Query 038114
Match_columns 170
No_of_seqs 174 out of 1312
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 13:02:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 3.6E-38 1.2E-42 240.8 16.2 160 7-169 25-194 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.1E-35 3.9E-40 227.0 16.8 157 5-164 58-224 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 1.8E-27 6.1E-32 189.8 5.0 121 42-164 126-250 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.9 4.2E-26 1.4E-30 182.0 7.3 150 8-164 127-286 (1134)
5 2xpi_A Anaphase-promoting comp 99.7 6.5E-16 2.2E-20 119.4 14.0 153 10-168 409-568 (597)
6 2xpi_A Anaphase-promoting comp 99.7 4.8E-16 1.7E-20 120.1 13.1 157 7-169 372-535 (597)
7 1w3b_A UDP-N-acetylglucosamine 99.3 1.5E-10 5.2E-15 85.1 15.6 121 43-168 237-357 (388)
8 2y4t_A DNAJ homolog subfamily 99.3 9.4E-11 3.2E-15 87.5 14.6 156 7-169 25-196 (450)
9 1w3b_A UDP-N-acetylglucosamine 99.3 7.6E-10 2.6E-14 81.3 17.5 148 8-163 237-386 (388)
10 3as5_A MAMA; tetratricopeptide 99.2 2.1E-10 7.1E-15 75.2 12.4 153 9-168 9-162 (186)
11 3mkr_A Coatomer subunit epsilo 99.2 1.3E-10 4.5E-15 83.0 12.0 86 13-105 71-157 (291)
12 2fo7_A Synthetic consensus TPR 99.2 7.5E-10 2.6E-14 68.6 14.0 128 11-144 4-132 (136)
13 2vq2_A PILW, putative fimbrial 99.2 6E-10 2E-14 75.3 14.4 154 9-168 9-165 (225)
14 1b89_A Protein (clathrin heavy 99.2 1.2E-12 3.9E-17 97.9 0.8 139 6-168 30-195 (449)
15 2ho1_A Type 4 fimbrial biogene 99.2 5E-10 1.7E-14 77.4 13.8 149 13-167 43-192 (252)
16 2ho1_A Type 4 fimbrial biogene 99.2 5.9E-10 2E-14 77.0 13.8 155 8-168 71-227 (252)
17 2y4t_A DNAJ homolog subfamily 99.2 2.9E-10 1E-14 84.8 12.4 156 7-169 59-230 (450)
18 2vq2_A PILW, putative fimbrial 99.2 1.1E-09 3.7E-14 74.0 13.8 156 8-168 42-200 (225)
19 2q7f_A YRRB protein; TPR, prot 99.2 1.2E-09 4.1E-14 74.8 14.1 155 8-169 57-212 (243)
20 2pl2_A Hypothetical conserved 99.2 6.8E-10 2.3E-14 75.8 11.8 149 13-169 45-204 (217)
21 1b89_A Protein (clathrin heavy 99.1 1.7E-11 5.7E-16 91.7 3.4 127 13-169 100-226 (449)
22 3vtx_A MAMA; tetratricopeptide 99.1 2.9E-09 1E-13 70.3 13.7 154 9-169 6-160 (184)
23 3mkr_A Coatomer subunit epsilo 99.1 2.6E-09 8.9E-14 76.2 13.2 142 13-167 107-251 (291)
24 4eqf_A PEX5-related protein; a 99.1 5.5E-10 1.9E-14 81.4 9.6 151 13-169 105-300 (365)
25 4eqf_A PEX5-related protein; a 99.1 4.5E-10 1.5E-14 81.8 8.9 151 13-168 183-345 (365)
26 3uq3_A Heat shock protein STI1 99.1 1E-09 3.6E-14 75.6 10.4 151 13-168 44-225 (258)
27 2pl2_A Hypothetical conserved 99.1 9.2E-09 3.2E-13 70.1 14.8 154 8-169 5-170 (217)
28 2q7f_A YRRB protein; TPR, prot 99.1 1.1E-09 3.8E-14 75.0 10.2 153 10-169 25-178 (243)
29 3cv0_A Peroxisome targeting si 99.1 1.4E-09 4.9E-14 77.5 10.7 148 16-169 147-305 (327)
30 3uq3_A Heat shock protein STI1 99.1 1.6E-09 5.6E-14 74.6 10.7 151 13-168 11-191 (258)
31 1fch_A Peroxisomal targeting s 99.1 1.6E-09 5.5E-14 78.7 10.9 151 14-169 188-349 (368)
32 3hym_B Cell division cycle pro 99.1 5.9E-09 2E-13 74.3 13.6 154 9-168 91-254 (330)
33 1fch_A Peroxisomal targeting s 99.1 2.3E-09 7.8E-14 77.9 11.2 150 13-168 104-303 (368)
34 3as5_A MAMA; tetratricopeptide 99.0 1.9E-08 6.5E-13 65.6 14.3 132 7-144 41-173 (186)
35 3hym_B Cell division cycle pro 99.0 6E-09 2E-13 74.3 12.3 156 9-168 126-288 (330)
36 2fo7_A Synthetic consensus TPR 99.0 1.2E-08 4.2E-13 63.0 11.3 120 45-169 3-122 (136)
37 4gyw_A UDP-N-acetylglucosamine 99.0 1.6E-08 5.6E-13 80.5 14.4 155 7-169 8-164 (723)
38 2gw1_A Mitochondrial precursor 99.0 7.1E-09 2.4E-13 78.3 11.6 152 9-168 238-390 (514)
39 1xnf_A Lipoprotein NLPI; TPR, 99.0 6.4E-09 2.2E-13 72.4 10.5 121 18-143 16-139 (275)
40 3cv0_A Peroxisome targeting si 99.0 1.4E-08 4.8E-13 72.3 12.0 112 53-169 148-259 (327)
41 3nf1_A KLC 1, kinesin light ch 98.9 6.9E-09 2.3E-13 73.4 10.1 160 8-169 27-214 (311)
42 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.5E-07 5.3E-12 63.2 16.3 144 11-160 10-166 (213)
43 3edt_B KLC 2, kinesin light ch 98.9 3.8E-09 1.3E-13 73.6 7.7 135 8-144 43-198 (283)
44 3fp2_A TPR repeat-containing p 98.9 3.7E-08 1.3E-12 75.0 13.3 148 13-168 249-396 (537)
45 2gw1_A Mitochondrial precursor 98.9 2.9E-08 9.8E-13 75.0 12.4 156 8-168 304-467 (514)
46 4i17_A Hypothetical protein; T 98.9 8.4E-08 2.9E-12 65.4 13.4 147 11-164 11-167 (228)
47 3ieg_A DNAJ homolog subfamily 98.9 6E-08 2E-12 69.7 13.2 150 13-168 43-206 (359)
48 3ieg_A DNAJ homolog subfamily 98.9 4.9E-08 1.7E-12 70.2 12.7 150 13-168 9-172 (359)
49 2ond_A Cleavage stimulation fa 98.9 1.4E-07 4.7E-12 67.5 14.9 154 8-168 99-259 (308)
50 3nf1_A KLC 1, kinesin light ch 98.9 1E-08 3.4E-13 72.5 8.5 133 9-143 70-223 (311)
51 1xnf_A Lipoprotein NLPI; TPR, 98.9 5.4E-08 1.8E-12 67.7 11.8 130 8-144 43-173 (275)
52 3u4t_A TPR repeat-containing p 98.9 3.5E-07 1.2E-11 63.5 16.0 149 10-165 39-191 (272)
53 3vtx_A MAMA; tetratricopeptide 98.8 4.1E-07 1.4E-11 59.8 14.5 136 7-150 38-174 (184)
54 4abn_A Tetratricopeptide repea 98.8 4.1E-08 1.4E-12 74.6 10.5 150 10-164 139-306 (474)
55 3u4t_A TPR repeat-containing p 98.8 1.4E-07 5E-12 65.5 12.0 140 11-157 7-149 (272)
56 1ouv_A Conserved hypothetical 98.7 8.5E-07 2.9E-11 62.0 14.6 121 13-145 12-144 (273)
57 4abn_A Tetratricopeptide repea 98.7 8.5E-08 2.9E-12 72.8 10.0 154 9-169 103-277 (474)
58 1na0_A Designed protein CTPR3; 98.7 4.1E-07 1.4E-11 55.3 11.2 97 44-144 10-106 (125)
59 1ouv_A Conserved hypothetical 98.7 3E-06 1E-10 59.2 16.5 128 20-162 91-230 (273)
60 2ond_A Cleavage stimulation fa 98.7 1.3E-06 4.4E-11 62.4 14.7 143 19-169 69-222 (308)
61 3edt_B KLC 2, kinesin light ch 98.7 1.1E-07 3.6E-12 66.2 8.2 152 17-169 11-188 (283)
62 3fp2_A TPR repeat-containing p 98.6 7.4E-07 2.5E-11 67.7 13.2 131 8-144 276-407 (537)
63 4ga2_A E3 SUMO-protein ligase 98.6 3.5E-07 1.2E-11 58.7 9.6 142 15-165 5-149 (150)
64 2vyi_A SGTA protein; chaperone 98.6 1.1E-06 3.8E-11 53.8 11.5 118 43-165 12-129 (131)
65 1na0_A Designed protein CTPR3; 98.6 1E-06 3.5E-11 53.5 11.0 97 8-107 9-106 (125)
66 2h6f_A Protein farnesyltransfe 98.6 5E-07 1.7E-11 66.9 11.0 147 9-162 98-246 (382)
67 2ooe_A Cleavage stimulation fa 98.6 2.2E-06 7.6E-11 65.7 14.6 154 8-168 321-481 (530)
68 1a17_A Serine/threonine protei 98.6 1E-06 3.5E-11 56.5 10.8 128 9-142 14-144 (166)
69 4gyw_A UDP-N-acetylglucosamine 98.6 1.7E-06 5.8E-11 69.0 13.4 130 8-143 43-173 (723)
70 2lni_A Stress-induced-phosphop 98.6 1.8E-06 6.3E-11 53.1 11.0 97 43-143 16-112 (133)
71 3mv2_B Coatomer subunit epsilo 98.5 5.5E-07 1.9E-11 64.6 9.1 136 26-169 85-230 (310)
72 3mv2_B Coatomer subunit epsilo 98.5 3.2E-06 1.1E-10 60.7 12.9 146 13-165 106-270 (310)
73 2vsy_A XCC0866; transferase, g 98.5 9.4E-07 3.2E-11 68.4 10.9 132 8-145 23-158 (568)
74 2vsy_A XCC0866; transferase, g 98.5 3.7E-06 1.3E-10 65.0 14.1 142 20-168 2-146 (568)
75 3qky_A Outer membrane assembly 98.5 1.6E-06 5.6E-11 60.2 10.9 151 9-163 17-198 (261)
76 1qqe_A Vesicular transport pro 98.5 7E-07 2.4E-11 63.4 9.1 157 11-168 40-217 (292)
77 2ooe_A Cleavage stimulation fa 98.5 3.6E-06 1.2E-10 64.5 13.6 142 20-168 292-443 (530)
78 2kck_A TPR repeat; tetratricop 98.5 4.2E-06 1.4E-10 49.7 11.1 98 45-144 8-106 (112)
79 2e2e_A Formate-dependent nitri 98.5 3.1E-06 1.1E-10 55.2 11.2 126 14-145 17-145 (177)
80 2vyi_A SGTA protein; chaperone 98.5 2.9E-06 9.8E-11 51.8 10.4 117 9-131 13-130 (131)
81 3u3w_A Transcriptional activat 98.5 1.3E-06 4.6E-11 61.9 9.8 150 13-165 81-251 (293)
82 2lni_A Stress-induced-phosphop 98.5 5.6E-06 1.9E-10 50.8 11.4 114 7-126 15-129 (133)
83 2r5s_A Uncharacterized protein 98.4 3.9E-07 1.4E-11 59.8 6.1 150 12-168 11-162 (176)
84 1p5q_A FKBP52, FK506-binding p 98.4 4E-06 1.4E-10 60.9 11.6 129 9-142 148-292 (336)
85 2h6f_A Protein farnesyltransfe 98.4 5.5E-06 1.9E-10 61.3 12.2 150 7-164 130-288 (382)
86 3gyz_A Chaperone protein IPGC; 98.4 4.4E-06 1.5E-10 53.7 10.3 98 44-145 37-134 (151)
87 4gco_A Protein STI-1; structur 98.4 1.3E-05 4.5E-10 49.7 12.2 95 45-143 15-109 (126)
88 2qfc_A PLCR protein; TPR, HTH, 98.4 1.1E-05 3.8E-10 57.1 13.2 155 13-169 81-255 (293)
89 3qou_A Protein YBBN; thioredox 98.4 1.4E-06 4.6E-11 61.9 8.2 149 13-168 123-273 (287)
90 1elr_A TPR2A-domain of HOP; HO 98.4 3.2E-06 1.1E-10 51.7 8.9 99 45-144 6-108 (131)
91 4i17_A Hypothetical protein; T 98.4 7E-06 2.4E-10 55.7 11.3 123 41-168 5-135 (228)
92 2yhc_A BAMD, UPF0169 lipoprote 98.4 8.1E-06 2.8E-10 55.6 11.6 159 7-169 4-203 (225)
93 1elw_A TPR1-domain of HOP; HOP 98.4 2.3E-05 7.7E-10 46.8 12.2 91 13-106 10-100 (118)
94 3q49_B STIP1 homology and U bo 98.4 1.3E-05 4.5E-10 49.7 11.2 98 42-143 8-105 (137)
95 1a17_A Serine/threonine protei 98.3 3.9E-06 1.3E-10 53.7 8.6 98 44-145 14-111 (166)
96 1elw_A TPR1-domain of HOP; HOP 98.3 3.7E-05 1.3E-09 45.9 12.5 100 42-145 3-102 (118)
97 2vgx_A Chaperone SYCD; alterna 98.3 1.1E-05 3.6E-10 51.6 10.5 98 43-144 21-118 (148)
98 3upv_A Heat shock protein STI1 98.3 1.2E-05 4.2E-10 49.3 10.5 94 46-143 7-100 (126)
99 2xcb_A PCRH, regulatory protei 98.3 1.2E-05 4.1E-10 50.7 10.4 96 45-144 20-115 (142)
100 2pzi_A Probable serine/threoni 98.3 4.2E-06 1.4E-10 66.4 9.8 87 18-106 402-495 (681)
101 2r5s_A Uncharacterized protein 98.3 1.2E-05 3.9E-10 52.6 10.5 129 8-142 40-171 (176)
102 2kck_A TPR repeat; tetratricop 98.3 2.3E-05 7.9E-10 46.4 11.0 98 9-109 7-108 (112)
103 3ulq_A Response regulator aspa 98.3 4.5E-06 1.5E-10 61.2 9.1 155 14-169 110-283 (383)
104 3gw4_A Uncharacterized protein 98.3 1.6E-06 5.6E-11 57.5 6.1 83 19-103 4-91 (203)
105 3sz7_A HSC70 cochaperone (SGT) 98.3 1.4E-05 4.9E-10 51.5 10.4 97 8-107 11-108 (164)
106 1xi4_A Clathrin heavy chain; a 98.3 1.6E-05 5.5E-10 67.1 12.6 136 6-168 1103-1239(1630)
107 4gco_A Protein STI-1; structur 98.3 3.3E-05 1.1E-09 47.9 11.5 95 10-107 15-110 (126)
108 1qqe_A Vesicular transport pro 98.3 8.2E-06 2.8E-10 57.9 9.7 132 9-143 78-227 (292)
109 2pzi_A Probable serine/threoni 98.3 4.2E-06 1.4E-10 66.4 9.0 148 9-165 434-583 (681)
110 2dba_A Smooth muscle cell asso 98.3 7E-05 2.4E-09 46.7 13.1 98 42-144 27-128 (148)
111 1hh8_A P67PHOX, NCF-2, neutrop 98.2 1.2E-05 4.2E-10 53.7 9.4 116 46-168 9-139 (213)
112 3k9i_A BH0479 protein; putativ 98.2 2.8E-06 9.7E-11 51.8 5.6 85 20-106 3-89 (117)
113 3rjv_A Putative SEL1 repeat pr 98.2 0.00027 9.3E-09 47.6 16.0 137 12-160 23-172 (212)
114 3gyz_A Chaperone protein IPGC; 98.2 2.3E-05 7.8E-10 50.4 9.9 92 13-107 42-133 (151)
115 4ga2_A E3 SUMO-protein ligase 98.2 2.8E-05 9.5E-10 49.6 10.3 114 11-130 35-149 (150)
116 3qky_A Outer membrane assembly 98.2 1.6E-05 5.5E-10 55.1 9.8 132 11-144 56-224 (261)
117 3urz_A Uncharacterized protein 98.2 4.2E-06 1.5E-10 56.4 6.5 90 14-107 11-117 (208)
118 3q15_A PSP28, response regulat 98.2 1.9E-05 6.3E-10 57.9 10.3 155 10-168 184-354 (378)
119 2dba_A Smooth muscle cell asso 98.2 0.0001 3.5E-09 45.9 12.5 97 7-107 27-128 (148)
120 2ifu_A Gamma-SNAP; membrane fu 98.2 5.6E-06 1.9E-10 59.1 7.2 127 14-142 43-182 (307)
121 2fbn_A 70 kDa peptidylprolyl i 98.2 2.3E-05 7.9E-10 52.1 9.8 126 13-143 44-185 (198)
122 3ulq_A Response regulator aspa 98.2 5E-05 1.7E-09 55.6 12.3 153 10-165 145-318 (383)
123 3q15_A PSP28, response regulat 98.1 3.5E-05 1.2E-09 56.4 11.1 149 13-165 147-315 (378)
124 3u3w_A Transcriptional activat 98.1 3.7E-05 1.3E-09 54.4 10.9 127 13-142 121-264 (293)
125 3k9i_A BH0479 protein; putativ 98.1 3.5E-06 1.2E-10 51.4 4.9 105 55-162 2-109 (117)
126 1elr_A TPR2A-domain of HOP; HO 98.1 3.7E-05 1.2E-09 46.8 9.5 106 10-121 6-118 (131)
127 3gw4_A Uncharacterized protein 98.1 1.3E-05 4.5E-10 53.0 7.9 134 9-144 27-176 (203)
128 1wao_1 Serine/threonine protei 98.1 4.6E-06 1.6E-10 63.5 6.1 121 13-139 12-134 (477)
129 2vgx_A Chaperone SYCD; alterna 98.1 5.2E-05 1.8E-09 48.3 10.1 92 13-107 27-118 (148)
130 3sz7_A HSC70 cochaperone (SGT) 98.1 8.3E-05 2.8E-09 47.8 11.2 100 41-144 9-108 (164)
131 3urz_A Uncharacterized protein 98.1 9.1E-05 3.1E-09 49.7 11.8 137 13-158 60-198 (208)
132 1p5q_A FKBP52, FK506-binding p 98.1 1.6E-05 5.5E-10 57.6 8.4 122 42-167 146-281 (336)
133 2xcb_A PCRH, regulatory protei 98.1 6E-05 2E-09 47.4 10.2 92 13-107 24-115 (142)
134 3q49_B STIP1 homology and U bo 98.1 9.8E-05 3.3E-09 45.6 11.0 98 7-107 8-106 (137)
135 4gcn_A Protein STI-1; structur 98.1 7.6E-05 2.6E-09 46.2 10.2 97 46-143 11-111 (127)
136 3upv_A Heat shock protein STI1 98.1 0.0001 3.4E-09 45.1 10.7 95 10-107 6-101 (126)
137 4a1s_A PINS, partner of inscut 98.1 2.6E-06 8.7E-11 62.7 3.9 152 13-167 54-240 (411)
138 4a1s_A PINS, partner of inscut 98.1 3E-06 1E-10 62.4 4.2 155 13-168 132-321 (411)
139 3ro3_A PINS homolog, G-protein 98.1 1.4E-05 4.8E-10 50.5 6.9 129 13-143 15-157 (164)
140 4f3v_A ESX-1 secretion system 98.1 7.3E-05 2.5E-09 52.9 10.9 137 12-156 107-247 (282)
141 3qou_A Protein YBBN; thioredox 98.0 3.3E-05 1.1E-09 54.7 9.0 125 12-141 156-281 (287)
142 2yhc_A BAMD, UPF0169 lipoprote 98.0 0.00011 3.9E-09 49.8 11.2 134 10-145 44-214 (225)
143 3sf4_A G-protein-signaling mod 98.0 7.3E-06 2.5E-10 59.9 5.5 155 13-168 93-285 (406)
144 2c2l_A CHIP, carboxy terminus 98.0 0.00016 5.6E-09 50.9 12.3 95 10-107 6-101 (281)
145 1hxi_A PEX5, peroxisome target 98.0 4.3E-05 1.5E-09 47.0 8.1 89 50-142 24-112 (121)
146 2fbn_A 70 kDa peptidylprolyl i 98.0 8.9E-05 3E-09 49.2 10.1 144 16-165 13-171 (198)
147 3ro2_A PINS homolog, G-protein 98.0 8.7E-06 3E-10 57.6 4.9 155 13-168 89-281 (338)
148 2xev_A YBGF; tetratricopeptide 98.0 0.00018 6.1E-09 43.9 10.2 93 12-106 7-104 (129)
149 3sf4_A G-protein-signaling mod 97.9 3.5E-05 1.2E-09 56.2 7.8 156 10-166 189-363 (406)
150 2xev_A YBGF; tetratricopeptide 97.9 0.00019 6.5E-09 43.8 10.0 97 47-145 6-106 (129)
151 1hz4_A MALT regulatory protein 97.9 0.00032 1.1E-08 51.0 12.7 153 13-168 141-311 (373)
152 2ifu_A Gamma-SNAP; membrane fu 97.9 7E-05 2.4E-09 53.4 9.0 131 10-142 78-222 (307)
153 2qfc_A PLCR protein; TPR, HTH, 97.9 0.00033 1.1E-08 49.4 12.3 128 13-142 121-264 (293)
154 1hxi_A PEX5, peroxisome target 97.9 8.7E-05 3E-09 45.5 8.2 93 12-107 22-114 (121)
155 3ro2_A PINS homolog, G-protein 97.9 2.7E-05 9.3E-10 55.0 6.6 131 13-144 189-332 (338)
156 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00015 5.2E-09 54.7 10.9 128 10-142 270-413 (457)
157 1wao_1 Serine/threonine protei 97.9 9E-05 3.1E-09 56.3 9.5 115 51-169 14-129 (477)
158 1xi4_A Clathrin heavy chain; a 97.9 0.0003 1E-08 59.7 13.0 141 7-168 1133-1298(1630)
159 3n71_A Histone lysine methyltr 97.9 0.00012 4E-09 56.0 9.6 129 14-144 316-464 (490)
160 2e2e_A Formate-dependent nitri 97.8 0.00044 1.5E-08 44.8 11.2 100 7-109 43-146 (177)
161 1hz4_A MALT regulatory protein 97.8 0.00013 4.4E-09 53.1 9.3 153 13-168 99-271 (373)
162 4gcn_A Protein STI-1; structur 97.8 0.00021 7.3E-09 44.1 9.1 96 9-106 9-111 (127)
163 2xm6_A Protein corresponding t 97.8 0.0013 4.3E-08 49.9 14.7 114 20-145 56-181 (490)
164 2if4_A ATFKBP42; FKBP-like, al 97.8 0.00016 5.5E-09 52.4 9.4 125 13-144 185-328 (338)
165 1klx_A Cysteine rich protein B 97.8 0.00084 2.9E-08 42.1 11.5 117 16-146 4-128 (138)
166 2xm6_A Protein corresponding t 97.8 0.0017 5.8E-08 49.2 14.7 113 20-144 92-216 (490)
167 3rkv_A Putative peptidylprolyl 97.7 0.00044 1.5E-08 44.2 9.8 92 13-106 17-125 (162)
168 1ihg_A Cyclophilin 40; ppiase 97.7 0.00028 9.7E-09 51.9 9.0 92 13-106 229-335 (370)
169 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00014 4.8E-09 54.9 7.6 118 43-165 268-400 (457)
170 2c2l_A CHIP, carboxy terminus 97.6 0.0009 3.1E-08 47.1 10.6 98 42-143 3-100 (281)
