5E-39 232.8 16.9 160 6-168 612-772 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 5.1E-34 1.1E-38 231.5 17.2 160 6-168 435-597 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 4.1E-34 9E-39 227.1 15.1 157 6-169 288-445 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 1.6E-31 3.5E-36 216.5 15.7 157 6-169 251-408 (857)
5 PLN03081 pentatricopeptide (PP 100.0 3.7E-31 8E-36 210.4 15.6 157 6-169 187-344 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 1E-30 2.3E-35 211.8 15.1 156 6-168 150-306 (857)
7 PF13041 PPR_2: PPR repeat fam 99.7 6.1E-18 1.3E-22 90.2 6.2 50 113-162 1-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.7 5.5E-17 1.2E-21 86.5 5.5 50 76-127 1-50 (50)
9 KOG4422 Uncharacterized conser 99.5 1.2E-12 2.7E-17 96.1 11.8 155 6-167 205-373 (625)
10 KOG4422 Uncharacterized conser 99.4 6.4E-12 1.4E-16 92.4 11.5 121 41-167 205-329 (625)
11 PRK11788 tetratricopeptide rep 99.4 1.7E-11 3.6E-16 91.9 13.7 20 14-33 114-133 (389)
12 PRK11788 tetratricopeptide rep 99.4 3.1E-11 6.7E-16 90.5 14.0 150 13-168 147-300 (389)
13 PF12854 PPR_1: PPR repeat 99.3 4.2E-12 9E-17 61.6 4.3 32 73-104 2-33 (34)
14 PF12854 PPR_1: PPR repeat 99.2 1.1E-11 2.4E-16 60.1 3.5 34 107-142 1-34 (34)
15 TIGR02917 PEP_TPR_lipo putativ 99.2 1.7E-09 3.6E-14 88.2 15.7 147 13-167 607-753 (899)
16 TIGR02917 PEP_TPR_lipo putativ 99.1 3.7E-09 8.1E-14 86.1 15.5 149 13-168 573-721 (899)
17 KOG4318 Bicoid mRNA stability 99.1 1.2E-09 2.7E-14 86.4 11.4 157 4-167 21-288 (1088)
18 TIGR00756 PPR pentatricopeptid 99.0 7.7E-10 1.7E-14 53.9 3.9 34 117-150 2-35 (35)
19 PF13429 TPR_15: Tetratricopep 99.0 1.1E-08 2.4E-13 73.6 10.6 159 6-169 108-267 (280)
20 TIGR02521 type_IV_pilW type IV 98.9 1.6E-07 3.4E-12 64.8 15.3 150 13-167 37-186 (234)
21 PF13812 PPR_3: Pentatricopept 98.9 2E-09 4.4E-14 52.1 4.0 33 116-148 2-34 (34)
22 TIGR02521 type_IV_pilW type IV 98.9 2.2E-07 4.8E-12 64.1 14.8 155 8-168 65-221 (234)
23 PF10037 MRP-S27: Mitochondria 98.8 1E-07 2.2E-12 71.8 10.4 125 37-163 60-186 (429)
24 TIGR00756 PPR pentatricopeptid 98.8 9.7E-09 2.1E-13 49.9 3.1 33 80-114 2-34 (35)
25 PF01535 PPR: PPR repeat; Int 98.7 1.7E-08 3.7E-13 47.7 3.6 30 117-146 2-31 (31)
26 PF13812 PPR_3: Pentatricopept 98.7 1.2E-08 2.5E-13 49.4 2.8 30 80-109 3-32 (34)
27 TIGR00990 3a0801s09 mitochondr 98.6 2.8E-06 6.2E-11 67.7 15.7 152 10-169 333-486 (615)
28 PF10037 MRP-S27: Mitochondria 98.6 1E-06 2.2E-11 66.5 12.3 119 7-128 65-186 (429)
29 PRK15174 Vi polysaccharide exp 98.6 2.7E-06 5.8E-11 68.3 15.4 122 16-143 221-346 (656)
30 PRK15174 Vi polysaccharide exp 98.6 2.4E-06 5.1E-11 68.6 14.8 148 13-167 116-263 (656)
31 PF01535 PPR: PPR repeat; Int 98.6 3.7E-08 8.1E-13 46.5 2.5 29 80-108 2-30 (31)
32 PF08579 RPM2: Mitochondrial r 98.6 1.1E-06 2.5E-11 53.7 8.9 79 47-127 29-116 (120)
33 PF08579 RPM2: Mitochondrial r 98.6 8.7E-07 1.9E-11 54.1 8.1 78 13-91 31-117 (120)
34 PRK12370 invasion protein regu 98.6 9.2E-06 2E-10 64.1 16.1 149 9-164 339-489 (553)
35 PRK12370 invasion protein regu 98.5 7.6E-06 1.6E-10 64.5 14.6 144 19-169 316-460 (553)
36 PF13429 TPR_15: Tetratricopep 98.5 2.1E-07 4.5E-12 67.1 5.4 142 18-166 88-230 (280)
37 PRK09782 bacteriophage N4 rece 98.5 1.1E-05 2.4E-10 67.2 15.8 148 13-168 548-695 (987)
38 TIGR00990 3a0801s09 mitochondr 98.5 8.5E-06 1.8E-10 65.0 14.8 150 13-168 405-560 (615)
39 PF06239 ECSIT: Evolutionarily 98.5 2.2E-06 4.7E-11 58.5 8.9 104 38-143 42-167 (228)
40 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.4E-05 3.1E-10 60.0 13.1 127 7-142 169-295 (395)
41 PRK10747 putative protoheme IX 98.4 2.3E-05 4.9E-10 59.4 13.7 54 114-169 327-380 (398)
42 COG3071 HemY Uncharacterized e 98.4 2.2E-05 4.9E-10 57.8 12.8 157 9-169 188-380 (400)
43 PRK09782 bacteriophage N4 rece 98.4 3.8E-05 8.3E-10 64.1 15.6 145 14-168 516-661 (987)
44 KOG4318 Bicoid mRNA stability 98.4 4.9E-07 1.1E-11 72.3 4.2 91 28-133 11-101 (1088)
45 PF06239 ECSIT: Evolutionarily 98.3 1.4E-05 2.9E-10 54.7 10.3 86 77-164 46-152 (228)
46 PRK11447 cellulose synthase su 98.3 3.2E-05 6.9E-10 66.0 14.6 146 13-168 579-729 (1157)
47 PRK10049 pgaA outer membrane p 98.3 8.2E-05 1.8E-09 61.0 16.1 147 12-167 20-167 (765)
48 PRK10370 formate-dependent nit 98.3 0.00016 3.5E-09 49.5 14.8 111 40-155 70-183 (198)
49 PRK15359 type III secretion sy 98.3 7.3E-05 1.6E-09 48.6 12.5 94 46-143 27-120 (144)
50 PRK10049 pgaA outer membrane p 98.3 7.8E-05 1.7E-09 61.1 15.3 54 52-105 281-337 (765)
51 TIGR00540 hemY_coli hemY prote 98.3 4.8E-05 1.1E-09 57.8 13.0 93 77-169 262-389 (409)
52 PRK14574 hmsH outer membrane p 98.2 7.7E-05 1.7E-09 61.2 14.4 153 13-167 298-467 (822)
53 PF04733 Coatomer_E: Coatomer 98.2 9.2E-06 2E-10 58.8 8.0 93 44-141 132-227 (290)
54 KOG1129 TPR repeat-containing 98.2 2.6E-05 5.6E-10 56.6 9.7 147 13-167 229-375 (478)
55 PRK10747 putative protoheme IX 98.2 0.00011 2.3E-09 55.8 13.2 91 15-109 126-218 (398)
56 TIGR02552 LcrH_SycD type III s 98.2 0.00012 2.6E-09 46.7 11.5 107 44-156 18-124 (135)
57 TIGR03302 OM_YfiO outer membra 98.1 0.00024 5.1E-09 49.8 13.6 158 8-169 34-222 (235)
58 PF09976 TPR_21: Tetratricopep 98.1 0.00033 7E-09 45.5 13.3 126 9-140 13-143 (145)
59 PRK11447 cellulose synthase su 98.1 0.00023 5E-09 60.9 15.7 144 11-157 607-758 (1157)
60 COG5010 TadD Flp pilus assembl 98.1 0.00019 4E-09 50.3 12.4 121 13-139 106-226 (257)
61 PRK11189 lipoprotein NlpI; Pro 98.1 0.00038 8.2E-09 50.7 14.8 123 13-142 70-192 (296)
62 PF04733 Coatomer_E: Coatomer 98.1 8.2E-05 1.8E-09 54.0 11.0 124 13-144 137-265 (290)
63 PRK14574 hmsH outer membrane p 98.1 0.00039 8.4E-09 57.2 15.9 141 13-164 74-217 (822)
64 COG5010 TadD Flp pilus assembl 98.1 0.00046 1E-08 48.4 14.0 151 12-169 71-221 (257)
65 PRK15359 type III secretion sy 98.1 0.00027 5.9E-09 45.9 11.9 94 11-107 28-121 (144)
66 KOG3081 Vesicle coat complex C 98.0 0.00033 7.1E-09 49.4 12.5 137 14-164 115-255 (299)
67 PF05843 Suf: Suppressor of fo 98.0 0.00018 4E-09 51.9 11.2 147 9-160 2-150 (280)
68 TIGR00540 hemY_coli hemY prote 98.0 0.00059 1.3E-08 52.0 14.3 124 13-142 269-397 (409)
69 COG2956 Predicted N-acetylgluc 98.0 0.00034 7.3E-09 50.7 11.8 151 13-168 113-267 (389)
70 COG3071 HemY Uncharacterized e 98.0 0.00048 1E-08 51.0 12.8 128 11-149 267-395 (400)
71 PRK11189 lipoprotein NlpI; Pro 98.0 0.002 4.4E-08 47.0 16.2 92 8-104 98-191 (296)
72 TIGR02552 LcrH_SycD type III s 97.9 0.00047 1E-08 43.9 11.3 92 13-107 23-114 (135)
73 cd00189 TPR Tetratricopeptide 97.9 0.00018 3.8E-09 41.8 8.7 89 13-104 6-94 (100)
74 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00022 4.8E-09 53.8 10.7 115 46-169 172-287 (395)
75 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.001 2.2E-08 41.1 11.6 93 13-106 8-104 (119)
76 PF12921 ATP13: Mitochondrial 97.8 0.00062 1.3E-08 43.1 10.2 98 42-161 1-99 (126)
77 KOG1840 Kinesin light chain [C 97.8 0.00049 1.1E-08 53.5 11.4 161 9-169 284-469 (508)
78 KOG1126 DNA-binding cell divis 97.8 0.00014 2.9E-09 56.9 8.3 121 13-141 359-515 (638)
79 KOG1126 DNA-binding cell divis 97.8 0.00035 7.5E-09 54.7 10.4 153 8-167 421-608 (638)
80 KOG1129 TPR repeat-containing 97.8 0.00021 4.5E-09 52.0 8.2 132 5-143 253-386 (478)
81 cd05804 StaR_like StaR_like; a 97.8 0.001 2.2E-08 49.4 12.4 88 52-141 123-212 (355)
82 KOG1173 Anaphase-promoting com 97.8 0.0003 6.6E-09 54.2 9.5 142 14-163 387-535 (611)
83 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0012 2.7E-08 40.7 11.1 102 44-145 3-106 (119)
84 PRK10370 formate-dependent nit 97.8 0.00094 2E-08 45.8 11.1 109 5-119 70-182 (198)
85 TIGR03302 OM_YfiO outer membra 97.8 0.0018 3.9E-08 45.4 12.8 132 11-144 74-232 (235)
86 cd00189 TPR Tetratricopeptide 97.8 0.00049 1.1E-08 39.8 8.5 95 46-144 3-97 (100)
87 COG3063 PilF Tfp pilus assembl 97.7 0.0017 3.6E-08 45.1 11.6 127 13-144 41-168 (250)
88 KOG2003 TPR repeat-containing 97.7 0.0034 7.3E-08 47.9 14.0 150 11-167 528-711 (840)
89 PRK15179 Vi polysaccharide bio 97.7 0.0019 4.1E-08 52.3 13.4 125 13-144 92-217 (694)
90 KOG4626 O-linked N-acetylgluco 97.7 0.0002 4.4E-09 56.1 7.6 128 13-149 292-420 (966)
91 KOG1155 Anaphase-promoting com 97.7 0.0018 4E-08 49.2 12.0 158 6-169 362-526 (559)
92 COG2956 Predicted N-acetylgluc 97.7 0.0029 6.2E-08 46.1 12.4 129 18-151 46-177 (389)
93 CHL00033 ycf3 photosystem I as 97.6 0.0022 4.7E-08 42.7 11.1 122 42-166 34-167 (168)
94 PF12895 Apc3: Anaphase-promot 97.6 0.00015 3.3E-09 42.4 5.0 80 20-102 2-82 (84)
95 PLN03088 SGT1, suppressor of 97.6 0.0021 4.4E-08 48.2 11.7 91 14-107 9-99 (356)
96 KOG4626 O-linked N-acetylgluco 97.6 0.0031 6.7E-08 49.8 12.2 124 10-141 322-448 (966)
97 PF12895 Apc3: Anaphase-promot 97.6 0.00018 3.9E-09 42.1 4.5 81 56-140 2-83 (84)
98 PF12921 ATP13: Mitochondrial 97.6 0.0015 3.3E-08 41.3 8.9 25 9-33 3-28 (126)
99 PRK15179 Vi polysaccharide bio 97.5 0.0059 1.3E-07 49.6 14.0 126 39-169 82-207 (694)
100 PF14559 TPR_19: Tetratricopep 97.5 0.0009 2E-08 37.2 7.0 52 55-107 3-54 (68)
101 cd05804 StaR_like StaR_like; a 97.5 0.013 2.9E-07 43.5 15.1 149 14-169 50-205 (355)
102 COG4783 Putative Zn-dependent 97.5 0.0048 1E-07 47.1 12.0 124 11-141 310-434 (484)
103 PF13170 DUF4003: Protein of u 97.5 0.0078 1.7E-07 43.9 12.9 147 7-156 57-223 (297)
104 PF03704 BTAD: Bacterial trans 97.5 0.00065 1.4E-08 44.0 6.7 73 79-154 63-140 (146)
105 PF12569 NARP1: NMDA receptor- 97.5 0.012 2.5E-07 46.3 14.4 131 6-142 190-332 (517)
106 KOG2002 TPR-containing nuclear 97.5 0.00089 1.9E-08 54.8 8.3 131 13-147 652-801 (1018)
107 PRK02603 photosystem I assembl 97.5 0.0087 1.9E-07 39.9 12.1 114 45-165 37-166 (172)
108 KOG2003 TPR repeat-containing 97.4 0.005 1.1E-07 47.0 11.6 144 17-166 500-676 (840)
109 PF09976 TPR_21: Tetratricopep 97.4 0.0036 7.8E-08 40.6 9.7 122 43-169 12-137 (145)
110 PLN03088 SGT1, suppressor of 97.4 0.0046 9.9E-08 46.3 11.3 104 51-160 10-113 (356)
111 KOG1914 mRNA cleavage and poly 97.4 0.0077 1.7E-07 46.8 12.4 138 23-166 347-488 (656)
112 KOG1070 rRNA processing protei 97.4 0.0081 1.8E-07 51.4 13.3 135 13-152 1536-1671(1710)
113 KOG1840 Kinesin light chain [C 97.4 0.0051 1.1E-07 48.0 11.3 147 13-159 331-500 (508)
114 COG3063 PilF Tfp pilus assembl 97.4 0.023 4.9E-07 39.6 13.2 152 8-166 69-223 (250)
115 PRK02603 photosystem I assembl 97.3 0.013 2.8E-07 39.1 11.8 79 13-93 41-121 (172)
116 PF12688 TPR_5: Tetratrico pep 97.3 0.015 3.2E-07 36.6 11.0 110 10-126 4-117 (120)
117 CHL00033 ycf3 photosystem I as 97.3 0.0086 1.9E-07 39.8 10.2 89 13-103 41-138 (168)
118 KOG1155 Anaphase-promoting com 97.2 0.0093 2E-07 45.5 10.5 149 13-168 336-484 (559)
119 PF12569 NARP1: NMDA receptor- 97.2 0.037 8.1E-07 43.5 14.3 134 10-148 145-295 (517)
120 PF04840 Vps16_C: Vps16, C-ter 97.2 0.0096 2.1E-07 43.9 10.5 84 45-140 179-262 (319)
121 PF14559 TPR_19: Tetratricopep 97.1 0.0016 3.5E-08 36.2 4.8 63 18-84 2-64 (68)
122 KOG2002 TPR-containing nuclear 97.1 0.0016 3.4E-08 53.4 6.1 155 9-167 565-733 (1018)
123 KOG2076 RNA polymerase III tra 97.1 0.016 3.4E-07 47.4 11.3 149 15-167 385-543 (895)
124 KOG2076 RNA polymerase III tra 97.0 0.037 8E-07 45.4 13.1 127 12-142 419-553 (895)
125 PF03704 BTAD: Bacterial trans 97.0 0.0042 9.2E-08 40.2 6.7 98 17-118 16-139 (146)
126 KOG3081 Vesicle coat complex C 97.0 0.027 5.8E-07 40.1 10.8 124 14-144 144-271 (299)
127 KOG3941 Intermediate in Toll s 97.0 0.017 3.8E-07 41.5 9.9 102 40-143 64-187 (406)
128 KOG0985 Vesicle coat protein c 97.0 0.02 4.2E-07 48.0 11.0 130 15-169 1056-1185(1666)
129 PF05843 Suf: Suppressor of fo 96.9 0.0058 1.3E-07 44.2 7.5 118 44-166 2-123 (280)
130 COG4783 Putative Zn-dependent 96.9 0.023 4.9E-07 43.6 10.4 118 45-169 309-427 (484)
131 KOG0547 Translocase of outer m 96.8 0.019 4.1E-07 44.2 9.4 123 14-142 435-564 (606)
132 KOG3941 Intermediate in Toll s 96.8 0.01 2.2E-07 42.7 7.5 85 19-104 84-185 (406)
133 KOG1914 mRNA cleavage and poly 96.8 0.08 1.7E-06 41.4 12.6 152 6-160 364-520 (656)
134 PF12688 TPR_5: Tetratrico pep 96.8 0.057 1.2E-06 33.9 11.1 108 51-162 9-118 (120)
135 PRK15363 pathogenicity island 96.8 0.039 8.5E-07 36.2 9.6 87 53-143 45-131 (157)
136 KOG3616 Selective LIM binding 96.8 0.02 4.3E-07 46.5 9.6 105 49-168 738-842 (1636)
137 PF13432 TPR_16: Tetratricopep 96.8 0.0085 1.9E-07 32.9 5.8 53 52-105 6-58 (65)
138 PF13432 TPR_16: Tetratricopep 96.7 0.0089 1.9E-07 32.8 5.7 55 15-71 5-59 (65)
139 KOG4340 Uncharacterized conser 96.7 0.1 2.2E-06 38.1 11.8 150 13-167 150-327 (459)
140 PF04840 Vps16_C: Vps16, C-ter 96.7 0.083 1.8E-06 39.0 11.8 106 13-141 183-288 (319)
141 PF07035 Mic1: Colon cancer-as 96.7 0.096 2.1E-06 34.9 12.5 101 27-141 14-115 (167)
142 KOG0985 Vesicle coat protein c 96.6 0.076 1.6E-06 44.7 12.2 117 5-139 1101-1218(1666)
143 KOG1070 rRNA processing protei 96.6 0.12 2.5E-06 44.8 13.4 131 8-143 1458-1592(1710)
144 KOG3060 Uncharacterized conser 96.6 0.14 3E-06 36.4 11.8 120 14-143 59-182 (289)
145 COG4235 Cytochrome c biogenesi 96.6 0.078 1.7E-06 38.3 11.0 99 42-144 155-256 (287)
146 KOG2796 Uncharacterized conser 96.6 0.12 2.6E-06 37.0 11.5 140 9-154 179-323 (366)
147 PRK10803 tol-pal system protei 96.6 0.09 2E-06 37.8 11.1 100 45-144 145-246 (263)
148 PF13414 TPR_11: TPR repeat; P 96.6 0.0097 2.1E-07 33.1 5.1 59 44-103 4-63 (69)
149 KOG1128 Uncharacterized conser 96.5 0.02 4.4E-07 45.9 8.1 56 10-68 426-482 (777)
150 KOG1125 TPR repeat-containing 96.5 0.087 1.9E-06 41.3 11.2 146 18-167 405-559 (579)
151 smart00299 CLH Clathrin heavy 96.5 0.11 2.3E-06 33.3 12.8 124 13-162 13-137 (140)
152 PF13414 TPR_11: TPR repeat; P 96.4 0.026 5.6E-07 31.3 6.3 62 78-142 3-65 (69)
153 KOG2053 Mitochondrial inherita 96.4 0.11 2.5E-06 42.8 11.8 138 14-161 16-155 (932)
154 PRK10153 DNA-binding transcrip 96.4 0.35 7.5E-06 38.3 14.8 138 6-152 335-488 (517)
155 PRK15363 pathogenicity island 96.3 0.15 3.3E-06 33.5 11.7 93 11-106 39-131 (157)
156 PF00637 Clathrin: Region in C 96.3 0.014 2.9E-07 37.7 5.4 129 13-166 13-141 (143)
157 KOG1915 Cell cycle control pro 96.3 0.2 4.4E-06 38.8 11.9 120 14-141 114-233 (677)
158 KOG3785 Uncharacterized conser 96.3 0.062 1.4E-06 40.0 9.0 120 19-144 371-490 (557)
159 PRK10153 DNA-binding transcrip 96.3 0.16 3.4E-06 40.2 11.8 128 37-169 331-472 (517)
160 PF13371 TPR_9: Tetratricopept 96.2 0.02 4.4E-07 32.1 5.1 53 87-142 4-56 (73)
161 KOG4340 Uncharacterized conser 96.1 0.069 1.5E-06 38.9 8.2 84 57-147 126-210 (459)
162 PF13424 TPR_12: Tetratricopep 96.1 0.018 4E-07 32.8 4.6 62 79-141 6-72 (78)
163 PF13371 TPR_9: Tetratricopept 96.1 0.028 6.2E-07 31.5 5.3 52 53-105 5-56 (73)
164 KOG3060 Uncharacterized conser 96.0 0.33 7.2E-06 34.6 11.3 123 17-145 96-221 (289)
165 KOG4570 Uncharacterized conser 96.0 0.35 7.7E-06 35.6 11.6 127 13-145 25-165 (418)
166 PRK14720 transcript cleavage f 96.0 0.3 6.4E-06 41.1 12.4 127 8-143 31-177 (906)
167 PF13929 mRNA_stabil: mRNA sta 96.0 0.39 8.6E-06 34.8 11.9 141 20-163 141-291 (292)
168 PRK10803 tol-pal system protei 95.9 0.22 4.8E-06 35.8 10.4 97 8-107 143-246 (263)
169 PLN02789 farnesyltranstransfer 95.9 0.48 1E-05 35.1 14.9 140 13-160 43-186 (320)
170 COG5107 RNA14 Pre-mRNA 3'-end 95.8 0.082 1.8E-06 40.6 8.0 143 13-161 403-546 (660)
171 KOG2047 mRNA splicing factor [ 95.8 0.52 1.1E-05 38.0 12.4 142 14-161 109-292 (835)
172 KOG3616 Selective LIM binding 95.8 0.053 1.1E-06 44.2 7.2 108 14-137 739-846 (1636)
173 COG3629 DnrI DNA-binding trans 95.8 0.18 3.8E-06 36.5 9.2 79 78-159 153-236 (280)
174 COG5107 RNA14 Pre-mRNA 3'-end 95.8 0.56 1.2E-05 36.3 12.1 116 43-166 397-518 (660)
175 PF13424 TPR_12: Tetratricopep 95.7 0.032 7E-07 31.8 4.6 60 45-104 7-72 (78)
176 PF10602 RPN7: 26S proteasome 95.6 0.37 8E-06 32.5 9.9 58 45-102 38-97 (177)
177 KOG3785 Uncharacterized conser 95.5 0.32 6.9E-06 36.5 9.8 81 58-142 374-455 (557)
178 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.4 8.6E-06 37.0 10.7 62 43-106 75-140 (453)
179 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.21 4.5E-06 38.5 9.1 66 75-144 72-141 (453)
180 PRK10866 outer membrane biogen 95.5 0.59 1.3E-05 33.2 13.6 159 9-169 34-231 (243)
181 PRK14720 transcript cleavage f 95.5 0.59 1.3E-05 39.4 12.3 87 12-103 88-174 (906)
182 KOG1915 Cell cycle control pro 95.4 0.94 2E-05 35.4 12.4 123 18-145 415-537 (677)
183 PF13762 MNE1: Mitochondrial s 95.4 0.41 9E-06 31.1 9.3 91 35-127 29-127 (145)
184 KOG0553 TPR repeat-containing 95.3 0.27 6E-06 35.6 8.8 88 16-107 90-178 (304)
185 KOG2376 Signal recognition par 95.2 0.67 1.4E-05 36.9 11.2 121 11-145 16-140 (652)
186 PF13929 mRNA_stabil: mRNA sta 95.1 0.73 1.6E-05 33.4 10.5 110 13-124 170-287 (292)
187 COG4235 Cytochrome c biogenesi 95.0 0.92 2E-05 33.0 11.2 116 3-123 151-268 (287)
188 cd00923 Cyt_c_Oxidase_Va Cytoc 95.0 0.4 8.7E-06 28.8 7.7 48 58-105 22-69 (103)
189 COG3629 DnrI DNA-binding trans 95.0 0.43 9.3E-06 34.6 9.0 78 45-125 155-237 (280)
190 KOG0495 HAT repeat protein [RN 95.0 1.3 2.9E-05 36.0 12.3 145 14-168 625-771 (913)
191 PF13512 TPR_18: Tetratricopep 94.9 0.55 1.2E-05 30.4 8.6 87 6-92 9-96 (142)
192 KOG4570 Uncharacterized conser 94.9 0.18 3.9E-06 37.1 6.9 93 13-107 70-164 (418)
193 KOG0553 TPR repeat-containing 94.9 0.57 1.2E-05 34.1 9.4 102 54-161 92-193 (304)
194 PF02284 COX5A: Cytochrome c o 94.9 0.17 3.6E-06 30.7 5.7 47 60-106 27-73 (108)
195 KOG1173 Anaphase-promoting com 94.8 0.48 1.1E-05 37.4 9.4 114 7-126 413-533 (611)
196 PF00637 Clathrin: Region in C 94.6 0.027 5.8E-07 36.3 2.2 88 47-143 11-98 (143)
197 KOG0547 Translocase of outer m 94.6 0.59 1.3E-05 36.5 9.3 126 13-144 366-491 (606)
198 PF14938 SNAP: Soluble NSF att 94.6 1.2 2.7E-05 32.2 11.3 142 18-161 85-246 (282)
199 smart00299 CLH Clathrin heavy 94.5 0.73 1.6E-05 29.4 9.6 87 45-141 9-95 (140)
200 PF13762 MNE1: Mitochondrial s 94.5 0.79 1.7E-05 29.8 10.0 99 68-166 27-131 (145)
201 KOG4162 Predicted calmodulin-b 94.5 1.3 2.8E-05 36.3 11.4 128 10-143 652-782 (799)
202 KOG2053 Mitochondrial inherita 94.5 0.48 1E-05 39.4 9.1 97 5-105 39-141 (932)
203 PRK15331 chaperone protein Sic 94.4 0.52 1.1E-05 31.3 7.7 84 56-143 50-133 (165)
204 PRK04841 transcriptional regul 94.3 0.93 2E-05 38.3 11.1 127 16-143 461-601 (903)
205 KOG1156 N-terminal acetyltrans 94.3 2.1 4.5E-05 34.6 11.8 101 5-109 366-470 (700)
206 KOG1128 Uncharacterized conser 94.2 0.9 2E-05 37.0 9.9 88 52-144 528-616 (777)
207 PF14938 SNAP: Soluble NSF att 94.2 0.45 9.8E-06 34.5 8.0 129 13-145 41-185 (282)
208 KOG1156 N-terminal acetyltrans 94.2 1.5 3.3E-05 35.3 11.0 102 40-146 366-470 (700)
209 KOG3617 WD40 and TPR repeat-co 94.1 0.71 1.5E-05 38.5 9.3 118 8-140 757-883 (1416)
210 COG3898 Uncharacterized membra 94.0 2.1 4.6E-05 32.7 11.3 128 19-150 132-298 (531)
211 cd08819 CARD_MDA5_2 Caspase ac 94.0 0.72 1.6E-05 27.1 7.0 68 61-136 20-87 (88)
212 PF13525 YfiO: Outer membrane 93.8 1.4 3.1E-05 30.2 9.7 159 8-167 6-195 (203)
213 cd00923 Cyt_c_Oxidase_Va Cytoc 93.8 0.52 1.1E-05 28.3 6.1 64 93-159 22-85 (103)
214 PF07163 Pex26: Pex26 protein; 93.8 0.75 1.6E-05 33.3 8.0 87 50-138 90-181 (309)
215 KOG1174 Anaphase-promoting com 93.6 2.6 5.6E-05 32.5 11.1 148 14-168 203-386 (564)
216 PRK04841 transcriptional regul 93.6 1.9 4.2E-05 36.4 11.7 130 13-143 497-640 (903)
217 PF07163 Pex26: Pex26 protein; 93.5 1.1 2.3E-05 32.6 8.4 87 14-102 90-182 (309)
218 PF10300 DUF3808: Protein of u 93.5 3 6.4E-05 32.8 13.6 144 13-160 194-349 (468)
219 PF02284 COX5A: Cytochrome c o 93.5 0.72 1.6E-05 28.0 6.4 63 94-159 26-88 (108)
220 PF13176 TPR_7: Tetratricopept 93.5 0.14 3E-06 24.5 3.0 26 117-142 1-26 (36)
221 PF09205 DUF1955: Domain of un 93.5 1.3 2.8E-05 28.5 8.6 60 84-146 92-151 (161)
222 COG4105 ComL DNA uptake lipopr 93.3 2.1 4.6E-05 30.6 14.9 161 6-169 33-223 (254)
223 PRK15331 chaperone protein Sic 93.3 1 2.2E-05 30.0 7.5 92 12-106 42-133 (165)
224 PF04184 ST7: ST7 protein; In 93.2 1.5 3.2E-05 34.4 9.3 81 48-129 264-345 (539)
225 PF13170 DUF4003: Protein of u 93.1 2.7 5.8E-05 30.9 13.3 119 22-144 118-250 (297)
226 PF10602 RPN7: 26S proteasome 93.0 0.7 1.5E-05 31.1 6.7 68 78-145 36-103 (177)
227 PF13176 TPR_7: Tetratricopept 93.0 0.23 5E-06 23.7 3.3 25 80-104 1-25 (36)
228 KOG2376 Signal recognition par 92.9 4.2 9E-05 32.7 13.8 138 22-163 356-505 (652)
229 COG4700 Uncharacterized protei 92.5 2.4 5.2E-05 29.1 11.7 127 12-143 94-225 (251)
230 PF13512 TPR_18: Tetratricopep 92.4 1.9 4E-05 28.0 7.7 83 44-129 12-96 (142)
231 KOG2796 Uncharacterized conser 92.3 1.5 3.3E-05 31.7 7.7 97 46-144 180-281 (366)
232 KOG1174 Anaphase-promoting com 92.0 3.8 8.3E-05 31.6 9.9 122 14-142 341-498 (564)
233 PF13428 TPR_14: Tetratricopep 91.6 0.54 1.2E-05 23.5 3.8 17 87-103 10-26 (44)
234 PF13428 TPR_14: Tetratricopep 91.5 0.99 2.2E-05 22.5 4.8 28 45-72 3-30 (44)
235 KOG0548 Molecular co-chaperone 91.5 5.9 0.00013 31.3 10.8 141 15-162 306-471 (539)
236 PF13374 TPR_10: Tetratricopep 90.9 0.6 1.3E-05 22.5 3.6 28 116-143 3-30 (42)
237 PF04053 Coatomer_WDAD: Coatom 90.9 1.2 2.5E-05 34.7 6.6 103 13-145 301-403 (443)
238 PF13374 TPR_10: Tetratricopep 90.6 0.69 1.5E-05 22.3 3.7 28 78-105 2-29 (42)
239 KOG1585 Protein required for f 90.5 5 0.00011 28.8 9.1 123 13-138 97-250 (308)
240 PF11207 DUF2989: Protein of u 89.9 4.9 0.00011 27.7 8.9 78 54-135 118-198 (203)
241 PF09205 DUF1955: Domain of un 89.8 3.1 6.8E-05 26.8 6.7 85 18-109 67-151 (161)
242 PF11848 DUF3368: Domain of un 89.7 1.6 3.5E-05 22.4 4.6 34 126-159 13-46 (48)
243 COG4455 ImpE Protein of avirul 89.7 3.2 6.9E-05 29.2 7.1 79 45-124 3-81 (273)
244 KOG0548 Molecular co-chaperone 89.5 7.4 0.00016 30.8 9.7 104 15-125 10-114 (539)
245 PF11846 DUF3366: Domain of un 89.4 2.4 5.2E-05 28.8 6.7 31 75-105 141-171 (193)
246 KOG0543 FKBP-type peptidyl-pro 89.4 8 0.00017 29.6 10.0 125 14-143 215-354 (397)
247 COG1729 Uncharacterized protei 89.2 6.5 0.00014 28.3 9.1 97 45-144 144-244 (262)
248 KOG4162 Predicted calmodulin-b 89.0 9.6 0.00021 31.6 10.3 135 19-157 239-399 (799)
249 PF04053 Coatomer_WDAD: Coatom 89.0 3.3 7.2E-05 32.3 7.7 107 14-142 268-374 (443)
250 PF10300 DUF3808: Protein of u 88.9 10 0.00022 29.9 11.3 117 20-142 246-374 (468)
251 PF07721 TPR_4: Tetratricopept 88.7 0.98 2.1E-05 19.7 2.9 20 83-102 6-25 (26)
252 PF11846 DUF3366: Domain of un 88.7 2.9 6.2E-05 28.4 6.6 56 17-72 118-173 (193)
253 PF07079 DUF1347: Protein of u 88.7 10 0.00022 29.8 11.2 143 17-162 16-179 (549)
254 KOG1125 TPR repeat-containing 88.2 12 0.00026 30.0 13.4 84 58-144 409-493 (579)
255 PF11207 DUF2989: Protein of u 88.2 6.7 0.00015 27.1 8.2 78 88-169 117-197 (203)
256 KOG1127 TPR repeat-containing 88.1 7 0.00015 33.6 9.2 61 77-142 595-657 (1238)
257 COG1729 Uncharacterized protei 88.0 8.1 0.00018 27.9 9.6 97 10-107 144-244 (262)
258 PF10366 Vps39_1: Vacuolar sor 87.6 4.6 0.0001 24.8 6.4 27 117-143 41-67 (108)
259 KOG2280 Vacuolar assembly/sort 87.6 5.1 0.00011 33.1 8.0 105 13-139 690-794 (829)
260 PF11848 DUF3368: Domain of un 87.3 2 4.4E-05 22.1 4.0 32 18-50 13-44 (48)
261 KOG2280 Vacuolar assembly/sort 87.2 6.5 0.00014 32.5 8.4 102 28-141 669-770 (829)
262 KOG4077 Cytochrome c oxidase, 87.1 2.5 5.5E-05 26.9 4.9 47 60-106 66-112 (149)
263 COG4700 Uncharacterized protei 86.8 8.1 0.00018 26.6 13.0 108 36-144 82-189 (251)
264 PF13281 DUF4071: Domain of un 86.7 12 0.00027 28.5 11.1 80 82-161 145-228 (374)
265 KOG0543 FKBP-type peptidyl-pro 86.4 12 0.00027 28.6 9.0 104 52-160 217-334 (397)
266 PF07079 DUF1347: Protein of u 86.3 6.7 0.00015 30.7 7.7 111 13-128 52-180 (549)
267 PF13281 DUF4071: Domain of un 86.1 13 0.00029 28.3 13.2 129 14-145 186-335 (374)
268 PF13431 TPR_17: Tetratricopep 85.8 1.5 3.2E-05 20.6 2.8 22 77-98 12-33 (34)
269 KOG1538 Uncharacterized conser 85.8 7.9 0.00017 31.8 8.1 92 42-146 746-848 (1081)
270 PF04184 ST7: ST7 protein; In 85.7 11 0.00024 29.9 8.6 76 13-89 265-342 (539)
271 KOG1127 TPR repeat-containing 85.6 15 0.00032 31.8 9.8 50 90-142 574-623 (1238)
272 PF09613 HrpB1_HrpK: Bacterial 85.5 8.5 0.00018 25.5 9.0 57 14-72 17-73 (160)
273 PF11663 Toxin_YhaV: Toxin wit 85.3 1.2 2.6E-05 28.5 2.9 30 56-87 108-137 (140)
274 PF13525 YfiO: Outer membrane 85.1 10 0.00022 26.0 9.5 126 8-134 43-197 (203)
275 PF10579 Rapsyn_N: Rapsyn N-te 85.0 3.4 7.4E-05 23.9 4.4 46 19-65 18-65 (80)
276 KOG3617 WD40 and TPR repeat-co 84.8 13 0.00028 31.6 9.0 107 14-139 735-850 (1416)
277 cd07153 Fur_like Ferric uptake 84.3 2.1 4.6E-05 26.3 3.8 48 121-168 6-53 (116)
278 TIGR02561 HrpB1_HrpK type III 84.2 9.4 0.0002 25.1 7.5 19 89-107 55-73 (153)
279 COG3118 Thioredoxin domain-con 84.1 14 0.00031 27.1 11.7 141 14-162 141-284 (304)
280 PRK10564 maltose regulon perip 84.0 2.7 5.9E-05 30.8 4.6 47 112-158 253-300 (303)
281 COG4455 ImpE Protein of avirul 83.9 9.8 0.00021 26.9 7.0 119 13-139 7-128 (273)
282 PF12926 MOZART2: Mitotic-spin 83.8 6.4 0.00014 23.2 5.2 43 64-106 29-71 (88)
283 PLN02789 farnesyltranstransfer 83.6 16 0.00035 27.2 15.0 147 9-162 72-229 (320)
284 KOG2610 Uncharacterized conser 83.3 18 0.00038 27.4 9.8 133 5-140 134-272 (491)
285 COG4105 ComL DNA uptake lipopr 82.6 15 0.00032 26.4 7.7 52 55-106 46-99 (254)
286 PF00515 TPR_1: Tetratricopept 82.2 3.6 7.9E-05 18.8 3.6 26 117-142 3-28 (34)
287 KOG0624 dsRNA-activated protei 81.8 21 0.00045 27.2 12.1 21 13-33 44-64 (504)
288 KOG4077 Cytochrome c oxidase, 81.7 11 0.00024 24.1 6.7 58 27-86 69-126 (149)
289 COG4649 Uncharacterized protei 81.7 14 0.0003 25.2 13.2 131 17-150 68-202 (221)
290 KOG2610 Uncharacterized conser 81.6 21 0.00045 27.1 9.9 116 20-140 116-234 (491)
291 TIGR03504 FimV_Cterm FimV C-te 81.6 4.3 9.3E-05 20.5 3.6 24 122-145 6-29 (44)
292 TIGR03504 FimV_Cterm FimV C-te 81.0 4.5 9.8E-05 20.4 3.5 19 52-70 8-26 (44)
293 PRK10866 outer membrane biogen 80.8 18 0.00038 25.8 12.7 131 11-142 73-239 (243)
294 KOG0276 Vesicle coat complex C 80.7 25 0.00053 28.8 8.9 22 119-140 725-746 (794)
295 KOG2114 Vacuolar assembly/sort 79.6 28 0.00061 29.5 9.2 82 16-105 377-458 (933)
296 PRK14956 DNA polymerase III su 79.3 30 0.00065 27.5 12.0 102 25-152 184-285 (484)
297 COG0735 Fur Fe2+/Zn2+ uptake r 79.0 3.7 8E-05 26.7 3.6 44 65-109 8-51 (145)
298 PRK15180 Vi polysaccharide bio 78.2 29 0.00064 27.7 8.5 117 19-142 301-418 (831)
299 KOG2041 WD40 repeat protein [G 78.1 12 0.00027 31.1 6.7 70 40-109 689-765 (1189)
300 PRK11639 zinc uptake transcrip 77.8 3.8 8.3E-05 27.4 3.5 63 67-132 15-77 (169)
301 PF09613 HrpB1_HrpK: Bacterial 77.6 18 0.00039 24.0 11.6 63 44-108 8-74 (160)
302 PF03745 DUF309: Domain of unk 76.9 10 0.00022 20.7 4.8 46 55-100 11-61 (62)
303 KOG0495 HAT repeat protein [RN 76.0 45 0.00097 27.8 14.8 101 45-152 586-686 (913)
304 cd08326 CARD_CASP9 Caspase act 75.5 14 0.0003 21.6 5.4 64 62-135 18-81 (84)
305 cd00280 TRFH Telomeric Repeat 75.4 23 0.0005 24.2 7.2 19 87-105 120-138 (200)
306 PF11663 Toxin_YhaV: Toxin wit 74.7 2.7 5.9E-05 26.9 2.0 29 92-124 109-137 (140)
307 PF04097 Nic96: Nup93/Nic96; 74.6 47 0.001 27.3 10.9 77 6-84 110-196 (613)
308 PRK09462 fur ferric uptake reg 74.5 10 0.00022 24.6 4.8 59 68-129 7-66 (148)
309 PF07719 TPR_2: Tetratricopept 74.4 6.8 0.00015 17.6 3.6 21 83-103 6-26 (34)
310 COG0735 Fur Fe2+/Zn2+ uptake r 74.4 21 0.00045 23.2 7.1 63 28-93 7-70 (145)
311 COG3898 Uncharacterized membra 73.9 40 0.00086 26.2 10.8 123 20-150 97-224 (531)
312 PF10579 Rapsyn_N: Rapsyn N-te 73.9 15 0.00032 21.3 5.0 46 55-100 18-65 (80)
313 KOG2047 mRNA splicing factor [ 73.5 52 0.0011 27.4 13.6 148 8-157 387-591 (835)
314 KOG4648 Uncharacterized conser 73.4 6.5 0.00014 29.7 3.9 79 53-143 107-186 (536)
315 PF08311 Mad3_BUB1_I: Mad3/BUB 73.2 21 0.00044 22.6 9.0 43 61-103 81-124 (126)
316 PF01475 FUR: Ferric uptake re 73.2 2.5 5.4E-05 26.3 1.6 49 120-168 12-60 (120)
317 PF07035 Mic1: Colon cancer-as 72.9 25 0.00055 23.5 12.7 123 6-145 27-150 (167)
318 PF12926 MOZART2: Mitotic-spin 72.7 17 0.00037 21.4 7.4 43 28-71 29-71 (88)
319 PF13181 TPR_8: Tetratricopept 72.4 7.9 0.00017 17.5 3.5 26 117-142 3-28 (34)
320 COG5108 RPO41 Mitochondrial DN 72.0 31 0.00067 28.7 7.5 93 48-143 33-131 (1117)
321 PF09454 Vps23_core: Vps23 cor 71.7 15 0.00032 20.3 4.5 50 40-90 5-54 (65)
322 cd08789 CARD_IPS-1_RIG-I Caspa 71.5 18 0.00038 21.1 5.8 51 78-135 32-82 (84)
323 PF07575 Nucleopor_Nup85: Nup8 71.1 14 0.00031 29.8 5.8 117 41-159 403-539 (566)
324 PRK11639 zinc uptake transcrip 71.1 28 0.00061 23.2 7.1 64 30-95 14-77 (169)
325 KOG4555 TPR repeat-containing 71.1 26 0.00056 22.8 8.2 103 52-157 52-167 (175)
326 PF14689 SPOB_a: Sensor_kinase 70.9 6.6 0.00014 21.4 2.8 23 120-142 28-50 (62)
327 COG5108 RPO41 Mitochondrial DN 70.3 61 0.0013 27.2 8.7 94 12-106 33-131 (1117)
328 PF14669 Asp_Glu_race_2: Putat 69.8 16 0.00035 25.2 4.9 24 116-139 182-205 (233)
329 PF08631 SPO22: Meiosis protei 69.5 40 0.00087 24.4 14.4 63 79-144 85-150 (278)
330 COG3947 Response regulator con 69.4 44 0.00096 24.9 7.2 71 80-153 281-356 (361)
331 PHA02875 ankyrin repeat protei 68.8 42 0.0009 25.7 7.7 18 85-102 72-89 (413)
332 PF02847 MA3: MA3 domain; Int 68.0 25 0.00053 21.4 6.4 65 10-77 5-71 (113)
333 PF02847 MA3: MA3 domain; Int 67.3 25 0.00055 21.3 5.3 22 48-69 7-28 (113)
334 KOG0624 dsRNA-activated protei 66.4 57 0.0012 25.0 13.0 126 14-144 113-252 (504)
335 PF13934 ELYS: Nuclear pore co 66.3 43 0.00094 23.6 8.4 104 45-161 78-183 (226)
336 KOG2214 Predicted esterase of 65.9 40 0.00086 26.9 6.8 118 35-153 197-353 (543)
337 KOG4567 GTPase-activating prot 65.3 22 0.00047 26.5 5.1 58 98-162 263-320 (370)
338 PF11817 Foie-gras_1: Foie gra 65.2 45 0.00097 23.7 6.7 57 84-141 184-244 (247)
339 KOG2114 Vacuolar assembly/sort 65.1 76 0.0016 27.2 8.5 114 14-142 341-458 (933)
340 PRK09857 putative transposase; 65.1 53 0.0012 24.2 7.4 88 58-149 187-274 (292)
341 COG2137 OraA Uncharacterized p 64.9 40 0.00088 22.8 9.1 28 64-91 56-83 (174)
342 cd08819 CARD_MDA5_2 Caspase ac 64.9 27 0.00058 20.7 6.5 68 25-99 20-87 (88)
343 TIGR02508 type_III_yscG type I 64.5 31 0.00066 21.2 9.6 88 58-155 20-107 (115)
344 KOG3807 Predicted membrane pro 64.2 32 0.00069 26.1 5.8 86 2-87 267-357 (556)
345 PRK11906 transcriptional regul 64.0 71 0.0015 25.3 13.6 138 22-163 273-421 (458)
346 PF14669 Asp_Glu_race_2: Putat 63.9 13 0.00029 25.6 3.6 27 83-109 137-163 (233)
347 KOG2908 26S proteasome regulat 63.7 59 0.0013 24.6 7.1 86 48-135 80-177 (380)
348 KOG0403 Neoplastic transformat 62.8 40 0.00086 26.7 6.2 62 81-145 512-573 (645)
349 KOG4555 TPR repeat-containing 62.5 40 0.00087 21.9 8.8 94 14-109 50-146 (175)
350 PF11817 Foie-gras_1: Foie gra 62.4 54 0.0012 23.3 7.0 60 45-104 180-244 (247)
351 PF11838 ERAP1_C: ERAP1-like C 62.4 59 0.0013 23.8 13.8 131 22-161 145-286 (324)
352 cd00280 TRFH Telomeric Repeat 62.4 43 0.00093 23.0 5.7 49 94-144 85-140 (200)
353 smart00028 TPR Tetratricopepti 62.0 12 0.00025 15.6 2.5 26 117-142 3-28 (34)
354 cd07153 Fur_like Ferric uptake 61.7 18 0.00038 22.1 3.8 45 50-94 7-51 (116)
355 PF13174 TPR_6: Tetratricopept 61.6 14 0.0003 16.3 3.0 16 55-70 12-27 (33)
356 cd08332 CARD_CASP2 Caspase act 61.2 32 0.00069 20.3 7.1 63 62-134 22-84 (90)
357 cd08326 CARD_CASP9 Caspase act 61.1 31 0.00067 20.1 4.5 59 97-165 18-76 (84)
358 COG2405 Predicted nucleic acid 61.1 20 0.00044 23.3 3.8 43 117-160 112-154 (157)
359 PF09477 Type_III_YscG: Bacter 61.0 37 0.00081 21.0 8.0 79 58-145 21-99 (116)
360 PRK10564 maltose regulon perip 60.9 23 0.00049 26.2 4.5 36 41-76 254-290 (303)
361 PF10366 Vps39_1: Vacuolar sor 60.8 37 0.00079 20.9 7.0 27 80-106 41-67 (108)
362 COG0819 TenA Putative transcri 60.3 57 0.0012 22.9 6.3 90 70-161 101-201 (218)
363 smart00804 TAP_C C-terminal do 59.6 12 0.00025 20.6 2.3 17 92-108 39-55 (63)
364 COG3947 Response regulator con 59.6 39 0.00084 25.1 5.5 59 45-104 281-339 (361)
365 cd08812 CARD_RIG-I_like Caspas 59.4 34 0.00074 20.1 6.1 38 91-134 47-85 (88)
366 KOG2297 Predicted translation 59.1 75 0.0016 23.9 7.9 45 13-57 189-237 (412)
367 TIGR02561 HrpB1_HrpK type III 58.4 51 0.0011 21.8 9.4 54 18-73 21-74 (153)
368 TIGR03581 EF_0839 conserved hy 58.0 39 0.00085 23.8 5.0 82 23-105 137-235 (236)
369 TIGR02508 type_III_yscG type I 57.8 42 0.00091 20.6 5.9 80 22-109 20-99 (115)
370 cd07229 Pat_TGL3_like Triacylg 57.6 88 0.0019 24.2 8.5 62 71-132 179-254 (391)
371 PF10475 DUF2450: Protein of u 57.1 28 0.0006 25.5 4.6 28 78-105 127-154 (291)
372 COG2812 DnaX DNA polymerase II 57.0 1E+02 0.0022 24.9 8.4 86 24-115 181-280 (515)
373 PF08631 SPO22: Meiosis protei 56.9 73 0.0016 23.1 13.5 136 9-150 37-192 (278)
374 smart00544 MA3 Domain in DAP-5 56.7 43 0.00092 20.3 8.7 24 47-70 6-29 (113)
375 PF12796 Ank_2: Ankyrin repeat 56.6 35 0.00076 19.4 5.7 19 84-102 29-47 (89)
376 KOG0550 Molecular chaperone (D 56.5 43 0.00093 26.1 5.5 118 19-144 215-350 (486)
377 KOG2063 Vacuolar assembly/sort 55.4 1.4E+02 0.003 25.9 8.9 118 45-162 506-638 (877)
378 COG2178 Predicted RNA-binding 55.1 68 0.0015 22.2 7.2 97 46-143 32-149 (204)
379 TIGR01529 argR_whole arginine 55.1 28 0.00061 22.7 3.9 37 122-158 7-43 (146)
380 KOG0403 Neoplastic transformat 53.9 89 0.0019 24.9 6.8 77 46-129 512-588 (645)
381 PF04124 Dor1: Dor1-like famil 52.9 20 0.00043 26.9 3.4 35 13-47 112-146 (338)
382 PRK07003 DNA polymerase III su 52.9 1.5E+02 0.0032 25.5 10.9 83 24-109 181-276 (830)
383 PF01475 FUR: Ferric uptake re 52.2 20 0.00042 22.2 2.8 45 49-93 13-57 (120)
384 smart00777 Mad3_BUB1_I Mad3/BU 51.6 61 0.0013 20.6 8.5 41 62-102 82-123 (125)
385 PRK09462 fur ferric uptake reg 51.4 64 0.0014 20.8 7.4 62 31-94 6-68 (148)
386 COG2405 Predicted nucleic acid 51.0 41 0.00088 21.9 4.0 42 80-124 112-153 (157)
387 PF04090 RNA_pol_I_TF: RNA pol 50.7 82 0.0018 21.8 6.3 28 45-72 43-70 (199)
388 KOG1538 Uncharacterized conser 50.5 54 0.0012 27.3 5.4 59 43-104 598-658 (1081)
389 smart00638 LPD_N Lipoprotein N 50.3 1.4E+02 0.003 24.3 13.6 149 10-166 312-476 (574)
390 TIGR03236 dnd_assoc_1 dnd syst 49.8 56 0.0012 24.9 5.2 49 48-96 301-349 (363)
391 PHA02875 ankyrin repeat protei 48.8 1E+02 0.0023 23.5 6.8 15 87-101 141-155 (413)
392 PF11838 ERAP1_C: ERAP1-like C 48.7 1E+02 0.0023 22.5 13.9 87 59-150 146-237 (324)
393 KOG3636 Uncharacterized conser 48.7 1.4E+02 0.003 23.8 8.8 110 16-127 148-272 (669)
394 PF09868 DUF2095: Uncharacteri 48.6 66 0.0014 20.1 5.0 24 50-73 68-91 (128)
395 PRK08691 DNA polymerase III su 48.4 1.7E+02 0.0037 24.8 11.5 83 24-109 181-276 (709)
396 PRK14963 DNA polymerase III su 48.4 1.4E+02 0.0031 24.0 10.2 86 24-114 178-275 (504)
397 cd08780 Death_TRADD Death Doma 47.0 60 0.0013 19.2 5.4 54 45-101 34-88 (90)
398 PF12862 Apc5: Anaphase-promot 47.0 59 0.0013 19.1 5.2 19 53-71 51-69 (94)
399 cd08323 CARD_APAF1 Caspase act 46.9 59 0.0013 19.1 7.3 65 62-136 16-80 (86)
400 KOG0890 Protein kinase of the 46.8 1.8E+02 0.004 28.3 8.5 113 15-136 1391-1504(2382)
401 PF02631 RecX: RecX family; I 45.7 72 0.0016 19.7 8.3 107 24-139 9-117 (121)
402 PRK14958 DNA polymerase III su 45.6 1.6E+02 0.0035 23.7 10.9 83 27-114 184-279 (509)
403 KOG2041 WD40 repeat protein [G 45.6 1.9E+02 0.0042 24.7 8.0 114 20-138 747-875 (1189)
404 KOG0276 Vesicle coat complex C 45.3 1.7E+02 0.0037 24.4 7.3 54 46-105 695-748 (794)
405 PRK10292 hypothetical protein; 45.2 53 0.0012 18.1 3.6 28 140-167 24-51 (69)
406 KOG4234 TPR repeat-containing 44.8 1.1E+02 0.0024 21.6 8.2 81 55-142 107-195 (271)
407 KOG1585 Protein required for f 44.0 1.3E+02 0.0027 22.0 8.4 118 44-161 92-239 (308)
408 KOG1550 Extracellular protein 44.0 1.8E+02 0.0038 23.7 13.9 124 14-145 255-394 (552)
409 PF09797 NatB_MDM20: N-acetylt 43.8 1.2E+02 0.0026 22.9 6.4 67 14-82 187-256 (365)
410 KOG2063 Vacuolar assembly/sort 43.7 1.4E+02 0.0031 25.9 7.0 115 10-127 506-638 (877)
411 PRK14951 DNA polymerase III su 43.5 1.9E+02 0.0041 24.0 11.2 83 24-109 186-281 (618)
412 KOG2422 Uncharacterized conser 43.4 1.9E+02 0.0041 23.9 7.6 80 50-129 349-429 (665)
413 PF09868 DUF2095: Uncharacteri 43.1 62 0.0014 20.3 3.8 26 84-109 67-92 (128)
414 PF11123 DNA_Packaging_2: DNA 42.8 65 0.0014 18.4 4.5 33 58-91 12-44 (82)
415 KOG2396 HAT (Half-A-TPR) repea 42.7 1.8E+02 0.0039 23.5 8.5 79 26-107 90-169 (568)
416 COG4649 Uncharacterized protei 42.5 1.1E+02 0.0024 21.0 9.6 95 14-109 101-198 (221)
417 PF07443 HARP: HepA-related pr 42.3 16 0.00035 19.5 1.1 33 92-126 6-38 (55)
418 KOG2908 26S proteasome regulat 42.3 1.5E+02 0.0033 22.6 7.9 83 13-96 81-175 (380)
419 PF02607 B12-binding_2: B12 bi 42.0 46 0.00099 18.6 3.1 36 56-91 14-49 (79)
420 smart00164 TBC Domain in Tre-2 41.9 94 0.002 20.9 5.1 83 22-108 108-197 (199)
421 KOG4567 GTPase-activating prot 41.1 1.6E+02 0.0034 22.3 7.7 57 27-89 263-319 (370)
422 smart00544 MA3 Domain in DAP-5 40.8 82 0.0018 19.0 8.3 61 11-74 6-68 (113)
423 TIGR01503 MthylAspMut_E methyl 40.8 88 0.0019 24.8 5.1 75 22-106 29-114 (480)
424 PF09797 NatB_MDM20: N-acetylt 40.8 1.3E+02 0.0028 22.8 6.1 69 47-118 184-255 (365)
425 PF08311 Mad3_BUB1_I: Mad3/BUB 40.6 93 0.002 19.6 8.6 62 75-140 63-124 (126)
426 PF06957 COPI_C: Coatomer (COP 40.5 1.8E+02 0.0039 22.9 10.4 128 16-163 213-349 (422)
427 COG0457 NrfG FOG: TPR repeat [ 40.2 1E+02 0.0022 19.9 13.6 90 13-104 65-156 (291)
428 KOG2297 Predicted translation 40.1 37 0.0008 25.4 2.9 71 53-135 265-341 (412)
429 smart00638 LPD_N Lipoprotein N 40.1 2E+02 0.0044 23.3 13.8 114 41-162 308-430 (574)
430 PLN02389 biotin synthase 40.1 20 0.00043 27.5 1.7 72 63-144 178-254 (379)
431 cd08330 CARD_ASC_NALP1 Caspase 39.9 76 0.0016 18.3 6.5 55 61-125 16-70 (82)
432 PF08542 Rep_fac_C: Replicatio 39.8 75 0.0016 18.2 5.9 47 43-91 5-51 (89)
433 TIGR01987 HI0074 nucleotidyltr 39.8 98 0.0021 19.6 5.5 84 22-109 4-90 (123)
434 COG1466 HolA DNA polymerase II 39.7 1.6E+02 0.0035 22.0 9.3 84 64-149 148-242 (334)
435 PF04124 Dor1: Dor1-like famil 39.1 54 0.0012 24.6 3.8 26 81-106 109-134 (338)
436 PRK14956 DNA polymerase III su 38.9 2E+02 0.0044 23.0 7.5 62 17-79 210-284 (484)
437 PF02259 FAT: FAT domain; Int 38.8 1.6E+02 0.0034 21.7 7.0 66 78-143 146-212 (352)
438 PF08461 HTH_12: Ribonuclease 38.4 70 0.0015 17.6 3.3 34 128-161 10-43 (66)
439 COG1747 Uncharacterized N-term 38.2 2.2E+02 0.0048 23.3 12.3 92 7-104 66-157 (711)
440 PRK06645 DNA polymerase III su 38.0 2.2E+02 0.0047 23.0 9.9 86 24-114 190-291 (507)
441 TIGR01914 cas_Csa4 CRISPR-asso 38.0 1.8E+02 0.0039 22.1 6.6 67 88-161 286-352 (354)
442 PF12816 Vps8: Golgi CORVET co 37.8 35 0.00077 23.4 2.5 61 3-69 18-78 (196)
443 PF13934 ELYS: Nuclear pore co 37.4 1.5E+02 0.0032 20.9 6.7 109 13-135 82-196 (226)
444 PRK14951 DNA polymerase III su 37.2 2.4E+02 0.0053 23.4 10.4 87 61-150 187-285 (618)
445 PF08780 NTase_sub_bind: Nucle 37.1 1.1E+02 0.0023 19.3 4.5 83 23-109 6-90 (124)
446 TIGR03362 VI_chp_7 type VI sec 37.0 1.5E+02 0.0032 22.1 5.7 56 15-71 221-278 (301)
447 cd01671 CARD Caspase activatio 37.0 79 0.0017 17.7 5.4 60 62-131 15-74 (80)
448 KOG4334 Uncharacterized conser 36.7 13 0.00027 29.4 0.2 76 80-163 492-573 (650)
449 PRK12928 lipoyl synthase; Prov 36.4 56 0.0012 24.0 3.5 78 63-146 153-233 (290)
450 cd08329 CARD_BIRC2_BIRC3 Caspa 36.0 97 0.0021 18.5 6.5 66 62-138 25-90 (94)
451 cd08318 Death_NMPP84 Death dom 35.8 92 0.002 18.1 3.8 40 59-101 46-86 (86)
452 KOG0687 26S proteasome regulat 35.5 2E+02 0.0043 21.9 10.8 94 45-142 106-208 (393)
453 smart00386 HAT HAT (Half-A-TPR 35.5 44 0.00095 14.3 3.8 27 58-85 2-28 (33)
454 PF14162 YozD: YozD-like prote 35.2 72 0.0016 16.7 4.0 30 132-161 12-49 (57)
455 PF10475 DUF2450: Protein of u 34.9 1.5E+02 0.0033 21.7 5.6 82 13-100 133-219 (291)
456 PRK14700 recombination factor 34.8 1.9E+02 0.0042 21.5 8.9 55 55-109 138-197 (300)
457 PF14840 DNA_pol3_delt_C: Proc 34.8 52 0.0011 20.8 2.7 27 56-82 10-36 (125)
458 PF02184 HAT: HAT (Half-A-TPR) 34.7 56 0.0012 15.3 2.5 23 58-82 2-24 (32)
459 COG3118 Thioredoxin domain-con 34.4 2E+02 0.0042 21.5 10.4 112 12-129 173-286 (304)
460 KOG1166 Mitotic checkpoint ser 34.3 92 0.002 27.3 4.7 62 90-152 90-151 (974)
461 PRK13341 recombination factor 33.8 3E+02 0.0065 23.5 13.8 49 116-165 260-308 (725)
462 COG2987 HutU Urocanate hydrata 33.7 42 0.0009 26.5 2.5 47 91-152 216-262 (561)
463 PF05664 DUF810: Protein of un 33.5 2.7E+02 0.0059 23.5 7.1 68 37-104 211-292 (677)
464 PF08424 NRDE-2: NRDE-2, neces 33.5 2E+02 0.0044 21.4 10.6 125 23-150 47-190 (321)
465 TIGR03551 F420_cofH 7,8-dideme 33.3 2E+02 0.0044 21.6 6.1 73 63-143 141-219 (343)
466 PRK07764 DNA polymerase III su 33.3 3.2E+02 0.007 23.7 11.2 45 24-70 182-226 (824)
467 KOG1147 Glutamyl-tRNA syntheta 33.0 47 0.001 26.9 2.7 18 126-143 314-331 (712)
468 PF12069 DUF3549: Protein of u 33.0 2.2E+02 0.0048 21.7 8.5 31 41-71 228-258 (340)
469 COG5210 GTPase-activating prot 32.9 2.6E+02 0.0056 22.4 9.3 46 64-109 363-408 (496)
470 PHA02743 Viral ankyrin protein 32.7 1.5E+02 0.0032 19.5 7.1 86 14-102 24-115 (166)
471 COG4003 Uncharacterized protei 32.5 1.1E+02 0.0024 18.0 4.4 24 50-73 38-61 (98)
472 PRK06585 holA DNA polymerase I 32.4 2.1E+02 0.0046 21.3 9.2 82 65-149 151-245 (343)
473 smart00164 TBC Domain in Tre-2 32.4 1.5E+02 0.0033 19.8 5.0 82 58-145 108-197 (199)
474 KOG0818 GTPase-activating prot 32.3 1.7E+02 0.0036 23.7 5.4 92 45-141 132-223 (669)
475 PF14744 WASH-7_mid: WASH comp 32.3 79 0.0017 24.0 3.6 31 130-160 281-311 (350)
476 KOG1920 IkappaB kinase complex 32.2 3.9E+02 0.0085 24.3 9.2 20 50-69 972-991 (1265)
477 KOG1920 IkappaB kinase complex 32.1 2.9E+02 0.0063 25.0 7.1 79 14-106 972-1054(1265)
478 KOG4648 Uncharacterized conser 32.0 1.8E+02 0.0039 22.4 5.4 51 15-68 105-156 (536)
479 COG5210 GTPase-activating prot 31.9 1.3E+02 0.0028 24.0 5.1 60 98-159 362-421 (496)
480 PF11768 DUF3312: Protein of u 31.6 2.9E+02 0.0063 22.6 9.1 21 13-33 414-434 (545)
481 COG2231 Uncharacterized protei 31.4 1.7E+02 0.0036 20.6 4.8 61 26-90 128-192 (215)
482 COG0819 TenA Putative transcri 31.1 1.9E+02 0.0042 20.4 5.6 55 38-92 104-169 (218)
483 PF11459 DUF2893: Protein of u 30.7 1.1E+02 0.0023 17.3 4.3 55 7-70 4-58 (69)
484 PRK14958 DNA polymerase III su 30.2 3E+02 0.0064 22.3 11.4 81 69-152 191-282 (509)
485 COG0320 LipA Lipoate synthase 30.0 70 0.0015 23.5 3.0 49 57-109 194-242 (306)
486 PRK09857 putative transposase; 29.9 2.3E+02 0.005 20.9 7.2 63 46-109 209-271 (292)
487 PF07875 Coat_F: Coat F domain 29.6 74 0.0016 17.2 2.5 18 131-148 44-61 (64)
488 KOG0550 Molecular chaperone (D 29.0 2.9E+02 0.0064 21.9 7.9 90 14-107 256-350 (486)
489 PRK08691 DNA polymerase III su 29.0 3.6E+02 0.0079 22.9 10.0 89 60-151 181-281 (709)
490 PHA02884 ankyrin repeat protei 29.0 2.4E+02 0.0053 20.9 5.8 82 13-103 36-126 (300)
491 PF04762 IKI3: IKI3 family; I 29.0 4.1E+02 0.0088 23.5 7.9 26 47-72 816-843 (928)
492 TIGR02710 CRISPR-associated pr 28.9 1.6E+02 0.0035 22.8 4.9 53 86-140 138-196 (380)
493 cd00045 DED The Death Effector 28.7 1.1E+02 0.0023 17.4 3.2 15 59-73 36-50 (77)
494 TIGR01529 argR_whole arginine 28.4 1.5E+02 0.0033 19.3 4.2 38 14-52 7-44 (146)
495 PF00566 RabGAP-TBC: Rab-GTPas 28.1 1.5E+02 0.0033 19.9 4.5 80 21-105 105-191 (214)
496 PF07064 RIC1: RIC1; InterPro 28.0 2.4E+02 0.0051 20.5 6.4 54 53-106 189-248 (258)
497 PF13606 Ank_3: Ankyrin repeat 27.7 69 0.0015 14.2 2.4 7 68-74 20-26 (30)
498 KOG1130 Predicted G-alpha GTPa 27.6 60 0.0013 25.5 2.4 53 14-67 24-79 (639)
499 smart00031 DED Death effector 27.5 1.3E+02 0.0028 17.2 3.4 37 60-97 38-74 (79)
500 PF04090 RNA_pol_I_TF: RNA pol 27.3 2.2E+02 0.0047 19.8 6.1 121 11-148 45-172 (199)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3e-34 Score=232.80 Aligned_cols=160 Identities=16% Similarity=0.216 Sum_probs=117.6
Q ss_pred cchhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038114 6 KTQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84 (170)
Q Consensus 6 ~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 84 (170)
|+..+|+ +|.+|++.|++++|.++|++| ...|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++|
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM-~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL 690 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDM-KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4556666 677777777777777777777 66777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCC
Q 038114 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164 (170)
Q Consensus 85 i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g 164 (170)
|.+|++.|++++|.++|++|...|+ .||..+||++|.+|++.|++++|.++|++|...|+.||..||++||.+|++.|
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~--~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKL--RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 7777777777777777777777777 77777777777777777777777777777777777777777777777777777
Q ss_pred cccc
Q 038114 165 NVLY 168 (170)
Q Consensus 165 ~~e~ 168 (170)
++++
T Consensus 769 ~le~ 772 (1060)
T PLN03218 769 DADV 772 (1060)
T ss_pred CHHH
Confidence 6654
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.1e-34 Score=231.46 Aligned_cols=160 Identities=21% Similarity=0.329 Sum_probs=102.1
Q ss_pred cchhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038114 6 KTQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84 (170)
Q Consensus 6 ~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 84 (170)
|+..+|+ +|.+|++.|+++.|.++|++| .+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+++
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M-~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLV-QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5556666 566666666666666666666 66666666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHh--CCCCCCHhhHHHHHHHhcC
Q 038114 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD--RELIPDGLTVRSLLCACTS 162 (170)
Q Consensus 85 i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~~~~p~~~t~~~ll~~~~~ 162 (170)
|.+|++.|++++|.++|++|...|+ .||..+||.+|.+|++.|++++|.++|++|.. .|+.||..||++||.+|++
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv--~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNV--KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 6666666666666666666666666 66666666666666666666666666666654 4566666666666666666
Q ss_pred CCcccc
Q 038114 163 PSNVLY 168 (170)
Q Consensus 163 ~g~~e~ 168 (170)
.|++++
T Consensus 592 ~G~lde 597 (1060)
T PLN03218 592 AGQVDR 597 (1060)
T ss_pred CCCHHH
Confidence 666554
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.1e-34 Score=227.14 Aligned_cols=157 Identities=26% Similarity=0.441 Sum_probs=148.8
Q ss_pred cchhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038114 6 KTQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84 (170)
Q Consensus 6 ~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 84 (170)
++.++|| +|.+|++.|++++|+++|++| ...|+.||..||+++|.+|++.|++++|.+++..|.+.|+.||..+||+|
T Consensus 288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M-~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L 366 (697)
T PLN03081 288 KTTVAWNSMLAGYALHGYSEEALCLYYEM-RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366 (697)
T ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH
Confidence 5889999 999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCC
Q 038114 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164 (170)
Q Consensus 85 i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g 164 (170)
|++|+++|++++|.++|++|. +||+.+||++|.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|++.|
T Consensus 367 i~~y~k~G~~~~A~~vf~~m~------~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 440 (697)
T PLN03081 367 VDLYSKWGRMEDARNVFDRMP------RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCC------CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC
Confidence 999999999999999999997 45668999999999999999999999999999999999999999999999999
Q ss_pred ccccC
Q 038114 165 NVLYL 169 (170)
Q Consensus 165 ~~e~~ 169 (170)
.++++
T Consensus 441 ~~~~a 445 (697)
T PLN03081 441 LSEQG 445 (697)
T ss_pred cHHHH
Confidence 88764
No 4
>PLN03077 Protein ECB2; Provisional
Probab=99.98 E-value=1.6e-31 Score=216.45 Aligned_cols=157 Identities=24% Similarity=0.354 Sum_probs=149.6
Q ss_pred cchhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038114 6 KTQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84 (170)
Q Consensus 6 ~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 84 (170)
++.++|| +|.+|++.|++++|+++|++| ...|+.||..||+++|.+|++.|+.+.+.+++..|.+.|+.||..+||+|
T Consensus 251 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M-~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~L 329 (857)
T PLN03077 251 RDCISWNAMISGYFENGECLEGLELFFTM-RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSL 329 (857)
T ss_pred CCcchhHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHH
Confidence 6789999 999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCC
Q 038114 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164 (170)
Q Consensus 85 i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g 164 (170)
|.+|+++|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|
T Consensus 330 i~~y~k~g~~~~A~~vf~~m~------~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g 403 (857)
T PLN03077 330 IQMYLSLGSWGEAEKVFSRME------TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403 (857)
T ss_pred HHHHHhcCCHHHHHHHHhhCC------CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc
Confidence 999999999999999999997 45668999999999999999999999999999999999999999999999998
Q ss_pred ccccC
Q 038114 165 NVLYL 169 (170)
Q Consensus 165 ~~e~~ 169 (170)
+++++
T Consensus 404 ~~~~a 408 (857)
T PLN03077 404 DLDVG 408 (857)
T ss_pred hHHHH
Confidence 87754
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.97 E-value=3.7e-31 Score=210.36 Aligned_cols=157 Identities=25% Similarity=0.416 Sum_probs=138.1
Q ss_pred cchhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038114 6 KTQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84 (170)
Q Consensus 6 ~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 84 (170)
|+.++|| +|.+|++.|++++|+++|++| .+.|+.|+..||+.++.+|++.|..+.+.+++..+.+.|+.||..+||+|
T Consensus 187 ~~~~t~n~li~~~~~~g~~~~A~~lf~~M-~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~L 265 (697)
T PLN03081 187 RNLASWGTIIGGLVDAGNYREAFALFREM-WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCAL 265 (697)
T ss_pred CCeeeHHHHHHHHHHCcCHHHHHHHHHHH-HHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHH
Confidence 6788899 899999999999999999999 88888898888888888888888888888888888888888888889999
Q ss_pred HHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCC
Q 038114 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164 (170)
Q Consensus 85 i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g 164 (170)
|++|+++|++++|.++|++|.. +|+++||++|.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|
T Consensus 266 i~~y~k~g~~~~A~~vf~~m~~------~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g 339 (697)
T PLN03081 266 IDMYSKCGDIEDARCVFDGMPE------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCC------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999998864 4558999999999999999999999999999999999999999999999888
Q ss_pred ccccC
Q 038114 165 NVLYL 169 (170)
Q Consensus 165 ~~e~~ 169 (170)
.++++
T Consensus 340 ~~~~a 344 (697)
T PLN03081 340 LLEHA 344 (697)
T ss_pred chHHH
Confidence 87754
No 6
>PLN03077 Protein ECB2; Provisional
Probab=99.97 E-value=1e-30 Score=211.78 Aligned_cols=156 Identities=29% Similarity=0.526 Sum_probs=142.4
Q ss_pred cchhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038114 6 KTQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84 (170)
Q Consensus 6 ~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 84 (170)
++..+|| +|.+|++.|++++|+++|++| ...|+.||..||+++|++|++.+++..+.+++..|.+.|+.||+.+||+|
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M-~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRM-LWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 6889999 899999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCC
Q 038114 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164 (170)
Q Consensus 85 i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g 164 (170)
|.+|+++|++++|.++|++|.. ||.++||++|.+|++.|++++|+++|.+|...|+.||..||+.+|.+|++.|
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~------~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPR------RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC------CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 9999999999999999999874 5558899999999988888899988888888888888888888888888887
Q ss_pred cccc
Q 038114 165 NVLY 168 (170)
Q Consensus 165 ~~e~ 168 (170)
+++.