171 4g1t_A Interferon-induced prot 97.6 0.0011 3.7E-08 49.6 11.4 108 59-169 316-449 (472)
172 2l6j_A TPR repeat-containing p 97.6 0.0005 1.7E-08 40.6 7.9 65 42-107 3-67 (111)
173 3rkv_A Putative peptidylprolyl 97.6 0.0017 5.9E-08 41.4 11.0 110 43-157 11-138 (162)
174 3rjv_A Putative SEL1 repeat pr 97.6 0.0071 2.4E-07 40.5 14.1 127 12-147 55-200 (212)
175 2kat_A Uncharacterized protein 97.5 0.00062 2.1E-08 40.8 7.7 63 42-105 18-80 (115)
176 1ihg_A Cyclophilin 40; ppiase 97.5 0.00035 1.2E-08 51.4 7.6 114 45-163 225-354 (370)
177 4b4t_Q 26S proteasome regulato 97.5 0.0026 8.8E-08 46.9 11.9 157 12-168 60-234 (434)
178 4e6h_A MRNA 3'-END-processing 97.5 0.0037 1.3E-07 49.7 13.1 144 10-160 436-584 (679)
179 2l6j_A TPR repeat-containing p 97.4 0.00063 2.2E-08 40.1 6.9 92 8-103 4-103 (111)
180 3ro3_A PINS homolog, G-protein 97.4 0.00011 3.8E-09 46.2 3.6 125 44-168 10-147 (164)
181 4b4t_Q 26S proteasome regulato 97.4 0.00096 3.3E-08 49.3 9.0 153 14-168 11-193 (434)
182 1na3_A Designed protein CTPR2; 97.3 0.002 6.9E-08 36.4 7.7 52 52-104 18-69 (91)
183 4g1t_A Interferon-induced prot 97.3 0.0027 9.3E-08 47.4 10.3 127 17-149 223-368 (472)
184 3ma5_A Tetratricopeptide repea 97.3 0.00074 2.5E-08 39.7 5.8 62 78-142 7-68 (100)
185 2if4_A ATFKBP42; FKBP-like, al 97.3 0.0032 1.1E-07 45.6 10.0 95 44-143 180-292 (338)
186 2hr2_A Hypothetical protein; a 97.3 0.0018 6E-08 41.9 7.6 91 13-104 17-128 (159)
187 4e6h_A MRNA 3'-END-processing 97.2 0.0016 5.5E-08 51.7 8.8 149 13-167 384-558 (679)
188 2kat_A Uncharacterized protein 97.2 0.0036 1.2E-07 37.3 8.5 80 61-144 3-82 (115)
189 1na3_A Designed protein CTPR2; 97.2 0.0026 8.8E-08 35.9 7.2 80 77-160 8-87 (91)
190 2hr2_A Hypothetical protein; a 97.2 0.006 2E-07 39.4 9.4 111 45-157 13-149 (159)
191 4f3v_A ESX-1 secretion system 97.1 0.0017 5.9E-08 45.9 7.0 116 48-168 107-226 (282)
192 3e4b_A ALGK; tetratricopeptide 97.1 0.041 1.4E-06 41.4 14.5 94 45-145 178-281 (452)
193 3n71_A Histone lysine methyltr 97.0 0.0023 8E-08 48.9 7.7 91 53-143 319-421 (490)
194 3qww_A SET and MYND domain-con 97.0 0.005 1.7E-07 46.3 9.3 85 57-142 312-409 (433)
195 3ma5_A Tetratricopeptide repea 97.0 0.0043 1.5E-07 36.3 7.2 60 44-104 8-67 (100)
196 3qww_A SET and MYND domain-con 97.0 0.0022 7.7E-08 48.2 7.1 87 18-105 309-409 (433)
197 3qwp_A SET and MYND domain-con 97.0 0.0026 8.8E-08 47.8 7.2 93 50-142 294-398 (429)
198 3qwp_A SET and MYND domain-con 96.9 0.0064 2.2E-07 45.7 9.2 91 13-104 293-397 (429)
199 3e4b_A ALGK; tetratricopeptide 96.3 0.21 7.3E-06 37.4 16.1 121 11-146 217-353 (452)
200 2kc7_A BFR218_protein; tetratr 96.2 0.017 5.8E-07 33.2 6.1 58 13-72 6-64 (99)
201 1zu2_A Mitochondrial import re 96.2 0.0043 1.5E-07 40.0 3.7 115 17-144 12-147 (158)
202 2kc7_A BFR218_protein; tetratr 96.2 0.029 9.8E-07 32.1 7.0 59 50-109 7-66 (99)
203 3mkq_A Coatomer beta'-subunit; 96.2 0.026 8.9E-07 45.1 8.6 27 78-104 681-707 (814)
204 2uy1_A Cleavage stimulation fa 96.1 0.1 3.4E-06 39.9 11.2 122 10-143 288-412 (493)
205 1v54_E Cytochrome C oxidase po 95.9 0.12 3.9E-06 30.6 8.2 68 53-123 19-87 (109)
206 1zu2_A Mitochondrial import re 95.8 0.031 1E-06 36.0 6.0 103 54-162 13-136 (158)
207 3dra_A Protein farnesyltransfe 95.6 0.38 1.3E-05 34.3 14.8 135 6-143 142-286 (306)
208 1dce_A Protein (RAB geranylger 95.5 0.67 2.3E-05 36.0 14.9 139 23-168 89-244 (567)
209 3mkq_B Coatomer subunit alpha; 95.4 0.22 7.5E-06 32.6 9.0 47 17-70 15-61 (177)
210 2v5f_A Prolyl 4-hydroxylase su 95.2 0.16 5.6E-06 29.7 7.6 66 42-107 4-75 (104)
211 2ff4_A Probable regulatory pro 95.1 0.12 4.2E-06 38.1 8.2 70 82-154 175-249 (388)
212 3u64_A Protein TP_0956; tetrat 95.1 0.42 1.4E-05 34.0 10.3 95 59-157 179-284 (301)
213 2y69_E Cytochrome C oxidase su 95.1 0.28 9.6E-06 30.6 8.2 47 59-105 69-115 (152)
214 1klx_A Cysteine rich protein B 95.0 0.32 1.1E-05 30.0 10.8 90 13-109 31-128 (138)
215 2v5f_A Prolyl 4-hydroxylase su 94.9 0.16 5.4E-06 29.8 6.9 72 75-150 2-79 (104)
216 3dra_A Protein farnesyltransfe 94.6 0.84 2.9E-05 32.5 14.8 84 57-144 124-215 (306)
217 3ly7_A Transcriptional activat 94.5 0.78 2.7E-05 33.7 11.0 76 75-156 274-349 (372)
218 3bee_A Putative YFRE protein; 94.4 0.37 1.3E-05 27.7 9.6 67 42-109 5-74 (93)
219 1pc2_A Mitochondria fission pr 94.2 0.11 3.9E-06 33.1 5.4 84 21-107 12-100 (152)
220 1pc2_A Mitochondria fission pr 94.1 0.2 7E-06 31.9 6.3 89 56-150 11-104 (152)
221 4gns_B Protein CSD3, chitin bi 93.8 0.61 2.1E-05 37.6 9.8 125 13-141 254-397 (754)
222 3mkq_A Coatomer beta'-subunit; 93.8 0.44 1.5E-05 38.0 9.2 49 15-70 660-708 (814)
223 1v54_E Cytochrome C oxidase po 93.6 0.61 2.1E-05 27.5 9.0 64 93-159 25-88 (109)
224 1wy6_A Hypothetical protein ST 93.6 0.8 2.7E-05 28.9 9.0 63 81-146 94-156 (172)
225 2ff4_A Probable regulatory pro 93.6 0.35 1.2E-05 35.7 7.7 71 48-121 176-251 (388)
226 3ly7_A Transcriptional activat 93.4 0.36 1.2E-05 35.5 7.4 74 40-119 274-347 (372)
227 3bee_A Putative YFRE protein; 93.1 0.68 2.3E-05 26.5 8.9 68 75-145 3-73 (93)
228 3u64_A Protein TP_0956; tetrat 92.8 1.4 4.9E-05 31.3 9.4 114 6-122 152-284 (301)
229 2uy1_A Cleavage stimulation fa 91.5 0.78 2.7E-05 34.9 7.4 122 10-144 215-349 (493)
230 4h7y_A Dual specificity protei 91.2 1.9 6.6E-05 27.5 8.0 111 8-124 13-137 (161)
231 3q7a_A Farnesyltransferase alp 91.2 3.3 0.00011 30.1 13.0 45 96-143 185-236 (349)
232 1wy6_A Hypothetical protein ST 91.1 1.7 5.8E-05 27.4 7.2 86 17-109 71-156 (172)
233 2y69_E Cytochrome C oxidase su 90.9 1.9 6.5E-05 27.0 9.0 64 93-159 68-131 (152)
234 1dce_A Protein (RAB geranylger 90.6 5 0.00017 31.2 13.4 133 20-160 42-188 (567)
235 3lvg_A Clathrin heavy chain 1; 90.4 0.005 1.7E-07 47.0 -5.4 146 5-168 51-217 (624)
236 3q7a_A Farnesyltransferase alp 90.1 4.2 0.00014 29.6 14.2 141 18-165 65-216 (349)
237 1nzn_A CGI-135 protein, fissio 89.1 2.6 9E-05 25.8 7.9 83 57-143 15-102 (126)
238 2nsz_A Programmed cell death p 87.5 3.5 0.00012 25.3 7.6 23 47-69 11-33 (129)
239 2ion_A PDCD4, programmed cell 87.2 2.4 8.3E-05 26.9 6.2 63 46-109 12-76 (152)
240 4fhn_B Nucleoporin NUP120; pro 87.0 5.5 0.00019 33.8 9.8 116 13-134 848-990 (1139)
241 4h7y_A Dual specificity protei 87.0 3 0.0001 26.6 6.4 59 91-152 73-131 (161)
242 3esl_A Checkpoint serine/threo 86.6 5 0.00017 26.8 7.6 76 37-114 71-149 (202)
243 3ygs_P Procaspase 9; apoptosis 84.9 4 0.00014 23.6 6.2 66 64-137 25-90 (97)
244 3esl_A Checkpoint serine/threo 84.2 7.2 0.00025 26.0 7.9 77 74-151 73-151 (202)
245 3mkq_B Coatomer subunit alpha; 83.8 7 0.00024 25.5 9.3 51 51-107 13-63 (177)
246 1zbp_A Hypothetical protein VP 83.0 3.1 0.00011 29.2 5.5 55 52-107 6-60 (273)
247 1nzn_A CGI-135 protein, fissio 82.4 5 0.00017 24.6 5.8 83 22-107 16-103 (126)
248 3dss_A Geranylgeranyl transfer 81.9 12 0.00042 26.9 10.9 134 5-144 105-267 (331)
249 4b4t_R RPN7, 26S proteasome re 81.0 7.3 0.00025 29.1 7.4 57 13-70 137-195 (429)
250 1k1a_A B-cell lymphoma 3-encod 79.1 2.2 7.5E-05 28.3 3.8 91 10-105 9-103 (241)
251 3mwm_A ZUR, putative metal upt 79.1 2 6.9E-05 26.7 3.3 49 120-168 18-66 (139)
252 3o48_A Mitochondria fission 1 78.8 3.8 0.00013 25.4 4.4 52 56-107 56-107 (134)
253 3ffl_A Anaphase-promoting comp 78.7 7.2 0.00025 25.1 5.8 65 6-70 16-90 (167)
254 3lvg_A Clathrin heavy chain 1; 78.5 0.16 5.4E-06 39.1 -2.3 84 77-170 53-136 (624)
255 2d2s_A Exocyst complex compone 78.4 13 0.00046 25.3 7.5 88 14-104 25-117 (235)
256 1zbp_A Hypothetical protein VP 78.2 6.6 0.00023 27.5 5.9 122 14-144 4-129 (273)
257 2o03_A Probable zinc uptake re 78.2 2.2 7.6E-05 26.1 3.3 48 121-168 16-63 (131)
258 4b4t_R RPN7, 26S proteasome re 77.5 20 0.00068 26.7 11.7 99 42-144 130-237 (429)
259 3eiq_C Programmed cell death p 76.3 14 0.00049 27.0 7.5 73 80-155 219-293 (358)
260 2uwj_G Type III export protein 75.5 10 0.00035 22.4 9.3 88 57-155 20-107 (115)
261 2p1h_A APAF-1, apoptotic prote 74.4 9.6 0.00033 21.6 5.8 64 62-135 24-87 (94)
262 2p58_C Putative type III secre 74.4 11 0.00037 22.3 9.2 88 57-155 21-108 (116)
263 4aez_C MAD3, mitotic spindle c 73.9 18 0.00061 24.5 7.6 50 60-109 131-181 (223)
264 1mzb_A Ferric uptake regulatio 73.5 3.2 0.00011 25.5 3.1 34 131-164 34-67 (136)
265 2fu4_A Ferric uptake regulatio 72.8 4.8 0.00017 22.1 3.5 61 104-167 8-69 (83)
266 3dss_A Geranylgeranyl transfer 72.6 24 0.00082 25.4 14.0 135 14-156 36-185 (331)
267 2zu6_B Programmed cell death p 72.6 18 0.00062 25.8 7.2 68 80-150 168-237 (307)
268 3txn_A 26S proteasome regulato 72.3 27 0.00093 25.9 11.3 134 8-143 20-167 (394)
269 2uwj_G Type III export protein 72.0 6.4 0.00022 23.2 3.8 80 21-109 20-99 (115)
270 4gns_B Protein CSD3, chitin bi 71.6 18 0.0006 29.4 7.5 55 50-105 344-398 (754)
271 2fe3_A Peroxide operon regulat 71.5 3.4 0.00012 25.8 2.9 41 68-109 12-52 (145)
272 4a1g_A Mitotic checkpoint seri 71.3 17 0.00057 23.0 8.7 71 76-150 66-136 (152)
273 4b4t_P 26S proteasome regulato 70.4 27 0.00092 26.2 8.0 145 13-162 143-305 (445)
274 2nsz_A Programmed cell death p 69.4 17 0.00056 22.2 6.8 69 13-83 13-83 (129)
275 4a1g_A Mitotic checkpoint seri 69.2 19 0.00065 22.8 7.9 53 60-114 82-135 (152)
276 4ets_A Ferric uptake regulatio 68.9 5.1 0.00018 25.6 3.4 38 69-107 24-61 (162)
277 2ijq_A Hypothetical protein; s 68.0 21 0.00071 22.8 6.8 60 46-106 36-103 (161)
278 2fu4_A Ferric uptake regulatio 67.9 13 0.00043 20.3 7.0 61 31-93 6-67 (83)
279 2wvi_A Mitotic checkpoint seri 67.8 21 0.00073 22.9 8.4 71 39-114 59-130 (164)
280 3twr_A Tankyrase-2; ankyrin re 67.4 18 0.00062 22.2 5.8 121 8-138 6-128 (165)
281 2xig_A Ferric uptake regulatio 67.2 3.4 0.00012 26.0 2.2 40 69-109 18-57 (150)
282 4fhn_B Nucleoporin NUP120; pro 67.1 59 0.002 27.7 11.4 117 48-169 817-957 (1139)
283 2ion_A PDCD4, programmed cell 66.7 21 0.00073 22.5 6.8 70 13-84 15-86 (152)
284 2w57_A Ferric uptake regulatio 66.6 4.1 0.00014 25.6 2.5 36 131-166 33-68 (150)
285 2fe3_A Peroxide operon regulat 65.3 22 0.00074 22.0 7.1 63 30-94 10-72 (145)
286 1mzb_A Ferric uptake regulatio 63.9 22 0.00076 21.7 6.7 62 31-94 7-69 (136)
287 1oai_A Nuclear RNA export fact 62.7 7.7 0.00026 20.2 2.7 14 93-106 35-48 (59)
288 3l6a_A Eukaryotic translation 62.2 12 0.00041 27.4 4.6 23 47-69 16-38 (364)
289 3c1d_A Protein ORAA, regulator 61.6 27 0.00094 22.0 9.3 49 59-109 46-94 (159)
290 2xig_A Ferric uptake regulatio 61.5 27 0.00091 21.8 6.9 64 29-94 14-77 (150)
291 3qye_A TBC1 domain family memb 61.4 33 0.0011 24.4 6.8 46 29-75 210-255 (331)
292 1ug3_A EIF4GI, eukaryotic prot 60.9 23 0.00078 25.5 5.9 67 13-81 17-84 (339)
293 1q2z_A ATP-dependent DNA helic 60.8 4.7 0.00016 24.4 1.9 35 55-89 39-74 (120)
294 2qfz_A TBC1 domain family memb 60.2 32 0.0011 24.7 6.6 78 65-144 231-315 (345)
295 3o48_A Mitochondria fission 1 60.0 28 0.00095 21.5 5.3 23 120-142 83-105 (134)
296 4aez_C MAD3, mitotic spindle c 59.7 13 0.00045 25.2 4.1 73 75-151 114-186 (223)
297 2w57_A Ferric uptake regulatio 59.6 29 0.00099 21.6 7.4 64 30-95 5-69 (150)
298 1ug3_A EIF4GI, eukaryotic prot 59.5 30 0.001 24.9 6.3 25 46-70 14-38 (339)
299 3eyy_A Putative iron uptake re 59.2 29 0.00099 21.5 5.9 62 30-94 7-68 (145)
300 2b7e_A PRE-mRNA processing pro 58.8 9.8 0.00034 19.9 2.6 30 131-160 2-31 (59)
301 1wdy_A 2-5A-dependent ribonucl 57.9 22 0.00075 23.8 5.3 20 129-148 193-212 (285)
302 3eyy_A Putative iron uptake re 57.1 3.8 0.00013 25.6 1.1 39 69-109 10-48 (145)
303 2qq8_A TBC1 domain family memb 56.8 26 0.00088 25.1 5.6 44 29-73 215-258 (334)
304 3l6a_A Eukaryotic translation 55.7 24 0.00082 25.8 5.2 76 13-90 18-95 (364)
305 2keb_A DNA polymerase subunit 55.3 29 0.00098 20.2 5.6 59 25-84 27-88 (101)
306 2wvi_A Mitotic checkpoint seri 54.5 40 0.0014 21.6 7.9 74 75-152 60-133 (164)
307 3aji_A 26S proteasome non-ATPa 54.5 37 0.0013 22.0 5.8 20 14-33 10-29 (231)
308 3jxi_A Vanilloid receptor-rela 53.0 28 0.00095 23.2 5.1 89 13-103 8-115 (260)
309 1wdy_A 2-5A-dependent ribonucl 52.6 49 0.0017 22.0 6.6 118 12-139 7-126 (285)
310 1y8m_A FIS1; mitochondria, unk 52.5 40 0.0014 21.1 7.5 52 56-107 55-106 (144)
311 4fke_A Aminopeptidase N; zinc 52.5 1E+02 0.0034 25.6 15.0 140 13-161 692-842 (909)
312 3ibx_A TENA, HP1287, putative 52.1 32 0.0011 22.9 5.1 88 73-163 108-207 (221)
313 2rg8_A Programmed cell death p 51.8 30 0.001 22.1 4.7 25 46-70 13-37 (165)
314 4ets_A Ferric uptake regulatio 51.3 44 0.0015 21.1 7.0 70 23-94 13-85 (162)
315 2yru_A Steroid receptor RNA ac 51.2 27 0.00092 21.0 4.1 42 29-71 48-89 (118)
316 3mwm_A ZUR, putative metal upt 51.1 20 0.00067 22.1 3.7 60 35-95 6-65 (139)
317 3hzj_A Rabgap1L, RAB GTPase-ac 50.7 57 0.0019 22.9 6.5 39 35-73 181-219 (310)
318 1rw2_A ATP-dependent DNA helic 50.5 6.9 0.00023 24.8 1.5 34 56-89 71-105 (152)
319 3bu8_A Telomeric repeat-bindin 50.3 46 0.0016 22.5 5.4 21 51-71 122-142 (235)
320 1wgl_A TOLL-interacting protei 49.1 13 0.00043 19.4 2.1 18 92-109 37-54 (59)
321 2rg8_A Programmed cell death p 48.7 49 0.0017 21.1 5.3 73 13-88 16-89 (165)
322 2o03_A Probable zinc uptake re 47.3 45 0.0015 20.1 5.0 46 49-94 16-61 (131)
323 3hra_A Ankyrin repeat family p 46.3 32 0.0011 21.7 4.4 18 14-31 9-26 (201)
324 2dzn_A Probable 26S proteasome 46.1 44 0.0015 21.5 5.1 20 14-33 6-25 (228)
325 1wty_A Hypothetical protein TT 46.1 12 0.00042 22.3 2.1 90 22-122 3-93 (119)
326 3t8k_A Uncharacterized protein 45.9 56 0.0019 20.8 6.2 27 51-77 43-69 (186)
327 2p58_C Putative type III secre 45.5 45 0.0016 19.7 6.3 80 21-109 21-100 (116)
328 3hra_A Ankyrin repeat family p 45.1 41 0.0014 21.2 4.8 127 12-150 41-173 (201)
329 3e3v_A Regulatory protein RECX 45.0 60 0.002 20.9 5.7 50 25-76 51-100 (177)
330 4ady_A RPN2, 26S proteasome re 44.2 1.4E+02 0.0049 25.1 9.5 119 18-142 535-656 (963)
331 3b7b_A Euchromatic histone-lys 43.9 50 0.0017 21.5 5.1 82 12-103 13-99 (237)
332 4g8k_A 2-5A-dependent ribonucl 43.0 68 0.0023 22.3 6.0 83 63-152 219-303 (337)
333 3f3f_C Nucleoporin NUP85; stru 42.9 74 0.0025 24.9 6.3 25 118-142 519-543 (570)
334 4fn6_A Thiaminase-2, thiaminas 42.8 73 0.0025 21.3 6.7 86 73-162 105-203 (229)
335 3eiq_C Programmed cell death p 42.1 99 0.0034 22.6 6.8 63 13-77 223-287 (358)
336 3bge_A Predicted ATPase; struc 41.8 75 0.0026 21.1 7.2 64 10-74 7-78 (201)
337 3v30_A DNA-binding protein rfx 41.1 44 0.0015 20.5 4.3 83 15-103 7-91 (172)
338 1k1a_A B-cell lymphoma 3-encod 40.8 55 0.0019 21.2 5.0 89 49-141 12-102 (241)
339 4b4t_P 26S proteasome regulato 40.5 1.1E+02 0.0039 22.8 9.9 128 13-142 62-204 (445)
340 3qil_A Clathrin heavy chain 1; 40.4 47 0.0016 20.2 3.9 48 117-167 34-81 (125)
341 3d5l_A Regulatory protein RECX 39.9 82 0.0028 21.0 5.7 50 59-109 92-141 (221)
342 3kea_A K1L; tropism, ANK repea 39.9 26 0.00088 24.1 3.2 15 126-140 169-183 (285)
343 2zu6_B Programmed cell death p 39.6 1E+02 0.0034 21.9 6.3 68 13-82 172-241 (307)
344 1qsa_A Protein (soluble lytic 39.3 1.4E+02 0.0048 23.6 12.8 117 22-143 229-347 (618)
345 3f6q_A Integrin-linked protein 39.0 68 0.0023 19.8 6.5 115 14-138 9-125 (179)
346 2d2s_A Exocyst complex compone 37.8 94 0.0032 21.1 6.8 89 49-142 24-118 (235)
347 3ffl_A Anaphase-promoting comp 37.7 80 0.0027 20.3 7.8 105 37-141 12-148 (167)
348 3txn_A 26S proteasome regulato 36.6 1.3E+02 0.0044 22.3 10.8 91 48-141 104-207 (394)
349 1fkm_A Protein (GYP1P), ORF YO 36.3 52 0.0018 24.3 4.5 37 36-72 224-260 (396)
350 1zl8_A LIN-7; heterodimer, alp 36.1 22 0.00074 17.8 1.6 22 129-150 7-28 (53)
351 2r9g_A AAA ATPase, central reg 36.0 96 0.0033 20.7 9.0 84 55-140 26-116 (204)
352 3utm_A Tankyrase-1; tankyrase, 36.0 75 0.0025 22.0 5.2 123 13-149 27-151 (351)