T Consensus 303 ~~~~ 306 (857)
T PLN03077 303 DERL 306 (857)
T ss_pred ChHH
Confidence 7654
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.74 E-value=6.1e-18 Score=90.23 Aligned_cols=50 Identities=32% Similarity=0.602 Sum_probs=40.8
Q ss_pred CChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcC
Q 038114 113 PDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162 (170)
Q Consensus 113 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~ 162 (170)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888888775
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.69 E-value=5.5e-17 Score=86.50 Aligned_cols=50 Identities=36% Similarity=0.618 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhC
Q 038114 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127 (170)
Q Consensus 76 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~ 127 (170)
||..+||++|++|++.|++++|.++|++|++.|+ +||..||+++|.+||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~--~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGI--KPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHcC
Confidence 6677777777777777777777777777777777 7777777777777764
No 9
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=1.2e-12 Score=96.07 Aligned_cols=155 Identities=22% Similarity=0.300 Sum_probs=124.9
Q ss_pred cchhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038114 6 KTQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84 (170)
Q Consensus 6 ~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 84 (170)
++..++. +|.++++-.+.+.|.+++++. .....+.+..+||.+|.+-+-.. ..++..+|......||..|+|++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~-~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEH-RAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHH-HHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHH
Confidence 4677888 899999999999999999999 88888899999999998865433 37899999999999999999999
Q ss_pred HHHHHcCCCHHH----HHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHH-HHHHHHHHHh----CCCCCCHhh---
Q 038114 85 LNMYGKCGSLED----ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE-AMSLFSEMRD----RELIPDGLT--- 152 (170)
Q Consensus 85 i~~~~~~~~~~~----a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~l~~~m~~----~~~~p~~~t--- 152 (170)
+++..+.|+++. |.+++.+|++-|+ +|+..+|..+|..+++.++..+ |..++.++.. +.++|-..|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGV--ePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGV--EPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCC--CcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 999999998765 5678889999999 9999999999999999998744 4455555543 335554333
Q ss_pred -HHHHHHHhcCCCccc
Q 038114 153 -VRSLLCACTSPSNVL 167 (170)
Q Consensus 153 -~~~ll~~~~~~g~~e 167 (170)
|..-++.|.++.+.+
T Consensus 358 FF~~AM~Ic~~l~d~~ 373 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLE 373 (625)
T ss_pred HHHHHHHHHHHhhhHH
Confidence 555566666555443
No 10
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=6.4e-12 Score=92.38 Aligned_cols=121 Identities=16% Similarity=0.200 Sum_probs=108.5
Q ss_pred cchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHH
Q 038114 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNA 120 (170)
Q Consensus 41 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ 120 (170)
-+..||.+||.+.++....+.|.+++++-.......+..+||.+|.+-.- ....++..+|....+ +||..|||+
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm--~Pnl~TfNa 278 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKM--TPNLFTFNA 278 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhc--CCchHhHHH
Confidence 36679999999999999999999999999998889999999999987532 333889999999999 999999999
Q ss_pred HHHHHhCCCChHH----HHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccc
Q 038114 121 IIAGVASPSNANE----AMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 121 li~~~~~~g~~~~----a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e 167 (170)
++++.++.|.++. |.+++.+|++-|+.|...+|..+|..+++.++..
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~ 329 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQ 329 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCch
Confidence 9999999997766 5688999999999999999999999999988764
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.39 E-value=1.7e-11 Score=91.90 Aligned_cols=20 Identities=20% Similarity=-0.017 Sum_probs=7.9
Q ss_pred HhhhcccCCHHHHHHHHHHH
Q 038114 14 YNSQPIQNLYNEALVAFDFL 33 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m 33 (170)
...|.+.|+++.|..+|+++
T Consensus 114 a~~~~~~g~~~~A~~~~~~~ 133 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQL 133 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 33333334444444444333
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.37 E-value=3.1e-11 Score=90.45 Aligned_cols=150 Identities=9% Similarity=0.024 Sum_probs=80.3
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcch----hhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRP----STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY 88 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 88 (170)
+...+.+.|++++|.+.++.+ ...+..+.. ..+..+...+.+.|++++|...|+++.+.. +.+...+..+...|
T Consensus 147 la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 224 (389)
T PRK11788 147 LLEIYQQEKDWQKAIDVAERL-EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLA 224 (389)
T ss_pred HHHHHHHhchHHHHHHHHHHH-HHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHH
Confidence 555566666666666666665 433322211 123344445555566666666666665542 22344555555666
Q ss_pred HcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCcccc
Q 038114 89 GKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~ 168 (170)
.+.|++++|.+.|+++...+. .....+++.+..+|+..|++++|...++++.+. .|+...+..+...+.+.|+.++
T Consensus 225 ~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~ 300 (389)
T PRK11788 225 LAQGDYAAAIEALERVEEQDP--EYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEA 300 (389)
T ss_pred HHCCCHHHHHHHHHHHHHHCh--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHH
Confidence 666666666666666554322 222344555666666666666666666665543 3444455556666666555543
No 13
>PF12854 PPR_1: PPR repeat
Probab=99.31 E-value=4.2e-12 Score=61.62 Aligned_cols=32 Identities=38% Similarity=0.573 Sum_probs=18.2
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 038114 73 KSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104 (170)
Q Consensus 73 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 104 (170)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
No 14
>PF12854 PPR_1: PPR repeat
Probab=99.24 E-value=1.1e-11 Score=60.11 Aligned_cols=34 Identities=35% Similarity=0.738 Sum_probs=31.9
Q ss_pred CCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 107 RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 107 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
+|+ .||..|||++|.+||+.|++++|.++|++|+
T Consensus 1 ~G~--~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGC--EPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCC--CCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 367 8999999999999999999999999999984
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.18 E-value=1.7e-09 Score=88.16 Aligned_cols=147 Identities=12% Similarity=0.059 Sum_probs=71.6
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
+...+.+.|++++|...|+++ .... +.+...+..+..++.+.|++++|..+|..+.+.. +.+..++..+...+...|
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 683 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKL-LALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAK 683 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 445555555555555555554 3221 1233344445555555555555555555554432 223445555555555555
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccc
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e 167 (170)
++++|.++++.+..... ++...+..+...+...|++++|...|+++...+ |+..++..+..++.+.|+.+
T Consensus 684 ~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 684 RTESAKKIAKSLQKQHP---KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred CHHHHHHHHHHHHhhCc---CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHH
Confidence 55555555555544332 333445555555555556666655555555432 33344455555555555443
No 16
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.13 E-value=3.7e-09 Score=86.15 Aligned_cols=149 Identities=7% Similarity=-0.016 Sum_probs=96.7
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
+...+.+.|++++|..+++.+ ... .+.+..+|..+..++...|++++|...|..+.+.. +.++..+..+...|.+.|
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 649 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEA-ADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMK 649 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHH-HHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 566666666777777766666 332 23455566777777777777777777777766543 334556667777777777
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCcccc
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~ 168 (170)
++++|..+|+.+..... .+..++..+...+...|++++|..+++.+...+ .++...+..+...+.+.|++++
T Consensus 650 ~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 650 NYAKAITSLKRALELKP---DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred CHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHH
Confidence 77777777776654322 345667777777777777777777777776654 3355566666677777776654
No 17
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.11 E-value=1.2e-09 Score=86.44 Aligned_cols=157 Identities=14% Similarity=0.134 Sum_probs=125.7
Q ss_pred cccchhHhH-HHhhhcccCCHHHHHHHHHHHHhhCC------------------------CCcchhhHHHHHHHhhcccc
Q 038114 4 NLKTQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTN------------------------FRIRPSTYACLISTCSSLRS 58 (170)
Q Consensus 4 ~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~------------------------~~p~~~~~~~li~~~~~~~~ 58 (170)
+.|+.+||. +|..||..|+++.|- +|..| +... -.|.+.||+.|+.+|...|+
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm-~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGD 98 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFM-EIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGD 98 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhh-hcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccc
Confidence 468889999 999999999999998 77777 4322 23778899999999999988
Q ss_pred hHH---HHHHHHHHHh----cC----------------------------------------------------------
Q 038114 59 LQL---GRKVHDHILS----SK---------------------------------------------------------- 73 (170)
Q Consensus 59 ~~~---a~~~~~~m~~----~~---------------------------------------------------------- 73 (170)
+.. +.+.+..... .|
T Consensus 99 li~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfL 178 (1088)
T KOG4318|consen 99 LILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFL 178 (1088)
T ss_pred hHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHH
Confidence 654 2221111111 12
Q ss_pred --------------------C-CCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChH
Q 038114 74 --------------------S-QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNAN 132 (170)
Q Consensus 74 --------------------~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~ 132 (170)
. .|++.+|.+++++-...|+.+.|..++.+|++.|+ ..+.+-|..+|.+ .++..
T Consensus 179 rqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf--pir~HyFwpLl~g---~~~~q 253 (1088)
T KOG4318|consen 179 RQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF--PIRAHYFWPLLLG---INAAQ 253 (1088)
T ss_pred HHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC--Ccccccchhhhhc---Cccch
Confidence 1 37889999999999999999999999999999999 8888888888877 78888
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccc
Q 038114 133 EAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 133 ~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e 167 (170)
.++.++.-|...|+.|+..|+..-+..+.++|...
T Consensus 254 ~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 254 VFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred HHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhh
Confidence 99999999999999999999998888887765543
No 18
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.99 E-value=7.7e-10 Score=53.88 Aligned_cols=34 Identities=35% Similarity=0.677 Sum_probs=28.0
Q ss_pred hHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCH
Q 038114 117 SWNAIIAGVASPSNANEAMSLFSEMRDRELIPDG 150 (170)
Q Consensus 117 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~ 150 (170)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888888888888888888888888888873
No 19
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.96 E-value=1.1e-08 Score=73.62 Aligned_cols=159 Identities=13% Similarity=0.039 Sum_probs=109.7
Q ss_pred cchhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038114 6 KTQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84 (170)
Q Consensus 6 ~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 84 (170)
++...+. .+..+.+.++++++..+++........+.++..|..+-..+.+.|+.++|.+.+++..+.. +-|....+.+
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l 186 (280)
T PF13429_consen 108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNAL 186 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHH
T ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 3344455 6788889999999999999984444456777888888899999999999999999998863 3358889999
Q ss_pred HHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCC
Q 038114 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164 (170)
Q Consensus 85 i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g 164 (170)
+..+...|+.+++.+++........ .|...+..+..++...|+.++|..+|++..+.. +.|......+..++...|
T Consensus 187 ~~~li~~~~~~~~~~~l~~~~~~~~---~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g 262 (280)
T PF13429_consen 187 AWLLIDMGDYDEAREALKRLLKAAP---DDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAG 262 (280)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHH-H---TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---
T ss_pred HHHHHHCCChHHHHHHHHHHHHHCc---CHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccc
Confidence 9999999999998888887765432 344577889999999999999999999977643 347778888999999999
Q ss_pred ccccC
Q 038114 165 NVLYL 169 (170)
Q Consensus 165 ~~e~~ 169 (170)
+.+++
T Consensus 263 ~~~~A 267 (280)
T PF13429_consen 263 RKDEA 267 (280)
T ss_dssp -----
T ss_pred ccccc
Confidence 98875
No 20
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.94 E-value=1.6e-07 Score=64.82 Aligned_cols=150 Identities=10% Similarity=-0.045 Sum_probs=86.4
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
+...+...|++++|...+++. .... +.+...+..+...+...|++++|.+.+.+..+.. +.+...+..+...+...|
T Consensus 37 la~~~~~~~~~~~A~~~~~~~-l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g 113 (234)
T TIGR02521 37 LALGYLEQGDLEVAKENLDKA-LEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQG 113 (234)
T ss_pred HHHHHHHCCCHHHHHHHHHHH-HHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcc
Confidence 566667777777777777766 4332 2234456666666677777777777777666553 224456666666666777
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccc
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e 167 (170)
++++|.+.|+........ ......+..+...+...|++++|...+.+..... ..+...+..+...+...|+.+
T Consensus 114 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 114 KYEQAMQQFEQAIEDPLY-PQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred cHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 777777777666543210 1222344445555666666666666666555432 112344555555555555544
No 21
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.93 E-value=2e-09 Score=52.14 Aligned_cols=33 Identities=27% Similarity=0.633 Sum_probs=26.5
Q ss_pred hhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCC
Q 038114 116 ASWNAIIAGVASPSNANEAMSLFSEMRDRELIP 148 (170)
Q Consensus 116 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p 148 (170)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 22
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.90 E-value=2.2e-07 Score=64.06 Aligned_cols=155 Identities=7% Similarity=-0.087 Sum_probs=120.6
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCC-CCCHHHHHHHH
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYIL 85 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li 85 (170)
...+. +...+...|++++|.+.+++. .... +.+...+..+-..+...|++++|.+.+....+... ......+..+-
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 142 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRA-LTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAG 142 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 33444 688889999999999999998 5543 23456777788888999999999999999987532 23456777788
Q ss_pred HHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCc
Q 038114 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165 (170)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 165 (170)
..+...|++++|.+.|.+...... .+...+..+...+...|++++|...+++.... ...+...+..+...+...|+
T Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 218 (234)
T TIGR02521 143 LCALKAGDFDKAEKYLTRALQIDP---QRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGD 218 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhh
Confidence 889999999999999998876533 34567888889999999999999999998876 34455666667777766666
Q ss_pred ccc
Q 038114 166 VLY 168 (170)
Q Consensus 166 ~e~ 168 (170)
.++
T Consensus 219 ~~~ 221 (234)
T TIGR02521 219 VAA 221 (234)
T ss_pred HHH
Confidence 554
No 23
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.78 E-value=1e-07 Score=71.78 Aligned_cols=125 Identities=15% Similarity=0.076 Sum_probs=92.9
Q ss_pred CCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCC
Q 038114 37 TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS--KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPD 114 (170)
Q Consensus 37 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~ 114 (170)
.+.+.++..+..+++.+....+.+.+..++-.++.+ ....-..|..++|+.|.+.|..+.+..++..=...|+ =||
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGi--F~D 137 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGI--FPD 137 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhccc--CCC
Confidence 345567777777888888877788888877777765 2323344556888888888888888888887777787 688
Q ss_pred hhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCC
Q 038114 115 LASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163 (170)
Q Consensus 115 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~ 163 (170)
..+||.++..+.+.|++..|.++..+|..++...+..|+..-+.+|.+.
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888888777777777777766666554
No 24
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.76 E-value=9.7e-09 Score=49.85 Aligned_cols=33 Identities=30% Similarity=0.458 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCC
Q 038114 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPD 114 (170)
Q Consensus 80 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~ 114 (170)
+||++|.+|++.|++++|.++|++|.+.|+ +||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~--~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGI--EPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCC
Confidence 456666666666666666666666666555 554
No 25
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.74 E-value=1.7e-08 Score=47.65 Aligned_cols=30 Identities=33% Similarity=0.690 Sum_probs=21.5
Q ss_pred hHHHHHHHHhCCCChHHHHHHHHHHHhCCC
Q 038114 117 SWNAIIAGVASPSNANEAMSLFSEMRDREL 146 (170)
Q Consensus 117 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 146 (170)
|||++|.+|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777776653
No 26
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.73 E-value=1.2e-08 Score=49.38 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhcccCCC
Q 038114 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 80 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 109 (170)
+||++|++|++.|+++.|.++|++|++.|+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 555555555555555555555555555555
No 27
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.65 E-value=2.8e-06 Score=67.71 Aligned_cols=152 Identities=10% Similarity=-0.091 Sum_probs=112.9
Q ss_pred HhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcc-hhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038114 10 RFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIR-PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNM 87 (170)
Q Consensus 10 ~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 87 (170)
.|. +-..+...|++++|+..|++. ... .|+ ...|..+-..+...|++++|...|+...+.. +.+...|..+-..
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~ka-l~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~ 408 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKS-IEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQL 408 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-HHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344 566677889999999999887 443 343 4467777777888899999999999887763 3357788888888
Q ss_pred HHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccc
Q 038114 88 YGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e 167 (170)
+...|++++|...|++...... .+...+..+...+.+.|++++|+..|++..+.. .-+...+..+-..+...|+++
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P---~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDP---DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCc---cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHH
Confidence 8899999999999988776533 345667777788888899999999988876542 223566777777777777766
Q ss_pred cC
Q 038114 168 YL 169 (170)
Q Consensus 168 ~~ 169 (170)
++
T Consensus 485 ~A 486 (615)
T TIGR00990 485 EA 486 (615)
T ss_pred HH
Confidence 53
No 28
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.65 E-value=1e-06 Score=66.47 Aligned_cols=119 Identities=17% Similarity=0.143 Sum_probs=102.3
Q ss_pred chhHhH-HHhhhcccCCHHHHHHHHHHHHhhC--CCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHH
Q 038114 7 TQLRFT-FYNSQPIQNLYNEALVAFDFLQNNT--NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83 (170)
Q Consensus 7 ~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 83 (170)
..+... +++.+.+..+.+++..++... +.. ....-+.|..++|+.|.+.|..+.+..++..=...|+-||..++|.
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~-R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKF-RHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHH-HcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 455566 688888999999999998888 443 3445556778999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCC
Q 038114 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128 (170)
Q Consensus 84 li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~ 128 (170)
||+.+.+.|++..|.+++.+|...+. -.+..|+..-+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~--~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEE--FDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHHh
Confidence 99999999999999999999887777 67778888888887776
No 29
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.64 E-value=2.7e-06 Score=68.32 Aligned_cols=122 Identities=10% Similarity=-0.042 Sum_probs=54.8
Q ss_pred hhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHH----HHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 038114 16 SQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQL----GRKVHDHILSSKSQPDVVLQNYILNMYGKC 91 (170)
Q Consensus 16 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 91 (170)
.+.+.|++++|...|++. .... +-+...+..+-..+...|++++ |...|+...+.. +.+...+..+...+.+.
T Consensus 221 ~l~~~g~~~eA~~~~~~a-l~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 221 TLCAVGKYQEAIQTGESA-LARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRT 297 (656)
T ss_pred HHHHCCCHHHHHHHHHHH-HhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHC
Confidence 344444444444444444 2221 1123333334444444444443 444444444332 12344555555555555
Q ss_pred CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHh
Q 038114 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 143 (170)
|++++|...++...+... .+...+..+...+...|++++|...|+.+..
T Consensus 298 g~~~eA~~~l~~al~l~P---~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 298 GQNEKAIPLLQQSLATHP---DLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555555555443322 1223344445555555555555555555543
No 30
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.63 E-value=2.4e-06 Score=68.60 Aligned_cols=148 Identities=8% Similarity=-0.093 Sum_probs=72.4
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
+...+.+.|++++|...+++. .... +.+...+..+..++...|++++|...+..+......+ ...+..+ ..+.+.|
T Consensus 116 la~~l~~~g~~~~Ai~~l~~A-l~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g 191 (656)
T PRK15174 116 VASVLLKSKQYATVADLAEQA-WLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKS 191 (656)
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcC
Confidence 344455555555555555555 3221 1223344555555555555555555555554432221 2222222 2245556
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccc
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e 167 (170)
++++|...++.+..... .++...+..+...+...|++++|+..+++..... .-+...+..+-..+...|+.+
T Consensus 192 ~~~eA~~~~~~~l~~~~--~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~ 263 (656)
T PRK15174 192 RLPEDHDLARALLPFFA--LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSR 263 (656)
T ss_pred CHHHHHHHHHHHHhcCC--CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCch
Confidence 66666666555544332 2333344444455566666666666666655443 223444555555666666654
No 31
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.60 E-value=3.7e-08 Score=46.47 Aligned_cols=29 Identities=38% Similarity=0.489 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhcccCC
Q 038114 80 LQNYILNMYGKCGSLEDARVVSDEMPQRN 108 (170)
Q Consensus 80 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 108 (170)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
No 32
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.58 E-value=1.1e-06 Score=53.66 Aligned_cols=79 Identities=15% Similarity=0.235 Sum_probs=54.8
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHcCC--------CHHHHHHHHhhcccCCCCCCCChhh
Q 038114 47 ACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKCG--------SLEDARVVSDEMPQRNVIESPDLAS 117 (170)
Q Consensus 47 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~~~~~~p~~~~ 117 (170)
...|..|...+++.....+|..+++.|+ .|++.+|+.++++.++.. .+-..+.+|+.|...++ +|+..|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~l--KP~~et 106 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKL--KPNDET 106 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhcc--CCcHHH
Confidence 3456666666778888888888888887 777888888887777642 23445666777777666 777777
Q ss_pred HHHHHHHHhC
Q 038114 118 WNAIIAGVAS 127 (170)
Q Consensus 118 ~~~li~~~~~ 127 (170)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 7777766543
No 33
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.57 E-value=8.7e-07 Score=54.14 Aligned_cols=78 Identities=21% Similarity=0.102 Sum_probs=68.7
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCC-CcchhhHHHHHHHhhccc--------chHHHHHHHHHHHhcCCCCCHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNF-RIRPSTYACLISTCSSLR--------SLQLGRKVHDHILSSKSQPDVVLQNY 83 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~~~~~~~~~~~~ 83 (170)
-|..|...+++.....+|+.+ ++.|+ .|+..+|+.++.+.++.. +.-..+.+|..|...++.|+..+|++
T Consensus 31 ~I~~~~~~~d~N~I~~lYqsl-kRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSL-KRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHH-HhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 477777889999999999999 99999 999999999999987653 34567789999999999999999999
Q ss_pred HHHHHHcC
Q 038114 84 ILNMYGKC 91 (170)
Q Consensus 84 li~~~~~~ 91 (170)
++..+.+.
T Consensus 110 vl~~Llkg 117 (120)
T PF08579_consen 110 VLGSLLKG 117 (120)
T ss_pred HHHHHHHh
Confidence 99988754
No 34
>PRK12370 invasion protein regulator; Provisional
Probab=98.56 E-value=9.2e-06 Score=64.05 Aligned_cols=149 Identities=13% Similarity=0.019 Sum_probs=93.8
Q ss_pred hHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038114 9 LRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNM 87 (170)
Q Consensus 9 ~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 87 (170)
..+. +-..+...|++++|...|++. .+.+ +.+...+..+-.++...|++++|...++...+.... +...+..+...
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~A-l~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~ 415 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQA-NLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWI 415 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHH
Confidence 3444 455667788888888888887 5443 223456667777778888888888888888775322 22233334445
Q ss_pred HHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhH-HHHHHHhcCCC
Q 038114 88 YGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTV-RSLLCACTSPS 164 (170)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~-~~ll~~~~~~g 164 (170)
+...|++++|...+++...... +-+...+..+-..+...|+.++|...+.++... .|+..+. +.+...|.+.|
T Consensus 416 ~~~~g~~eeA~~~~~~~l~~~~--p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 416 TYYHTGIDDAIRLGDELRSQHL--QDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHhccCHHHHHHHHHHHHHhcc--ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH
Confidence 6667788888888887654432 123344666667777888888888888776433 3443333 33333444444
No 35
>PRK12370 invasion protein regulator; Provisional
Probab=98.52 E-value=7.6e-06 Score=64.53 Aligned_cols=144 Identities=13% Similarity=0.004 Sum_probs=106.5
Q ss_pred ccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 038114 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98 (170)
Q Consensus 19 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 98 (170)
..+++++|...+++. .+.. +-+...+..+-..+...|++++|...|++..+.. +.+...+..+-..+...|++++|.
T Consensus 316 ~~~~~~~A~~~~~~A-l~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi 392 (553)
T PRK12370 316 KQNAMIKAKEHAIKA-TELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEAL 392 (553)
T ss_pred cchHHHHHHHHHHHH-HhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345688999999988 5443 2355577777777888999999999999998874 335778888999999999999999
Q ss_pred HHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHhcCCCccccC
Q 038114 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDG-LTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 99 ~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~e~~ 169 (170)
..++...+.+. . +...+..+...+...|++++|...+++..... .|+. ..+..+-.++...|+.+++
T Consensus 393 ~~~~~Al~l~P--~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA 460 (553)
T PRK12370 393 QTINECLKLDP--T-RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELA 460 (553)
T ss_pred HHHHHHHhcCC--C-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHH
Confidence 99999887644 2 22233344445666899999999999887653 3433 3456666777788887764
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.51 E-value=2.1e-07 Score=67.06 Aligned_cols=142 Identities=11% Similarity=0.014 Sum_probs=57.4
Q ss_pred cccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHcCCCHHH
Q 038114 18 PIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS-KSQPDVVLQNYILNMYGKCGSLED 96 (170)
Q Consensus 18 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~ 96 (170)
...+++++|..+++.. -+.. +++..+...+..+.+.++++.+..+++...+. ....+...|..+-..+.+.|++++
T Consensus 88 ~~~~~~~~A~~~~~~~-~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKA-YERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp ---------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHH
T ss_pred cccccccccccccccc-cccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4556666666655554 3221 44455555666666666666666666665432 223455566666666666666666
Q ss_pred HHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCcc
Q 038114 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166 (170)
Q Consensus 97 a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 166 (170)
|.+.|++..+... -|....+.++..+...|+.+++.+++....+.. ..|...+..+-.++...|+.
T Consensus 165 A~~~~~~al~~~P---~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~ 230 (280)
T PF13429_consen 165 ALRDYRKALELDP---DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRY 230 (280)
T ss_dssp HHHHHHHHHHH-T---T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-H
T ss_pred HHHHHHHHHHcCC---CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccc
Confidence 6666666554422 134455556666666666666666665555443 33333444555555554443
No 37
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.51 E-value=1.1e-05 Score=67.21 Aligned_cols=148 Identities=8% Similarity=-0.071 Sum_probs=84.5
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
+...+.+.|++++|...+++. .... +.+...+..+.....+.|++++|...+.+..+. .|+...|..+-..+.+.|
T Consensus 548 la~all~~Gd~~eA~~~l~qA-L~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG 623 (987)
T PRK09782 548 AANTAQAAGNGAARDRWLQQA-EQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHH-HhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCC
Confidence 444555566666666666665 4332 112222222223333446666666666666654 345666666767777777
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCcccc
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~ 168 (170)
++++|...|+....... -+...++.+-..+...|++++|+..+++..+.. .-+...+..+-.++...|+.++
T Consensus 624 ~~deA~~~l~~AL~l~P---d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 624 NVPAAVSDLRAALELEP---NNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred CHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 77777777776665533 334556666666777777777777777665432 1234455666666666666554
No 38
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.50 E-value=8.5e-06 Score=65.05 Aligned_cols=150 Identities=11% Similarity=-0.090 Sum_probs=76.3
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
+...+...|++++|...|++. .... +.+...+..+-.++.+.|++++|...|++..+.. +-++..|+.+-..+...|
T Consensus 405 lg~~~~~~g~~~~A~~~~~ka-l~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKS-IDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcc
Confidence 445555556666666666555 3321 1123344444555555666666666666555431 223556666666666666
Q ss_pred CHHHHHHHHhhcccCCCCCCCChh------hHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCcc
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLA------SWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~------~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 166 (170)
++++|.+.|+....... ..+.. .++..+..+...|++++|..++++..... .-+...+..+...+.+.|+.
T Consensus 482 ~~~~A~~~~~~Al~l~p--~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEK--ETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred CHHHHHHHHHHHHhcCC--ccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCH
Confidence 66666666665443321 11100 11112222333466666766666654432 12233466666677766666
Q ss_pred cc
Q 038114 167 LY 168 (170)
Q Consensus 167 e~ 168 (170)
++
T Consensus 559 ~e 560 (615)
T TIGR00990 559 DE 560 (615)
T ss_pred HH
Confidence 54
No 39
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.46 E-value=2.2e-06 Score=58.49 Aligned_cols=104 Identities=12% Similarity=0.083 Sum_probs=77.5
Q ss_pred CCCcchhhHHHHHHHhhc-----ccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC----------------CHHH
Q 038114 38 NFRIRPSTYACLISTCSS-----LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG----------------SLED 96 (170)
Q Consensus 38 ~~~p~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----------------~~~~ 96 (170)
+-.-+-.+|..++..+.+ .|+.+=....+..|.+.|+.-|..+|+.||+.+=+.. +-+-
T Consensus 42 ~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c 121 (228)
T PF06239_consen 42 GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQEC 121 (228)
T ss_pred hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHH
Confidence 345677888888888864 4778888888999999999999999999998776521 2355
Q ss_pred HHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCC-hHHHHHHHHHHHh
Q 038114 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN-ANEAMSLFSEMRD 143 (170)
Q Consensus 97 a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~l~~~m~~ 143 (170)
|.++++.|...|+ .||..|+..++..+.+.+. ..+..++.-+|.+
T Consensus 122 ~i~lL~qME~~gV--~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 122 AIDLLEQMENNGV--MPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHHHHHHHcCC--CCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 7777777777777 7777777777777777775 4555556555544
No 40
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.42 E-value=1.4e-05 Score=59.99 Aligned_cols=127 Identities=12% Similarity=0.106 Sum_probs=101.9
Q ss_pred chhHhHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038114 7 TQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86 (170)
Q Consensus 7 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 86 (170)
|..+-+|++.+...++++.|+++|+++ .... |+ ....+.+.+...++-.+|.+++.+..+.. +-+......-.+
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L-~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKL-RERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAE 242 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHH-HhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 444455788888889999999999999 5544 44 44557777777788888999888888653 446778888888
Q ss_pred HHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
.+.+.++++.|+++.++..+... -+..+|..|..+|...|+++.|+..++.+-
T Consensus 243 fLl~k~~~~lAL~iAk~av~lsP---~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELSP---SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 89999999999999999887632 345699999999999999999999998774
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.38 E-value=2.3e-05 Score=59.42 Aligned_cols=54 Identities=15% Similarity=0.033 Sum_probs=44.3
Q ss_pred ChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccccC
Q 038114 114 DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 114 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~~ 169 (170)
|...+.++-..|.+.+++++|.+.|+...+. .|+..+|..+-..+.+.|+.+++
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHH
Confidence 3445677778889999999999999988754 69999999999999988887653
No 42
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.37 E-value=2.2e-05 Score=57.78 Aligned_cols=157 Identities=9% Similarity=-0.033 Sum_probs=117.6
Q ss_pred hHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchh-------hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHH
Q 038114 9 LRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPS-------TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80 (170)
Q Consensus 9 ~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 80 (170)
.... ...+|.+.|.+.....+...+ .+.|.--++. +|..++.-....+..+.-...|++.... ..-++..
T Consensus 188 ~vlrLa~r~y~~~g~~~~ll~~l~~L-~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l 265 (400)
T COG3071 188 EVLRLALRAYIRLGAWQALLAILPKL-RKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPEL 265 (400)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH-HHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhH
Confidence 3445 378888888888888888888 6666544433 6777777777766666666666666443 3445666
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcccCCCC----------------------------CCCChhhHHHHHHHHhCCCChH
Q 038114 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVI----------------------------ESPDLASWNAIIAGVASPSNAN 132 (170)
Q Consensus 81 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----------------------------~~p~~~~~~~li~~~~~~g~~~ 132 (170)
-.+++.-+.++|+.++|.++..+-.+.+.. ++-++-.+.++-..|.+.+.|.
T Consensus 266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~ 345 (400)
T COG3071 266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWG 345 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHH
Confidence 777888888999999999887766544332 1334567888889999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccccC
Q 038114 133 EAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 133 ~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~~ 169 (170)
+|...|+ .....+|+..+|..+-.++.+.|+.+++
T Consensus 346 kA~~~le--aAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 346 KASEALE--AALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred HHHHHHH--HHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 9999999 5557899999999999999999987654
No 43
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.36 E-value=3.8e-05 Score=64.11 Aligned_cols=145 Identities=12% Similarity=-0.024 Sum_probs=90.8
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS 93 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 93 (170)
...+.+.|++++|...|+++ ... .|+...+..+..++.+.|++++|...+.+..+.. +.+...+..+.....+.|+
T Consensus 516 A~al~~~Gr~eeAi~~~rka-~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKI-SLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHH-hcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCC
Confidence 33445677777777777776 433 2333444555566667777777777777777653 2223333333334445578
Q ss_pred HHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHhcCCCcccc
Q 038114 94 LEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDG-LTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 94 ~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~e~ 168 (170)
+++|...|++..+. .|+...|..+...+.+.|+.++|+..+++.... .|+. ..+..+-.++...|+.++
T Consensus 592 ~~eAl~~~~~AL~l----~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 592 PELALNDLTRSLNI----APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 88888888777654 455667777778888888888888888876654 3433 344444456666666554
No 44
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.35 E-value=4.9e-07 Score=72.27 Aligned_cols=91 Identities=7% Similarity=0.054 Sum_probs=80.1
Q ss_pred HHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccC
Q 038114 28 VAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQR 107 (170)
Q Consensus 28 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 107 (170)
.++-.+ +..|+.|+.+||.++|..|+..|+.+.|- +|.-|+-....-+...++.++.+....++.+.+.
T Consensus 11 nfla~~-e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALH-EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHH-HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 567788 88999999999999999999999999998 9999988888888899999999998888877665
Q ss_pred CCCCCCChhhHHHHHHHHhCCCChHH
Q 038114 108 NVIESPDLASWNAIIAGVASPSNANE 133 (170)
Q Consensus 108 ~~~~~p~~~~~~~li~~~~~~g~~~~ 133 (170)
.|...||+.++.+|.++|+...
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHH
Confidence 3666899999999999998765
No 45
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.34 E-value=1.4e-05 Score=54.70 Aligned_cols=86 Identities=21% Similarity=0.288 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHc-----CCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhC----------------CCChHHHH
Q 038114 77 DVVLQNYILNMYGK-----CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS----------------PSNANEAM 135 (170)
Q Consensus 77 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~----------------~g~~~~a~ 135 (170)
+..+|..+|+.|.+ .|.++-....+..|.+-|+ .-|..+|+.||..+=+ ..+-+-|+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv--~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGV--EKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCC--cccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 44455555555443 2445555555555555555 5555555555555421 12334455
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHhcCCC
Q 038114 136 SLFSEMRDRELIPDGLTVRSLLCACTSPS 164 (170)
Q Consensus 136 ~l~~~m~~~~~~p~~~t~~~ll~~~~~~g 164 (170)
+++++|...|+.||..|+..|++.+++.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 55566665566666666665555555443
No 46
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.32 E-value=3.2e-05 Score=66.00 Aligned_cols=146 Identities=12% Similarity=0.044 Sum_probs=107.5
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
+...+...|+.++|..+++.- +.++..+..+-..+.+.|++++|...|+...+.. +.++..+..+...|...|
T Consensus 579 ~a~~l~~~G~~~eA~~~l~~~------p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLRQQ------PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQG 651 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHhC------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 456778889999999887732 3455667778888889999999999999998764 335788899999999999
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCC--CC---CHhhHHHHHHHhcCCCccc
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL--IP---DGLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~--~p---~~~t~~~ll~~~~~~g~~e 167 (170)
++++|.+.++...+... .+...+..+...+...|++++|.++++.+....- .| +...+..+-+.+.+.|+.+
T Consensus 652 ~~~eA~~~l~~ll~~~p---~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~ 728 (1157)
T PRK11447 652 DLAAARAQLAKLPATAN---DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQ 728 (1157)
T ss_pred CHHHHHHHHHHHhccCC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHH
Confidence 99999999997765422 3345566677788889999999999998876532 22 2234555556666666655
Q ss_pred c
Q 038114 168 Y 168 (170)
Q Consensus 168 ~ 168 (170)
+
T Consensus 729 ~ 729 (1157)
T PRK11447 729 Q 729 (1157)
T ss_pred H
Confidence 4
No 47
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.30 E-value=8.2e-05 Score=60.98 Aligned_cols=147 Identities=10% Similarity=0.087 Sum_probs=110.0
Q ss_pred HHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 038114 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91 (170)
Q Consensus 12 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 91 (170)
..+......|+.++|+++|.+. ... -..+...+..+-.++.+.|++++|..+|++..+.. +.+...+..+...+...
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~-~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRY-RVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH-Hhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 3677788899999999999988 542 23445568888888999999999999999987753 33466777888889999
Q ss_pred CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHhcCCCccc
Q 038114 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD-GLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~e 167 (170)
|++++|...+++..+... .+.. +..+...+...|+.++|+..+++..+. .|+ ...+..+..++.+.|..+
T Consensus 97 g~~~eA~~~l~~~l~~~P---~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAP---DKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred CCHHHHHHHHHHHHHhCC---CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChH
Confidence 999999999998876633 3444 778888888999999999999988865 333 333344555555544443
No 48
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.27 E-value=0.00016 Score=49.51 Aligned_cols=111 Identities=11% Similarity=0.089 Sum_probs=88.5
Q ss_pred CcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHcCCC--HHHHHHHHhhcccCCCCCCCChh
Q 038114 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNM-YGKCGS--LEDARVVSDEMPQRNVIESPDLA 116 (170)
Q Consensus 40 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~--~~~a~~~~~~m~~~~~~~~p~~~ 116 (170)
+.+...|..+-..|...|++++|...|+...+.. +-+...+..+-.+ +.+.|+ .++|.+++++..+.+. -+..
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP---~~~~ 145 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA---NEVT 145 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC---CChh
Confidence 3566688888889999999999999999998865 3467888888776 467777 5999999999987755 3567
Q ss_pred hHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 038114 117 SWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155 (170)
Q Consensus 117 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ 155 (170)
.+..+-..+...|++++|...|+++.+.. .|+..-+..
T Consensus 146 al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~~ 183 (198)
T PRK10370 146 ALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQL 183 (198)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHHH
Confidence 88888899999999999999999997654 444444433
No 49
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.27 E-value=7.3e-05 Score=48.55 Aligned_cols=94 Identities=3% Similarity=-0.192 Sum_probs=66.5
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHH
Q 038114 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGV 125 (170)
Q Consensus 46 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~ 125 (170)
+..+-.++...|++++|...|....... +.+...|..+-.++.+.|++++|...|+.....+. .+...+..+-.++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p---~~~~a~~~lg~~l 102 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA---SHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---CCcHHHHHHHHHH
Confidence 4445556667777888888877777653 33567777777777788888888888887775433 4556677777777
Q ss_pred hCCCChHHHHHHHHHHHh
Q 038114 126 ASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 126 ~~~g~~~~a~~l~~~m~~ 143 (170)
...|+.++|...|.....
T Consensus 103 ~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777888888887776654
No 50
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.27 E-value=7.8e-05 Score=61.11 Aligned_cols=54 Identities=6% Similarity=-0.044 Sum_probs=23.0
Q ss_pred HhhcccchHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 038114 52 TCSSLRSLQLGRKVHDHILSSKSQP---DVVLQNYILNMYGKCGSLEDARVVSDEMP 105 (170)
Q Consensus 52 ~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 105 (170)
++...|++++|...|+++.+..... .......|..++...|++++|.++++.+.
T Consensus 281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~ 337 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTI 337 (765)
T ss_pred HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 4444455555555555444321100 12233334444444555555555544443
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.25 E-value=4.8e-05 Score=57.84 Aligned_cols=93 Identities=11% Similarity=-0.014 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCC--------------------------------CCCCh---hhHHHH
Q 038114 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI--------------------------------ESPDL---ASWNAI 121 (170)
Q Consensus 77 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--------------------------------~~p~~---~~~~~l 121 (170)
++..+-.+...+...|+.++|.+++++..+.... ..|+. ....++
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sL 341 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRAL 341 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 4555556666666777777777776655332110 13333 344566
Q ss_pred HHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccccC
Q 038114 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 122 i~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~~ 169 (170)
-..+.+.|++++|.+.|+........|+...+..+...+.+.|+.+++
T Consensus 342 g~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 342 GQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEA 389 (409)
T ss_pred HHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 778889999999999999666666689999999999999888886653
No 52
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.23 E-value=7.7e-05 Score=61.21 Aligned_cols=153 Identities=6% Similarity=0.053 Sum_probs=102.6
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcC-----CCCCHHHHHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK-----SQPDVVLQNYILNM 87 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~ 87 (170)
.+-++...|+..++++.|+.+ +..+.+.-..+-.++-.+|...+.+++|..+|..+.... ..++......|..+
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l-~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA 376 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAM-EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS 376 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHh-hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence 477778888888888888888 777766556677888888888888888888888876542 23344446778888
Q ss_pred HHcCCCHHHHHHHHhhcccCCC-----------CCCCChhh-HHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 038114 88 YGKCGSLEDARVVSDEMPQRNV-----------IESPDLAS-WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155 (170)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~~~-----------~~~p~~~~-~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ 155 (170)
|...+++++|..+++.+.+... .+.||-.. +..++..+...|+..+|++.++++.... .-|......
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~ 455 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIA 455 (822)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 8888888888888887765211 01333333 3334566777788888888888885432 335555555
Q ss_pred HHHHhcCCCccc
Q 038114 156 LLCACTSPSNVL 167 (170)
Q Consensus 156 ll~~~~~~g~~e 167 (170)
+-+.+...|...
T Consensus 456 ~A~v~~~Rg~p~ 467 (822)
T PRK14574 456 LASIYLARDLPR 467 (822)
T ss_pred HHHHHHhcCCHH
Confidence 555555544443
No 53
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.22 E-value=9.2e-06 Score=58.84 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=38.1
Q ss_pred hhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHH
Q 038114 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV---LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNA 120 (170)
Q Consensus 44 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ 120 (170)
......+..+.+.++++.|.+.++.|.+.. .|.. ...+.+..+.-...+++|..+|+++.+. . .+++.+.|.
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~--~~t~~~lng 206 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQID--EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-F--GSTPKLLNG 206 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S----SHHHHHH
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-c--CCCHHHHHH
Confidence 333444444455555555555555554431 2211 1112222222222355555555554432 2 234444455
Q ss_pred HHHHHhCCCChHHHHHHHHHH
Q 038114 121 IIAGVASPSNANEAMSLFSEM 141 (170)
Q Consensus 121 li~~~~~~g~~~~a~~l~~~m 141 (170)
+.-+....|++++|.+++.+-
T Consensus 207 ~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 207 LAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp HHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 555555555555555554443
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=2.6e-05 Score=56.56 Aligned_cols=147 Identities=12% Similarity=-0.005 Sum_probs=107.3
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
+-++|.+.|.+.+|...|+.- ... .|.+.||..|-++|.+...+..|+.++.+-.+. ++.|+....-.-+.+-..+
T Consensus 229 ~gkCylrLgm~r~Aekqlqss-L~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSS-LTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHH-hhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 678889999999999988876 443 467778888999999999999999999988776 3445555555666777778
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccc
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e 167 (170)
+.++|.++|+...+... .++...-.+-.+|.-.++.+.|++.++.+.+.|+. +...|..+--+|.-.+.+|
T Consensus 305 ~~~~a~~lYk~vlk~~~---~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHP---INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred hHHHHHHHHHHHHhcCC---ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 88899999887765433 34455556667777788889999999988888865 4444544444444444433
No 55
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.17 E-value=0.00011 Score=55.83 Aligned_cols=91 Identities=9% Similarity=-0.001 Sum_probs=50.8
Q ss_pred hhhcccCCHHHHHHHHHHHHhhCCCCcchhhHH--HHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 15 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
.+..+.|+++.+...+.++ .+ ..|+..... .....+...|+++.|...++.+.+.. +-++.....+...|.+.|
T Consensus 126 ~aA~~~g~~~~A~~~l~~A-~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~g 201 (398)
T PRK10747 126 EAAQQRGDEARANQHLERA-AE--LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTG 201 (398)
T ss_pred HHHHHCCCHHHHHHHHHHH-Hh--cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHH
Confidence 3335666666666666666 32 223332222 22345555666666666666666553 224556666666666666
Q ss_pred CHHHHHHHHhhcccCCC
Q 038114 93 SLEDARVVSDEMPQRNV 109 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~ 109 (170)
++++|.+++..+.+.+.
T Consensus 202 dw~~a~~~l~~l~k~~~ 218 (398)
T PRK10747 202 AWSSLLDILPSMAKAHV 218 (398)
T ss_pred hHHHHHHHHHHHHHcCC
Confidence 66666666666654433
No 56
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.15 E-value=0.00012 Score=46.67 Aligned_cols=107 Identities=7% Similarity=-0.076 Sum_probs=73.9
Q ss_pred hhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHH
Q 038114 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIA 123 (170)
Q Consensus 44 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~ 123 (170)
.....+...+...|++++|.+.|......+ +.+...+..+-..+.+.|++++|...|+.....+. .+...+..+-.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~la~ 93 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP---DDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CChHHHHHHHH
Confidence 345555666677788888888888877654 34677777778888888888888888887655433 34556666667
Q ss_pred HHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 038114 124 GVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156 (170)
Q Consensus 124 ~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~l 156 (170)
.+...|++++|...|+...+. .|+...+..+
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 124 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI--CGENPEYSEL 124 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--ccccchHHHH
Confidence 777888888888888766654 3555554433
No 57
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.13 E-value=0.00024 Score=49.79 Aligned_cols=158 Identities=10% Similarity=-0.080 Sum_probs=109.4
Q ss_pred hhHhHHHhhhcccCCHHHHHHHHHHHHhhCCC-Ccc-hhhHHHHHHHhhcccchHHHHHHHHHHHhcCC-CCC-HHHHHH
Q 038114 8 QLRFTFYNSQPIQNLYNEALVAFDFLQNNTNF-RIR-PSTYACLISTCSSLRSLQLGRKVHDHILSSKS-QPD-VVLQNY 83 (170)
Q Consensus 8 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~-~~~~~~ 83 (170)
...+.+...+.+.|+++.|...|++. ..... .|. ...+..+-.++...|+++.|...++.+.+... .+. ..++..
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~-~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEAL-ESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 33455788899999999999999988 44321 121 24667778888999999999999999987532 222 123444
Q ss_pred HHHHHHcC--------CCHHHHHHHHhhcccCCCCCCCChhhH-----------------HHHHHHHhCCCChHHHHHHH
Q 038114 84 ILNMYGKC--------GSLEDARVVSDEMPQRNVIESPDLASW-----------------NAIIAGVASPSNANEAMSLF 138 (170)
Q Consensus 84 li~~~~~~--------~~~~~a~~~~~~m~~~~~~~~p~~~~~-----------------~~li~~~~~~g~~~~a~~l~ 138 (170)
+-.++.+. |++++|.+.|+....... . +...+ -.+...+.+.|++.+|...+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 189 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP--N-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF 189 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC--C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 44445443 678999999998876533 1 11111 13345677889999999999
Q ss_pred HHHHhCC--CCCCHhhHHHHHHHhcCCCccccC
Q 038114 139 SEMRDRE--LIPDGLTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 139 ~~m~~~~--~~p~~~t~~~ll~~~~~~g~~e~~ 169 (170)
.+..... -......+..+..++.+.|+.+++
T Consensus 190 ~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A 222 (235)
T TIGR03302 190 ETVVENYPDTPATEEALARLVEAYLKLGLKDLA 222 (235)
T ss_pred HHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 9987652 222456788999999999887754
No 58
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.13 E-value=0.00033 Score=45.50 Aligned_cols=126 Identities=9% Similarity=0.056 Sum_probs=90.6
Q ss_pred hHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCc--chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCC--HHHHHH
Q 038114 9 LRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRI--RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD--VVLQNY 83 (170)
Q Consensus 9 ~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ 83 (170)
..|. ++..+ ..++...+...++.+ ......- .....-.+-..+...|++++|...|+........++ ....-.
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l-~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQL-AKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHH-HHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 3455 55555 589999999999998 5442211 112233344667889999999999999998763333 234445
Q ss_pred HHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHH
Q 038114 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140 (170)
Q Consensus 84 li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~ 140 (170)
|-..+...|++++|+..++....... ....+...-..+.+.|++++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~----~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAF----KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcch----HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67788889999999999987554433 344666777999999999999999875
No 59
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.12 E-value=0.00023 Score=60.91 Aligned_cols=144 Identities=12% Similarity=0.091 Sum_probs=109.5
Q ss_pred hHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 038114 11 FTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90 (170)
Q Consensus 11 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 90 (170)
+++-..+.+.|++++|+..|++. .... +.+...+..+...+...|++++|.+.++...+.. +.+...+..+-.++.+
T Consensus 607 ~~La~~~~~~g~~~~A~~~y~~a-l~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~ 683 (1157)
T PRK11447 607 LTLADWAQQRGDYAAARAAYQRV-LTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAA 683 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHh
Confidence 33788899999999999999998 5543 3467789999999999999999999999887653 2346677778888999
Q ss_pred CCCHHHHHHHHhhcccCCCCCCC---ChhhHHHHHHHHhCCCChHHHHHHHHHHHh-CCCCCC----HhhHHHHH
Q 038114 91 CGSLEDARVVSDEMPQRNVIESP---DLASWNAIIAGVASPSNANEAMSLFSEMRD-RELIPD----GLTVRSLL 157 (170)
Q Consensus 91 ~~~~~~a~~~~~~m~~~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~~p~----~~t~~~ll 157 (170)
.|++++|.++|+..........| +...+..+...+...|++++|+..|+.... .|+.|+ ..+++.++
T Consensus 684 ~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p~~~~~~~~l~ 758 (1157)
T PRK11447 684 LGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTRPQDNDTFTRLT 758 (1157)
T ss_pred CCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHh
Confidence 99999999999998764321022 234566667888999999999999997753 345432 23455544
No 60
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.12 E-value=0.00019 Score=50.32 Aligned_cols=121 Identities=14% Similarity=0.022 Sum_probs=64.1
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
......+.|++..|...|.+. .. .-++|..+|+.+=-+|.+.|++++|..-|.+..+-- .-++...|.+--.|.-.|
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA-~~-l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~g 182 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKA-AR-LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRG 182 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHH-hc-cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcC
Confidence 344555556666666666555 22 223555566666666666666666666665555532 223445555555555566
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHH
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~ 139 (170)
+++.|+.++..-...+. -|...-..+.......|+++.|..+..
T Consensus 183 d~~~A~~lll~a~l~~~---ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 183 DLEDAETLLLPAYLSPA---ADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred CHHHHHHHHHHHHhCCC---CchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 66666666555544332 233444444445555566666555544
No 61
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.12 E-value=0.00038 Score=50.72 Aligned_cols=123 Identities=11% Similarity=-0.117 Sum_probs=84.5
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
+-..+.+.|++++|...|++. .... +-++..|+.+-..+...|+++.|...|+...+.. +-+...|..+-..+...|
T Consensus 70 ~g~~~~~~g~~~~A~~~~~~A-l~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g 146 (296)
T PRK11189 70 RGVLYDSLGLRALARNDFSQA-LALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGG 146 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHH-HHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 566677888888888888877 5433 2345678888888888888888888888887653 223667777777888888
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
++++|.+.|+...+.. |+..........+...++.++|...|.+..
T Consensus 147 ~~~eA~~~~~~al~~~----P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 147 RYELAQDDLLAFYQDD----PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred CHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 8888888888776543 322212222223345677888888886644
No 62
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.11 E-value=8.2e-05 Score=53.95 Aligned_cols=124 Identities=11% Similarity=0.034 Sum_probs=90.8
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHh----hcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTC----SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY 88 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 88 (170)
.+..|.+.++++.|.+.++.| ++.. .|. +...+..++ ...+.+.+|..+|+++.+. ..+++.+.|.+..++
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~-~~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~ 211 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNM-QQID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCH 211 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH-HCCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HhcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHH
Confidence 488999999999999999999 6542 333 444444444 3345799999999998664 578899999999999
Q ss_pred HcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCCh-HHHHHHHHHHHhC
Q 038114 89 GKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNA-NEAMSLFSEMRDR 144 (170)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~l~~~m~~~ 144 (170)
...|++++|++++.+....+. -+..+...+|-.....|.. +.+.+++.+++..
T Consensus 212 l~~~~~~eAe~~L~~al~~~~---~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 212 LQLGHYEEAEELLEEALEKDP---NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHCT-HHHHHHHHHHHCCC-C---CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHhCCHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999998776544 2445555666666666766 7788899988764
No 63
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.10 E-value=0.00039 Score=57.23 Aligned_cols=141 Identities=9% Similarity=0.024 Sum_probs=66.3
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchh---hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPS---TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYG 89 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 89 (170)
++..+...|+.++|+..+++. . .|+.. ....+...+...|++++|.++|+++.+.. +-++..+..++..|.
T Consensus 74 ll~l~~~~G~~~~A~~~~eka-~----~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~ 147 (822)
T PRK14574 74 WLQIAGWAGRDQEVIDVYERY-Q----SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQA 147 (822)
T ss_pred HHHHHHHcCCcHHHHHHHHHh-c----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHh
Confidence 444445556666666555555 2 22111 22222334455566666666666665543 112444445555566
Q ss_pred cCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCC
Q 038114 90 KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164 (170)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g 164 (170)
..++.++|++.++..... .|+...+-.++..+...++..+|++.++++.+.. .-+...+.-+..+..+.|
T Consensus 148 ~~~q~~eAl~~l~~l~~~----dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 148 DAGRGGVVLKQATELAER----DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNR 217 (822)
T ss_pred hcCCHHHHHHHHHHhccc----CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 666666666666655544 2333344333333333344444666666655442 112333344444444443
No 64
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.10 E-value=0.00046 Score=48.39 Aligned_cols=151 Identities=9% Similarity=-0.027 Sum_probs=114.5
Q ss_pred HHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 038114 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91 (170)
Q Consensus 12 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 91 (170)
++-..+-..|+-+.+..+..+. . ....-|............+.|++..|...+.+...-. ++|...||.+--+|.+.
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~-~-~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKS-A-IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHhcccccchHHHHhhh-h-ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 3555566666666666666654 2 1223344566678899999999999999999997654 77899999999999999
Q ss_pred CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccccC
Q 038114 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~~ 169 (170)
|++++|..-|.+..+... -+...+|.+...+.-.|+.+.|..++..-...+.. |...-..|.......|+++++
T Consensus 148 Gr~~~Ar~ay~qAl~L~~---~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 148 GRFDEARRAYRQALELAP---NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred cChhHHHHHHHHHHHhcc---CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHH
Confidence 999999999998776544 23357788888888889999999999988877644 445556666677777777665
No 65
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.07 E-value=0.00027 Score=45.90 Aligned_cols=94 Identities=13% Similarity=-0.008 Sum_probs=81.1
Q ss_pred hHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 038114 11 FTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90 (170)
Q Consensus 11 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 90 (170)
+++-..+.+.|++++|...|++. .... +.+...+..+-.++.+.|++++|...|....+.. +.++..+..+-.++.+
T Consensus 28 ~~~g~~~~~~g~~~~A~~~~~~a-l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 28 YASGYASWQEGDYSRAVIDFSWL-VMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 44678889999999999999998 5443 2467788899999999999999999999999864 4578899999999999
Q ss_pred CCCHHHHHHHHhhcccC
Q 038114 91 CGSLEDARVVSDEMPQR 107 (170)
Q Consensus 91 ~~~~~~a~~~~~~m~~~ 107 (170)
.|++++|...|+.....
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988765
No 66
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.00033 Score=49.44 Aligned_cols=137 Identities=15% Similarity=0.109 Sum_probs=97.6
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYG---- 89 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~---- 89 (170)
..-|...|++++|+...+.. -+......=...+.+..+++.|.+..+.|++-. +-.|.+-|-.++.
T Consensus 115 a~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhc
Confidence 66788999999999888775 223333333444557788999999999998643 3445555555444
Q ss_pred cCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCC
Q 038114 90 KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164 (170)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g 164 (170)
..+..+.|.-+|++|.++- .|+.-+-|-...++...|++++|+.++++...+.-+ +..|...++-+-...|
T Consensus 185 ggek~qdAfyifeE~s~k~---~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKT---PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLG 255 (299)
T ss_pred cchhhhhHHHHHHHHhccc---CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhC
Confidence 4567999999999998754 478888899999999999999999999998876433 3444444444433333
No 67
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.00 E-value=0.00018 Score=51.94 Aligned_cols=147 Identities=10% Similarity=0.079 Sum_probs=107.6
Q ss_pred hHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038114 9 LRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNM 87 (170)
Q Consensus 9 ~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 87 (170)
.+|. +|...-+.+..+.|+.+|.+..+...+..+.....++|..++ .++.+.|.++|+...+. +..+...|..-++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-NKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-CS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4577 789999999999999999999333344566666666665543 35677799999999876 56678899999999
Q ss_pred HHcCCCHHHHHHHHhhcccCCCCCCC-ChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHh
Q 038114 88 YGKCGSLEDARVVSDEMPQRNVIESP-DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160 (170)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~ 160 (170)
+.+.++.+.|..+|+..... +.... ....|...+.-=.+.|+.+.+..+...+.+. .|+..++..+++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 99999999999999988765 30022 3358999998889999999999999888764 45555555554433
No 68
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.99 E-value=0.00059 Score=52.00 Aligned_cols=124 Identities=7% Similarity=-0.100 Sum_probs=94.9
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhH-HHHHHHh--hcccchHHHHHHHHHHHhcCCCCCH--HHHHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTY-ACLISTC--SSLRSLQLGRKVHDHILSSKSQPDV--VLQNYILNM 87 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~~~--~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~ 87 (170)
+...+...|+.+.|.++++.. .+.. |+.... -.++..+ ...++.+.+.+.++...+.. +-|+ ....++-..
T Consensus 269 ~a~~l~~~g~~~~A~~~l~~~-l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l 344 (409)
T TIGR00540 269 LAEHLIDCDDHDSAQEIIFDG-LKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQL 344 (409)
T ss_pred HHHHHHHCCChHHHHHHHHHH-HhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHH
Confidence 688999999999999999998 5543 333311 0122222 34577788888888777652 3345 677788899
Q ss_pred HHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 88 YGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
+.+.|++++|.+.|+....... .|+...+..+...+.+.|+.++|.+++++-.
T Consensus 345 ~~~~~~~~~A~~~le~a~a~~~--~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 345 LMKHGEFIEAADAFKNVAACKE--QLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHcccHHHHHHHHHHhHHhhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999996555555 7888899999999999999999999998753
No 69
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.98 E-value=0.00034 Score=50.74 Aligned_cols=151 Identities=9% Similarity=-0.011 Sum_probs=99.4
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCH----HHHHHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV----VLQNYILNMY 88 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~ 88 (170)
|-.-|...|-+|.|..+|..+ ...+. --....-.|+..|-...+|++|..+-..+.+.+-.+.. ..|--|-..+
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L-~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQL-VDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHH-hcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 455566778888888888777 44321 22335566777777778888888887777765543332 2344444555
Q ss_pred HcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCcccc
Q 038114 89 GKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~ 168 (170)
....+++.|..++.+..+.+. -++..--.+-......|++++|.+.++...+++..--..+...|..+|...|+.++
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~---~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 191 LASSDVDRARELLKKALQADK---KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCc---cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 556677777777776554422 12222233346677788899999888888888766667778888888888887765
No 70
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.98 E-value=0.00048 Score=51.01 Aligned_cols=128 Identities=11% Similarity=0.012 Sum_probs=98.1
Q ss_pred hHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHH
Q 038114 11 FTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILS-SKSQPDVVLQNYILNMYG 89 (170)
Q Consensus 11 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~ 89 (170)
-.++.-+.+.|..++|.++..+. .+++..|+ ... +-.+.+.++.+.-.+..++-.+ .+. ++..+.+|-..|.