353 3t5v_B Nuclear mRNA export pro 35.0 81 0.0028 23.9 5.4 62 79-142 177-247 (455)
354 3cqc_A Nuclear pore complex pr 33.5 42 0.0014 23.4 3.4 28 80-107 36-63 (270)
355 2yru_A Steroid receptor RNA ac 33.0 81 0.0028 18.9 6.8 63 45-107 21-90 (118)
356 2ijq_A Hypothetical protein; s 32.4 98 0.0034 19.7 6.6 56 14-71 40-103 (161)
357 1uzc_A Hypothetical protein FL 32.4 62 0.0021 17.4 3.4 34 94-130 14-48 (71)
358 3pvs_A Replication-associated 32.1 1.6E+02 0.0054 22.1 9.3 41 126-166 266-306 (447)
359 2pnn_A Transient receptor pote 32.0 65 0.0022 21.6 4.3 91 11-103 14-123 (273)
360 3no6_A Transcriptional activat 32.0 64 0.0022 22.0 4.2 84 75-162 126-222 (248)
361 2r9g_A AAA ATPase, central reg 31.8 1.1E+02 0.0039 20.3 8.9 72 9-82 13-92 (204)
362 2etb_A Transient receptor pote 31.8 39 0.0013 22.4 3.1 89 13-103 5-112 (256)
363 4gt9_A TS, tsase, thymidylate 31.8 58 0.002 22.1 3.9 56 112-167 173-228 (232)
364 3qil_A Clathrin heavy chain 1; 31.6 89 0.003 19.0 4.8 52 46-100 35-86 (125)
365 3bge_A Predicted ATPase; struc 31.1 1.2E+02 0.004 20.2 7.3 56 54-109 18-78 (201)
366 2cos_A Serine/threonine protei 30.3 46 0.0016 16.9 2.3 37 64-105 11-49 (54)
367 3mv2_A Coatomer subunit alpha; 30.0 1.6E+02 0.0053 21.3 11.9 69 93-163 185-256 (325)
368 1dp3_A TRAM protein; helix-loo 29.8 36 0.0012 17.4 1.9 40 16-56 5-44 (55)
369 3rjo_A Endoplasmic reticulum a 29.7 1.7E+02 0.0057 21.6 15.0 138 13-162 203-352 (419)
370 3r88_A Anthranilate phosphorib 29.6 1.1E+02 0.0037 22.5 5.2 65 44-109 24-90 (377)
371 3f3f_C Nucleoporin NUP85; stru 29.4 1.6E+02 0.0054 23.2 6.2 74 57-134 495-568 (570)
372 3eu9_A Huntingtin-interacting 28.7 79 0.0027 20.3 4.2 11 90-100 118-128 (240)
373 2cwy_A Hypothetical protein TT 28.7 85 0.0029 17.8 4.2 45 57-103 15-64 (94)
374 1jog_A Hypothetical protein HI 28.2 84 0.0029 19.5 3.9 98 41-144 38-142 (146)
375 2rfa_A Transient receptor pote 28.2 1.2E+02 0.0042 19.5 7.4 128 11-148 38-184 (232)
376 3dfg_A Xcrecx, regulatory prot 27.2 1.2E+02 0.0041 19.1 7.9 48 60-109 49-96 (162)
377 2qcx_A Transcriptional activat 27.1 1.3E+02 0.0044 20.7 5.0 80 75-161 133-226 (263)
378 3qye_A TBC1 domain family memb 26.5 74 0.0025 22.5 3.9 44 101-146 211-254 (331)
379 4b4t_S RPN3, 26S proteasome re 26.5 2.3E+02 0.0077 22.0 6.6 64 78-142 231-297 (523)
380 4hl4_A TBC1 domain family memb 26.1 1.6E+02 0.0056 20.4 5.5 31 43-73 202-233 (292)
381 3hzj_A Rabgap1L, RAB GTPase-ac 26.1 82 0.0028 22.1 4.0 45 100-146 176-220 (310)
382 2mys_C Myosin; muscle protein, 25.8 1.1E+02 0.0036 17.9 12.3 127 24-160 8-146 (149)
383 2dod_A Transcription elongatio 25.2 95 0.0032 17.2 4.3 33 23-56 16-48 (82)
384 1lsh_A Lipovitellin (LV-1N, LV 25.2 3.1E+02 0.011 23.2 12.6 56 14-75 316-371 (1056)
385 3k8p_D Protein transport prote 24.5 2.1E+02 0.0073 23.1 6.2 83 75-162 397-493 (709)
386 2qq8_A TBC1 domain family memb 24.4 64 0.0022 23.0 3.2 44 100-145 215-258 (334)
387 3ctd_A Putative ATPase, AAA fa 24.2 1.7E+02 0.0057 19.7 9.1 55 55-109 47-106 (213)
388 3tjy_A Effector protein hopab3 23.8 1.1E+02 0.0036 17.2 5.2 24 137-160 50-73 (94)
389 1wxp_A THO complex subunit 1; 23.6 1.2E+02 0.004 17.7 4.2 47 57-106 55-102 (110)
390 3kea_A K1L; tropism, ANK repea 23.6 97 0.0033 21.1 4.0 115 12-138 33-149 (285)
391 2fv2_A RCD1 required for cell 23.6 1.7E+02 0.0057 20.5 4.9 58 47-104 177-235 (268)
392 1y8m_A FIS1; mitochondria, unk 23.5 1.4E+02 0.0048 18.6 9.8 68 75-144 36-106 (144)
393 3aaa_C Myotrophin, protein V-1 23.5 1.1E+02 0.0037 17.3 4.7 18 85-102 44-61 (123)
394 2qx5_A Nucleoporin NIC96; mRNA 23.2 78 0.0027 25.3 3.6 48 7-56 152-199 (661)
395 4hbd_A KN motif and ankyrin re 23.0 1E+02 0.0034 20.9 3.9 123 11-138 112-236 (276)
396 2co5_A Viral protein F93; vira 22.0 64 0.0022 18.5 2.3 18 39-56 40-57 (99)
397 2p22_A Suppressor protein STP2 21.8 1.7E+02 0.0058 18.9 5.0 49 42-91 110-158 (174)
398 3zyq_A Hepatocyte growth facto 21.5 1.2E+02 0.0043 20.3 4.0 21 90-110 122-142 (226)
399 2wpv_A GET4, UPF0363 protein Y 21.3 2.3E+02 0.0078 20.2 11.9 25 114-138 133-157 (312)
400 2wpv_A GET4, UPF0363 protein Y 21.2 2.3E+02 0.0078 20.2 12.2 125 16-142 62-215 (312)
401 2nxp_A Transcription initiatio 21.1 1.3E+02 0.0045 18.8 3.8 69 56-128 67-137 (156)
402 3frw_A Putative Trp repressor 20.7 1.1E+02 0.0038 18.0 3.1 30 4-33 7-36 (107)
403 3hgl_A Effector protein hopab2 20.5 1.2E+02 0.0042 16.7 5.4 23 137-159 52-74 (85)
404 3cl3_A ORF K13, KS-vflip; deat 20.5 1.9E+02 0.0063 18.8 6.4 90 56-151 37-153 (183)
405 1rtw_A Transcriptional activat 20.5 1.9E+02 0.0066 19.0 5.1 90 64-161 83-192 (220)
406 3s6n_M SurviVal motor neuron p 20.4 78 0.0027 14.5 2.3 22 78-105 8-29 (37)
407 4gq2_M Nucleoporin NUP120; bet 20.3 3.8E+02 0.013 22.4 12.0 110 49-164 816-950 (950)
408 4f52_E Glomulin; cullin-ring E 20.3 3.2E+02 0.011 21.5 6.6 89 35-125 19-131 (596)
409 3qwl_A TBC1 domain family memb 20.1 2.3E+02 0.008 19.8 6.9 27 47-73 206-232 (294)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.6e-38 Score=240.78 Aligned_cols=160 Identities=17% Similarity=0.206 Sum_probs=151.6
Q ss_pred chhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccc---------hHHHHHHHHHHHhcCCCC
Q 038114 7 TQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRS---------LQLGRKVHDHILSSKSQP 76 (170)
Q Consensus 7 ~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~---------~~~a~~~~~~m~~~~~~~ 76 (170)
|...++ +|.+|++.|++++|+++|++| ...|++||..||++||.+|++.+. ++.|.++|++|.+.|+.|
T Consensus 25 pe~~l~~~id~c~k~G~~~~A~~lf~~M-~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P 103 (501)
T 4g26_A 25 PEALLKQKLDMCSKKGDVLEALRLYDEA-RRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP 103 (501)
T ss_dssp HHHHHHHHHHHTTTSCCHHHHHHHHHHH-HHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC
Confidence 334456 899999999999999999999 999999999999999999987654 688999999999999999
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 038114 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156 (170)
Q Consensus 77 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~l 156 (170)
|..|||+||++|++.|++++|.++|++|.+.|+ .||..|||++|.+|++.|++++|.++|++|.+.|+.||..||++|
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~--~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~L 181 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI--QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAAL 181 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccccC
Q 038114 157 LCACTSPSNVLYL 169 (170)
Q Consensus 157 l~~~~~~g~~e~~ 169 (170)
|++|++.|+++++
T Consensus 182 i~~~~~~g~~d~A 194 (501)
T 4g26_A 182 LKVSMDTKNADKV 194 (501)
T ss_dssp HHHHHHTTCHHHH
T ss_pred HHHHhhCCCHHHH
Confidence 9999999998865
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.1e-35 Score=227.01 Aligned_cols=157 Identities=12% Similarity=0.085 Sum_probs=150.9
Q ss_pred ccchhHhH-HHhhhcccCC---------HHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCC
Q 038114 5 LKTQLRFT-FYNSQPIQNL---------YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS 74 (170)
Q Consensus 5 ~~~~~~~~-li~~~~~~~~---------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 74 (170)
.|+..+|| ||.+|++.+. .+.|.++|++| ...|+.||..||++||.+|++.|++++|.++|++|.+.|+
T Consensus 58 ~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M-~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~ 136 (501)
T 4g26_A 58 QLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQM-IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI 136 (501)
T ss_dssp CCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC
T ss_pred CCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 47899999 8999987765 68899999999 9999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHH
Q 038114 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVR 154 (170)
Q Consensus 75 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~ 154 (170)
.||..+||+||.+|++.|++++|.++|++|.+.|+ .||..||++||.+|++.|++++|.++|++|++.|+.|+..||+
T Consensus 137 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~--~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~ 214 (501)
T 4g26_A 137 QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV--VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFD 214 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHH
T ss_pred CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 99999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCC
Q 038114 155 SLLCACTSPS 164 (170)
Q Consensus 155 ~ll~~~~~~g 164 (170)
.|+..|+..+
T Consensus 215 ~l~~~F~s~~ 224 (501)
T 4g26_A 215 MIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHSHH
T ss_pred HHHHHHhcCc
Confidence 9999998643
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.94 E-value=1.8e-27 Score=189.78 Aligned_cols=121 Identities=14% Similarity=0.180 Sum_probs=105.2
Q ss_pred chhhHHHHHHHhhcccchHHHHHHHHHHHh---cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhH
Q 038114 42 RPSTYACLISTCSSLRSLQLGRKVHDHILS---SKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASW 118 (170)
Q Consensus 42 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~ 118 (170)
-..||++||++|++.|++++|.++|.+|.+ .|+.||+.|||+||++||+.|++++|.++|++|.+.|+ .||++||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~--~PDvvTY 203 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL--TPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC--CCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCcHHHH
Confidence 344899999999999999999999988764 48899999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHhCCCC-hHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCC
Q 038114 119 NAIIAGVASPSN-ANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164 (170)
Q Consensus 119 ~~li~~~~~~g~-~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g 164 (170)
|++|.++|+.|+ .++|.++|++|.+.|+.||..||++++.++.+.+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 999999999887 4788999999999999999999997766655443
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.92 E-value=4.2e-26 Score=181.97 Aligned_cols=150 Identities=9% Similarity=0.042 Sum_probs=129.0
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHh--hCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQN--NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~--~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 84 (170)
..+|| ||++|++.|++++|.++|+.|.+ ..|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 56899 99999999999999999988822 4589999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC-HHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCC------HhhHHHHH
Q 038114 85 LNMYGKCGS-LEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD------GLTVRSLL 157 (170)
Q Consensus 85 i~~~~~~~~-~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~------~~t~~~ll 157 (170)
|.++|+.|+ .++|.++|++|.+.|+ .||..+|+.++.++.+. .+++..+++ .-+..|+ ..|...|.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~--~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGL--KLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTC--CSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCC--CCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 999999998 5789999999999999 99999999999766553 444555444 3456655 66677777
Q ss_pred HHhcCCC
Q 038114 158 CACTSPS 164 (170)
Q Consensus 158 ~~~~~~g 164 (170)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 7777655
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.68 E-value=6.5e-16 Score=119.42 Aligned_cols=153 Identities=12% Similarity=0.000 Sum_probs=79.5
Q ss_pred HhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038114 10 RFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY 88 (170)
Q Consensus 10 ~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 88 (170)
+|+ ++..|.+.|++++|+++|+++ ...+ +.+..+|..+..+|.+.|++++|.++|+++.+.. +.++.+|+.+...|
T Consensus 409 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 485 (597)
T 2xpi_A 409 AWIGFAHSFAIEGEHDQAISAYTTA-ARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVA 485 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH-HHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-HHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 444 455555555555555555555 3322 2244455555555555555555555555555432 22455555555555
Q ss_pred HcCCCHHHHHHHHhhcccC----CCCCCCC--hhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcC
Q 038114 89 GKCGSLEDARVVSDEMPQR----NVIESPD--LASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162 (170)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~----~~~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~ 162 (170)
.+.|++++|.++|+++.+. +. .|+ ..+|+.+..+|.+.|++++|..+|+++.+.+ ..+..+|..+..+|.+
T Consensus 486 ~~~g~~~~A~~~~~~~~~~~~~~~~--~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 486 FNKSDMQTAINHFQNALLLVKKTQS--NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLH 562 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCC--CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhhhcccc--chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 5555555555555555433 33 444 4455555555555555555555555555443 2245555555555555
Q ss_pred CCcccc
Q 038114 163 PSNVLY 168 (170)
Q Consensus 163 ~g~~e~ 168 (170)
.|++++
T Consensus 563 ~g~~~~ 568 (597)
T 2xpi_A 563 KKIPGL 568 (597)
T ss_dssp TTCHHH
T ss_pred hCCHHH
Confidence 555443
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.68 E-value=4.8e-16 Score=120.15 Aligned_cols=157 Identities=10% Similarity=-0.135 Sum_probs=130.9
Q ss_pred chhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038114 7 TQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85 (170)
Q Consensus 7 ~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 85 (170)
+...|+ +...|.+.|++++|.++|+++ .... +.+..+|+.++.++.+.|++++|.++|+++.+.+ +.+..+|+.+.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 448 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKS-STMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLG 448 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHH
Confidence 455666 788899999999999999988 5432 2356788999999999999999999999988764 44678899999
Q ss_pred HHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC----CCCCC--HhhHHHHHHH
Q 038114 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR----ELIPD--GLTVRSLLCA 159 (170)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~p~--~~t~~~ll~~ 159 (170)
.+|.+.|++++|.++|+++.+... .+..+|+.+...|.+.|++++|.++|+++.+. +..|+ ..+|..+..+
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 525 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYALFQ---YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH
Confidence 999999999999999998876543 46788999999999999999999999999876 77888 7899999999
Q ss_pred hcCCCccccC
Q 038114 160 CTSPSNVLYL 169 (170)
Q Consensus 160 ~~~~g~~e~~ 169 (170)
|.+.|+++++
T Consensus 526 ~~~~g~~~~A 535 (597)
T 2xpi_A 526 YRKLKMYDAA 535 (597)
T ss_dssp HHHTTCHHHH
T ss_pred HHHhcCHHHH
Confidence 9999988764
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.31 E-value=1.5e-10 Score=85.09 Aligned_cols=121 Identities=11% Similarity=-0.004 Sum_probs=70.3
Q ss_pred hhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHH
Q 038114 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122 (170)
Q Consensus 43 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li 122 (170)
..++..+..++.+.|++++|...|+++.+.. +.++.+|..+...+.+.|++++|.+.|+++.+.. +.+..+|+.+.