T Consensus 267 ~~~a~~li~l~~~~~A~~~i~~~-Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~ 339 (400)
T COG3071 267 VAYAERLIRLGDHDEAQEIIEDA-LKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLAL 339 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHH-HHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHH
Confidence 34678888999999999999998 88877777 222 2334556666665555555544 343 4588999999999
Q ss_pred cCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCC
Q 038114 90 KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD 149 (170)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~ 149 (170)
+.+.|.+|...|+.-. .. +|+..+|+.+-.++.+.|+.++|.+++++-...-..|+
T Consensus 340 k~~~w~kA~~~leaAl--~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 340 KNKLWGKASEALEAAL--KL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HhhHHHHHHHHHHHHH--hc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 9999999999999444 44 88999999999999999999999999998764434443
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.97 E-value=0.002 Score=46.96 Aligned_cols=92 Identities=10% Similarity=-0.052 Sum_probs=50.6
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCc-chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRI-RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 85 (170)
...|+ +-..+...|++++|...|++. .+. .| +...+..+-.++...|++++|.+.|+...+.. |+-.......
T Consensus 98 ~~a~~~lg~~~~~~g~~~~A~~~~~~A-l~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~ 172 (296)
T PRK11189 98 ADAYNYLGIYLTQAGNFDAAYEAFDSV-LEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWL 172 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH-HHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 34455 566667777777777777666 432 23 23455555555666677777777777666542 2211112222
Q ss_pred HHHHcCCCHHHHHHHHhhc
Q 038114 86 NMYGKCGSLEDARVVSDEM 104 (170)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m 104 (170)
..+...+++++|...|...
T Consensus 173 ~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 173 YLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHccCCHHHHHHHHHHH
Confidence 2233455677777777543
No 72
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.94 E-value=0.00047 Score=43.87 Aligned_cols=92 Identities=16% Similarity=0.072 Sum_probs=78.1
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
+...+.+.|++++|.+.|+.. ...+ +.+...+..+-.++...|++++|...+++..+.+ +.+...+..+-..|...|
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~-~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLL-AAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHH-HHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcC
Confidence 678888999999999999998 5543 3467788888888999999999999999988765 445777888888999999
Q ss_pred CHHHHHHHHhhcccC
Q 038114 93 SLEDARVVSDEMPQR 107 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~ 107 (170)
++++|.+.|+...+.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 100 EPESALKALDLAIEI 114 (135)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987765
No 73
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.94 E-value=0.00018 Score=41.79 Aligned_cols=89 Identities=16% Similarity=0.067 Sum_probs=42.0
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
+...+...|++++|...+++. .... +.+...+..+-..+...+++++|.+.+....+.. +.+..++..+...+...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKA-LELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHH-HhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 444445555555555555554 3221 1122344444444445555555555555554432 222334445555555555
Q ss_pred CHHHHHHHHhhc
Q 038114 93 SLEDARVVSDEM 104 (170)
Q Consensus 93 ~~~~a~~~~~~m 104 (170)
+++.|...+...
T Consensus 83 ~~~~a~~~~~~~ 94 (100)
T cd00189 83 KYEEALEAYEKA 94 (100)
T ss_pred hHHHHHHHHHHH
Confidence 555555555443
No 74
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.93 E-value=0.00022 Score=53.76 Aligned_cols=115 Identities=12% Similarity=0.056 Sum_probs=92.3
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHH
Q 038114 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGV 125 (170)
Q Consensus 46 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~ 125 (170)
..+|++.+...++++.|..+|+++.+.. |+ ....+.+.+...++..+|.+++.+...... -|....+.....|
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p---~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP---QDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC---CCHHHHHHHHHHH
Confidence 4566777778899999999999998774 44 455688888889999999999988775433 3455666666778
Q ss_pred hCCCChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHhcCCCccccC
Q 038114 126 ASPSNANEAMSLFSEMRDRELIPDGL-TVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 126 ~~~g~~~~a~~l~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~e~~ 169 (170)
...++.+.|+.+.++.... .|+.. +|..|..+|.+.|++|.+
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~A 287 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENA 287 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999988854 56555 899999999999998864
No 75
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.87 E-value=0.001 Score=41.05 Aligned_cols=93 Identities=11% Similarity=-0.038 Sum_probs=37.5
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCC--CcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCC--CCCHHHHHHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNF--RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQNYILNMY 88 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~ 88 (170)
+...+.+.|++++|.+.|+++ ..... ......+..+-.++.+.|+++.|...|+.+..... ......+..+..++
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAF-LKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 444444445555555555444 22110 00122333344444444444444444444443210 11123334444444
Q ss_pred HcCCCHHHHHHHHhhccc
Q 038114 89 GKCGSLEDARVVSDEMPQ 106 (170)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~ 106 (170)
.+.|++++|.+.+++..+
T Consensus 87 ~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHhCChHHHHHHHHHHHH
Confidence 444444444444444443
No 76
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.84 E-value=0.00062 Score=43.13 Aligned_cols=98 Identities=13% Similarity=0.022 Sum_probs=55.3
Q ss_pred chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHH
Q 038114 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121 (170)
Q Consensus 42 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l 121 (170)
|..++..+|.++++.|+.+....+.+..- |+.++... ..+. --..... .|+..+..++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl--~Pt~~lL~AI 58 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPL--YPTSRLLIAI 58 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCC--CCCHHHHHHH
Confidence 45567777777777777776666665443 22111100 0000 1112222 6667777777
Q ss_pred HHHHhCCCChHHHHHHHHHHHhC-CCCCCHhhHHHHHHHhc
Q 038114 122 IAGVASPSNANEAMSLFSEMRDR-ELIPDGLTVRSLLCACT 161 (170)
Q Consensus 122 i~~~~~~g~~~~a~~l~~~m~~~-~~~p~~~t~~~ll~~~~ 161 (170)
+.+|+..|++..|+++.+...+. ++..+..+|..|++-+.
T Consensus 59 v~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 59 VHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 77777777777777777766553 56666667777666554
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.83 E-value=0.00049 Score=53.47 Aligned_cols=161 Identities=14% Similarity=0.035 Sum_probs=114.1
Q ss_pred hHhH-HHhhhcccCCHHHHHHHHHHHHhh----CCCCc-chh-hHHHHHHHhhcccchHHHHHHHHHHHhc---CCCC--
Q 038114 9 LRFT-FYNSQPIQNLYNEALVAFDFLQNN----TNFRI-RPS-TYACLISTCSSLRSLQLGRKVHDHILSS---KSQP-- 76 (170)
Q Consensus 9 ~~~~-li~~~~~~~~~~~a~~~~~~m~~~----~~~~p-~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~-- 76 (170)
.+++ |-..|.+.|++++|...++....- .|..+ ... -++.+...|...+++++|..++....+- -+.+
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 3444 778899999999999888775221 12222 222 4667777788899999999988866542 1222
Q ss_pred --CHHHHHHHHHHHHcCCCHHHHHHHHhhcccC----CC-CCCCChhhHHHHHHHHhCCCChHHHHHHHHHHH----hCC
Q 038114 77 --DVVLQNYILNMYGKCGSLEDARVVSDEMPQR----NV-IESPDLASWNAIIAGVASPSNANEAMSLFSEMR----DRE 145 (170)
Q Consensus 77 --~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~----~~~ 145 (170)
-..+++.|-..|.+.|++++|+++|++.... +. ...-.-..++.+-..|.+.+..+.|.++|.+-. ..|
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 2568999999999999999999999976421 11 001113467888899999999999999888654 333
Q ss_pred C-CCC-HhhHHHHHHHhcCCCccccC
Q 038114 146 L-IPD-GLTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 146 ~-~p~-~~t~~~ll~~~~~~g~~e~~ 169 (170)
. .|+ ..||..|..+|.+.|++|.+
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~e~a 469 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNYEAA 469 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccHHHH
Confidence 2 233 35699999999999998865
No 78
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=0.00014 Score=56.91 Aligned_cols=121 Identities=12% Similarity=0.045 Sum_probs=66.8
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCC--------------------------------cchhhHHHHHHHhhcccchH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFR--------------------------------IRPSTYACLISTCSSLRSLQ 60 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~--------------------------------p~~~~~~~li~~~~~~~~~~ 60 (170)
+-++|...+++++|..+|+..++....+ -.+.+|+++=++|.-.++.+
T Consensus 359 ~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~ 438 (638)
T KOG1126|consen 359 LGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHD 438 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHH
Confidence 4778888888888888888885444333 23345555555555555555
Q ss_pred HHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHH---HHHhCCCChHHHHH
Q 038114 61 LGRKVHDHILSSKSQP-DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII---AGVASPSNANEAMS 136 (170)
Q Consensus 61 ~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li---~~~~~~g~~~~a~~ 136 (170)
.|.+.|+...+- .| ...+|+.+-.-+.....++.|...|+... ..|...||++- -.|.+.+.++.|+-
T Consensus 439 ~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al------~~~~rhYnAwYGlG~vy~Kqek~e~Ae~ 510 (638)
T KOG1126|consen 439 TAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL------GVDPRHYNAWYGLGTVYLKQEKLEFAEF 510 (638)
T ss_pred HHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh------cCCchhhHHHHhhhhheeccchhhHHHH
Confidence 555555555442 22 24455555555555555555555555433 23334555442 44555555555555
Q ss_pred HHHHH
Q 038114 137 LFSEM 141 (170)
Q Consensus 137 l~~~m 141 (170)
.|+.-
T Consensus 511 ~fqkA 515 (638)
T KOG1126|consen 511 HFQKA 515 (638)
T ss_pred HHHhh
Confidence 55543
No 79
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.82 E-value=0.00035 Score=54.73 Aligned_cols=153 Identities=12% Similarity=0.075 Sum_probs=87.3
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhCC------------------------------CCcchhhHHHHH---HHh
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNTN------------------------------FRIRPSTYACLI---STC 53 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~------------------------------~~p~~~~~~~li---~~~ 53 (170)
..+|. +-..|+-.++.+.|++.|++. .+.. +.+|+..|+++- ..|
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RA-iQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy 499 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRA-IQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVY 499 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHh-hccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhe
Confidence 34677 677777777777777777766 3211 334444444432 234
Q ss_pred hcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHH
Q 038114 54 SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133 (170)
Q Consensus 54 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 133 (170)
.+.++++.|+-.|....+-+ +-+.+....+...+-+.|+.++|+++|++....+. +-. .+-=.-...+...++.++
T Consensus 500 ~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~--kn~-l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 500 LKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP--KNP-LCKYHRASILFSLGRYVE 575 (638)
T ss_pred eccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC--CCc-hhHHHHHHHHHhhcchHH
Confidence 55566666666665555433 22345555555666677777777777776655444 222 222223344455577888
Q ss_pred HHHHHHHHHhCCCCCCHhh-HHHHHHHhcCCCccc
Q 038114 134 AMSLFSEMRDRELIPDGLT-VRSLLCACTSPSNVL 167 (170)
Q Consensus 134 a~~l~~~m~~~~~~p~~~t-~~~ll~~~~~~g~~e 167 (170)
|+..++++++ +.|+..+ |-.+-+.|-+.|..+
T Consensus 576 al~~LEeLk~--~vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 576 ALQELEELKE--LVPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred HHHHHHHHHH--hCcchHHHHHHHHHHHHHHccch
Confidence 8888887774 3555544 555555666555543
No 80
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.79 E-value=0.00021 Score=52.01 Aligned_cols=132 Identities=10% Similarity=-0.084 Sum_probs=97.7
Q ss_pred ccchhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhh-HHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHH
Q 038114 5 LKTQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPST-YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82 (170)
Q Consensus 5 ~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 82 (170)
.|-..+|- |-+.|.+..++..|+.+|.+- .. ..|-.+| .+-+-+.+...++.+++.++|+...+.. ..++....
T Consensus 253 ~~~~dTfllLskvY~ridQP~~AL~~~~~g-ld--~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiA 328 (478)
T KOG1129|consen 253 FPHPDTFLLLSKVYQRIDQPERALLVIGEG-LD--SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIA 328 (478)
T ss_pred CCchhHHHHHHHHHHHhccHHHHHHHHhhh-hh--cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-Cccceeee
Confidence 45566788 688999999999999999887 33 2344444 4455666777788888888888887764 44667777
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHh
Q 038114 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 83 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 143 (170)
++-..|.-.++++-|++.|+.+.+.|+ -+...|+.+-.+|.-.++++.++..|..-..
T Consensus 329 cia~~yfY~~~PE~AlryYRRiLqmG~---~speLf~NigLCC~yaqQ~D~~L~sf~RAls 386 (478)
T KOG1129|consen 329 CIAVGYFYDNNPEMALRYYRRILQMGA---QSPELFCNIGLCCLYAQQIDLVLPSFQRALS 386 (478)
T ss_pred eeeeccccCCChHHHHHHHHHHHHhcC---CChHHHhhHHHHHHhhcchhhhHHHHHHHHh
Confidence 777788888888888888888888887 4556777777777777777777777766543
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.79 E-value=0.001 Score=49.41 Aligned_cols=88 Identities=8% Similarity=0.078 Sum_probs=41.6
Q ss_pred HhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCCh--hhHHHHHHHHhCCC
Q 038114 52 TCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDL--ASWNAIIAGVASPS 129 (170)
Q Consensus 52 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~--~~~~~li~~~~~~g 129 (170)
.+...|++++|...+++..+.. +.+...+..+-..|...|++++|...+++....... .|+. ..|..+...+...|
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-~~~~~~~~~~~la~~~~~~G 200 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-SSMLRGHNWWHLALFYLERG 200 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-CcchhHHHHHHHHHHHHHCC
Confidence 3444455555555555555432 223444455555555555555555555544432210 1111 22334445555555
Q ss_pred ChHHHHHHHHHH
Q 038114 130 NANEAMSLFSEM 141 (170)
Q Consensus 130 ~~~~a~~l~~~m 141 (170)
++++|..++++.
T Consensus 201 ~~~~A~~~~~~~ 212 (355)
T cd05804 201 DYEAALAIYDTH 212 (355)
T ss_pred CHHHHHHHHHHH
Confidence 555555555554
No 82
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.0003 Score=54.25 Aligned_cols=142 Identities=15% Similarity=0.002 Sum_probs=109.4
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCc-chhhHHHHHHHhhcccchHHHHHHHHHHHhc------CCCCCHHHHHHHHH
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRI-RPSTYACLISTCSSLRSLQLGRKVHDHILSS------KSQPDVVLQNYILN 86 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~li~ 86 (170)
---|.+.++...|.++|.+. . ++.| |+...+=+=-..-..+.+.+|..+|...... .......+++.|-.
T Consensus 387 gmey~~t~n~kLAe~Ff~~A-~--ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH 463 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQA-L--AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH 463 (611)
T ss_pred HHHHHHhccHHHHHHHHHHH-H--hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence 34567788999999999887 3 3444 5556665555555678899999999877631 11124557999999
Q ss_pred HHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCC
Q 038114 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~ 163 (170)
+|.+.+.+++|...|+....... -|..+|+++-..|...|+++.|.+.|++ ...+.|+-.+...++..+...
T Consensus 464 ~~Rkl~~~~eAI~~~q~aL~l~~---k~~~~~asig~iy~llgnld~Aid~fhK--aL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQKALLLSP---KDASTHASIGYIYHLLGNLDKAIDHFHK--ALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCC---CchhHHHHHHHHHHHhcChHHHHHHHHH--HHhcCCccHHHHHHHHHHHHh
Confidence 99999999999999998765433 4668999999999999999999999995 447899999999888876543
No 83
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.79 E-value=0.0012 Score=40.67 Aligned_cols=102 Identities=8% Similarity=-0.018 Sum_probs=79.3
Q ss_pred hhHHHHHHHhhcccchHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHH
Q 038114 44 STYACLISTCSSLRSLQLGRKVHDHILSSKS--QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121 (170)
Q Consensus 44 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l 121 (170)
.++-.+...+.+.|++++|.+.|..+.+... ......+..+...+.+.|++++|.+.|+...............+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4566677778889999999999999987531 22245677789999999999999999999876432102234567777
Q ss_pred HHHHhCCCChHHHHHHHHHHHhCC
Q 038114 122 IAGVASPSNANEAMSLFSEMRDRE 145 (170)
Q Consensus 122 i~~~~~~g~~~~a~~l~~~m~~~~ 145 (170)
...+...|+.++|...+++..+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 788889999999999999998774
No 84
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.78 E-value=0.00094 Score=45.79 Aligned_cols=109 Identities=14% Similarity=0.069 Sum_probs=84.7
Q ss_pred ccchhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHH-hhcccc--hHHHHHHHHHHHhcCCCCCHHH
Q 038114 5 LKTQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLIST-CSSLRS--LQLGRKVHDHILSSKSQPDVVL 80 (170)
Q Consensus 5 ~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~~~--~~~a~~~~~~m~~~~~~~~~~~ 80 (170)
..+...|. +-..|...|++++|...|++. .+... -+...+..+-.+ +...|+ .++|.+++++..+.. +-+...
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~A-l~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~a 146 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQA-LQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTA 146 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhH
Confidence 34666777 788999999999999999998 55432 355566666665 356666 599999999999875 336889
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHH
Q 038114 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119 (170)
Q Consensus 81 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~ 119 (170)
+..+-..+.+.|++++|...|+++.+... |+..-+.
T Consensus 147 l~~LA~~~~~~g~~~~Ai~~~~~aL~l~~---~~~~r~~ 182 (198)
T PRK10370 147 LMLLASDAFMQADYAQAIELWQKVLDLNS---PRVNRTQ 182 (198)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCccHHH
Confidence 99999999999999999999999987655 4444443
No 85
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.78 E-value=0.0018 Score=45.35 Aligned_cols=132 Identities=9% Similarity=0.006 Sum_probs=92.7
Q ss_pred hHHHhhhcccCCHHHHHHHHHHHHhhCCC-Ccch-hhHHHHHHHhhcc--------cchHHHHHHHHHHHhcCCCCCHHH
Q 038114 11 FTFYNSQPIQNLYNEALVAFDFLQNNTNF-RIRP-STYACLISTCSSL--------RSLQLGRKVHDHILSSKSQPDVVL 80 (170)
Q Consensus 11 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~-~~~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~~~ 80 (170)
+.+...+.+.|++++|...++.+ .+... .|.. .++..+-.++... |+.+.|.+.|..+.+.... +...
T Consensus 74 ~~la~~~~~~~~~~~A~~~~~~~-l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~ 151 (235)
T TIGR03302 74 LDLAYAYYKSGDYAEAIAAADRF-IRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYA 151 (235)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHH-HHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhH
Confidence 33788999999999999999998 54332 1221 1333333334332 7889999999999875322 2222
Q ss_pred HH-----------------HHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHh
Q 038114 81 QN-----------------YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 81 ~~-----------------~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 143 (170)
+. .+-..|.+.|++++|...|++..+.....+.....+..+...+...|++++|..+++.+..
T Consensus 152 ~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 152 PDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 21 3445678889999999999998765331123457888999999999999999999998875
Q ss_pred C
Q 038114 144 R 144 (170)
Q Consensus 144 ~ 144 (170)
.
T Consensus 232 ~ 232 (235)
T TIGR03302 232 N 232 (235)
T ss_pred h
Confidence 4
No 86
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.76 E-value=0.00049 Score=39.85 Aligned_cols=95 Identities=11% Similarity=0.038 Sum_probs=76.8
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHH
Q 038114 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGV 125 (170)
Q Consensus 46 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~ 125 (170)
+..+...+...|++++|...+.+..+.. +.+...+..+...+...+++++|.+.|+....... .+..++..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP---DNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---cchhHHHHHHHHH
Confidence 4556667778899999999999998763 33457788888999999999999999998776544 3446788888999
Q ss_pred hCCCChHHHHHHHHHHHhC
Q 038114 126 ASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 126 ~~~g~~~~a~~l~~~m~~~ 144 (170)
...|+++.|...+....+.
T Consensus 79 ~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 79 YKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHhHHHHHHHHHHHHcc
Confidence 9999999999999887643
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.74 E-value=0.0017 Score=45.06 Aligned_cols=127 Identities=9% Similarity=-0.063 Sum_probs=97.2
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
|--+|.+.|+...|..-+++. .+.. +-+..++..+-..|.+.|+.+.|.+-|+...+.. +-+-.+.|..--.+|..|
T Consensus 41 Lal~YL~~gd~~~A~~nlekA-L~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKA-LEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHH-HHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 567888999999999999888 4432 1244478888888999999999999999888753 334667888888889999
Q ss_pred CHHHHHHHHhhcccC-CCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 038114 93 SLEDARVVSDEMPQR-NVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
.+++|...|+..... .. .--..||..+--+..+.|+++.|...|+.-.+.
T Consensus 118 ~~~eA~q~F~~Al~~P~Y--~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 118 RPEEAMQQFERALADPAY--GEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred ChHHHHHHHHHHHhCCCC--CCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 999999999976543 33 222357777777778889999999888876544
No 88
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.0034 Score=47.89 Aligned_cols=150 Identities=14% Similarity=0.113 Sum_probs=97.6
Q ss_pred hHHHhhhcccCCHHHHHHHHHHHHhhCCC-CcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038114 11 FTFYNSQPIQNLYNEALVAFDFLQNNTNF-RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYG 89 (170)
Q Consensus 11 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 89 (170)
||+--.+-..|+.++|++.|-++ +++ .-+..++..+-+.|....+...|.+++-+...- ++-|+.+.+-|-..|-
T Consensus 528 fniglt~e~~~~ldeald~f~kl---h~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 528 FNIGLTAEALGNLDEALDCFLKL---HAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYD 603 (840)
T ss_pred HHhcccHHHhcCHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhh
Confidence 44444556667788887777665 222 234445556666666666666666666554322 3445667777777777
Q ss_pred cCCCHHHHHHHHhhcc--------------------------------cCCCCCCCChhhHHHHHHHH-hCCCChHHHHH
Q 038114 90 KCGSLEDARVVSDEMP--------------------------------QRNVIESPDLASWNAIIAGV-ASPSNANEAMS 136 (170)
Q Consensus 90 ~~~~~~~a~~~~~~m~--------------------------------~~~~~~~p~~~~~~~li~~~-~~~g~~~~a~~ 136 (170)
+.|+-.+|.+.+-+-- ..- ..|+..-|-.+|..| .|.|++.+|++
T Consensus 604 qegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d 681 (840)
T KOG2003|consen 604 QEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFD 681 (840)
T ss_pred cccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHH
Confidence 7776666665432210 111 289999999998666 45689999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHhcCCCccc
Q 038114 137 LFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 137 l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e 167 (170)
++++... .+.-|..+..-|++.|...|.-|
T Consensus 682 ~yk~~hr-kfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 682 LYKDIHR-KFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHH-hCccchHHHHHHHHHhccccchh
Confidence 9988754 36668888888889888877544
No 89
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.71 E-value=0.0019 Score=52.35 Aligned_cols=125 Identities=9% Similarity=0.064 Sum_probs=104.0
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchh-hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPS-TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 91 (170)
|-....+.|..++|..+++.. .+ +.|+.. ....+..++.+.+++++|....++..... +-+......+-.++.+.
T Consensus 92 La~i~~~~g~~~ea~~~l~~~-~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGI-HQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHH-Hh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHh
Confidence 788888999999999999998 43 456544 67778888999999999999999998874 33577888888899999
Q ss_pred CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 038114 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
|++++|..+|++....+. -+..++-.+-..+-..|+.++|...|+.-.+.
T Consensus 168 g~~~~A~~~y~~~~~~~p---~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 168 GQSEQADACFERLSRQHP---EFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred cchHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999987432 34678888888999999999999999987654
No 90
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.71 E-value=0.0002 Score=56.14 Aligned_cols=128 Identities=16% Similarity=0.113 Sum_probs=66.1
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcc-hhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIR-PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 91 (170)
+-..|-..|.++.|+..|++. ... .|+ +..|+-|-.+.-..|++.+|...|....... .-.....+.|-..|...
T Consensus 292 la~iYyeqG~ldlAI~~Ykra-l~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~ 367 (966)
T KOG4626|consen 292 LACIYYEQGLLDLAIDTYKRA-LEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQ 367 (966)
T ss_pred eEEEEeccccHHHHHHHHHHH-Hhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh
Confidence 334444555555555555554 221 222 2345555555555555555555555555432 11244555555555555
Q ss_pred CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCC
Q 038114 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD 149 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~ 149 (170)
|.++.|.++|....+-.. --...+|.+...|-..|+.++|...+++-. .+.|+
T Consensus 368 ~~~e~A~~ly~~al~v~p---~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal--rI~P~ 420 (966)
T KOG4626|consen 368 GKIEEATRLYLKALEVFP---EFAAAHNNLASIYKQQGNLDDAIMCYKEAL--RIKPT 420 (966)
T ss_pred ccchHHHHHHHHHHhhCh---hhhhhhhhHHHHHHhcccHHHHHHHHHHHH--hcCch
Confidence 666666655554443211 112456666666666677777776666544 34554
No 91
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.0018 Score=49.15 Aligned_cols=158 Identities=12% Similarity=-0.007 Sum_probs=116.8
Q ss_pred cchhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038114 6 KTQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84 (170)
Q Consensus 6 ~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 84 (170)
+....|+ +-+-|....+...|.+-|+.. .+-+ +-|-..|-.|=.+|.-.+...=|+-.|++..+-. +-|+..|.+|
T Consensus 362 ~~~~aWTLmGHEyvEmKNt~AAi~sYRrA-vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aL 438 (559)
T KOG1155|consen 362 KYLSAWTLMGHEYVEMKNTHAAIESYRRA-VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVAL 438 (559)
T ss_pred chhHHHHHhhHHHHHhcccHHHHHHHHHH-HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHH
Confidence 3456788 578888888888888888887 3321 2355677888888888888888888888887753 5579999999
Q ss_pred HHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC----C-CCCCHhhHHH-HHH
Q 038114 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR----E-LIPDGLTVRS-LLC 158 (170)
Q Consensus 85 i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~-~~p~~~t~~~-ll~ 158 (170)
-.+|.+.++.++|.+.|......|- .+...+..+...+-+.++.++|...|++-.+. | +.|...--.. |-.
T Consensus 439 G~CY~kl~~~~eAiKCykrai~~~d---te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~ 515 (559)
T KOG1155|consen 439 GECYEKLNRLEEAIKCYKRAILLGD---TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAE 515 (559)
T ss_pred HHHHHHhccHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 9999999999999999998876554 34568889999999999999999988877652 4 3332222222 333
Q ss_pred HhcCCCccccC
Q 038114 159 ACTSPSNVLYL 169 (170)
Q Consensus 159 ~~~~~g~~e~~ 169 (170)
-+.+.++++++
T Consensus 516 ~f~k~~~~~~A 526 (559)
T KOG1155|consen 516 YFKKMKDFDEA 526 (559)
T ss_pred HHHhhcchHHH
Confidence 44556655543
No 92
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.68 E-value=0.0029 Score=46.10 Aligned_cols=129 Identities=10% Similarity=0.032 Sum_probs=93.7
Q ss_pred cccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhc-CCCCCH--HHHHHHHHHHHcCCCH
Q 038114 18 PIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS-KSQPDV--VLQNYILNMYGKCGSL 94 (170)
Q Consensus 18 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~--~~~~~li~~~~~~~~~ 94 (170)
.-+.+.++|.++|-+| .+.. +-+..+--+|=+.|-+.|+.+.|.+++..+.++ +.+.+. ...-.|-+=|.+.|-+
T Consensus 46 LLs~Q~dKAvdlF~e~-l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 46 LLSNQPDKAVDLFLEM-LQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HhhcCcchHHHHHHHH-HhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 3457889999999999 4411 122234456777888999999999999999875 233222 2333455567788999
Q ss_pred HHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHh
Q 038114 95 EDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL 151 (170)
Q Consensus 95 ~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~ 151 (170)
+.|+.+|..+.+.+. .-...--.++..|-...+|++|++.-+++.+.+-.+..+
T Consensus 124 DRAE~~f~~L~de~e---fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~ 177 (389)
T COG2956 124 DRAEDIFNQLVDEGE---FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV 177 (389)
T ss_pred hHHHHHHHHHhcchh---hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh
Confidence 999999999887544 234567788899999999999999999998776555444
No 93
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.65 E-value=0.0022 Score=42.66 Aligned_cols=122 Identities=10% Similarity=-0.086 Sum_probs=79.9
Q ss_pred chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHH
Q 038114 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP--DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119 (170)
Q Consensus 42 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~ 119 (170)
....+..+...+...|++++|...|.........+ ...+|..+-..|...|++++|.+.++....... ....+++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~---~~~~~~~ 110 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP---FLPQALN 110 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---CcHHHHH
Confidence 34456777777778899999999999887653222 245788888999999999999999988765422 2334566
Q ss_pred HHHHHHh-------CCCChHHHHHHHHHHHhC---CCCCCHhhHHHHHHHhcCCCcc
Q 038114 120 AIIAGVA-------SPSNANEAMSLFSEMRDR---ELIPDGLTVRSLLCACTSPSNV 166 (170)
Q Consensus 120 ~li~~~~-------~~g~~~~a~~l~~~m~~~---~~~p~~~t~~~ll~~~~~~g~~ 166 (170)
.+...+. ..|+++.|...+++-... .+.++...+..+...+...|.+
T Consensus 111 ~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 167 (168)
T CHL00033 111 NMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGRF 167 (168)
T ss_pred HHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcCC
Confidence 6666666 788888777666654321 2333433344444444444443
No 94
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.65 E-value=0.00015 Score=42.42 Aligned_cols=80 Identities=13% Similarity=0.079 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHHHHhhCCC-CcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 038114 20 QNLYNEALVAFDFLQNNTNF-RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98 (170)
Q Consensus 20 ~~~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 98 (170)
.|+++.|+.+++++ ..... .|+...+-.+-.++.+.|+++.|..+++. .+.+.. +....-.+-.++.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~-~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKL-LELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHH-HHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHH-HHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHH
Confidence 34555555555555 32221 12333333345555555555555555555 211111 1222223344455555555555
Q ss_pred HHHh
Q 038114 99 VVSD 102 (170)
Q Consensus 99 ~~~~ 102 (170)
++|+
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
No 95
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.62 E-value=0.0021 Score=48.18 Aligned_cols=91 Identities=7% Similarity=-0.083 Sum_probs=68.6
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS 93 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 93 (170)
-..+...|++++|+..|++. ..... -+...|..+-.++...|++++|...++...+.. +.+...|..+-.+|.+.|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~A-l~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQA-IDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHH-HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 44566778888888888888 54332 345567777777888888888888888887753 3356778888888888888
Q ss_pred HHHHHHHHhhcccC
Q 038114 94 LEDARVVSDEMPQR 107 (170)
Q Consensus 94 ~~~a~~~~~~m~~~ 107 (170)
+++|...|+...+.
T Consensus 86 ~~eA~~~~~~al~l 99 (356)
T PLN03088 86 YQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888887764
No 96
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.57 E-value=0.0031 Score=49.84 Aligned_cols=124 Identities=12% Similarity=0.150 Sum_probs=78.5
Q ss_pred HhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCC-HHHHHHHHHH
Q 038114 10 RFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD-VVLQNYILNM 87 (170)
Q Consensus 10 ~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~ 87 (170)
.|+ |-.++-..|+..+|...|.+. .... .......+-|-+.+...|.++.|..+|..-.+- .|+ ...+|.|-..
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnka-L~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i 397 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKA-LRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASI 397 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHH-HHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHH
Confidence 455 777777778888888888776 4432 234456677777777778888888777776653 333 5567777777
Q ss_pred HHcCCCHHHHHHHHhhcccCCCCCCCC-hhhHHHHHHHHhCCCChHHHHHHHHHH
Q 038114 88 YGKCGSLEDARVVSDEMPQRNVIESPD-LASWNAIIAGVASPSNANEAMSLFSEM 141 (170)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m 141 (170)
|-+.|++++|...|++...- +|+ ...|+.+-..|-..|+.+.|.+.+..-
T Consensus 398 ~kqqgnl~~Ai~~YkealrI----~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 398 YKQQGNLDDAIMCYKEALRI----KPTFADALSNMGNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred HHhcccHHHHHHHHHHHHhc----CchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence 77777777777777765432 222 234555555555555555555555433
No 97
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.57 E-value=0.00018 Score=42.10 Aligned_cols=81 Identities=11% Similarity=0.109 Sum_probs=59.4
Q ss_pred ccchHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHH
Q 038114 56 LRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134 (170)
Q Consensus 56 ~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 134 (170)
.|+++.|..+++.+.+... .++...+-.+-.+|.+.|++++|..+++. ...+. .+....-.+..+|...|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~---~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP---SNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH---CHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC---CCHHHHHHHHHHHHHhCCHHHH
Confidence 4789999999999988643 22555555689999999999999999998 22221 1223334557889999999999
Q ss_pred HHHHHH
Q 038114 135 MSLFSE 140 (170)
Q Consensus 135 ~~l~~~ 140 (170)
+..+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999875
No 98
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.57 E-value=0.0015 Score=41.34 Aligned_cols=25 Identities=0% Similarity=-0.174 Sum_probs=21.2
Q ss_pred hHhH-HHhhhcccCCHHHHHHHHHHH
Q 038114 9 LRFT-FYNSQPIQNLYNEALVAFDFL 33 (170)
Q Consensus 9 ~~~~-li~~~~~~~~~~~a~~~~~~m 33 (170)
.++. +|.++++.|+.+....+.+..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~ 28 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSV 28 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 3455 899999999999999999766
No 99
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.54 E-value=0.0059 Score=49.58 Aligned_cols=126 Identities=7% Similarity=-0.085 Sum_probs=99.8
Q ss_pred CCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhH
Q 038114 39 FRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118 (170)
Q Consensus 39 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~ 118 (170)
+..++..+-.|-......|..++|..+++...+.. +-+......+...+.+.+++++|+..++....... -+....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p---~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS---SSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC---CCHHHH
Confidence 44557778888888889999999999999998863 33477888899999999999999999999887644 345667
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccccC
Q 038114 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 119 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~~ 169 (170)
+.+-.++...|++++|..+|++....+ .-+..++..+-.++-..|+.+++
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A 207 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRA 207 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 777899999999999999999999832 22356666666666666666543
No 100
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.53 E-value=0.0009 Score=37.22 Aligned_cols=52 Identities=10% Similarity=0.146 Sum_probs=36.9
Q ss_pred cccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccC
Q 038114 55 SLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQR 107 (170)
Q Consensus 55 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 107 (170)
..|++++|.++|+...+.. +-+...+-.+..+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4577778888888777653 225666667778888888888888888877765
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.53 E-value=0.013 Score=43.47 Aligned_cols=149 Identities=12% Similarity=-0.043 Sum_probs=91.3
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHH---HHHHhhcccchHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHH
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYAC---LISTCSSLRSLQLGRKVHDHILSSKSQPD-VVLQNYILNMYG 89 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~ 89 (170)
...+...|++++|...+++. .... +-+...+.. ........+....+.+.+.. .....|+ ......+-..+.
T Consensus 50 a~~~~~~g~~~~A~~~~~~~-l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQL-LDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHH-HHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHH
Confidence 44556778888888888887 4432 223334432 22222234455555555544 1222333 344455566778
Q ss_pred cCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCC-CCCH--hhHHHHHHHhcCCCcc
Q 038114 90 KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL-IPDG--LTVRSLLCACTSPSNV 166 (170)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-~p~~--~t~~~ll~~~~~~g~~ 166 (170)
..|++++|.+.++...+... .+...+..+-..+...|++++|..++.+.....- .|+. ..|..+...+...|+.
T Consensus 126 ~~G~~~~A~~~~~~al~~~p---~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 126 EAGQYDRAEEAARRALELNP---DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCC---CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence 88888888888888876543 3455677777888888889999888887765432 2332 2355677777777776
Q ss_pred ccC
Q 038114 167 LYL 169 (170)
Q Consensus 167 e~~ 169 (170)
+++
T Consensus 203 ~~A 205 (355)
T cd05804 203 EAA 205 (355)
T ss_pred HHH
Confidence 653
No 102
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.49 E-value=0.0048 Score=47.10 Aligned_cols=124 Identities=16% Similarity=0.100 Sum_probs=93.4
Q ss_pred hHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHH
Q 038114 11 FTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD-VVLQNYILNMYG 89 (170)
Q Consensus 11 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~ 89 (170)
|..-..+-..|++++|+..++.+ ... .+-|+.........+.+.++..+|.+.++.+... .|+ ....-.+-.+|.
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L-~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all 385 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPL-IAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHH-HHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHH
Confidence 33444556778899999999887 432 3345556667777889999999999999999875 454 667777788999
Q ss_pred cCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHH
Q 038114 90 KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141 (170)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 141 (170)
+.|++++|.+++..-..... -|...|..|-.+|...|+..++..-..|.
T Consensus 386 ~~g~~~eai~~L~~~~~~~p---~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 386 KGGKPQEAIRILNRYLFNDP---EDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred hcCChHHHHHHHHHHhhcCC---CCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 99999999999998776544 56788999998887777666665544444
No 103
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=97.49 E-value=0.0078 Score=43.90 Aligned_cols=147 Identities=13% Similarity=0.184 Sum_probs=97.2
Q ss_pred chhHhHHHhhhcccCC-----HHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhc--c----cchHHHHHHHHHHHhcCC-
Q 038114 7 TQLRFTFYNSQPIQNL-----YNEALVAFDFLQNNTNFRIRPSTYACLISTCSS--L----RSLQLGRKVHDHILSSKS- 74 (170)
Q Consensus 7 ~~~~~~li~~~~~~~~-----~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~--~----~~~~~a~~~~~~m~~~~~- 74 (170)
....+.+...++-.+. +++.+.+++.| .+.|++-+..+|-+..-.... . .....+..+|+.|++...
T Consensus 57 ~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L-~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~f 135 (297)
T PF13170_consen 57 GNHRFILAALLDISFEDPEEAFKEVLDIYEKL-KEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPF 135 (297)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcc
Confidence 3344444333344444 45667899999 999999888887764444333 2 236788999999998754
Q ss_pred --CCCHHHHHHHHHHHHcCCC----HHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCC--hHHHHHHHHHHHhCCC
Q 038114 75 --QPDVVLQNYILNMYGKCGS----LEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN--ANEAMSLFSEMRDREL 146 (170)
Q Consensus 75 --~~~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~l~~~m~~~~~ 146 (170)
.++-..+..|+.. +..+ .+.++.+|+.+...|+...-+....+.++..+....+ ..++.++++.+.+.|+
T Consensus 136 LTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ 213 (297)
T PF13170_consen 136 LTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGV 213 (297)
T ss_pred ccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCC
Confidence 3344566666554 3333 4778889999998888422234555555555544444 3488999999999999
Q ss_pred CCCHhhHHHH
Q 038114 147 IPDGLTVRSL 156 (170)
Q Consensus 147 ~p~~~t~~~l 156 (170)
++....|..+
T Consensus 214 kik~~~yp~l 223 (297)
T PF13170_consen 214 KIKYMHYPTL 223 (297)
T ss_pred ccccccccHH
Confidence 8887776644
No 104
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.49 E-value=0.00065 Score=44.04 Aligned_cols=73 Identities=14% Similarity=0.159 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHh-----CCCCCCHhhH
Q 038114 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD-----RELIPDGLTV 153 (170)
Q Consensus 79 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~~~~p~~~t~ 153 (170)
.....++..+...|++++|.++.+....... .|...|..+|.++...|+...|.+.|+.+.. .|+.|+..|-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP---~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDP---YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST---T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4566677778889999999999998887654 6788999999999999999999999988853 4888888774
Q ss_pred H
Q 038114 154 R 154 (170)
Q Consensus 154 ~ 154 (170)
.
T Consensus 140 ~ 140 (146)
T PF03704_consen 140 A 140 (146)
T ss_dssp H
T ss_pred H
Confidence 3
No 105
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.47 E-value=0.012 Score=46.28 Aligned_cols=131 Identities=13% Similarity=0.088 Sum_probs=102.9
Q ss_pred cchhHhH---HHhhhcccCCHHHHHHHHHHHHhhCCCCcc-hhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHH
Q 038114 6 KTQLRFT---FYNSQPIQNLYNEALVAFDFLQNNTNFRIR-PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81 (170)
Q Consensus 6 ~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 81 (170)
|....|. +-..|-..|++++|++.+++. ..+. |+ +..|.+--+.+-..|++.+|.+..+..++.. .-|...-
T Consensus 190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~a-I~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiN 265 (517)
T PF12569_consen 190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKA-IEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYIN 265 (517)
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-HhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHH
Confidence 4444565 467788999999999999988 5543 54 5578888888999999999999999999876 4478899
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhH--------HHHHHHHhCCCChHHHHHHHHHHH
Q 038114 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW--------NAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 82 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~--------~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
+-..+.+.|+|++++|.+++......+. .|-...+ ...-.+|.+.|++..|+.-|....
T Consensus 266 sK~aKy~LRa~~~e~A~~~~~~Ftr~~~--~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 266 SKCAKYLLRAGRIEEAEKTASLFTREDV--DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhcCCCC--CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999999998877665 3332222 233478889999998887776654
No 106
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.00089 Score=54.75 Aligned_cols=131 Identities=13% Similarity=0.105 Sum_probs=103.5
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHcC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS-KSQPDVVLQNYILNMYGKC 91 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~ 91 (170)
+-..++..|++.+|+.+|.+. ++... -...+|--+-++|...|++..|.++|+...+. .-.-++.+.+.|-+++.++
T Consensus 652 IgiVLA~kg~~~~A~dIFsqV-rEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~ 729 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQV-REATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEA 729 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHH-HHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh
Confidence 777889999999999999999 65543 34567888899999999999999999987654 4566789999999999999
Q ss_pred CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHH------------------hCCCChHHHHHHHHHHHhCCCC
Q 038114 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGV------------------ASPSNANEAMSLFSEMRDRELI 147 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~------------------~~~g~~~~a~~l~~~m~~~~~~ 147 (170)
|.+.+|.+.......... .-..+-||..+-.. ...+..+.|.++|.+|...+-.
T Consensus 730 ~~~~eak~~ll~a~~~~p--~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 730 GKLQEAKEALLKARHLAP--SNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred hhHHHHHHHHHHHHHhCC--ccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999998887766655 44446777766333 2235677889999999887643
No 107
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.45 E-value=0.0087 Score=39.93 Aligned_cols=114 Identities=11% Similarity=0.042 Sum_probs=76.0
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHH
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD--VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li 122 (170)
.+..+-..+...|++++|...|++..+....++ ...+..+-..+.+.|++++|...+.+...... -+...+..+.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP---KQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---ccHHHHHHHH
Confidence 566666777788999999999998876543322 46788888889999999999999988776432 2344555566
Q ss_pred HHHhCCCC--------------hHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCc
Q 038114 123 AGVASPSN--------------ANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165 (170)
Q Consensus 123 ~~~~~~g~--------------~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 165 (170)
..+...|+ +++|.+++.+... ..|+ .|..++..+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~--~~p~--~~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR--LAPN--NYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh--hCch--hHHHHHHHHHhcCc
Confidence 66666555 3455555554443 2333 36667766666554
No 108
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.45 E-value=0.005 Score=46.97 Aligned_cols=144 Identities=10% Similarity=0.074 Sum_probs=99.3
Q ss_pred hcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHH
Q 038114 17 QPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96 (170)
Q Consensus 17 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 96 (170)
-..+|+++.|.+.|.+. ....-......||+=+. +-..|++++|+..|-.+..- +.-+..+.-.+-..|--..++.+
T Consensus 500 ~f~ngd~dka~~~ykea-l~ndasc~ealfniglt-~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aq 576 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEA-LNNDASCTEALFNIGLT-AEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQ 576 (840)
T ss_pred eeecCcHHHHHHHHHHH-HcCchHHHHHHHHhccc-HHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHH
Confidence 34689999999999999 55444444444554333 45678999999988776432 23356677777888888899999
Q ss_pred HHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHH--------------H------------------HhC
Q 038114 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE--------------M------------------RDR 144 (170)
Q Consensus 97 a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~--------------m------------------~~~ 144 (170)
|.+++...... + +-|+...+-+-..|-+.|+-.+|++++-+ + +..
T Consensus 577 aie~~~q~~sl--i-p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa 653 (840)
T KOG2003|consen 577 AIELLMQANSL--I-PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA 653 (840)
T ss_pred HHHHHHHhccc--C-CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99988665432 2 45667777777888777777777654221 1 122
Q ss_pred CCCCCHhhHHHHHHHhcC-CCcc
Q 038114 145 ELIPDGLTVRSLLCACTS-PSNV 166 (170)
Q Consensus 145 ~~~p~~~t~~~ll~~~~~-~g~~ 166 (170)
=++|+..-|..++..|.+ .|+.
T Consensus 654 liqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 654 LIQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred hcCccHHHHHHHHHHHHHhcccH
Confidence 468999999999988864 4543
No 109
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.42 E-value=0.0036 Score=40.57 Aligned_cols=122 Identities=8% Similarity=0.089 Sum_probs=83.2
Q ss_pred hhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChh--hH
Q 038114 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD--VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLA--SW 118 (170)
Q Consensus 43 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~--~~ 118 (170)
...|..++.... .++...+...++.+.+....-. ....=.+-..+...|++++|...|+....... .|+.. ..
T Consensus 12 ~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~--d~~l~~~a~ 88 (145)
T PF09976_consen 12 SALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAP--DPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CHHHHHHHH
Confidence 345666677764 7788889999999988632211 22222344678889999999999999987654 44432 33
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccccC
Q 038114 119 NAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 119 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~~ 169 (170)
-.+...+...|++++|+..++....... ....+...=..+.+.|+.+++
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A 137 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEA 137 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHH
Confidence 4456888889999999999977443333 333455666777778876653
No 110
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.42 E-value=0.0046 Score=46.35 Aligned_cols=104 Identities=9% Similarity=0.025 Sum_probs=82.8
Q ss_pred HHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCC
Q 038114 51 STCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN 130 (170)
Q Consensus 51 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~ 130 (170)
......|+++.|...|.+..+.. +-+...|..+-.+|.+.|++++|...++....... .+...|..+-.+|...|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P---~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP---SLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHHhCC
Confidence 34556789999999999998864 33578888999999999999999999999877643 356678888899999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHh
Q 038114 131 ANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160 (170)
Q Consensus 131 ~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~ 160 (170)
+++|...|++..+. .|+.......+..|
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999999988754 45555555555444
No 111
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.42 E-value=0.0077 Score=46.78 Aligned_cols=138 Identities=12% Similarity=0.114 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHH
Q 038114 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP-DVVLQNYILNMYGKCGSLEDARVVS 101 (170)
Q Consensus 23 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~ 101 (170)
.+.....++.+.......|+. +|+..|+..-+...++.|..+|.+..+.+..+ ++.+++++|..||. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 444555555552333334433 67777777777777777777777777777766 67777777776664 4566777777
Q ss_pred h-hcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCH--hhHHHHHHHhcCCCcc
Q 038114 102 D-EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDG--LTVRSLLCACTSPSNV 166 (170)
Q Consensus 102 ~-~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~--~t~~~ll~~~~~~g~~ 166 (170)
+ .|+..|- +..--...+.-+...++-..+.-+|+.....++.|+. ..|..+|+-=+.-|++
T Consensus 425 eLGLkkf~d----~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 425 ELGLKKFGD----SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHHHhcCC----ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 7 4444333 1223344555566667777777777777766544433 4566666655555554
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.40 E-value=0.0081 Score=51.39 Aligned_cols=135 Identities=12% Similarity=0.089 Sum_probs=102.8
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHcC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKC 91 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~ 91 (170)
|..-|.+.++.++|.++|++|-++-| -....|...+....+.++-+.|..++.+..+.-. .-++....-....-.+.
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 67778888888888888888844434 5666788888888888888888888887766411 22455666666667788
Q ss_pred CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhh
Q 038114 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t 152 (170)
|+.+.+..+|+....... -....|+..|..=.++|+.+.+..+|++....++.|-..-
T Consensus 1614 GDaeRGRtlfEgll~ayP---KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYP---KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred CCchhhHHHHHHHHhhCc---cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence 888888888888765432 2345799999999999999999999999999988776543
No 113
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.38 E-value=0.0051 Score=47.99 Aligned_cols=147 Identities=14% Similarity=0.012 Sum_probs=107.8
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCC--CCcc----hhhHHHHHHHhhcccchHHHHHHHHHHHhc------CCCC-CHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTN--FRIR----PSTYACLISTCSSLRSLQLGRKVHDHILSS------KSQP-DVV 79 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~ 79 (170)
+...|...+.+++|..++....+... +.++ ..+++.|-..|-..|++++|.++|++.... +..+ ...
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 67788889999999998876523222 2222 237899999999999999999999988753 1122 255
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhh----cccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC------CCCCC
Q 038114 80 LQNYILNMYGKCGSLEDARVVSDE----MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR------ELIPD 149 (170)
Q Consensus 80 ~~~~li~~~~~~~~~~~a~~~~~~----m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------~~~p~ 149 (170)
.++-|-..|.+.+..++|.++|.+ |+..|...+-...+|..|...|.+.|++++|+++.+..... +..|+
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~ 490 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPT 490 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 778888889999999999999885 34445432334577999999999999999999998876521 35566
Q ss_pred HhhHHHHHHH
Q 038114 150 GLTVRSLLCA 159 (170)
Q Consensus 150 ~~t~~~ll~~ 159 (170)
..........
T Consensus 491 ~~~~~~~~~~ 500 (508)
T KOG1840|consen 491 VEDEKLRLAD 500 (508)
T ss_pred hhHHHHhhhH
Confidence 6665555443
No 114
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.37 E-value=0.023 Score=39.62 Aligned_cols=152 Identities=5% Similarity=-0.133 Sum_probs=113.8
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcc-hhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCC-CHHHHHHH
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIR-PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP-DVVLQNYI 84 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l 84 (170)
-.+|. +-..|.+.|..+.|.+-|++. .. ..|+ -.+.|--=-.+|..|++++|...|+.....-.-+ ...+|..+
T Consensus 69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkA-ls--l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~ 145 (250)
T COG3063 69 YLAHLVRAHYYQKLGENDLADESYRKA-LS--LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENL 145 (250)
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHH-Hh--cCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhh
Confidence 44566 688889999999999999988 43 3343 3345555555678889999999999988753322 35689999
Q ss_pred HHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCC
Q 038114 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164 (170)
Q Consensus 85 i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g 164 (170)
.-+..+.|+++.|...|+.-.+... . ...+.-.+.......|+.-.|..+++.....+. ++....-..|+.--..|
T Consensus 146 G~Cal~~gq~~~A~~~l~raL~~dp--~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~g 221 (250)
T COG3063 146 GLCALKAGQFDQAEEYLKRALELDP--Q-FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLG 221 (250)
T ss_pred HHHHhhcCCchhHHHHHHHHHHhCc--C-CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhc
Confidence 9999999999999999998776544 1 123555667777888999999999988877765 77777777777666666
Q ss_pred cc
Q 038114 165 NV 166 (170)
Q Consensus 165 ~~ 166 (170)
+.
T Consensus 222 d~ 223 (250)
T COG3063 222 DR 223 (250)
T ss_pred cH
Confidence 54
No 115
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.34 E-value=0.013 Score=39.10 Aligned_cols=79 Identities=15% Similarity=-0.008 Sum_probs=61.3
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcc--hhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIR--PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 90 (170)
+...+...|++++|...|++. ......+. ...+..+-.++.+.|+++.|...+.+..+.. +-+...+..+...|..
T Consensus 41 lg~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 118 (172)
T PRK02603 41 DGMSAQADGEYAEALENYEEA-LKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIYHK 118 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 677888899999999999998 55433222 3578888888999999999999999998753 2246677777777777
Q ss_pred CCC
Q 038114 91 CGS 93 (170)
Q Consensus 91 ~~~ 93 (170)
.|+
T Consensus 119 ~g~ 121 (172)
T PRK02603 119 RGE 121 (172)
T ss_pred cCC
Confidence 666
No 116
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.31 E-value=0.015 Score=36.56 Aligned_cols=110 Identities=12% Similarity=0.021 Sum_probs=65.7
Q ss_pred HhHHHhhhcccCCHHHHHHHHHHHHhhCCCCcch--hhHHHHHHHhhcccchHHHHHHHHHHHhcCCC--CCHHHHHHHH
Q 038114 10 RFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRP--STYACLISTCSSLRSLQLGRKVHDHILSSKSQ--PDVVLQNYIL 85 (170)
Q Consensus 10 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~li 85 (170)
.|+.-.++-..|+.++|+.+|++. ...|..... ..+-.+-+++...|++++|..++++....... .+......+-
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~A-l~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRA-LAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH-HHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 455566667778888888888887 777765442 24445556667778888888888877664211 1112222223
Q ss_pred HHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHh
Q 038114 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVA 126 (170)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~ 126 (170)
-++...|+.++|.+.+-....... ..|.--|..|+
T Consensus 83 l~L~~~gr~~eAl~~~l~~la~~~------~~y~ra~~~ya 117 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALAETL------PRYRRAIRFYA 117 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 355667888888877765543333 34554444443
No 117
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.25 E-value=0.0086 Score=39.76 Aligned_cols=89 Identities=15% Similarity=-0.078 Sum_probs=66.0
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCc--chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRI--RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYG- 89 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~- 89 (170)
+...+...|++++|...|+.. ......| ...++..+-..+...|++++|...+....+.. +.....+..+...+.
T Consensus 41 ~g~~~~~~g~~~~A~~~~~~a-l~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~~~ 118 (168)
T CHL00033 41 DGMSAQSEGEYAEALQNYYEA-MRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVICHY 118 (168)
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 677778889999999999998 5443222 23477888888999999999999999988652 233556777777777
Q ss_pred ------cCCCHHHHHHHHhh
Q 038114 90 ------KCGSLEDARVVSDE 103 (170)
Q Consensus 90 ------~~~~~~~a~~~~~~ 103 (170)
+.|+++.|...+.+
T Consensus 119 ~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 119 RGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred hhHHHHHcccHHHHHHHHHH
Confidence 77887766655553
No 118
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0093 Score=45.52 Aligned_cols=149 Identities=10% Similarity=-0.029 Sum_probs=118.3
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
+-.-|+-.++.+.|...|+.. .+.+. -....|+.+=+-|........|.+-++..++-. +.|-..|=.|-.+|.-.+
T Consensus 336 IaNYYSlr~eHEKAv~YFkRA-LkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRA-LKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHH-HhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhc
Confidence 345566667788899999888 54432 123367778888999999999999999888764 557888999999999999
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCcccc
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~ 168 (170)
.+.-|+-.|++...... -|...|.+|-..|.+.++.++|+..|..-...|-. +...+..|-+.|-+.++.++
T Consensus 413 Mh~YaLyYfqkA~~~kP---nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 413 MHFYALYYFQKALELKP---NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred chHHHHHHHHHHHhcCC---CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHH
Confidence 99999999998776543 57899999999999999999999999988877733 66778888888776665544
No 119
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.18 E-value=0.037 Score=43.54 Aligned_cols=134 Identities=13% Similarity=0.044 Sum_probs=98.2
Q ss_pred HhH-HHhhhcccCCHHHHHHHHHHHHhh---CC----------CCcchhhH--HHHHHHhhcccchHHHHHHHHHHHhcC
Q 038114 10 RFT-FYNSQPIQNLYNEALVAFDFLQNN---TN----------FRIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSK 73 (170)
Q Consensus 10 ~~~-li~~~~~~~~~~~a~~~~~~m~~~---~~----------~~p~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~ 73 (170)
.|+ |-.-|....+..-..+++...... .+ -.|+...| .-+-..|-..|+++.|.+..+...++
T Consensus 145 lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h- 223 (517)
T PF12569_consen 145 LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH- 223 (517)
T ss_pred HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-
Confidence 455 555555555555555666554121 11 12333333 44455577889999999999988886
Q ss_pred CCCC-HHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCC
Q 038114 74 SQPD-VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP 148 (170)
Q Consensus 74 ~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p 148 (170)
.|+ +..|..--+.|-+.|++++|.+..+..+..+. -|...-+-....+.|.|+.++|..++....+.+..|
T Consensus 224 -tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~---~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 224 -TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL---ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh---hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 555 77888888899999999999999998887766 677777788899999999999999999888777543
No 120
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.18 E-value=0.0096 Score=43.90 Aligned_cols=84 Identities=8% Similarity=0.098 Sum_probs=60.8
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHH
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~ 124 (170)
+.+.-|.-+...|....|.++-.+.. .|+..-|-.-|++++..++|++-++.... + -++..|-.++..
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-------KsPIGyepFv~~ 246 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-K-------KSPIGYEPFVEA 246 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-------CCCCChHHHHHH
Confidence 45555666667777777777766664 67888888888888888888887765433 1 123678888888
Q ss_pred HhCCCChHHHHHHHHH
Q 038114 125 VASPSNANEAMSLFSE 140 (170)
Q Consensus 125 ~~~~g~~~~a~~l~~~ 140 (170)
|...|+..+|..+...
T Consensus 247 ~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPK 262 (319)
T ss_pred HHHCCCHHHHHHHHHh
Confidence 8888888888877765
No 121
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.11 E-value=0.0016 Score=36.17 Aligned_cols=63 Identities=16% Similarity=0.126 Sum_probs=48.7
Q ss_pred cccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038114 18 PIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84 (170)
Q Consensus 18 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 84 (170)
.+.|++++|+.+|+++ ..... -+......+..++.+.|++++|..+++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~-l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKA-LQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHH-HHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHH-HHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 4679999999999998 54432 36777888999999999999999999999886 4453444444
No 122
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.09 E-value=0.0016 Score=53.36 Aligned_cols=155 Identities=10% Similarity=0.068 Sum_probs=103.1
Q ss_pred hHhHH-HhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhc------------ccchHHHHHHHHHHHhcCCC
Q 038114 9 LRFTF-YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSS------------LRSLQLGRKVHDHILSSKSQ 75 (170)
Q Consensus 9 ~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~------------~~~~~~a~~~~~~m~~~~~~ 75 (170)
..|++ -.-+.....|..|..-|+.+-.+....+|+++.-+|=+.|.. .+..+.|+++|.+..+.. +
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-p 643 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-P 643 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-c
Confidence 34553 335555566666666555542222333566555555444431 234678888888887764 4
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC-CCCCCHhhHH
Q 038114 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR-ELIPDGLTVR 154 (170)
Q Consensus 76 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~p~~~t~~ 154 (170)
-|...-|-+--.++.+|++..|.+||..+++... -...+|-.+...|...|++..|+++|+...+. .-.-+.....
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~---~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREATS---DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHHHh---hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 4667777777788888999999999998886644 23356778888888899999999999876554 4455667778
Q ss_pred HHHHHhcCCCccc
Q 038114 155 SLLCACTSPSNVL 167 (170)
Q Consensus 155 ~ll~~~~~~g~~e 167 (170)
.|-+++.+.|.+.
T Consensus 721 ~Lara~y~~~~~~ 733 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQ 733 (1018)
T ss_pred HHHHHHHHhhhHH
Confidence 8888887777654
No 123
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.06 E-value=0.016 Score=47.43 Aligned_cols=149 Identities=9% Similarity=0.030 Sum_probs=94.3
Q ss_pred hhhcccCCHHHHHHHHHHHHhhCCCCc--chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 15 NSQPIQNLYNEALVAFDFLQNNTNFRI--RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 15 ~~~~~~~~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
-++......+....+.... ...++.| +...|.-+-.++.+.|++.+|..+|..+.....--+..+|--+-.+|-..+
T Consensus 385 icL~~L~~~e~~e~ll~~l-~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFL-VEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhcccccchHHHHHHHH-HHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 3444444444444444444 4444333 455778888888888888888888888877644445778888888888888
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHH--------hCCCCCCHhhHHHHHHHhcCCC
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR--------DRELIPDGLTVRSLLCACTSPS 164 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~--------~~~~~p~~~t~~~ll~~~~~~g 164 (170)
..++|.+.|+....... -+...=.+|-..+-+.|+.++|.+.+..|. ..++.|+...--.....+.+.|
T Consensus 464 e~e~A~e~y~kvl~~~p---~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAP---DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred hHHHHHHHHHHHHhcCC---CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 88888888887765432 122233344456677788888888888753 2234555555555555555555
Q ss_pred ccc
Q 038114 165 NVL 167 (170)
Q Consensus 165 ~~e 167 (170)
+.|
T Consensus 541 k~E 543 (895)
T KOG2076|consen 541 KRE 543 (895)
T ss_pred hHH
Confidence 544
No 124
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.03 E-value=0.037 Score=45.38 Aligned_cols=127 Identities=12% Similarity=0.076 Sum_probs=97.5
Q ss_pred HHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 038114 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91 (170)
Q Consensus 12 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 91 (170)
.+..+|...|++.+|+.+|..+ .....--+...|--+-++|-..|..+.|.+.|+...... +.+.-.--.|-..+-+.
T Consensus 419 d~a~al~~~~~~~~Al~~l~~i-~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~ 496 (895)
T KOG2076|consen 419 DLADALTNIGKYKEALRLLSPI-TNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQL 496 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHH-hcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhc
Confidence 3689999999999999999999 655444567889999999999999999999999998752 22344445555668889
Q ss_pred CCHHHHHHHHhhcccCC--------CCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 92 GSLEDARVVSDEMPQRN--------VIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~~--------~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
|++++|.++++.+...+ . .|+...--.....+...|+.++-...-..|.
T Consensus 497 g~~EkalEtL~~~~~~D~~~~e~~a~--~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 497 GNHEKALETLEQIINPDGRNAEACAW--EPERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred CCHHHHHHHHhcccCCCccchhhccc--cHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999865332 3 5555555566677788888887666655554
No 125
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.01 E-value=0.0042 Score=40.19 Aligned_cols=98 Identities=10% Similarity=0.035 Sum_probs=65.1
Q ss_pred hcccCCHHHHHHHHHHHHhhC--C-CCcchh------------------hHHHHHHHhhcccchHHHHHHHHHHHhcCCC
Q 038114 17 QPIQNLYNEALVAFDFLQNNT--N-FRIRPS------------------TYACLISTCSSLRSLQLGRKVHDHILSSKSQ 75 (170)
Q Consensus 17 ~~~~~~~~~a~~~~~~m~~~~--~-~~p~~~------------------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 75 (170)
..+.++.+.+...+.++ ... | +-|+.. ....++..+...|+++.+..+........ +
T Consensus 16 ~~~~~~~~~~~~~~~~a-l~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P 93 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEA-LALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD-P 93 (146)
T ss_dssp HHHTT-HHHHHHHHHHH-HTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-T
T ss_pred HHHCCCHHHHHHHHHHH-HHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-C
Confidence 35567788888877776 321 1 222211 23344556667899999999999998874 5
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHhhcc-----cCCCCCCCChhhH
Q 038114 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMP-----QRNVIESPDLASW 118 (170)
Q Consensus 76 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~~~~~~p~~~~~ 118 (170)
.+-..|-.+|.+|.+.|+...|.+.|+.+. +.|+ .|+..+-
T Consensus 94 ~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~--~Ps~~~~ 139 (146)
T PF03704_consen 94 YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGI--EPSPETR 139 (146)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS------HHHH
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCc--CcCHHHH
Confidence 578899999999999999999999999763 4588 8887653
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.027 Score=40.13 Aligned_cols=124 Identities=12% Similarity=0.067 Sum_probs=89.4
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHH----hhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLIST----CSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYG 89 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~----~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 89 (170)
+..+.+..+++.|.+.+++| .+. -+..|.+-|-.+ ....+...+|.-+|++|-+. ..|++.+.|-...++.
T Consensus 144 VqI~lk~~r~d~A~~~lk~m-q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l 218 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKM-QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHL 218 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHH-Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHH
Confidence 56667788899999999999 442 233466645444 45567799999999999764 5889999999999999
Q ss_pred cCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 038114 90 KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
..|++++|+.++++...+.. +--...-|.+..+.-.-.+.+-..+.+.+++..
T Consensus 219 ~~~~~eeAe~lL~eaL~kd~--~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 219 QLGRYEEAESLLEEALDKDA--KDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HhcCHHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 99999999999999887655 222223344445544444556666777777654
No 127
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.00 E-value=0.017 Score=41.55 Aligned_cols=102 Identities=12% Similarity=0.102 Sum_probs=78.1
Q ss_pred CcchhhHHHHHHHhhc-----ccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC----------------CHHHHH
Q 038114 40 RIRPSTYACLISTCSS-----LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG----------------SLEDAR 98 (170)
Q Consensus 40 ~p~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----------------~~~~a~ 98 (170)
.-|-.+|-+.+..+.. .++++-....++.|.+.|+..|..+|+.||..+=+.. +-+-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3455567766666643 4678888888999999999999999999998876542 224577
Q ss_pred HHHhhcccCCCCCCCChhhHHHHHHHHhCCCC-hHHHHHHHHHHHh
Q 038114 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSN-ANEAMSLFSEMRD 143 (170)
Q Consensus 99 ~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~l~~~m~~ 143 (170)
+++++|...|+ .||-.+-..++.++.+.+. ..+..++.-+|-+
T Consensus 144 ~vLeqME~hGV--mPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 144 KVLEQMEWHGV--MPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHHcCC--CCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 88999999999 8999999999999988885 5566666666643
No 128
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.02 Score=47.95 Aligned_cols=130 Identities=15% Similarity=0.152 Sum_probs=92.8
Q ss_pred hhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCH
Q 038114 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSL 94 (170)
Q Consensus 15 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 94 (170)
.-+..++-+++|..+|+.. ..+......||.- .+.++.|.++-+..- .+.+|+.+-++-.+.|.+
T Consensus 1056 ~iai~~~LyEEAF~ifkkf------~~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKF------DMNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHh------cccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 3445667777777777776 3455555555553 345555555544432 467899999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccccC
Q 038114 95 EDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 95 ~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~~ 169 (170)
.+|.+-|-+ .-|+..|..++....+.|.|++....+.--++..-.|...+ .||-+|++.+++.++
T Consensus 1121 ~dAieSyik--------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~el 1185 (1666)
T KOG0985|consen 1121 KDAIESYIK--------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTEL 1185 (1666)
T ss_pred HHHHHHHHh--------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHH
Confidence 999888765 33457899999999999999999998876666666676654 677888887776554
No 129
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.94 E-value=0.0058 Score=44.23 Aligned_cols=118 Identities=12% Similarity=0.110 Sum_probs=82.8
Q ss_pred hhHHHHHHHhhcccchHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHH
Q 038114 44 STYACLISTCSSLRSLQLGRKVHDHILSSK-SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122 (170)
Q Consensus 44 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li 122 (170)
.+|..+++..-+.+..+.|..+|.+.++.+ ...++....++|.. ...++.+.|.++|+...+. + ..+...|..-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~-f--~~~~~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK-F--PSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH-H--TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH-C--CCCHHHHHHHH
Confidence 478889999999999999999999998754 34445555554433 3346788899999987643 3 45667888999
Q ss_pred HHHhCCCChHHHHHHHHHHHhCCCCCCH---hhHHHHHHHhcCCCcc
Q 038114 123 AGVASPSNANEAMSLFSEMRDRELIPDG---LTVRSLLCACTSPSNV 166 (170)
Q Consensus 123 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~---~t~~~ll~~~~~~g~~ 166 (170)
.-+...|+.+.|..+|+..... +.++. ..|...++-=.+.|++
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl 123 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDL 123 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-H
T ss_pred HHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999988765 33222 3566666554444543
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.91 E-value=0.023 Score=43.58 Aligned_cols=118 Identities=9% Similarity=0.014 Sum_probs=93.0
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCC-hhhHHHHHH
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPD-LASWNAIIA 123 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~~~~~li~ 123 (170)
-|..-+..| ..|.++.|+..+..+...- +-|+.-+......+.+.++.++|.+-++.+... .|+ ....-.+-.
T Consensus 309 ~YG~A~~~~-~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----~P~~~~l~~~~a~ 382 (484)
T COG4783 309 QYGRALQTY-LAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL----DPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHH-HhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCccHHHHHHHH
Confidence 344444433 4578999999999988762 446888888889999999999999999999876 344 445556678
Q ss_pred HHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccccC
Q 038114 124 GVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 124 ~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~~ 169 (170)
++...|.+.+|+.+++.-.... +-|...|..|-++|...|+..++
T Consensus 383 all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHH
Confidence 8999999999999999877653 56888999999999999987653
No 131
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.019 Score=44.23 Aligned_cols=123 Identities=11% Similarity=0.119 Sum_probs=84.0
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcC-----C--CCCHHHHHHHHH
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK-----S--QPDVVLQNYILN 86 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~--~~~~~~~~~li~ 86 (170)
-.+.-+.++++++...|+.. +.+ ++-.+..|+..-..+...++++.|.+.|+...+-. + .+.+.+.-.++-
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~-kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~ 512 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEA-KKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh
Confidence 34445667888888888887 433 44556678878888888888888888888776531 1 222333333333
Q ss_pred HHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
.- -.+++..|..++++..+.+. -....|-.|-..-.+.|+.++|+++|++-.
T Consensus 513 ~q-wk~d~~~a~~Ll~KA~e~Dp---kce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 513 LQ-WKEDINQAENLLRKAIELDP---KCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hc-hhhhHHHHHHHHHHHHccCc---hHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22 33778888888887776544 234678888888899999999999998653
No 132
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.81 E-value=0.01 Score=42.70 Aligned_cols=85 Identities=12% Similarity=0.158 Sum_probs=67.9
Q ss_pred ccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhccc----------------chHHHHHHHHHHHhcCCCCCHHHHH
Q 038114 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLR----------------SLQLGRKVHDHILSSKSQPDVVLQN 82 (170)
Q Consensus 19 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~----------------~~~~a~~~~~~m~~~~~~~~~~~~~ 82 (170)
+.++.+=....++.| ++-|+.-|..+|+.||+.+-+.. .-+-+..++++|..+|+.||..+-.
T Consensus 84 ~R~HveFIy~ALk~m-~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~ 162 (406)
T KOG3941|consen 84 GRTHVEFIYTALKYM-KEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIED 162 (406)
T ss_pred ccchHHHHHHHHHHH-HHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHH
Confidence 346677777888999 99999999999999999986642 2356778999999999999999999
Q ss_pred HHHHHHHcCCC-HHHHHHHHhhc
Q 038114 83 YILNMYGKCGS-LEDARVVSDEM 104 (170)
Q Consensus 83 ~li~~~~~~~~-~~~a~~~~~~m 104 (170)
.|+.++++.+- ..+..++.--|
T Consensus 163 ~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 163 ILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHhccccccHHHHHHHHHhh
Confidence 99999999875 33344443333
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.79 E-value=0.08 Score=41.44 Aligned_cols=152 Identities=10% Similarity=0.039 Sum_probs=113.4
Q ss_pred cchhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCc-chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHH
Q 038114 6 KTQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRI-RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83 (170)
Q Consensus 6 ~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 83 (170)
....+|. .|+.--+..-+..|+.+|.+. ++.+..+ +..+.+++|.-+|. ++..-|.++|+-=.+. +.-++.--..
T Consensus 364 ~~tLv~~~~mn~irR~eGlkaaR~iF~ka-R~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~ 440 (656)
T KOG1914|consen 364 DLTLVYCQYMNFIRRAEGLKAARKIFKKA-REDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLK 440 (656)
T ss_pred CCceehhHHHHHHHHhhhHHHHHHHHHHH-hhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHH
Confidence 3445566 788888999999999999999 7666666 78889999998875 5788899999854332 2334556677
Q ss_pred HHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC-C--CCCCHhhHHHHHHHh
Q 038114 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR-E--LIPDGLTVRSLLCAC 160 (170)
Q Consensus 84 li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~--~~p~~~t~~~ll~~~ 160 (170)
.++.+..-++-..|..+|+.....++.+.-....|..+|.-=+..|+...+..+=+++... . ..|...+-..+++-|
T Consensus 441 YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY 520 (656)
T KOG1914|consen 441 YLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRY 520 (656)
T ss_pred HHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHH
Confidence 8888899999999999999998876611234578999999999999999999888777543 1 343444444444444
No 134
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.78 E-value=0.057 Score=33.91 Aligned_cols=108 Identities=10% Similarity=-0.021 Sum_probs=74.3
Q ss_pred HHhhcccchHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCC
Q 038114 51 STCSSLRSLQLGRKVHDHILSSKSQPD--VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128 (170)
Q Consensus 51 ~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~ 128 (170)
.++-..|+.++|..+|++....|.... ...+-.+-..+...|++++|..+|++..........+......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 345567999999999999999887655 335555667788899999999999987754220001112222233566788
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcC
Q 038114 129 SNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162 (170)
Q Consensus 129 g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~ 162 (170)
|+.++|++.+-.... ++...|.--|..|..
T Consensus 89 gr~~eAl~~~l~~la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 89 GRPKEALEWLLEALA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred CCHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 999999998876553 344477777777653
No 135
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.78 E-value=0.039 Score=36.23 Aligned_cols=87 Identities=6% Similarity=-0.112 Sum_probs=51.1
Q ss_pred hhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChH
Q 038114 53 CSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNAN 132 (170)
Q Consensus 53 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~ 132 (170)
+...|++++|.++|.-+.... +-+..-|-.|--++-..|++++|...|......+. -|...+-.+-.++...|+.+
T Consensus 45 ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~---ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI---DAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCCHH
Confidence 345566777777776665543 22344555555555566677777777766555444 34455555556666667777
Q ss_pred HHHHHHHHHHh
Q 038114 133 EAMSLFSEMRD 143 (170)
Q Consensus 133 ~a~~l~~~m~~ 143 (170)
.|...|+.-..
T Consensus 121 ~A~~aF~~Ai~ 131 (157)
T PRK15363 121 YAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHH
Confidence 77766665443
No 136
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.77 E-value=0.02 Score=46.50 Aligned_cols=105 Identities=13% Similarity=0.044 Sum_probs=61.6
Q ss_pred HHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCC
Q 038114 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128 (170)
Q Consensus 49 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~ 128 (170)
.|.+.....++.+|..+++.++..+.. ..-|..+-+.|...|+++.|+++|.+-. .++-.|..|.+.
T Consensus 738 aieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-----------~~~dai~my~k~ 804 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-----------LFKDAIDMYGKA 804 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc-----------hhHHHHHHHhcc
Confidence 344555666777777777777665322 3345666677777777777777776532 355567777777
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCcccc
Q 038114 129 SNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 129 g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~ 168 (170)
|.|+.|.++-.+.. |-......|.+=..-.-..|++.+
T Consensus 805 ~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~e 842 (1636)
T KOG3616|consen 805 GKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAE 842 (1636)
T ss_pred ccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhh
Confidence 77777777765543 333333344443333344444433
No 137
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.76 E-value=0.0085 Score=32.91 Aligned_cols=53 Identities=6% Similarity=-0.018 Sum_probs=29.5
Q ss_pred HhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 038114 52 TCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105 (170)
Q Consensus 52 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 105 (170)
.+...|++++|...|++..+.. +-+...+..+-.++.+.|++++|...|++..
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445566666666666665553 2245555555566666666666666665554
No 138
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.73 E-value=0.0089 Score=32.84 Aligned_cols=55 Identities=16% Similarity=0.109 Sum_probs=28.0
Q ss_pred hhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHh
Q 038114 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILS 71 (170)
Q Consensus 15 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 71 (170)
..+.+.|++++|...|++. .... +-+...+..+-.++...|++++|...|+...+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~-l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQA-LKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHH-HCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH-HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555555 3333 12444555555555555555555555555543
No 139
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.1 Score=38.10 Aligned_cols=150 Identities=14% Similarity=0.067 Sum_probs=95.7
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCC-------------CCH-
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQ-------------PDV- 78 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-------------~~~- 78 (170)
.-.-.-+.|+++.|.+-|...-+-.|+.|-. .|+..+..| +.++...|++...++.+.|+. ||+
T Consensus 150 ~gCllykegqyEaAvqkFqaAlqvsGyqpll-AYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr 227 (459)
T KOG4340|consen 150 LGCLLYKEGQYEAAVQKFQAALQVSGYQPLL-AYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR 227 (459)
T ss_pred chheeeccccHHHHHHHHHHHHhhcCCCchh-HHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh
Confidence 3344568899999999999885667887754 787776555 557899999999999988752 221
Q ss_pred -------HHHHHHHHH-------HHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 038114 79 -------VLQNYILNM-------YGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 79 -------~~~~~li~~-------~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
..-+.++.+ +.+.++++.|.+-+..|.-+.-. ..|++|...+.-.=.. +++-...+=+.=+...
T Consensus 228 svgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~-elDPvTLHN~Al~n~~-~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 228 SVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEE-ELDPVTLHNQALMNMD-ARPTEGFEKLQFLLQQ 305 (459)
T ss_pred cccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccc-cCCchhhhHHHHhccc-CCccccHHHHHHHHhc
Confidence 122334433 45789999999999999844332 6677776655433222 2232322222222222
Q ss_pred CCCCCHhhHHHHHHHhcCCCccc
Q 038114 145 ELIPDGLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 145 ~~~p~~~t~~~ll~~~~~~g~~e 167 (170)
+ .-...||..++-.||+..-++
T Consensus 306 n-PfP~ETFANlLllyCKNeyf~ 327 (459)
T KOG4340|consen 306 N-PFPPETFANLLLLYCKNEYFD 327 (459)
T ss_pred C-CCChHHHHHHHHHHhhhHHHh
Confidence 2 235678888888888766544
No 140
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.67 E-value=0.083 Score=39.05 Aligned_cols=106 Identities=8% Similarity=-0.128 Sum_probs=84.2
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
.|.-|...|+...|.++-.+. -.|+..-|-.-|.+++..++|++..++-.. .-++.-|--++.++.+.|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~F-----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEF-----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHc-----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCC
Confidence 578888889988888776666 348999999999999999999977765432 123578899999999999
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHH
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 141 (170)
+..+|...... + ++..-+..|.+.|++.+|.+.-.+.
T Consensus 252 ~~~eA~~yI~k-----~-------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 252 NKKEASKYIPK-----I-------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CHHHHHHHHHh-----C-------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999998887 2 3366788889999999987765443
No 141
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=96.66 E-value=0.096 Score=34.85 Aligned_cols=101 Identities=19% Similarity=0.151 Sum_probs=71.5
Q ss_pred HHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 038114 27 LVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106 (170)
Q Consensus 27 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 106 (170)
.+.+..+ ...+++|....+..+|..+.+.|.+. .+.++.+.++.+|.......+-.+.... ..+.++--+|..
T Consensus 14 lEYirSl-~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~~~--~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSL-NQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGNQY--PPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHccC--hHHHHHHHHHHH
Confidence 3455556 67889999999999999999999866 5667778888888877777765555432 333333333332
Q ss_pred -CCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHH
Q 038114 107 -RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141 (170)
Q Consensus 107 -~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 141 (170)
.+ ..+..+++.+...|++-+|.++.+..
T Consensus 87 RL~-------~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 87 RLG-------TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred Hhh-------hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 22 26777888888889999999888764
No 142
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.076 Score=44.71 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=86.2
Q ss_pred ccchhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHH
Q 038114 5 LKTQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83 (170)
Q Consensus 5 ~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 83 (170)
+.....|. +-.+-.+.|...+|++-|-+. -|+..|.-++..+.+.|.+++-.+.+...++....|. +=+.
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~e 1171 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSE 1171 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHH
Confidence 34566788 889999999999999888777 6788999999999999999999988887777765654 4578
Q ss_pred HHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHH
Q 038114 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139 (170)
Q Consensus 84 li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~ 139 (170)
||-+|++.+++.+.++... -|+....-.+-.-|...|.++.|.-++.
T Consensus 1172 Li~AyAkt~rl~elE~fi~---------gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1172 LIFAYAKTNRLTELEEFIA---------GPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HHHHHHHhchHHHHHHHhc---------CCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 9999999999988776543 2333444444444444444444444443
No 143
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.63 E-value=0.12 Score=44.85 Aligned_cols=131 Identities=11% Similarity=0.099 Sum_probs=96.6
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchh---hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHH
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPS---TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 83 (170)
..-|- .|....+.+..+.|++++++.-..-+++-... .|.++++.-...|.-+...++|++..+.. . .-.+|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHHHHH
Confidence 33444 58888999999999999988734444444333 56677777677777888888998887753 2 2568888
Q ss_pred HHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHh
Q 038114 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 84 li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 143 (170)
|...|.+.+..++|-++++.|.+.= +-....|...+..+.+..+-+.|.+++.+-.+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF---~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKF---GQTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHh---cchhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 9999999999999999999886431 12336788888888888888888888776543
No 144
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.14 Score=36.42 Aligned_cols=120 Identities=13% Similarity=0.088 Sum_probs=76.3
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchh----hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPS----TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYG 89 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 89 (170)
+.+....|+.+.|...++++ ...- |.+. ....+ +-..|.+++|.++++.+.+.. +.|.+++--=+-..-
T Consensus 59 ~IAAld~~~~~lAq~C~~~L-~~~f--p~S~RV~~lkam~---lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 59 FIAALDTGRDDLAQKCINQL-RDRF--PGSKRVGKLKAML---LEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHhcchHHHHHHHHHH-HHhC--CCChhHHHHHHHH---HHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 55666677788888888887 4433 3332 12222 234567788888888887765 445666665555555
Q ss_pred cCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHh
Q 038114 90 KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 143 (170)
..|.-.+|.+-+.+-.+. + ..|...|.-+-..|...|++++|.-+++++.-
T Consensus 132 a~GK~l~aIk~ln~YL~~-F--~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDK-F--MNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HcCCcHHHHHHHHHHHHH-h--cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 555555555555444332 2 46777888888888888888888888888863
No 145
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.078 Score=38.30 Aligned_cols=99 Identities=8% Similarity=-0.027 Sum_probs=48.2
Q ss_pred chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHhhcccCCCCCCCChhhH
Q 038114 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC---GSLEDARVVSDEMPQRNVIESPDLASW 118 (170)
Q Consensus 42 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~~~p~~~~~ 118 (170)
|...|-.|=.+|...|+++.|...|..-.+-- .+++..+..+-.++... ..-.++..+|+++...+. -|+.+-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~---~~iral 230 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP---ANIRAL 230 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC---ccHHHH
Confidence 44455555566666666666666555554421 22233333333332221 234555555555554422 233444
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHhC
Q 038114 119 NAIIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 119 ~~li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
..+-..+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44445555556666666666555543
No 146
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.12 Score=37.01 Aligned_cols=140 Identities=9% Similarity=0.044 Sum_probs=96.8
Q ss_pred hHhHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHH---
Q 038114 9 LRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL--- 85 (170)
Q Consensus 9 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li--- 85 (170)
+.|.++..+.-.|.+.-...++++. .+...+.++.....|.+.-...|+.+.|...|+...+..-..|-.+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~v-i~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSV-IKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHH-HHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4445677777778888888889888 777667788888888888888999999999999887653344444444443
Q ss_pred --HHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHH
Q 038114 86 --NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVR 154 (170)
Q Consensus 86 --~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~ 154 (170)
..|.-..++..|...|.+....+- -++..-|.=.-...-.|+...|...++.|... -|...+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~---~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDP---RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCC---CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 345556788888888887775543 23333343333344457889999999988754 34444444
No 147
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.56 E-value=0.09 Score=37.76 Aligned_cols=100 Identities=6% Similarity=0.041 Sum_probs=70.7
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHH
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQP--DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li 122 (170)
.|...+....+.|++++|...|+.+.+..... .+..+--+-..|...|++++|...|+.+...-.........+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 56666666566789999999999998753211 1346667778889999999999999998753221022233343445
Q ss_pred HHHhCCCChHHHHHHHHHHHhC
Q 038114 123 AGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 123 ~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
..+...|+.++|...|++..+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5666889999999999988754
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.56 E-value=0.0097 Score=33.07 Aligned_cols=59 Identities=10% Similarity=0.001 Sum_probs=29.0
Q ss_pred hhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHhh
Q 038114 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG-SLEDARVVSDE 103 (170)
Q Consensus 44 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~ 103 (170)
.+|..+=..+...|++++|...|.+..+.. +-+...|..+-.+|.+.| ++++|.+.|+.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 344444444555555555555555555442 223445555555555555 45555555543
No 149
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.52 E-value=0.02 Score=45.92 Aligned_cols=56 Identities=7% Similarity=-0.106 Sum_probs=36.5
Q ss_pred HhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHH
Q 038114 10 RFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDH 68 (170)
Q Consensus 10 ~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 68 (170)
.|. .+..|...|+.+.|..+..+- .+ -.|++..|+.+........-++.|.++++.
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~-le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~ 482 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQE-LE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNY 482 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHH-hc--CCCcchhHHHhhhhccChHHHHHHHHHhhh
Confidence 455 677777888777777777665 33 457777777776665555555555555543
No 150
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.51 E-value=0.087 Score=41.31 Aligned_cols=146 Identities=12% Similarity=-0.010 Sum_probs=105.7
Q ss_pred cccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 038114 18 PIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97 (170)
Q Consensus 18 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 97 (170)
.......+..++|-++....+..+|+.+.+.|=-.|--.|+++.|...|+....-. +-|-.+||-|--.++...+.++|
T Consensus 405 ~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EA 483 (579)
T KOG1125|consen 405 LDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEA 483 (579)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHH
Confidence 34444567777887775777777889999888888889999999999999998764 44688999999999999999999
Q ss_pred HHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHH---HhCC------CCCCHhhHHHHHHHhcCCCccc
Q 038114 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM---RDRE------LIPDGLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 98 ~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m---~~~~------~~p~~~t~~~ll~~~~~~g~~e 167 (170)
...|.+..+... .. ++..-.|--+|...|.+++|...|-+- ...+ -.++...|..|=.+++-.++.|
T Consensus 484 IsAY~rALqLqP--~y-VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 484 ISAYNRALQLQP--GY-VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHHHHHhcCC--Ce-eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 999998876532 11 244444555678889999998876644 3331 1233456666655555554444
No 151
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.49 E-value=0.11 Score=33.34 Aligned_cols=124 Identities=15% Similarity=0.064 Sum_probs=87.4
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
++..+.+.+.+.....+++.+ ...+ ..++..++.++..|++.+. +.....+.. ..+......+++.|.+.+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~-~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESA-LKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHH-HccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 788888889999999999998 6666 3778899999999997643 333344332 123444555888888889
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCC-CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcC
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP-SNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~ 162 (170)
.++++.-++..+... ...+..+... ++.+.|.+.+.+- -+...|..++..+..
T Consensus 84 l~~~~~~l~~k~~~~-----------~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 84 LYEEAVELYKKDGNF-----------KDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred cHHHHHHHHHhhcCH-----------HHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 999999999887532 2233333333 7888898888752 266688888877754
No 152
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.42 E-value=0.026 Score=31.30 Aligned_cols=62 Identities=11% Similarity=0.065 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCC-ChHHHHHHHHHHH
Q 038114 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPS-NANEAMSLFSEMR 142 (170)
Q Consensus 78 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~l~~~m~ 142 (170)
+.+|..+-..+.+.|++++|...|++..+.+. -+...|..+-.++...| ++++|+..|++-.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p---~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP---NNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST---THHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 44555555566666666666666665554422 23445555555556655 4666666655443
No 153
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.42 E-value=0.11 Score=42.75 Aligned_cols=138 Identities=12% Similarity=0.124 Sum_probs=93.7
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHh--hcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTC--SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 91 (170)
|-.....+++..|+.-..++-++.+-. .|..++.++ .+.|+.++|..+++....-+.. |-.|...+-.+|-..
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~Pn~----~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKHPNA----LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDL 90 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHH
Confidence 334456788888888887762443333 344444443 4778888888888887766655 788899999999999
Q ss_pred CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhc
Q 038114 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~ 161 (170)
+..++|..+|+...+. -|+..-...+..+|+|.+++.+-...--+|-+ .+.-+...+-++++...
T Consensus 91 ~~~d~~~~~Ye~~~~~----~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQK----YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLIL 155 (932)
T ss_pred hhhhHHHHHHHHHHhh----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHH
Confidence 9999999999987755 45677777788888888877665444433333 23334455555555543
No 154
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.41 E-value=0.35 Score=38.33 Aligned_cols=138 Identities=11% Similarity=-0.023 Sum_probs=87.0
Q ss_pred cchhHhH-HHhhhcc--c---CCHHHHHHHHHHHHhhCCCCcch-hhHHHHHHHhhcc--------cchHHHHHHHHHHH
Q 038114 6 KTQLRFT-FYNSQPI--Q---NLYNEALVAFDFLQNNTNFRIRP-STYACLISTCSSL--------RSLQLGRKVHDHIL 70 (170)
Q Consensus 6 ~~~~~~~-li~~~~~--~---~~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~--------~~~~~a~~~~~~m~ 70 (170)
.+...|. .+++... . +....|..+|++. .+. .|+- ..|..+-.++... .+...+.+......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~A-i~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEI-LKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3556677 4655433 2 3366889999888 432 3432 2333332222111 11233333333322
Q ss_pred hc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCC
Q 038114 71 SS-KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD 149 (170)
Q Consensus 71 ~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~ 149 (170)
.. ....++..|.++--.+...|++++|...++...+. .|+...|..+-..+...|+.++|.+.+.+-... .|.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L----~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~ 485 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL----EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPG 485 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence 22 23445678888866677789999999999998776 567788999999999999999999999876543 344
Q ss_pred Hhh
Q 038114 150 GLT 152 (170)
Q Consensus 150 ~~t 152 (170)
..|
T Consensus 486 ~pt 488 (517)
T PRK10153 486 ENT 488 (517)
T ss_pred Cch
Confidence 334
No 155
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.34 E-value=0.15 Score=33.49 Aligned_cols=93 Identities=10% Similarity=-0.010 Sum_probs=73.5
Q ss_pred hHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 038114 11 FTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90 (170)
Q Consensus 11 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 90 (170)
|.+-.-+.+.|++++|..+|+.+ ..-.. -+..-|-.|=-++-..|++++|...|.....-. +-|+..+-.+-.++.+
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L-~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLL-TIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH-HHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 44566678899999999999998 43321 234455566666778899999999999998876 3467888888899999
Q ss_pred CCCHHHHHHHHhhccc
Q 038114 91 CGSLEDARVVSDEMPQ 106 (170)
Q Consensus 91 ~~~~~~a~~~~~~m~~ 106 (170)
.|+.+.|.+.|+....
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999997654
No 156
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=96.32 E-value=0.014 Score=37.65 Aligned_cols=129 Identities=14% Similarity=0.091 Sum_probs=64.2
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
+++.|.+.+.+.....+++.+ ...+...+....+.++..|++.++.+...++++ .. +..-...+++.+-+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~-~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~~----~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEAL-VKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---TS----NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHH-HHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---SS----SSS-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHH-HhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---cc----cccCHHHHHHHHHhcc
Confidence 455566666666666666666 444444555566666666666655555444444 11 1122234455555556
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCcc
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 166 (170)
.+++|.-++..+....- -.+ .+...++++.|.+.+. -.++...|..+++.|...+..
T Consensus 85 l~~~a~~Ly~~~~~~~~--al~---------i~~~~~~~~~a~e~~~------~~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDE--ALE---------ILHKLKDYEEAIEYAK------KVDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp SHHHHHHHHHCCTTHTT--CSS---------TSSSTHCSCCCTTTGG------GCSSSHHHHHHHHHHCTSTCT
T ss_pred hHHHHHHHHHHcccHHH--HHH---------HHHHHccHHHHHHHHH------hcCcHHHHHHHHHHHHhcCcc
Confidence 66666666655442211 000 1222333333332222 124577788888877766554
No 157
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.30 E-value=0.2 Score=38.83 Aligned_cols=120 Identities=14% Similarity=0.121 Sum_probs=65.4
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS 93 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 93 (170)
+..=.++.+...|+.+|+.. ...=.+.|. .|-.-+..=-..|++..|.++|+...+ ..|+...|.+.|+.=.+-..
T Consensus 114 ae~Emknk~vNhARNv~dRA-vt~lPRVdq-lWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRyke 189 (677)
T KOG1915|consen 114 AEFEMKNKQVNHARNVWDRA-VTILPRVDQ-LWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKE 189 (677)
T ss_pred HHHHHhhhhHhHHHHHHHHH-HHhcchHHH-HHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhH
Confidence 44445566666666666665 322222222 222333333345666666666666554 36667777777777666667
Q ss_pred HHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHH
Q 038114 94 LEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141 (170)
Q Consensus 94 ~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 141 (170)
++.|..+|+...-. -|++.+|--...-=-++|+...|..+++.-
T Consensus 190 ieraR~IYerfV~~----HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 190 IERARSIYERFVLV----HPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred HHHHHHHHHHHhee----cccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 77777776654422 345555555555445555555555555443
No 158
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.062 Score=40.05 Aligned_cols=120 Identities=8% Similarity=0.009 Sum_probs=67.6
Q ss_pred ccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 038114 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDAR 98 (170)
Q Consensus 19 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 98 (170)
-..++++++-.+..+ +.--..-|...| -+-.+.+..|.+.+|+++|-.+....+.-+..-.+.|-++|.+++.++.|+
T Consensus 371 L~~qFddVl~YlnSi-~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSI-ESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHH-HHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence 334555555555555 443333333333 345566666777777777776655544433434445566777777777777
Q ss_pred HHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 038114 99 VVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 99 ~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
+++-.+...+- .-...-.+...|-+.+++--|-.-|+++...
T Consensus 449 ~~~lk~~t~~e----~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 449 DMMLKTNTPSE----RFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHhcCCchh----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 77766653322 1112223345666667776666667666544
No 159
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.26 E-value=0.16 Score=40.18 Aligned_cols=128 Identities=13% Similarity=0.029 Sum_probs=87.1
Q ss_pred CCCCcchhhHHHHHHHhhcc-----cchHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCC--------CHHHHHHHHh
Q 038114 37 TNFRIRPSTYACLISTCSSL-----RSLQLGRKVHDHILSSKSQPD-VVLQNYILNMYGKCG--------SLEDARVVSD 102 (170)
Q Consensus 37 ~~~~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~--------~~~~a~~~~~ 102 (170)
.+.+.+...|...+++.... ++.+.|..+|++..+. .|+ ...|..+..+|.... ++..+.+...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 34556778999999986432 3477899999999876 455 556665544443321 2334444444
Q ss_pred hcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccccC
Q 038114 103 EMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 103 ~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~~ 169 (170)
........ ..+...|.++-......|++++|...+++....+ |+...|..+-..+...|+.+++
T Consensus 409 ~a~al~~~-~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA 472 (517)
T PRK10153 409 NIVALPEL-NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLA 472 (517)
T ss_pred HhhhcccC-cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHH
Confidence 43332110 3455678877666667799999999999988765 7888999999999999987764
No 160
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.19 E-value=0.02 Score=32.11 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=26.7
Q ss_pred HHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
.|.+.++++.|.++++.+...+. .+...|...-..+...|++++|.+.|+...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDP---DDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCc---ccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34455555555555555554433 233444444455555555555555555554
No 161
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.069 Score=38.93 Aligned_cols=84 Identities=20% Similarity=0.147 Sum_probs=56.8
Q ss_pred cchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhccc-CCCCCCCChhhHHHHHHHHhCCCChHHHH
Q 038114 57 RSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ-RNVIESPDLASWNAIIAGVASPSNANEAM 135 (170)
Q Consensus 57 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 135 (170)
+++-.+..+.++....| +..+.+..-....+.|+++.|.+-|....+ .|. .|- ..||..+..|.+ |+...|+
T Consensus 126 ~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy--qpl-lAYniALaHy~~-~qyasAL 198 (459)
T KOG4340|consen 126 GDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY--QPL-LAYNLALAHYSS-RQYASAL 198 (459)
T ss_pred ccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCC--Cch-hHHHHHHHHHhh-hhHHHHH
Confidence 44444444444443222 233333333345578999999999997764 566 554 689999888765 8999999
Q ss_pred HHHHHHHhCCCC
Q 038114 136 SLFSEMRDRELI 147 (170)
Q Consensus 136 ~l~~~m~~~~~~ 147 (170)
.+..++...|++
T Consensus 199 k~iSEIieRG~r 210 (459)
T KOG4340|consen 199 KHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHhhhh
Confidence 999999988763
No 162
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.07 E-value=0.018 Score=32.82 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHhhcccC----CCCCCCC-hhhHHHHHHHHhCCCChHHHHHHHHHH
Q 038114 79 VLQNYILNMYGKCGSLEDARVVSDEMPQR----NVIESPD-LASWNAIIAGVASPSNANEAMSLFSEM 141 (170)
Q Consensus 79 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m 141 (170)
.+|+.+-..|...|++++|.+.|++..+. |-. .|+ ..+++.+-..+...|++++|++++++-
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD-HPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555566666666666655544311 110 122 344555556666666666666665543
No 163
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.07 E-value=0.028 Score=31.48 Aligned_cols=52 Identities=13% Similarity=-0.028 Sum_probs=25.3
Q ss_pred hhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 038114 53 CSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105 (170)
Q Consensus 53 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 105 (170)
+.+.++++.|.++++.+.+.+ +.++..|...-.++.+.|++++|.+.|+...
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 444455555555555554442 2234444444455555555555555555444
No 164
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.33 Score=34.55 Aligned_cols=123 Identities=11% Similarity=0.041 Sum_probs=85.7
Q ss_pred hcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHH
Q 038114 17 QPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96 (170)
Q Consensus 17 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 96 (170)
+-..|++++|+++++.+ .... +.|..++--=+-..-..|+..+|.+-+....+. +..|...|.-|-..|...|+++.
T Consensus 96 lEa~~~~~~A~e~y~~l-L~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~k 172 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESL-LEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEK 172 (289)
T ss_pred HHHhhchhhHHHHHHHH-hccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHH
Confidence 34569999999999999 6665 456666665444444556656777766666654 57799999999999999999999
Q ss_pred HHHHHhhcccCCCCCCCChhhHHHHHHH---HhCCCChHHHHHHHHHHHhCC
Q 038114 97 ARVVSDEMPQRNVIESPDLASWNAIIAG---VASPSNANEAMSLFSEMRDRE 145 (170)
Q Consensus 97 a~~~~~~m~~~~~~~~p~~~~~~~li~~---~~~~g~~~~a~~l~~~m~~~~ 145 (170)
|.-+++++.=... .+...|-.+-.. -+...+.+.+..++..-.+..
T Consensus 173 A~fClEE~ll~~P---~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 173 AAFCLEELLLIQP---FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHcCC---CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999999874322 222333333333 333446777888887666543
No 165
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.35 Score=35.58 Aligned_cols=127 Identities=13% Similarity=0.054 Sum_probs=86.5
Q ss_pred HHhhhcccCCHHHHHHHHHHH---------HhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhc---CCCC--CH
Q 038114 13 FYNSQPIQNLYNEALVAFDFL---------QNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS---KSQP--DV 78 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m---------~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~--~~ 78 (170)
|.++|+....|+.-....-.+ +-..|...+..+...++.......+++++...+-.++.+ ...| +.
T Consensus 25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~ 104 (418)
T KOG4570|consen 25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI 104 (418)
T ss_pred hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH
Confidence 566677666665433333122 012345566667777777777777888888877777654 2233 34
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCC
Q 038114 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145 (170)
Q Consensus 79 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 145 (170)
++|-.++.-| +++++..++..=.+-|+ =||..+++.+|..+.+.++...|.++.-+|..+.
T Consensus 105 ~~~irlllky----~pq~~i~~l~npIqYGi--F~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 105 HTWIRLLLKY----DPQKAIYTLVNPIQYGI--FPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHcc----ChHHHHHHHhCcchhcc--ccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 4444444433 67788888888888888 7999999999999999999999888877776554
No 166
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=95.97 E-value=0.3 Score=41.09 Aligned_cols=127 Identities=12% Similarity=0.074 Sum_probs=82.9
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhCC-CCcchhhHHHHHHHhhcccchHHHHHH------------------HH
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNTN-FRIRPSTYACLISTCSSLRSLQLGRKV------------------HD 67 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~------------------~~ 67 (170)
...|- |+..+...+++++|.++.+.. .... -.+...-+..+ .+...++.+++..+ ..
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~-l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEH-LKEHKKSISALYISGI--LSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH-HHhCCcceehHHHHHH--HHHhhcchhhhhhhhhhhhcccccchhHHHHHHH
Confidence 44555 799999999999999999866 3322 22222222222 33344444443333 33
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHh
Q 038114 68 HILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 68 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 143 (170)
.+.+.+ -+...+-.+-.+|-+.|+.++|.++++++.+.+. -|+...|.+...|+.. ++++|.+++.+-..
T Consensus 108 ~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~---~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 108 KILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADR---DNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 333321 1234666777788888999999999999887765 5667888888888888 88888887776653
No 167
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=95.97 E-value=0.39 Score=34.79 Aligned_cols=141 Identities=12% Similarity=0.089 Sum_probs=103.2
Q ss_pred cCCHHHHHHHHHHHHhh-CCCCcchhhHHHHHHHhhc-cc-chHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHcCCCHH
Q 038114 20 QNLYNEALVAFDFLQNN-TNFRIRPSTYACLISTCSS-LR-SLQLGRKVHDHILS-SKSQPDVVLQNYILNMYGKCGSLE 95 (170)
Q Consensus 20 ~~~~~~a~~~~~~m~~~-~~~~p~~~~~~~li~~~~~-~~-~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~~ 95 (170)
+....+|+.+|+.. .. ..+--|..+...+++.... .+ ....-.++.+.+.. .|-.++..+...+|..++..++|.
T Consensus 141 N~~Vv~aL~L~~~~-~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 141 NKIVVEALKLYDGL-NPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hHHHHHHHHHhhcc-CcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 34455677777755 32 4566788888888888766 22 34444445555543 356788889999999999999999
Q ss_pred HHHHHHhhcccC-CCCCCCChhhHHHHHHHHhCCCChHHHHHHHHH-----HHhCCCCCCHhhHHHHHHHhcCC
Q 038114 96 DARVVSDEMPQR-NVIESPDLASWNAIIAGVASPSNANEAMSLFSE-----MRDRELIPDGLTVRSLLCACTSP 163 (170)
Q Consensus 96 ~a~~~~~~m~~~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~-----m~~~~~~p~~~t~~~ll~~~~~~ 163 (170)
.-.+.++.-... +. .-|...|..+|......|+.+-...+..+ +++.|+..+...-.+|-+.+.+.
T Consensus 220 kl~~fW~~~~~~~~~--~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~v 291 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVP--GNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKKV 291 (292)
T ss_pred HHHHHHHHhcccCCC--CCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHhc
Confidence 999998876644 55 77889999999999999999888877764 34567777777777766665543
No 168
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.94 E-value=0.22 Score=35.79 Aligned_cols=97 Identities=10% Similarity=0.024 Sum_probs=70.3
Q ss_pred hhHhHH-HhhhcccCCHHHHHHHHHHHHhhCCCCcc----hhhHHHHHHHhhcccchHHHHHHHHHHHhcC--CCCCHHH
Q 038114 8 QLRFTF-YNSQPIQNLYNEALVAFDFLQNNTNFRIR----PSTYACLISTCSSLRSLQLGRKVHDHILSSK--SQPDVVL 80 (170)
Q Consensus 8 ~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~ 80 (170)
...|.. +..+.+.|++++|...|+.+ ...- |+ +..+-.+-.++...|++++|...|..+.+.- -......
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~f-l~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNF-VKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH-HHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 344553 44446679999999999998 4432 33 3467778888899999999999999998642 1112334
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcccC
Q 038114 81 QNYILNMYGKCGSLEDARVVSDEMPQR 107 (170)
Q Consensus 81 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 107 (170)
+-.+...+...|+.++|.++|+...+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444556677899999999999988765
No 169
>PLN02789 farnesyltranstransferase
Probab=95.88 E-value=0.48 Score=35.12 Aligned_cols=140 Identities=6% Similarity=-0.001 Sum_probs=93.7
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchh-hHHHHHHHhhccc-chHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPS-TYACLISTCSSLR-SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 90 (170)
+-..+...++.++|+.+++++ ... .|+.. .|+.--.++...+ .+++++..++.+.+.. +-+..+|+-.--.+.+
T Consensus 43 ~ra~l~~~e~serAL~lt~~a-I~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~ 118 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADV-IRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHH-HHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHH
Confidence 344556678899999999988 432 23222 3333333344455 5789999999998764 3345667755445555
Q ss_pred CCC--HHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHh
Q 038114 91 CGS--LEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160 (170)
Q Consensus 91 ~~~--~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~ 160 (170)
.|. .+++...++.+.+.+. -+..+|+..--.+...|+++++++.++++.+.+.. |...|+...-.+
T Consensus 119 l~~~~~~~el~~~~kal~~dp---kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl 186 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDA---KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVI 186 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHH
Confidence 555 3677888888776544 45678888888888889999999999999887644 344444443333
No 170
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.83 E-value=0.082 Score=40.64 Aligned_cols=143 Identities=13% Similarity=0.085 Sum_probs=63.3
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCC-CCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTN-FRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 91 (170)
.|..-.+..-.+.|+.+|-+. +..| +.|+..+++++|..++. |+..-|..+|+-=... ++.++.--+-.+..+.+-
T Consensus 403 ~~N~v~r~~Gl~aaR~~F~k~-rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fLi~i 479 (660)
T COG5107 403 HLNYVLRKRGLEAARKLFIKL-RKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLLFLIRI 479 (660)
T ss_pred HHHHHHHHhhHHHHHHHHHHH-hccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHHHHHHh
Confidence 344444555555555555555 4444 34455555555554443 3344444444422211 111222223344444555
Q ss_pred CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhc
Q 038114 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~ 161 (170)
++-+.|..+|+.-..+--. .---..|-.+|.-=+..|+...+..+=+.|.. +.|-..+...+.+-|.
T Consensus 480 nde~naraLFetsv~r~~~-~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 480 NDEENARALFETSVERLEK-TQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred CcHHHHHHHHHHhHHHHHH-hhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 5555555555522211000 00013555555555555555555555554442 2444444444444443
No 171
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.79 E-value=0.52 Score=37.98 Aligned_cols=142 Identities=11% Similarity=0.044 Sum_probs=92.0
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS 93 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 93 (170)
+.-....|++...+..|+..-....+.....+|...|......+-++-+.++++...+. ++..-+.-|..+++.++
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccc
Confidence 44455667777777777765244455555567777777777777777777777777643 44456677777777777
Q ss_pred HHHHHHHHhhcccCCCC----------------------------------------CCCC--hhhHHHHHHHHhCCCCh
Q 038114 94 LEDARVVSDEMPQRNVI----------------------------------------ESPD--LASWNAIIAGVASPSNA 131 (170)
Q Consensus 94 ~~~a~~~~~~m~~~~~~----------------------------------------~~p~--~~~~~~li~~~~~~g~~ 131 (170)
+++|-+.+......... .=+| -..|++|..-|.+.|.+
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ 264 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLF 264 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhh
Confidence 77777666655322111 0112 23588899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHhc
Q 038114 132 NEAMSLFSEMRDRELIPDGLTVRSLLCACT 161 (170)
Q Consensus 132 ~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~ 161 (170)
++|..++++-... ..+..-|+.+.++|+
T Consensus 265 ekarDvyeeai~~--v~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 265 EKARDVYEEAIQT--VMTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHHHHHHHHh--heehhhHHHHHHHHH
Confidence 9999999876644 223444555555554
No 172
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.77 E-value=0.053 Score=44.20 Aligned_cols=108 Identities=16% Similarity=0.232 Sum_probs=68.8
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS 93 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 93 (170)
+.+-.....|..|+.+++-+ +..+. .+.-|.-+-..|+..|+++-|.++|.+- ..++-.|..|++.|+
T Consensus 739 ieaai~akew~kai~ildni-qdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNI-QDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHh-hhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 45556667777888887777 55443 2334677778888888898888887653 245667888888888
Q ss_pred HHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHH
Q 038114 94 LEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137 (170)
Q Consensus 94 ~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l 137 (170)
|+.|.++-.+.... +.....|-+-..-.-..|.+.+|+++
T Consensus 807 w~da~kla~e~~~~----e~t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 807 WEDAFKLAEECHGP----EATISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred HHHHHHHHHHhcCc----hhHHHHHHHhHHhHHhhcchhhhhhe
Confidence 88888887664322 22334444444444444444444443
No 173
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.77 E-value=0.18 Score=36.50 Aligned_cols=79 Identities=6% Similarity=0.061 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHh-----CCCCCCHhh
Q 038114 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD-----RELIPDGLT 152 (170)
Q Consensus 78 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~~~~p~~~t 152 (170)
..++..++..+..+|+.+.+...++++..... -+...|..++.+|.+.|+...|++.++.+.+ .|+.|...+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp---~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP---YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc---cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 45667788888889999999999998887654 6788999999999999999999999998875 589998888
Q ss_pred HHHHHHH
Q 038114 153 VRSLLCA 159 (170)
Q Consensus 153 ~~~ll~~ 159 (170)
.....+.
T Consensus 230 ~~~y~~~ 236 (280)
T COG3629 230 RALYEEI 236 (280)
T ss_pred HHHHHHH
Confidence 7766666
No 174
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.76 E-value=0.56 Score=36.32 Aligned_cols=116 Identities=10% Similarity=0.095 Sum_probs=84.8
Q ss_pred hhhHHHHHHHhhcccchHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHh-hcccCCCCCCCChhhHHH
Q 038114 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSK-SQPDVVLQNYILNMYGKCGSLEDARVVSD-EMPQRNVIESPDLASWNA 120 (170)
Q Consensus 43 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~-~m~~~~~~~~p~~~~~~~ 120 (170)
...|+..|++.-+...++.|..+|.+..+.| +.+++.+++++|..++. |+..-|.++|+ .|+..+- +..--+-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d----~~~y~~k 471 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPD----STLYKEK 471 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCC----chHHHHH
Confidence 4589999999999999999999999999998 68889999999988865 57788899998 4544322 2233355
Q ss_pred HHHHHhCCCChHHHHHHHHH----HHhCCCCCCHhhHHHHHHHhcCCCcc
Q 038114 121 IIAGVASPSNANEAMSLFSE----MRDRELIPDGLTVRSLLCACTSPSNV 166 (170)
Q Consensus 121 li~~~~~~g~~~~a~~l~~~----m~~~~~~p~~~t~~~ll~~~~~~g~~ 166 (170)
.+.-+.+.++-+.|..+|+. +.+... ...|..+|+-=++-|++
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~---k~iy~kmi~YEs~~G~l 518 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQL---KRIYDKMIEYESMVGSL 518 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhh---hHHHHHHHHHHHhhcch
Confidence 56677788888999999983 333322 34566666555555544
No 175
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.74 E-value=0.032 Score=31.76 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=41.9
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhc----CC-CCC-HHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILSS----KS-QPD-VVLQNYILNMYGKCGSLEDARVVSDEM 104 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m 104 (170)
+|+.+-.+|...|++++|...|++..+. |- .|+ ..+++.+-..|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5667777777888888888888777642 21 122 557777778888888888888887753
No 176
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.61 E-value=0.37 Score=32.47 Aligned_cols=58 Identities=9% Similarity=0.044 Sum_probs=24.7
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHh
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPD--VVLQNYILNMYGKCGSLEDARVVSD 102 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~ 102 (170)
.+..+-..|.+.|+.+.|.+.|..+.+....+. ...+-.+|+...-.+++..+.....
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ 97 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIE 97 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 344444444444444444444444444332222 2233344444444444444444333
No 177
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.52 E-value=0.32 Score=36.47 Aligned_cols=81 Identities=9% Similarity=0.005 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHH-HHHHhCCCChHHHHH
Q 038114 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI-IAGVASPSNANEAMS 136 (170)
Q Consensus 58 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~a~~ 136 (170)
.++++.-.+..+...=...|...+| +-.+++..|++.+|+++|-.+....+ +-+ .+|-.+ ..+|.+.+.++.|++
T Consensus 374 qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i--kn~-~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 374 QFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI--KNK-ILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh--hhh-HHHHHHHHHHHHhcCCchHHHH
Confidence 3444444444444332233444444 44777888999999999988877666 433 566555 578889999999988
Q ss_pred HHHHHH
Q 038114 137 LFSEMR 142 (170)
Q Consensus 137 l~~~m~ 142 (170)
++-.+.
T Consensus 450 ~~lk~~ 455 (557)
T KOG3785|consen 450 MMLKTN 455 (557)
T ss_pred HHHhcC
Confidence 876654
No 178
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.50 E-value=0.4 Score=36.98 Aligned_cols=62 Identities=8% Similarity=-0.147 Sum_probs=39.5
Q ss_pred hhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 038114 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV----VLQNYILNMYGKCGSLEDARVVSDEMPQ 106 (170)
Q Consensus 43 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~ 106 (170)
...++.+-.++...|++++|...|+...+. .|+. .+|..+-.+|.+.|++++|.+.+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 335666666666777777777777766554 2331 3466677777777777777777766554
No 179
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.49 E-value=0.21 Score=38.48 Aligned_cols=66 Identities=12% Similarity=-0.015 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCCh----hhHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 038114 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDL----ASWNAIIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 75 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
+.+...|+.+-.+|.+.|++++|...|+...+.+ |+. .+|..+-.+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3458899999999999999999999999877653 442 46999999999999999999999988775
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.46 E-value=0.59 Score=33.19 Aligned_cols=159 Identities=8% Similarity=-0.048 Sum_probs=100.0
Q ss_pred hHhHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhh---HHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038114 9 LRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPST---YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85 (170)
Q Consensus 9 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 85 (170)
..|.-...+.+.|++++|...|+.+ ...-..+ +.. .-.+..++-+.+++++|...+++..+....-...-|.-.+
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l-~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEAL-DNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 3444556667789999999999999 5533222 222 2355677889999999999999998863322234555555
Q ss_pred HHHHc-----------------CCCH---HHHHHHHhhcccCCCCC--CCChhhHH------------HHHHHHhCCCCh
Q 038114 86 NMYGK-----------------CGSL---EDARVVSDEMPQRNVIE--SPDLASWN------------AIIAGVASPSNA 131 (170)
Q Consensus 86 ~~~~~-----------------~~~~---~~a~~~~~~m~~~~~~~--~p~~~~~~------------~li~~~~~~g~~ 131 (170)
.+.+. .++. ..|...|+.+.+.=..+ .|+....- .+..-|-+.|.+
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y 191 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY 191 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 55441 1122 34556666655431100 22221111 222447888999
Q ss_pred HHHHHHHHHHHhC--CCCCCHhhHHHHHHHhcCCCccccC
Q 038114 132 NEAMSLFSEMRDR--ELIPDGLTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 132 ~~a~~l~~~m~~~--~~~p~~~t~~~ll~~~~~~g~~e~~ 169 (170)
.-|..=|+.+.+. +-.........+..+|.+.|..+++
T Consensus 192 ~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a 231 (243)
T PRK10866 192 VAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQA 231 (243)
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHH
Confidence 9999999988865 4555666777888999888877654
No 181
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=95.46 E-value=0.59 Score=39.39 Aligned_cols=87 Identities=9% Similarity=0.016 Sum_probs=45.6
Q ss_pred HHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 038114 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91 (170)
Q Consensus 12 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 91 (170)
+++..+....++..+..+...| ... .-+...+-.+-.+|-+.|+.+++..+|+++.+.. .-|+.+.|.+-..|...
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i-~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKI-LLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhhcccccchhHHHHHHHHH-Hhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence 3455555555554444444555 332 2233355555555666666666666666665554 33455555555555555
Q ss_pred CCHHHHHHHHhh
Q 038114 92 GSLEDARVVSDE 103 (170)
Q Consensus 92 ~~~~~a~~~~~~ 103 (170)
++++|.+++..
T Consensus 164 -dL~KA~~m~~K 174 (906)
T PRK14720 164 -DKEKAITYLKK 174 (906)
T ss_pred -hHHHHHHHHHH
Confidence 55555554443
No 182
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.45 E-value=0.94 Score=35.38 Aligned_cols=123 Identities=15% Similarity=0.097 Sum_probs=94.4
Q ss_pred cccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 038114 18 PIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97 (170)
Q Consensus 18 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 97 (170)
.++.+...|++++-.. -|..|..-+|..-|..=...+.++.+..+|+...+.+ +-+..+|.-.-..=...|+.+.|
T Consensus 415 IRq~~l~~ARkiLG~A---IG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRa 490 (677)
T KOG1915|consen 415 IRQLNLTGARKILGNA---IGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRA 490 (677)
T ss_pred HHHcccHHHHHHHHHH---hccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHH
Confidence 4567778888887655 6788999999999998889999999999999999876 33567777776666778999999
Q ss_pred HHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCC
Q 038114 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145 (170)
Q Consensus 98 ~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 145 (170)
..+|+-..+.... .-....|-+.|.-=...|.+++|..+++.+.+..
T Consensus 491 RaifelAi~qp~l-dmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 491 RAIFELAISQPAL-DMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHHhcCccc-ccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 9999976543211 2233455555655577899999999999998764
No 183
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=95.41 E-value=0.41 Score=31.07 Aligned_cols=91 Identities=9% Similarity=0.106 Sum_probs=43.8
Q ss_pred hhCCCCcchh--hHHHHHHHhhcccchHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHcCCC-HHHHHHHHhhccc
Q 038114 35 NNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSK-----SQPDVVLQNYILNMYGKCGS-LEDARVVSDEMPQ 106 (170)
Q Consensus 35 ~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~ 106 (170)
++.+..++.. ..++++.-.+..+.+....++++.+..-. -..+...|.+++++.++... --.+..+|.-|++
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 3344444433 34555555555555555555555552210 02233445555555544443 3334445555555
Q ss_pred CCCCCCCChhhHHHHHHHHhC
Q 038114 107 RNVIESPDLASWNAIIAGVAS 127 (170)
Q Consensus 107 ~~~~~~p~~~~~~~li~~~~~ 127 (170)
.+. +++..-|..+|.++.+
T Consensus 109 ~~~--~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 109 NDI--EFTPSDYSCLIKAALR 127 (145)
T ss_pred cCC--CCCHHHHHHHHHHHHc
Confidence 445 5555555555555544
No 184
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.33 E-value=0.27 Score=35.64 Aligned_cols=88 Identities=16% Similarity=0.066 Sum_probs=63.3
Q ss_pred hhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCH
Q 038114 16 SQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD-VVLQNYILNMYGKCGSL 94 (170)
Q Consensus 16 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~ 94 (170)
-+.+.+++.+|+..|.+. .... +-|++-|+---.+|.+.|.++.|.+--+.-..- .|+ ..+|..|=.+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~A-I~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEA-IELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHH-HhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence 356778888888888887 4321 235666777778888888888777766655543 444 56888888888888888
Q ss_pred HHHHHHHhhcccC
Q 038114 95 EDARVVSDEMPQR 107 (170)
Q Consensus 95 ~~a~~~~~~m~~~ 107 (170)
++|.+-|++..+.
T Consensus 166 ~~A~~aykKaLel 178 (304)
T KOG0553|consen 166 EEAIEAYKKALEL 178 (304)
T ss_pred HHHHHHHHhhhcc
Confidence 8888888776543
No 185
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.22 E-value=0.67 Score=36.87 Aligned_cols=121 Identities=12% Similarity=0.126 Sum_probs=84.4
Q ss_pred hHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHH--HHHHH
Q 038114 11 FTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY--ILNMY 88 (170)
Q Consensus 11 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--li~~~ 88 (170)
|+=++.+.++|.+++|.+.-.++ ...+ +-+...+..=+-+....+.+++|+.+.+. .+. ..+++. +=++|
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Ki-l~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAY 87 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKI-LSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAY 87 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHH-HhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHH
Confidence 33488889999999999999999 6655 33445666667778888999988854432 221 112222 35666
Q ss_pred H--cCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCC
Q 038114 89 G--KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145 (170)
Q Consensus 89 ~--~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 145 (170)
| +.+..++|...+..... .+..+-..-...|-+.|++++|+.+++.+.+.+
T Consensus 88 c~Yrlnk~Dealk~~~~~~~------~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDR------LDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HHHHcccHHHHHHHHhcccc------cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 6 56889999999883322 222355555677888999999999999996554
No 186
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=95.13 E-value=0.73 Score=33.45 Aligned_cols=110 Identities=13% Similarity=0.109 Sum_probs=83.6
Q ss_pred HHhhhcc--cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHH
Q 038114 13 FYNSQPI--QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS-KSQPDVVLQNYILNMYG 89 (170)
Q Consensus 13 li~~~~~--~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~ 89 (170)
+++.... ......-.++.+.+....+-.++..+...+|..+++.+++....+++...... +..-|...|..+|+...
T Consensus 170 LL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~ 249 (292)
T PF13929_consen 170 LLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIV 249 (292)
T ss_pred HHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHH
Confidence 4555544 22455566777777556667789999999999999999999999999988765 66778999999999999
Q ss_pred cCCCHHHHHHHHhh-----cccCCCCCCCChhhHHHHHHH
Q 038114 90 KCGSLEDARVVSDE-----MPQRNVIESPDLASWNAIIAG 124 (170)
Q Consensus 90 ~~~~~~~a~~~~~~-----m~~~~~~~~p~~~~~~~li~~ 124 (170)
..|+..-+.++.++ .++.++ ..+...-..+-..
T Consensus 250 ~sgD~~~~~kiI~~GhLLwikR~~V--~v~~~L~~~L~~L 287 (292)
T PF13929_consen 250 ESGDQEVMRKIIDDGHLLWIKRNNV--DVTDELRSQLSEL 287 (292)
T ss_pred HcCCHHHHHHHhhCCCeEEeeecCC--cCCHHHHHHHHHH
Confidence 99999999999885 356666 4554444444333
No 187
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.92 Score=32.97 Aligned_cols=116 Identities=9% Similarity=-0.017 Sum_probs=86.0
Q ss_pred ccccchhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhh-HHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHH
Q 038114 3 RNLKTQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPST-YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80 (170)
Q Consensus 3 ~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 80 (170)
.+..|...|- |-..|.+.|+++.|...|...-+..|-.|+... |...+..-+......++..+|++..... +-|+..
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ira 229 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRA 229 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHH
Confidence 3456788899 799999999999999999998455665555442 3333333334455788999999998864 446888
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHH
Q 038114 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIA 123 (170)
Q Consensus 81 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~ 123 (170)
..-|-..+...|++.+|...|+.|.+... |+ ..+..+|.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp---~~-~~rr~~ie 268 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLP---AD-DPRRSLIE 268 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCC---CC-CchHHHHH
Confidence 88888999999999999999999987644 33 34555553
No 188
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=95.03 E-value=0.4 Score=28.80 Aligned_cols=48 Identities=8% Similarity=0.032 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 038114 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105 (170)
Q Consensus 58 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 105 (170)
+.-++.+-++.+....+.|++.+..+-+++|-|.+++..|.++|+..+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555555555556666666666666666666666666666666555
No 189
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.96 E-value=0.43 Score=34.58 Aligned_cols=78 Identities=8% Similarity=-0.029 Sum_probs=64.8
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcc-----cCCCCCCCChhhHH
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP-----QRNVIESPDLASWN 119 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~~~~~~p~~~~~~ 119 (170)
++..++..+...++.+.+...++++.... +-+...|-.+|.+|.+.|+...|.+.|+.+. ..|+ .|...+..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi--~P~~~~~~ 231 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI--DPAPELRA 231 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC--CccHHHHH
Confidence 55667888888899999999999998875 5578899999999999999999999998765 4688 88888877
Q ss_pred HHHHHH
Q 038114 120 AIIAGV 125 (170)
Q Consensus 120 ~li~~~ 125 (170)
......
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 777663
No 190
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=94.96 E-value=1.3 Score=35.96 Aligned_cols=145 Identities=12% Similarity=0.027 Sum_probs=72.8
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCC
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD-VVLQNYILNMYGKCG 92 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~ 92 (170)
+.--..+..++.|+.+|.+. +. ..|+...|..-++.---.+..++|.+++++..+. -|+ ...|--+-..+-+.+
T Consensus 625 vKle~en~e~eraR~llaka-r~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 625 VKLEFENDELERARDLLAKA-RS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HHHhhccccHHHHHHHHHHH-hc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHH
Confidence 55556666677777777666 33 4455555555555555556666666666655543 222 334444444444445
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhh-HHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCcccc
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLAS-WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~ 168 (170)
+.+.|.+.|..=... .|+... |-.+...=-+.|+.-+|..+++.-+..+ .-+...|...|+.=.++|..+.
T Consensus 700 ~ie~aR~aY~~G~k~----cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 700 NIEMAREAYLQGTKK----CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred HHHHHHHHHHhcccc----CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHH
Confidence 555555444432211 333222 2222222234445666666665554443 2244555555555555555443
No 191
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.91 E-value=0.55 Score=30.40 Aligned_cols=87 Identities=11% Similarity=0.029 Sum_probs=58.1
Q ss_pred cchhHhHHHhhhcccCCHHHHHHHHHHHHhhCCCCc-chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038114 6 KTQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRI-RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84 (170)
Q Consensus 6 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 84 (170)
++...|+--....+.|++++|.+.|+.+..+.-..| ....--.++.++.+.+++++|...++.+.+....-.-.-|...
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 444445556666788889999888888833332222 3446677888888888999998888888875432223566666
Q ss_pred HHHHHcCC
Q 038114 85 LNMYGKCG 92 (170)
Q Consensus 85 i~~~~~~~ 92 (170)
+.+++.-.
T Consensus 89 ~~gL~~~~ 96 (142)
T PF13512_consen 89 MRGLSYYE 96 (142)
T ss_pred HHHHHHHH
Confidence 66665443
No 192
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.90 E-value=0.18 Score=37.06 Aligned_cols=93 Identities=14% Similarity=0.039 Sum_probs=69.7
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCC--CCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTN--FRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 90 (170)
++..-.+..+++++...+-+++...+ ..|+. +-.++++.|-+. +++.+..+...-.+.|+-||.++++.+|+.+.+
T Consensus 70 ~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllky-~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk 147 (418)
T KOG4570|consen 70 LVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLKY-DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLK 147 (418)
T ss_pred hhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHcc-ChHHHHHHHhCcchhccccchhhHHHHHHHHHh
Confidence 35555667788899888877722222 23333 334455655555 577999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhcccC
Q 038114 91 CGSLEDARVVSDEMPQR 107 (170)
Q Consensus 91 ~~~~~~a~~~~~~m~~~ 107 (170)
.+++.+|.++...|...
T Consensus 148 ~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 148 KENYKDAASVVTEVMMQ 164 (418)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 99999999987776544
No 193
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.89 E-value=0.57 Score=34.08 Aligned_cols=102 Identities=16% Similarity=0.102 Sum_probs=79.2
Q ss_pred hcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHH
Q 038114 54 SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANE 133 (170)
Q Consensus 54 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 133 (170)
.+.+++++|...|.+..+.. +-|.+-|..--.+|.+.|.++.|.+=.+.-..-+. -...+|..|=.+|...|++++
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp---~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP---HYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHccCcHHH
Confidence 45577888888888887753 34688888888999999999999988777654433 235789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHhc
Q 038114 134 AMSLFSEMRDRELIPDGLTVRSLLCACT 161 (170)
Q Consensus 134 a~~l~~~m~~~~~~p~~~t~~~ll~~~~ 161 (170)
|.+-|++-. .+.|+-.+|-.=|+...
T Consensus 168 A~~aykKaL--eldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 168 AIEAYKKAL--ELDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHhhh--ccCCCcHHHHHHHHHHH
Confidence 999988544 56788888776666543
No 194
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.86 E-value=0.17 Score=30.72 Aligned_cols=47 Identities=9% Similarity=0.068 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 038114 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106 (170)
Q Consensus 60 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 106 (170)
-+..+-+..+....+.|++.+..+.+++|-|.+++..|.++|+..+.
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34555555555666666777777777777777777777777766654
No 195
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.48 Score=37.38 Aligned_cols=114 Identities=18% Similarity=0.076 Sum_probs=86.5
Q ss_pred chhHhH-HHhhhcccCCHHHHHHHHHHHHhhC-----CCCc-chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHH
Q 038114 7 TQLRFT-FYNSQPIQNLYNEALVAFDFLQNNT-----NFRI-RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79 (170)
Q Consensus 7 ~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 79 (170)
++...+ +--..-+.+.+.+|...|... ... .-.+ ...+++-|=++|.+.+.+++|...|++-.... +-+..
T Consensus 413 Dplv~~Elgvvay~~~~y~~A~~~f~~~-l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~ 490 (611)
T KOG1173|consen 413 DPLVLHELGVVAYTYEEYPEALKYFQKA-LEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDAS 490 (611)
T ss_pred cchhhhhhhheeehHhhhHHHHHHHHHH-HHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchh
Confidence 445555 544445678889999998876 411 1111 34468888899999999999999999988764 66889
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHh
Q 038114 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVA 126 (170)
Q Consensus 80 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~ 126 (170)
+++++--.|...|+++.|.+-|.+-.. + +|+-.+-+.++..+.
T Consensus 491 ~~asig~iy~llgnld~Aid~fhKaL~--l--~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 491 THASIGYIYHLLGNLDKAIDHFHKALA--L--KPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHh--c--CCccHHHHHHHHHHH
Confidence 999999999999999999999998654 3 778777777776543
No 196
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.64 E-value=0.027 Score=36.26 Aligned_cols=88 Identities=13% Similarity=0.122 Sum_probs=67.8
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHh
Q 038114 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVA 126 (170)
Q Consensus 47 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~ 126 (170)
..+|..+.+.+.++....+++.+...+...+....+.++..|++.+..+...+.++.... . -...++..|-
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~--y-------d~~~~~~~c~ 81 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN--Y-------DLDKALRLCE 81 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS--S--------CTHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc--c-------CHHHHHHHHH
Confidence 346788888999999999999999877677899999999999999888888888884333 2 2345677777
Q ss_pred CCCChHHHHHHHHHHHh
Q 038114 127 SPSNANEAMSLFSEMRD 143 (170)
Q Consensus 127 ~~g~~~~a~~l~~~m~~ 143 (170)
+.|.++.|..++..+..
T Consensus 82 ~~~l~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 82 KHGLYEEAVYLYSKLGN 98 (143)
T ss_dssp TTTSHHHHHHHHHCCTT
T ss_pred hcchHHHHHHHHHHccc
Confidence 77888888877776643
No 197
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.59 E-value=0.59 Score=36.48 Aligned_cols=126 Identities=7% Similarity=-0.002 Sum_probs=84.0
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
+-..|.+..+.++.+..|+.. ..... -++.+|..--....-.++++.|..=|+..+.-. +-++..|--+--+.-|.+
T Consensus 366 ~a~~y~d~~~~~~~~~~F~~A-~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~ 442 (606)
T KOG0547|consen 366 RAAAYADENQSEKMWKDFNKA-EDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQH 442 (606)
T ss_pred HHHHHhhhhccHHHHHHHHHH-HhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHH
Confidence 566777778888888888877 43321 233444444344444567777777777766532 223555555656666778
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
.+++++..|++.+.+ + +-.+..||.....+...+++++|.+.|+.-...
T Consensus 443 k~~~~m~~Fee~kkk-F--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 443 KIAESMKTFEEAKKK-F--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHHHHh-C--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 888888888887754 2 344567888888888888899998888876543
No 198
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.58 E-value=1.2 Score=32.24 Aligned_cols=142 Identities=11% Similarity=0.043 Sum_probs=86.7
Q ss_pred cccCCHHHHHHHHHHHHh---hCCCC-cchhhHHHHHHHhhcc-cchHHHHHHHHHHHhc----CCCCC--HHHHHHHHH
Q 038114 18 PIQNLYNEALVAFDFLQN---NTNFR-IRPSTYACLISTCSSL-RSLQLGRKVHDHILSS----KSQPD--VVLQNYILN 86 (170)
Q Consensus 18 ~~~~~~~~a~~~~~~m~~---~~~~~-p~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~----~~~~~--~~~~~~li~ 86 (170)
.+..++++|...+++... ..|-. --...+..+-..|... |+++.|.+.|.+..+. | .+. ...+..+..
T Consensus 85 ~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 85 YKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 344488888888877621 22321 1223666777778887 8999999999887652 3 222 346667778
Q ss_pred HHHcCCCHHHHHHHHhhcccCCCC---CCCChh--hHHHHHHHHhCCCChHHHHHHHHHHHhC--CCCC--CHhhHHHHH
Q 038114 87 MYGKCGSLEDARVVSDEMPQRNVI---ESPDLA--SWNAIIAGVASPSNANEAMSLFSEMRDR--ELIP--DGLTVRSLL 157 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~~~~---~~p~~~--~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~p--~~~t~~~ll 157 (170)
.+.+.|++++|.++|++....-.. .++++. .++++|. +...|+...|...|++.... ++.. .......||
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~-~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~ 242 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILC-HLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLL 242 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHH-HHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 899999999999999987543221 023332 2345554 44458999999999988754 3332 244456666
Q ss_pred HHhc
Q 038114 158 CACT 161 (170)
Q Consensus 158 ~~~~ 161 (170)
.+|-
T Consensus 243 ~A~~ 246 (282)
T PF14938_consen 243 EAYE 246 (282)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 199
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.53 E-value=0.73 Score=29.43 Aligned_cols=87 Identities=11% Similarity=0.079 Sum_probs=61.2
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHH
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~ 124 (170)
....++..+...+.......+++.+...+ ..++..+|.+|..|++.. .+...+.+.. .. +......++..