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~ 312 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC---PTHADSLNNLA 312 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cccHHHHHHHH
Confidence 3455555555666666666666666665542 2235556666666666666666666666655432 24455666666
Q ss_pred HHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCcccc
Q 038114 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 123 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~ 168 (170)
..+...|++++|..+++++.+.. ..+..++..+...+.+.|++++
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 357 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQE 357 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 66666666666666666665431 2234556666666666666554
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.30 E-value=9.4e-11 Score=87.51 Aligned_cols=156 Identities=8% Similarity=-0.036 Sum_probs=116.9
Q ss_pred chhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038114 7 TQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85 (170)
Q Consensus 7 ~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 85 (170)
+...|. +...+.+.|++++|+.+|+++ ... .+.+..++..+..++...|++++|...|.++.+.+ +.+...+..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~-l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAA-VDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 445555 788889999999999999988 543 23467788888889999999999999999988764 33578888999
Q ss_pred HHHHcCCCHHHHHHHHhhcccCCCCCCCCh---hhHHHHH------------HHHhCCCChHHHHHHHHHHHhCCCCCCH
Q 038114 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDL---ASWNAII------------AGVASPSNANEAMSLFSEMRDRELIPDG 150 (170)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~---~~~~~li------------~~~~~~g~~~~a~~l~~~m~~~~~~p~~ 150 (170)
..|.+.|++++|.+.|+++..... .+. ..+..+. ..+...|++++|..+|+++.+.. ..+.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNP---SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC---CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 999999999999999998876533 222 4444443 33777788888888888877543 2356
Q ss_pred hhHHHHHHHhcCCCccccC
Q 038114 151 LTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 151 ~t~~~ll~~~~~~g~~e~~ 169 (170)
..+..+..+|.+.|+++++
T Consensus 178 ~~~~~l~~~~~~~g~~~~A 196 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKA 196 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHH
Confidence 6677777777777777654
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.27 E-value=7.6e-10 Score=81.32 Aligned_cols=148 Identities=12% Similarity=0.042 Sum_probs=122.2
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 86 (170)
...+. +...+.+.|++++|...|+++ .... +.++.+|..+..++.+.|++++|...|+++.+.. +.+..+++.+..
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 313 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRA-IELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 44555 889999999999999999998 6543 2356689999999999999999999999998864 567899999999
Q ss_pred HHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHhcCC
Q 038114 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD-GLTVRSLLCACTSP 163 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~t~~~ll~~~~~~ 163 (170)
.+.+.|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|...|+++.+. .|+ ...|..+-..+...
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSC---TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHc
Confidence 9999999999999999998753 345788999999999999999999999999864 443 44555555554443
No 10
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=2.1e-10 Score=75.16 Aligned_cols=153 Identities=10% Similarity=0.059 Sum_probs=122.0
Q ss_pred hHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038114 9 LRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNM 87 (170)
Q Consensus 9 ~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 87 (170)
..|. +...+...|++++|...|+++ .... +.+...+..+...+...|++++|...++...+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQV-YDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTT-CCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH-HHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3344 678888899999999999888 4432 3456778888888899999999999999988763 4467888889999
Q ss_pred HHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccc
Q 038114 88 YGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e 167 (170)
+...|++++|.+.|++...... .+...+..+...+...|++++|...+++..+.. ..+...+..+...+...|+.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANP---INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc---HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHH
Confidence 9999999999999998876533 456788888889999999999999999887664 335677888888888888766
Q ss_pred c
Q 038114 168 Y 168 (170)
Q Consensus 168 ~ 168 (170)
+
T Consensus 162 ~ 162 (186)
T 3as5_A 162 E 162 (186)
T ss_dssp H
T ss_pred H
Confidence 4
No 11
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.24 E-value=1.3e-10 Score=82.95 Aligned_cols=86 Identities=9% Similarity=0.004 Sum_probs=39.4
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcc-hhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIR-PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 91 (170)
+...+...++.++|++.++++ ...+..|+ +..+..+-.++...|++++|.+.++. ..+...+..+...|.+.
T Consensus 71 la~~~~~~~~~~~A~~~l~~l-l~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~ 143 (291)
T 3mkr_A 71 FAEYLASHSRRDAIVAELDRE-MSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKL 143 (291)
T ss_dssp HHHHHHCSTTHHHHHHHHHHH-HHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcHHHHHHHHHHH-HhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHC
Confidence 344455555555555555555 44333332 22223333444444555555444443 23344444444445555
Q ss_pred CCHHHHHHHHhhcc
Q 038114 92 GSLEDARVVSDEMP 105 (170)
Q Consensus 92 ~~~~~a~~~~~~m~ 105 (170)
|++++|.+.|+.+.
T Consensus 144 g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 144 DRLDLARKELKKMQ 157 (291)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555554444
No 12
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.24 E-value=7.5e-10 Score=68.61 Aligned_cols=128 Identities=12% Similarity=0.079 Sum_probs=108.7
Q ss_pred hH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038114 11 FT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYG 89 (170)
Q Consensus 11 ~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 89 (170)
|. +...+...|++++|..+|+++ .... +.+...+..+...+...|++++|...+++..+.+ +.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKA-LELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHH-HHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 44 788889999999999999998 5543 2356678888888999999999999999998765 446788999999999
Q ss_pred cCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 038114 90 KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
+.|++++|.+.|+++..... .+...+..+...+...|++++|...++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP---RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999999876533 45678888999999999999999999988754
No 13
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.23 E-value=6e-10 Score=75.30 Aligned_cols=154 Identities=8% Similarity=-0.090 Sum_probs=99.6
Q ss_pred hHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038114 9 LRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNM 87 (170)
Q Consensus 9 ~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 87 (170)
..|. +...+...|++++|...|++. .... +.+...+..+...+...|++++|...++...+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDA-LKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH-HHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3344 567777777777777777776 4332 2345566777777777777777777777776653 3356677777777
Q ss_pred HHcC-CCHHHHHHHHhhcccCCCCCCC-ChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCc
Q 038114 88 YGKC-GSLEDARVVSDEMPQRNVIESP-DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165 (170)
Q Consensus 88 ~~~~-~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 165 (170)
|... |++++|.+.|+.+...+. .| +...+..+...+...|++++|...|++..+.. ..+...+..+...+.+.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPT--YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTT--CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHhcCcHHHHHHHHHHHHcCcC--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 7777 777777777777665222 23 24566666777777777777777777766543 1235556666666666665
Q ss_pred ccc
Q 038114 166 VLY 168 (170)
Q Consensus 166 ~e~ 168 (170)
.++
T Consensus 163 ~~~ 165 (225)
T 2vq2_A 163 LGD 165 (225)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 14
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.23 E-value=1.2e-12 Score=97.86 Aligned_cols=139 Identities=11% Similarity=0.100 Sum_probs=32.0
Q ss_pred cchhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038114 6 KTQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84 (170)
Q Consensus 6 ~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 84 (170)
++...|. +..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+...++. .+++.+.+.|
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~L 100 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETEL 100 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHH
Confidence 4445777 788888888888888888654 67778888888888888888888876666653 4456777777
Q ss_pred HHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHH--------------------------HHHhCCCChHHHHHHH
Q 038114 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII--------------------------AGVASPSNANEAMSLF 138 (170)
Q Consensus 85 i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li--------------------------~~~~~~g~~~~a~~l~ 138 (170)
+.+|.+.|+++++.++++. |+..+|+.+. .++.+.|+++.|.+.+
T Consensus 101 i~~Y~Klg~l~e~e~f~~~---------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~ 171 (449)
T 1b89_A 101 IFALAKTNRLAELEEFING---------PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGA 171 (449)
T ss_dssp --------CHHHHTTTTTC---------C----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHcC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHH
Confidence 7888888777777766642 3333444444 4445555555555555
Q ss_pred HHHHhCCCCCCHhhHHHHHHHhcCCCcccc
Q 038114 139 SEMRDRELIPDGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 139 ~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~ 168 (170)
.+. .+..||..++.+|...|+++.
T Consensus 172 ~KA------~~~~~Wk~v~~aCv~~~ef~l 195 (449)
T 1b89_A 172 RKA------NSTRTWKEVCFACVDGKEFRL 195 (449)
T ss_dssp HHH------TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHc------CCchhHHHHHHHHHHcCcHHH
Confidence 444 266777777777777776654
No 15
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.22 E-value=5e-10 Score=77.38 Aligned_cols=149 Identities=10% Similarity=-0.036 Sum_probs=85.4
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
+...+...|++++|...|+++ .... +.+...+..+...+...|++++|.+.+.+..+.. +.+...+..+...|.+.|
T Consensus 43 ~a~~~~~~~~~~~A~~~~~~a-l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 43 LGLGYLQRGNTEQAKVPLRKA-LEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQK 119 (252)
T ss_dssp HHHHHHHTTCTGGGHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCChHHHHHHHHHH-HhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHh
Confidence 455666666666666666665 3322 2244556666666666666666666666665543 224556666666666666
Q ss_pred CHHHHHHHHhhcccCCCCCCC-ChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccc
Q 038114 93 SLEDARVVSDEMPQRNVIESP-DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e 167 (170)
++++|.+.|++....+. .| +...+..+...+...|++++|...|++..+.. ..+...+..+...+...|+.+
T Consensus 120 ~~~~A~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDTL--YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp CHHHHHHHHHHHTTCTT--CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCcc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 66666666666655222 22 34455555566666666666666666655432 123445555555555555544
No 16
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.21 E-value=5.9e-10 Score=77.01 Aligned_cols=155 Identities=3% Similarity=-0.190 Sum_probs=121.4
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCC-CHHHHHHHH
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP-DVVLQNYIL 85 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li 85 (170)
...|. +...+...|++++|.+.|+++ .... +.+...+..+...+...|++++|...+.+..+.+..| +...+..+.
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a-~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la 148 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKA-LASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLG 148 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHH
Confidence 33444 688888999999999999988 5443 2356788888888999999999999999988743444 467888888
Q ss_pred HHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCc
Q 038114 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165 (170)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 165 (170)
..|.+.|++++|.+.|++...... .+...+..+...+...|++++|...+++..+.. ..+...+..+...+.+.|+
T Consensus 149 ~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 224 (252)
T 2ho1_A 149 LVSLQMKKPAQAKEYFEKSLRLNR---NQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFED 224 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccC
Confidence 999999999999999998776533 346778888899999999999999999887643 3456667777788877777
Q ss_pred ccc
Q 038114 166 VLY 168 (170)
Q Consensus 166 ~e~ 168 (170)
.++
T Consensus 225 ~~~ 227 (252)
T 2ho1_A 225 RDT 227 (252)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 17
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.20 E-value=2.9e-10 Score=84.84 Aligned_cols=156 Identities=8% Similarity=-0.075 Sum_probs=120.9
Q ss_pred chhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCH---HHHH
Q 038114 7 TQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV---VLQN 82 (170)
Q Consensus 7 ~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~ 82 (170)
+...|. +...+.+.|++++|...|+++ ...+ +.+...+..+..++.+.|++++|...|+.+.+.. +.+. ..+.
T Consensus 59 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 135 (450)
T 2y4t_A 59 NYIAYYRRATVFLAMGKSKAALPDLTKV-IQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQS 135 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHH
Confidence 345555 788899999999999999998 5543 2356788888999999999999999999998753 2234 5666
Q ss_pred HHHHH------------HHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCH
Q 038114 83 YILNM------------YGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDG 150 (170)
Q Consensus 83 ~li~~------------~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~ 150 (170)
.+... +.+.|++++|...|+.+..... .+...+..+...|...|++++|..+|+++.+.. ..+.
T Consensus 136 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 211 (450)
T 2y4t_A 136 QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV---WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNT 211 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 65444 8888999999999998876433 466788888899999999999999999887653 3457
Q ss_pred hhHHHHHHHhcCCCccccC
Q 038114 151 LTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 151 ~t~~~ll~~~~~~g~~e~~ 169 (170)
.++..+...|...|+.+++
T Consensus 212 ~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHH
Confidence 7888888888888877653
No 18
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.19 E-value=1.1e-09 Score=74.00 Aligned_cols=156 Identities=8% Similarity=-0.067 Sum_probs=123.5
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcc-cchHHHHHHHHHHHhcCCCCC-HHHHHHH
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSL-RSLQLGRKVHDHILSSKSQPD-VVLQNYI 84 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~-~~~~~~l 84 (170)
...|. +...+...|++++|...|++. .... +.+..++..+...+... |++++|...++...+.+..|+ ...+..+
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 119 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQA-LSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNK 119 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHH-HHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHH
Confidence 34455 788899999999999999998 5433 23667888899999999 999999999999988433443 6788999
Q ss_pred HHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCC
Q 038114 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164 (170)
Q Consensus 85 i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g 164 (170)
...+.+.|++++|.+.|++..+... .+...+..+...+...|++++|...+++..+..-..+...+..+...+...|
T Consensus 120 ~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (225)
T 2vq2_A 120 GICSAKQGQFGLAEAYLKRSLAAQP---QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALG 196 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC---CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999998876533 3467888899999999999999999999877543245666777777767666
Q ss_pred cccc
Q 038114 165 NVLY 168 (170)
Q Consensus 165 ~~e~ 168 (170)
+.+.
T Consensus 197 ~~~~ 200 (225)
T 2vq2_A 197 NAQA 200 (225)
T ss_dssp CHHH
T ss_pred cHHH
Confidence 6543
No 19
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.18 E-value=1.2e-09 Score=74.80 Aligned_cols=155 Identities=12% Similarity=0.020 Sum_probs=118.6
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 86 (170)
...+. +...+...|++++|...|++. .... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 133 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKA-LELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGT 133 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34444 677888889999999988887 4432 2356677888888888899999999998887764 345778888888
Q ss_pred HHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCcc
Q 038114 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 166 (170)
.+.+.|++++|.+.+++...... .+...+..+...+...|++++|...|++..+.. ..+..++..+...+.+.|+.
T Consensus 134 ~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 209 (243)
T 2q7f_A 134 VLVKLEQPKLALPYLQRAVELNE---NDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENR 209 (243)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCT
T ss_pred HHHHhccHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCH
Confidence 88899999999999888765433 356678888888888899999999988877653 23566788888888888877
Q ss_pred ccC
Q 038114 167 LYL 169 (170)
Q Consensus 167 e~~ 169 (170)
+++
T Consensus 210 ~~A 212 (243)
T 2q7f_A 210 EKA 212 (243)
T ss_dssp THH
T ss_pred HHH
Confidence 653
No 20
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.16 E-value=6.8e-10 Score=75.79 Aligned_cols=149 Identities=14% Similarity=-0.013 Sum_probs=86.5
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcc-----------cchHHHHHHHHHHHhcCCCCCHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSL-----------RSLQLGRKVHDHILSSKSQPDVVLQ 81 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~ 81 (170)
+-..+.+.|++++|...|++. .... +-+...+..+-.++... |++++|...|+...+.. +-+...+
T Consensus 45 lg~~~~~~g~~~~A~~~~~~a-l~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~ 121 (217)
T 2pl2_A 45 LARTQLKLGLVNPALENGKTL-VART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLH 121 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHH
Confidence 556666666666666666665 3322 12344555566666666 66677766666666542 2245666
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhc
Q 038114 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161 (170)
Q Consensus 82 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~ 161 (170)
..+-..|...|++++|...|++..+.. .+...+..+-..+...|++++|...|++..+.. +-+...+..+...+.
T Consensus 122 ~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~ 196 (217)
T 2pl2_A 122 LQRGLVYALLGERDKAEASLKQALALE----DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALL 196 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcc----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 666666777777777777776655432 234556666667777777777777777666542 224455666677777
Q ss_pred CCCccccC
Q 038114 162 SPSNVLYL 169 (170)
Q Consensus 162 ~~g~~e~~ 169 (170)
+.|+.+++
T Consensus 197 ~~g~~~~A 204 (217)
T 2pl2_A 197 LKGKAEEA 204 (217)
T ss_dssp C-------
T ss_pred HccCHHHH
Confidence 77776654
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.14 E-value=1.7e-11 Score=91.66 Aligned_cols=127 Identities=8% Similarity=0.011 Sum_probs=73.7
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..+..++.+.|
T Consensus 100 Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg 162 (449)
T 1b89_A 100 LIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLG 162 (449)
T ss_dssp ---------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTT
T ss_pred HHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhc
Confidence 5555555555555444442 245556666666666666666666666655 36777888888888
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccccC
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~~ 169 (170)
++++|.+.++++. ++.+|..++.+|+..|+|+.|......+ .+.|+. ...++..|.+.|.++++
T Consensus 163 ~yq~AVea~~KA~--------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L---~~~ad~--l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 163 EYQAAVDGARKAN--------STRTWKEVCFACVDGKEFRLAQMCGLHI---VVHADE--LEELINYYQDRGYFEEL 226 (449)
T ss_dssp CHHHHHHHHHHHT--------CHHHHHHHHHHHHHTTCHHHHHHTTTTT---TTCHHH--HHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHcC--------CchhHHHHHHHHHHcCcHHHHHHHHHHH---HhCHhh--HHHHHHHHHHCCCHHHH
Confidence 8888888888762 4489999999999999999997665542 244544 55788999999988764
No 22
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.14 E-value=2.9e-09 Score=70.27 Aligned_cols=154 Identities=7% Similarity=-0.101 Sum_probs=120.9
Q ss_pred hHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038114 9 LRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNM 87 (170)
Q Consensus 9 ~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 87 (170)
..|. +-..|.+.|++++|+..|++. .+.. +-+...+..+-.++.+.|++++|...+....... +-+...+..+-..
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~a-l~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKV-LKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 3454 888999999999999999998 5433 2356678888889999999999999999988764 3357778888888
Q ss_pred HHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccc
Q 038114 88 YGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e 167 (170)
+...++++.|...+.+...... -+...+..+-..+.+.|++++|+..|++..+.. .-+...|..+-.++.+.|+.+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNT---VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc---cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 8889999999999888765433 355678888888899999999999998887653 235667888888888888776
Q ss_pred cC
Q 038114 168 YL 169 (170)
Q Consensus 168 ~~ 169 (170)
++
T Consensus 159 ~A 160 (184)
T 3vtx_A 159 EA 160 (184)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.10 E-value=2.6e-09 Score=76.22 Aligned_cols=142 Identities=18% Similarity=0.112 Sum_probs=110.4
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV---LQNYILNMYG 89 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~ 89 (170)
+-..+.+.|++++|+..+++ +.+...+..+...+.+.|++++|.+.|+.+.+.. |+.. ....++..+.
T Consensus 107 la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~ 177 (291)
T 3mkr_A 107 AASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAA 177 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHh
Confidence 56888899999999998876 4677788888899999999999999999998764 4422 1223445555
Q ss_pred cCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccc
Q 038114 90 KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e 167 (170)
..|++++|..+|+++.+.. +.+...|+.+...+.+.|++++|+..|++..... .-+..++..+...+...|+.+
T Consensus 178 ~~~~~~eA~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~ 251 (291)
T 3mkr_A 178 GGEKLQDAYYIFQEMADKC---SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPP 251 (291)
T ss_dssp CTTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCH
T ss_pred CchHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCH
Confidence 6688999999999988763 4678889999999999999999999999877653 225667777887777777764
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.10 E-value=5.5e-10 Score=81.38 Aligned_cols=151 Identities=13% Similarity=0.054 Sum_probs=100.2
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHH----------------------
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHIL---------------------- 70 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~---------------------- 70 (170)
+...+.+.|++++|+..|++. .... +.+..++..+..++...|++++|...|++..
T Consensus 105 lg~~~~~~g~~~~A~~~~~~a-l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 182 (365)
T 4eqf_A 105 LGITQAENENEQAAIVALQRC-LELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRR 182 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------
T ss_pred HHHHHHHCCCHHHHHHHHHHH-HhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHH
Confidence 555555566666666666555 3321 1234455555555555555555555555544
Q ss_pred ----------------------hcCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhC
Q 038114 71 ----------------------SSKSQ-PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS 127 (170)
Q Consensus 71 ----------------------~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~ 127 (170)
+.... +++.++..+...|.+.|++++|.+.|++..+... .+..+|+.+...|..
T Consensus 183 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~ 259 (365)
T 4eqf_A 183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP---EDYSLWNRLGATLAN 259 (365)
T ss_dssp ------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHH
Confidence 33211 1577888888888888999999999888776533 456788888888999
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccccC
Q 038114 128 PSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 128 ~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~~ 169 (170)
.|++++|...|++..+.. ..+..++..+-.+|.+.|+++++
T Consensus 260 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 260 GDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred cCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 999999999998887653 22467788888888888877653
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.09 E-value=4.5e-10 Score=81.83 Aligned_cols=151 Identities=13% Similarity=-0.042 Sum_probs=119.9
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCC-CCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTN-FRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 91 (170)
+...+.+.|++++|...|+++ .... -.++..++..+...+...|++++|...|++..+.. +.+..+|+.+..+|.+.
T Consensus 183 l~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 260 (365)
T 4eqf_A 183 MSKSPVDSSVLEGVKELYLEA-AHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANG 260 (365)
T ss_dssp ------CCHHHHHHHHHHHHH-HHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhhHHHHHHHHHHH-HHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 577889999999999999999 5443 22368899999999999999999999999998864 44688999999999999
Q ss_pred CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCC---C--------CCHhhHHHHHHHh
Q 038114 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL---I--------PDGLTVRSLLCAC 160 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~---~--------p~~~t~~~ll~~~ 160 (170)
|++++|.+.|++..+... .+..+|..+...|...|++++|...|++..+..- . .+...|..+-.++
T Consensus 261 g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (365)
T 4eqf_A 261 DRSEEAVEAYTRALEIQP---GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIAL 337 (365)
T ss_dssp TCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC---CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHH
Confidence 999999999999876533 3478899999999999999999999998875421 1 1367788888888
Q ss_pred cCCCcccc
Q 038114 161 TSPSNVLY 168 (170)
Q Consensus 161 ~~~g~~e~ 168 (170)
...|+.+.