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~------~~yd~~~~~~~ 78 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KS------NHYDIEKVGKL 78 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--cc------ccCCHHHHHHH
Confidence 45577888888889999999999998887 478889999999999874 3444555552 11 11344456666
Q ss_pred HhCCCChHHHHHHHHHH
Q 038114 125 VASPSNANEAMSLFSEM 141 (170)
Q Consensus 125 ~~~~g~~~~a~~l~~~m 141 (170)
|.+.+-++.+..++..+
T Consensus 79 c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 79 CEKAKLYEEAVELYKKD 95 (140)
T ss_pred HHHcCcHHHHHHHHHhh
Confidence 66666666666666655
No 200
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=94.52 E-value=0.79 Score=29.79 Aligned_cols=99 Identities=14% Similarity=0.176 Sum_probs=74.5
Q ss_pred HHHhcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHhhcccCC---CCCCCChhhHHHHHHHHhCCCC-hHHHHHHHHHH
Q 038114 68 HILSSKSQPD--VVLQNYILNMYGKCGSLEDARVVSDEMPQRN---VIESPDLASWNAIIAGVASPSN-ANEAMSLFSEM 141 (170)
Q Consensus 68 ~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~p~~~~~~~li~~~~~~g~-~~~a~~l~~~m 141 (170)
.|++.+..++ ....|+++.-....+++.....+++.+.... +.-..+..+|.+++.+.+.... .--+..+|.-|
T Consensus 27 y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 27 YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 3444455555 3467888888888899999999888774221 1013456789999999988777 55678899999
Q ss_pred HhCCCCCCHhhHHHHHHHhcCCCcc
Q 038114 142 RDRELIPDGLTVRSLLCACTSPSNV 166 (170)
Q Consensus 142 ~~~~~~p~~~t~~~ll~~~~~~g~~ 166 (170)
++.+.+++..-|..+|+++.+--..
T Consensus 107 k~~~~~~t~~dy~~li~~~l~g~~~ 131 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALRGYFH 131 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHcCCCC
Confidence 9989999999999999999876433
No 201
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=94.48 E-value=1.3 Score=36.34 Aligned_cols=128 Identities=10% Similarity=-0.011 Sum_probs=98.6
Q ss_pred HhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038114 10 RFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY 88 (170)
Q Consensus 10 ~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 88 (170)
.|. .-..+.+.++.+++...+.+. ... .+.....|...=..+...|..++|.+.|..-..-. +-++..-+++-..+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea-~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEA-SKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHH-Hhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 344 467788889999999888877 332 23445556555566667788999999888776542 22477889999999
Q ss_pred HcCCCHHHHHH--HHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHh
Q 038114 89 GKCGSLEDARV--VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 89 ~~~~~~~~a~~--~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 143 (170)
.+.|+...|.. ++.++.+.+. .+...|-.+-..+-..|+.++|-+.|.--.+
T Consensus 729 le~G~~~la~~~~~L~dalr~dp---~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLDP---LNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999888888 8999887766 5667899999999999999999999986654
No 202
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.48 E-value=0.48 Score=39.35 Aligned_cols=97 Identities=15% Similarity=0.064 Sum_probs=74.1
Q ss_pred ccchhHhHHHhhh--cccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHH
Q 038114 5 LKTQLRFTFYNSQ--PIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82 (170)
Q Consensus 5 ~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 82 (170)
.|+....-.+.++ .+.|+.++|..+++.. ...+.. |..|...+-.+|.+.++.+++..+|+...+. -|+-....
T Consensus 39 ~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~-~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~ 114 (932)
T KOG2053|consen 39 HPNALYAKVLKALSLFRLGKGDEALKLLEAL-YGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLY 114 (932)
T ss_pred CCCcHHHHHHHHHHHHHhcCchhHHHHHhhh-ccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHH
Confidence 3444433355554 6789999999888888 555544 8889999999999999999999999998765 56677888
Q ss_pred HHHHHHHcCCCHHH----HHHHHhhcc
Q 038114 83 YILNMYGKCGSLED----ARVVSDEMP 105 (170)
Q Consensus 83 ~li~~~~~~~~~~~----a~~~~~~m~ 105 (170)
.+..+|.|.+++.+ |.+++....
T Consensus 115 ~lFmayvR~~~yk~qQkaa~~LyK~~p 141 (932)
T KOG2053|consen 115 HLFMAYVREKSYKKQQKAALQLYKNFP 141 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 88899999988765 445555433
No 203
>PRK15331 chaperone protein SicA; Provisional
Probab=94.41 E-value=0.52 Score=31.30 Aligned_cols=84 Identities=7% Similarity=-0.155 Sum_probs=37.7
Q ss_pred ccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHH
Q 038114 56 LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135 (170)
Q Consensus 56 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 135 (170)
.|++++|..+|.-+...+. -+..-|..|-.++-..+++++|...|...-..+. -|...+-..-.++...|+.+.|.
T Consensus 50 ~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~---~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK---NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred CCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---CCCCccchHHHHHHHhCCHHHHH
Confidence 4555555555555544321 1233344444444444555555555553322221 11122223334444455555555
Q ss_pred HHHHHHHh
Q 038114 136 SLFSEMRD 143 (170)
Q Consensus 136 ~l~~~m~~ 143 (170)
..|..-..
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55554443
No 204
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.35 E-value=0.93 Score=38.27 Aligned_cols=127 Identities=9% Similarity=-0.153 Sum_probs=75.2
Q ss_pred hhcccCCHHHHHHHHHHHHhhCCCCcch----hhHHHHHHHhhcccchHHHHHHHHHHHhc----CC-CCCHHHHHHHHH
Q 038114 16 SQPIQNLYNEALVAFDFLQNNTNFRIRP----STYACLISTCSSLRSLQLGRKVHDHILSS----KS-QPDVVLQNYILN 86 (170)
Q Consensus 16 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~li~ 86 (170)
.+...|++++|...+++. ...-...+. ...+.+-..+...|+++.|...+.+.... |- ......+..+-.
T Consensus 461 ~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 461 VAINDGDPEEAERLAELA-LAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHhCCCHHHHHHHHHHH-HhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 345678888998888886 432111111 13344445566788888888888877642 21 111234455566
Q ss_pred HHHcCCCHHHHHHHHhhccc----CCCCCCC-ChhhHHHHHHHHhCCCChHHHHHHHHHHHh
Q 038114 87 MYGKCGSLEDARVVSDEMPQ----RNVIESP-DLASWNAIIAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~----~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 143 (170)
.+...|++++|...+++... .+....| ....+..+...+...|++++|...+.+...
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 67788888888888776432 1210001 122344444556667888888888877654
No 205
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=94.26 E-value=2.1 Score=34.63 Aligned_cols=101 Identities=14% Similarity=0.071 Sum_probs=75.7
Q ss_pred ccchhHhH---HHhhhcccCCHHHHHHHHHHHHhhCCCCcchh-hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHH
Q 038114 5 LKTQLRFT---FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPS-TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80 (170)
Q Consensus 5 ~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 80 (170)
.|++..|+ +..++-..|+++.|...++.. -. -.|+.. .|-+=-+.+.-.|+++.|..++++.++.. .+|...
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~A-Id--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~I 441 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA-ID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAI 441 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHH-hc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHH
Confidence 56777787 488899999999999999888 32 234433 33333355667799999999999998775 556666
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcccCCC
Q 038114 81 QNYILNMYGKCGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 81 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 109 (170)
-+--.+-..+..+.++|.++.......|.
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 65677788889999999999888776654
No 206
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=94.22 E-value=0.9 Score=37.04 Aligned_cols=88 Identities=15% Similarity=0.144 Sum_probs=68.8
Q ss_pred HhhcccchHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCC
Q 038114 52 TCSSLRSLQLGRKVHDHILSSKSQPD-VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN 130 (170)
Q Consensus 52 ~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~ 130 (170)
+..+.++++.+.+.|.....- .|| ...||++=.+|.+.+.-.+|...+.+..+.+. -+...|...+......|+
T Consensus 528 ~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~---~~w~iWENymlvsvdvge 602 (777)
T KOG1128|consen 528 AALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY---QHWQIWENYMLVSVDVGE 602 (777)
T ss_pred HHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC---CCCeeeechhhhhhhccc
Confidence 344566777777777776653 454 77999999999999999999999998876655 233567777788889999
Q ss_pred hHHHHHHHHHHHhC
Q 038114 131 ANEAMSLFSEMRDR 144 (170)
Q Consensus 131 ~~~a~~l~~~m~~~ 144 (170)
+++|++.+.++.+.
T Consensus 603 ~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 603 FEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999888654
No 207
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.22 E-value=0.45 Score=34.49 Aligned_cols=129 Identities=9% Similarity=0.053 Sum_probs=81.3
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhh----CCCCc-chhhHHHHHHHhhcccchHHHHHHHHHHHh----cCCCCC--HHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNN----TNFRI-RPSTYACLISTCSSLRSLQLGRKVHDHILS----SKSQPD--VVLQ 81 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~----~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~--~~~~ 81 (170)
.-..|-..|++++|.+.|.+. .. .+-+. -...|.....+|.+. ++++|...+.+..+ .| .|+ ...+
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kA-a~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~ 117 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKA-ADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCL 117 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHH-HHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHH
Confidence 466677778888888888776 32 12111 122455555555444 78888887777654 34 333 4477
Q ss_pred HHHHHHHHcC-CCHHHHHHHHhhcccC----CCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCC
Q 038114 82 NYILNMYGKC-GSLEDARVVSDEMPQR----NVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145 (170)
Q Consensus 82 ~~li~~~~~~-~~~~~a~~~~~~m~~~----~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 145 (170)
..+-..|-.. |+++.|.+.|++..+. +.. .--..++..+...+.+.|++++|.++|++.....
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~-~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP-HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H-HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 7777778888 8999999888865321 210 1123456777888999999999999999987653
No 208
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=94.17 E-value=1.5 Score=35.30 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=79.8
Q ss_pred CcchhhH--HHHHHHhhcccchHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChh
Q 038114 40 RIRPSTY--ACLISTCSSLRSLQLGRKVHDHILSSKSQPD-VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLA 116 (170)
Q Consensus 40 ~p~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~ 116 (170)
+|++..| --+...+-+.|+++.|....+...++ .|+ +..|-.=-+.+...|++++|..++++..+.+. ||..
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~---aDR~ 440 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT---ADRA 440 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc---hhHH
Confidence 4555544 45667788899999999999988765 666 44565556788899999999999999888766 7766
Q ss_pred hHHHHHHHHhCCCChHHHHHHHHHHHhCCC
Q 038114 117 SWNAIIAGVASPSNANEAMSLFSEMRDREL 146 (170)
Q Consensus 117 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 146 (170)
.-+.-..-..++++.++|..+.....+.|.
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 555666777888999999999998888775
No 209
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.12 E-value=0.71 Score=38.51 Aligned_cols=118 Identities=9% Similarity=0.081 Sum_probs=63.9
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCC--------cchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCH
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFR--------IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV 78 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~--------p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 78 (170)
...|. +-+.|.+.++.+-|.-.+-.|+..+|.+ |+ .+=..+--.....|.+++|+.+|.+.++
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------- 828 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR------- 828 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-------
Confidence 34455 6666666666666555555553333321 11 1111111122345666666666666553
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHH
Q 038114 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140 (170)
Q Consensus 79 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~ 140 (170)
|..|-+.|-..|+|++|.++-+.-..-.+ ..||-.-..-+-..++.+.|++.|++
T Consensus 829 --~DLlNKlyQs~g~w~eA~eiAE~~DRiHL-----r~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 829 --YDLLNKLYQSQGMWSEAFEIAETKDRIHL-----RNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred --HHHHHHHHHhcccHHHHHHHHhhccceeh-----hhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 33455666677888888887765332222 14555555556666777777777764
No 210
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.99 E-value=2.1 Score=32.69 Aligned_cols=128 Identities=16% Similarity=0.175 Sum_probs=77.1
Q ss_pred ccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHH
Q 038114 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD-VVLQNYILNMYGKCGSLEDA 97 (170)
Q Consensus 19 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a 97 (170)
-.|++++|.+-|+.| ... .+...--+..|.-..-+.|..+.|.+.-+.--+. -|. ...+.+.+...|..|+|+.|
T Consensus 132 ~eG~~~~Ar~kfeAM-l~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAM-LDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHH-hcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHH
Confidence 357777777777777 321 0011112223333334566666666665555433 222 56777888888888899888
Q ss_pred HHHHhhcccCCCC-------------------------------------CCCChhhHHHH-HHHHhCCCChHHHHHHHH
Q 038114 98 RVVSDEMPQRNVI-------------------------------------ESPDLASWNAI-IAGVASPSNANEAMSLFS 139 (170)
Q Consensus 98 ~~~~~~m~~~~~~-------------------------------------~~p~~~~~~~l-i~~~~~~g~~~~a~~l~~ 139 (170)
+++++.-++..++ ..||.+.--.+ ..++.+.|+..++-.+++
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 8888765443332 15554443333 366778888888888888
Q ss_pred HHHhCCCCCCH
Q 038114 140 EMRDRELIPDG 150 (170)
Q Consensus 140 ~m~~~~~~p~~ 150 (170)
.+-+..-.|+.
T Consensus 288 ~aWK~ePHP~i 298 (531)
T COG3898 288 TAWKAEPHPDI 298 (531)
T ss_pred HHHhcCCChHH
Confidence 87766555554
No 211
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=93.96 E-value=0.72 Score=27.13 Aligned_cols=68 Identities=15% Similarity=0.094 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHH
Q 038114 61 LGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136 (170)
Q Consensus 61 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 136 (170)
.+.++++.+.+.| ..+......+-.+-...|+.+.|.+++..+. +|. ..|+.++.++-..|+-+.|.+
T Consensus 20 ~~~~v~d~ll~~~-ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~------~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 20 KTRDVCDKCLEQG-LLTEEDRNRIEAATENHGNESGARELLKRIV-QKE------GWFSKFLQALRETEHHELARE 87 (88)
T ss_pred hHHHHHHHHHhcC-CCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC------cHHHHHHHHHHHcCchhhhhc
Confidence 3557888888888 4455556665555556788999999999998 777 689999999998888777654
No 212
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.83 E-value=1.4 Score=30.20 Aligned_cols=159 Identities=11% Similarity=-0.031 Sum_probs=94.3
Q ss_pred hhHhHHHhhhcccCCHHHHHHHHHHHHhhCCC-CcchhhHHHHHHHhhcccchHHHHHHHHHHHhcC-CCCCHHHHHHHH
Q 038114 8 QLRFTFYNSQPIQNLYNEALVAFDFLQNNTNF-RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK-SQPDVVLQNYIL 85 (170)
Q Consensus 8 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li 85 (170)
...|..-..+.+.|++.+|...|+.+...... +-.....-.+..++-+.|+++.|...++.+.+.- -.| ..-+...+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-~~~~A~Y~ 84 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-KADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-THHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-chhhHHHH
Confidence 34455677788999999999999999333222 2233356677888999999999999999988752 222 22333333
Q ss_pred HHHHc----------C---CCHHHHHHHHhhcccCCCCC--CCChhhH------------HHHHHHHhCCCChHHHHHHH
Q 038114 86 NMYGK----------C---GSLEDARVVSDEMPQRNVIE--SPDLASW------------NAIIAGVASPSNANEAMSLF 138 (170)
Q Consensus 86 ~~~~~----------~---~~~~~a~~~~~~m~~~~~~~--~p~~~~~------------~~li~~~~~~g~~~~a~~l~ 138 (170)
.+.+. . +...+|...|+.+...-..+ .++.... -.+..-|.+.|.+..|..-+
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~ 164 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRF 164 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 33332 1 22456777777765432210 1111111 11235678899999999999
Q ss_pred HHHHhC--CCCCCHhhHHHHHHHhcCCCccc
Q 038114 139 SEMRDR--ELIPDGLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 139 ~~m~~~--~~~p~~~t~~~ll~~~~~~g~~e 167 (170)
+.+.+. +..-.......++.+|.+.|..+
T Consensus 165 ~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 165 QYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 988875 22223345577777777776543
No 213
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.79 E-value=0.52 Score=28.34 Aligned_cols=64 Identities=9% Similarity=0.047 Sum_probs=50.3
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~ 159 (170)
+.-++.+-+..+-..+. .|++....+.+.+|-|.+++..|.++|+-.+.+. ..+...|..+++-
T Consensus 22 D~we~rr~mN~l~~~Dl--VP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGYDL--VPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhcccc--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHHH
Confidence 45566777777778888 8999999999999999999999999999777442 2245577777654
No 214
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=93.79 E-value=0.75 Score=33.29 Aligned_cols=87 Identities=10% Similarity=0.032 Sum_probs=59.9
Q ss_pred HHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHH----
Q 038114 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGV---- 125 (170)
Q Consensus 50 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~---- 125 (170)
|.+++..+++.++..+.-+.-+.--+..+.+.-..|-.|.|.+.+..+.++-+...+..- .-+...|.+++..|
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~--Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS--NQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc--cCCchhhHHHHHHHHHHH
Confidence 788888888888877766665544444566677777788888888888888776654433 23334577766554
Q ss_pred -hCCCChHHHHHHH
Q 038114 126 -ASPSNANEAMSLF 138 (170)
Q Consensus 126 -~~~g~~~~a~~l~ 138 (170)
.-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 4558888887776
No 215
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=2.6 Score=32.50 Aligned_cols=148 Identities=17% Similarity=0.157 Sum_probs=85.2
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHH
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD----VVLQNYILNMYG 89 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~ 89 (170)
..+++..++...+...+-.++...-++-|......+-..+...|+.+++...|++.+.. .|+ .-.|.-|+ .
T Consensus 203 a~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL---~ 277 (564)
T KOG1174|consen 203 ALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLL---G 277 (564)
T ss_pred HHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHH---H
Confidence 44455556777777777777556667778888899999999999999999999888743 222 12333332 2
Q ss_pred cCCCHHHHHHHHhhcccCC-------CC---------------------CCCChhhHHHHH---HHHhCCCChHHHHHHH
Q 038114 90 KCGSLEDARVVSDEMPQRN-------VI---------------------ESPDLASWNAII---AGVASPSNANEAMSLF 138 (170)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~~-------~~---------------------~~p~~~~~~~li---~~~~~~g~~~~a~~l~ 138 (170)
+.|+.+....+...+-... ++ ...+....-.+| ..+...|++++|.--|
T Consensus 278 ~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaF 357 (564)
T KOG1174|consen 278 QEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAF 357 (564)
T ss_pred hccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHH
Confidence 3344433333222221000 00 012222222222 3445566777777777
Q ss_pred HHHHhCCCCC-CHhhHHHHHHHhcCCCcccc
Q 038114 139 SEMRDRELIP-DGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 139 ~~m~~~~~~p-~~~t~~~ll~~~~~~g~~e~ 168 (170)
+.-+ .+.| +...|.-|+..|...|++.|
T Consensus 358 R~Aq--~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 358 RTAQ--MLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred HHHH--hcchhhHHHHHHHHHHHHhhchHHH
Confidence 6544 3343 55677788887777776654
No 216
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.63 E-value=1.9 Score=36.43 Aligned_cols=130 Identities=8% Similarity=0.049 Sum_probs=85.0
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhC----CC-CcchhhHHHHHHHhhcccchHHHHHHHHHHHh----cCCC--C-CHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNT----NF-RIRPSTYACLISTCSSLRSLQLGRKVHDHILS----SKSQ--P-DVVL 80 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~----~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~--~-~~~~ 80 (170)
+-..+...|++++|...+++. ... |- .+-..++..+-..+...|+++.|...+.+..+ .+.. + ....
T Consensus 497 lg~~~~~~G~~~~A~~~~~~a-l~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 497 LGEVHHCKGELARALAMMQQT-EQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 455677899999999999887 432 11 11122445555667788999999999887665 2221 1 2334
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcccC--CCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHh
Q 038114 81 QNYILNMYGKCGSLEDARVVSDEMPQR--NVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 81 ~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 143 (170)
+..+-..+...|++++|...+.+.... ..........+..+.......|+.+.|...+.+...
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455556677789999999998876432 110012234455566677888999999998888754
No 217
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=93.52 E-value=1.1 Score=32.56 Aligned_cols=87 Identities=14% Similarity=0.039 Sum_probs=63.1
Q ss_pred HhhhcccCCHHHHHHHHHH-HHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc--
Q 038114 14 YNSQPIQNLYNEALVAFDF-LQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK-- 90 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~-m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-- 90 (170)
|.+++..++|.+++...-+ -.....++|.. .-..|-.|++.+++..+.++-....+..-.-+...|.++...|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 9999999999999985544 42234455554 445555677999999999999888765333344458888887776
Q ss_pred ---CCCHHHHHHHHh
Q 038114 91 ---CGSLEDARVVSD 102 (170)
Q Consensus 91 ---~~~~~~a~~~~~ 102 (170)
.|.+++|+++..
T Consensus 168 LlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 168 LLPLGHFSEAEELVV 182 (309)
T ss_pred HhccccHHHHHHHHh
Confidence 489999988763
No 218
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.51 E-value=3 Score=32.78 Aligned_cols=144 Identities=13% Similarity=0.050 Sum_probs=95.0
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchh-----hHHHHHHHhhc----ccchHHHHHHHHHHHhcCCCCCHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPS-----TYACLISTCSS----LRSLQLGRKVHDHILSSKSQPDVVLQNY 83 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-----~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 83 (170)
+++..+=.|+-+.+++.+.+..+..+++-... .|..++..+.. ....+.+.+++..+.+. -|+...|.-
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~ 271 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLF 271 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHH
Confidence 67777778999999999888734445543322 45555555443 45678899999999876 566665544
Q ss_pred HH-HHHHcCCCHHHHHHHHhhcccC--CCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHh
Q 038114 84 IL-NMYGKCGSLEDARVVSDEMPQR--NVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160 (170)
Q Consensus 84 li-~~~~~~~~~~~a~~~~~~m~~~--~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~ 160 (170)
.- +.+...|++++|.+.|+..... ... +.....+--+.-.+....+|++|.+.|..+.+.. ..+..+|..+..+|
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~-Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWK-QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHH-hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 43 3345579999999999965431 110 2233344445556677799999999999998864 22455555555444
No 219
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.50 E-value=0.72 Score=28.04 Aligned_cols=63 Identities=10% Similarity=0.031 Sum_probs=45.8
Q ss_pred HHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038114 94 LEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159 (170)
Q Consensus 94 ~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~ 159 (170)
.-+..+-+..+-..++ .|++....+.+.+|-|.+++..|.++|+-.+.+. .+....|..+++-
T Consensus 26 ~we~rrglN~l~~~Dl--VP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDL--VPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHHTTSSB-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc--CCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHHH
Confidence 4456777777788888 8999999999999999999999999998877652 2333377777653
No 220
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.49 E-value=0.14 Score=24.50 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=19.8
Q ss_pred hHHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 117 SWNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 117 ~~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
+|+.|-..|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777888888888888888888743
No 221
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.48 E-value=1.3 Score=28.51 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=24.7
Q ss_pred HHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCC
Q 038114 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146 (170)
Q Consensus 84 li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 146 (170)
.++...+.|.-++-.+++.++.. +- ++++...-.+-.+|.+.|+..++.+++.+-=+.|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~k-n~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKK-NE--EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH--------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhh-cc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34444444555555555554443 11 23434444444555555555555555554444443
No 222
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.34 E-value=2.1 Score=30.56 Aligned_cols=161 Identities=14% Similarity=0.064 Sum_probs=104.8
Q ss_pred cchhHhHHHhhhcccCCHHHHHHHHHHHHhhCCCCc-chhhHHHHHHHhhcccchHHHHHHHHHHHhc-CCCCCHHHHHH
Q 038114 6 KTQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRI-RPSTYACLISTCSSLRSLQLGRKVHDHILSS-KSQPDVVLQNY 83 (170)
Q Consensus 6 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ 83 (170)
|...-|+=...-.+.|++++|.+.|+.+..+....| ...+--.++-++-+.+++++|....++..+. +-.||. -|-.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~ 111 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAY 111 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHH
Confidence 444445545566789999999999999944443333 4557777888889999999999999998774 445543 5555
Q ss_pred HHHHHHc-------CCCHHHHHHHHhhcc-------cCCCCCCCChhhH------------HHHHHHHhCCCChHHHHHH
Q 038114 84 ILNMYGK-------CGSLEDARVVSDEMP-------QRNVIESPDLASW------------NAIIAGVASPSNANEAMSL 137 (170)
Q Consensus 84 li~~~~~-------~~~~~~a~~~~~~m~-------~~~~~~~p~~~~~------------~~li~~~~~~g~~~~a~~l 137 (170)
-|++++. .++...+..-|..++ .... .||...= ..+..-|.+.|.+..|..=
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y--a~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR 189 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY--APDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINR 189 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 5665553 244555555444443 2233 3443321 1233667889999999999
Q ss_pred HHHHHhC--CCCCCHhhHHHHHHHhcCCCccccC
Q 038114 138 FSEMRDR--ELIPDGLTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 138 ~~~m~~~--~~~p~~~t~~~ll~~~~~~g~~e~~ 169 (170)
+++|.+. .-.-.....-.+..+|-+.|..+++
T Consensus 190 ~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a 223 (254)
T COG4105 190 FEEVLENYPDTSAVREALARLEEAYYALGLTDEA 223 (254)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHhCChHHH
Confidence 9999887 1122333455666777777766554
No 223
>PRK15331 chaperone protein SicA; Provisional
Probab=93.31 E-value=1 Score=29.98 Aligned_cols=92 Identities=15% Similarity=0.054 Sum_probs=66.5
Q ss_pred HHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 038114 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91 (170)
Q Consensus 12 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 91 (170)
..-..+-+.|++++|..+|..+ ...+. .++.-+..|-.++-..++++.|...|......+. -|+..+=-.-.+|...
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L-~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l 118 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFL-CIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH-HHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHh
Confidence 3455667889999999999999 54332 2344455666666778999999999998766542 2233333345788899
Q ss_pred CCHHHHHHHHhhccc
Q 038114 92 GSLEDARVVSDEMPQ 106 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~ 106 (170)
|+.+.|...|....+
T Consensus 119 ~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 119 RKAAKARQCFELVNE 133 (165)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998775
No 224
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.21 E-value=1.5 Score=34.40 Aligned_cols=81 Identities=9% Similarity=0.120 Sum_probs=58.8
Q ss_pred HHHHHhhcccchHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHh
Q 038114 48 CLISTCSSLRSLQLGRKVHDHILSS-KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVA 126 (170)
Q Consensus 48 ~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~ 126 (170)
.+-.++-+.|+.++|.+.|.+|.+. ...-...+.-.||.++...+.+.++..++.+-.+-... +--..+|+..+..+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp-kSAti~YTaALLkaR 342 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP-KSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC-chHHHHHHHHHHHHH
Confidence 3445556789999999999999764 32334668899999999999999999999986543331 334567888775544
Q ss_pred CCC
Q 038114 127 SPS 129 (170)
Q Consensus 127 ~~g 129 (170)
..+
T Consensus 343 av~ 345 (539)
T PF04184_consen 343 AVG 345 (539)
T ss_pred hhc
Confidence 333
No 225
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.06 E-value=2.7 Score=30.93 Aligned_cols=119 Identities=8% Similarity=0.151 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHhhCCC--CcchhhHHHHHHHhhcccc----hHHHHHHHHHHHhcCCCCC-H-HHHHHHHHHHHcCCC
Q 038114 22 LYNEALVAFDFLQNNTNF--RIRPSTYACLISTCSSLRS----LQLGRKVHDHILSSKSQPD-V-VLQNYILNMYGKCGS 93 (170)
Q Consensus 22 ~~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~~~~~~-~-~~~~~li~~~~~~~~ 93 (170)
....+..+|+.|++.+.+ .++...+++++.. ..++ .+.++..|+.+.+.|+..+ . ...+.++........
T Consensus 118 ~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~ 195 (297)
T PF13170_consen 118 IIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQ 195 (297)
T ss_pred HHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccch
Confidence 355889999999555554 3455577777665 3333 4677788899988887665 2 333344333333222
Q ss_pred --HHHHHHHHhhcccCCCCCCCChhhHHHH-HHHHhCCCC---hHHHHHHHHHHHhC
Q 038114 94 --LEDARVVSDEMPQRNVIESPDLASWNAI-IAGVASPSN---ANEAMSLFSEMRDR 144 (170)
Q Consensus 94 --~~~a~~~~~~m~~~~~~~~p~~~~~~~l-i~~~~~~g~---~~~a~~l~~~m~~~ 144 (170)
...+.++++.+++.|+ ++....|..+ +-++...+. .+...++.+.+.+.
T Consensus 196 ~~v~r~~~l~~~l~~~~~--kik~~~yp~lGlLall~~~~~~~~~~i~ev~~~L~~~ 250 (297)
T PF13170_consen 196 EKVARVIELYNALKKNGV--KIKYMHYPTLGLLALLEDPEEKIVEEIKEVIDELKEQ 250 (297)
T ss_pred HHHHHHHHHHHHHHHcCC--ccccccccHHHHHHhcCCchHHHHHHHHHHHHHHhhC
Confidence 4578889999999999 8888888776 344444444 45555566666544
No 226
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.01 E-value=0.7 Score=31.13 Aligned_cols=68 Identities=10% Similarity=0.014 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCC
Q 038114 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145 (170)
Q Consensus 78 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 145 (170)
...+..+...|++.|+.+.|.+.|.++.+....+..-...+-.+|......+++..+.....+....-
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999998766223334557778888888999999999888776543
No 227
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.99 E-value=0.23 Score=23.71 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhc
Q 038114 80 LQNYILNMYGKCGSLEDARVVSDEM 104 (170)
Q Consensus 80 ~~~~li~~~~~~~~~~~a~~~~~~m 104 (170)
+|+.|-..|.+.|++++|.++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4678888999999999999999874
No 228
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.87 E-value=4.2 Score=32.67 Aligned_cols=138 Identities=16% Similarity=0.056 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHH--------HHHhcCCCCCHHHHHHHHHHHHcCCC
Q 038114 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHD--------HILSSKSQPDVVLQNYILNMYGKCGS 93 (170)
Q Consensus 22 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~--------~m~~~~~~~~~~~~~~li~~~~~~~~ 93 (170)
.+..+..++... ......-...+.-+.+......|+++.|.+++. .+.+.+..|. +-..++..|.+.++
T Consensus 356 ~~~ka~e~L~~~-~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~ 432 (652)
T KOG2376|consen 356 KHKKAIELLLQF-ADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKD 432 (652)
T ss_pred HHhhhHHHHHHH-hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccC
Confidence 456666666666 333222234456666777788899999998888 5555555554 44556666666666
Q ss_pred HHHHHHHHhhcccCCCCCCCC----hhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCC
Q 038114 94 LEDARVVSDEMPQRNVIESPD----LASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP 163 (170)
Q Consensus 94 ~~~a~~~~~~m~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~ 163 (170)
-+.|..++.+....-....+. ..++.-...-=-+.|+-++|..+++++.+.+ .+|..+...++.+|++.
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL 505 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc
Confidence 555666555432110000111 1233333344456689999999999988754 56888888888888764
No 229
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=92.54 E-value=2.4 Score=29.10 Aligned_cols=127 Identities=10% Similarity=0.128 Sum_probs=86.8
Q ss_pred HHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcC---CCCCHHHHHHHHHHH
Q 038114 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK---SQPDVVLQNYILNMY 88 (170)
Q Consensus 12 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~ 88 (170)
.|-.++.+.|+..+|...|++. ...-+.-|....-.+-++-...+++..+...++.+-+.. -.||. --.+-+.|
T Consensus 94 rLa~al~elGr~~EA~~hy~qa-lsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~Ll~aR~l 170 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQA-LSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HLLFARTL 170 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHH-hccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hHHHHHHH
Confidence 3678888889999999999888 766677788888888888888888888888888887753 34443 33455677
Q ss_pred HcCCCHHHHHHHHhhcccCCCCCCCCh-hhHHHHHHHHhCCC-ChHHHHHHHHHHHh
Q 038114 89 GKCGSLEDARVVSDEMPQRNVIESPDL-ASWNAIIAGVASPS-NANEAMSLFSEMRD 143 (170)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~~~~~~p~~-~~~~~li~~~~~~g-~~~~a~~l~~~m~~ 143 (170)
...|.+.+|+.-|+.....-. .|.. .-|..++..-.+.. .-.++..+++...+
T Consensus 171 aa~g~~a~Aesafe~a~~~yp--g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 171 AAQGKYADAESAFEVAISYYP--GPQARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred HhcCCchhHHHHHHHHHHhCC--CHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 788888888888887765432 2332 33555555544332 23444556665544
No 230
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.42 E-value=1.9 Score=28.00 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=57.5
Q ss_pred hhHHHHHHHhhcccchHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHH
Q 038114 44 STYACLISTCSSLRSLQLGRKVHDHILSSK--SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121 (170)
Q Consensus 44 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l 121 (170)
..|..-..+ .+.|+++.|.+.|+.+...- -.-.....--|+.+|.+.+++++|...++...+.... -|+ +-|-..
T Consensus 12 ~ly~~a~~~-l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~-hp~-vdYa~Y 88 (142)
T PF13512_consen 12 ELYQEAQEA-LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT-HPN-VDYAYY 88 (142)
T ss_pred HHHHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CCC-ccHHHH
Confidence 344444444 35688999999999998751 1233566777889999999999999999998876552 333 455555
Q ss_pred HHHHhCCC
Q 038114 122 IAGVASPS 129 (170)
Q Consensus 122 i~~~~~~g 129 (170)
+.|++...
T Consensus 89 ~~gL~~~~ 96 (142)
T PF13512_consen 89 MRGLSYYE 96 (142)
T ss_pred HHHHHHHH
Confidence 55554433
No 231
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.29 E-value=1.5 Score=31.67 Aligned_cols=97 Identities=10% Similarity=0.072 Sum_probs=75.8
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHH---
Q 038114 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII--- 122 (170)
Q Consensus 46 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li--- 122 (170)
-++++++.--.+++.-...++++..+...+.++...+.|.+.-.+.|+.+.|...|+...+..- +.|..+++.+.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~--kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ--KLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh--hhhccchhHHHHhh
Confidence 3556666667788888899999999987788899999999999999999999999997765544 56666666655
Q ss_pred --HHHhCCCChHHHHHHHHHHHhC
Q 038114 123 --AGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 123 --~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
..|.-.+++..|...+.++...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~ 281 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRM 281 (366)
T ss_pred hhhheecccchHHHHHHHhhcccc
Confidence 3455567888888888777543
No 232
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.03 E-value=3.8 Score=31.63 Aligned_cols=122 Identities=13% Similarity=0.107 Sum_probs=71.1
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCC-cchhhHHHHHHHhhcccchHHHHHHHHHHHhc--------------------
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFR-IRPSTYACLISTCSSLRSLQLGRKVHDHILSS-------------------- 72 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------------------- 72 (170)
-..+.+.+++++|.-.|+.. .. .. -+...|.-|+++|...|++.+|.-.-++..+.
T Consensus 341 G~lL~~~~R~~~A~IaFR~A-q~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp 417 (564)
T KOG1174|consen 341 GRLLIALERHTQAVIAFRTA-QM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDP 417 (564)
T ss_pred cHHHHhccchHHHHHHHHHH-Hh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCc
Confidence 34556667777777777666 32 33 35557777777777777776665444433221
Q ss_pred ------------C--CCCC-HHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHH
Q 038114 73 ------------K--SQPD-VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137 (170)
Q Consensus 73 ------------~--~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l 137 (170)
+ +.|+ ...-+.+-..+...|..+.+..+++.-... .||....+.+-..+...+.+.+|++.
T Consensus 418 ~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~----~~D~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 418 RMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII----FPDVNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred hhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh----ccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 0 1222 223334444455666666666666654432 56667777777777777777777766
Q ss_pred HHHHH
Q 038114 138 FSEMR 142 (170)
Q Consensus 138 ~~~m~ 142 (170)
|..-.
T Consensus 494 y~~AL 498 (564)
T KOG1174|consen 494 YYKAL 498 (564)
T ss_pred HHHHH
Confidence 65443
No 233
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.62 E-value=0.54 Score=23.50 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=6.3
Q ss_pred HHHcCCCHHHHHHHHhh
Q 038114 87 MYGKCGSLEDARVVSDE 103 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~ 103 (170)
.|.+.|++++|.++|+.
T Consensus 10 ~~~~~G~~~~A~~~~~~ 26 (44)
T PF13428_consen 10 AYRRLGQPDEAERLLRR 26 (44)
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 33333333333333333
No 234
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.50 E-value=0.99 Score=22.48 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=16.0
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhc
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILSS 72 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 72 (170)
++..+-.++.+.|++++|.++|+...+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555556666666666666666554
No 235
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.48 E-value=5.9 Score=31.35 Aligned_cols=141 Identities=11% Similarity=0.023 Sum_probs=88.0
Q ss_pred hhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHH-------------------------HHHHhhcccchHHHHHHHHHH
Q 038114 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYAC-------------------------LISTCSSLRSLQLGRKVHDHI 69 (170)
Q Consensus 15 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~-------------------------li~~~~~~~~~~~a~~~~~~m 69 (170)
.+|.+.++++.++..|.+. ......|+..+-.. --+.+-+.|++..|...|.++
T Consensus 306 ~a~~k~~~~~~ai~~~~ka-Lte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKA-LTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hhhhhHHhHHHHHHHHHHH-hhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3566667777777777776 44444443332111 133445668899999999998
Q ss_pred HhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCC
Q 038114 70 LSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD 149 (170)
Q Consensus 70 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~ 149 (170)
.+.. +-|...|+..--+|.+.|.+..|++=.+.-.+.+. +....|.-=..++-...++++|++.|.+-.+.. |+
T Consensus 385 Ikr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p---~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~ 458 (539)
T KOG0548|consen 385 IKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP---NFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PS 458 (539)
T ss_pred HhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ch
Confidence 8876 55788999999999999999988887766665433 222223332333333447777887777666543 55
Q ss_pred HhhHHHHHHHhcC
Q 038114 150 GLTVRSLLCACTS 162 (170)
Q Consensus 150 ~~t~~~ll~~~~~ 162 (170)
..-+.--++-|..
T Consensus 459 ~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 459 NAEAIDGYRRCVE 471 (539)
T ss_pred hHHHHHHHHHHHH
Confidence 5555544444443
No 236
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.92 E-value=0.6 Score=22.54 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=19.7
Q ss_pred hhHHHHHHHHhCCCChHHHHHHHHHHHh
Q 038114 116 ASWNAIIAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 116 ~~~~~li~~~~~~g~~~~a~~l~~~m~~ 143 (170)
.+++.+-..|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677777777777888888877776653
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.90 E-value=1.2 Score=34.74 Aligned_cols=103 Identities=11% Similarity=0.038 Sum_probs=55.3
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
+++-+-+.|.++.|+++-..- . .-+....+.|+++.|.++.++. .+...|..|-+...+.|
T Consensus 301 i~~fL~~~G~~e~AL~~~~D~-~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 301 IARFLEKKGYPELALQFVTDP-D------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHTT-HHHHHHHSS-H-H------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHhhcCCh-H------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcC
Confidence 677777778888887764433 1 1223334556666665544332 25557777777777777
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCC
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 145 (170)
+++-|++.|.+.++ |..++--|...|+.++...+.+.-...|
T Consensus 362 ~~~lAe~c~~k~~d-----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 362 NIELAEECYQKAKD-----------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp BHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhhcC-----------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 77777777766542 3334444444555555555544444333
No 238
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.62 E-value=0.69 Score=22.31 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 038114 78 VVLQNYILNMYGKCGSLEDARVVSDEMP 105 (170)
Q Consensus 78 ~~~~~~li~~~~~~~~~~~a~~~~~~m~ 105 (170)
..+++.|-..|...|++++|.+++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 4578899999999999999999998754
No 239
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.47 E-value=5 Score=28.77 Aligned_cols=123 Identities=10% Similarity=-0.016 Sum_probs=71.2
Q ss_pred HHhhhcccCCHHHHHHHHHHHHh-hCCCCcchh--hHHHH--------------------HHHhhcccchHHHHHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQN-NTNFRIRPS--TYACL--------------------ISTCSSLRSLQLGRKVHDHI 69 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~-~~~~~p~~~--~~~~l--------------------i~~~~~~~~~~~a~~~~~~m 69 (170)
-...|.++|.++-|-..+++.-+ ..++.|+.. .|.-- -+.+.+...++++-..|..-
T Consensus 97 As~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 46677777777766666655411 234555443 33333 33344444444443333222
Q ss_pred Hh----cCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHhh---cccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHH
Q 038114 70 LS----SKSQPDV-VLQNYILNMYGKCGSLEDARVVSDE---MPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138 (170)
Q Consensus 70 ~~----~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~---m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~ 138 (170)
.. ..-.+++ ..|-..|-.|.-..++..|+++|++ .....- .-+..+...||.+|-. |+.+++..++
T Consensus 177 ~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~--sed~r~lenLL~ayd~-gD~E~~~kvl 250 (308)
T KOG1585|consen 177 GVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLK--SEDSRSLENLLTAYDE-GDIEEIKKVL 250 (308)
T ss_pred hhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccC--hHHHHHHHHHHHHhcc-CCHHHHHHHH
Confidence 11 0112222 3455566677777899999999998 444444 5677899999999866 7777776543
No 240
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.87 E-value=4.9 Score=27.73 Aligned_cols=78 Identities=10% Similarity=-0.041 Sum_probs=51.5
Q ss_pred hcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcc---cCCCCCCCChhhHHHHHHHHhCCCC
Q 038114 54 SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP---QRNVIESPDLASWNAIIAGVASPSN 130 (170)
Q Consensus 54 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~p~~~~~~~li~~~~~~g~ 130 (170)
.+.| -+.|.+.|-++...+..-++...-.|-..|. ..+.+++..++-... ..+- .+|+..+..|...+-+.|+
T Consensus 118 sr~~-d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~--~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 118 SRFG-DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDD--NFNPEILKSLASIYQKLKN 193 (203)
T ss_pred hccC-cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHhcc
Confidence 3444 4567777777777776666666666666665 456777777766443 3333 5677778888888888887
Q ss_pred hHHHH
Q 038114 131 ANEAM 135 (170)
Q Consensus 131 ~~~a~ 135 (170)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 77764
No 241
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.83 E-value=3.1 Score=26.81 Aligned_cols=85 Identities=9% Similarity=0.044 Sum_probs=57.5
Q ss_pred cccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 038114 18 PIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97 (170)
Q Consensus 18 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 97 (170)
...|+......-+-.+ ..+...+...+......|+-+.-.+++.++.+.+ .+++...--+-.+|.+-|+..++
T Consensus 67 s~C~NlKrVi~C~~~~------n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~ 139 (161)
T PF09205_consen 67 SKCGNLKRVIECYAKR------NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREA 139 (161)
T ss_dssp GG-S-THHHHHHHHHT------T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHH
T ss_pred hhhcchHHHHHHHHHh------cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhH
Confidence 4556677777766665 3455677888888888899888888988887643 67777778888899999999999
Q ss_pred HHHHhhcccCCC
Q 038114 98 RVVSDEMPQRNV 109 (170)
Q Consensus 98 ~~~~~~m~~~~~ 109 (170)
.+++.+.-+.|+
T Consensus 140 ~ell~~ACekG~ 151 (161)
T PF09205_consen 140 NELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-
T ss_pred HHHHHHHHHhch
Confidence 999888877776
No 242
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=89.73 E-value=1.6 Score=22.44 Aligned_cols=34 Identities=9% Similarity=0.096 Sum_probs=25.3
Q ss_pred hCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038114 126 ASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159 (170)
Q Consensus 126 ~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~ 159 (170)
.+.|-.+++..++++|.+.|+..+...|..+++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 4557777777888888888888777777777654
No 243
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.69 E-value=3.2 Score=29.22 Aligned_cols=79 Identities=15% Similarity=0.100 Sum_probs=51.1
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHH
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~ 124 (170)
|.+.-++...+.+.+.++.....+-++.+ +-|...-..+++.||-.|+|++|..=++-.-.....-.+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44555666677778888888777776664 44566777788888888888888765553322111003555677777754
No 244
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.52 E-value=7.4 Score=30.84 Aligned_cols=104 Identities=13% Similarity=0.005 Sum_probs=79.6
Q ss_pred hhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCC
Q 038114 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD-VVLQNYILNMYGKCGS 93 (170)
Q Consensus 15 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~ 93 (170)
.+....|+++.|...|-.. ..... +|...|+--..+|++.|++++|.+=-.+-++- .|+ +.-|+..-.++.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~a-i~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEA-IMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHH-HccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 3557889999999999887 54443 48888999999999999999888766666654 444 7789999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCChhhHHHHHHHH
Q 038114 94 LEDARVVSDEMPQRNVIESPDLASWNAIIAGV 125 (170)
Q Consensus 94 ~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~ 125 (170)
+++|..-|.+-.+... -+...++-+..++
T Consensus 86 ~~eA~~ay~~GL~~d~---~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDP---SNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHHhhcCC---chHHHHHhHHHhh
Confidence 9999999997655432 3445556565555
No 245
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=89.44 E-value=2.4 Score=28.80 Aligned_cols=31 Identities=19% Similarity=0.116 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 038114 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105 (170)
Q Consensus 75 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 105 (170)
.|++.+|..++..+...|+.++|.++..++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555555544443
No 246
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.43 E-value=8 Score=29.56 Aligned_cols=125 Identities=10% Similarity=0.017 Sum_probs=85.5
Q ss_pred HhhhcccCCHHHHHHHHHHHHhh----CCCCc---------chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHH
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNN----TNFRI---------RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL 80 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~----~~~~p---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 80 (170)
-..|.+.|++..|..-|+..... .+..+ -...+.-+.-++.+.+++..|...-......+ +.|+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 34678889999999988874221 11222 12245566667788999999999988888875 456665
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCC-C-ChHHHHHHHHHHHh
Q 038114 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP-S-NANEAMSLFSEMRD 143 (170)
Q Consensus 81 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~-g-~~~~a~~l~~~m~~ 143 (170)
.=.--.+|...|+++.|...|+.+.+. .|+-..-+.=|..|.+. . ..++...+|..|-.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~----~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL----EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555667888889999999999999876 55555555555554332 2 34445677887753
No 247
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.24 E-value=6.5 Score=28.32 Aligned_cols=97 Identities=10% Similarity=0.109 Sum_probs=54.5
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHH
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILSSK----SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNA 120 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ 120 (170)
.|+.-+..+- .|++..|...|...++.. ..|+. +==|-.++...|++++|-.+|..+.+.-..++--+.+.--
T Consensus 144 ~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 4666665543 345777777777776642 22222 2235666777777777777777665432210111233444
Q ss_pred HHHHHhCCCChHHHHHHHHHHHhC
Q 038114 121 IIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 121 li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
+-....+.|+.++|-.+|++..+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 445556667777777777766543
No 248
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=89.04 E-value=9.6 Score=31.64 Aligned_cols=135 Identities=13% Similarity=0.138 Sum_probs=88.1
Q ss_pred ccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhh---cccchHHH-------------------H----HHHHHHHhc
Q 038114 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCS---SLRSLQLG-------------------R----KVHDHILSS 72 (170)
Q Consensus 19 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~---~~~~~~~a-------------------~----~~~~~m~~~ 72 (170)
..+...+++.-+... ...++..+..++..+...+. ..++.+++ . -.+.++...
T Consensus 239 ~~~~~~~~i~s~~~~-l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~ 317 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRA-LLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLK 317 (799)
T ss_pred CCCCchHHHHhhhHH-hhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHh
Confidence 445566667767666 66666666666666544432 23334433 1 122333334
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhh
Q 038114 73 KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152 (170)
Q Consensus 73 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t 152 (170)
.+..|+.+|..|--+..++|+++.+-+.|++....-+ -....|..+-..+...|.-..|..++++-....-.|+..+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~---~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF---GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 5667889999999999999999999999998764433 2336788888888888998999999887665443454444
Q ss_pred HHHHH
Q 038114 153 VRSLL 157 (170)
Q Consensus 153 ~~~ll 157 (170)
--.+.
T Consensus 395 ~~Lma 399 (799)
T KOG4162|consen 395 VLLMA 399 (799)
T ss_pred HHHHH
Confidence 33333
No 249
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.96 E-value=3.3 Score=32.27 Aligned_cols=107 Identities=11% Similarity=0.097 Sum_probs=66.1
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS 93 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 93 (170)
.....-.++++.+.+....-..-..+ | ..-.+.+++.+.+.|..+.|+++-..-. .-.....++|+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 45556677888877766522011222 2 4457788888888888888877644321 23456678888
Q ss_pred HHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 94 LEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 94 ~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
++.|.++.++. ++...|..|-....+.|+++.|++.|.+..
T Consensus 334 L~~A~~~a~~~--------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 334 LDIALEIAKEL--------DDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHCCCC--------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHHHHHHHhc--------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 88888887763 345688888888888888888888887665
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=88.86 E-value=10 Score=29.92 Aligned_cols=117 Identities=11% Similarity=-0.028 Sum_probs=80.4
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHH-hhcccchHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHcCCCHH
Q 038114 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLIST-CSSLRSLQLGRKVHDHILSSK---SQPDVVLQNYILNMYGKCGSLE 95 (170)
Q Consensus 20 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~~~~~ 95 (170)
....+.|.++++.+ ... -|+...|...-.- +...|++++|.+.|+...... .+.....+--+.-.+.-.++|+
T Consensus 246 ~~~~~~a~~lL~~~-~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEM-LKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHH-HHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 56788899999999 443 3777666544433 456799999999999765321 1333445555666678889999
Q ss_pred HHHHHHhhcccCCCCCCCChhhHHHHHHHH-hCCCCh-------HHHHHHHHHHH
Q 038114 96 DARVVSDEMPQRNVIESPDLASWNAIIAGV-ASPSNA-------NEAMSLFSEMR 142 (170)
Q Consensus 96 ~a~~~~~~m~~~~~~~~p~~~~~~~li~~~-~~~g~~-------~~a~~l~~~m~ 142 (170)
+|.+.|..+.+.+- .+..+|.-+..+| ...|+. ++|.++|.+..
T Consensus 323 ~A~~~f~~L~~~s~---WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 323 EAAEYFLRLLKESK---WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHhccc---cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 99999999987433 4555566554333 445666 88888888774
No 251
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.72 E-value=0.98 Score=19.74 Aligned_cols=20 Identities=10% Similarity=0.039 Sum_probs=10.6
Q ss_pred HHHHHHHcCCCHHHHHHHHh
Q 038114 83 YILNMYGKCGSLEDARVVSD 102 (170)
Q Consensus 83 ~li~~~~~~~~~~~a~~~~~ 102 (170)
.+-..+...|++++|+++++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555543
No 252
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=88.72 E-value=2.9 Score=28.44 Aligned_cols=56 Identities=9% Similarity=-0.025 Sum_probs=48.2
Q ss_pred hcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhc
Q 038114 17 QPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS 72 (170)
Q Consensus 17 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 72 (170)
.....+.+......+.+++.....|++.+|..++.++...|+.++|.++..++...
T Consensus 118 ~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 118 ARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34777777788888887666778999999999999999999999999999999864
No 253
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=88.67 E-value=10 Score=29.75 Aligned_cols=143 Identities=9% Similarity=-0.017 Sum_probs=91.0
Q ss_pred hcccCCHHHHHHHHHHHHhhCCCCc---c-hhhHHHHHHHhhcccchHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHcC
Q 038114 17 QPIQNLYNEALVAFDFLQNNTNFRI---R-PSTYACLISTCSSLRSLQLGRKVHDHILSS-KSQPDVVLQNYILNMYGKC 91 (170)
Q Consensus 17 ~~~~~~~~~a~~~~~~m~~~~~~~p---~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~ 91 (170)
+-+.+++.+|..+|.++-.+..-.| . ...-+.+|+||--. +.+..........+. |..+-...+-.|. +-+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~--~Y~~ 92 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALV--AYKQ 92 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHH--HHHh
Confidence 3567899999999988833322222 2 22345777777654 577777777777653 4333333333332 2366
Q ss_pred CCHHHHHHHHhhcccC--CCC-C---------CCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC----CCCCCHhhHHH
Q 038114 92 GSLEDARVVSDEMPQR--NVI-E---------SPDLASWNAIIAGVASPSNANEAMSLFSEMRDR----ELIPDGLTVRS 155 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~--~~~-~---------~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~p~~~t~~~ 155 (170)
+.+..|.+.+...... +.. + -+|..-=++.+.++...|++.++..+++.|... ....+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 7889998888776544 320 0 112222356678889999999999998888765 34489999998
Q ss_pred HHHHhcC
Q 038114 156 LLCACTS 162 (170)
Q Consensus 156 ll~~~~~ 162 (170)
++-.+++
T Consensus 173 ~vlmlsr 179 (549)
T PF07079_consen 173 AVLMLSR 179 (549)
T ss_pred HHHHHhH
Confidence 7666654
No 254
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.24 E-value=12 Score=30.03 Aligned_cols=84 Identities=18% Similarity=0.166 Sum_probs=63.0
Q ss_pred chHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHH
Q 038114 58 SLQLGRKVHDHILS-SKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136 (170)
Q Consensus 58 ~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 136 (170)
.+....++|-++.. .+..+|+.+++.|--.|--.|.+++|.+.|+....... -|...||-|-..++...+.++|+.
T Consensus 409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~P---nd~~lWNRLGAtLAN~~~s~EAIs 485 (579)
T KOG1125|consen 409 HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKP---NDYLLWNRLGATLANGNRSEEAIS 485 (579)
T ss_pred HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCC---chHHHHHHhhHHhcCCcccHHHHH
Confidence 34455555555533 34457778888888888888999999999998765533 467789999999999999999999
Q ss_pred HHHHHHhC
Q 038114 137 LFSEMRDR 144 (170)
Q Consensus 137 l~~~m~~~ 144 (170)
-+.+-.+.
T Consensus 486 AY~rALqL 493 (579)
T KOG1125|consen 486 AYNRALQL 493 (579)
T ss_pred HHHHHHhc
Confidence 99877643
No 255
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.16 E-value=6.7 Score=27.09 Aligned_cols=78 Identities=9% Similarity=-0.000 Sum_probs=57.6
Q ss_pred HHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC---CCCCCHhhHHHHHHHhcCCC
Q 038114 88 YGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR---ELIPDGLTVRSLLCACTSPS 164 (170)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~p~~~t~~~ll~~~~~~g 164 (170)
..+.|+ +.|.+.|-.+...+. --++..--.+..-|. ..+.+++..++....+. +-.+|...+.+|...+-+.|
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~--l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPE--LETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCC--CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 445555 678888888887776 445555555555555 68899999988877653 44899999999999999999
Q ss_pred ccccC
Q 038114 165 NVLYL 169 (170)
Q Consensus 165 ~~e~~ 169 (170)
+.+.+
T Consensus 193 ~~e~A 197 (203)
T PF11207_consen 193 NYEQA 197 (203)
T ss_pred chhhh
Confidence 88754
No 256
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=88.08 E-value=7 Score=33.62 Aligned_cols=61 Identities=15% Similarity=0.083 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHH--HHhCCCChHHHHHHHHHHH
Q 038114 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIA--GVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 77 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~--~~~~~g~~~~a~~l~~~m~ 142 (170)
|...|..+..+|.++|++..|.++|.+.... +|+ .+|...-. .-|..|.+.+|...+....
T Consensus 595 D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L----rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 595 DYNLWLGLGEAYPESGRYSHALKVFTKASLL----RPL-SKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred hHHHHHHHHHHHHhcCceehHHHhhhhhHhc----CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5677778888888888888888888776543 333 34444322 2355577777776666553
No 257
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.99 E-value=8.1 Score=27.86 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=73.0
Q ss_pred HhHHHhhhcccCCHHHHHHHHHHHHhhCCC--CcchhhHHHHHHHhhcccchHHHHHHHHHHHhc-CCCCC-HHHHHHHH
Q 038114 10 RFTFYNSQPIQNLYNEALVAFDFLQNNTNF--RIRPSTYACLISTCSSLRSLQLGRKVHDHILSS-KSQPD-VVLQNYIL 85 (170)
Q Consensus 10 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~-~~~~~~li 85 (170)
.|+.--.+.+.|++..|...|... ..... .-.+..+-.|-.++...|++++|..+|..+.+. +-.|- +...=-|-
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~f-i~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAF-IKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 577666677888899999999887 44321 123335678899999999999999999999874 22222 34555566
Q ss_pred HHHHcCCCHHHHHHHHhhcccC
Q 038114 86 NMYGKCGSLEDARVVSDEMPQR 107 (170)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~ 107 (170)
....+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6788899999999999998765
No 258
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=87.64 E-value=4.6 Score=24.82 Aligned_cols=27 Identities=11% Similarity=0.277 Sum_probs=19.7
Q ss_pred hHHHHHHHHhCCCChHHHHHHHHHHHh
Q 038114 117 SWNAIIAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 117 ~~~~li~~~~~~g~~~~a~~l~~~m~~ 143 (170)
-|..++.-|-..|..++|.+++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777777777777777777777766
No 259
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.58 E-value=5.1 Score=33.13 Aligned_cols=105 Identities=8% Similarity=-0.060 Sum_probs=64.3
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
-+.-+...|+-.+|.++-.+. -.||-..|-.=+.+++..+++++-+++-+..+ .+.-|-=++.+|.+.|
T Consensus 690 Tv~~li~~g~~k~a~ql~~~F-----kipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 690 TVTTLILIGQNKRAEQLKSDF-----KIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQG 758 (829)
T ss_pred HHHHHHHccchHHHHHHHHhc-----CCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcc
Confidence 355666667777776665555 34777777777777777777775544443332 1334555667777777
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHH
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~ 139 (170)
+.++|.+.+...... . -...+|.+.|++.+|.++--
T Consensus 759 n~~EA~KYiprv~~l--------~---ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 759 NKDEAKKYIPRVGGL--------Q---EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred cHHHHhhhhhccCCh--------H---HHHHHHHHhccHHHHHHHHH
Confidence 777777776653321 1 45566777777777765543
No 260
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=87.27 E-value=2 Score=22.07 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=15.3
Q ss_pred cccCCHHHHHHHHHHHHhhCCCCcchhhHHHHH
Q 038114 18 PIQNLYNEALVAFDFLQNNTNFRIRPSTYACLI 50 (170)
Q Consensus 18 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li 50 (170)
-+.|..+++..+++.| ++.|+..++..|..++
T Consensus 13 k~~GlI~~~~~~l~~l-~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRL-QQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHH-HHcCcccCHHHHHHHH
Confidence 3444444444555555 5555544444444444
No 261
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.17 E-value=6.5 Score=32.54 Aligned_cols=102 Identities=10% Similarity=0.050 Sum_probs=77.9
Q ss_pred HHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccC
Q 038114 28 VAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQR 107 (170)
Q Consensus 28 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 107 (170)
++.+.++.+.|..-.--+.+--+.-+.-.|+...|.++-.+.+ .||...|-.=+.+++..++|++-++.-..++.
T Consensus 669 ~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks- 743 (829)
T KOG2280|consen 669 KLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS- 743 (829)
T ss_pred HHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-
Confidence 3444443344433333455555666667788899988888886 88999999999999999999998888777654
Q ss_pred CCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHH
Q 038114 108 NVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141 (170)
Q Consensus 108 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 141 (170)
+.-|--+...|.+.|+.++|..++-..
T Consensus 744 -------PIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 744 -------PIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred -------CCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 257888999999999999999988754
No 262
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=87.10 E-value=2.5 Score=26.87 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 038114 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106 (170)
Q Consensus 60 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 106 (170)
.+..+.++.+....+.|++.+...-++++-+.+++..|.++|+..+.
T Consensus 66 wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 66 WEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34445555555666666666666666666666666666666666654
No 263
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=86.83 E-value=8.1 Score=26.63 Aligned_cols=108 Identities=10% Similarity=-0.034 Sum_probs=84.3
Q ss_pred hCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCCh
Q 038114 36 NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDL 115 (170)
Q Consensus 36 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~ 115 (170)
.-...|+...--.|-.+..+.|+..+|...|.+...--+--|....-.+-++....+++..|...++++-+.+.. .-++
T Consensus 82 ~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa-~r~p 160 (251)
T COG4700 82 ELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA-FRSP 160 (251)
T ss_pred HHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc-cCCC
Confidence 334567777778889999999999999999999876556667888888889999999999999999987654321 1222
Q ss_pred hhHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 038114 116 ASWNAIIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 116 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
.+.-.+-..+.-.|..++|+.-|+...+.
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 34445667888889999999988887755
No 264
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=86.67 E-value=12 Score=28.51 Aligned_cols=80 Identities=10% Similarity=0.070 Sum_probs=55.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcccCCCCC-CCChhhHHHHHHHHhC---CCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 038114 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIE-SPDLASWNAIIAGVAS---PSNANEAMSLFSEMRDRELIPDGLTVRSLL 157 (170)
Q Consensus 82 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~p~~~~~~~li~~~~~---~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll 157 (170)
-.++-+|-...+++...++++.+....... .-....=-...-++.| .|+.++|.+++.......-.++..||..+-
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 355556888899999999999998652200 1111111233455667 899999999999977777778888888777
Q ss_pred HHhc
Q 038114 158 CACT 161 (170)
Q Consensus 158 ~~~~ 161 (170)
+.|-
T Consensus 225 RIyK 228 (374)
T PF13281_consen 225 RIYK 228 (374)
T ss_pred HHHH
Confidence 6663
No 265
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=86.39 E-value=12 Score=28.59 Aligned_cols=104 Identities=12% Similarity=0.048 Sum_probs=71.6
Q ss_pred HhhcccchHHHHHHHHHHHhc-----CC---------CCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhh
Q 038114 52 TCSSLRSLQLGRKVHDHILSS-----KS---------QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117 (170)
Q Consensus 52 ~~~~~~~~~~a~~~~~~m~~~-----~~---------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~ 117 (170)
.+.+.|++..|..-|+..... +. .+-..+++.|.-+|.+.+++..|.+........+. +|+-.
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~---~N~KA 293 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP---NNVKA 293 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC---CchhH
Confidence 456778888888877764432 11 22345788888899999999999999987766544 33333
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHh
Q 038114 118 WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160 (170)
Q Consensus 118 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~ 160 (170)
.=-=-.+|...|+++.|...|+.+.+ +.|+-.....=|..|
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 33334677888999999999998874 466666555544443
No 266
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=86.27 E-value=6.7 Score=30.67 Aligned_cols=111 Identities=8% Similarity=0.043 Sum_probs=72.5
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHH--hhcccchHHHHHHHHHHHhc--CC------------CC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLIST--CSSLRSLQLGRKVHDHILSS--KS------------QP 76 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~--~~------------~~ 76 (170)
++++|..+ +.+.....+...++..|-. .|-.+..+ +.+.++++.|.+.+....+. +. .+
T Consensus 52 ilnAffl~-nld~Me~~l~~l~~~~~~s----~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~ 126 (549)
T PF07079_consen 52 ILNAFFLN-NLDLMEKQLMELRQQFGKS----AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFS 126 (549)
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhh
Confidence 56777654 3555555555553444433 34444444 34678899999988887765 32 23
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCC--CCCChhhHHHHHHHHhCC
Q 038114 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI--ESPDLASWNAIIAGVASP 128 (170)
Q Consensus 77 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~p~~~~~~~li~~~~~~ 128 (170)
|...=++.+.++...|++.++..+++.|...=+. ...+..+||-++-.+++.
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 4455567788899999999999999888755440 037889999876666553
No 267
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=86.09 E-value=13 Score=28.34 Aligned_cols=129 Identities=12% Similarity=0.049 Sum_probs=80.5
Q ss_pred Hhhhcc---cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhc---------ccchHHHHHHHHHHHhcCCCCCHH--
Q 038114 14 YNSQPI---QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSS---------LRSLQLGRKVHDHILSSKSQPDVV-- 79 (170)
Q Consensus 14 i~~~~~---~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~-- 79 (170)
.-++.+ .|+.++|++++..+ ....-.+++.+|+.+-+.|-+ ....+.|...|.+--+. .||..
T Consensus 186 afALnRrn~~gdre~Al~il~~~-l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~G 262 (374)
T PF13281_consen 186 AFALNRRNKPGDREKALQILLPV-LESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSG 262 (374)
T ss_pred HHHHhhcccCCCHHHHHHHHHHH-HhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--Cccccch
Confidence 455566 89999999999996 566667888899888777632 23466777777655443 34433
Q ss_pred -HHHHHHHHHHcCC-CHHHHHHHH---hh-cccCCCC-CCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCC
Q 038114 80 -LQNYILNMYGKCG-SLEDARVVS---DE-MPQRNVI-ESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145 (170)
Q Consensus 80 -~~~~li~~~~~~~-~~~~a~~~~---~~-m~~~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 145 (170)
.+.+|+...+... .-.+..++- .. ..+.|.. ...|---+.+++.++.-.|+.++|.+..+.|.+..
T Consensus 263 IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 263 INAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2333433333211 122333333 22 2223321 13444556778899999999999999999998663
No 268
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.82 E-value=1.5 Score=20.61 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHcCCCHHHHH
Q 038114 77 DVVLQNYILNMYGKCGSLEDAR 98 (170)
Q Consensus 77 ~~~~~~~li~~~~~~~~~~~a~ 98 (170)
++..|+.+-..|...|++++|.
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4666666666666666666654
No 269
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=85.81 E-value=7.9 Score=31.82 Aligned_cols=92 Identities=9% Similarity=0.146 Sum_probs=66.4
Q ss_pred chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChh-----
Q 038114 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLA----- 116 (170)
Q Consensus 42 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~----- 116 (170)
+..+...+-.-+.+...+..|.++|..|-+. ..++......++|++|..+-+...+. .||+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~----~~dVy~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF----KDDVYMPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc----cccccchHHH
Confidence 3445555555566677788888888887532 35678888999999999999877653 34432
Q ss_pred ------hHHHHHHHHhCCCChHHHHHHHHHHHhCCC
Q 038114 117 ------SWNAIIAGVASPSNANEAMSLFSEMRDREL 146 (170)
Q Consensus 117 ------~~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 146 (170)
-|.-.-++|-++|+-.+|.++++++....+
T Consensus 813 wLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred HhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 244555888999999999999999876544
No 270
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=85.67 E-value=11 Score=29.86 Aligned_cols=76 Identities=11% Similarity=-0.097 Sum_probs=54.4
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCC-cchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFR-IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD-VVLQNYILNMYG 89 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~ 89 (170)
+-.++-+.|+.++|.+.|.+| .+.... -+......||.++-..+.+.++..++....+...+.+ ...|+..+-.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdL-lke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDL-LKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHH-HhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 344455679999999999998 543322 2344778899999999999999999999865433322 567887664433
No 271
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=85.61 E-value=15 Score=31.81 Aligned_cols=50 Identities=12% Similarity=0.209 Sum_probs=34.0
Q ss_pred cCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 90 KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
+.+++.+|..-|+.-.+.. +-|...|..+.++|.+.|++.-|...|.+..
T Consensus 574 ea~n~h~aV~~fQsALR~d---PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTD---PKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred CccchhhHHHHHHHHhcCC---chhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 3344444444444333222 3577888999999999999999999998665
No 272
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.45 E-value=8.5 Score=25.54 Aligned_cols=57 Identities=5% Similarity=-0.120 Sum_probs=31.2
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhc
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS 72 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 72 (170)
+..-.+.+..+++..+++-++.-+--.|...++..++.. ..|++.+|..+|+++.+.
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i--~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHI--VRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHH--HhCCHHHHHHHHHHHhcc
Confidence 333445567777777777662222222333344444433 556777777777776554
No 273
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=85.34 E-value=1.2 Score=28.51 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=20.3
Q ss_pred ccchHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038114 56 LRSLQLGRKVHDHILSSKSQPDVVLQNYILNM 87 (170)
Q Consensus 56 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 87 (170)
.|.-.+|..+|..|+++|-+|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3555677778888888877765 46666654
No 274
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=85.09 E-value=10 Score=26.05 Aligned_cols=126 Identities=13% Similarity=0.087 Sum_probs=68.4
Q ss_pred hhHhHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhh-------------cccchHHHHHHHHHHHhc--
Q 038114 8 QLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCS-------------SLRSLQLGRKVHDHILSS-- 72 (170)
Q Consensus 8 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-------------~~~~~~~a~~~~~~m~~~-- 72 (170)
...+.+..++-+.|+++.|...++...+...-.|.. -+...+.+.+ ..+....|...|..+.+.
T Consensus 43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP 121 (203)
T PF13525_consen 43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP 121 (203)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCc
Confidence 344557899999999999999999973443333322 2222222221 223345677777777654
Q ss_pred --CCCCCHHHHH------------HHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHH
Q 038114 73 --KSQPDVVLQN------------YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134 (170)
Q Consensus 73 --~~~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 134 (170)
...++....- .+.+.|.+.|.+..|..-|+.+.+.=..++......-.++.++-+.|..+.+
T Consensus 122 ~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 122 NSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 1111111111 2345677888888888888877654110022233456667777777776644
No 275
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.04 E-value=3.4 Score=23.86 Aligned_cols=46 Identities=15% Similarity=-0.043 Sum_probs=24.4
Q ss_pred ccCCHHHHHHHHHHHHhhCCC-Ccchh-hHHHHHHHhhcccchHHHHHH
Q 038114 19 IQNLYNEALVAFDFLQNNTNF-RIRPS-TYACLISTCSSLRSLQLGRKV 65 (170)
Q Consensus 19 ~~~~~~~a~~~~~~m~~~~~~-~p~~~-~~~~li~~~~~~~~~~~a~~~ 65 (170)
...+.+.|+..|... .+.-. +|+.. ++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~a-L~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKA-LEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHH-HhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666655 33222 22222 556666666666666655543
No 276
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=84.75 E-value=13 Score=31.64 Aligned_cols=107 Identities=14% Similarity=0.177 Sum_probs=76.4
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhc-CC--------CCCHHHHHHH
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS-KS--------QPDVVLQNYI 84 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~--------~~~~~~~~~l 84 (170)
.+-|...|+.+.|.+-++.+ -+..+|..|-+.|.+.++++-|.-.+..|... |. .|+ .+=.-+
T Consensus 735 FSfyvtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakv 806 (1416)
T KOG3617|consen 735 FSFYVTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKV 806 (1416)
T ss_pred eeEEEEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHH
Confidence 66788999999999988888 34568999999999999999888888777643 21 221 122222
Q ss_pred HHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHH
Q 038114 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139 (170)
Q Consensus 85 i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~ 139 (170)
--.....|.+++|+.+|+.-+.. ..|=..|-..|.|++|+++-+
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR~-----------DLlNKlyQs~g~w~eA~eiAE 850 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKRY-----------DLLNKLYQSQGMWSEAFEIAE 850 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH-----------HHHHHHHHhcccHHHHHHHHh
Confidence 22334568899999999886643 334455667789999988875
No 277
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=84.27 E-value=2.1 Score=26.35 Aligned_cols=48 Identities=15% Similarity=0.045 Sum_probs=30.1
Q ss_pred HHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCcccc
Q 038114 121 IIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 121 li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~ 168 (170)
++..+...+..-.|.++++.+.+.+..++..|.-..|+.+...|.+..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 344444445555677777777776666677776666666666665543
No 278
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.24 E-value=9.4 Score=25.06 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=9.4
Q ss_pred HcCCCHHHHHHHHhhcccC
Q 038114 89 GKCGSLEDARVVSDEMPQR 107 (170)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~ 107 (170)
.+.|+|.+|.++|++..+.
T Consensus 55 i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 55 IARGNYDEAARILRELLSS 73 (153)
T ss_pred HHcCCHHHHHHHHHhhhcc
Confidence 3445555555555555443
No 279
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.12 E-value=14 Score=27.11 Aligned_cols=141 Identities=9% Similarity=0.046 Sum_probs=82.6
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS 93 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 93 (170)
.......|++.+|..+|+.. ....- -+...--.+..++...|+.+.|..++..+...--.........-|..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~a-l~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQA-LQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHH-HHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 44567778888888888887 44322 23556677788888888888888888887654322223332333444444433
Q ss_pred HHHHHHHHhhcccCCCCCCC-ChhhHHHHHHHHhCCCChHHHHHHHHHHHhC--CCCCCHhhHHHHHHHhcC
Q 038114 94 LEDARVVSDEMPQRNVIESP-DLASWNAIIAGVASPSNANEAMSLFSEMRDR--ELIPDGLTVRSLLCACTS 162 (170)
Q Consensus 94 ~~~a~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~p~~~t~~~ll~~~~~ 162 (170)
..+...+-..... .| |...--.+-..+...|+.+.|.+.+-.+.+. |.. |...=..|++.+.-
T Consensus 219 ~~~~~~l~~~~aa-----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~ 284 (304)
T COG3118 219 TPEIQDLQRRLAA-----DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEA 284 (304)
T ss_pred CCCHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHh
Confidence 3333333222222 44 4555566678888889999998876666544 332 33333444444433
No 280
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=84.03 E-value=2.7 Score=30.81 Aligned_cols=47 Identities=19% Similarity=0.164 Sum_probs=36.9
Q ss_pred CCChhh-HHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038114 112 SPDLAS-WNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158 (170)
Q Consensus 112 ~p~~~~-~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~ 158 (170)
.||..+ ||..|..-.+.|++++|+.|++|-++.|+.--..||..-++
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 455554 67889999999999999999999999998877777665443
No 281
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.89 E-value=9.8 Score=26.89 Aligned_cols=119 Identities=10% Similarity=-0.017 Sum_probs=76.1
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHc
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS--KSQPDVVLQNYILNMYGK 90 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~ 90 (170)
.++.+.+.++..+++....+-.+.+ +.|..+-..++..++-.|++++|..-++-.-+. ...+...+|..+|++-.-
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~ 84 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAA 84 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH
Confidence 4788999999999999886652332 345667788999999999999998877766543 345567788888876422
Q ss_pred CCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHh-CCCChHHHHHHHH
Q 038114 91 CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVA-SPSNANEAMSLFS 139 (170)
Q Consensus 91 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~l~~ 139 (170)
. .++|..=...|+.-.|...---.++.+.. +.+..-+|.+-+.
T Consensus 85 R------~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alr 128 (273)
T COG4455 85 R------NEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALR 128 (273)
T ss_pred H------HHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHH
Confidence 1 34566555555532245444445555443 3333444443333
No 282
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=83.85 E-value=6.4 Score=23.15 Aligned_cols=43 Identities=12% Similarity=-0.025 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 038114 64 KVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106 (170)
Q Consensus 64 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 106 (170)
++|+-.+..|+..|+.+|-+++...--+=.++...++++.|-.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666677777777777777766666666776777766653
No 283
>PLN02789 farnesyltranstransferase
Probab=83.64 E-value=16 Score=27.23 Aligned_cols=147 Identities=10% Similarity=-0.003 Sum_probs=88.2
Q ss_pred hHhH-HHhhhcccC-CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccc--hHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038114 9 LRFT-FYNSQPIQN-LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRS--LQLGRKVHDHILSSKSQPDVVLQNYI 84 (170)
Q Consensus 9 ~~~~-li~~~~~~~-~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~l 84 (170)
..|+ .-..+...| .+++++..++++ ...+.+ +..+|+-.--.+.+.+. .+.+..+++.+.+.. .-+..+|+-.
T Consensus 72 taW~~R~~iL~~L~~~l~eeL~~~~~~-i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R 148 (320)
T PLN02789 72 TVWHFRRLCLEALDADLEEELDFAEDV-AEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHR 148 (320)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHH-HHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 3454 333344445 578999999888 554332 22345433223334444 366788888887664 3468889888
Q ss_pred HHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCC---CCh----HHHHHHHHHHHhCCCCCCHhhHHHHH
Q 038114 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP---SNA----NEAMSLFSEMRDRELIPDGLTVRSLL 157 (170)
Q Consensus 85 i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~---g~~----~~a~~l~~~m~~~~~~p~~~t~~~ll 157 (170)
--.+.+.|+++++.+.++++.+.+. -+...|+.....+.+. |.. +....+..+..... .-|...|+.+-
T Consensus 149 ~w~l~~l~~~~eeL~~~~~~I~~d~---~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~ 224 (320)
T PLN02789 149 QWVLRTLGGWEDELEYCHQLLEEDV---RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLR 224 (320)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHCC---CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHH
Confidence 8888888999999999999987766 3445666665554443 222 34555554444332 22444455555
Q ss_pred HHhcC
Q 038114 158 CACTS 162 (170)
Q Consensus 158 ~~~~~ 162 (170)
..+..
T Consensus 225 ~ll~~ 229 (320)
T PLN02789 225 GLFKD 229 (320)
T ss_pred HHHhc
Confidence 55544
No 284
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.26 E-value=18 Score=27.44 Aligned_cols=133 Identities=7% Similarity=-0.059 Sum_probs=84.0
Q ss_pred ccchhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHH----HHHHHhhcccchHHHHHHHHHHHhcCCCCCHH
Q 038114 5 LKTQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYA----CLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79 (170)
Q Consensus 5 ~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 79 (170)
..+...+. .=.+|.-+|+.......++++ ... ..|+...|. ..--+....|-+++|++.-++-.+-+ +.|.-
T Consensus 134 PtDlla~kfsh~a~fy~G~~~~~k~ai~kI-ip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~W 210 (491)
T KOG2610|consen 134 PTDLLAVKFSHDAHFYNGNQIGKKNAIEKI-IPK-WNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN-RFDCW 210 (491)
T ss_pred chhhhhhhhhhhHHHhccchhhhhhHHHHh-ccc-cCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC-CcchH
Confidence 34566677 467888888888888888887 322 234443222 22233356788888888887776654 45666
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhcccCCCC-CCCChhhHHHHHHHHhCCCChHHHHHHHHH
Q 038114 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVI-ESPDLASWNAIIAGVASPSNANEAMSLFSE 140 (170)
Q Consensus 80 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~l~~~ 140 (170)
.-.++-..+--.++++++.+...+-...--- .-.-.+-|-...-.+...++++.|+++|+.
T Consensus 211 a~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 211 ASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 7777778888888888888876654322110 011123344444455666899999998873
No 285
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=82.56 E-value=15 Score=26.42 Aligned_cols=52 Identities=17% Similarity=0.036 Sum_probs=25.7
Q ss_pred cccchHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 038114 55 SLRSLQLGRKVHDHILSSK--SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106 (170)
Q Consensus 55 ~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 106 (170)
+.|++++|.+.|+.+.... -+....+--.++.++-+.+++++|...+++...
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3455556666665555431 122233444444555555556666555555443
No 286
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=82.15 E-value=3.6 Score=18.77 Aligned_cols=26 Identities=8% Similarity=0.125 Sum_probs=15.9
Q ss_pred hHHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 117 SWNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 117 ~~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
+|..+-..|...|++++|+..|++..
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 45566666666666666666666554
No 287
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=81.76 E-value=21 Score=27.19 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=14.6
Q ss_pred HHhhhcccCCHHHHHHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFL 33 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m 33 (170)
+-+.+...|++.+|+.-|...
T Consensus 44 lGk~lla~~Q~sDALt~yHaA 64 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAA 64 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHH
Confidence 455666677777777777766
No 288
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=81.68 E-value=11 Score=24.06 Aligned_cols=58 Identities=9% Similarity=0.202 Sum_probs=42.8
Q ss_pred HHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038114 27 LVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86 (170)
Q Consensus 27 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 86 (170)
.+-+... -.-.+.|++.....-+++|-+.+++..|.++|+-++.. +.+....|-.+++
T Consensus 69 rkglN~l-~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 69 RKGLNNL-FDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHhh-hccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 3334444 44567899999999999999999999999999988754 3333445665553
No 289
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.66 E-value=14 Score=25.18 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=88.7
Q ss_pred hcccCCHHHHHHHHHHHHhhCCCCcchhh-HHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHH-HHHHHHHH--HHcCC
Q 038114 17 QPIQNLYNEALVAFDFLQNNTNFRIRPST-YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV-LQNYILNM--YGKCG 92 (170)
Q Consensus 17 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~--~~~~~ 92 (170)
+++.+..++|+.-|..+ +.-|..--+.. .--+-......|+...|...|++.-.....|-+. -...|=.+ +.-+|
T Consensus 68 lA~~~k~d~Alaaf~~l-ektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDL-EKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHH-HhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 46788999999999999 77665432221 1111223456789999999999998765555544 33333333 34568
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCH
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDG 150 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~ 150 (170)
.++....-.+-+...+- .-....=.+|--+--+.|++.+|...|..+...-..|--
T Consensus 147 sy~dV~srvepLa~d~n--~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprn 202 (221)
T COG4649 147 SYDDVSSRVEPLAGDGN--PMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRN 202 (221)
T ss_pred cHHHHHHHhhhccCCCC--hhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHH
Confidence 89988888887766555 333444456666667889999999999999876555543
No 290
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.63 E-value=21 Score=27.10 Aligned_cols=116 Identities=13% Similarity=0.046 Sum_probs=75.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHcCCCHHH
Q 038114 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS---KSQPDVVLQNYILNMYGKCGSLED 96 (170)
Q Consensus 20 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~~~~~~ 96 (170)
.|+..+|-..|+++ .+ ..+.|...+.-.=.+|...|..+.-...++.+.-. +++.-+.+-...--++..+|-+++
T Consensus 116 ~g~~h~a~~~wdkl-L~-d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKL-LD-DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHH-HH-hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45666666667766 33 34566667777777888888888877788777643 222223444444455567888888
Q ss_pred HHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHH
Q 038114 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140 (170)
Q Consensus 97 a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~ 140 (170)
|++.-++-.+-+- .|.-.-.+....+-..|++.++.++..+
T Consensus 194 AEk~A~ralqiN~---~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQINR---FDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCCC---cchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 8888877655433 4555556666777777888888777654
No 291
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.56 E-value=4.3 Score=20.51 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=12.7
Q ss_pred HHHHhCCCChHHHHHHHHHHHhCC
Q 038114 122 IAGVASPSNANEAMSLFSEMRDRE 145 (170)
Q Consensus 122 i~~~~~~g~~~~a~~l~~~m~~~~ 145 (170)
..+|...|+.+.|.+++++....|
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHHcC
Confidence 345555555555555555555433
No 292
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.03 E-value=4.5 Score=20.43 Aligned_cols=19 Identities=11% Similarity=0.307 Sum_probs=8.2
Q ss_pred HhhcccchHHHHHHHHHHH
Q 038114 52 TCSSLRSLQLGRKVHDHIL 70 (170)
Q Consensus 52 ~~~~~~~~~~a~~~~~~m~ 70 (170)
+|...|+.+.|.++++++.
T Consensus 8 ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 8 AYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHcCChHHHHHHHHHHH
Confidence 3444444444444444444
No 293
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=80.80 E-value=18 Score=25.77 Aligned_cols=131 Identities=8% Similarity=-0.012 Sum_probs=81.0
Q ss_pred hHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhc-----------------ccc---hHHHHHHHHHHH
Q 038114 11 FTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSS-----------------LRS---LQLGRKVHDHIL 70 (170)
Q Consensus 11 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-----------------~~~---~~~a~~~~~~m~ 70 (170)
+.+..++-+.+++++|...+++.-+...-.|+. -+...+.+.+. ..+ ...|...|+.++
T Consensus 73 l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li 151 (243)
T PRK10866 73 LDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV 151 (243)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH
Confidence 456888999999999999999983444444443 33333333221 112 234556666666
Q ss_pred hc----CCCCCHHHHH------------HHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHH
Q 038114 71 SS----KSQPDVVLQN------------YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134 (170)
Q Consensus 71 ~~----~~~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 134 (170)
+. ...++....- .+.+.|.+.|.+..|..=|+.+.+.=..++......-.++.+|...|..++|
T Consensus 152 ~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a 231 (243)
T PRK10866 152 RGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQA 231 (243)
T ss_pred HHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHH
Confidence 53 2222222111 2334577888888888888888753221155556677788899999999988
Q ss_pred HHHHHHHH
Q 038114 135 MSLFSEMR 142 (170)
Q Consensus 135 ~~l~~~m~ 142 (170)
......+.
T Consensus 232 ~~~~~~l~ 239 (243)
T PRK10866 232 DKVAKIIA 239 (243)
T ss_pred HHHHHHHh
Confidence 88776554
No 294
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.72 E-value=25 Score=28.82 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=12.9
Q ss_pred HHHHHHHhCCCChHHHHHHHHH
Q 038114 119 NAIIAGVASPSNANEAMSLFSE 140 (170)
Q Consensus 119 ~~li~~~~~~g~~~~a~~l~~~ 140 (170)
|....+|...|+++++.+++.+
T Consensus 725 N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 725 NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred chHHHHHHHcCCHHHHHHHHHh
Confidence 4444555566777776666543
No 295
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.55 E-value=28 Score=29.51 Aligned_cols=82 Identities=10% Similarity=-0.031 Sum_probs=45.0
Q ss_pred hhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHH
Q 038114 16 SQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95 (170)
Q Consensus 16 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 95 (170)
.+-+.|++++|..-|-+- - .-+.| .-+|.-|-.+.+..+-...++.+.+.|+. +...-+.||.+|.+.++.+
T Consensus 377 ~Ly~Kgdf~~A~~qYI~t-I-~~le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIET-I-GFLEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHhcCCHHHHHHHHHHH-c-ccCCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchH
Confidence 344567777776655443 1 11122 22344445555555555666666666644 4555667778888777666
Q ss_pred HHHHHHhhcc
Q 038114 96 DARVVSDEMP 105 (170)
Q Consensus 96 ~a~~~~~~m~ 105 (170)
.-.+..+.-.
T Consensus 449 kL~efI~~~~ 458 (933)
T KOG2114|consen 449 KLTEFISKCD 458 (933)
T ss_pred HHHHHHhcCC
Confidence 6555444433
No 296
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.26 E-value=30 Score=27.50 Aligned_cols=102 Identities=8% Similarity=0.001 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 038114 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104 (170)
Q Consensus 25 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 104 (170)
+..+.+.......|+..+......+... ..|+...|+.++++....+ ....++..+ .+++
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~--~~~it~~~V-------------~~~l--- 243 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFT--DSKLTGVKI-------------RKMI--- 243 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhC--CCCcCHHHH-------------HHHh---
Confidence 3344444443556777777776666655 3477888888887765321 011122222 1111
Q ss_pred ccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhh
Q 038114 105 PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152 (170)
Q Consensus 105 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t 152 (170)
|. ++...+..++.+....+....|+.++.+|...|.-|....
T Consensus 244 ---g~---~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 244 ---GY---HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFL 285 (484)
T ss_pred ---CC---CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 33 3445566666666665556677777777777777666543
No 297
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=78.96 E-value=3.7 Score=26.69 Aligned_cols=44 Identities=7% Similarity=0.049 Sum_probs=21.0
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCC
Q 038114 65 VHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 65 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 109 (170)
+...+++.|+.+++ .--.+++.+...+.+-.|.++++.+++.+.
T Consensus 8 ~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p 51 (145)
T COG0735 8 AIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGP 51 (145)
T ss_pred HHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCC
Confidence 33444445554433 233444555555444555555555555444
No 298
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=78.16 E-value=29 Score=27.68 Aligned_cols=117 Identities=8% Similarity=-0.022 Sum_probs=76.7
Q ss_pred ccCCHH-HHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 038114 19 IQNLYN-EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97 (170)
Q Consensus 19 ~~~~~~-~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 97 (170)
..|++- ...++++.+ +...--|+....-+.|. ...|.++.+.+.+....+. +..+..+..++++...+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~l-r~~~~~p~~i~l~~~i~--~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAAL-RNQQQDPVLIQLRSVIF--SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHH-HhCCCCchhhHHHHHHH--HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 344444 446688888 54444466555555544 4568999988888776553 344566888999999999999999
Q ss_pred HHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 98 ~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
..+-..|....+. .|.+.+ ...-.--..|-++++...|++..
T Consensus 377 ~s~a~~~l~~eie-~~ei~~--iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLT--VAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHHHhccccC-Chhhee--eecccHHHHhHHHHHHHHHHHHh
Confidence 9999999877773 333222 22222233456777777777764
No 299
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=78.12 E-value=12 Score=31.10 Aligned_cols=70 Identities=11% Similarity=0.022 Sum_probs=45.9
Q ss_pred CcchhhHHHHHHHhhcccchHHHHHHHHHHHhc-CCCCCHHHHHHHHHH------HHcCCCHHHHHHHHhhcccCCC
Q 038114 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSS-KSQPDVVLQNYILNM------YGKCGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 40 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~------~~~~~~~~~a~~~~~~m~~~~~ 109 (170)
.|.+..|..+-......-.++-|+..|-..... |+..=...-++.=+. -+--|.+++|+++|-+|..+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh
Confidence 488899999888888777888888888777653 543221111111111 1124788999999988877655
No 300
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=77.76 E-value=3.8 Score=27.37 Aligned_cols=63 Identities=5% Similarity=-0.104 Sum_probs=38.3
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChH
Q 038114 67 DHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNAN 132 (170)
Q Consensus 67 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~ 132 (170)
+.+++.|+.++..=. .++..+......-.|.++++.+.+.+. ..+..|---.|..+...|-+.
T Consensus 15 ~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~--~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 15 KLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEP--QAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCC--CCCcchHHHHHHHHHHCCCEE
Confidence 334566776665444 444555555566677888888877776 566555444455666666543
No 301
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.60 E-value=18 Score=24.04 Aligned_cols=63 Identities=17% Similarity=0.131 Sum_probs=43.1
Q ss_pred hhHHHHHHHh---hcccchHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCC
Q 038114 44 STYACLISTC---SSLRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108 (170)
Q Consensus 44 ~~~~~li~~~---~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 108 (170)
.+.+.||... .+.++.+++..++.-+.-... .+...++... .+.+.|+|.+|.++|+++.+..
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC
Confidence 3455555544 567899999999999976421 2223344333 4678899999999999987653
No 302
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=76.88 E-value=10 Score=20.73 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=22.1
Q ss_pred cccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-----cCCCHHHHHHH
Q 038114 55 SLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYG-----KCGSLEDARVV 100 (170)
Q Consensus 55 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-----~~~~~~~a~~~ 100 (170)
+.|++-+|.++++++-...-.+....+-.||.... +.|+.+.|.++
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34555566666665554322234445555554432 44555555554
No 303
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=76.00 E-value=45 Score=27.80 Aligned_cols=101 Identities=15% Similarity=0.085 Sum_probs=61.1
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHH
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~ 124 (170)
.|-.....+-..|+...|..++.+..+.... +-..|-.-++.-..+..++.|.++|...... .|+...|.--+..
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~----sgTeRv~mKs~~~ 660 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI----SGTERVWMKSANL 660 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc----CCcchhhHHHhHH
Confidence 3333444455567777777777776665322 4566777777777777777777777766653 3444555444444
Q ss_pred HhCCCChHHHHHHHHHHHhCCCCCCHhh
Q 038114 125 VASPSNANEAMSLFSEMRDRELIPDGLT 152 (170)
Q Consensus 125 ~~~~g~~~~a~~l~~~m~~~~~~p~~~t 152 (170)
---.++.++|.+++++..+. .|+..-
T Consensus 661 er~ld~~eeA~rllEe~lk~--fp~f~K 686 (913)
T KOG0495|consen 661 ERYLDNVEEALRLLEEALKS--FPDFHK 686 (913)
T ss_pred HHHhhhHHHHHHHHHHHHHh--CCchHH
Confidence 44557777777777766533 444433
No 304
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=75.45 E-value=14 Score=21.61 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHH
Q 038114 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135 (170)
Q Consensus 62 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 135 (170)
+..++..+.+.|+- +......+ -+...+.++|.++++.+..+|. ..|.++..++-..|+...|.
T Consensus 18 ~~~v~~~L~~~~Vl-t~~~~e~I---~~~~tr~~q~~~LLd~L~~RG~------~AF~~F~~aL~~~~~~~LA~ 81 (84)
T cd08326 18 PKYLWDHLLSRGVF-TPDMIEEI---QAAGSRRDQARQLLIDLETRGK------QAFPAFLSALRETGQTDLAE 81 (84)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHH---HcCCCHHHHHHHHHHHHHhcCH------HHHHHHHHHHHhcCchHHHH
Confidence 34577777777643 33322222 2244557888888888888887 78888888887777665553
No 305
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=75.44 E-value=23 Score=24.24 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=9.4
Q ss_pred HHHcCCCHHHHHHHHhhcc
Q 038114 87 MYGKCGSLEDARVVSDEMP 105 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~ 105 (170)
.|.+.|.+++|.++++..-
T Consensus 120 VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHhcCchHHHHHHHHHHh
Confidence 3445555555555555443
No 306
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=74.71 E-value=2.7 Score=26.94 Aligned_cols=29 Identities=38% Similarity=0.650 Sum_probs=17.3
Q ss_pred CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHH
Q 038114 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~ 124 (170)
|.-..|..+|++|.+.|- +|| .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~--pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGN--PPD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCC--CCc--cHHHHHHH
Confidence 344556666666666666 555 46666554
No 307
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=74.60 E-value=47 Score=27.32 Aligned_cols=77 Identities=9% Similarity=0.046 Sum_probs=49.7
Q ss_pred cchhHhHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccc-------hHHHHHHHHHHHhcCCCCCH
Q 038114 6 KTQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRS-------LQLGRKVHDHILSSKSQPDV 78 (170)
Q Consensus 6 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~-------~~~a~~~~~~m~~~~~~~~~ 78 (170)
.+...|.+|.-|.++|.+++|.++.... +.........|...+..+....+ -+....-|++..+.....|+
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~--~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp 187 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANEN--RNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP 187 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHT--GGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHh--hhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh
Confidence 5567899999999999999999999666 34455666788899999977533 23444445554444332254
Q ss_pred H---HHHHH
Q 038114 79 V---LQNYI 84 (170)
Q Consensus 79 ~---~~~~l 84 (170)
. +|.++
T Consensus 188 yK~AvY~il 196 (613)
T PF04097_consen 188 YKRAVYKIL 196 (613)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 3 55555
No 308
>PRK09462 fur ferric uptake regulator; Provisional
Probab=74.54 E-value=10 Score=24.59 Aligned_cols=59 Identities=8% Similarity=0.023 Sum_probs=25.9
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCC
Q 038114 68 HILSSKSQPDVVLQNYILNMYGKC-GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPS 129 (170)
Q Consensus 68 ~m~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g 129 (170)
.+.+.|+.++.. --.++..+... +..-.|.++++.+++.+. ..+..|-=-.|..+...|
T Consensus 7 ~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~--~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 7 ALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGE--EIGLATVYRVLNQFDDAG 66 (148)
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCC--CCCHHHHHHHHHHHHHCC
Confidence 344455554432 22233333332 344555666666655544 444444333333344444
No 309
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=74.39 E-value=6.8 Score=17.61 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=9.0
Q ss_pred HHHHHHHcCCCHHHHHHHHhh
Q 038114 83 YILNMYGKCGSLEDARVVSDE 103 (170)
Q Consensus 83 ~li~~~~~~~~~~~a~~~~~~ 103 (170)
.+-..|.+.|++++|.+.|++
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~ 26 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEK 26 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHH
Confidence 333444444444444444443
No 310
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=74.38 E-value=21 Score=23.20 Aligned_cols=63 Identities=8% Similarity=0.154 Sum_probs=44.6
Q ss_pred HHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHcCCC
Q 038114 28 VAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV-VLQNYILNMYGKCGS 93 (170)
Q Consensus 28 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~ 93 (170)
++...+ +..|+++++. =..++......++.-.|..+|+++.+.+...+. .+|++| +.+...|-
T Consensus 7 ~~~~~l-k~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L-~~l~e~Gl 70 (145)
T COG0735 7 DAIERL-KEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTL-KLLEEAGL 70 (145)
T ss_pred HHHHHH-HHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHH-HHHHHCCC
Confidence 455666 8889988875 345666777777778999999999998766653 456655 66665553
No 311
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=73.94 E-value=40 Score=26.22 Aligned_cols=123 Identities=12% Similarity=0.043 Sum_probs=75.4
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHh--hcccchHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHcCCCHH
Q 038114 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTC--SSLRSLQLGRKVHDHILSSKSQPDV--VLQNYILNMYGKCGSLE 95 (170)
Q Consensus 20 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~~~~~ 95 (170)
.|+-..|+++-.+- . .-+.-|..-+-.|+.+= .-.|+.++|.+-|+.|... |.. .-...|.-.--+.|..+
T Consensus 97 AGda~lARkmt~~~-~-~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 97 AGDASLARKMTARA-S-KLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred cCchHHHHHHHHHH-H-hhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence 35556666665554 2 11334444444455443 3458999999999999753 222 12233433444678877
Q ss_pred HHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCC-CCCCH
Q 038114 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE-LIPDG 150 (170)
Q Consensus 96 ~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~-~~p~~ 150 (170)
.|...-+.--..-. --.-.+.+.+...|..|+|+.|+++.+.-+... +.++.
T Consensus 172 aAr~yAe~Aa~~Ap---~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ 224 (531)
T COG3898 172 AARHYAERAAEKAP---QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDV 224 (531)
T ss_pred HHHHHHHHHHhhcc---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhh
Confidence 77776665443211 122478899999999999999999998765443 44443
No 312
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.93 E-value=15 Score=21.29 Aligned_cols=46 Identities=11% Similarity=0.131 Sum_probs=28.9
Q ss_pred cccchHHHHHHHHHHHhcCCC-CC-HHHHHHHHHHHHcCCCHHHHHHH
Q 038114 55 SLRSLQLGRKVHDHILSSKSQ-PD-VVLQNYILNMYGKCGSLEDARVV 100 (170)
Q Consensus 55 ~~~~~~~a~~~~~~m~~~~~~-~~-~~~~~~li~~~~~~~~~~~a~~~ 100 (170)
..++-++|...|....+.-.. ++ -.++..|+.+|+.-|.+.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777766654222 22 34677777777777777766653
No 313
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=73.52 E-value=52 Score=27.35 Aligned_cols=148 Identities=13% Similarity=0.188 Sum_probs=81.3
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcc---hhhHHHHHHHhhcccchHHHHHHHHHHHhcC----------
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIR---PSTYACLISTCSSLRSLQLGRKVHDHILSSK---------- 73 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------- 73 (170)
..-|. +-+-|-.+|+.+.|+.+|++. ..-.++-- ..+|+..-..=.+..+++.|.++.+......
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka-~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~ 465 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKA-TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDN 465 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHh-hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcC
Confidence 34466 788888999999999999998 55544322 2234443333344555666666554443211
Q ss_pred -CCC------CHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCC--------------------------------CCCC
Q 038114 74 -SQP------DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI--------------------------------ESPD 114 (170)
Q Consensus 74 -~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--------------------------------~~p~ 114 (170)
.++ +..+|+-.++.--..|-++.-..+|+.+.+..+. .-|+
T Consensus 466 ~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 466 SEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred CCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 011 1233444444444445555555555555443332 0233
Q ss_pred h-hhHHHHHHHHh-CCC--ChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 038114 115 L-ASWNAIIAGVA-SPS--NANEAMSLFSEMRDRELIPDGLTVRSLL 157 (170)
Q Consensus 115 ~-~~~~~li~~~~-~~g--~~~~a~~l~~~m~~~~~~p~~~t~~~ll 157 (170)
+ ..||.-+..+. +.| ..+.|..+|++..+ |+.|...-+.-|+
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLl 591 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLL 591 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHH
Confidence 2 24555554443 233 68999999999888 6666655544444
No 314
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=73.42 E-value=6.5 Score=29.71 Aligned_cols=79 Identities=11% Similarity=0.029 Sum_probs=47.1
Q ss_pred hhcccchHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCCh
Q 038114 53 CSSLRSLQLGRKVHDHILSSKSQP-DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNA 131 (170)
Q Consensus 53 ~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~ 131 (170)
|.+.|.+++|...|..-... .| +++++..--.+|.+...+..|+.=.......+ ...+.+|+|.+..
T Consensus 107 yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd----------~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD----------KLYVKAYSRRMQA 174 (536)
T ss_pred hhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh----------HHHHHHHHHHHHH
Confidence 44566777777766654432 44 66777777777777777776665544433221 2345667776666
Q ss_pred HHHHHHHHHHHh
Q 038114 132 NEAMSLFSEMRD 143 (170)
Q Consensus 132 ~~a~~l~~~m~~ 143 (170)
..++....+-++
T Consensus 175 R~~Lg~~~EAKk 186 (536)
T KOG4648|consen 175 RESLGNNMEAKK 186 (536)
T ss_pred HHHHhhHHHHHH
Confidence 666655555543
No 315
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=73.22 E-value=21 Score=22.59 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHhh
Q 038114 61 LGRKVHDHILSSKSQPD-VVLQNYILNMYGKCGSLEDARVVSDE 103 (170)
Q Consensus 61 ~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~ 103 (170)
.+..+|..|...|+.-. +..|...-..+.+.|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77778888877766443 66777777777888888888887763
No 316
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=73.20 E-value=2.5 Score=26.29 Aligned_cols=49 Identities=14% Similarity=0.065 Sum_probs=31.0
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCcccc
Q 038114 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 120 ~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~ 168 (170)
.++..+...+.+-.|.++++.|.+.+...+..|.-.-|+.+.+.|-+..
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 3444455555566777788878777777777777666777766665543
No 317
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=72.92 E-value=25 Score=23.53 Aligned_cols=123 Identities=7% Similarity=0.066 Sum_probs=81.2
Q ss_pred cchhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038114 6 KTQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84 (170)
Q Consensus 6 ~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 84 (170)
++...+. +++.+.+.|++....+++ ..++-+|+......+-.+... ...+.++=-+|.+. =...+..+
T Consensus 27 ~~~~L~~lli~lLi~~~~~~~L~qll-----q~~Vi~DSk~lA~~LLs~~~~--~~~~~Ql~lDMLkR----L~~~~~~i 95 (167)
T PF07035_consen 27 VQHELYELLIDLLIRNGQFSQLHQLL-----QYHVIPDSKPLACQLLSLGNQ--YPPAYQLGLDMLKR----LGTAYEEI 95 (167)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHH-----hhcccCCcHHHHHHHHHhHcc--ChHHHHHHHHHHHH----hhhhHHHH
Confidence 3445667 799999999977665554 444778888777777665543 23344444444332 01256778
Q ss_pred HHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCC
Q 038114 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145 (170)
Q Consensus 85 i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 145 (170)
+..+...|++-+|.+..+....... .....++++-...++...-..+|+-....+
T Consensus 96 ievLL~~g~vl~ALr~ar~~~~~~~------~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 96 IEVLLSKGQVLEALRYARQYHKVDS------VPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCccc------CCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 8899999999999999988643322 344667888888887766666665555443
No 318
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=72.68 E-value=17 Score=21.42 Aligned_cols=43 Identities=7% Similarity=0.075 Sum_probs=32.3
Q ss_pred HHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHh
Q 038114 28 VAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILS 71 (170)
Q Consensus 28 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 71 (170)
++|+.. +..|+..|+..|..++....-.=.++...++++.|-.
T Consensus 29 EL~ELa-~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELA-QLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHH-HHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 677777 7778888888888887777777777777777777754
No 319
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=72.44 E-value=7.9 Score=17.48 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=15.6
Q ss_pred hHHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 117 SWNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 117 ~~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
+|..+-..|...|++++|...|++-.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455556666666666666666544
No 320
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=71.98 E-value=31 Score=28.74 Aligned_cols=93 Identities=13% Similarity=0.200 Sum_probs=60.5
Q ss_pred HHHHHhhcccchHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHh---h-cccCCCCCCCChhhHHHH
Q 038114 48 CLISTCSSLRSLQLGRKVHDHILSS--KSQPDVVLQNYILNMYGKCGSLEDARVVSD---E-MPQRNVIESPDLASWNAI 121 (170)
Q Consensus 48 ~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~---~-m~~~~~~~~p~~~~~~~l 121 (170)
+|+.+|...|++..+.++++.+... |-..=...||.-|+...+.|.++. .++.+ + +.+.-+ .-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l-~~~~~~~~~~lq~a~l--n~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFEL-TDVLSNAKELLQQARL--NGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccH-HHHHHHHHHHHHHhhc--CCcchHHHHH
Confidence 7888888888888888888888764 323335578888888888887543 22222 1 222334 6677788888
Q ss_pred HHHHhCCCChHHHHHHHHHHHh
Q 038114 122 IAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 122 i~~~~~~g~~~~a~~l~~~m~~ 143 (170)
+.+-...-+-....-++.+...
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8776665555555555555543
No 321
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=71.74 E-value=15 Score=20.33 Aligned_cols=50 Identities=10% Similarity=-0.076 Sum_probs=31.3
Q ss_pred CcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 038114 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90 (170)
Q Consensus 40 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 90 (170)
.|....++.++..+++-.-.+++...+.+..+.|. .+..+|---++.++|
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 45556677777777777777777777777777764 345555555555544
No 322
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=71.50 E-value=18 Score=21.13 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHH
Q 038114 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135 (170)
Q Consensus 78 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 135 (170)
......+.......|+.+.|..+++.+. ++. ..|..++.++-..|....|.
T Consensus 32 ~~d~e~I~a~~~~~G~~~aa~~Ll~~L~-r~~------~Wf~~Fl~AL~~~~~~~LA~ 82 (84)
T cd08789 32 AEDKERIQAAENNSGNIKAAWTLLDTLV-RRD------NWLEPFLDALRECGLGHLAR 82 (84)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh-ccC------ChHHHHHHHHHHcCCHHHHH
Confidence 3344444444555677777777777776 444 46777777777776655554
No 323
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=71.13 E-value=14 Score=29.80 Aligned_cols=117 Identities=14% Similarity=0.103 Sum_probs=32.7
Q ss_pred cchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCC--CCChhhH
Q 038114 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIE--SPDLASW 118 (170)
Q Consensus 41 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~p~~~~~ 118 (170)
.+...-..++..|.+.|-.+.+.++.+.+-..-. ...-|..-+..+.++|+.+....+.+.+.+..... .++....
T Consensus 403 ~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll 480 (566)
T PF07575_consen 403 DTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLL 480 (566)
T ss_dssp -SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------------------------
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHH
Confidence 4555677888888888888888888887755422 24567777788888888777666655544321100 1111111
Q ss_pred HHH---------HHHH---------hCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038114 119 NAI---------IAGV---------ASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159 (170)
Q Consensus 119 ~~l---------i~~~---------~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~ 159 (170)
+.+ +..| ...|++.+|.+.+-.+...+..|...-...|.++
T Consensus 481 ~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 481 DNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp -----------------------------------------------------------
T ss_pred HHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 111 1111 3347777887777777777777777665555544
No 324
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=71.07 E-value=28 Score=23.24 Aligned_cols=64 Identities=13% Similarity=0.079 Sum_probs=43.4
Q ss_pred HHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHH
Q 038114 30 FDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95 (170)
Q Consensus 30 ~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 95 (170)
-+.+ +..|+++++.-. .++.......+.-.|.++++.+.+.+..++..|--.-|+.+...|-+.
T Consensus 14 ~~~L-~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 14 EKLC-AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHH-HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3445 777888877654 444444445667789999999999887777554444457777777543
No 325
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=71.07 E-value=26 Score=22.79 Aligned_cols=103 Identities=12% Similarity=-0.026 Sum_probs=65.3
Q ss_pred HhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccC-CCCCCCCh--hhHHHHHHHHhCC
Q 038114 52 TCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQR-NVIESPDL--ASWNAIIAGVASP 128 (170)
Q Consensus 52 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~p~~--~~~~~li~~~~~~ 128 (170)
+.+..|+++.|.+.|.+...-- +-....||.--.++--.|+.++|++=+++..+. |- +... ..|----..|-..
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~--~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGD--QTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHHHh
Confidence 3567899999999999887652 345788999999999999999998888766543 22 2111 1222222344555
Q ss_pred CChHHHHHHHHHHHhCC----------CCCCHhhHHHHH
Q 038114 129 SNANEAMSLFSEMRDRE----------LIPDGLTVRSLL 157 (170)
Q Consensus 129 g~~~~a~~l~~~m~~~~----------~~p~~~t~~~ll 157 (170)
|+-+.|..=|+.-.+.| +.|-...++-++
T Consensus 129 g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~ML 167 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQML 167 (175)
T ss_pred CchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHH
Confidence 66666666665544433 345555555544
No 326
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=70.89 E-value=6.6 Score=21.38 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=13.9
Q ss_pred HHHHHHhCCCChHHHHHHHHHHH
Q 038114 120 AIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 120 ~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
.+|.++...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44666666666666666666554
No 327
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=70.25 E-value=61 Score=27.17 Aligned_cols=94 Identities=7% Similarity=-0.015 Sum_probs=64.4
Q ss_pred HHHhhhcccCCHHHHHHHHHHHHhhC--CCCcchhhHHHHHHHhhcccchHHH--HHHH-HHHHhcCCCCCHHHHHHHHH
Q 038114 12 TFYNSQPIQNLYNEALVAFDFLQNNT--NFRIRPSTYACLISTCSSLRSLQLG--RKVH-DHILSSKSQPDVVLQNYILN 86 (170)
Q Consensus 12 ~li~~~~~~~~~~~a~~~~~~m~~~~--~~~p~~~~~~~li~~~~~~~~~~~a--~~~~-~~m~~~~~~~~~~~~~~li~ 86 (170)
.|+.+|..+|.+..+.++++.. -.. |-+.=...||.-|+...+.|.++.. .+-. +.++++-+.-|..||..|+.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~-~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~ 111 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSF-IDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHH-hcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 5899999999999999999987 543 2333344688888888888876422 1111 22233345668899999998
Q ss_pred HHHcCCCHHHHHHHHhhccc
Q 038114 87 MYGKCGSLEDARVVSDEMPQ 106 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~ 106 (170)
+-..--.-.....++.+...
T Consensus 112 ~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 112 ASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred hhcChHhHHhccHHHHHHHH
Confidence 88775555555566665554
No 328
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=69.75 E-value=16 Score=25.21 Aligned_cols=24 Identities=8% Similarity=-0.010 Sum_probs=12.3
Q ss_pred hhHHHHHHHHhCCCChHHHHHHHH
Q 038114 116 ASWNAIIAGVASPSNANEAMSLFS 139 (170)
Q Consensus 116 ~~~~~li~~~~~~g~~~~a~~l~~ 139 (170)
..-|.....|...|..+.|+.+++
T Consensus 182 qivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 182 QIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred hhHHHHHHHHHHcCCchHHHHHHh
Confidence 334555555555555555555544
No 329
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=69.48 E-value=40 Score=24.42 Aligned_cols=63 Identities=10% Similarity=0.010 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCCHH---HHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 038114 79 VLQNYILNMYGKCGSLE---DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 79 ~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
.++..++.+|...+..+ +|..+.+.+...... + +..|-.-+..+.+.++.+.+.+.+..|...
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-K--PEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-C--cHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 34555556666555433 334444444322110 1 223333344444456666666666666554
No 330
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=69.43 E-value=44 Score=24.85 Aligned_cols=71 Identities=11% Similarity=0.105 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHh-----CCCCCCHhhH
Q 038114 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD-----RELIPDGLTV 153 (170)
Q Consensus 80 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~~~~p~~~t~ 153 (170)
+++..-+.|..+|.+.+|.++.+.....+. .+...|-.++..+...|+--.|..-++.+.+ .|+..|...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp---L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP---LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh---hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 444555678888999999988887776544 6677788888888888886666666665542 3666554443
No 331
>PHA02875 ankyrin repeat protein; Provisional
Probab=68.78 E-value=42 Score=25.66 Aligned_cols=18 Identities=17% Similarity=0.145 Sum_probs=8.5
Q ss_pred HHHHHcCCCHHHHHHHHh
Q 038114 85 LNMYGKCGSLEDARVVSD 102 (170)
Q Consensus 85 i~~~~~~~~~~~a~~~~~ 102 (170)
+...++.|+.+.+..+++
T Consensus 72 L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 344444555555444443
No 332
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=67.97 E-value=25 Score=21.36 Aligned_cols=65 Identities=11% Similarity=0.027 Sum_probs=37.7
Q ss_pred HhHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcc--cchHHHHHHHHHHHhcCCCCC
Q 038114 10 RFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSL--RSLQLGRKVHDHILSSKSQPD 77 (170)
Q Consensus 10 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~~ 77 (170)
.++++..|...|+.++|..-+.++ .... -.......++..+... ..-+.+-.++..+.+.+..+.
T Consensus 5 i~~~l~ey~~~~d~~ea~~~l~el-~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~ 71 (113)
T PF02847_consen 5 IFSILMEYFSSGDVDEAVECLKEL-KLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISK 71 (113)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHT-T-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-H
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHh-CCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCH
Confidence 345788888889999999998887 4331 2222334444444333 334555667777776665443
No 333
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=67.29 E-value=25 Score=21.29 Aligned_cols=22 Identities=5% Similarity=0.031 Sum_probs=11.0
Q ss_pred HHHHHhhcccchHHHHHHHHHH
Q 038114 48 CLISTCSSLRSLQLGRKVHDHI 69 (170)
Q Consensus 48 ~li~~~~~~~~~~~a~~~~~~m 69 (170)
.+|.-|...++.++|..-+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444455555666555555554
No 334
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=66.44 E-value=57 Score=24.99 Aligned_cols=126 Identities=13% Similarity=0.008 Sum_probs=87.8
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcc------------hh--hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHH
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIR------------PS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~------------~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 79 (170)
-..+.+.|.++.|..=|++. ......-+ .. .....+..+...|+...+.....++.+-. +.|..
T Consensus 113 g~vllK~Gele~A~~DF~~v-l~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQV-LQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred chhhhhcccHHHHHHHHHHH-HhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence 34567889999999999988 65543111 11 12234556667789999999999998863 66888
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 038114 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 80 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
.|-.--++|...|.+..|..=++....... -++.++--+-..+-..|+.+.++...++..+.
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~---DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQ---DNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhccc---cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 898999999999999998765554433322 33455555556666778888888777777643
No 335
>PF13934 ELYS: Nuclear pore complex assembly
Probab=66.28 E-value=43 Score=23.57 Aligned_cols=104 Identities=15% Similarity=0.071 Sum_probs=56.1
Q ss_pred hHHHHHHHhhc--ccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHH
Q 038114 45 TYACLISTCSS--LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122 (170)
Q Consensus 45 ~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li 122 (170)
.|...+.++.- .++++.|.+.+ -+-.+.|+. -.-++.++.+.|+.+.|.++++.++-... .+ ..-..++
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L---~~ps~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~--~~~~~~~ 148 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELL---SHPSLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPLS--SP--EALTLYF 148 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHh---CCCCCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCCC--CH--HHHHHHH
Confidence 35566666643 34555555544 222233332 22467777778899999998888654333 12 2223333
Q ss_pred HHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhc
Q 038114 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161 (170)
Q Consensus 123 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~ 161 (170)
.. ...+.+.+|+.+-+...+.. ....+..++..+.
T Consensus 149 ~~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 149 VA-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HH-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 33 44478888877766554421 1344555555554
No 336
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=65.92 E-value=40 Score=26.92 Aligned_cols=118 Identities=19% Similarity=0.213 Sum_probs=64.6
Q ss_pred hhCCCCcchh---hHHHHHHHhhcccchHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccC-
Q 038114 35 NNTNFRIRPS---TYACLISTCSSLRSLQLGRKVHDHILSSKS---QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQR- 107 (170)
Q Consensus 35 ~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~- 107 (170)
-+++.-|+.. +-.+++.+.......++-..+|.......+ ..|...+...++-|.+.|.+.+-..+-..|+..
T Consensus 197 ~e~dLlP~IIsGsS~GaivAsl~~v~~~eEl~~Ll~~~~~~~~~if~dd~~n~~~~ikr~~~~G~~~Di~~l~~~~~~~~ 276 (543)
T KOG2214|consen 197 LEQDLLPNIISGSSAGAIVASLVGVRSNEELKQLLTNFLHSLFNIFQDDLGNLLTIIKRYFTQGALFDISHLACVMKKRL 276 (543)
T ss_pred HHccccchhhcCCchhHHHHHHHhhcchHHHHHHhccchHhhhhhhcCcchhHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 3444556554 234455555555556666666655544332 333445555666666666554443333322211
Q ss_pred ------------C--------------------CCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhH
Q 038114 108 ------------N--------------------VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTV 153 (170)
Q Consensus 108 ------------~--------------------~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~ 153 (170)
| ....||+..|+++..+|+-.|=++. ..++.+-....+.|-..++
T Consensus 277 ~~lTFqEAY~rTGrIlNItV~p~s~~e~P~lLNylTaPnVLIWSAV~aScs~pgif~~-~~Ll~Kd~t~ei~p~~~~~ 353 (543)
T KOG2214|consen 277 GNLTFQEAYDRTGRILNIVVPPSSKSEPPRLLNYLTAPNVLIWSAVCASCSVPGIFES-TPLLAKDLTNEIEPFIVTF 353 (543)
T ss_pred cchhHHHHHHhhCceEEEEECccccCCChhHhhccCCCceehhHHHHHhcccccccCc-cHHHHhhccCcEeeccCCc
Confidence 0 0037889999999999888776654 4455544555566655554
No 337
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=65.35 E-value=22 Score=26.54 Aligned_cols=58 Identities=12% Similarity=0.223 Sum_probs=45.6
Q ss_pred HHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcC
Q 038114 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162 (170)
Q Consensus 98 ~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~ 162 (170)
.++++.|...++ .|.-.+|..+...+++.=.+...+.+|+.+.....+ |..|+..||.
T Consensus 263 ~EL~~~L~~~~i--~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEI--HPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCC--CccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHH
Confidence 467888888888 888889888888888888899999999888765433 6666666653
No 338
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=65.23 E-value=45 Score=23.75 Aligned_cols=57 Identities=9% Similarity=0.063 Sum_probs=27.9
Q ss_pred HHHHHHcCCCHHHHHHHHhhcc----cCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHH
Q 038114 84 ILNMYGKCGSLEDARVVSDEMP----QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141 (170)
Q Consensus 84 li~~~~~~~~~~~a~~~~~~m~----~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 141 (170)
+-.-|.+.|+++.|.++|+.+. +.|.. .+...+...+..++.+.|+.+....+.-+|
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~-~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWW-SLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3344556666666666666542 11221 333344444455555555555555544443
No 339
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.14 E-value=76 Score=27.17 Aligned_cols=114 Identities=7% Similarity=0.081 Sum_probs=76.2
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhh----cccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCS----SLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYG 89 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 89 (170)
+..+.+...++.|+.+-+.- ..+..+...+...|+ +.|++++|...|-+-... +.| +.+|+-|.
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~------~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfL 408 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQ------HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFL 408 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhc
Confidence 44455555555555544333 355556666666654 568888888877766543 233 34566676
Q ss_pred cCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 90 KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
...+...--..++.+.+.|+ .+...-+.|+.+|.+.++.++-.++.+...
T Consensus 409 daq~IknLt~YLe~L~~~gl---a~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGL---ANSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred CHHHHHHHHHHHHHHHHccc---ccchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 66677777777888888887 555667788899988888888777776555
No 340
>PRK09857 putative transposase; Provisional
Probab=65.09 E-value=53 Score=24.18 Aligned_cols=88 Identities=15% Similarity=0.051 Sum_probs=54.4
Q ss_pred chHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHH
Q 038114 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137 (170)
Q Consensus 58 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l 137 (170)
++.+....+..+...+..++ ..+..++....+.++.++..++++...+. . ........++..-+...|.-+++.++
T Consensus 187 dl~~~~~~l~~ll~~~~~~~-~~~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~--~~~~e~iMTiAEqL~qeG~qe~~~~i 262 (292)
T PRK09857 187 DLMGLVEQMACLLSSGYAND-RQIKGLFNYILQTGDAVRFNDFIDGVAER-S--PKHKESLMTIAERLRQEGEQSKALHI 262 (292)
T ss_pred hHHHHHHHHHHHHHhccCCH-HHHHHHHHHHhhccccchHHHHHHHHHHh-C--ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333332333 33556776667777777777777766554 2 22334455677777777877888999
Q ss_pred HHHHHhCCCCCC
Q 038114 138 FSEMRDRELIPD 149 (170)
Q Consensus 138 ~~~m~~~~~~p~ 149 (170)
..+|...|+.++
T Consensus 263 a~~ml~~g~~~~ 274 (292)
T PRK09857 263 AKIMLESGVPLA 274 (292)
T ss_pred HHHHHHcCCCHH
Confidence 999999988766
No 341
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=64.89 E-value=40 Score=22.75 Aligned_cols=28 Identities=11% Similarity=0.087 Sum_probs=10.7
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 038114 64 KVHDHILSSKSQPDVVLQNYILNMYGKC 91 (170)
Q Consensus 64 ~~~~~m~~~~~~~~~~~~~~li~~~~~~ 91 (170)
.++..+.+.|+.-|..-=-+.|..-.+.
T Consensus 56 ~Vi~~l~~~~~ldD~~fAe~~i~~r~~~ 83 (174)
T COG2137 56 EVIDRLAEEGYLDDTRFAEAYIRSRSRK 83 (174)
T ss_pred HHHHHHHHcCcccHHHHHHHHHHHHHhc
Confidence 3333444444443333333333333333
No 342
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=64.88 E-value=27 Score=20.67 Aligned_cols=68 Identities=12% Similarity=0.008 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 038114 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99 (170)
Q Consensus 25 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 99 (170)
.+.++++.. ...|+ .+..-...+-.+-...|+.+.|.+++..+. .| +.-|..++.++-.+|.-..|.+
T Consensus 20 ~~~~v~d~l-l~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 20 KTRDVCDKC-LEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred hHHHHHHHH-HhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhhc
Confidence 345677777 66664 344444444444456688999999999997 54 4578999999999888776654
No 343
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=64.45 E-value=31 Score=21.19 Aligned_cols=88 Identities=16% Similarity=0.145 Sum_probs=58.9
Q ss_pred chHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHH
Q 038114 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137 (170)
Q Consensus 58 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l 137 (170)
..++|..+-+.+...+-. .-.+--+-+..+.+.|++++|..+.+.+. -||...|-++-. .+.|..+++..-
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~------~pdlepw~ALce--~rlGl~s~l~~r 90 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC------YPDLEPWLALCE--WRLGLGSALESR 90 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC------CchHHHHHHHHH--HhhccHHHHHHH
Confidence 356777777777655422 33333444556778899999999888773 588888877654 466777777777
Q ss_pred HHHHHhCCCCCCHhhHHH
Q 038114 138 FSEMRDRELIPDGLTVRS 155 (170)
Q Consensus 138 ~~~m~~~~~~p~~~t~~~ 155 (170)
+..|..+| .|...+|..
T Consensus 91 l~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 91 LNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHhCC-CHHHHHHHH
Confidence 77777776 445555443
No 344
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=64.21 E-value=32 Score=26.09 Aligned_cols=86 Identities=10% Similarity=-0.016 Sum_probs=50.1
Q ss_pred CccccchhHhH--HHhhhcc-cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCC-
Q 038114 2 IRNLKTQLRFT--FYNSQPI-QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD- 77 (170)
Q Consensus 2 ~~~~~~~~~~~--li~~~~~-~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~- 77 (170)
+++-.++.+|- -+..|++ .|+..+|.+.|+.+.++..+..-......||.+|....-+.++..++...-+-..+-+
T Consensus 267 ~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA 346 (556)
T KOG3807|consen 267 LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSA 346 (556)
T ss_pred hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchH
Confidence 44455666666 3666654 5899999999987724332211122345677777777777777777766655433333
Q ss_pred HHHHHH-HHHH
Q 038114 78 VVLQNY-ILNM 87 (170)
Q Consensus 78 ~~~~~~-li~~ 87 (170)
...|++ |+++
T Consensus 347 ~icYTaALLK~ 357 (556)
T KOG3807|consen 347 AICYTAALLKT 357 (556)
T ss_pred HHHHHHHHHHH
Confidence 344543 4443
No 345
>PRK11906 transcriptional regulator; Provisional
Probab=64.01 E-value=71 Score=25.25 Aligned_cols=138 Identities=13% Similarity=0.119 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHHHhhCCCCcchh-hHHHHHHHh--------hc-ccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 038114 22 LYNEALVAFDFLQNNTNFRIRPS-TYACLISTC--------SS-LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91 (170)
Q Consensus 22 ~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~--------~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 91 (170)
..+.|+.+|.+........|+-. .|..+-.++ .. ..+..+|.++-....+.+ .-|+.....+-.+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 34567778888722334444432 333332222 11 234556666666666665 44677777777777888
Q ss_pred CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHH-HHhCCCCCCHhhHHHHHHHhcCC
Q 038114 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE-MRDRELIPDGLTVRSLLCACTSP 163 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~-m~~~~~~p~~~t~~~ll~~~~~~ 163 (170)
++++.|..+|+.-...+.+ .++...|..++. .-.|+.++|.+.+++ ++-...+.-....-..++.|+..
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~--~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~ 421 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVH--FHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN 421 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHH--HHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC
Confidence 8899999999988766543 344444555544 456899999999998 44344444444444444455443
No 346
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=63.91 E-value=13 Score=25.64 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=18.5
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcccCCC
Q 038114 83 YILNMYGKCGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 83 ~li~~~~~~~~~~~a~~~~~~m~~~~~ 109 (170)
+++..|-+..+|.++.++++.|.+..+
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i 163 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQI 163 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555666677777777777777766655
No 347
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=63.75 E-value=59 Score=24.64 Aligned_cols=86 Identities=12% Similarity=0.181 Sum_probs=51.8
Q ss_pred HHHHHhhcccchHHHHHHHHHHHhc---CCCCCHHHHH--HHHHHHHcCCCHHHHHHHHhhccc-----CCCCCCCChhh
Q 038114 48 CLISTCSSLRSLQLGRKVHDHILSS---KSQPDVVLQN--YILNMYGKCGSLEDARVVSDEMPQ-----RNVIESPDLAS 117 (170)
Q Consensus 48 ~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~p~~~~ 117 (170)
.++...-+.++.++|.++++++.+. --.|+.+.|- .....+...|+.+++.+++++.+. .++ .|++++
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v--~~~Vh~ 157 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGV--TSNVHS 157 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCC--Chhhhh
Confidence 3444455566888888888888753 2355655554 445556667888888888887766 566 564443
Q ss_pred -HHHHH-HHHhCCCChHHHH
Q 038114 118 -WNAII-AGVASPSNANEAM 135 (170)
Q Consensus 118 -~~~li-~~~~~~g~~~~a~ 135 (170)
|..+- .-|-..|+++.+.
T Consensus 158 ~fY~lssqYyk~~~d~a~yY 177 (380)
T KOG2908|consen 158 SFYSLSSQYYKKIGDFASYY 177 (380)
T ss_pred hHHHHHHHHHHHHHhHHHHH
Confidence 33333 3333444554443
No 348
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=62.80 E-value=40 Score=26.68 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=44.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCC
Q 038114 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145 (170)
Q Consensus 81 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 145 (170)
...|+.-|.-.|++.+|.++.+++.-.-+ -..+.+-+++.+.-+.|+-...+.++++.-+.|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfF---hHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFF---HHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcc---hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 34667778888888888888887653333 234678888888888888777777777776665
No 349
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=62.55 E-value=40 Score=21.92 Aligned_cols=94 Identities=13% Similarity=-0.027 Sum_probs=68.2
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHH---HHHHc
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL---NMYGK 90 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li---~~~~~ 90 (170)
--+++..|+.+.|++.|.+. ... .+-....||.--.++--.|+.++|+.=+++..+-.-.-+...+.+.+ ..|-.
T Consensus 50 ~valaE~g~Ld~AlE~F~qa-l~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQA-LCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHH-HHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 34678899999999999987 432 23467789999999999999999999888887742222444444333 24666
Q ss_pred CCCHHHHHHHHhhcccCCC
Q 038114 91 CGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 91 ~~~~~~a~~~~~~m~~~~~ 109 (170)
.|+-+.|..=|+..-+.|.
T Consensus 128 ~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGS 146 (175)
T ss_pred hCchHHHHHhHHHHHHhCC
Confidence 7888888888887665554
No 350
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=62.43 E-value=54 Score=23.34 Aligned_cols=60 Identities=17% Similarity=0.021 Sum_probs=45.5
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhc----C-CCCCHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILSS----K-SQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 104 (170)
...-+-.-|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.+....+.-++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445556688899999999999988532 2 3566778888888999999998887775554
No 351
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=62.43 E-value=59 Score=23.79 Aligned_cols=131 Identities=11% Similarity=0.063 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHhhC-CC---CcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 038114 22 LYNEALVAFDFLQNNT-NF---RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97 (170)
Q Consensus 22 ~~~~a~~~~~~m~~~~-~~---~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 97 (170)
-...|.+.|+.. ... .- .+++..-..++....+.|..+....+++.... ..+...-..++.+.+...+.+..
T Consensus 145 ~~~~a~~~~~~~-~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~ 220 (324)
T PF11838_consen 145 CVAEARELFKAW-LDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELL 220 (324)
T ss_dssp HHHHHHHHHHHH-HHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHH
T ss_pred HHHHHHHHHHHH-hcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHH
Confidence 355778888877 543 22 45677778888888888887776667666664 33688889999999999999999
Q ss_pred HHHHhhcccCC-CCCCCChhhHHHHHHHHhCCCC--hHHHHHHHH----HHHhCCCCCCHhhHHHHHHHhc
Q 038114 98 RVVSDEMPQRN-VIESPDLASWNAIIAGVASPSN--ANEAMSLFS----EMRDRELIPDGLTVRSLLCACT 161 (170)
Q Consensus 98 ~~~~~~m~~~~-~~~~p~~~~~~~li~~~~~~g~--~~~a~~l~~----~m~~~~~~p~~~t~~~ll~~~~ 161 (170)
.++++.....+ + ++. .. ..++.++...+. .+.+.+.+. .+.+ ...++..+...++..+.
T Consensus 221 ~~~l~~~l~~~~v--~~~-d~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~-~~~~~~~~~~~~~~~~~ 286 (324)
T PF11838_consen 221 KRLLDLLLSNDKV--RSQ-DI-RYVLAGLASSNPVGRDLAWEFFKENWDAIIK-KFGTNSSALSRVIKSFA 286 (324)
T ss_dssp HHHHHHHHCTSTS---TT-TH-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHC-HC-TTSHCCHHHHHCCC
T ss_pred HHHHHHHcCCccc--ccH-HH-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHH-HhcCCChHHHHHHHHHh
Confidence 99999887765 4 333 33 444455553332 356655544 2222 23333335555555443
No 352
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=62.42 E-value=43 Score=23.00 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=33.5
Q ss_pred HHHHHHHHhhcccCCCCCCCC--hhh-----HHHHHHHHhCCCChHHHHHHHHHHHhC
Q 038114 94 LEDARVVSDEMPQRNVIESPD--LAS-----WNAIIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 94 ~~~a~~~~~~m~~~~~~~~p~--~~~-----~~~li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
++.|..+++.+.+.-. .|. ... --..+..|.+.|.+++|.+++++....
T Consensus 85 LESAl~v~~~I~~E~~--~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 85 LESALMVLESIEKEFS--LPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC
Confidence 5778888887765433 231 111 223357899999999999999998763
No 353
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=62.02 E-value=12 Score=15.56 Aligned_cols=26 Identities=8% Similarity=0.104 Sum_probs=17.8
Q ss_pred hHHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 117 SWNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 117 ~~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
.|..+-..+...|+++.|...|....
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45566666777777777777776554
No 354
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=61.72 E-value=18 Score=22.15 Aligned_cols=45 Identities=4% Similarity=0.058 Sum_probs=21.8
Q ss_pred HHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCH
Q 038114 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSL 94 (170)
Q Consensus 50 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 94 (170)
+......+..-.|.++++.+.+.+..++..|--.-|+.+...|-+
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 333333344445556666665555444444433334555555543
No 355
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=61.60 E-value=14 Score=16.30 Aligned_cols=16 Identities=6% Similarity=0.146 Sum_probs=7.5
Q ss_pred cccchHHHHHHHHHHH
Q 038114 55 SLRSLQLGRKVHDHIL 70 (170)
Q Consensus 55 ~~~~~~~a~~~~~~m~ 70 (170)
+.|++++|.+.|+.+.
T Consensus 12 ~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 12 KLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 3444444444444444
No 356
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=61.21 E-value=32 Score=20.32 Aligned_cols=63 Identities=14% Similarity=0.189 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHH
Q 038114 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134 (170)
Q Consensus 62 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 134 (170)
...++..+.+.|+- +...+..+- +..-+.+.+.++++.+..+|. ..|..+..++-..+....|
T Consensus 22 ~~~v~~~L~~~gvl-t~~~~~~I~---~~~t~~~k~~~Lld~L~~RG~------~AF~~F~~aL~~~~~~~La 84 (90)
T cd08332 22 LDELLIHLLQKDIL-TDSMAESIM---AKPTSFSQNVALLNLLPKRGP------RAFSAFCEALRETSQEHLC 84 (90)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHH---cCCCcHHHHHHHHHHHHHhCh------hHHHHHHHHHHhcChHHHH
Confidence 44577777777643 333333332 233467888888888888888 7888888888665654444
No 357
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=61.13 E-value=31 Score=20.13 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=42.2
Q ss_pred HHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCc
Q 038114 97 ARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165 (170)
Q Consensus 97 a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 165 (170)
...++..+.+.|+ .|-...-..-+..-+.+++..+++.+...| ...|..+.+++...|.