T Consensus 338 ~~~g~~~~ 345 (365)
T 4eqf_A 338 SLMDQPEL 345 (365)
T ss_dssp HHHTCHHH
T ss_pred HHcCcHHH
Confidence 77776654
No 26
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.09 E-value=1e-09 Score=75.62 Aligned_cols=151 Identities=13% Similarity=0.038 Sum_probs=81.7
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCC--CCcc----hhhHHHHHHHhhcccchHHHHHHHHHHHhcC-------------
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTN--FRIR----PSTYACLISTCSSLRSLQLGRKVHDHILSSK------------- 73 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------------- 73 (170)
+...+...|++++|...|++. .... ..|+ ..++..+-.++...|++++|...|....+..
T Consensus 44 ~~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 122 (258)
T 3uq3_A 44 RAAAEYEKGEYETAISTLNDA-VEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAE 122 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHH-HHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHH
Confidence 455556666666666666555 3211 1111 3455555556666666666666666655521
Q ss_pred -----------CCC-CHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHH
Q 038114 74 -----------SQP-DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141 (170)
Q Consensus 74 -----------~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 141 (170)
..| +...+..+...+.+.|++++|.+.|++...... .+...|..+...+...|++++|...|++.
T Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 123 KELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP---EDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 111 244555555566666666666666665554322 24455666666666666666666666666
Q ss_pred HhCCCCCCHhhHHHHHHHhcCCCcccc
Q 038114 142 RDRELIPDGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 142 ~~~~~~p~~~t~~~ll~~~~~~g~~e~ 168 (170)
.+.. ..+...+..+-..+.+.|+.++
T Consensus 200 l~~~-~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 200 IEKD-PNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhC-HHHHHHHHHHHHHHHHHhhHHH
Confidence 5442 2234555566666666665543
No 27
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.09 E-value=9.2e-09 Score=70.10 Aligned_cols=154 Identities=14% Similarity=-0.038 Sum_probs=129.8
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 86 (170)
...+. +-..+.+.|++++|...|++. .... +-+...+..+-.++.+.|++++|...++...+.. +.+...+..+-.
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERA-LKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHH-HTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 33444 788899999999999999998 5433 2466788888899999999999999999998864 345789999999
Q ss_pred HHHcC-----------CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 038114 87 MYGKC-----------GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRS 155 (170)
Q Consensus 87 ~~~~~-----------~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ 155 (170)
.+.+. |++++|...|++..+... -+...|..+-..+...|++++|+..|++..+.. .+...+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNP---RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 99999 999999999998876533 346788888899999999999999999998887 78888999
Q ss_pred HHHHhcCCCccccC
Q 038114 156 LLCACTSPSNVLYL 169 (170)
Q Consensus 156 ll~~~~~~g~~e~~ 169 (170)
+-.++...|+.+++
T Consensus 157 la~~~~~~g~~~~A 170 (217)
T 2pl2_A 157 LAELYLSMGRLDEA 170 (217)
T ss_dssp HHHHHHHHTCHHHH
T ss_pred HHHHHHHcCCHHHH
Confidence 99999888887653
No 28
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.08 E-value=1.1e-09 Score=75.00 Aligned_cols=153 Identities=10% Similarity=-0.016 Sum_probs=114.1
Q ss_pred HhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038114 10 RFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY 88 (170)
Q Consensus 10 ~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 88 (170)
.|. +...+.+.|++++|...|+++ .... +.+...+..+...+...|++++|...+.+..+.. +.+...+..+...|
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~-l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKA-IEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp -----------------CCTTHHHH-HTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHH-HHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 344 677889999999999999998 5532 3467788889999999999999999999998764 34688999999999
Q ss_pred HcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCcccc
Q 038114 89 GKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~ 168 (170)
.+.|++++|.+.|++..+... .+...+..+...+...|++++|...+++..+.. ..+...+..+...+.+.|++++
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGM---ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTC---CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHhccHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999876543 456788889999999999999999999987653 2356778888888888887765
Q ss_pred C
Q 038114 169 L 169 (170)
Q Consensus 169 ~ 169 (170)
+
T Consensus 178 A 178 (243)
T 2q7f_A 178 A 178 (243)
T ss_dssp H
T ss_pred H
Confidence 3
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.07 E-value=1.4e-09 Score=77.49 Aligned_cols=148 Identities=9% Similarity=-0.095 Sum_probs=123.9
Q ss_pred hhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHH
Q 038114 16 SQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95 (170)
Q Consensus 16 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 95 (170)
.+...|++++|...++++ .... +.+...+..+...+...|++++|...+.+..+.. +.+...+..+...|.+.|+++
T Consensus 147 ~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAA-LEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp CTTSHHHHHHHHHHHHHH-HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHH-HhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHH
Confidence 388889999999999998 5443 2367789999999999999999999999998764 446889999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCC-----------CHhhHHHHHHHhcCCC
Q 038114 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP-----------DGLTVRSLLCACTSPS 164 (170)
Q Consensus 96 ~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p-----------~~~t~~~ll~~~~~~g 164 (170)
+|.+.|++..+... .+...|..+...+...|++++|...|++.....-.. +...+..+..++.+.|
T Consensus 224 ~A~~~~~~a~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 224 EALDAYNRALDINP---GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp HHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC---CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 99999999876533 456789999999999999999999999887653221 4778889999999988
Q ss_pred ccccC
Q 038114 165 NVLYL 169 (170)
Q Consensus 165 ~~e~~ 169 (170)
+.+++
T Consensus 301 ~~~~A 305 (327)
T 3cv0_A 301 RPDLV 305 (327)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 87653
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.07 E-value=1.6e-09 Score=74.63 Aligned_cols=151 Identities=12% Similarity=-0.015 Sum_probs=85.6
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCC--CCC----HHHHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS--QPD----VVLQNYILN 86 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~~li~ 86 (170)
+-..+...|++++|...|++. .... .+...+..+-.++...|++++|...+....+... .++ ..+|..+..
T Consensus 11 ~g~~~~~~~~~~~A~~~~~~a-~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 87 (258)
T 3uq3_A 11 EGNKFYKARQFDEAIEHYNKA-WELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGN 87 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHH-HHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHH
Confidence 555666666666666666666 4443 5555666666666666666666666666654311 111 456666666
Q ss_pred HHHcCCCHHHHHHHHhhcccCC------------------------CCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 87 MYGKCGSLEDARVVSDEMPQRN------------------------VIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~~------------------------~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
.|.+.|++++|...|++..... .. +.+...|..+...+...|++++|...|++..
T Consensus 88 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 166 (258)
T 3uq3_A 88 AYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMI 166 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6666666666666666554411 10 1233455555666666666666666666665
Q ss_pred hCCCCCCHhhHHHHHHHhcCCCcccc
Q 038114 143 DRELIPDGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 143 ~~~~~p~~~t~~~ll~~~~~~g~~e~ 168 (170)
+.. ..+..++..+...+.+.|++++
T Consensus 167 ~~~-~~~~~~~~~l~~~~~~~~~~~~ 191 (258)
T 3uq3_A 167 KRA-PEDARGYSNRAAALAKLMSFPE 191 (258)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred hcC-cccHHHHHHHHHHHHHhCCHHH
Confidence 443 2244556666666666555543
No 31
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.06 E-value=1.6e-09 Score=78.69 Aligned_cols=151 Identities=15% Similarity=0.012 Sum_probs=124.1
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCC-CCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTN-FRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
+..+...|++++|...|+++ .... -.++..++..+...+.+.|++++|...|.+..+.. +.+...|..+...|.+.|
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a-~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAA-VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGN 265 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHH-HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHhhcccHHHHHHHHHHH-HHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcC
Confidence 33344889999999999998 5433 22257889999999999999999999999998763 445889999999999999
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCC---C-------CHhhHHHHHHHhcC
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELI---P-------DGLTVRSLLCACTS 162 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~---p-------~~~t~~~ll~~~~~ 162 (170)
++++|.+.|++...... .+...|..+...|.+.|++++|...|++.....-. | ...+|..+..++..
T Consensus 266 ~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (368)
T 1fch_A 266 QSEEAVAAYRRALELQP---GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM 342 (368)
T ss_dssp CHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH
Confidence 99999999999876432 45678999999999999999999999988764211 1 26789999999999
Q ss_pred CCccccC
Q 038114 163 PSNVLYL 169 (170)
Q Consensus 163 ~g~~e~~ 169 (170)
.|+.+++
T Consensus 343 ~g~~~~A 349 (368)
T 1fch_A 343 LGQSDAY 349 (368)
T ss_dssp HTCGGGH
T ss_pred hCChHhH
Confidence 9988764
No 32
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.06 E-value=5.9e-09 Score=74.34 Aligned_cols=154 Identities=7% Similarity=-0.104 Sum_probs=109.7
Q ss_pred hHhH-HHhhhcccC-CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038114 9 LRFT-FYNSQPIQN-LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86 (170)
Q Consensus 9 ~~~~-li~~~~~~~-~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 86 (170)
..|. +...+...| ++++|...|++. .... +.+...+..+...+...|++++|...|....+.. +.+...+..+..
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a-~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 167 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKA-TTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGL 167 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHH-HTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH-HHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHH
Confidence 3444 667777777 788888888877 4433 2345567777778888888888888888877654 223556666778
Q ss_pred HHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCC--------CCCCHhhHHHHHH
Q 038114 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE--------LIPDGLTVRSLLC 158 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~--------~~p~~~t~~~ll~ 158 (170)
.|...|++++|.+.|++...... .+...+..+...+...|++++|...+++..+.. ...+..++..+..
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIAP---EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 88888888888888887766533 456778888888888888888888888776531 1333567778888
Q ss_pred HhcCCCcccc
Q 038114 159 ACTSPSNVLY 168 (170)
Q Consensus 159 ~~~~~g~~e~ 168 (170)
.+.+.|++++
T Consensus 245 ~~~~~g~~~~ 254 (330)
T 3hym_B 245 VCRKLKKYAE 254 (330)
T ss_dssp HHHHTTCHHH
T ss_pred HHHHhcCHHH
Confidence 8877777664
No 33
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.05 E-value=2.3e-09 Score=77.87 Aligned_cols=150 Identities=13% Similarity=0.052 Sum_probs=105.2
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCC------------------
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS------------------ 74 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------------------ 74 (170)
+...+.+.|++++|...|+++ .... +.+..++..+..++...|++++|...+....+...
T Consensus 104 l~~~~~~~g~~~~A~~~~~~a-l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (368)
T 1fch_A 104 LGTTQAENEQELLAISALRRC-LELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL 181 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----------
T ss_pred HHHHHHHCcCHHHHHHHHHHH-HhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcc
Confidence 566666667777777777666 4332 23455666666666666666666666665544211
Q ss_pred -----------------------------CC---CHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHH
Q 038114 75 -----------------------------QP---DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122 (170)
Q Consensus 75 -----------------------------~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li 122 (170)
.| +..++..+...|.+.|++++|...|++...... .+...|..+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~l~ 258 (368)
T 1fch_A 182 GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP---NDYLLWNKLG 258 (368)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHH
T ss_pred cHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---CCHHHHHHHH
Confidence 12 477888888999999999999999988776432 4567888888
Q ss_pred HHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCcccc
Q 038114 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 123 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~ 168 (170)
..+...|++++|...|++..+.. ..+...+..+...|.+.|++++
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 303 (368)
T 1fch_A 259 ATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHRE 303 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999887653 2356678888888888777664
No 34
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.04 E-value=1.9e-08 Score=65.63 Aligned_cols=132 Identities=8% Similarity=-0.072 Sum_probs=111.1
Q ss_pred chhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038114 7 TQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85 (170)
Q Consensus 7 ~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 85 (170)
+...+. +...+...|++++|...+++. .... +.+...+..+...+...|++++|...+....+.. +.+...+..+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 117 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERS-LADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLG 117 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHH
Confidence 344455 788899999999999999998 5442 3466788888899999999999999999998764 44688999999
Q ss_pred HHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 038114 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
..+.+.|++++|.+.|++...... .+...+..+...+...|++++|...+++..+.
T Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 118 VALDNLGRFDEAIDSFKIALGLRP---NEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHhcCc---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999876533 45678999999999999999999999988754
No 35
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.02 E-value=6e-09 Score=74.33 Aligned_cols=156 Identities=9% Similarity=-0.077 Sum_probs=95.8
Q ss_pred hHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038114 9 LRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNM 87 (170)
Q Consensus 9 ~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 87 (170)
..|. +...+...|++++|...|++. ..... .+...+..+-..+...|++++|...+.+..+.. +.+...+..+...
T Consensus 126 ~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 202 (330)
T 3hym_B 126 PAWIAYGHSFAVESEHDQAMAAYFTA-AQLMK-GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVV 202 (330)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH-HHHTT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH-HHhcc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3444 667777777777777777776 43321 234455556666777777777777777776653 3346677777777
Q ss_pred HHcCCCHHHHHHHHhhcccCC----C--CCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhc
Q 038114 88 YGKCGSLEDARVVSDEMPQRN----V--IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161 (170)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~~----~--~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~ 161 (170)
|.+.|++++|...|++..... - ....+..+|..+...+...|++++|...+++..+.. ..+...+..+-..+.
T Consensus 203 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 281 (330)
T 3hym_B 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHS 281 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHH
Confidence 777777777777776654321 0 001224566677777777777777777777666543 124455556666666
Q ss_pred CCCcccc
Q 038114 162 SPSNVLY 168 (170)
Q Consensus 162 ~~g~~e~ 168 (170)
+.|+.++
T Consensus 282 ~~g~~~~ 288 (330)
T 3hym_B 282 LMGNFEN 288 (330)
T ss_dssp HHTCHHH
T ss_pred HhccHHH
Confidence 5555443
No 36
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=1.2e-08 Score=62.99 Aligned_cols=120 Identities=10% Similarity=0.021 Sum_probs=100.4
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHH
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~ 124 (170)
.+..+...+...|++++|..++.++.+.. +.+...+..+...+...|++++|.+.|+++...+. .+...+..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---RSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC---CchHHHHHHHHH
Confidence 46677788889999999999999998764 34678899999999999999999999999876543 456788889999
Q ss_pred HhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccccC
Q 038114 125 VASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 125 ~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~~ 169 (170)
+...|++++|..+++++.+.. ..+..++..+...+.+.|+.+++
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 122 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEA 122 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHH
Confidence 999999999999999988764 33567788889999998887653
No 37
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.98 E-value=1.6e-08 Score=80.50 Aligned_cols=155 Identities=11% Similarity=-0.069 Sum_probs=129.6
Q ss_pred chhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038114 7 TQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85 (170)
Q Consensus 7 ~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 85 (170)
+...|+ |-..+.+.|++++|+..|++. .+.. +-+...+..+-.++.+.|++++|...|++..+.. +-+...|..+-
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kA-l~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKA-LEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 345566 899999999999999999998 5432 1246688899999999999999999999998864 33588999999
Q ss_pred HHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHhcCCC
Q 038114 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP-DGLTVRSLLCACTSPS 164 (170)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p-~~~t~~~ll~~~~~~g 164 (170)
.+|.+.|++++|.+.|++..+.+. -+...|+.+-..|...|++++|+..|++..+. .| +...+..+..++...|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P---~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINP---AFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcc
Confidence 999999999999999998876533 35678999999999999999999999988765 34 4667888999999999
Q ss_pred ccccC
Q 038114 165 NVLYL 169 (170)
Q Consensus 165 ~~e~~ 169 (170)
+++++
T Consensus 160 ~~~~A 164 (723)
T 4gyw_A 160 DWTDY 164 (723)
T ss_dssp CCTTH
T ss_pred cHHHH
Confidence 88765
No 38
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.97 E-value=7.1e-09 Score=78.34 Aligned_cols=152 Identities=9% Similarity=-0.064 Sum_probs=125.3
Q ss_pred hHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038114 9 LRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNM 87 (170)
Q Consensus 9 ~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 87 (170)
..|. +...+...|++++|...|+++ .... |+...+..+..++...|++++|...+....+.. +.+...+..+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~-l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKA-IELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHH-HHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH-HhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHH
Confidence 3444 688899999999999999998 5544 337788999999999999999999999998764 3457789999999
Q ss_pred HHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccc
Q 038114 88 YGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e 167 (170)
|.+.|++++|...|++...... .+...+..+...+...|++++|..++++..+.. ..+..++..+...+.+.|+++
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELDP---ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCS---SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCh---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999876544 355788899999999999999999999987653 224567888888888888776
Q ss_pred c
Q 038114 168 Y 168 (170)
Q Consensus 168 ~ 168 (170)
+
T Consensus 390 ~ 390 (514)
T 2gw1_A 390 K 390 (514)
T ss_dssp H
T ss_pred H
Confidence 5
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.97 E-value=6.4e-09 Score=72.44 Aligned_cols=121 Identities=11% Similarity=-0.055 Sum_probs=58.1
Q ss_pred cccCCHHHHHHHHHHHHhhCCCC---cchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCH
Q 038114 18 PIQNLYNEALVAFDFLQNNTNFR---IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSL 94 (170)
Q Consensus 18 ~~~~~~~~a~~~~~~m~~~~~~~---p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 94 (170)
...|++++|+..|+++ ...... .+..++..+..++...|++++|...|.+..+.. +.+...|..+...|.+.|++
T Consensus 16 ~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQI-LASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHH-HTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHH-HhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 3445555555555555 332110 123344455555555555555555555554432 22344555555555555555
Q ss_pred HHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHh
Q 038114 95 EDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 95 ~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 143 (170)
++|.+.|++...... .+...|..+...+...|++++|...|++..+
T Consensus 94 ~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 94 DAAYEAFDSVLELDP---TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHHHHHCT---TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCc---cccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 555555555443321 2234455555555555555555555555543
No 40
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.95 E-value=1.4e-08 Score=72.31 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=84.1
Q ss_pred hhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChH
Q 038114 53 CSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNAN 132 (170)
Q Consensus 53 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~ 132 (170)
+...|++++|...+.+..+.. +.+...+..+...|.+.|++++|.+.|++..+... .+..+|..+...+...|+++
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP---DDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHH
Confidence 444455555555555555443 33578888899999999999999999998876533 45678889999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccccC
Q 038114 133 EAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 133 ~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~~ 169 (170)
+|...|++..+.. ..+..++..+...+.+.|+++++
T Consensus 224 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 224 EALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 9999999887653 23567788888888888877653
No 41
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.95 E-value=6.9e-09 Score=73.40 Aligned_cols=160 Identities=11% Similarity=0.043 Sum_probs=123.3
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhC-------CCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhc------C
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNT-------NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS------K 73 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~-------~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~ 73 (170)
...+. +...+...|++++|..+|+++ ... ........+..+-..+...|++++|...+.+..+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQA-LEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 34455 788999999999999999998 542 23345567888889999999999999999988764 2
Q ss_pred CCC-CHHHHHHHHHHHHcCCCHHHHHHHHhhcccC------CCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC--
Q 038114 74 SQP-DVVLQNYILNMYGKCGSLEDARVVSDEMPQR------NVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR-- 144 (170)
Q Consensus 74 ~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-- 144 (170)
-.| ....+..+...|...|++++|.+.|++..+. +.. ......+..+...+...|++++|..++++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH-PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 223 3678899999999999999999999987653 220 234566888889999999999999999998765
Q ss_pred ----CCCC-CHhhHHHHHHHhcCCCccccC
Q 038114 145 ----ELIP-DGLTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 145 ----~~~p-~~~t~~~ll~~~~~~g~~e~~ 169 (170)
+-.| ...++..+...+...|+++++
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 214 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQA 214 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 2233 344677788888888877653
No 42
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.95 E-value=1.5e-07 Score=63.20 Aligned_cols=144 Identities=10% Similarity=-0.080 Sum_probs=115.0
Q ss_pred hHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 038114 11 FTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90 (170)
Q Consensus 11 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 90 (170)
|++-..+...|++++|...|++. +.|+...+..+-.++...|++++|...|.+..+.. +.+...|..+-..|.+
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 44778888999999999999988 36688899999999999999999999999998764 4468899999999999
Q ss_pred CCCHHHHHHHHhhcccCCCC------------CCC-ChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 038114 91 CGSLEDARVVSDEMPQRNVI------------ESP-DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLL 157 (170)
Q Consensus 91 ~~~~~~a~~~~~~m~~~~~~------------~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll 157 (170)
.|++++|.+.|+...+.... ..| +...+..+...+...|++++|...|++..+..-......+...+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 163 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAM 163 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHHH
Confidence 99999999999988764320 011 23678888899999999999999999988665333434444444
Q ss_pred HHh
Q 038114 158 CAC 160 (170)
Q Consensus 158 ~~~ 160 (170)
..+
T Consensus 164 ~~~ 166 (213)
T 1hh8_A 164 ECV 166 (213)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 43
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.92 E-value=3.8e-09 Score=73.59 Aligned_cols=135 Identities=13% Similarity=0.016 Sum_probs=106.5
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhC------CC-CcchhhHHHHHHHhhcccchHHHHHHHHHHHhc------C
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNT------NF-RIRPSTYACLISTCSSLRSLQLGRKVHDHILSS------K 73 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~------~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~ 73 (170)
...+. +-..|...|++++|...|++. ... +- +....++..+-..+...|++++|...+.+..+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDA-LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHH-HHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 34455 788899999999999999987 432 22 234558889999999999999999999988764 1
Q ss_pred C-CCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccC------CCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 038114 74 S-QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQR------NVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 74 ~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
- +.....+..+-..|...|++++|.+.|++.... +- ......++..+...+...|++++|..++++..+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD-DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 233678899999999999999999999987654 11 0223567888899999999999999999988753
No 44
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.90 E-value=3.7e-08 Score=74.95 Aligned_cols=148 Identities=12% Similarity=-0.045 Sum_probs=122.9
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
+-..+...|++++|...|++. ... .|+...+..+-..+...|++++|...+....+.. +.+..+|..+...|...|
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~-~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQES-INL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcccHHHHHHHHHHH-Hhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcC
Confidence 567788899999999999998 554 3557788889999999999999999999998764 346888999999999999
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCcccc
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~ 168 (170)
++++|...|++...... .+...|..+...+...|++++|...+++..+.. ..+...+..+...+...|++++
T Consensus 325 ~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 396 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLNP---ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDT 396 (537)
T ss_dssp CHHHHHHHHHHHHHHCT---TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHH
Confidence 99999999998876543 345788889999999999999999999988764 3345678888888888887765
No 45
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.89 E-value=2.9e-08 Score=75.03 Aligned_cols=156 Identities=10% Similarity=-0.029 Sum_probs=110.1
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 86 (170)
...|. +...+...|++++|...|++. ..... .+...+..+...+...|++++|...+....+.. +.+...+..+..
T Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 380 (514)
T 2gw1_A 304 SSVYYHRGQMNFILQNYDQAGKDFDKA-KELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAE 380 (514)
T ss_dssp THHHHHHHHHHHHTTCTTHHHHHHHHH-HHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH-HHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHH
Confidence 33444 677788888888888888887 54332 245677777888888888888888888887653 334667788888
Q ss_pred HHHcCCCHHHHHHHHhhcccCCCCCCCC----hhhHHHHHHHHhC---CCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038114 87 MYGKCGSLEDARVVSDEMPQRNVIESPD----LASWNAIIAGVAS---PSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~ 159 (170)
.|.+.|++++|.+.|+.+...... .++ ...|..+...+.. .|++++|...|++..... ..+..++..+...
T Consensus 381 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 458 (514)
T 2gw1_A 381 ILTDKNDFDKALKQYDLAIELENK-LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHT-SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 888888888888888876543220 122 3377788888888 888888888888877653 2345667777777
Q ss_pred hcCCCcccc
Q 038114 160 CTSPSNVLY 168 (170)
Q Consensus 160 ~~~~g~~e~ 168 (170)
+.+.|+.++
T Consensus 459 ~~~~g~~~~ 467 (514)
T 2gw1_A 459 KLQQEDIDE 467 (514)
T ss_dssp HHHTTCHHH
T ss_pred HHHhcCHHH
Confidence 777777654
No 46
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.89 E-value=8.4e-08 Score=65.38 Aligned_cols=147 Identities=8% Similarity=-0.106 Sum_probs=116.9
Q ss_pred hHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 038114 11 FTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90 (170)
Q Consensus 11 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 90 (170)
++.-..+...|++++|...|++. ......++...+..+-.++...|++++|...|....+.. +-+...|..+-..|.+
T Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 11 KNEGNDALNAKNYAVAFEKYSEY-LKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-HHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHH-HhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHH
Confidence 33788899999999999999998 665544677777778888999999999999999998764 3357889999999999
Q ss_pred CCCHHHHHHHHhhcccCCCCCCCCh-------hhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCC---HhhHHHHHHHh
Q 038114 91 CGSLEDARVVSDEMPQRNVIESPDL-------ASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD---GLTVRSLLCAC 160 (170)
Q Consensus 91 ~~~~~~a~~~~~~m~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~---~~t~~~ll~~~ 160 (170)
.|++++|.+.|++..+... .+. ..|..+-..+...|++++|...|++..+. .|+ ...+..+-.+|
T Consensus 89 ~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 89 MKNNQEYIATLTEGIKAVP---GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLF 163 (228)
T ss_dssp TTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCC---CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHH
Confidence 9999999999998876533 223 45777778889999999999999988754 565 34555555555
Q ss_pred cCCC
Q 038114 161 TSPS 164 (170)
Q Consensus 161 ~~~g 164 (170)
...|
T Consensus 164 ~~~~ 167 (228)
T 4i17_A 164 YNNG 167 (228)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 47
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.88 E-value=6e-08 Score=69.72 Aligned_cols=150 Identities=7% Similarity=-0.119 Sum_probs=79.7
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCC--CCHHHHHHH------
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQ--PDVVLQNYI------ 84 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l------ 84 (170)
+...+...|++++|...|+++ .... +-+...+..+-.++...|++++|...|....+.... .+...+..+
T Consensus 43 ~a~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 120 (359)
T 3ieg_A 43 RATVFLAMGKSKAALPDLTKV-IALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM 120 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH-HHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHH
Confidence 455555556666666666555 3221 123345555555555556666666666655543210 123333333
Q ss_pred ------HHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038114 85 ------LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158 (170)
Q Consensus 85 ------i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~ 158 (170)
...+...|++++|.+.|++..+... .+...+..+...+...|++++|...+++..+.. ..+..++..+..
T Consensus 121 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 196 (359)
T 3ieg_A 121 QRLRSQALDAFDGADYTAAITFLDKILEVCV---WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKIST 196 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3455555666666666665554322 344556666666666666666666666665542 234455666666
Q ss_pred HhcCCCcccc
Q 038114 159 ACTSPSNVLY 168 (170)
Q Consensus 159 ~~~~~g~~e~ 168 (170)
.+...|++++
T Consensus 197 ~~~~~~~~~~ 206 (359)
T 3ieg_A 197 LYYQLGDHEL 206 (359)
T ss_dssp HHHHHTCHHH
T ss_pred HHHHcCCHHH
Confidence 6665555443
No 48
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.88 E-value=4.9e-08 Score=70.18 Aligned_cols=150 Identities=9% Similarity=-0.023 Sum_probs=95.3
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
+...+.+.|++++|...|+++ .... +.+...+..+-.++...|++++|...++...+.. +.+...+..+...|.+.|
T Consensus 9 ~~~~~~~~g~~~~A~~~~~~~-l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 9 LGKKLLAAGQLADALSQFHAA-VDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcC
Confidence 566677777777777777776 4322 2345566677777777777777777777776653 224567777777777777
Q ss_pred CHHHHHHHHhhcccCCCCCC--CChhhHHHH------------HHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038114 93 SLEDARVVSDEMPQRNVIES--PDLASWNAI------------IAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~--p~~~~~~~l------------i~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~ 158 (170)
++++|...|++...... . .+...+..+ ...+...|++++|..++++..+.. ..+...+..+..
T Consensus 86 ~~~~A~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 162 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKSNP--SEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAE 162 (359)
T ss_dssp CHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCC--cccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 77777777776654311 0 133333333 466777777777777777776543 234556666666
Q ss_pred HhcCCCcccc
Q 038114 159 ACTSPSNVLY 168 (170)
Q Consensus 159 ~~~~~g~~e~ 168 (170)
.+...|++++
T Consensus 163 ~~~~~~~~~~ 172 (359)
T 3ieg_A 163 CFIKEGEPRK 172 (359)
T ss_dssp HHHHTTCHHH
T ss_pred HHHHCCCHHH
Confidence 6666666553
No 49
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.88 E-value=1.4e-07 Score=67.54 Aligned_cols=154 Identities=12% Similarity=0.049 Sum_probs=116.0
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcc-hh-hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIR-PS-TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 84 (170)
...|. +...+.+.|++++|..+|++. .. ..|+ .. .|..+...+.+.|++++|..+|+...+.. +.+...|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~a-l~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~ 174 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRL-LA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTA 174 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH-Hh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 33566 788888999999999999998 55 3454 33 78888888899999999999999998764 2344555444
Q ss_pred HHHHH-cCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCC-CCCC--HhhHHHHHHHh
Q 038114 85 LNMYG-KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE-LIPD--GLTVRSLLCAC 160 (170)
Q Consensus 85 i~~~~-~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~-~~p~--~~t~~~ll~~~ 160 (170)
..... ..|++++|.++|+...+... -+...|..++..+.+.|+.++|..+|++..... +.|+ ...|..++...
T Consensus 175 a~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~ 251 (308)
T 2ond_A 175 ALMEYYCSKDKSVAFKIFELGLKKYG---DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 33322 36999999999998776432 356788888999999999999999999998874 5653 45677777777
Q ss_pred cCCCcccc
Q 038114 161 TSPSNVLY 168 (170)
Q Consensus 161 ~~~g~~e~ 168 (170)
.+.|+.+.
T Consensus 252 ~~~g~~~~ 259 (308)
T 2ond_A 252 SNIGDLAS 259 (308)
T ss_dssp HHHSCHHH
T ss_pred HHcCCHHH
Confidence 76776554
No 50
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.87 E-value=1e-08 Score=72.55 Aligned_cols=133 Identities=12% Similarity=0.033 Sum_probs=105.2
Q ss_pred hHhH-HHhhhcccCCHHHHHHHHHHHHhhC------C-CCcchhhHHHHHHHhhcccchHHHHHHHHHHHhc------CC
Q 038114 9 LRFT-FYNSQPIQNLYNEALVAFDFLQNNT------N-FRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS------KS 74 (170)
Q Consensus 9 ~~~~-li~~~~~~~~~~~a~~~~~~m~~~~------~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~ 74 (170)
..+. +...|...|++++|...+++. ... + ......++..+-..+...|++++|...+.+..+. +-
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 70 TMLNILALVYRDQNKYKDAANLLNDA-LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444 788899999999999999988 432 2 2334567888999999999999999999998764 22
Q ss_pred CC-CHHHHHHHHHHHHcCCCHHHHHHHHhhcccC------CCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHh
Q 038114 75 QP-DVVLQNYILNMYGKCGSLEDARVVSDEMPQR------NVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 75 ~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 143 (170)
.| ....+..+...|...|++++|.+.|++.... +.. .....++..+...+...|++++|...+++..+
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD-PNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23 3567889999999999999999999987653 210 22345788888999999999999999998875
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.85 E-value=5.4e-08 Score=67.71 Aligned_cols=130 Identities=9% Similarity=-0.105 Sum_probs=100.5
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 86 (170)
...|. +...+...|++++|...|++. .... +.+...+..+-..+...|++++|...|....+.. +.+...+..+..
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~a-l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~ 119 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQA-LAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGI 119 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHH-HHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHH
Confidence 34455 788899999999999999998 5443 2367788999999999999999999999998864 335788999999
Q ss_pred HHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 038114 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
.|.+.|++++|.+.|+++... .|+...+...+..+...|++++|...+.+....
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 120 ALYYGGRDKLAQDDLLAFYQD----DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999999999999999988764 333334444444455567888888888665543
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.85 E-value=3.5e-07 Score=63.54 Aligned_cols=149 Identities=8% Similarity=-0.085 Sum_probs=104.6
Q ss_pred HhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcc--hhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038114 10 RFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIR--PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86 (170)
Q Consensus 10 ~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 86 (170)
.|. +...+.+.|++++|+..|++. ...+-.|+ ...|..+-..+...|++++|...|....+.. +.+...|..+-.
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 116 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETY-FSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGS 116 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHH-HTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH-HhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHH
Confidence 444 677888889999999988888 55332121 2237778888888889999999888888754 335678888888
Q ss_pred HHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHH-HHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCc
Q 038114 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII-AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li-~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 165 (170)
.|.+.|++++|.+.|++..+... .+...|..+. ..+. .+++++|...|++..+.. ..+...+..+-..+...|+
T Consensus 117 ~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~ 191 (272)
T 3u4t_A 117 YFYNKGNFPLAIQYMEKQIRPTT---TDPKVFYELGQAYYY-NKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDP 191 (272)
T ss_dssp HHHHTTCHHHHHHHHGGGCCSSC---CCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHST
T ss_pred HHHHccCHHHHHHHHHHHhhcCC---CcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCc
Confidence 88899999999999988876633 4455666666 4444 458999999888887643 1224555555555555554
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.81 E-value=4.1e-07 Score=59.77 Aligned_cols=136 Identities=10% Similarity=0.014 Sum_probs=110.9
Q ss_pred chhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038114 7 TQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85 (170)
Q Consensus 7 ~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 85 (170)
+...|. +...+.+.|++++|...+... ..... -+...+..+-..+...++++.+...+.+..+.. +-+...+..+-
T Consensus 38 ~~~~~~~la~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg 114 (184)
T 3vtx_A 38 NVETLLKLGKTYMDIGLPNDAIESLKKF-VVLDT-TSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLG 114 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhcCc-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHH
Confidence 344555 788999999999999999998 54332 345567777778888999999999999988764 44688899999
Q ss_pred HHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCH
Q 038114 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDG 150 (170)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~ 150 (170)
..|.+.|++++|.+.|++..+... -+...|..+-..|.+.|++++|...|++..+. .|+.
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 115 LVYDSMGEHDKAIEAYEKTISIKP---GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK--EEKK 174 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--THHH
T ss_pred HHHHHhCCchhHHHHHHHHHHhcc---hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC--CccC
Confidence 999999999999999998876543 45678999999999999999999999987754 4544
No 54
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.80 E-value=4.1e-08 Score=74.59 Aligned_cols=150 Identities=10% Similarity=-0.121 Sum_probs=88.5
Q ss_pred HhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcc---------cchHHHHHHHHHHHhcCCCCCHH
Q 038114 10 RFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSL---------RSLQLGRKVHDHILSSKSQPDVV 79 (170)
Q Consensus 10 ~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~ 79 (170)
.|. +-..|.+.|++++|...|++. .... |+...+..+-.++... |++++|...|++..+.. +-+..
T Consensus 139 a~~~lg~~~~~~g~~~~A~~~~~~a-l~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 214 (474)
T 4abn_A 139 AWNQLGEVYWKKGDVTSAHTCFSGA-LTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGR 214 (474)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH-HTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-HhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHH
Confidence 344 566666677777777777666 4432 5556666666666666 77777777777766643 22466
Q ss_pred HHHHHHHHHHcC--------CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHh
Q 038114 80 LQNYILNMYGKC--------GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL 151 (170)
Q Consensus 80 ~~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~ 151 (170)
.|..+-.+|... |++++|.+.|+...+......-+...|..+-..|...|++++|...|++..+.. .-+..
T Consensus 215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~ 293 (474)
T 4abn_A 215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPE 293 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 666666666666 667777777776654311000255666677777777777777777777665432 11233
Q ss_pred hHHHHHHHhcCCC
Q 038114 152 TVRSLLCACTSPS 164 (170)
Q Consensus 152 t~~~ll~~~~~~g 164 (170)
.+..+-.++...|
T Consensus 294 a~~~l~~~~~~lg 306 (474)
T 4abn_A 294 PQQREQQLLEFLS 306 (474)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.78 E-value=1.4e-07 Score=65.53 Aligned_cols=140 Identities=17% Similarity=0.114 Sum_probs=111.4
Q ss_pred hHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCC--CHHHHHHHHHHH
Q 038114 11 FTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP--DVVLQNYILNMY 88 (170)
Q Consensus 11 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~ 88 (170)
+..-..+...|++++|+..|++. ..... -+...+..+..++...|++++|...+....+.+-.+ ....|..+-..|
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~-l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKL-EAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH-HHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHH-HHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 44677888999999999999998 55432 345588888889999999999999999998843222 244689999999
Q ss_pred HcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCC-CHhhHHHHH
Q 038114 89 GKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP-DGLTVRSLL 157 (170)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p-~~~t~~~ll 157 (170)
.+.|++++|.+.|+...+... .+...|..+...+...|++++|...|++..+. .| +...+..+-
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~ 149 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDT---TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELG 149 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHST---TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHH
Confidence 999999999999998876543 34578999999999999999999999987765 34 344444444
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.73 E-value=8.5e-07 Score=61.96 Aligned_cols=121 Identities=9% Similarity=-0.043 Sum_probs=58.7
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhc----ccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSS----LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY 88 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 88 (170)
+-..+...|++++|...|++. ... -+...+..+-..+.. .+++++|...|.+..+.+ ++..+..+-..|
T Consensus 12 lg~~~~~~~~~~~A~~~~~~a-~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 84 (273)
T 1ouv_A 12 LGAKSYKEKDFTQAKKYFEKA-CDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLY 84 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHH-HHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 444455555555555555555 331 122334444444444 555555555555555443 444555555555
Q ss_pred Hc----CCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhC----CCChHHHHHHHHHHHhCC
Q 038114 89 GK----CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS----PSNANEAMSLFSEMRDRE 145 (170)
Q Consensus 89 ~~----~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~ 145 (170)
.. .+++++|.+.|++..+.+ +...+..+-..|.. .+++++|...|++..+.+
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 144 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDLK-----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN 144 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred hCCCCcccCHHHHHHHHHHHHHcC-----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence 55 555555555555444332 22344444444444 455555555555554443
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.73 E-value=8.5e-08 Score=72.84 Aligned_cols=154 Identities=10% Similarity=-0.035 Sum_probs=126.8
Q ss_pred hHhH-HHhhhcccCCH-HHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038114 9 LRFT-FYNSQPIQNLY-NEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86 (170)
Q Consensus 9 ~~~~-li~~~~~~~~~-~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 86 (170)
..|. +-..+...|++ ++|+..|++. .+.. +-+...|..+-.++...|++++|...|+...+. .|+...+..+-.
T Consensus 103 ~~~~~lg~~~~~~g~~~~~A~~~~~~a-l~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 103 QALMLKGKALNVTPDYSPEAEVLLSKA-VKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHH-HhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 3444 68888999999 9999999998 5433 234678999999999999999999999999886 466789999999
Q ss_pred HHHcC---------CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCC--------CChHHHHHHHHHHHhCCCC--
Q 038114 87 MYGKC---------GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP--------SNANEAMSLFSEMRDRELI-- 147 (170)
Q Consensus 87 ~~~~~---------~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~a~~l~~~m~~~~~~-- 147 (170)
.|... |++++|.+.|++..+... -+...|..+-..|... |++++|...|++..+..-.
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV---LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 99999 999999999999876543 3567888888888888 8999999999998875311
Q ss_pred CCHhhHHHHHHHhcCCCccccC
Q 038114 148 PDGLTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 148 p~~~t~~~ll~~~~~~g~~e~~ 169 (170)
-+...|..+-.+|...|+++++
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A 277 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEA 277 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHH
Confidence 3777888898999888887754
No 58
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.71 E-value=4.1e-07 Score=55.30 Aligned_cols=97 Identities=10% Similarity=0.086 Sum_probs=56.1
Q ss_pred hhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHH
Q 038114 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIA 123 (170)
Q Consensus 44 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~ 123 (170)
..+..+...+...|++++|...+.+..+.. +.+...+..+...+.+.|++++|...|+++..... .+..++..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~ 85 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---NNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---ccHHHHHHHHH
Confidence 345555555566666666666666665542 22455566666666666666666666666554322 34455566666
Q ss_pred HHhCCCChHHHHHHHHHHHhC
Q 038114 124 GVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 124 ~~~~~g~~~~a~~l~~~m~~~ 144 (170)
.+...|++++|...|++....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 666666666666666665543
No 59
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.69 E-value=3e-06 Score=59.16 Aligned_cols=128 Identities=14% Similarity=0.012 Sum_probs=66.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhc----ccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----C
Q 038114 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSS----LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK----C 91 (170)
Q Consensus 20 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~ 91 (170)
.+++++|+..|++. ...+ +...+..+-..+.. .+++++|...|....+.+ +...+..+-..|.+ .
T Consensus 91 ~~~~~~A~~~~~~a-~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~ 163 (273)
T 1ouv_A 91 SQNTNKALQYYSKA-CDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTP 163 (273)
T ss_dssp CCCHHHHHHHHHHH-HHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred ccCHHHHHHHHHHH-HHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCC
Confidence 55555555555555 4333 34444444444544 555566665555555543 34445555555555 5
Q ss_pred CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhC----CCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcC
Q 038114 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS----PSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~ 162 (170)
+++++|...|+...+.+. ...+..+-..|.. .+++++|...|++..+.+ +...+..+-..|.+
T Consensus 164 ~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 164 KDLKKALASYDKACDLKD-----SPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYN 230 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHc
Confidence 556666666655544322 2344445555555 666666666666655543 13444445555544
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.68 E-value=1.3e-06 Score=62.44 Aligned_cols=143 Identities=7% Similarity=-0.047 Sum_probs=108.9
Q ss_pred ccCCH-------HHHHHHHHHHHhhCCCCc-chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCC-HH-HHHHHHHHH
Q 038114 19 IQNLY-------NEALVAFDFLQNNTNFRI-RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD-VV-LQNYILNMY 88 (170)
Q Consensus 19 ~~~~~-------~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~-~~~~li~~~ 88 (170)
+.|++ ++|..+|++. ... +.| +...|..+...+.+.|++++|..+|+...+. .|+ .. .|..+...+
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rA-l~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~ 144 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERA-IST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFA 144 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHH-HTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHH
T ss_pred hccchhhcccchHHHHHHHHHH-HHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHH
Confidence 35776 8999999998 542 234 4558889999999999999999999999984 343 33 899999999
Q ss_pred HcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHH-HhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccc
Q 038114 89 GKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG-VASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e 167 (170)
.+.|++++|..+|+...+... ++...|...... +...|+.++|..+|++..+.. .-+...|..+...+.+.|+.+
T Consensus 145 ~~~~~~~~A~~~~~~a~~~~p---~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~ 220 (308)
T 2ond_A 145 RRAEGIKSGRMIFKKAREDAR---TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDN 220 (308)
T ss_dssp HHHHCHHHHHHHHHHHHTSTT---CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHH
T ss_pred HHhcCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHH
Confidence 999999999999999887543 233444433333 224699999999999887652 225677888888888888876
Q ss_pred cC
Q 038114 168 YL 169 (170)
Q Consensus 168 ~~ 169 (170)
++
T Consensus 221 ~A 222 (308)
T 2ond_A 221 NT 222 (308)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 61
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.66 E-value=1.1e-07 Score=66.18 Aligned_cols=152 Identities=11% Similarity=0.036 Sum_probs=112.2
Q ss_pred hcccCCHHHHHHHHHHHHhh-------CCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhc------CCCC-CHHHHH
Q 038114 17 QPIQNLYNEALVAFDFLQNN-------TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS------KSQP-DVVLQN 82 (170)
Q Consensus 17 ~~~~~~~~~a~~~~~~m~~~-------~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~ 82 (170)
....|+++.|+..|++. .. ...+....++..+-..+...|++++|...+.+..+. +-.| ...++.