T Consensus 18 ~~~v~~~L~~~~V------lt~~~~e~I~~~~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 18 PKYLWDHLLSRGV------FTPDMIEEIQAAGSRRDQARQLLIDLETRG----KQAFPAFLSALRETGQ 76 (84)
T ss_pred HHHHHHHHHhcCC------CCHHHHHHHHcCCCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCc
Confidence 3457778888888 455544444456677999999999998886 5577777777766554
No 358
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=61.09 E-value=20 Score=23.26 Aligned_cols=43 Identities=7% Similarity=0.111 Sum_probs=34.2
Q ss_pred hHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHh
Q 038114 117 SWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160 (170)
Q Consensus 117 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~ 160 (170)
|...++.+ .+.|-..+...++++|.++|+..+..+|+-+++-.
T Consensus 112 tlGvL~~a-k~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 112 TLGVLALA-KSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred hhHHHHHH-HHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 44555544 45588999999999999999999999999888754
No 359
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=61.01 E-value=37 Score=21.04 Aligned_cols=79 Identities=18% Similarity=0.180 Sum_probs=44.7
Q ss_pred chHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHH
Q 038114 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137 (170)
Q Consensus 58 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l 137 (170)
..++|..+.+.+...+- -...+--+-+..+.+.|++++|+..=.... -||...|-++-. .+.|-.+++...
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~------~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHC------YPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--------GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCC------CccHHHHHHHHH--HhhccHHHHHHH
Confidence 46777778887777653 233344444555677888888832222211 466666655543 466777777777
Q ss_pred HHHHHhCC
Q 038114 138 FSEMRDRE 145 (170)
Q Consensus 138 ~~~m~~~~ 145 (170)
+..+..+|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 77776655
No 360
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=60.88 E-value=23 Score=26.21 Aligned_cols=36 Identities=11% Similarity=0.037 Sum_probs=21.8
Q ss_pred cchhh-HHHHHHHhhcccchHHHHHHHHHHHhcCCCC
Q 038114 41 IRPST-YACLISTCSSLRSLQLGRKVHDHILSSKSQP 76 (170)
Q Consensus 41 p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 76 (170)
|+..+ |+..|....+.|++++|+++.++.++.|+.-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 44443 4566666666666666666666666666543
No 361
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=60.76 E-value=37 Score=20.85 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhccc
Q 038114 80 LQNYILNMYGKCGSLEDARVVSDEMPQ 106 (170)
Q Consensus 80 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 106 (170)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 688999999999999999999998776
No 362
>COG0819 TenA Putative transcription activator [Transcription]
Probab=60.33 E-value=57 Score=22.94 Aligned_cols=90 Identities=11% Similarity=0.039 Sum_probs=51.8
Q ss_pred HhcCCCCCHHHHHHHHHHHHcCCCHHHHHH-----------HHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHH
Q 038114 70 LSSKSQPDVVLQNYILNMYGKCGSLEDARV-----------VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138 (170)
Q Consensus 70 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~-----------~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~ 138 (170)
.+....|....|+..|...+..|++.+... +-..+.+... .+....|-..|..|+...--+.+..+.
T Consensus 101 ~~~~~~~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~--~~~~~~Y~~Wi~~Y~s~ef~~~v~~~~ 178 (218)
T COG0819 101 LKTEPSPANKAYTRYLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKPR--ASPNPPYQEWIDTYASEEFQEAVEELE 178 (218)
T ss_pred HhcCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccc--cCCCCcHHHHHHHcCCHHHHHHHHHHH
Confidence 344557778899999999999998766442 2223333333 345578999999988744333333333
Q ss_pred HHHHhCCCCCCHhhHHHHHHHhc
Q 038114 139 SEMRDRELIPDGLTVRSLLCACT 161 (170)
Q Consensus 139 ~~m~~~~~~p~~~t~~~ll~~~~ 161 (170)
+.+-+.+-.-+..-+.-|.+.+.
T Consensus 179 ~~ld~~~~~~~~~~~~~l~~iF~ 201 (218)
T COG0819 179 ALLDSLAENSSEEELEKLKQIFL 201 (218)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 33333333334444444444443
No 363
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=59.60 E-value=12 Score=20.64 Aligned_cols=17 Identities=18% Similarity=0.004 Sum_probs=9.2
Q ss_pred CCHHHHHHHHhhcccCC
Q 038114 92 GSLEDARVVSDEMPQRN 108 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~~ 108 (170)
.+++.|...|.+++..|
T Consensus 39 Wd~~~Al~~F~~lk~~~ 55 (63)
T smart00804 39 WDYERALKNFTELKSEG 55 (63)
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 35555555555555443
No 364
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=59.58 E-value=39 Score=25.13 Aligned_cols=59 Identities=7% Similarity=-0.046 Sum_probs=45.2
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 104 (170)
+++..-+.|..+|.+.+|.++.+..+... +.+...|-.|+..+...|+-=.|.+=++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34555677888999999999999888765 667888999999999999854444444433
No 365
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=59.45 E-value=34 Score=20.10 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHhhccc-CCCCCCCChhhHHHHHHHHhCCCChHHH
Q 038114 91 CGSLEDARVVSDEMPQ-RNVIESPDLASWNAIIAGVASPSNANEA 134 (170)
Q Consensus 91 ~~~~~~a~~~~~~m~~-~~~~~~p~~~~~~~li~~~~~~g~~~~a 134 (170)
.|+.+.|..++..+.. .+. ..|..++.++-..|.-..|
T Consensus 47 ~g~~~aa~~Ll~~L~~~r~~------~wf~~Fl~AL~~~g~~~la 85 (88)
T cd08812 47 KGNIAAAEELLDRLERCDKP------GWFQAFLDALRRTGNDDLA 85 (88)
T ss_pred cChHHHHHHHHHHHHHhccC------CcHHHHHHHHHHcCCccHH
Confidence 3677777777777765 444 4677777777766654444
No 366
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=59.10 E-value=75 Score=23.90 Aligned_cols=45 Identities=4% Similarity=0.039 Sum_probs=24.0
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhh----CCCCcchhhHHHHHHHhhccc
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNN----TNFRIRPSTYACLISTCSSLR 57 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~----~~~~p~~~~~~~li~~~~~~~ 57 (170)
+...+....+++.....+++-.-. .-++|+..+-...-..+...|
T Consensus 189 lFk~~~~Ek~i~~lis~Lrkg~md~rLmeffPpnkrs~E~Fak~Ft~ag 237 (412)
T KOG2297|consen 189 LFKEWLVEKDINDLISSLRKGKMDDRLMEFFPPNKRSVEHFAKYFTDAG 237 (412)
T ss_pred HHHHHHhhccHHHHHHHHHhcChHhHHHHhcCCcchhHHHHHHHHhHhh
Confidence 455666666666666665543111 125666666555555554444
No 367
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=58.38 E-value=51 Score=21.75 Aligned_cols=54 Identities=11% Similarity=-0.012 Sum_probs=41.7
Q ss_pred cccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcC
Q 038114 18 PIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK 73 (170)
Q Consensus 18 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 73 (170)
...+.++++..+++.|+.-+--.|...+|-..|.. ..|++++|.++|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i--~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLI--ARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHH--HcCCHHHHHHHHHhhhccC
Confidence 44899999999999994333334555577776654 7799999999999998875
No 368
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=57.99 E-value=39 Score=23.76 Aligned_cols=82 Identities=11% Similarity=0.121 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhhCCCC-------cchhhHHHHHHHhhcccc---------hHHHHHHHHHHHhcCCCC-CHHHHHHHH
Q 038114 23 YNEALVAFDFLQNNTNFR-------IRPSTYACLISTCSSLRS---------LQLGRKVHDHILSSKSQP-DVVLQNYIL 85 (170)
Q Consensus 23 ~~~a~~~~~~m~~~~~~~-------p~~~~~~~li~~~~~~~~---------~~~a~~~~~~m~~~~~~~-~~~~~~~li 85 (170)
.+.|..++..| .-..++ -...-|..+-.+|++.|- .+....+++..++.|++. =++.|+++|
T Consensus 137 vetAiaml~dm-G~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 137 IETAIAMLKDM-GGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred HHHHHHHHHHc-CCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 45677777777 443332 133457788888887763 455556666666666532 245677777
Q ss_pred HHHHcCCCHHHHHHHHhhcc
Q 038114 86 NMYGKCGSLEDARVVSDEMP 105 (170)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~ 105 (170)
+--.-.-++++..++|..++
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 66555556777777666554
No 369
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=57.81 E-value=42 Score=20.62 Aligned_cols=80 Identities=11% Similarity=0.002 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 038114 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVS 101 (170)
Q Consensus 22 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 101 (170)
..++|..+-+.+ ...+-. ...+--+-+....+.|++++|..+.+.+ ..||...|-+|- -.|.|..+.+..-+
T Consensus 20 cHqEA~tIAdwL-~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWL-HLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHH-hcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHH
Confidence 456777777777 544322 2223333345567788888888777665 478888777763 34566667666666
Q ss_pred hhcccCCC
Q 038114 102 DEMPQRNV 109 (170)
Q Consensus 102 ~~m~~~~~ 109 (170)
..|...|-
T Consensus 92 ~rla~sg~ 99 (115)
T TIGR02508 92 NRLAASGD 99 (115)
T ss_pred HHHHhCCC
Confidence 66666655
No 370
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=57.62 E-value=88 Score=24.24 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=37.1
Q ss_pred hcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhc----cc----------CCCCCCCChhhHHHHHHHHhCCCChH
Q 038114 71 SSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM----PQ----------RNVIESPDLASWNAIIAGVASPSNAN 132 (170)
Q Consensus 71 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~----------~~~~~~p~~~~~~~li~~~~~~g~~~ 132 (170)
+.|...|...+-..++.+...-.+++|.+--... .. .+....||+..|+++...|+..+-+.
T Consensus 179 ~~G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~a~p~~~~ 254 (391)
T cd07229 179 REGYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASNASSAALY 254 (391)
T ss_pred cCCCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHcCCccccC
Confidence 3455556666666666655555566666332211 00 01113789999999999988877665
No 371
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=57.13 E-value=28 Score=25.52 Aligned_cols=28 Identities=18% Similarity=0.031 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 038114 78 VVLQNYILNMYGKCGSLEDARVVSDEMP 105 (170)
Q Consensus 78 ~~~~~~li~~~~~~~~~~~a~~~~~~m~ 105 (170)
...-..-|+.....|++..|.++..+..
T Consensus 127 v~~~~~~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 127 VQQTQSRLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3444455666667777777777766554
No 372
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=56.98 E-value=1e+02 Score=24.86 Aligned_cols=86 Identities=10% Similarity=0.111 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHH--------------HHH
Q 038114 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN--------------MYG 89 (170)
Q Consensus 24 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~--------------~~~ 89 (170)
+.....++.+-.+.|+..+...+..+.++ ..|...++..++++....|- +..+...+-. -..
T Consensus 181 ~~I~~~L~~i~~~E~I~~e~~aL~~ia~~--a~Gs~RDalslLDq~i~~~~--~~It~~~v~~~lG~~~~~~~~~~~~~i 256 (515)
T COG2812 181 EEIAKHLAAILDKEGINIEEDALSLIARA--AEGSLRDALSLLDQAIAFGE--GEITLESVRDMLGLTDIEKLLSLLEAI 256 (515)
T ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHHHH--cCCChhhHHHHHHHHHHccC--CcccHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45566666664678888888888777666 56888999999999987752 2222222221 122
Q ss_pred cCCCHHHHHHHHhhcccCCCCCCCCh
Q 038114 90 KCGSLEDARVVSDEMPQRNVIESPDL 115 (170)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~~~~~~p~~ 115 (170)
-.++..++...++++.+.|. .|..
T Consensus 257 ~~~d~~~~~~~~~~l~~~G~--~~~~ 280 (515)
T COG2812 257 LKGDAKEALRLINELIEEGK--DPEA 280 (515)
T ss_pred HccCHHHHHHHHHHHHHhCc--CHHH
Confidence 45788999999999998887 5554
No 373
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=56.91 E-value=73 Score=23.09 Aligned_cols=136 Identities=10% Similarity=0.006 Sum_probs=80.4
Q ss_pred hHhHHHhhhcccC-CHHHHHHHHHHHHhh--------CCCCcch-----hhHHHHHHHhhcccchH---HHHHHHHHHHh
Q 038114 9 LRFTFYNSQPIQN-LYNEALVAFDFLQNN--------TNFRIRP-----STYACLISTCSSLRSLQ---LGRKVHDHILS 71 (170)
Q Consensus 9 ~~~~li~~~~~~~-~~~~a~~~~~~m~~~--------~~~~p~~-----~~~~~li~~~~~~~~~~---~a~~~~~~m~~ 71 (170)
+.|++.......+ +++.|...+++. -. ....|+. .++..+..++...+..+ .|.++.+.+..
T Consensus 37 ~~yn~G~~l~~~~~~~~~a~~wL~~a-~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~ 115 (278)
T PF08631_consen 37 VCYNIGKSLLSKKDKYEEAVKWLQRA-YDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLES 115 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHH-HHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 3466655555666 888776666554 21 1233333 25667777777766654 55556666644
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHH---hCCCChHHHHHHHHHHHhCCCCC
Q 038114 72 SKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGV---ASPSNANEAMSLFSEMRDRELIP 148 (170)
Q Consensus 72 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~---~~~g~~~~a~~l~~~m~~~~~~p 148 (170)
.. .-.+.++-.-|+.+.+.++.+++.+++..|...-. .....+..++..+ ... ....|...+..+....+.|
T Consensus 116 e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~---~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~ 190 (278)
T PF08631_consen 116 EY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD---HSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKS 190 (278)
T ss_pred hC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc---cccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCC
Confidence 32 22355666667777788999999999999886522 1223444444333 443 3456666666666655555
Q ss_pred CH
Q 038114 149 DG 150 (170)
Q Consensus 149 ~~ 150 (170)
..
T Consensus 191 ~~ 192 (278)
T PF08631_consen 191 SE 192 (278)
T ss_pred Ch
Confidence 54
No 374
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=56.69 E-value=43 Score=20.33 Aligned_cols=24 Identities=8% Similarity=-0.119 Sum_probs=14.2
Q ss_pred HHHHHHhhcccchHHHHHHHHHHH
Q 038114 47 ACLISTCSSLRSLQLGRKVHDHIL 70 (170)
Q Consensus 47 ~~li~~~~~~~~~~~a~~~~~~m~ 70 (170)
..++.-|...+++++|.+-+.++.
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhC
Confidence 345555566666666666666654
No 375
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=56.60 E-value=35 Score=19.35 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=9.7
Q ss_pred HHHHHHcCCCHHHHHHHHh
Q 038114 84 ILNMYGKCGSLEDARVVSD 102 (170)
Q Consensus 84 li~~~~~~~~~~~a~~~~~ 102 (170)
.+...+..|+.+-+..+++
T Consensus 29 ~l~~A~~~~~~~~~~~Ll~ 47 (89)
T PF12796_consen 29 ALHYAAENGNLEIVKLLLE 47 (89)
T ss_dssp HHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 4445555566554444444
No 376
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=56.47 E-value=43 Score=26.13 Aligned_cols=118 Identities=8% Similarity=-0.026 Sum_probs=72.1
Q ss_pred ccCCHHHHHHHHHHHHhhCCCCcchhhHHH---HHHH----------hhcccchHHHHHHHHHHHhc---CCCCCHHHHH
Q 038114 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYAC---LIST----------CSSLRSLQLGRKVHDHILSS---KSQPDVVLQN 82 (170)
Q Consensus 19 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~---li~~----------~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~ 82 (170)
-+++.+.+...|++. .. .-|+...-.+ .... ..+.|.+..|.+.|.+-... +..++...|-
T Consensus 215 y~~~~~ka~~hf~qa-l~--ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~ 291 (486)
T KOG0550|consen 215 YNDNADKAINHFQQA-LR--LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYG 291 (486)
T ss_pred cccchHHHHHHHhhh-hc--cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHH
Confidence 345666666667666 22 2233332222 2222 23668889999999888763 5567777888
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHH--HHHhCCCChHHHHHHHHHHHhC
Q 038114 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII--AGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 83 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li--~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
..-.+..+.|++.+|..-.++...-+. ....-.+. .++.-.+.|+.|.+-++...+.
T Consensus 292 nra~v~~rLgrl~eaisdc~~Al~iD~-----syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 292 NRALVNIRLGRLREAISDCNEALKIDS-----SYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HhHhhhcccCCchhhhhhhhhhhhcCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888899999999988877654322 11222222 3333346777777777765543
No 377
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.40 E-value=1.4e+02 Score=25.92 Aligned_cols=118 Identities=10% Similarity=0.057 Sum_probs=64.1
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhcC--CC-CCHHHHHHHHHHHHcCCCH--HHHHHHHhhccc----CCCC--CC-
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILSSK--SQ-PDVVLQNYILNMYGKCGSL--EDARVVSDEMPQ----RNVI--ES- 112 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~-~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~----~~~~--~~- 112 (170)
-|..|+..|...|+.++|+++|.+....- .. .-..-+--++..+.+.+.. +.+++.-+-..+ .|+. ..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 46778888888888888888888886621 01 1111222244444444432 333332222211 1110 00
Q ss_pred -C-ChhhHH-HHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcC
Q 038114 113 -P-DLASWN-AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162 (170)
Q Consensus 113 -p-~~~~~~-~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~ 162 (170)
+ ...+.+ .-+-.|......+.+..+++.+....-.++..-.+.++..|..
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 0 001111 1234556667788888889888887777777777777777753
No 378
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=55.10 E-value=68 Score=22.21 Aligned_cols=97 Identities=11% Similarity=-0.012 Sum_probs=54.6
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHhc--CCCCCHHHHHHHHH-HHHcCCC--HHHHHHHHhhcccCCCCCCCC--hhhH
Q 038114 46 YACLISTCSSLRSLQLGRKVHDHILSS--KSQPDVVLQNYILN-MYGKCGS--LEDARVVSDEMPQRNVIESPD--LASW 118 (170)
Q Consensus 46 ~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~-~~~~~~~--~~~a~~~~~~m~~~~~~~~p~--~~~~ 118 (170)
++...-...-.|++++|..-++.+.+. .+.--...|..+.. +++..+. +-+|.-++.-.....+. .|+ -+.+
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~p-s~~EL~V~~ 110 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLP-SPEELGVPP 110 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCC-CHHHcCCCH
Confidence 333333344456777777777666542 12222345555555 5666654 66777777776665542 111 0122
Q ss_pred HHHHHHH--------------hCCCChHHHHHHHHHHHh
Q 038114 119 NAIIAGV--------------ASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 119 ~~li~~~--------------~~~g~~~~a~~l~~~m~~ 143 (170)
-..|.|. .+.|+++.|.++++-|..
T Consensus 111 ~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 111 IAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 2233333 567999999999888863
No 379
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=55.08 E-value=28 Score=22.67 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=19.5
Q ss_pred HHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038114 122 IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158 (170)
Q Consensus 122 i~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~ 158 (170)
|..+...+.+..+.++.+.+.+.|+..+..|....++
T Consensus 7 i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~ 43 (146)
T TIGR01529 7 IKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLR 43 (146)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 3344444555555555555555555555555554444
No 380
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=53.92 E-value=89 Score=24.86 Aligned_cols=77 Identities=9% Similarity=-0.003 Sum_probs=50.0
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHH
Q 038114 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGV 125 (170)
Q Consensus 46 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~ 125 (170)
...|+.-|...|+..+|.+..+++-- .+--+..++-+++.+.-+.++-+..+.++++.-..|. .|-|-|-.+|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgm-PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl------IT~nQMtkGf 584 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGM-PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL------ITTNQMTKGF 584 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCC-CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc------eeHHHhhhhh
Confidence 34566666667777776666665532 1223456777777777777777777777777666666 5777777777
Q ss_pred hCCC
Q 038114 126 ASPS 129 (170)
Q Consensus 126 ~~~g 129 (170)
.|..
T Consensus 585 ~RV~ 588 (645)
T KOG0403|consen 585 ERVY 588 (645)
T ss_pred hhhh
Confidence 6543
No 381
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=52.90 E-value=20 Score=26.92 Aligned_cols=35 Identities=11% Similarity=-0.032 Sum_probs=25.4
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYA 47 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 47 (170)
+++.|.++|++++|+++....++-..--|+.....
T Consensus 112 Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~ 146 (338)
T PF04124_consen 112 LMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVK 146 (338)
T ss_pred HHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHH
Confidence 79999999999999999988743333345544443
No 382
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=52.88 E-value=1.5e+02 Score=25.49 Aligned_cols=83 Identities=14% Similarity=0.213 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcC---C----------CCCHHHHHHHHHHHHc
Q 038114 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK---S----------QPDVVLQNYILNMYGK 90 (170)
Q Consensus 24 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~----------~~~~~~~~~li~~~~~ 90 (170)
++..+.++++....|+..+......+.+.. .|+...++.++++....+ + .+|......++..+.
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~A--~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~- 257 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARAA--QGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALA- 257 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 345555555435567777777776666654 477788888777655332 1 233334445555443
Q ss_pred CCCHHHHHHHHhhcccCCC
Q 038114 91 CGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 91 ~~~~~~a~~~~~~m~~~~~ 109 (170)
.++...++.+++++...|.
T Consensus 258 ~~d~~~~l~~~~~l~~~g~ 276 (830)
T PRK07003 258 AGDGPEILAVADEMALRSL 276 (830)
T ss_pred cCCHHHHHHHHHHHHHhCC
Confidence 4788888888888887776
No 383
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=52.17 E-value=20 Score=22.21 Aligned_cols=45 Identities=7% Similarity=0.100 Sum_probs=21.1
Q ss_pred HHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 038114 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS 93 (170)
Q Consensus 49 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 93 (170)
++......+..-.|.++++.+.+.+...+..|.=.-|+.+...|-
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 344444444455566666666655555554432223355555554
No 384
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=51.57 E-value=61 Score=20.58 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHh
Q 038114 62 GRKVHDHILSSKSQPD-VVLQNYILNMYGKCGSLEDARVVSD 102 (170)
Q Consensus 62 a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~ 102 (170)
...+|..|.+.|+.-. ...|-..-..+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445555555554333 3344444455555555555555554
No 385
>PRK09462 fur ferric uptake regulator; Provisional
Probab=51.41 E-value=64 Score=20.84 Aligned_cols=62 Identities=6% Similarity=0.142 Sum_probs=40.3
Q ss_pred HHHHhhCCCCcchhhHHHHHHHhhc-ccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCH
Q 038114 31 DFLQNNTNFRIRPSTYACLISTCSS-LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSL 94 (170)
Q Consensus 31 ~~m~~~~~~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 94 (170)
+.+ +..|.+++..-. .++..... .+..-.|.++++.+.+.+...+..|-=.-|+.+...|-+
T Consensus 6 ~~l-~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TAL-KKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHH-HHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 446 777888777533 33444443 345778899999999887766655444444777776654
No 386
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=50.96 E-value=41 Score=21.93 Aligned_cols=42 Identities=10% Similarity=0.102 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHH
Q 038114 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124 (170)
Q Consensus 80 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~ 124 (170)
|...++.+. +.|-..+...+.++|.+.|+ ..+...|+.++.-
T Consensus 112 tlGvL~~ak-~kgLisk~Kpild~LI~~GF--~iS~~~~eeiL~~ 153 (157)
T COG2405 112 TLGVLALAK-SKGLISKDKPILDELIEKGF--RISRSILEEILRK 153 (157)
T ss_pred hhHHHHHHH-HcCcccchHHHHHHHHHhcC--cccHHHHHHHHHH
Confidence 444444333 33455556666666666666 6666666665543
No 387
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=50.65 E-value=82 Score=21.84 Aligned_cols=28 Identities=7% Similarity=0.126 Sum_probs=17.9
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhc
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILSS 72 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 72 (170)
..+.+++.|.-.|+++.|.++|.-+...
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 4556666666666666666666666654
No 388
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=50.47 E-value=54 Score=27.33 Aligned_cols=59 Identities=10% Similarity=0.117 Sum_probs=29.2
Q ss_pred hhhHHHHHHHhhcccchH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 038114 43 PSTYACLISTCSSLRSLQ--LGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104 (170)
Q Consensus 43 ~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 104 (170)
.-.+++.=.+|.+..+.. +...-++++++.|-.|+..... ..++-.|.+.+|-++|.+-
T Consensus 598 AL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA---~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 598 ALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLA---DVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred hhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHH---HHHHhhhhHHHHHHHHHHc
Confidence 334555555555544432 2223344555556566554332 2344455666666666653
No 389
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=50.32 E-value=1.4e+02 Score=24.27 Aligned_cols=149 Identities=8% Similarity=0.037 Sum_probs=73.5
Q ss_pred HhHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038114 10 RFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYG 89 (170)
Q Consensus 10 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 89 (170)
.|..+-...+.=+.+...+++.++ ... + ...+..++.+....|-......+.+.+....+. +...-..+.....
T Consensus 312 ~f~~lv~~lR~~~~e~l~~l~~~~-~~~---~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~-~~ea~~~~~~~~~ 385 (574)
T smart00638 312 KFLRLVRLLRTLSEEQLEQLWRQL-YEK---K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT-PLEAAQLLAVLPH 385 (574)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-HhC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHH
Confidence 344344444555667777777777 321 1 567778888888888666666665555554433 2333333333322
Q ss_pred --cCCCHHHHHHHHhhcccCCCCCCCC-------hhhHHHHHHHHhCCCCh------HHHHHHHHHHHhCC-CCCCHhhH
Q 038114 90 --KCGSLEDARVVSDEMPQRNVIESPD-------LASWNAIIAGVASPSNA------NEAMSLFSEMRDRE-LIPDGLTV 153 (170)
Q Consensus 90 --~~~~~~~a~~~~~~m~~~~~~~~p~-------~~~~~~li~~~~~~g~~------~~a~~l~~~m~~~~-~~p~~~t~ 153 (170)
+.-..+-...+++-+..... ++. ..+|..++..+|..... ++....+.+..... -.-|..--
T Consensus 386 ~~~~Pt~~~l~~l~~l~~~~~~--~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 463 (574)
T smart00638 386 TARYPTEEILKALFELAESPEV--QKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEI 463 (574)
T ss_pred hhhcCCHHHHHHHHHHhcCccc--cccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchhe
Confidence 23344444444444444444 444 34566666655555431 23333333222211 11233334
Q ss_pred HHHHHHhcCCCcc
Q 038114 154 RSLLCACTSPSNV 166 (170)
Q Consensus 154 ~~ll~~~~~~g~~ 166 (170)
...|++.+..|..
T Consensus 464 ~~~LkaLGN~g~~ 476 (574)
T smart00638 464 QLYLKALGNAGHP 476 (574)
T ss_pred eeHHHhhhccCCh
Confidence 5556666666554
No 390
>TIGR03236 dnd_assoc_1 dnd system-associated protein 1. A DNA sulfur modification system, dnd (degradation during electrophoresis), is sparsely and sporadically distributed among the bacteria. Members of this protein family are strictly limited to species with the dnd operon, and are found close to the dnd operon on the chromosomes of Bacillus cereus E33L, Hahella chejuensis KCTC 2396, and Pseudoalteromonas haloplanktis TAC12.
Probab=49.83 E-value=56 Score=24.89 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=31.7
Q ss_pred HHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHH
Q 038114 48 CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96 (170)
Q Consensus 48 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 96 (170)
.|-..|+...+--.-.++|.+..++|+-.|..+=..+|..|-+.|.++.
T Consensus 301 LLT~l~Vg~~~Kl~l~~L~~eFekRGvffD~~SkqeiI~fyEkin~lEK 349 (363)
T TIGR03236 301 LLTNLAVGEREKLPLNRLIEEFSKRGVAFDRQSQQMLIEFYERHGNLER 349 (363)
T ss_pred HHHHHHhCCcccchHHHHHHHHHhcCceeCchhHHHHHHHHHHhCcccc
Confidence 3334444444444556677777777777777777777777777666554
No 391
>PHA02875 ankyrin repeat protein; Provisional
Probab=48.76 E-value=1e+02 Score=23.49 Aligned_cols=15 Identities=7% Similarity=0.171 Sum_probs=6.3
Q ss_pred HHHcCCCHHHHHHHH
Q 038114 87 MYGKCGSLEDARVVS 101 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~ 101 (170)
..+..|+.+-+..++
T Consensus 141 ~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 141 LAVMMGDIKGIELLI 155 (413)
T ss_pred HHHHcCCHHHHHHHH
Confidence 333444444443333
No 392
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=48.72 E-value=1e+02 Score=22.48 Aligned_cols=87 Identities=9% Similarity=0.071 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHH
Q 038114 59 LQLGRKVHDHILSSKS----QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134 (170)
Q Consensus 59 ~~~a~~~~~~m~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 134 (170)
.+.+.+.|+.+...+. .+++..-..++....+.|+.+.-..+++.... .++..--..++.+.+...+.+..
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~-----~~~~~~k~~~l~aLa~~~d~~~~ 220 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN-----STSPEEKRRLLSALACSPDPELL 220 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT-----TSTHHHHHHHHHHHTT-S-HHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc-----cCCHHHHHHHHHhhhccCCHHHH
Confidence 6777888888877422 45677778888888889887665555555543 34567788999999999999999
Q ss_pred HHHHHHHHhCC-CCCCH
Q 038114 135 MSLFSEMRDRE-LIPDG 150 (170)
Q Consensus 135 ~~l~~~m~~~~-~~p~~ 150 (170)
.++++.....+ +++..
T Consensus 221 ~~~l~~~l~~~~v~~~d 237 (324)
T PF11838_consen 221 KRLLDLLLSNDKVRSQD 237 (324)
T ss_dssp HHHHHHHHCTSTS-TTT
T ss_pred HHHHHHHcCCcccccHH
Confidence 99999888865 44433
No 393
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=48.67 E-value=1.4e+02 Score=23.81 Aligned_cols=110 Identities=13% Similarity=0.050 Sum_probs=69.8
Q ss_pred hhcccCCHHHHHHHHHHHH--------hhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038114 16 SQPIQNLYNEALVAFDFLQ--------NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNM 87 (170)
Q Consensus 16 ~~~~~~~~~~a~~~~~~m~--------~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 87 (170)
.|...|++-...+++-+-. ....+.||..+.|.+-..++..-..+-...+|+-..+.+-+.=+.....+|-.
T Consensus 148 dcrpkg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLi 227 (669)
T KOG3636|consen 148 DCRPKGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLALIILI 227 (669)
T ss_pred CCCCCCccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhc
Confidence 4556666665555443321 34668899999998888888888888899999988887633323222222221
Q ss_pred H-------HcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhC
Q 038114 88 Y-------GKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127 (170)
Q Consensus 88 ~-------~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~ 127 (170)
- .+...-+++.+.++.|...-- --|+.-|-.+..-|+.
T Consensus 228 Nake~ILq~~sdsKEe~ikfLenmp~~L~--~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 228 NAKEEILQVKSDSKEEAIKFLENMPAQLS--VEDVPDFFSLAQYYSD 272 (669)
T ss_pred ccHHHHhhhccccHHHHHHHHHcCchhcc--cccchhHHHHHHHHhh
Confidence 1 234557889999999985422 2455556666655543
No 394
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=48.61 E-value=66 Score=20.15 Aligned_cols=24 Identities=8% Similarity=-0.028 Sum_probs=11.2
Q ss_pred HHHhhcccchHHHHHHHHHHHhcC
Q 038114 50 ISTCSSLRSLQLGRKVHDHILSSK 73 (170)
Q Consensus 50 i~~~~~~~~~~~a~~~~~~m~~~~ 73 (170)
|....++...++|+++.+.|.+.|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 333334444455555555555444
No 395
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=48.36 E-value=1.7e+02 Score=24.78 Aligned_cols=83 Identities=11% Similarity=0.034 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcC---C----------CCCHHHHHHHHHHHHc
Q 038114 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK---S----------QPDVVLQNYILNMYGK 90 (170)
Q Consensus 24 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~----------~~~~~~~~~li~~~~~ 90 (170)
++....+.+.-...|+..+......+++.. .|+...+..++++....| + ..+......|+.++.+
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~ 258 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN 258 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc
Confidence 444555554436678888888888887775 488888888887766532 1 1133344455555555
Q ss_pred CCCHHHHHHHHhhcccCCC
Q 038114 91 CGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 91 ~~~~~~a~~~~~~m~~~~~ 109 (170)
++...++.+++++...|.
T Consensus 259 -~d~~~al~~l~~L~~~G~ 276 (709)
T PRK08691 259 -QDGAALLAKAQEMAACAV 276 (709)
T ss_pred -CCHHHHHHHHHHHHHhCC
Confidence 788889999998888877
No 396
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.35 E-value=1.4e+02 Score=23.96 Aligned_cols=86 Identities=8% Similarity=0.045 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCC------------HHHHHHHHHHHHcC
Q 038114 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD------------VVLQNYILNMYGKC 91 (170)
Q Consensus 24 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~------------~~~~~~li~~~~~~ 91 (170)
++....+.+.-+..|+..+......++.... |+...+...++.+...+-..+ ....-.++++. ..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~s~--GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~ 254 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARLAD--GAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQ 254 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-Hc
Confidence 3445555554256788888887777777654 788888877777655432112 22233455555 45
Q ss_pred CCHHHHHHHHhhcccCCCCCCCC
Q 038114 92 GSLEDARVVSDEMPQRNVIESPD 114 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~p~ 114 (170)
++.+.|..++.++...|. .|.
T Consensus 255 ~d~~~Al~~l~~Ll~~G~--~~~ 275 (504)
T PRK14963 255 GDAAEALSGAAQLYRDGF--AAR 275 (504)
T ss_pred CCHHHHHHHHHHHHHcCC--CHH
Confidence 789999999999988887 554
No 397
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=47.02 E-value=60 Score=19.25 Aligned_cols=54 Identities=7% Similarity=-0.007 Sum_probs=36.7
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILSS-KSQPDVVLQNYILNMYGKCGSLEDARVVS 101 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 101 (170)
..-.+-.-|-+.|-.+.+.+.+...++. |-. .+...|+.++-.++.-.-|++++
T Consensus 34 ~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~---Atv~~Lv~AL~~c~l~~lAe~l~ 88 (90)
T cd08780 34 AIDNLAYEYDREGLYEQAYQLLRRFIQSEGKK---ATLQRLVQALEENGLTSLAEDLL 88 (90)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHccchHHHHHHh
Confidence 4444555667777778888877777663 422 57777888888887777777665
No 398
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=47.01 E-value=59 Score=19.10 Aligned_cols=19 Identities=0% Similarity=0.018 Sum_probs=11.5
Q ss_pred hhcccchHHHHHHHHHHHh
Q 038114 53 CSSLRSLQLGRKVHDHILS 71 (170)
Q Consensus 53 ~~~~~~~~~a~~~~~~m~~ 71 (170)
....|++++|...+++..+
T Consensus 51 ~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 4455666666666666553
No 399
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=46.91 E-value=59 Score=19.09 Aligned_cols=65 Identities=11% Similarity=0.132 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHH
Q 038114 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136 (170)
Q Consensus 62 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 136 (170)
+..+++.+.+.|+ .+..-+..+- .+....++|..+.+.+..+|. ..|.++..++-..|..+.|.-
T Consensus 16 v~~ild~L~~~gv-lt~~~~e~I~---~~~t~~~qa~~Lld~L~trG~------~Af~~F~~aL~~~~~~~La~l 80 (86)
T cd08323 16 TSYIMDHMISDGV-LTLDEEEKVK---SKATQKEKAVMLINMILTKDN------HAYVSFYNALLHEGYKDLALL 80 (86)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHH---cCCChHHHHHHHHHHHHhcCH------HHHHHHHHHHHhcCChHHHHH
Confidence 4557777777773 3444433332 255567888888888888887 788888888777666555543
No 400
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=46.79 E-value=1.8e+02 Score=28.26 Aligned_cols=113 Identities=11% Similarity=0.092 Sum_probs=62.7
Q ss_pred hhhcccCCHHHHHHHHHHHHhh-CCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 038114 15 NSQPIQNLYNEALVAFDFLQNN-TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS 93 (170)
Q Consensus 15 ~~~~~~~~~~~a~~~~~~m~~~-~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 93 (170)
.+-.+.+.+.+|...+++-+.. ..-.-...-|-.+...|+..++++...-+...-. -.| ....-|-.....|+
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~---a~~---sl~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF---ADP---SLYQQILEHEASGN 1464 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh---cCc---cHHHHHHHHHhhcc
Confidence 3455667778888877773011 1111222334444557888888887777666411 122 22233455666788
Q ss_pred HHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHH
Q 038114 94 LEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136 (170)
Q Consensus 94 ~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 136 (170)
++.|...|+.+.+.+. +...+++-++..--..|.++.+..
T Consensus 1465 ~~da~~Cye~~~q~~p---~~~~~~~g~l~sml~~~~l~t~i~ 1504 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDP---DKEKHHSGVLKSMLAIQHLSTEIL 1504 (2382)
T ss_pred HHHHHHHHHHhhcCCC---ccccchhhHHHhhhcccchhHHHh
Confidence 8888888888876643 224455555444444455555444
No 401
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=45.75 E-value=72 Score=19.74 Aligned_cols=107 Identities=8% Similarity=0.028 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 038114 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDE 103 (170)
Q Consensus 24 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 103 (170)
+.+..+++.+ ...|+--|..--...+....+. .......+-..+.+.|+.++. ....+. .....+.|.++...
T Consensus 9 e~I~~vi~~l-~~~gyidD~~ya~~~v~~~~~~-~~~G~~~I~~~L~~kGi~~~~--i~~~l~---~~~~~e~a~~~~~k 81 (121)
T PF02631_consen 9 EAIEEVIDRL-KELGYIDDERYAESYVRSRLRR-KGKGPRRIRQKLKQKGIDREI--IEEALE---EYDEEEEALELAEK 81 (121)
T ss_dssp HHHHHHHHHH-HHTTSS-HHHHHHHHHHHHHHH-TT--HHHHHHHHHHTT--HHH--HHHHHT---CS-HHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHcCCCCHHHHHHHHHHHhccc-ccccHHHHHHHHHHHCCChHH--HHHHHH---HhhHHHHHHHHHHH
Confidence 3455577777 7777765555555556655542 223344566777777765432 222222 22223445555443
Q ss_pred ccc-CCCCCCCChhhHHHHHHHHhCCC-ChHHHHHHHH
Q 038114 104 MPQ-RNVIESPDLASWNAIIAGVASPS-NANEAMSLFS 139 (170)
Q Consensus 104 m~~-~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~l~~ 139 (170)
-.. ..- .++.....-++..+.+.| .++.+..++.
T Consensus 82 k~~~~~~--~~~~~~~~K~~~~L~rrGF~~~~i~~vi~ 117 (121)
T PF02631_consen 82 KYRRYRK--PSDRKRKQKLIRFLMRRGFSYDVIRRVIS 117 (121)
T ss_dssp HHHHTTT--S-CHHHHHHHHHHHHHTT--HHHHHHHCH
T ss_pred HHhcccC--CCCHHHHHHHHHHHHHCCCCHHHHHHHHh
Confidence 322 222 455566666666666666 4555544444
No 402
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.59 E-value=1.6e+02 Score=23.72 Aligned_cols=83 Identities=11% Similarity=0.056 Sum_probs=54.1
Q ss_pred HHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCC-------------CCCHHHHHHHHHHHHcCCC
Q 038114 27 LVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS-------------QPDVVLQNYILNMYGKCGS 93 (170)
Q Consensus 27 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------------~~~~~~~~~li~~~~~~~~ 93 (170)
...+...-+..|+..+......++... .|+...|..++++....|- .++....-.++.+... ++
T Consensus 184 ~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d 260 (509)
T PRK14958 184 AAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA-KA 260 (509)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CC
Confidence 333333326678877777777776664 4888888888877665431 2233334444455444 78
Q ss_pred HHHHHHHHhhcccCCCCCCCC
Q 038114 94 LEDARVVSDEMPQRNVIESPD 114 (170)
Q Consensus 94 ~~~a~~~~~~m~~~~~~~~p~ 114 (170)
.+.+..++++|...|. .|.
T Consensus 261 ~~~~l~~~~~l~~~g~--~~~ 279 (509)
T PRK14958 261 GDRLLGCVTRLVEQGV--DFS 279 (509)
T ss_pred HHHHHHHHHHHHHcCC--CHH
Confidence 8889999999998888 554
No 403
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=45.56 E-value=1.9e+02 Score=24.65 Aligned_cols=114 Identities=11% Similarity=0.092 Sum_probs=53.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCC----cchhhHHHHHHHhhcc---cchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 20 QNLYNEALVAFDFLQNNTNFR----IRPSTYACLISTCSSL---RSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 20 ~~~~~~a~~~~~~m~~~~~~~----p~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
-|.+++|.++|-.| .++... ...--|-.+...+-.. .+-+.-...|+.+-+. ..+...|-...+.|..+|
T Consensus 747 ~g~feeaek~yld~-drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~--fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDA-DRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGET--FAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred hcchhHhhhhhhcc-chhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcc
Confidence 36777777777777 444322 1222233333333221 1222233344444332 234556777777777777
Q ss_pred CHHHHHHH------Hhhcc--cCCCCCCCChhhHHHHHHHHhCCCChHHHHHHH
Q 038114 93 SLEDARVV------SDEMP--QRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138 (170)
Q Consensus 93 ~~~~a~~~------~~~m~--~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~ 138 (170)
+.+.-.+. |.++. ...+ +-+....-.+..++.+.|.-++|.+.|
T Consensus 824 ~~e~~~ecly~le~f~~LE~la~~L--pe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 824 DTENQIECLYRLELFGELEVLARTL--PEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred chHhHHHHHHHHHhhhhHHHHHHhc--CcccchHHHHHHHHHhhchHHHHHHHH
Confidence 65543332 22222 1122 233333444555555555555555544
No 404
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.33 E-value=1.7e+02 Score=24.39 Aligned_cols=54 Identities=11% Similarity=-0.023 Sum_probs=28.8
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 038114 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105 (170)
Q Consensus 46 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 105 (170)
|..|+-.+...|+-+....+-..-.+.| -.|.-.-+|...|+++++.+++.+-.
T Consensus 695 ~~~LlLl~t~~g~~~~l~~la~~~~~~g------~~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 695 LGSLLLLYTSSGNAEGLAVLASLAKKQG------KNNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred hhhhhhhhhhcCChhHHHHHHHHHHhhc------ccchHHHHHHHcCCHHHHHHHHHhcC
Confidence 3444444444454444444444444333 22334456667788888888776543
No 405
>PRK10292 hypothetical protein; Provisional
Probab=45.19 E-value=53 Score=18.10 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=20.1
Q ss_pred HHHhCCCCCCHhhHHHHHHHhcCCCccc
Q 038114 140 EMRDRELIPDGLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 140 ~m~~~~~~p~~~t~~~ll~~~~~~g~~e 167 (170)
+|...|.+|......-+|+.-...++.+
T Consensus 24 ~m~~lG~e~k~i~Ia~vlrTa~a~~r~~ 51 (69)
T PRK10292 24 EMRDLGQEPKHIVIAGVLRTALANKRIQ 51 (69)
T ss_pred HHHHcCCCcchhhHHHHHHHHHHhcccc
Confidence 4567788888888888887666555443
No 406
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=44.81 E-value=1.1e+02 Score=21.62 Aligned_cols=81 Identities=11% Similarity=0.038 Sum_probs=36.6
Q ss_pred cccchHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHH----HHHh
Q 038114 55 SLRSLQLGRKVHDHILSSKSQPD----VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII----AGVA 126 (170)
Q Consensus 55 ~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li----~~~~ 126 (170)
+.|++++|..-|....+.-.... ...|..---++.+.+.++.|..-..+..+.+. ||+-.| .+|.
T Consensus 107 ~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-------ty~kAl~RRAeaye 179 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-------TYEKALERRAEAYE 179 (271)
T ss_pred hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-------hhHHHHHHHHHHHH
Confidence 44555555555555554321111 12233333344455555555555555444443 343332 3344
Q ss_pred CCCChHHHHHHHHHHH
Q 038114 127 SPSNANEAMSLFSEMR 142 (170)
Q Consensus 127 ~~g~~~~a~~l~~~m~ 142 (170)
+...++.|++=+..+.
T Consensus 180 k~ek~eealeDyKki~ 195 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKIL 195 (271)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 4445555555554444
No 407
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.03 E-value=1.3e+02 Score=22.04 Aligned_cols=118 Identities=13% Similarity=0.034 Sum_probs=61.8
Q ss_pred hhHHHHHHHhhcccchHHHHHHHHHHHh--cCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCC---------
Q 038114 44 STYACLISTCSSLRSLQLGRKVHDHILS--SKSQPD--VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI--------- 110 (170)
Q Consensus 44 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--------- 110 (170)
..|......|...|.++-|-..++..-+ .++.|+ ...|..-+...-..++...|.+++.....--+.
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence 3566667777777776655555544332 133444 334444444444444444444443332111000
Q ss_pred -------------CCCCh-hhHHHHHHHHhCCCChHHHHHHHHHHHhCC---CCCCHhhHHHHHHHhc
Q 038114 111 -------------ESPDL-ASWNAIIAGVASPSNANEAMSLFSEMRDRE---LIPDGLTVRSLLCACT 161 (170)
Q Consensus 111 -------------~~p~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~~---~~p~~~t~~~ll~~~~ 161 (170)
.-|+. ..|-..|-.+.-..++..|...+++-.+.+ -.-+..+...||.+|-
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd 239 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD 239 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc
Confidence 01111 224455566666778888888888765543 2346677888888774
No 408
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.96 E-value=1.8e+02 Score=23.71 Aligned_cols=124 Identities=10% Similarity=-0.010 Sum_probs=73.2
Q ss_pred Hhh-hcccCCHHHHHHHHHHHHhh-------CCCCcchhhHHHHHHHhhcc----c-chHHHHHHHHHHHhcCCCCCHHH
Q 038114 14 YNS-QPIQNLYNEALVAFDFLQNN-------TNFRIRPSTYACLISTCSSL----R-SLQLGRKVHDHILSSKSQPDVVL 80 (170)
Q Consensus 14 i~~-~~~~~~~~~a~~~~~~m~~~-------~~~~p~~~~~~~li~~~~~~----~-~~~~a~~~~~~m~~~~~~~~~~~ 80 (170)
..+ +...++.+.|+..|..+ .. .| ++....-+=.+|.+. . +.+.|..+|..--+.| .|+...
T Consensus 255 ~~G~~g~~~d~e~a~~~l~~a-a~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~ 329 (552)
T KOG1550|consen 255 LAGTYGVTQDLESAIEYLKLA-AESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQY 329 (552)
T ss_pred hhccccccccHHHHHHHHHHH-HHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHH
Confidence 444 67888899999999888 55 44 222344444444442 2 5677888888888777 444444
Q ss_pred HHHHHHHHHc-CCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHH--hCCCChHHHHHHHHHHHhCC
Q 038114 81 QNYILNMYGK-CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGV--ASPSNANEAMSLFSEMRDRE 145 (170)
Q Consensus 81 ~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~--~~~g~~~~a~~l~~~m~~~~ 145 (170)
.-..+...+. ..+...|.+.|..--..|- ++...+-.+.... ....+.+.|..++..-...|
T Consensus 330 ~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 330 LLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 4444444444 3567888888888777766 2222222222111 12336667777777666666
No 409
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=43.84 E-value=1.2e+02 Score=22.94 Aligned_cols=67 Identities=10% Similarity=-0.075 Sum_probs=36.3
Q ss_pred HhhhcccCCHHH---HHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHH
Q 038114 14 YNSQPIQNLYNE---ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQN 82 (170)
Q Consensus 14 i~~~~~~~~~~~---a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 82 (170)
+..+...++... |.-+++.. ... -+.|...--.+++.|...|-...|...|..+.=..++.|+..|.
T Consensus 187 l~~~~~~~~~~~l~~Ai~lLE~~-l~~-s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~ 256 (365)
T PF09797_consen 187 LDLYSKTKDSEYLLQAIALLEHA-LKK-SPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHL 256 (365)
T ss_pred HHHhhccCCHHHHHHHHHHHHHH-HHc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHH
Confidence 333444444443 33344443 222 23455555666777777777777777777765444554544443
No 410
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.65 E-value=1.4e+02 Score=25.91 Aligned_cols=115 Identities=10% Similarity=0.038 Sum_probs=68.7
Q ss_pred HhH-HHhhhcccCCHHHHHHHHHHHHhhCC--C-CcchhhHHHHHHHhhcccch--HHHHHHHHHHHhcCCCCCHHHHHH
Q 038114 10 RFT-FYNSQPIQNLYNEALVAFDFLQNNTN--F-RIRPSTYACLISTCSSLRSL--QLGRKVHDHILSSKSQPDVVLQNY 83 (170)
Q Consensus 10 ~~~-li~~~~~~~~~~~a~~~~~~m~~~~~--~-~p~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~ 83 (170)
.|. |+.-|...|+.++|+++|.+. ...- . .--..-+--++.-..+.+.. +.+++.-.+..+....-...+++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l-~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDL-VDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHH-hccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 455 899999999999999999998 3311 0 00111233355555555444 555555555554432222222222
Q ss_pred ------------HHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhC
Q 038114 84 ------------ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127 (170)
Q Consensus 84 ------------li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~ 127 (170)
.+-.|......+.+.+.++.+....- .++..-.+.++..|+.
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~--~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNR--LTSTLLHTVLLKLYLE 638 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcc--ccchHHHHHHHHHHHH
Confidence 23345566677777888887776655 5677778888877754
No 411
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.54 E-value=1.9e+02 Score=24.03 Aligned_cols=83 Identities=13% Similarity=0.135 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCC-------------CCCHHHHHHHHHHHHc
Q 038114 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS-------------QPDVVLQNYILNMYGK 90 (170)
Q Consensus 24 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------------~~~~~~~~~li~~~~~ 90 (170)
++....+.+.-...|+..+......++... .|+...+..++++....|- .++......++.+...
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~ 263 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLARAA--RGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ 263 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 344444444325678888887777777753 4788888888776554331 1223334445555544
Q ss_pred CCCHHHHHHHHhhcccCCC
Q 038114 91 CGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 91 ~~~~~~a~~~~~~m~~~~~ 109 (170)
++...+.++++++...|.
T Consensus 264 -~d~~~al~~l~~l~~~G~ 281 (618)
T PRK14951 264 -GDGRTVVETADELRLNGL 281 (618)
T ss_pred -CCHHHHHHHHHHHHHcCC
Confidence 788888888888888777
No 412
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.39 E-value=1.9e+02 Score=23.89 Aligned_cols=80 Identities=11% Similarity=0.098 Sum_probs=54.8
Q ss_pred HHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCC
Q 038114 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYG-KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP 128 (170)
Q Consensus 50 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~ 128 (170)
|....+.|-+.-|.++-+-+.+-...-|+...-.+|+.|+ +.++++...+++++....+.........|+..+.-+.-.
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 4455677889999998888887665557888888888876 567899999999877533221122335677666544333
Q ss_pred C
Q 038114 129 S 129 (170)
Q Consensus 129 g 129 (170)
+
T Consensus 429 ~ 429 (665)
T KOG2422|consen 429 K 429 (665)
T ss_pred c
Confidence 3
No 413
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=43.12 E-value=62 Score=20.25 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=19.5
Q ss_pred HHHHHHcCCCHHHHHHHHhhcccCCC
Q 038114 84 ILNMYGKCGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 84 li~~~~~~~~~~~a~~~~~~m~~~~~ 109 (170)
+|+.+-+|...++|+++.+-|.+.|-
T Consensus 67 ViD~lrRC~T~EEALEVInylek~GE 92 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRGE 92 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 45667777888888888888877766
No 414
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=42.77 E-value=65 Score=18.42 Aligned_cols=33 Identities=9% Similarity=0.166 Sum_probs=19.9
Q ss_pred chHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 038114 58 SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91 (170)
Q Consensus 58 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 91 (170)
+.+.|..++..++... ..++..||++-+.+.|.
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 4456666666665443 44677777776666543
No 415
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=42.69 E-value=1.8e+02 Score=23.52 Aligned_cols=79 Identities=13% Similarity=0.134 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 038114 26 ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILS-SKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104 (170)
Q Consensus 26 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 104 (170)
...+|... . ..+..|+..|..-|..|-+.+.+.....+|.+|.. ++..||..++.+. .-|-.+.+++.|..+|..-
T Consensus 90 Iv~lyr~a-t-~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 90 IVFLYRRA-T-NRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHH-H-HhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHH
Confidence 34444444 2 23445788888888888777778888888888865 4556666555543 3344444577777776654
Q ss_pred ccC
Q 038114 105 PQR 107 (170)
Q Consensus 105 ~~~ 107 (170)
.+.
T Consensus 167 LR~ 169 (568)
T KOG2396|consen 167 LRF 169 (568)
T ss_pred hhc
Confidence 433
No 416
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.53 E-value=1.1e+02 Score=21.04 Aligned_cols=95 Identities=11% Similarity=-0.052 Sum_probs=69.4
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchh-hHHHHHHH--hhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPS-TYACLIST--CSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 90 (170)
-...++.|+-..|...|+++ ......|-.. -..-|=.+ +...|.+++...-.+.+-..+-+.....-..|--+-.+
T Consensus 101 at~~a~kgdta~AV~aFdei-a~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~k 179 (221)
T COG4649 101 ATLLAQKGDTAAAVAAFDEI-AADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYK 179 (221)
T ss_pred HHHHhhcccHHHHHHHHHHH-hccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHh
Confidence 45567889999999999999 5554445443 22222222 35789999988888888776666666667777778889
Q ss_pred CCCHHHHHHHHhhcccCCC
Q 038114 91 CGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 91 ~~~~~~a~~~~~~m~~~~~ 109 (170)
.|++..|.+.|..+-....
T Consensus 180 agd~a~A~~~F~qia~Da~ 198 (221)
T COG4649 180 AGDFAKAKSWFVQIANDAQ 198 (221)
T ss_pred ccchHHHHHHHHHHHcccc
Confidence 9999999999998765443
No 417
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=42.30 E-value=16 Score=19.46 Aligned_cols=33 Identities=30% Similarity=0.521 Sum_probs=23.1
Q ss_pred CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHh
Q 038114 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVA 126 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~ 126 (170)
|=.++...+|..|..+.. .|....||-.+.-|.
T Consensus 6 gy~~~lI~vFK~~pSr~Y--D~~Tr~W~F~L~Dy~ 38 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNY--DPKTRKWNFSLEDYS 38 (55)
T ss_pred cCCHHHHHHHHcCccccc--CccceeeeeeHHHHH
Confidence 334667788888888877 777777776665543
No 418
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=42.28 E-value=1.5e+02 Score=22.57 Aligned_cols=83 Identities=14% Similarity=0.065 Sum_probs=55.7
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhC---CCCcchhhHH--HHHHHhhcccchHHHHHHHHHHHh-----cCCCCCHH-HH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNT---NFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILS-----SKSQPDVV-LQ 81 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~---~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~-~~ 81 (170)
++...-+.++.++|+++++++ .+. --.|+.+.|. ...+++-..|+...+.+++.+.++ .|++|++. .|
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i-~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKI-IEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHH-HHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 455556667899999999998 432 2346666554 445556678999999999999887 57777543 45
Q ss_pred HHHHHHHHcC-CCHHH
Q 038114 82 NYILNMYGKC-GSLED 96 (170)
Q Consensus 82 ~~li~~~~~~-~~~~~ 96 (170)
..+=.-|.++ |++..
T Consensus 160 Y~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHHHHHhHHH
Confidence 5554444443 55443
No 419
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=42.05 E-value=46 Score=18.63 Aligned_cols=36 Identities=6% Similarity=0.164 Sum_probs=21.6
Q ss_pred ccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 038114 56 LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91 (170)
Q Consensus 56 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 91 (170)
.++.+.+.+++++..+.|..|.......+..+.-+.
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~i 49 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEI 49 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 356666777777777666666665555565555443
No 420
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=41.85 E-value=94 Score=20.88 Aligned_cols=83 Identities=11% Similarity=0.038 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHhhCC---CCcchh---hHHHHHHHhhcccchHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHcCCCH
Q 038114 22 LYNEALVAFDFLQNNTN---FRIRPS---TYACLISTCSSLRSLQLGRKVHDHILS-SKSQPDVVLQNYILNMYGKCGSL 94 (170)
Q Consensus 22 ~~~~a~~~~~~m~~~~~---~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~ 94 (170)
+..+|..+|..+-.... +.++.. .....+....+..++ +++..+.+ .|+.+......=++..+.+.-.+
T Consensus 108 ~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p----~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~ 183 (199)
T smart00164 108 DEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYDP----DLYKHLKDKLGIDPSLYALRWFLTLFARELPL 183 (199)
T ss_pred CHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHCH----HHHHHHHHhcCCCchhHHHHHHHHHHHhhCCH
Confidence 45667666666522222 334432 233334444443333 57888885 89999999999999999998899
Q ss_pred HHHHHHHhhcccCC
Q 038114 95 EDARVVSDEMPQRN 108 (170)
Q Consensus 95 ~~a~~~~~~m~~~~ 108 (170)
+.+.++++.+...|
T Consensus 184 ~~~~riwD~~l~eG 197 (199)
T smart00164 184 EIVLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999876555
No 421
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=41.11 E-value=1.6e+02 Score=22.29 Aligned_cols=57 Identities=12% Similarity=0.081 Sum_probs=36.2
Q ss_pred HHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038114 27 LVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYG 89 (170)
Q Consensus 27 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 89 (170)
.++|+.+ +..++.|.-..|..+.-.+...=.+.++..+|+.+... +.-|..|+..||
T Consensus 263 ~EL~~~L-~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHL-EEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICC 319 (370)
T ss_pred HHHHHHH-HhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHH
Confidence 4566777 67777777777776666666666677777777777542 222555555554
No 422
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=40.79 E-value=82 Score=19.03 Aligned_cols=61 Identities=8% Similarity=0.009 Sum_probs=38.7
Q ss_pred hHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhccc--chHHHHHHHHHHHhcCC
Q 038114 11 FTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLR--SLQLGRKVHDHILSSKS 74 (170)
Q Consensus 11 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~ 74 (170)
+.++..|...+++++|.+-+.++ ..... .......+|..+...+ .-+.+..++..+.+.+.
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L-~~~~~--~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLEL-KLPEQ--HHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANV 68 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh-CCCcc--hHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCC
Confidence 44788899999999999999998 54432 2334445555554432 34555566666665553
No 423
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=40.79 E-value=88 Score=24.82 Aligned_cols=75 Identities=11% Similarity=0.082 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhc-----------ccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 038114 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSS-----------LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90 (170)
Q Consensus 22 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-----------~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 90 (170)
++++|..+.+.+ |....|...+.-..+ .+.+++-.++++.+.+.| .+| ...+-|+.|-|
T Consensus 29 d~~eav~y~k~~-------p~~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR 98 (480)
T TIGR01503 29 DLQDAVDYHKSI-------PAHKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTR 98 (480)
T ss_pred CHHHHHHHHHhC-------CccccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHcc-CCC--ccceeeecccc
Confidence 566777766666 444444444444332 234677788888888776 233 44556788999
Q ss_pred CCCHHHHHHHHhhccc
Q 038114 91 CGSLEDARVVSDEMPQ 106 (170)
Q Consensus 91 ~~~~~~a~~~~~~m~~ 106 (170)
.++++.|...+++-.+
T Consensus 99 ~n~y~~A~~~l~~s~~ 114 (480)
T TIGR01503 99 QNRYDEAAVGIKESIK 114 (480)
T ss_pred cccHHHHHHHHHhhhh
Confidence 9999998888886554
No 424
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=40.78 E-value=1.3e+02 Score=22.80 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=45.3
Q ss_pred HHHHHHhhcccc---hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhH
Q 038114 47 ACLISTCSSLRS---LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118 (170)
Q Consensus 47 ~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~ 118 (170)
..++..+.+.++ +-.|..+++...... +-+...--.|++.|..-|..+.|.+.|..+.-+.+ .-|...|
T Consensus 184 ~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~I--Q~DTL~h 255 (365)
T PF09797_consen 184 HSLLDLYSKTKDSEYLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNI--QLDTLGH 255 (365)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHH--HHHHhHH
Confidence 344555545554 445555666555442 44556666788899999999999999998876666 4554443
No 425
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=40.61 E-value=93 Score=19.59 Aligned_cols=62 Identities=8% Similarity=0.018 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHH
Q 038114 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140 (170)
Q Consensus 75 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~ 140 (170)
.-|+.-....|..--... .+.++|..|...|+- .-...-|......+...|++++|..+|..
T Consensus 63 ~nD~RylkiWi~ya~~~~---~~~~if~~l~~~~IG-~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 63 KNDERYLKIWIKYADLSS---DPREIFKFLYSKGIG-TKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp TT-HHHHHHHHHHHTTBS---HHHHHHHHHHHHTTS-TTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcc---CHHHHHHHHHHcCcc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 445554444444333222 889999999988773 34455688888999999999999999874
No 426
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=40.51 E-value=1.8e+02 Score=22.87 Aligned_cols=128 Identities=10% Similarity=0.114 Sum_probs=67.4
Q ss_pred hhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---C
Q 038114 16 SQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC---G 92 (170)
Q Consensus 16 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---~ 92 (170)
-+.+.|++.+|+..|..+ .+.+.+.......+.+++.++....++. +....|..-.|. .
T Consensus 213 k~~t~gKF~eA~~~Fr~i-----------L~~i~l~vv~~~~E~~e~~eli~icrEY-------ilgl~iEl~Rr~l~~~ 274 (422)
T PF06957_consen 213 KLFTAGKFEEAIEIFRSI-----------LHSIPLLVVESREEEDEAKELIEICREY-------ILGLSIELERRELPKD 274 (422)
T ss_dssp HHHHTT-HHHHHHHHHHH-----------HHHHHC--BSSCHHHHHHHHHHHHHHHH-------HHHHHHHHHHCTS-TT
T ss_pred HHHhcCCHHHHHHHHHHH-----------HHHhheeeecCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcccc
Confidence 345667888888887777 4444444444445555555555554432 222222222222 1
Q ss_pred CH---HHHHHHHhhcccCCCCCCCC--hhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHhcCC
Q 038114 93 SL---EDARVVSDEMPQRNVIESPD--LASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL-TVRSLLCACTSP 163 (170)
Q Consensus 93 ~~---~~a~~~~~~m~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~-t~~~ll~~~~~~ 163 (170)
.. +...++--.+...++ +|. ..+....+..+.+.+++..|-.+-+++.+.+-.|+.. .-.-++..|-+.
T Consensus 275 ~~~~~kR~lELAAYFThc~L--Qp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~e~~ 349 (422)
T PF06957_consen 275 PVEDQKRNLELAAYFTHCKL--QPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQACERN 349 (422)
T ss_dssp THHHHHHHHHHHHHHCCS-----HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHHCCS
T ss_pred chhhHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 12 233444444555554 443 2345666778888899999999988888776555442 355566666543
No 427
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=40.16 E-value=1e+02 Score=19.92 Aligned_cols=90 Identities=11% Similarity=0.017 Sum_probs=40.7
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhC-CCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHH-HHHc
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNT-NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN-MYGK 90 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~-~~~~ 90 (170)
....+...+.+..+...+... ... ........+......+...+....+...+.........+ ......... .+..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 142 (291)
T COG0457 65 LALALLKLGRLEEALELLEKA-LELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYE 142 (291)
T ss_pred HHHHHHHcccHHHHHHHHHHH-HhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHH
Confidence 344455555555555555554 221 222233344444444444455555555555555432222 111222222 4555
Q ss_pred CCCHHHHHHHHhhc
Q 038114 91 CGSLEDARVVSDEM 104 (170)
Q Consensus 91 ~~~~~~a~~~~~~m 104 (170)
.|+++.|...|...
T Consensus 143 ~~~~~~a~~~~~~~ 156 (291)
T COG0457 143 LGDYEEALELYEKA 156 (291)
T ss_pred cCCHHHHHHHHHHH
Confidence 55666666655555
No 428
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=40.09 E-value=37 Score=25.41 Aligned_cols=71 Identities=8% Similarity=0.062 Sum_probs=40.3
Q ss_pred hhcccchHHHHHHH-HHHHhcCCCCCH----HHHHHHHHHHHcCCCH-HHHHHHHhhcccCCCCCCCChhhHHHHHHHHh
Q 038114 53 CSSLRSLQLGRKVH-DHILSSKSQPDV----VLQNYILNMYGKCGSL-EDARVVSDEMPQRNVIESPDLASWNAIIAGVA 126 (170)
Q Consensus 53 ~~~~~~~~~a~~~~-~~m~~~~~~~~~----~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~ 126 (170)
..+...+++..... ++|++.+ .|++ .+|+.++++---+.+- .-|.+.++.+ -+|..++.++|
T Consensus 265 ~s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qalrhl-----------K~yaPLL~af~ 332 (412)
T KOG2297|consen 265 VSEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHL-----------KQYAPLLAAFC 332 (412)
T ss_pred hccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHH-----------HhhhHHHHHHh
Confidence 33444455544443 4555555 4443 3677777765444221 1233333333 47888999999
Q ss_pred CCCChHHHH
Q 038114 127 SPSNANEAM 135 (170)
Q Consensus 127 ~~g~~~~a~ 135 (170)
..|+.+..+
T Consensus 333 s~g~sEL~L 341 (412)
T KOG2297|consen 333 SQGQSELEL 341 (412)
T ss_pred cCChHHHHH
Confidence 999887654
No 429
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=40.09 E-value=2e+02 Score=23.31 Aligned_cols=114 Identities=12% Similarity=0.176 Sum_probs=72.2
Q ss_pred cchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHH
Q 038114 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNA 120 (170)
Q Consensus 41 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ 120 (170)
+....|..|++..... +.+...+++.++.. .. ...+..++++....|......-+.+.++...+ .+ ...-..