T Consensus 11 ~~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQA-LEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp --CCSCSSSHHHHHHHH-HHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 45567777777777766 33 122334567888999999999999999999998764 2233 367899
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcccCC-----CCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC------CCCC-CH
Q 038114 83 YILNMYGKCGSLEDARVVSDEMPQRN-----VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR------ELIP-DG 150 (170)
Q Consensus 83 ~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------~~~p-~~ 150 (170)
.+-..|...|++++|.+.|++..... ...+....+|..+...+...|++++|..++++..+. +-.| ..
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 99999999999999999999876431 100234567888899999999999999999988765 2133 35
Q ss_pred hhHHHHHHHhcCCCccccC
Q 038114 151 LTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 151 ~t~~~ll~~~~~~g~~e~~ 169 (170)
.++..+-..+...|+++++
T Consensus 170 ~~~~~la~~~~~~g~~~~A 188 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDA 188 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHH
Confidence 5677888888888877653
No 62
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.65 E-value=7.4e-07 Score=67.74 Aligned_cols=131 Identities=10% Similarity=-0.002 Sum_probs=110.5
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 86 (170)
...|. +...+...|++++|...|++. .... +.+..++..+-..+...|++++|...|+...+.. +.+...|..+..
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 352 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKA-VDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLAC 352 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHH-hccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455 788999999999999999998 5443 2456789999999999999999999999998864 334678999999
Q ss_pred HHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 038114 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
.|.+.|++++|.+.|++...... .+...+..+...+...|++++|...|++..+.
T Consensus 353 ~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 353 LLYKQGKFTESEAFFNETKLKFP---TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT---TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99999999999999999876533 44568899999999999999999999988654
No 63
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.64 E-value=3.5e-07 Score=58.65 Aligned_cols=142 Identities=6% Similarity=-0.055 Sum_probs=106.1
Q ss_pred hhhcccCCHHHHHHHHHHHHhhCCCCc-chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 038114 15 NSQPIQNLYNEALVAFDFLQNNTNFRI-RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS 93 (170)
Q Consensus 15 ~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 93 (170)
..+...|++++|+..+... .. ..| ++..+-.+-..|.+.|++++|.+.|++..+.. +-++..|..+-.+|.+.|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a-~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGS-TP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp --CCCHHHHHHHHHHHHHH-SC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcChHHHHHHHHHHh-cc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 4566778899999999887 32 223 33456677888999999999999999998864 3468899999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHH-HHHHHhCCCCC-CHhhHHHHHHHhcCCCc
Q 038114 94 LEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL-FSEMRDRELIP-DGLTVRSLLCACTSPSN 165 (170)
Q Consensus 94 ~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l-~~~m~~~~~~p-~~~t~~~ll~~~~~~g~ 165 (170)
+++|...|+...+.+. -+...|..+...|.+.|++++|... +++..+. .| +...|...-..+.+.|+
T Consensus 81 ~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNP---TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 9999999998876533 3467888888999999998876665 4655543 34 34456655555555553
No 64
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.63 E-value=1.1e-06 Score=53.76 Aligned_cols=118 Identities=8% Similarity=0.012 Sum_probs=67.0
Q ss_pred hhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHH
Q 038114 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122 (170)
Q Consensus 43 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li 122 (170)
...+..+-..+...|+++.|...|....+.. +.+...+..+...+...|++++|.+.++....... .+...+..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~ 87 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP---AYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc---cCHHHHHHHH
Confidence 3345555555666666666666666665542 22455666666666666666666666666554322 2345566666
Q ss_pred HHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCc
Q 038114 123 AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165 (170)
Q Consensus 123 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 165 (170)
..+...|++++|...|++..+.. ..+...+..+..++.+.|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 66666666666666666665442 1234445555555554444
No 65
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.62 E-value=1e-06 Score=53.48 Aligned_cols=97 Identities=12% Similarity=0.019 Sum_probs=82.1
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 86 (170)
...|. +...+.+.|++++|...|+++ .... +.+..++..+...+.+.|++++|...++.+.+.. +.+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKA-LELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 34455 788899999999999999998 5443 3456788889999999999999999999998764 446889999999
Q ss_pred HHHcCCCHHHHHHHHhhcccC
Q 038114 87 MYGKCGSLEDARVVSDEMPQR 107 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~ 107 (170)
.|.+.|++++|...|++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999988764
No 66
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.61 E-value=5e-07 Score=66.90 Aligned_cols=147 Identities=5% Similarity=-0.024 Sum_probs=111.5
Q ss_pred hHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccc-hHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038114 9 LRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRS-LQLGRKVHDHILSSKSQPDVVLQNYILN 86 (170)
Q Consensus 9 ~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~ 86 (170)
..|. +-..+.+.|++++|+..|++. .... +-+...|..+-.++...|+ +++|...|++..+.. +-+...|+.+-.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~a-l~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDA-IELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHH-HHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3455 677778889999999999888 5432 1245577777888888886 999999999888764 336788888888
Q ss_pred HHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcC
Q 038114 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~ 162 (170)
++.+.|++++|...|++..+.+. -+...|..+-..+...|++++|+..|++..+..-. +...|..+-.++.+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP---~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDA---KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCc---cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 88899999999999998876543 35677888888888888999999998888765422 45566666666665
No 67
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.59 E-value=2.2e-06 Score=65.67 Aligned_cols=154 Identities=12% Similarity=0.045 Sum_probs=113.4
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcc-h-hhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIR-P-STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 84 (170)
...|. +...+.+.|++++|..+|+++ ... .|+ . ..|......+.+.|+++.|.++|....+... .+...|-..
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~a-l~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~ 396 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRL-LAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTA 396 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH-hCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHH
Confidence 44455 688888899999999999998 653 454 2 4788888888899999999999999987632 222333222
Q ss_pred H-HHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCC-CCCC--HhhHHHHHHHh
Q 038114 85 L-NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE-LIPD--GLTVRSLLCAC 160 (170)
Q Consensus 85 i-~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~-~~p~--~~t~~~ll~~~ 160 (170)
. -.+...|++++|..+|+...+... -+...|..++..+.+.|+.++|..+|+.....+ ..|+ ...|...+...
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~p---~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e 473 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKYG---DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 473 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHCC---CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 2 223468999999999998765422 356789999999999999999999999998764 3443 34666666666
Q ss_pred cCCCcccc
Q 038114 161 TSPSNVLY 168 (170)
Q Consensus 161 ~~~g~~e~ 168 (170)
.+.|+.+.
T Consensus 474 ~~~G~~~~ 481 (530)
T 2ooe_A 474 SNIGDLAS 481 (530)
T ss_dssp HHSSCHHH
T ss_pred HHcCCHHH
Confidence 66676543
No 68
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.59 E-value=1e-06 Score=56.48 Aligned_cols=128 Identities=8% Similarity=-0.097 Sum_probs=100.4
Q ss_pred hHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038114 9 LRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNM 87 (170)
Q Consensus 9 ~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 87 (170)
..|. +-..+...|++++|...|++. .... +.+...+..+-.++...|++++|...+....+.. +.+...|..+-..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~a-l~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQA-IELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH-HHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3344 677888999999999999998 5432 2356788888889999999999999999998864 4468889999999
Q ss_pred HHcCCCHHHHHHHHhhcccCCCCCCCChhhHHH--HHHHHhCCCChHHHHHHHHHHH
Q 038114 88 YGKCGSLEDARVVSDEMPQRNVIESPDLASWNA--IIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~--li~~~~~~g~~~~a~~l~~~m~ 142 (170)
+.+.|++++|...|++...... .+...+.. ....+...|++++|...+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKP---HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999998876533 23334433 3344677899999999988764
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.56 E-value=1.7e-06 Score=69.03 Aligned_cols=130 Identities=7% Similarity=0.016 Sum_probs=109.2
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 86 (170)
...|. +-..|.+.|++++|+..|++. .+.. +-+...|..+-.++.+.|++++|.+.|++..+.. +-+...|+.+-.
T Consensus 43 ~~a~~nLg~~l~~~g~~~eA~~~~~~A-l~l~-P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~ 119 (723)
T 4gyw_A 43 AAAHSNLASVLQQQGKLQEALMHYKEA-IRIS-PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLAS 119 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44555 889999999999999999998 5432 1246689999999999999999999999998864 335889999999
Q ss_pred HHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHh
Q 038114 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 143 (170)
.|.+.|++++|.+.|++..+... -+...|..+...+...|++++|.+.+++..+
T Consensus 120 ~~~~~g~~~eAi~~~~~Al~l~P---~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 120 IHKDSGNIPEAIASYRTALKLKP---DFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC---CChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999998876533 3467899999999999999999998887753
No 70
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.55 E-value=1.8e-06 Score=53.10 Aligned_cols=97 Identities=13% Similarity=0.061 Sum_probs=54.3
Q ss_pred hhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHH
Q 038114 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122 (170)
Q Consensus 43 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li 122 (170)
...+..+-..+...|++++|...|.+..+.. +.+...+..+...|...|++++|.+.|++...... .+...+..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la 91 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP---TFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CchHHHHHHH
Confidence 3345555555556666666666666655442 22455556666666666666666666665554322 2344555555
Q ss_pred HHHhCCCChHHHHHHHHHHHh
Q 038114 123 AGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 123 ~~~~~~g~~~~a~~l~~~m~~ 143 (170)
..+...|++++|...|++..+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666665544
No 71
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.54 E-value=5.5e-07 Score=64.59 Aligned_cols=136 Identities=12% Similarity=0.076 Sum_probs=90.6
Q ss_pred HHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 038114 26 ALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS-QPDVVLQNYILNMYGKCGSLEDARVVSDEM 104 (170)
Q Consensus 26 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 104 (170)
++..|++. ...+ .++..++..+-.++...|++++|++++.+....+- .-+...+..++..+.+.|+++.|.+.+++|
T Consensus 85 a~~~l~~l-~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENL-LKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHT-TTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-HhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55666665 4443 45555555777777888888888888888766653 235777888888888888888888888888
Q ss_pred ccCCCCCCC-----ChhhHHHHHHH----HhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccccC
Q 038114 105 PQRNVIESP-----DLASWNAIIAG----VASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 105 ~~~~~~~~p-----~~~~~~~li~~----~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~~ 169 (170)
.+. .| +..+...+..+ ....+....|+.+|+++.+. .|+..+-..++.++.+.|+++++
T Consensus 163 ~~~----~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eA 230 (310)
T 3mv2_B 163 TNA----IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEA 230 (310)
T ss_dssp HHH----SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHH
T ss_pred Hhc----CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHH
Confidence 654 45 23444444444 22234788888888887644 35544444555567777777654
No 72
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.53 E-value=3.2e-06 Score=60.66 Aligned_cols=146 Identities=8% Similarity=-0.035 Sum_probs=105.4
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCC-CcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCC-----CHHHHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNF-RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP-----DVVLQNYILN 86 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~ 86 (170)
+-..+...|++++|++++.+. ...+. .-+...+..++..+.+.|+.+.|.+.++.|.+. .| +-.+...|..
T Consensus 106 la~i~~~~g~~eeAL~~l~~~-i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Lae 182 (310)
T 3mv2_B 106 LATAQAILGDLDKSLETCVEG-IDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAE 182 (310)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH-HTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH-hccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHH
Confidence 688889999999999999987 55554 236668889999999999999999999999876 55 2455555655
Q ss_pred H--HHc--CCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC-----CC----CCCHhhH
Q 038114 87 M--YGK--CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR-----EL----IPDGLTV 153 (170)
Q Consensus 87 ~--~~~--~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----~~----~p~~~t~ 153 (170)
+ ... .+++++|..+|+++.+. .|+..+-..++.++.+.|++++|+..++.+.+. +. .-|..+.
T Consensus 183 a~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L 258 (310)
T 3mv2_B 183 SYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL 258 (310)
T ss_dssp HHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence 5 222 34899999999998654 344334445555888999999999999976653 11 2355555
Q ss_pred HHHHHHhcCCCc
Q 038114 154 RSLLCACTSPSN 165 (170)
Q Consensus 154 ~~ll~~~~~~g~ 165 (170)
..+|......|+
T Consensus 259 aN~i~l~~~lgk 270 (310)
T 3mv2_B 259 ANQITLALMQGL 270 (310)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhCh
Confidence 455544444443
No 73
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.52 E-value=9.4e-07 Score=68.35 Aligned_cols=132 Identities=6% Similarity=-0.104 Sum_probs=106.7
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 86 (170)
...|. +-..+.+.|++++|...|++. .+.. +-+...+..+-.++...|++++|.+.+++..+.. +.+...+..+-.
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 99 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRG-LALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGH 99 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH-HTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34455 788888999999999999998 5543 2356688888888999999999999999988764 335788999999
Q ss_pred HHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCC---CChHHHHHHHHHHHhCC
Q 038114 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP---SNANEAMSLFSEMRDRE 145 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~l~~~m~~~~ 145 (170)
.|.+.|++++|.+.|++..+... .+...+..+...+... |+.++|...+++..+.+
T Consensus 100 ~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 100 ALEDAGQAEAAAAAYTRAHQLLP---EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99999999999999998776533 3456788888888888 99999999999887654
No 74
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.52 E-value=3.7e-06 Score=65.01 Aligned_cols=142 Identities=7% Similarity=-0.079 Sum_probs=100.4
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 038114 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99 (170)
Q Consensus 20 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 99 (170)
.|++++|...|++. .+.. +-+...+..+-..+...|++++|...|++..+.. +.+...+..+-..|.+.|++++|.+
T Consensus 2 ~g~~~~A~~~~~~a-l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAA-VRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 47889999999887 4432 2346678888888999999999999999998864 3358899999999999999999999
Q ss_pred HHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCC---Ccccc
Q 038114 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSP---SNVLY 168 (170)
Q Consensus 100 ~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~---g~~e~ 168 (170)
.|++..+... .+...|..+...+...|++++|...|++..+.. .-+...+..+...+... |+.++
T Consensus 79 ~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~ 146 (568)
T 2vsy_A 79 LLQQASDAAP---EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDV 146 (568)
T ss_dssp HHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHH
Confidence 9998876533 456788899999999999999999999887654 22466778888888777 55543
No 75
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.51 E-value=1.6e-06 Score=60.22 Aligned_cols=151 Identities=10% Similarity=-0.090 Sum_probs=110.8
Q ss_pred hHhHHHhhhcccCCHHHHHHHHHHHHhhCCC-Ccc-hhhHHHHHHHhhcccchHHHHHHHHHHHhcCC-C-CCHHHHHHH
Q 038114 9 LRFTFYNSQPIQNLYNEALVAFDFLQNNTNF-RIR-PSTYACLISTCSSLRSLQLGRKVHDHILSSKS-Q-PDVVLQNYI 84 (170)
Q Consensus 9 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~-~~~~~~~~l 84 (170)
..|.+-..+.+.|++++|...|+++ ..... .|. ...+..+-.++.+.|++++|...|+...+... . .....+..+
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~-l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAV-FTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-GGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-HHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 3345788889999999999999998 55431 111 56778888889999999999999999988532 2 235677778
Q ss_pred HHHHHc--------CCCHHHHHHHHhhcccCCCCCCCChhhH-----------------HHHHHHHhCCCChHHHHHHHH
Q 038114 85 LNMYGK--------CGSLEDARVVSDEMPQRNVIESPDLASW-----------------NAIIAGVASPSNANEAMSLFS 139 (170)
Q Consensus 85 i~~~~~--------~~~~~~a~~~~~~m~~~~~~~~p~~~~~-----------------~~li~~~~~~g~~~~a~~l~~ 139 (170)
-.++.+ .|++++|...|++...... -+.... ..+...|...|++++|...|+
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP---NHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT---TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHCc---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 888888 9999999999999876533 112233 445677889999999999999
Q ss_pred HHHhCCC-CC-CHhhHHHHHHHhcCC
Q 038114 140 EMRDREL-IP-DGLTVRSLLCACTSP 163 (170)
Q Consensus 140 ~m~~~~~-~p-~~~t~~~ll~~~~~~ 163 (170)
+..+..- .| ....+..+..+|...
T Consensus 173 ~~l~~~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 173 AVFDAYPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 9886531 11 234566666666654
No 76
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.51 E-value=7e-07 Score=63.42 Aligned_cols=157 Identities=7% Similarity=-0.115 Sum_probs=113.3
Q ss_pred hH-HHhhhcccCCHHHHHHHHHHHHhh----CCCCcc-hhhHHHHHHHhhcccchHHHHHHHHHHHhc----CCCC-CHH
Q 038114 11 FT-FYNSQPIQNLYNEALVAFDFLQNN----TNFRIR-PSTYACLISTCSSLRSLQLGRKVHDHILSS----KSQP-DVV 79 (170)
Q Consensus 11 ~~-li~~~~~~~~~~~a~~~~~~m~~~----~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~ 79 (170)
|. ....|...|++++|...|++. .. .|-.++ ..+|+.+-.+|.+.|++++|...|.+..+. |-.. -..
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKA-ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 44 566788899999999999876 33 232222 458889999999999999999999887653 2111 145
Q ss_pred HHHHHHHHHHcC-CCHHHHHHHHhhcccCCCCC--CC-ChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHh----
Q 038114 80 LQNYILNMYGKC-GSLEDARVVSDEMPQRNVIE--SP-DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL---- 151 (170)
Q Consensus 80 ~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~--~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~---- 151 (170)
+++.+-..|... |++++|...|++..+..... .+ ...+|+.+...+.+.|++++|...|++...........
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 888899999996 99999999999765431100 01 13568888999999999999999999988764332221
Q ss_pred --hHHHHHHHhcCCCcccc
Q 038114 152 --TVRSLLCACTSPSNVLY 168 (170)
Q Consensus 152 --t~~~ll~~~~~~g~~e~ 168 (170)
.|..+..++...|+.++
T Consensus 199 ~~~~~~lg~~~~~~g~~~~ 217 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVA 217 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHH
Confidence 45666666777776554
No 77
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.51 E-value=3.6e-06 Score=64.50 Aligned_cols=142 Identities=8% Similarity=-0.013 Sum_probs=106.9
Q ss_pred cCCHH-------HHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHc
Q 038114 20 QNLYN-------EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD--VVLQNYILNMYGK 90 (170)
Q Consensus 20 ~~~~~-------~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~ 90 (170)
.|+++ +|+.+|++. ...-.+-+...|..+...+.+.|++++|..+|+...+. .|+ ...|..+...+.+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~A-l~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~ 368 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERA-ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARR 368 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH-TTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHH-HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHH
Confidence 68877 899999998 54222335778889999999999999999999999985 443 3589999999999
Q ss_pred CCCHHHHHHHHhhcccCCCCCCCChhhHHHHH-HHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCcccc
Q 038114 91 CGSLEDARVVSDEMPQRNVIESPDLASWNAII-AGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 91 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li-~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~ 168 (170)
.|++++|.++|+...+... .+...|-... ..+...|+.++|..+|+...+.. .-+...|..++..+.+.|+.++
T Consensus 369 ~~~~~~A~~~~~~Al~~~~---~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~ 443 (530)
T 2ooe_A 369 AEGIKSGRMIFKKAREDAR---TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNN 443 (530)
T ss_dssp HHHHHHHHHHHHHHHTCTT---CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHH
T ss_pred hcCHHHHHHHHHHHHhccC---CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhh
Confidence 9999999999998876432 1222222221 22335899999999999887653 2256778888888888887764
No 78
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.49 E-value=4.2e-06 Score=49.74 Aligned_cols=98 Identities=7% Similarity=-0.117 Sum_probs=49.9
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHH
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~ 124 (170)
.+..+-..+...|++++|...|++..+.. +.+...+..+-..+.+.|++++|.+.|++..+.... ..+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHHHHHHHH
Confidence 34444444555555555555555554432 223445555555555556666666655555443220 0134455555555
Q ss_pred HhCC-CChHHHHHHHHHHHhC
Q 038114 125 VASP-SNANEAMSLFSEMRDR 144 (170)
Q Consensus 125 ~~~~-g~~~~a~~l~~~m~~~ 144 (170)
+... |++++|.+.+.+....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5566 6666666666555443
No 79
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.49 E-value=3.1e-06 Score=55.24 Aligned_cols=126 Identities=12% Similarity=0.072 Sum_probs=98.5
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHcCC
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNM-YGKCG 92 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~ 92 (170)
...+...|++++|...++.. .... +.+...+..+-.++...|++++|...|....+.. +.+...+..+... |.+.|
T Consensus 17 ~~~~~~~~~~~~A~~~~~~a-l~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 17 LHQFASQQNPEAQLQALQDK-IRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQAS 93 (177)
T ss_dssp TCCCC-----CCCCHHHHHH-HHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTT
T ss_pred hhhhhhccCHHHHHHHHHHH-HHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcC
Confidence 34567889999999999887 4432 2466788889999999999999999999998764 3367788888888 78899
Q ss_pred CH--HHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCC
Q 038114 93 SL--EDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145 (170)
Q Consensus 93 ~~--~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 145 (170)
++ ++|...|+....... -+...+..+...+...|++++|...|++..+..