T Consensus 308 ~~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~--~~-~ea~~~ 379 (574)
T smart00638 308 PAAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI--TP-LEAAQL 379 (574)
T ss_pred chHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC--CH-HHHHHH
Confidence 4566788888887665 57778888888864 11 67999999999999999888888888877766 33 233333
Q ss_pred HHHHHhCC-CChHHHHHHHHHHHh-CCCCCCH-------hhHHHHHHHhcC
Q 038114 121 IIAGVASP-SNANEAMSLFSEMRD-RELIPDG-------LTVRSLLCACTS 162 (170)
Q Consensus 121 li~~~~~~-g~~~~a~~l~~~m~~-~~~~p~~-------~t~~~ll~~~~~ 162 (170)
+....... .--.+.++.+.+|.+ ..+.+.. .+|.+++.-+|.
T Consensus 380 ~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~ 430 (574)
T smart00638 380 LAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCV 430 (574)
T ss_pred HHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhc
Confidence 33333322 223334444444444 4455554 456666664443
No 430
>PLN02389 biotin synthase
Probab=40.06 E-value=20 Score=27.49 Aligned_cols=72 Identities=8% Similarity=0.086 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCC-----CCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHH
Q 038114 63 RKVHDHILSSKSQ-----PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137 (170)
Q Consensus 63 ~~~~~~m~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l 137 (170)
.+.++.+++.|+. .+. -..+..-.+..+.+++-++..+..++.|+ .+...+|-++ ....++..+.
T Consensus 178 ~E~l~~LkeAGld~~~~~LeT--s~~~y~~i~~~~s~e~rl~ti~~a~~~Gi------~v~sg~IiGl--gEt~edrv~~ 247 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDT--SREYYPNVITTRSYDDRLETLEAVREAGI------SVCSGGIIGL--GEAEEDRVGL 247 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecC--ChHHhCCcCCCCCHHHHHHHHHHHHHcCC------eEeEEEEECC--CCCHHHHHHH
Confidence 3566667666653 221 01122222234577777777887777777 4444555555 2334444444
Q ss_pred HHHHHhC
Q 038114 138 FSEMRDR 144 (170)
Q Consensus 138 ~~~m~~~ 144 (170)
+..+.+.
T Consensus 248 l~~Lr~L 254 (379)
T PLN02389 248 LHTLATL 254 (379)
T ss_pred HHHHHhc
Confidence 4455443
No 431
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=39.93 E-value=76 Score=18.34 Aligned_cols=55 Identities=7% Similarity=-0.077 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHH
Q 038114 61 LGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGV 125 (170)
Q Consensus 61 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~ 125 (170)
.+..+++.+.+.| ..+...|..+-. ..-..++|.++++.+...|. ..|..+..++
T Consensus 16 ~v~~ilD~L~~~~-Vit~e~~~~I~a---~~T~~~kar~Lld~l~~kG~------~A~~~F~~~L 70 (82)
T cd08330 16 NVDPILDKLHGKK-VITQEQYSEVRA---EKTNQEKMRKLFSFVRSWGA------SCKDIFYQIL 70 (82)
T ss_pred hHHHHHHHHHHCC-CCCHHHHHHHHc---CCCcHHHHHHHHHHHHccCH------HHHHHHHHHH
Confidence 4456777777766 345555555433 34557777777777777776 6666666666
No 432
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=39.76 E-value=75 Score=18.23 Aligned_cols=47 Identities=11% Similarity=0.183 Sum_probs=20.5
Q ss_pred hhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 038114 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91 (170)
Q Consensus 43 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 91 (170)
+.....+++.+.+ ++++++.....++...|+.+ ....+.+.....+.
T Consensus 5 ~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~-~~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 5 PEVIEEILESCLN-GDFKEARKKLYELLVEGYSA-SDILKQLHEVLVES 51 (89)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--H-HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHh
Confidence 3334444444433 25555555555555555444 22334444444443
No 433
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=39.76 E-value=98 Score=19.57 Aligned_cols=84 Identities=14% Similarity=0.133 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHhhCCCCcchh-hHHHHHHHhhcccchHHHHHHHHHHHh-cCCCC-CHHHHHHHHHHHHcCCCHHHHH
Q 038114 22 LYNEALVAFDFLQNNTNFRIRPS-TYACLISTCSSLRSLQLGRKVHDHILS-SKSQP-DVVLQNYILNMYGKCGSLEDAR 98 (170)
Q Consensus 22 ~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~-~~~~~~~li~~~~~~~~~~~a~ 98 (170)
++..|+.-++.. .... ..+.. ....+|..+. =-++.+.++++...+ .|+.- +..+-..+++...+.|-++...
T Consensus 4 nf~kAl~~L~~a-~~~~-~~~~~~~~~g~IqrFE--~t~ELaWK~lK~~L~~~G~~~~~~~spr~~ir~A~~~glI~d~~ 79 (123)
T TIGR01987 4 SFEQALMQLSDA-NWFD-LTNDITIIDGAIQKFE--FTFELAWKLMKRYLAQEGINDIGAYSPKDVLKEAFRAGLIGDES 79 (123)
T ss_pred HHHHHHHHHHHH-HhcC-ccchHHHHHHHHHHhh--hHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHcCCcCCHH
Confidence 466677666666 3331 12222 4555565554 236777777777655 46632 2556778888888888877766
Q ss_pred HHHhhcccCCC
Q 038114 99 VVSDEMPQRNV 109 (170)
Q Consensus 99 ~~~~~m~~~~~ 109 (170)
..++....++.
T Consensus 80 ~W~~ml~~RN~ 90 (123)
T TIGR01987 80 LWIAMLDDRNI 90 (123)
T ss_pred HHHHHHHHhCc
Confidence 55555555554
No 434
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=39.66 E-value=1.6e+02 Score=22.04 Aligned_cols=84 Identities=14% Similarity=0.195 Sum_probs=50.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcc----cCCCC------CCCChhhHHHH-HHHHhCCCChH
Q 038114 64 KVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP----QRNVI------ESPDLASWNAI-IAGVASPSNAN 132 (170)
Q Consensus 64 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~------~~p~~~~~~~l-i~~~~~~g~~~ 132 (170)
-+-....+.|+..+....+.|+..+. |+...+..-++.+. ...+. ...+..+++.. +......|+..
T Consensus 148 ~i~~~~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~ 225 (334)
T COG1466 148 WIKKRAKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVK 225 (334)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHH
Confidence 34445566788888888888877776 66655555555443 11110 01111222221 22334559999
Q ss_pred HHHHHHHHHHhCCCCCC
Q 038114 133 EAMSLFSEMRDRELIPD 149 (170)
Q Consensus 133 ~a~~l~~~m~~~~~~p~ 149 (170)
+|.++++++...|..|=
T Consensus 226 ~a~~~l~~L~~~ge~p~ 242 (334)
T COG1466 226 KALRLLRDLLLEGEEPL 242 (334)
T ss_pred HHHHHHHHHHHcCCcHH
Confidence 99999999999887653
No 435
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=39.14 E-value=54 Score=24.63 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=18.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhccc
Q 038114 81 QNYILNMYGKCGSLEDARVVSDEMPQ 106 (170)
Q Consensus 81 ~~~li~~~~~~~~~~~a~~~~~~m~~ 106 (170)
.=.|++.|.++|.+++|.++....+.
T Consensus 109 lP~Lm~~ci~~g~y~eALel~~~~~~ 134 (338)
T PF04124_consen 109 LPQLMDTCIRNGNYSEALELSAHVRR 134 (338)
T ss_pred hHHHHHHHHhcccHhhHHHHHHHHHH
Confidence 34667777788888888887776554
No 436
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.95 E-value=2e+02 Score=23.05 Aligned_cols=62 Identities=3% Similarity=-0.071 Sum_probs=38.0
Q ss_pred hcccCCHHHHHHHHHHHHhhC-C--CC----------cchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHH
Q 038114 17 QPIQNLYNEALVAFDFLQNNT-N--FR----------IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV 79 (170)
Q Consensus 17 ~~~~~~~~~a~~~~~~m~~~~-~--~~----------p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 79 (170)
-...|...+|+.++++. ... + +. ++...+..++.+....+....+..++.++.+.|..|...
T Consensus 210 ~~S~Gd~RdAL~lLeq~-i~~~~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 210 KKGDGSVRDMLSFMEQA-IVFTDSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHcCChHHHHHHHHHHH-HHhCCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 34458888999998875 321 1 11 122233445555554444567888888888888777544
No 437
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=38.76 E-value=1.6e+02 Score=21.70 Aligned_cols=66 Identities=14% Similarity=0.005 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCC-CCChhhHHHHHHHHhCCCChHHHHHHHHHHHh
Q 038114 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIE-SPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 78 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 143 (170)
..+|..+.+.+-+.|.++.|...+..+...+... ..++...-.-....-..|+..+|+..+++...
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456666777778899999999888877654200 11333444445666777888999988888776
No 438
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=38.40 E-value=70 Score=17.59 Aligned_cols=34 Identities=21% Similarity=0.060 Sum_probs=14.1
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhc
Q 038114 128 PSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161 (170)
Q Consensus 128 ~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~ 161 (170)
.+.+-.+..+.+.+...|...+..|....+++.-
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me 43 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAME 43 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHH
Confidence 3333334444444444444444444444444433
No 439
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=38.25 E-value=2.2e+02 Score=23.27 Aligned_cols=92 Identities=9% Similarity=-0.056 Sum_probs=61.8
Q ss_pred chhHhHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038114 7 TQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86 (170)
Q Consensus 7 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 86 (170)
+.--.+++.-|+++..+.-+..+-.+| ..-| -+-..|-.++.+|... ..++-..+|+.+.+..+. |++.-..|..
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~-l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRV-LEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHH-HHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 333344788888888888888888888 6544 4566788888888877 677778888888877543 4444444555
Q ss_pred HHHcCCCHHHHHHHHhhc
Q 038114 87 MYGKCGSLEDARVVSDEM 104 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m 104 (170)
-|-+ ++.+.+-..|.+.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka 157 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKA 157 (711)
T ss_pred HHHH-hchhhHHHHHHHH
Confidence 4544 5555555555544
No 440
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=38.01 E-value=2.2e+02 Score=23.05 Aligned_cols=86 Identities=10% Similarity=0.074 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcC------C----------CCCHHHHHHHHHH
Q 038114 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK------S----------QPDVVLQNYILNM 87 (170)
Q Consensus 24 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~----------~~~~~~~~~li~~ 87 (170)
++....+...-+..|+..+......+.... .|++..+...+++....+ + ..+....-.|+.+
T Consensus 190 ~el~~~L~~i~~~egi~ie~eAL~~Ia~~s--~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~a 267 (507)
T PRK06645 190 EEIFKLLEYITKQENLKTDIEALRIIAYKS--EGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEY 267 (507)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHH
Confidence 344555554435677777777777666653 477888888777764321 1 1222333344444
Q ss_pred HHcCCCHHHHHHHHhhcccCCCCCCCC
Q 038114 88 YGKCGSLEDARVVSDEMPQRNVIESPD 114 (170)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~~~~~~p~ 114 (170)
..+ ++.+.|..+++++...|. .|.
T Consensus 268 i~~-~d~~~Al~~l~~L~~~g~--~~~ 291 (507)
T PRK06645 268 IIH-RETEKAINLINKLYGSSV--NLE 291 (507)
T ss_pred HHc-CCHHHHHHHHHHHHHcCC--CHH
Confidence 443 788888888888888877 555
No 441
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=38.00 E-value=1.8e+02 Score=22.10 Aligned_cols=67 Identities=12% Similarity=0.088 Sum_probs=45.4
Q ss_pred HHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhc
Q 038114 88 YGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161 (170)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~ 161 (170)
+.|.+++-...++++.+...+. ..-++++++... |+.+.....++++++.|+.++..-...|....+
T Consensus 286 ~lK~r~~y~~~kfvd~L~r~d~------e~~~~L~~ai~~-~~~~~~Ysa~R~~k~~g~~~~~~~v~~lae~l~ 352 (354)
T TIGR01914 286 YLKARDFYSWPKFVDFLARRDP------EISLQLTDAILN-GDEEAFYTALRELKKSGVRYDPEQVDALAEILA 352 (354)
T ss_pred HHhhhhhcchHHHHHHHhccCh------HHHHHHHHHHHc-CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Confidence 4444444445555555554433 556666666554 677777888888999999999998888877664
No 442
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=37.76 E-value=35 Score=23.44 Aligned_cols=61 Identities=8% Similarity=-0.015 Sum_probs=36.9
Q ss_pred ccccchhHhHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHH
Q 038114 3 RNLKTQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHI 69 (170)
Q Consensus 3 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 69 (170)
+.+|+.+.-.++..|...|+.+...++.-.+ .|+.--...++..|-+.|-++.-.-++...
T Consensus 18 ~~lpp~v~k~lv~~y~~~~~~~~lE~lI~~L------D~~~LDidq~i~lC~~~~LydalIYv~n~~ 78 (196)
T PF12816_consen 18 KSLPPEVFKALVEHYASKGRLERLEQLILHL------DPSSLDIDQVIKLCKKHGLYDALIYVWNRA 78 (196)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhC------CHHhcCHHHHHHHHHHCCCCCeeeeeeecc
Confidence 3455655555788888888877777777766 234444455666666666555444444433
No 443
>PF13934 ELYS: Nuclear pore complex assembly
Probab=37.45 E-value=1.5e+02 Score=20.94 Aligned_cols=109 Identities=8% Similarity=0.008 Sum_probs=61.8
Q ss_pred HHhhh--cccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 038114 13 FYNSQ--PIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90 (170)
Q Consensus 13 li~~~--~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 90 (170)
++.+| .-.++++.|.+.+-.- .+.|+ .-.-++.+....|+...|..++....-.. .+...-+.++.. ..
T Consensus 82 ~~~g~W~LD~~~~~~A~~~L~~p----s~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La 152 (226)
T PF13934_consen 82 FIQGFWLLDHGDFEEALELLSHP----SLIPW--FPDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LA 152 (226)
T ss_pred HHHHHHHhChHhHHHHHHHhCCC----CCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HH
Confidence 45554 3346666666655332 22222 22246777777888898888887754221 123334444444 77
Q ss_pred CCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHh----CCCChHHHH
Q 038114 91 CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVA----SPSNANEAM 135 (170)
Q Consensus 91 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~----~~g~~~~a~ 135 (170)
++.+.+|...-+...+..- ...+..++..+. +.+..++..
T Consensus 153 ~~~v~EAf~~~R~~~~~~~-----~~l~e~l~~~~~~~~~~~~~~~~Ll 196 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYPDELR-----RRLFEQLLEHCLEECARSGRLDELL 196 (226)
T ss_pred cCCHHHHHHHHHhCchhhh-----HHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 7899999988887766321 134555554444 666555543
No 444
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.24 E-value=2.4e+02 Score=23.44 Aligned_cols=87 Identities=14% Similarity=0.125 Sum_probs=55.8
Q ss_pred HHHHHHHHH-HhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCC--C---------CCCChhhHHHHHHHHhCC
Q 038114 61 LGRKVHDHI-LSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV--I---------ESPDLASWNAIIAGVASP 128 (170)
Q Consensus 61 ~a~~~~~~m-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~---------~~p~~~~~~~li~~~~~~ 128 (170)
+....+... .+.|+..+......++. ...|++..+..+++.....+. + ..++......++.++..
T Consensus 187 ei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~- 263 (618)
T PRK14951 187 TVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ- 263 (618)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc-
Confidence 333344333 44678777777777766 345888888888765432221 0 02344445556666665
Q ss_pred CChHHHHHHHHHHHhCCCCCCH
Q 038114 129 SNANEAMSLFSEMRDRELIPDG 150 (170)
Q Consensus 129 g~~~~a~~l~~~m~~~~~~p~~ 150 (170)
|+...++.++++|...|..|..
T Consensus 264 ~d~~~al~~l~~l~~~G~~~~~ 285 (618)
T PRK14951 264 GDGRTVVETADELRLNGLSAAS 285 (618)
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 8999999999999999887654
No 445
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=37.12 E-value=1.1e+02 Score=19.30 Aligned_cols=83 Identities=14% Similarity=0.152 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhhC-CCCcchhhHHHHHHHhhcccchHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 038114 23 YNEALVAFDFLQNNT-NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILS-SKSQPDVVLQNYILNMYGKCGSLEDARVV 100 (170)
Q Consensus 23 ~~~a~~~~~~m~~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 100 (170)
+..|+.-+++. ... .-.++......+|..+.-. ++.+.++++...+ .|+. +..+-..+++...+.|-++.....
T Consensus 6 ~~kAl~~L~ea-~~~~~~~~~~~~~dg~IqrFE~t--~ElaWK~lK~~L~~~G~~-~~~spr~~~r~A~~~glI~d~e~W 81 (124)
T PF08780_consen 6 FKKALSRLEEA-LEKYEDPLSELERDGVIQRFEFT--FELAWKTLKDYLEYEGIS-ECNSPRDVFREAFKAGLIDDGEIW 81 (124)
T ss_dssp HHHHHHHHHHH-HHHH-SCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCTSS-CCTSHHHHHHHHHHTTSSSHHHHH
T ss_pred HHHHHHHHHHH-HHhccCcchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCc-ccCCHHHHHHHHHHcCCCCCHHHH
Confidence 45566666665 332 1234445566666666543 6777777776544 4653 333347777888888877666666
Q ss_pred HhhcccCCC
Q 038114 101 SDEMPQRNV 109 (170)
Q Consensus 101 ~~~m~~~~~ 109 (170)
++....++.
T Consensus 82 l~m~~~RN~ 90 (124)
T PF08780_consen 82 LDMLEDRNL 90 (124)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 655555443
No 446
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=37.03 E-value=1.5e+02 Score=22.11 Aligned_cols=56 Identities=9% Similarity=-0.062 Sum_probs=24.4
Q ss_pred hhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHH--HHHHhhcccchHHHHHHHHHHHh
Q 038114 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYAC--LISTCSSLRSLQLGRKVHDHILS 71 (170)
Q Consensus 15 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~--li~~~~~~~~~~~a~~~~~~m~~ 71 (170)
..+...+.++.|+..++.. ...--.|-...|.- +.+.|...|..+.|..++.++.+
T Consensus 221 ~~l~~~~gl~~Al~~L~~~-~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 221 RALAAEGGLEAALQRLQQR-LAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred HHHHHcCCHHHHHHHHHhh-cccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555542 22112222222222 22334555555555555555543
No 447
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=36.99 E-value=79 Score=17.68 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCCh
Q 038114 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNA 131 (170)
Q Consensus 62 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~ 131 (170)
...++..+.+.|+- +..-+..+-. .....+.+.++++.+..+|- .+|..++.++-..++.
T Consensus 15 ~~~il~~L~~~~vl-t~~e~~~i~~---~~~~~~k~~~Lld~l~~kg~------~af~~F~~~L~~~~~~ 74 (80)
T cd01671 15 VEDVLDHLLSDGVL-TEEEYEKIRS---ESTRQDKARKLLDILPRKGP------KAFQSFLQALQETDQP 74 (80)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHhcCh------HHHHHHHHHHHhcCCh
Confidence 34455555555532 3333333322 12255666666666666655 5666666666554433
No 448
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=36.74 E-value=13 Score=29.39 Aligned_cols=76 Identities=21% Similarity=0.115 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhC------CCChHHHHHHHHHHHhCCCCCCHhhH
Q 038114 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS------PSNANEAMSLFSEMRDRELIPDGLTV 153 (170)
Q Consensus 80 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~------~g~~~~a~~l~~~m~~~~~~p~~~t~ 153 (170)
-|++|..++.|+-.+.+ ..+=.+|...+- .-+. ++-.|.+ ..+..++.++..+-.-+-+.|...||
T Consensus 492 Py~iL~~cl~Rn~g~~d-~~ik~E~i~~~n--qkse-----~im~~Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~~tw 563 (650)
T KOG4334|consen 492 PYNILRDCLSRNLGWND-LVIKKEMIGNGN--QKSE-----VIMILGKHTEEAECKNKRQGKQLASQRILQKLHPHLLTW 563 (650)
T ss_pred HHHHHHHHHHhhcCCcc-eeeeeeccCCCC--ccce-----eEeeeccceeeeeeechhHHHHHHHHHHHHHhCHHhhhH
Confidence 47888888887766542 222234433332 2222 2222222 13455666666655556678999999
Q ss_pred HHHHHHhcCC
Q 038114 154 RSLLCACTSP 163 (170)
Q Consensus 154 ~~ll~~~~~~ 163 (170)
.+|++.|.+.
T Consensus 564 GSlLriYGr~ 573 (650)
T KOG4334|consen 564 GSLLRIYGRL 573 (650)
T ss_pred HHHHHHhhhh
Confidence 9999999875
No 449
>PRK12928 lipoyl synthase; Provisional
Probab=36.37 E-value=56 Score=24.03 Aligned_cols=78 Identities=10% Similarity=0.205 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHH
Q 038114 63 RKVHDHILSSKS---QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139 (170)
Q Consensus 63 ~~~~~~m~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~ 139 (170)
.+.+..+.++|. .-+..+-..+.+...+...+++..++++..++.+ |+..+-+.+|-|+ ....++..+.++
T Consensus 153 ~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~g----p~i~~~s~iIvG~--GET~ed~~etl~ 226 (290)
T PRK12928 153 RERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELA----PDIPTKSGLMLGL--GETEDEVIETLR 226 (290)
T ss_pred HHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhC----CCceecccEEEeC--CCCHHHHHHHHH
Confidence 345666666652 1011122456666666677888888888888765 3447777888886 456777788888
Q ss_pred HHHhCCC
Q 038114 140 EMRDREL 146 (170)
Q Consensus 140 ~m~~~~~ 146 (170)
.+.+.++
T Consensus 227 ~Lrel~~ 233 (290)
T PRK12928 227 DLRAVGC 233 (290)
T ss_pred HHHhcCC
Confidence 8876654
No 450
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=36.01 E-value=97 Score=18.46 Aligned_cols=66 Identities=17% Similarity=0.072 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHH
Q 038114 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138 (170)
Q Consensus 62 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~ 138 (170)
+..+++.+.+.| ..+..-|..+-. .....++|.++++....+|. ..|..++.++. ..+...+..++
T Consensus 25 v~~ilD~Ll~~~-Vlt~ee~e~I~~---~~t~~~qAr~Lld~l~~KG~------~A~~~F~~~L~-e~~~~L~~~L~ 90 (94)
T cd08329 25 VLPILDSLLSAN-VITEQEYDVIKQ---KTQTPLQARELIDTVLVKGN------AAAEVFRNCLK-KNDPVLYRDLF 90 (94)
T ss_pred hHHHHHHHHHcC-CCCHHHHHHHHc---CCChHHHHHHHHHHHHhhhH------HHHHHHHHHHH-hcCHhHHHHHH
Confidence 445777777777 345555544322 33345888888888887777 77777777773 34444444444
No 451
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=35.77 E-value=92 Score=18.12 Aligned_cols=40 Identities=8% Similarity=0.010 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 038114 59 LQLGRKVHDHILSS-KSQPDVVLQNYILNMYGKCGSLEDARVVS 101 (170)
Q Consensus 59 ~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 101 (170)
.+.+.+++....+. | ...|...|+.++.+.|.-+-|..+|
T Consensus 46 ~eq~~~mL~~W~~r~g---~~AT~~~L~~aL~~~~~~diae~l~ 86 (86)
T cd08318 46 KMQAKQLLVAWQDREG---SQATPETLITALNAAGLNEIAESLT 86 (86)
T ss_pred HHHHHHHHHHHHHhcC---ccccHHHHHHHHHHcCcHHHHHhhC
Confidence 44455555544443 2 2235566666666666655555543
No 452
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=35.54 E-value=2e+02 Score=21.94 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=49.1
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHHcCC-----CHHHHHHHHhhcccCCCCCCCCh
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILS----SKSQPDVVLQNYILNMYGKCG-----SLEDARVVSDEMPQRNVIESPDL 115 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~~~p~~ 115 (170)
..-..-.-|++.|+.+.|.+.+....+ .|...|+..+.+-+-.+.... .++.|..++++=-...- +-..
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeR--rNRl 183 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWER--RNRL 183 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhh--hhhH
Confidence 444455567777777777777665543 366777766666555443332 23444444443222211 2223
Q ss_pred hhHHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 116 ASWNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 116 ~~~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
-+|--+-.. ...++.+|-.+|-+-.
T Consensus 184 KvY~Gly~m--svR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 184 KVYQGLYCM--SVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHH--HHHhHHHHHHHHHHHc
Confidence 344444322 2346777777766554
No 453
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=35.51 E-value=44 Score=14.31 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=12.0
Q ss_pred chHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038114 58 SLQLGRKVHDHILSSKSQPDVVLQNYIL 85 (170)
Q Consensus 58 ~~~~a~~~~~~m~~~~~~~~~~~~~~li 85 (170)
+.+.+..+|+.+.... +-++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~-~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKF-PKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 3445555555555432 23344444433
No 454
>PF14162 YozD: YozD-like protein
Probab=35.19 E-value=72 Score=16.71 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCCCCCH--------hhHHHHHHHhc
Q 038114 132 NEAMSLFSEMRDRELIPDG--------LTVRSLLCACT 161 (170)
Q Consensus 132 ~~a~~l~~~m~~~~~~p~~--------~t~~~ll~~~~ 161 (170)
+-|.-.|.++.++|..|+. .||..|+.-|.
T Consensus 12 EIAefFy~eL~kRGyvP~e~El~eiADItFeYll~K~i 49 (57)
T PF14162_consen 12 EIAEFFYHELVKRGYVPTEEELEEIADITFEYLLEKCI 49 (57)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 3466678888888888865 35666665553
No 455
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.91 E-value=1.5e+02 Score=21.70 Aligned_cols=82 Identities=16% Similarity=0.069 Sum_probs=44.5
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhc-----CCCCCHHHHHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS-----KSQPDVVLQNYILNM 87 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~li~~ 87 (170)
.+..+...|++..|++++.+. +..= . ....|+++=+.- .++++.......+.+. -...|+..|..++.+
T Consensus 133 ~l~~ll~~~dy~~Al~li~~~-~~~l-~-~l~~~~c~~~L~---~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~A 206 (291)
T PF10475_consen 133 RLQELLEEGDYPGALDLIEEC-QQLL-E-ELKGYSCVRHLS---SQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEA 206 (291)
T ss_pred HHHHHHhcCCHHHHHHHHHHH-HHHH-H-hcccchHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 367777888888888888777 3320 0 111111111111 1233333333333222 126788889999999
Q ss_pred HHcCCCHHHHHHH
Q 038114 88 YGKCGSLEDARVV 100 (170)
Q Consensus 88 ~~~~~~~~~a~~~ 100 (170)
|.--|+.+.+.+-
T Consensus 207 Y~lLgk~~~~~dk 219 (291)
T PF10475_consen 207 YQLLGKTQSAMDK 219 (291)
T ss_pred HHHHhhhHHHHHH
Confidence 8888876665543
No 456
>PRK14700 recombination factor protein RarA; Provisional
Probab=34.84 E-value=1.9e+02 Score=21.54 Aligned_cols=55 Identities=11% Similarity=0.002 Sum_probs=31.5
Q ss_pred cccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC-----HHHHHHHHhhcccCCC
Q 038114 55 SLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS-----LEDARVVSDEMPQRNV 109 (170)
Q Consensus 55 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~m~~~~~ 109 (170)
|..+++.|.-++..|.+.|-.|....-..++-++--.|. ...|...++....-|.
T Consensus 138 RGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 138 RGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred hcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 345677777777777777766655555555555555552 3344444444444444
No 457
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=34.82 E-value=52 Score=20.80 Aligned_cols=27 Identities=7% Similarity=0.163 Sum_probs=17.1
Q ss_pred ccchHHHHHHHHHHHhcCCCCCHHHHH
Q 038114 56 LRSLQLGRKVHDHILSSKSQPDVVLQN 82 (170)
Q Consensus 56 ~~~~~~a~~~~~~m~~~~~~~~~~~~~ 82 (170)
.|+...+.++++.++..|..|....|.
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep~~lLw~ 36 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEPPILLWA 36 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCccHHHHHHH
Confidence 367777777777777777777666554
No 458
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=34.68 E-value=56 Score=15.28 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=13.5
Q ss_pred chHHHHHHHHHHHhcCCCCCHHHHH
Q 038114 58 SLQLGRKVHDHILSSKSQPDVVLQN 82 (170)
Q Consensus 58 ~~~~a~~~~~~m~~~~~~~~~~~~~ 82 (170)
+++.|..+|+..... .|++.+|-
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHH
Confidence 356666777766654 35555553
No 459
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.41 E-value=2e+02 Score=21.50 Aligned_cols=112 Identities=9% Similarity=-0.043 Sum_probs=69.5
Q ss_pred HHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 038114 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91 (170)
Q Consensus 12 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 91 (170)
.+..+|...|+.+.|..++..+ -..--.........-|....+.....+...+-...-.. +-|...--.+-..+...
T Consensus 173 ~la~~~l~~g~~e~A~~iL~~l-P~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~ 249 (304)
T COG3118 173 LLAECLLAAGDVEAAQAILAAL-PLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLV 249 (304)
T ss_pred HHHHHHHHcCChHHHHHHHHhC-cccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 3688999999999999999998 32222222223334455555555555555555555432 22566667777888899
Q ss_pred CCHHHHHHHHhhcccC--CCCCCCChhhHHHHHHHHhCCC
Q 038114 92 GSLEDARVVSDEMPQR--NVIESPDLASWNAIIAGVASPS 129 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~--~~~~~p~~~~~~~li~~~~~~g 129 (170)
|+.+.|.+.+-.+..+ |. -|...=..++..+.--|
T Consensus 250 g~~e~Ale~Ll~~l~~d~~~---~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 250 GRNEAALEHLLALLRRDRGF---EDGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHHHHHhcccc---cCcHHHHHHHHHHHhcC
Confidence 9999988876655433 33 23344555665555555
No 460
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=34.30 E-value=92 Score=27.32 Aligned_cols=62 Identities=13% Similarity=0.018 Sum_probs=36.0
Q ss_pred cCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhh
Q 038114 90 KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152 (170)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t 152 (170)
....+.+++++|..|-+.|+. .-....|-..-..+.+.+.|.+|..+|..-.+....|-...
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg-~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL 151 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIG-TTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERL 151 (974)
T ss_pred HHHHHhhHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHH
Confidence 344566677777777666663 22233455555556666667777777666655555554443
No 461
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=33.79 E-value=3e+02 Score=23.45 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=31.3
Q ss_pred hhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCc
Q 038114 116 ASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165 (170)
Q Consensus 116 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 165 (170)
.+.++++++ ++.++++.|+..+..|.+.|.-|....=..++-+.-.-|.
T Consensus 260 d~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigl 308 (725)
T PRK13341 260 DTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGL 308 (725)
T ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 444555554 4557888888888888888877765555555544444443
No 462
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=33.66 E-value=42 Score=26.45 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhh
Q 038114 91 CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152 (170)
Q Consensus 91 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t 152 (170)
...+++|+++-++-...|. ..+ .|-.-.|-+++.++.++|++||..|
T Consensus 216 a~~ldeAl~~a~~~~~ag~--p~S-------------Igl~GNaaei~~~l~~r~~~pD~vt 262 (561)
T COG2987 216 AETLDEALALAEEATAAGE--PIS-------------IGLLGNAAEILPELLRRGIRPDLVT 262 (561)
T ss_pred cCCHHHHHHHHHHHHhcCC--ceE-------------EEEeccHHHHHHHHHHcCCCCceec
Confidence 3567777777777666555 211 1333456677777777777777655
No 463
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=33.54 E-value=2.7e+02 Score=23.51 Aligned_cols=68 Identities=10% Similarity=0.113 Sum_probs=43.1
Q ss_pred CCCCcchhhHHHHHHHhhcccc----hHHHHHHHHHHHhc----CCCCCHH---HHHHHHHHHHcCCCHHH---HHHHHh
Q 038114 37 TNFRIRPSTYACLISTCSSLRS----LQLGRKVHDHILSS----KSQPDVV---LQNYILNMYGKCGSLED---ARVVSD 102 (170)
Q Consensus 37 ~~~~p~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~----~~~~~~~---~~~~li~~~~~~~~~~~---a~~~~~ 102 (170)
.|++.|...|..|+.++-...+ .+++.++.+-++.. |+.+..+ .-..+.+-|..+|+.+. |...+.
T Consensus 211 dgyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tge~~LL~~a~~~L~ 290 (677)
T PF05664_consen 211 DGYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATGEPDLLKAAIQQLQ 290 (677)
T ss_pred cCCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5788899999999999876433 46666777666653 5554321 22356677888887544 444444
Q ss_pred hc
Q 038114 103 EM 104 (170)
Q Consensus 103 ~m 104 (170)
+.
T Consensus 291 ev 292 (677)
T PF05664_consen 291 EV 292 (677)
T ss_pred HH
Confidence 43
No 464
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=33.48 E-value=2e+02 Score=21.40 Aligned_cols=125 Identities=10% Similarity=0.024 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHH
Q 038114 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC---GSLEDARV 99 (170)
Q Consensus 23 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~ 99 (170)
.+.-+.++++. .+.+ +-+.......|..+.+..+.+...+-|+.+.... +-+...|-..|...... -.++...+
T Consensus 47 ~E~klsilerA-L~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERA-LKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 45667788887 5553 2456678888999999999999999999998863 22677888888776552 24555555
Q ss_pred HHhhc-------ccCCC-CCCCChhhHHHH-------HHHHhCCCChHHHHHHHHHHHhCCC-CCCH
Q 038114 100 VSDEM-------PQRNV-IESPDLASWNAI-------IAGVASPSNANEAMSLFSEMRDREL-IPDG 150 (170)
Q Consensus 100 ~~~~m-------~~~~~-~~~p~~~~~~~l-------i~~~~~~g~~~~a~~l~~~m~~~~~-~p~~ 150 (170)
+|.+- ..... ...+-..+...+ ..-+...|..+.|..+++-+.+.++ .|+.
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~ 190 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPES 190 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccc
Confidence 55432 22210 001122223333 3445778999999999999988774 4544
No 465
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=33.29 E-value=2e+02 Score=21.60 Aligned_cols=73 Identities=5% Similarity=0.036 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCC----CCHHHHH-HHHHHHHcCC-CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHH
Q 038114 63 RKVHDHILSSKSQ----PDVVLQN-YILNMYGKCG-SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136 (170)
Q Consensus 63 ~~~~~~m~~~~~~----~~~~~~~-~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 136 (170)
.+.++.|++.|+. -...+++ .+.+..+..+ .+++..+..+..++.|+ .+.+.+|-+.. +.+++..+
T Consensus 141 ~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi------~v~s~~i~G~~--Et~ed~~~ 212 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGI------PTTATIMYGHV--ETPEHWVD 212 (343)
T ss_pred HHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCC------cccceEEEecC--CCHHHHHH
Confidence 4677777777753 1223442 3333344433 56777777777777777 34444444433 34455444
Q ss_pred HHHHHHh
Q 038114 137 LFSEMRD 143 (170)
Q Consensus 137 l~~~m~~ 143 (170)
.+..+++
T Consensus 213 ~l~~lr~ 219 (343)
T TIGR03551 213 HLLILRE 219 (343)
T ss_pred HHHHHHH
Confidence 4444443
No 466
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=33.27 E-value=3.2e+02 Score=23.69 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHH
Q 038114 24 NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHIL 70 (170)
Q Consensus 24 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 70 (170)
+...+++.++.+..|+..+...+..++.... |+...++..++++.
T Consensus 182 ~~l~~~L~~il~~EGv~id~eal~lLa~~sg--GdlR~Al~eLEKLi 226 (824)
T PRK07764 182 EVMRGYLERICAQEGVPVEPGVLPLVIRAGG--GSVRDSLSVLDQLL 226 (824)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence 3444444444255677777777766666653 66777777777665
No 467
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.04 E-value=47 Score=26.89 Aligned_cols=18 Identities=17% Similarity=0.503 Sum_probs=15.8
Q ss_pred hCCCChHHHHHHHHHHHh
Q 038114 126 ASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 126 ~~~g~~~~a~~l~~~m~~ 143 (170)
+|....++-+++|+||.+
T Consensus 314 ~R~~~vEenl~iw~EM~k 331 (712)
T KOG1147|consen 314 CRSNSVEENLRIWEEMKK 331 (712)
T ss_pred ccCCCHHHHHHHHHHHhc
Confidence 777889999999999985
No 468
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=32.96 E-value=2.2e+02 Score=21.67 Aligned_cols=31 Identities=19% Similarity=0.128 Sum_probs=14.6
Q ss_pred cchhhHHHHHHHhhcccchHHHHHHHHHHHh
Q 038114 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILS 71 (170)
Q Consensus 41 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 71 (170)
||......++++.+...........+..+.+
T Consensus 228 ~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~ 258 (340)
T PF12069_consen 228 PDLELLSALLRALSSAPASDLVAILIDALLQ 258 (340)
T ss_pred CCHHHHHHHHHHHcCCCchhHHHHHHHHHhc
Confidence 5555555555555554444444343444443
No 469
>COG5210 GTPase-activating protein [General function prediction only]
Probab=32.87 E-value=2.6e+02 Score=22.39 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCC
Q 038114 64 KVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 64 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 109 (170)
+++..+++.|+.+...++.-++..+.+.-.++.|.++++.+--.|.
T Consensus 363 ~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~ 408 (496)
T COG5210 363 ELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGS 408 (496)
T ss_pred HHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 4777788888888888888888888888888888887777655544
No 470
>PHA02743 Viral ankyrin protein; Provisional
Probab=32.67 E-value=1.5e+02 Score=19.49 Aligned_cols=86 Identities=8% Similarity=0.025 Sum_probs=46.3
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcch---hhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHH---HHHHHHH
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRP---STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL---QNYILNM 87 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~ 87 (170)
+...++.|+.+...++++.+ ...|..++. .-.+.+.-++ ..|..+ ...+.+.+.+.|..++... -.+.+..
T Consensus 24 l~~a~~~g~~~~l~~~~~~l-~~~g~~~~~~d~~g~t~Lh~Aa-~~g~~~-~~~~i~~Ll~~Gadin~~d~~~g~TpLh~ 100 (166)
T PHA02743 24 FLRICRTGNIYELMEVAPFI-SGDGHLLHRYDHHGRQCTHMVA-WYDRAN-AVMKIELLVNMGADINARELGTGNTLLHI 100 (166)
T ss_pred HHHHHHcCCHHHHHHHHHHH-hhcchhhhccCCCCCcHHHHHH-HhCccC-HHHHHHHHHHcCCCCCCCCCCCCCcHHHH
Confidence 33345778888777777776 555543322 2233333333 334332 2234455666776666432 2345555
Q ss_pred HHcCCCHHHHHHHHh
Q 038114 88 YGKCGSLEDARVVSD 102 (170)
Q Consensus 88 ~~~~~~~~~a~~~~~ 102 (170)
.+..|+.+-+.-++.
T Consensus 101 A~~~g~~~iv~~Ll~ 115 (166)
T PHA02743 101 AASTKNYELAEWLCR 115 (166)
T ss_pred HHHhCCHHHHHHHHh
Confidence 556777766665554
No 471
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.47 E-value=1.1e+02 Score=17.95 Aligned_cols=24 Identities=4% Similarity=-0.061 Sum_probs=11.4
Q ss_pred HHHhhcccchHHHHHHHHHHHhcC
Q 038114 50 ISTCSSLRSLQLGRKVHDHILSSK 73 (170)
Q Consensus 50 i~~~~~~~~~~~a~~~~~~m~~~~ 73 (170)
+..+.+..-.++|+++.+.|.+.|
T Consensus 38 ~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 38 IDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 333344444455555555555544
No 472
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=32.41 E-value=2.1e+02 Score=21.31 Aligned_cols=82 Identities=9% Similarity=0.082 Sum_probs=48.0
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccC----CCC---------CCCChhhHHHHHHHHhCCCCh
Q 038114 65 VHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQR----NVI---------ESPDLASWNAIIAGVASPSNA 131 (170)
Q Consensus 65 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~---------~~p~~~~~~~li~~~~~~g~~ 131 (170)
+-+...+.|+..+......|+...+ ++...+..-++++.-. +.+ ......+.-.++.+. -.|+.
T Consensus 151 i~~~~~~~g~~i~~~a~~~L~~~~g--~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if~l~dai-~~~~~ 227 (343)
T PRK06585 151 IDDELAEAGLRITPDARALLVALLG--GDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAADAA-LAGDL 227 (343)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHHHHHHHH-HCCCH
Confidence 4445556788888888887777765 3544444444443211 110 011111222344444 44899
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 038114 132 NEAMSLFSEMRDRELIPD 149 (170)
Q Consensus 132 ~~a~~l~~~m~~~~~~p~ 149 (170)
.+|..+++.+...|..|-
T Consensus 228 ~~a~~~l~~ll~~g~~p~ 245 (343)
T PRK06585 228 AAFERALDRALAEGTAPV 245 (343)
T ss_pred HHHHHHHHHHHHcCCCHH
Confidence 999999999999998774
No 473
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=32.40 E-value=1.5e+02 Score=19.83 Aligned_cols=82 Identities=10% Similarity=0.024 Sum_probs=55.7
Q ss_pred chHHHHHHHHHHHhcC----CCCCH---HHHHHHHHHHHcCCCHHHHHHHHhhccc-CCCCCCCChhhHHHHHHHHhCCC
Q 038114 58 SLQLGRKVHDHILSSK----SQPDV---VLQNYILNMYGKCGSLEDARVVSDEMPQ-RNVIESPDLASWNAIIAGVASPS 129 (170)
Q Consensus 58 ~~~~a~~~~~~m~~~~----~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~p~~~~~~~li~~~~~~g 129 (170)
+-++|..+|..+.+.. +.++. ...-..+..+.+..++ +++..+.. .|+ .|...++..++..+++.-
T Consensus 108 ~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p----~l~~~l~~~~~i--~~~~~~~~W~~~lF~~~~ 181 (199)
T smart00164 108 DEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYDP----DLYKHLKDKLGI--DPSLYALRWFLTLFAREL 181 (199)
T ss_pred CHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHCH----HHHHHHHHhcCC--CchhHHHHHHHHHHHhhC
Confidence 3556777777765532 33442 2333344444444443 45556664 778 888899999999999988
Q ss_pred ChHHHHHHHHHHHhCC
Q 038114 130 NANEAMSLFSEMRDRE 145 (170)
Q Consensus 130 ~~~~a~~l~~~m~~~~ 145 (170)
.++.+.++|+.+...|
T Consensus 182 ~~~~~~riwD~~l~eG 197 (199)
T smart00164 182 PLEIVLRIWDVLFAEG 197 (199)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999988776
No 474
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=32.34 E-value=1.7e+02 Score=23.68 Aligned_cols=92 Identities=10% Similarity=-0.007 Sum_probs=57.0
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHH
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~ 124 (170)
.++.-+.++++.|..+-.++++..=-+.+ -+++..-++-+...++.|+..+|+-+|-.=-.-|. ||..-..-++.+
T Consensus 132 ~LsrQLhasvRt~nlet~LRll~lGA~~N-~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a---~d~~GmtP~~~A 207 (669)
T KOG0818|consen 132 DLSKQLHSSVRTGNLETCLRLLSLGAQAN-FFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGA---QDSSGMTPVDYA 207 (669)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHcccccC-CCCcccCCchhHHHHhccchhhhhHHhhccCCCCC---CCCCCCcHHHHH
Confidence 45566777888888877777665443333 44666777788888888888888777654333332 444444444433
Q ss_pred HhCCCChHHHHHHHHHH
Q 038114 125 VASPSNANEAMSLFSEM 141 (170)
Q Consensus 125 ~~~~g~~~~a~~l~~~m 141 (170)
-..|..+.|+++++-+
T Consensus 208 -R~~gH~~laeRl~e~~ 223 (669)
T KOG0818|consen 208 -RQGGHHELAERLVEIQ 223 (669)
T ss_pred -HhcCchHHHHHHHHHH
Confidence 3345666677666544
No 475
>PF14744 WASH-7_mid: WASH complex subunit 7
Probab=32.30 E-value=79 Score=23.98 Aligned_cols=31 Identities=16% Similarity=0.088 Sum_probs=25.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHh
Q 038114 130 NANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160 (170)
Q Consensus 130 ~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~ 160 (170)
-++.|+.+.+++++.|+.||..||--..+..
T Consensus 281 p~erAekf~k~irkLG~~~dG~sylD~FR~L 311 (350)
T PF14744_consen 281 PYERAEKFNKGIRKLGLSDDGQSYLDQFRQL 311 (350)
T ss_pred CHHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Confidence 4788999999999999999999987655543
No 476
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=32.19 E-value=3.9e+02 Score=24.30 Aligned_cols=20 Identities=0% Similarity=0.042 Sum_probs=9.4
Q ss_pred HHHhhcccchHHHHHHHHHH
Q 038114 50 ISTCSSLRSLQLGRKVHDHI 69 (170)
Q Consensus 50 i~~~~~~~~~~~a~~~~~~m 69 (170)
+.+|..+|++.+|..+..++
T Consensus 972 l~a~~~~~dWr~~l~~a~ql 991 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQL 991 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhh
Confidence 44444444555444444444
No 477
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=32.05 E-value=2.9e+02 Score=25.04 Aligned_cols=79 Identities=18% Similarity=0.077 Sum_probs=44.9
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchhhH----HHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTY----ACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYG 89 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 89 (170)
+.+|-.+|+|.+|+.+-.++ .++..-+ -.|..-+...++.-+|-++..+.... ..-.+..|+
T Consensus 972 l~a~~~~~dWr~~l~~a~ql------~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ 1037 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQL------SEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLC 1037 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhh------cCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHh
Confidence 44555555555555555555 2222222 35666667777777777776666432 122344556
Q ss_pred cCCCHHHHHHHHhhccc
Q 038114 90 KCGSLEDARVVSDEMPQ 106 (170)
Q Consensus 90 ~~~~~~~a~~~~~~m~~ 106 (170)
+...|++|.++...-..
T Consensus 1038 ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1038 KAKEWEEALRVASKAKR 1054 (1265)
T ss_pred hHhHHHHHHHHHHhccc
Confidence 66678888877766553
No 478
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=32.02 E-value=1.8e+02 Score=22.42 Aligned_cols=51 Identities=14% Similarity=0.036 Sum_probs=37.6
Q ss_pred hhhcccCCHHHHHHHHHHHHhhCCCCc-chhhHHHHHHHhhcccchHHHHHHHHH
Q 038114 15 NSQPIQNLYNEALVAFDFLQNNTNFRI-RPSTYACLISTCSSLRSLQLGRKVHDH 68 (170)
Q Consensus 15 ~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~ 68 (170)
.-|.+.|.+++|+..|..- -. .-| |++++.---.+|.+...+..|+.=-..
T Consensus 105 N~yFKQgKy~EAIDCYs~~-ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~ 156 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTA-IA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEA 156 (536)
T ss_pred hhhhhccchhHHHHHhhhh-hc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHH
Confidence 4578899999999999775 32 334 888888888888888877766544333
No 479
>COG5210 GTPase-activating protein [General function prediction only]
Probab=31.92 E-value=1.3e+02 Score=24.05 Aligned_cols=60 Identities=5% Similarity=-0.101 Sum_probs=48.1
Q ss_pred HHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038114 98 RVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159 (170)
Q Consensus 98 ~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~ 159 (170)
-+++..+...|+ .+...++..++..+.+.-..+.|.++++-+--.|..-....+.+++..
T Consensus 362 p~l~~hl~~~~~--~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~~ 421 (496)
T COG5210 362 PELYEHLLREGV--VLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKL 421 (496)
T ss_pred HHHHHHHHHcCC--chhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 356778888888 899999999999999999999999999998877766555555544443
No 480
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.61 E-value=2.9e+02 Score=22.59 Aligned_cols=21 Identities=10% Similarity=-0.032 Sum_probs=16.7
Q ss_pred HHhhhcccCCHHHHHHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFL 33 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m 33 (170)
++..|.+.+++++|..++..|
T Consensus 414 L~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhC
Confidence 677788888888888888777
No 481
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=31.38 E-value=1.7e+02 Score=20.57 Aligned_cols=61 Identities=8% Similarity=-0.057 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhCCCCcchhhHHHHHHHhhccc-chHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHc
Q 038114 26 ALVAFDFLQNNTNFRIRPSTYACLISTCSSLR-SLQLGRKVHDHILSSKSQPD---VVLQNYILNMYGK 90 (170)
Q Consensus 26 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~ 90 (170)
|-.++-.+-.+..+.||..|...+-+...-.+ ++++..++|..= ++.+ -..|.++|..+++
T Consensus 128 aDsILlYa~~rp~FVvD~Yt~R~l~rlg~i~~k~ydeik~~fe~~----l~~~~~lyqe~HAlIv~~~K 192 (215)
T COG2231 128 ADSILLYALDRPVFVVDKYTRRLLSRLGGIEEKKYDEIKELFEEN----LPENLRLYQEFHALIVEHAK 192 (215)
T ss_pred HHHHHHHHhcCcccchhHHHHHHHHHhcccccccHHHHHHHHHhc----chhHHHHHHHHHHHHHHHHH
Confidence 33444443244456666666666655554444 466655555542 2222 3355566666554
No 482
>COG0819 TenA Putative transcription activator [Transcription]
Probab=31.07 E-value=1.9e+02 Score=20.37 Aligned_cols=55 Identities=5% Similarity=-0.053 Sum_probs=35.4
Q ss_pred CCCcchhhHHHHHHHhhcccchHHHHH-----------HHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 38 NFRIRPSTYACLISTCSSLRSLQLGRK-----------VHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 38 ~~~p~~~~~~~li~~~~~~~~~~~a~~-----------~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
...|....|+.-|...+..|++.+... +...+.+.+.......|...|+.|+...
T Consensus 104 ~~~~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~~~~Y~~Wi~~Y~s~e 169 (218)
T COG0819 104 EPSPANKAYTRYLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKPRASPNPPYQEWIDTYASEE 169 (218)
T ss_pred CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcHHHHHHHcCCHH
Confidence 344666689999999999998765543 2233333333234567888888887643
No 483
>PF11459 DUF2893: Protein of unknwon function (DUF2893); InterPro: IPR021561 This is a bacterial family of uncharacterised proteins.
Probab=30.68 E-value=1.1e+02 Score=17.27 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=35.4
Q ss_pred chhHhHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHH
Q 038114 7 TQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHIL 70 (170)
Q Consensus 7 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 70 (170)
....+.++....+.-.+++|..+|+-+ ..+.+.....|+..|.+. ++.++|-.+-
T Consensus 4 ErA~LE~l~~~p~~~s~e~a~~l~egL-----~nLrp~~lq~LL~~C~sv----KvkRLfl~lA 58 (69)
T PF11459_consen 4 ERAILELLSEVPKRQSFEEADELMEGL-----RNLRPRVLQELLEHCTSV----KVKRLFLYLA 58 (69)
T ss_pred HHHHHHHHHhCCccCCHHHHHHHHHHH-----hhcCHHHHHHHHHHCccH----HHHHHHHHHH
Confidence 334444666777777788888888888 345666777888877654 3444555443
No 484
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.23 E-value=3e+02 Score=22.27 Aligned_cols=81 Identities=9% Similarity=0.079 Sum_probs=54.4
Q ss_pred HHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCC--CC---------CCCChhhHHHHHHHHhCCCChHHHHHH
Q 038114 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN--VI---------ESPDLASWNAIIAGVASPSNANEAMSL 137 (170)
Q Consensus 69 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~---------~~p~~~~~~~li~~~~~~g~~~~a~~l 137 (170)
+.+.|+..+......++... .|++..|..+++.....| .+ ..++....-.++.++.. |+.+.++.+
T Consensus 191 l~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d~~~~l~~ 267 (509)
T PRK14958 191 LKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA-KAGDRLLGC 267 (509)
T ss_pred HHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHHH
Confidence 34567777777766665543 588888888887644322 11 12344445556666555 899999999
Q ss_pred HHHHHhCCCCCCHhh
Q 038114 138 FSEMRDRELIPDGLT 152 (170)
Q Consensus 138 ~~~m~~~~~~p~~~t 152 (170)
+++|...|..|....
T Consensus 268 ~~~l~~~g~~~~~il 282 (509)
T PRK14958 268 VTRLVEQGVDFSNAL 282 (509)
T ss_pred HHHHHHcCCCHHHHH
Confidence 999999998875433
No 485
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=29.97 E-value=70 Score=23.51 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=23.7
Q ss_pred cchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCC
Q 038114 57 RSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 57 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 109 (170)
..++..+.+++..++. .|+..|=+.+|-+++.. .++..++.+++...|+
T Consensus 194 A~Y~~SL~~L~~~k~~--~P~i~TKSgiMlGLGEt--~~Ev~e~m~DLr~~gv 242 (306)
T COG0320 194 ATYERSLSLLERAKEL--GPDIPTKSGLMVGLGET--DEEVIEVMDDLRSAGV 242 (306)
T ss_pred CcHHHHHHHHHHHHHh--CCCcccccceeeecCCc--HHHHHHHHHHHHHcCC
Confidence 3455555555555543 34455555555544332 3444445555544443
No 486
>PRK09857 putative transposase; Provisional
Probab=29.92 E-value=2.3e+02 Score=20.92 Aligned_cols=63 Identities=13% Similarity=-0.033 Sum_probs=43.2
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCC
Q 038114 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 46 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 109 (170)
+.++++-....++.++..++++.+.+. ........-++..-+-+.|.-+++.++..+|...|+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~ 271 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGV 271 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 556666666677777777888777665 233333444555666666777788888999988888
No 487
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=29.57 E-value=74 Score=17.18 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHhCCCCC
Q 038114 131 ANEAMSLFSEMRDRELIP 148 (170)
Q Consensus 131 ~~~a~~l~~~m~~~~~~p 148 (170)
.+...++|+-|.++|+.|
T Consensus 44 ~~~~~~l~~~m~~kGwY~ 61 (64)
T PF07875_consen 44 QQMQYELFNYMNQKGWYQ 61 (64)
T ss_pred HHHHHHHHHHHHHcCCcC
Confidence 445666777777777544
No 488
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=29.03 E-value=2.9e+02 Score=21.86 Aligned_cols=90 Identities=13% Similarity=0.025 Sum_probs=60.3
Q ss_pred HhhhcccCCHHHHHHHHHHHHhh---CCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNN---TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYG- 89 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~---~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~- 89 (170)
-.-..++|++..|.+.|.+. .. .+..|+...|.-.-.+..+.|+..+|..--++..+- . +..+...+.++-|
T Consensus 256 gN~~fk~G~y~~A~E~Ytea-l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D-~syikall~ra~c~ 331 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEA-LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--D-SSYIKALLRRANCH 331 (486)
T ss_pred hhhHhhccchhHHHHHHHHh-hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--C-HHHHHHHHHHHHHH
Confidence 34457889999999999886 43 345566667777777778889999888877766532 2 2334444444433
Q ss_pred -cCCCHHHHHHHHhhcccC
Q 038114 90 -KCGSLEDARVVSDEMPQR 107 (170)
Q Consensus 90 -~~~~~~~a~~~~~~m~~~ 107 (170)
-.+.|++|.+-|+...+.
T Consensus 332 l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 346788888888765443
No 489
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=29.03 E-value=3.6e+02 Score=22.94 Aligned_cols=89 Identities=16% Similarity=0.102 Sum_probs=58.4
Q ss_pred HHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCC--CC---------CCCChhhHHHHHHHHhC
Q 038114 60 QLGRKVHDHI-LSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN--VI---------ESPDLASWNAIIAGVAS 127 (170)
Q Consensus 60 ~~a~~~~~~m-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~---------~~p~~~~~~~li~~~~~ 127 (170)
++....+... .+.|+..+......+++.. .|++..|..+++.....+ .+ -..+......++.++..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~ 258 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN 258 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc
Confidence 4444444444 3457887877777776655 588888888887654321 11 02333445566666665
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHh
Q 038114 128 PSNANEAMSLFSEMRDRELIPDGL 151 (170)
Q Consensus 128 ~g~~~~a~~l~~~m~~~~~~p~~~ 151 (170)
++...++.++++|...|+.+...
T Consensus 259 -~d~~~al~~l~~L~~~G~d~~~~ 281 (709)
T PRK08691 259 -QDGAALLAKAQEMAACAVGFDNA 281 (709)
T ss_pred -CCHHHHHHHHHHHHHhCCCHHHH
Confidence 89999999999999999876543
No 490
>PHA02884 ankyrin repeat protein; Provisional
Probab=28.99 E-value=2.4e+02 Score=20.93 Aligned_cols=82 Identities=6% Similarity=-0.070 Sum_probs=42.1
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchh------hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHH---HHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPS------TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV---LQNY 83 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ 83 (170)
++...++.|+.+ +.+.+ .+.|..|+.. -..+.+...++.+..+ +.+.+.+.|..++.. ...+
T Consensus 36 lL~~A~~~~~~e----ivk~L-L~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~e----ivklLL~~GADVN~~~~~~g~T 106 (300)
T PHA02884 36 ILYSSIKFHYTD----IIDAI-LKLGADPEAPFPLSENSKTNPLIYAIDCDNDD----AAKLLIRYGADVNRYAEEAKIT 106 (300)
T ss_pred HHHHHHHcCCHH----HHHHH-HHCCCCccccCcccCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCcCcccCCCCCC
Confidence 455555555544 33344 4555555542 2334444445566655 445555677776652 1234
Q ss_pred HHHHHHcCCCHHHHHHHHhh
Q 038114 84 ILNMYGKCGSLEDARVVSDE 103 (170)
Q Consensus 84 li~~~~~~~~~~~a~~~~~~ 103 (170)
.+...+..|..+-+.-++..
T Consensus 107 pLh~Aa~~~~~eivklLL~~ 126 (300)
T PHA02884 107 PLYISVLHGCLKCLEILLSY 126 (300)
T ss_pred HHHHHHHcCCHHHHHHHHHC
Confidence 45555556666655555443
No 491
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=28.96 E-value=4.1e+02 Score=23.48 Aligned_cols=26 Identities=4% Similarity=0.072 Sum_probs=12.7
Q ss_pred HHHHHHhhccc--chHHHHHHHHHHHhc
Q 038114 47 ACLISTCSSLR--SLQLGRKVHDHILSS 72 (170)
Q Consensus 47 ~~li~~~~~~~--~~~~a~~~~~~m~~~ 72 (170)
..+|.+|++.+ ++++|+....++++.
T Consensus 816 ~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 816 QPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 34444454444 455555555555433
No 492
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=28.89 E-value=1.6e+02 Score=22.77 Aligned_cols=53 Identities=9% Similarity=0.001 Sum_probs=36.9
Q ss_pred HHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHH----HHHh--CCCChHHHHHHHHH
Q 038114 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII----AGVA--SPSNANEAMSLFSE 140 (170)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li----~~~~--~~g~~~~a~~l~~~ 140 (170)
+.+.+.+++..|.++|+++.+... .|+...+-..+ .+|. ..-++++|.+.++.
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l--~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLL--SAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhccc--ChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 355678999999999999998876 56655533333 3332 23478888888874
No 493
>cd00045 DED The Death Effector Domain: a protein-protein interaction domain. Death Effector Domains comprise a subfamily of the Death Domain (DD) superfamily. DED-containing proteins include Fas-Associated via Death Domain (FADD), Astrocyte phosphoprotein PEA-15, the initiator caspases (caspase-8 and -10), and FLICE-inhibitory protein (FLIP), among others. These proteins are prominent components of the programmed cell death (apoptosis) pathway. Some members also have non-apoptotic functions such as regulation of insulin signaling (DEDD and PEA15) and cell cycle progression (DEDD). DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes.
Probab=28.74 E-value=1.1e+02 Score=17.40 Aligned_cols=15 Identities=0% Similarity=-0.146 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHhcC
Q 038114 59 LQLGRKVHDHILSSK 73 (170)
Q Consensus 59 ~~~a~~~~~~m~~~~ 73 (170)
...+.++|..+.+.|
T Consensus 36 ~~s~l~lf~~Le~~~ 50 (77)
T cd00045 36 IKTPFDLFLVLERQG 50 (77)
T ss_pred cCCHHHHHHHHHHcC
Confidence 344455555555554
No 494
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=28.37 E-value=1.5e+02 Score=19.27 Aligned_cols=38 Identities=5% Similarity=0.005 Sum_probs=20.9
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHH
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLIST 52 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 52 (170)
+..+.+.+.+..+.++.+.+ ++.|+..+..|..-.|.-
T Consensus 7 i~~Li~~~~i~tqeeL~~~L-~~~G~~vsqaTIsRdL~e 44 (146)
T TIGR01529 7 IKEIITEEKISTQEELVALL-KAEGIEVTQATVSRDLRE 44 (146)
T ss_pred HHHHHHcCCCCCHHHHHHHH-HHhCCCcCHHHHHHHHHH
Confidence 44445555555566666666 555665555555544443
No 495
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=28.13 E-value=1.5e+02 Score=19.91 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHhh----CCCCcchh---hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 038114 21 NLYNEALVAFDFLQNN----TNFRIRPS---TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS 93 (170)
Q Consensus 21 ~~~~~a~~~~~~m~~~----~~~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 93 (170)
.+..+|..++..+ -. .-+.++.. .....+..+.+.-.++ ++..+.+.|+.+....+.-++..+.+.=.
T Consensus 105 ~~e~~af~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~----l~~~l~~~~~~~~~~~~~w~~~lF~~~l~ 179 (214)
T PF00566_consen 105 LDEEEAFWCFVQL-LNYYLPDFFQPNFKGLQKILKIFEQLLKKHDPE----LYNHLKQLGVDPEIYAFPWFLTLFSRSLP 179 (214)
T ss_dssp SHHHHHHHHHHHH-HTHHGGGGTSTTHHHHHHHHHHHHHHHHHHTHH----HHHHHHHTT-GGHHHHHHHHHTTTTTTS-
T ss_pred ccccchhccccch-hcccccccccccccccchhhhhHHHHHHhhhhh----hhhhhhhhhhhhhhhhhhhhHhhcCCcCC
Confidence 3445567777666 41 12233322 2222333333333343 66777778888888888888888888888
Q ss_pred HHHHHHHHhhcc
Q 038114 94 LEDARVVSDEMP 105 (170)
Q Consensus 94 ~~~a~~~~~~m~ 105 (170)
.+.+.++|+-+.
T Consensus 180 ~~~~~~lwD~l~ 191 (214)
T PF00566_consen 180 FDDVLRLWDFLL 191 (214)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888444
No 496
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=28.03 E-value=2.4e+02 Score=20.47 Aligned_cols=54 Identities=11% Similarity=-0.018 Sum_probs=33.5
Q ss_pred hhcccchHHHHHHHHHHHhcC-CCC-----CHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 038114 53 CSSLRSLQLGRKVHDHILSSK-SQP-----DVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106 (170)
Q Consensus 53 ~~~~~~~~~a~~~~~~m~~~~-~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 106 (170)
|.+.|+++.|-.++--+...+ ... +...-.-|+......++|+.+.++.+=++.
T Consensus 189 cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ 248 (258)
T PF07064_consen 189 CLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKA 248 (258)
T ss_pred HHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 334566666666555554332 222 344555677777888999999988776553
No 497
>PF13606 Ank_3: Ankyrin repeat
Probab=27.74 E-value=69 Score=14.22 Aligned_cols=7 Identities=14% Similarity=0.221 Sum_probs=2.7
Q ss_pred HHHhcCC
Q 038114 68 HILSSKS 74 (170)
Q Consensus 68 ~m~~~~~ 74 (170)
.+.+.|.
T Consensus 20 ~Ll~~ga 26 (30)
T PF13606_consen 20 YLLEHGA 26 (30)
T ss_pred HHHHcCC
Confidence 3333443
No 498
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=27.56 E-value=60 Score=25.51 Aligned_cols=53 Identities=11% Similarity=-0.026 Sum_probs=41.7
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCC---CcchhhHHHHHHHhhcccchHHHHHHHH
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNF---RIRPSTYACLISTCSSLRSLQLGRKVHD 67 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~~~~~~a~~~~~ 67 (170)
-.-+++.|+......+|+.. .+.|. +.-+.+|+.|=++|.-.+++++|++.+.
T Consensus 24 GERLck~gdcraGv~ff~aA-~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAA-LQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHHHhccchhhhHHHHHHH-HHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 45578999999999999998 77664 2334467778888888899999998765
No 499
>smart00031 DED Death effector domain.
Probab=27.48 E-value=1.3e+02 Score=17.16 Aligned_cols=37 Identities=3% Similarity=-0.138 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 038114 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97 (170)
Q Consensus 60 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 97 (170)
..+.++|..+.+.+. .+......|...+...++.+.+
T Consensus 38 ~~~ldlf~~Le~~~~-l~~~nl~~L~elL~~i~R~DLl 74 (79)
T smart00031 38 KTFLDLFSALEEQGL-LSEDNLSLLAELLYRLRRLDLL 74 (79)
T ss_pred CCHHHHHHHHHHcCC-CCCccHHHHHHHHHHcCHHHHH
Confidence 444555555555442 2223333344444444444443
No 500
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=27.34 E-value=2.2e+02 Score=19.82 Aligned_cols=121 Identities=10% Similarity=0.099 Sum_probs=60.6
Q ss_pred hHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchh-hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038114 11 FTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPS-TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYG 89 (170)
Q Consensus 11 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 89 (170)
+++++.|...|+++.|.+.|.-+ .+.. .+|.. .|..=+....+.+.-.... .-++-++..|.
T Consensus 45 ~~lLh~~llr~d~~rA~Raf~lL-iR~~-~VDiR~~W~iG~eIL~~~~~~~~~~---------------~fl~~l~~~y~ 107 (199)
T PF04090_consen 45 TDLLHLCLLRGDWDRAYRAFGLL-IRCP-EVDIRSLWGIGAEILMRRGEQNSEL---------------EFLEWLISFYP 107 (199)
T ss_pred HHHHHHHHHhccHHHHHHHHHHH-HcCC-CCChHhcchHHHHHHHcCCCcchHH---------------HHHHHHHHHHH
Confidence 34899999999999999999998 4432 23333 2333333333333322222 34555555555
Q ss_pred cCCCHHHHHHHH--hhcccCCCC-CCCCh---hhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCC
Q 038114 90 KCGSLEDARVVS--DEMPQRNVI-ESPDL---ASWNAIIAGVASPSNANEAMSLFSEMRDRELIP 148 (170)
Q Consensus 90 ~~~~~~~a~~~~--~~m~~~~~~-~~p~~---~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p 148 (170)
......+...-. .-.-..|.. ..|.- ..|..++..-.+....+++.++.++|.+.=+.|
T Consensus 108 ~~~~~~~~~~~~~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~P 172 (199)
T PF04090_consen 108 SRKAFNQYYNRRIIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSP 172 (199)
T ss_pred HhhhccchhhhhcccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCC
Confidence 433322211111 111111220 02221 123444444445556777888888887764444
Done!