T Consensus 94 ~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALDS---NEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp TCCCHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CcchHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 98 999999998876533 346778888899999999999999999987653
No 80
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.48 E-value=2.9e-06 Score=51.84 Aligned_cols=117 Identities=8% Similarity=-0.073 Sum_probs=92.4
Q ss_pred hHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038114 9 LRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNM 87 (170)
Q Consensus 9 ~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 87 (170)
..+. +...+...|++++|...|++. .... +.+...+..+-.++...|++++|...+....+.. +.+...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKA-IELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH-HHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3444 688888999999999999998 5432 2356788888899999999999999999998864 3458889999999
Q ss_pred HHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCCh
Q 038114 88 YGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNA 131 (170)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~ 131 (170)
|.+.|++++|.+.|++...... .+...+..+...+...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP---DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHhcC
Confidence 9999999999999998876533 3456666666666655543
No 81
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.47 E-value=1.3e-06 Score=61.88 Aligned_cols=150 Identities=9% Similarity=-0.047 Sum_probs=110.8
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhh-CCCCcchh----hHHHHHHHhhcccchHHHHHHHHHHHhcCC-CCC----HHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNN-TNFRIRPS----TYACLISTCSSLRSLQLGRKVHDHILSSKS-QPD----VVLQN 82 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~-~~~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~ 82 (170)
.+..+...|++++|..++++. .. ....|+.. .+..+...+...+++++|...|.+..+... .++ ..+++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~-l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNE-LKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHH-hccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 377889999999999999998 54 33344432 333466667778899999999999987322 222 34799
Q ss_pred HHHHHHHcCCCHHHHHHHHhhccc----C-CCCCCCC-hhhHHHHHHHHhCCCChHHHHHHHHHHHhC----CCCCC-Hh
Q 038114 83 YILNMYGKCGSLEDARVVSDEMPQ----R-NVIESPD-LASWNAIIAGVASPSNANEAMSLFSEMRDR----ELIPD-GL 151 (170)
Q Consensus 83 ~li~~~~~~~~~~~a~~~~~~m~~----~-~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~p~-~~ 151 (170)
.+-..|...|++++|...|++..+ . +. .+. ..+|..+...|...|++++|...+++..+. +-.+. ..
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDN--EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 999999999999999999998763 1 12 222 347889999999999999999999877542 32222 56
Q ss_pred hHHHHHHHhcCCCc
Q 038114 152 TVRSLLCACTSPSN 165 (170)
Q Consensus 152 t~~~ll~~~~~~g~ 165 (170)
+|..+-.++.+.|+
T Consensus 238 ~~~~lg~~~~~~g~ 251 (293)
T 3u3w_A 238 LYYQRGECLRKLEY 251 (293)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCC
Confidence 67777777777774
No 82
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.46 E-value=5.6e-06 Score=50.84 Aligned_cols=114 Identities=11% Similarity=-0.038 Sum_probs=88.6
Q ss_pred chhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038114 7 TQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85 (170)
Q Consensus 7 ~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 85 (170)
+...|. +...+.+.|++++|...|++. .... +.+...+..+-.++...|++++|...+++..+.. +.+...+..+-
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a-l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEA-IKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHH-HTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 344555 788899999999999999998 5543 2367788888999999999999999999998864 34688999999
Q ss_pred HHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHh
Q 038114 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVA 126 (170)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~ 126 (170)
..|.+.|++++|.+.|++...... -+...+..+...+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDS---SCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCG---GGTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCC---CchHHHHHHHHHHH
Confidence 999999999999999998775432 12234444444443
No 83
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.45 E-value=3.9e-07 Score=59.77 Aligned_cols=150 Identities=11% Similarity=0.031 Sum_probs=100.8
Q ss_pred HHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHc
Q 038114 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNM-YGK 90 (170)
Q Consensus 12 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~ 90 (170)
.....+.+.|++++|...|++. .... +-+...+..+-.++...|++++|...++...+.. |++..+..+... +.+
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~a-l~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTL-SDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS-CHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH-HHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 3677788889999999999887 3321 1245577778888888999999999988876543 244433332211 112
Q ss_pred CCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHhcCCCcccc
Q 038114 91 CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP-DGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 91 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~e~ 168 (170)
.+....|...|+...+... -+...+..+-..+...|++++|...|++..+..-.+ +...+..+...+...|+.++
T Consensus 87 ~~~~~~a~~~~~~al~~~P---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANP---DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHTSCHHHHHHHHHHHHST---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hcccchHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 2223346777776665422 346778888888888999999999998887654322 35577788888887777764
No 84
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.43 E-value=4e-06 Score=60.88 Aligned_cols=129 Identities=10% Similarity=-0.067 Sum_probs=104.2
Q ss_pred hHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcc--------------hhhHHHHHHHhhcccchHHHHHHHHHHHhcC
Q 038114 9 LRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIR--------------PSTYACLISTCSSLRSLQLGRKVHDHILSSK 73 (170)
Q Consensus 9 ~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 73 (170)
..|. +-..+.+.|++++|+..|++. ........ ...|..+-.++.+.|++++|...+....+..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~A-l~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKI-VSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH-HHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH-HHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3444 678889999999999999998 54432221 4788889999999999999999999998864
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHH-HHHHHHHH
Q 038114 74 SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA-MSLFSEMR 142 (170)
Q Consensus 74 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a-~~l~~~m~ 142 (170)
+.+...|..+-.+|.+.|++++|...|++..+... -+...+..+...+...|+.++| ..++..|.
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P---~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP---NNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999998876533 3557788888889999999888 44666664
No 85
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.42 E-value=5.5e-06 Score=61.30 Aligned_cols=150 Identities=9% Similarity=-0.003 Sum_probs=106.3
Q ss_pred chhHhH-HHhhhcccCC-HHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038114 7 TQLRFT-FYNSQPIQNL-YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84 (170)
Q Consensus 7 ~~~~~~-li~~~~~~~~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 84 (170)
+...|+ +-..+...|+ +++|+..|++. ..... -+...|..+-.++...|++++|...|+...+.. +-+...|..+
T Consensus 130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~a-l~l~P-~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~l 206 (382)
T 2h6f_A 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAI-IEEQP-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHR 206 (382)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHH-HHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccCHHHHHHHHHHH-HHHCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHH
Confidence 345566 6777888886 99999999888 54332 255677777788888888999999998888764 3357888888
Q ss_pred HHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhC-CCChHHH-----HHHHHHHHhCCCCC-CHhhHHHHH
Q 038114 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS-PSNANEA-----MSLFSEMRDRELIP-DGLTVRSLL 157 (170)
Q Consensus 85 i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~-~g~~~~a-----~~l~~~m~~~~~~p-~~~t~~~ll 157 (170)
-.++.+.|++++|...|+++.+.+. -+...|+.+-..+.. .|..++| +..|++.... .| +...|..+-
T Consensus 207 g~~~~~~g~~~eAl~~~~~al~l~P---~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~ 281 (382)
T 2h6f_A 207 QWVIQEFKLWDNELQYVDQLLKEDV---RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLK 281 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHH
Confidence 8888888888888888888876544 355677777777777 5554666 3666655543 23 344566666
Q ss_pred HHhcCCC
Q 038114 158 CACTSPS 164 (170)
Q Consensus 158 ~~~~~~g 164 (170)
..+.+.|
T Consensus 282 ~ll~~~g 288 (382)
T 2h6f_A 282 GILQDRG 288 (382)
T ss_dssp HHHTTTC
T ss_pred HHHHccC
Confidence 6666655
No 86
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.42 E-value=4.4e-06 Score=53.74 Aligned_cols=98 Identities=6% Similarity=-0.117 Sum_probs=81.4
Q ss_pred hhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHH
Q 038114 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIA 123 (170)
Q Consensus 44 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~ 123 (170)
..+..+-..+.+.|++++|...|+...+.. +-++..|..+-.+|.+.|++++|...|++...... -+...|..+-.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P---~~~~~~~~lg~ 112 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK---NDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS---SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC---CCcHHHHHHHH
Confidence 356667777888999999999999998864 44688999999999999999999999998876544 34567888889
Q ss_pred HHhCCCChHHHHHHHHHHHhCC
Q 038114 124 GVASPSNANEAMSLFSEMRDRE 145 (170)
Q Consensus 124 ~~~~~g~~~~a~~l~~~m~~~~ 145 (170)
+|...|++++|...|++..+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999887653
No 87
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.41 E-value=1.3e-05 Score=49.70 Aligned_cols=95 Identities=6% Similarity=-0.056 Sum_probs=55.8
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHH
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~ 124 (170)
.+.-.=..+.+.|++++|...|.+..+.. +.+...|..+-.+|.+.|++++|...|+...+.+. .+...|..+-..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~a~~~lg~~ 90 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS---KFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh---hhhHHHHHHHHH
Confidence 34444455556666666666666665543 23456666666666666666666666666554322 234556666666
Q ss_pred HhCCCChHHHHHHHHHHHh
Q 038114 125 VASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 125 ~~~~g~~~~a~~l~~~m~~ 143 (170)
+...|++++|...|++..+
T Consensus 91 ~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6666666666666665554
No 88
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.40 E-value=1.1e-05 Score=57.08 Aligned_cols=155 Identities=9% Similarity=-0.090 Sum_probs=111.8
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCC-Ccch----hhHHHHHHHhhcccchHHHHHHHHHHHhcC---CCCC--HHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNF-RIRP----STYACLISTCSSLRSLQLGRKVHDHILSSK---SQPD--VVLQN 82 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~--~~~~~ 82 (170)
.+..+...|++++|.+.+.+. ..... .++. ..+..+...+...|++++|...+.+..+.. ..+. ..+|+
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNE-LKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHH-hccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 577888999999999999887 44322 2221 123345556678889999999999887532 1222 45899
Q ss_pred HHHHHHHcCCCHHHHHHHHhhccc---CCCCCCC--ChhhHHHHHHHHhCCCChHHHHHHHHHHHhCC----CCC-CHhh
Q 038114 83 YILNMYGKCGSLEDARVVSDEMPQ---RNVIESP--DLASWNAIIAGVASPSNANEAMSLFSEMRDRE----LIP-DGLT 152 (170)
Q Consensus 83 ~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~----~~p-~~~t 152 (170)
.+-..|...|++++|...|++..+ .... .+ ...+|+.+...|...|++++|...+++..+.. ... -..+
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~-~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc-cccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 999999999999999999998752 1110 11 22588899999999999999999999876432 111 2567
Q ss_pred HHHHHHHhcCCCccccC
Q 038114 153 VRSLLCACTSPSNVLYL 169 (170)
Q Consensus 153 ~~~ll~~~~~~g~~e~~ 169 (170)
|..+-..|.+.|+.+++
T Consensus 239 ~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHcCCcHHH
Confidence 78888888888887653
No 89
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.39 E-value=1.4e-06 Score=61.88 Aligned_cols=149 Identities=13% Similarity=-0.032 Sum_probs=103.8
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHH-HHHHHHcC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY-ILNMYGKC 91 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~~ 91 (170)
+-..+.+.|++++|...|++. .... +-+...+..+-..+.+.|++++|...++..... .|+...... ....+.+.
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~a-l~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~ 198 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDA-WQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQ 198 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHH-HHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhh
Confidence 566677788888888888877 4432 124556777777788888888888888877654 334332222 22235556
Q ss_pred CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCC-CCCHhhHHHHHHHhcCCCcccc
Q 038114 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL-IPDGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-~p~~~t~~~ll~~~~~~g~~e~ 168 (170)
++.+.|.+.|+....... .+...+..+-..+...|++++|...|.+..+..- ..+...+..+...+...|+.++
T Consensus 199 ~~~~~a~~~l~~al~~~P---~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 199 AADTPEIQQLQQQVAENP---EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HTSCHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred cccCccHHHHHHHHhcCC---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 667777777776665433 4567888888999999999999999999887642 2336678888888888887664
No 90
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.39 E-value=3.2e-06 Score=51.70 Aligned_cols=99 Identities=9% Similarity=0.070 Sum_probs=53.4
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCC----hhhHHH
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPD----LASWNA 120 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~----~~~~~~ 120 (170)
.+..+-..+...|+++.|...|....+.. +.+...+..+...|...|++++|...|+..........++ ..+|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444455555566666666666555442 2245555566666666666666666666554322100111 445555
Q ss_pred HHHHHhCCCChHHHHHHHHHHHhC
Q 038114 121 IIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 121 li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
+...+...|++++|...|++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 566666666666666666665543
No 91
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.38 E-value=7e-06 Score=55.70 Aligned_cols=123 Identities=11% Similarity=-0.016 Sum_probs=97.8
Q ss_pred cchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHH
Q 038114 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNA 120 (170)
Q Consensus 41 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ 120 (170)
.|+..+...-..+...|++++|...|....+....++...+..+-.++.+.|++++|.+.|+....... -+...|..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY---NLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---SHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc---chHHHHHH
Confidence 356777778888899999999999999999876446778888899999999999999999999886543 35677888
Q ss_pred HHHHHhCCCChHHHHHHHHHHHhCCCCCC-H-------hhHHHHHHHhcCCCcccc
Q 038114 121 IIAGVASPSNANEAMSLFSEMRDRELIPD-G-------LTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 121 li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~-------~t~~~ll~~~~~~g~~e~ 168 (170)
+-..+...|++++|...|++..+.. |+ . ..|..+-..+.+.|++++
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 135 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEK 135 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHH
Confidence 9999999999999999999887653 33 2 345555556666666554
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.38 E-value=8.1e-06 Score=55.59 Aligned_cols=159 Identities=8% Similarity=-0.050 Sum_probs=106.3
Q ss_pred chhHhHHHhhhcccCCHHHHHHHHHHHHhhCC-CCc-chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCC-CCH-HHHH
Q 038114 7 TQLRFTFYNSQPIQNLYNEALVAFDFLQNNTN-FRI-RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQ-PDV-VLQN 82 (170)
Q Consensus 7 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~-~~~~ 82 (170)
+...|++...+.+.|++++|...|+++ .... -.| ....+..+-.++.+.|++++|...|+.+.+.... +.. ..+-
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~-~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEAL-DNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 334455778889999999999999998 5432 222 2356777888899999999999999999875322 221 2333
Q ss_pred HHHHHHH------------------cCCCHHHHHHHHhhcccCCCCCCCChhhH-----------------HHHHHHHhC
Q 038114 83 YILNMYG------------------KCGSLEDARVVSDEMPQRNVIESPDLASW-----------------NAIIAGVAS 127 (170)
Q Consensus 83 ~li~~~~------------------~~~~~~~a~~~~~~m~~~~~~~~p~~~~~-----------------~~li~~~~~ 127 (170)
.+-.++. ..|++++|...|++..+.... +...+ -.+...+.+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~---~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~ 159 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN---SQYTTDATKRLVFLKDRLAKYEYSVAEYYTE 159 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 257899999999988765331 11122 133456778
Q ss_pred CCChHHHHHHHHHHHhCCC-CC-CHhhHHHHHHHhcCCCccccC
Q 038114 128 PSNANEAMSLFSEMRDREL-IP-DGLTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 128 ~g~~~~a~~l~~~m~~~~~-~p-~~~t~~~ll~~~~~~g~~e~~ 169 (170)
.|++++|...|+++.+.-- .| ....+..+..++.+.|+.+++
T Consensus 160 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 160 RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 8999999999998876521 11 124677788888888877653
No 93
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=2.3e-05 Score=46.85 Aligned_cols=91 Identities=10% Similarity=-0.092 Sum_probs=45.8
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
+...+...|++++|...|+.. .... +.+...+..+-.++...|++++|...+.+..+.. +.+...+..+..++.+.|
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEA-IKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHH-HHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHh
Confidence 455555555555555555555 3221 1233444445555555555555555555554432 223445555555555555
Q ss_pred CHHHHHHHHhhccc
Q 038114 93 SLEDARVVSDEMPQ 106 (170)
Q Consensus 93 ~~~~a~~~~~~m~~ 106 (170)
++++|.+.|+...+
T Consensus 87 ~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 87 RFEEAKRTYEEGLK 100 (118)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555555443
No 94
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.35 E-value=1.3e-05 Score=49.71 Aligned_cols=98 Identities=8% Similarity=-0.100 Sum_probs=54.5
Q ss_pred chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHH
Q 038114 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121 (170)
Q Consensus 42 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l 121 (170)
+...+..+-..+...|++++|...|....+.. +.+...|..+-.+|.+.|++++|...|+....... .+...|..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG---QSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc---hhHHHHHHH
Confidence 34455555555556666666666666555542 22355566666666666666666666665554322 234455555
Q ss_pred HHHHhCCCChHHHHHHHHHHHh
Q 038114 122 IAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 122 i~~~~~~g~~~~a~~l~~~m~~ 143 (170)
-..+...|++++|...|.+...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 5666666666666666655543
No 95
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.33 E-value=3.9e-06 Score=53.68 Aligned_cols=98 Identities=5% Similarity=-0.042 Sum_probs=82.8
Q ss_pred hhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHH
Q 038114 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIA 123 (170)
Q Consensus 44 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~ 123 (170)
..+..+-..+...|+++.|...|....+.. +.+...+..+...+...|++++|.+.|++...... .+...|..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK---KYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---ccHHHHHHHHH
Confidence 356667777888999999999999998764 34688999999999999999999999998876533 45678888899
Q ss_pred HHhCCCChHHHHHHHHHHHhCC
Q 038114 124 GVASPSNANEAMSLFSEMRDRE 145 (170)
Q Consensus 124 ~~~~~g~~~~a~~l~~~m~~~~ 145 (170)
.+...|++++|...|++.....
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVK 111 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHhccHHHHHHHHHHHHHhC
Confidence 9999999999999999987653
No 96
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.33 E-value=3.7e-05 Score=45.85 Aligned_cols=100 Identities=12% Similarity=0.003 Sum_probs=84.6
Q ss_pred chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHH
Q 038114 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121 (170)
Q Consensus 42 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l 121 (170)
....+..+...+...|++++|...|....+.. +.+...+..+...+.+.|++++|...+++...... .+...+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~ 78 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP---DWGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc---ccHHHHHHH
Confidence 34567778888889999999999999998764 34688899999999999999999999998876533 356788888
Q ss_pred HHHHhCCCChHHHHHHHHHHHhCC
Q 038114 122 IAGVASPSNANEAMSLFSEMRDRE 145 (170)
Q Consensus 122 i~~~~~~g~~~~a~~l~~~m~~~~ 145 (170)
...+...|++++|...+++..+..
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcC
Confidence 999999999999999999887653
No 97
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.32 E-value=1.1e-05 Score=51.57 Aligned_cols=98 Identities=8% Similarity=-0.134 Sum_probs=70.1
Q ss_pred hhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHH
Q 038114 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122 (170)
Q Consensus 43 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li 122 (170)
...+..+-..+.+.|++++|...|....+.. +.+...|..+-.+|.+.|++++|...|+....... -+...|..+-
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p---~~~~~~~~lg 96 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI---XEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---CCchHHHHHH
Confidence 3355556666777788888888888777653 33577777777788888888888888887765433 3445677777
Q ss_pred HHHhCCCChHHHHHHHHHHHhC
Q 038114 123 AGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 123 ~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
..+...|++++|...|+...+.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7788888888888888776653
No 98
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.2e-05 Score=49.33 Aligned_cols=94 Identities=7% Similarity=-0.047 Sum_probs=50.2
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHH
Q 038114 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGV 125 (170)
Q Consensus 46 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~ 125 (170)
+..+-..+.+.|++++|...|.+..+.. +.+...|..+-.+|.+.|++++|...|+...+... -+...|..+-..+
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~ 82 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP---NFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHH
Confidence 3344444555555555555555555442 22355555555666666666666666655544322 2344555555555
Q ss_pred hCCCChHHHHHHHHHHHh
Q 038114 126 ASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 126 ~~~g~~~~a~~l~~~m~~ 143 (170)
...|++++|...|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 666666666666655543
No 99
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.31 E-value=1.2e-05 Score=50.69 Aligned_cols=96 Identities=10% Similarity=-0.122 Sum_probs=58.8
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHH
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~ 124 (170)
.+..+-..+.+.|++++|...|....+.. +.+...|..+-.+|.+.|++++|...|+.....+. -+...|..+-..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~ 95 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI---NEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---CCcHHHHHHHHH
Confidence 33444455566677777777777666543 23466666666667777777777777776654432 233455666666
Q ss_pred HhCCCChHHHHHHHHHHHhC
Q 038114 125 VASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 125 ~~~~g~~~~a~~l~~~m~~~ 144 (170)
+...|++++|...|+.....
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66777777777777665543
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.30 E-value=4.2e-06 Score=66.37 Aligned_cols=87 Identities=10% Similarity=-0.027 Sum_probs=46.3
Q ss_pred cccCCHHHHHHHHHHHHhh-------CCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 038114 18 PIQNLYNEALVAFDFLQNN-------TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90 (170)
Q Consensus 18 ~~~~~~~~a~~~~~~m~~~-------~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 90 (170)
...|++++|++.+++. .. ..-+.+...+..+-.++...|++++|...|++..+.. +-+...|..+-.+|.+
T Consensus 402 ~~~~~~~~A~~~~~~a-l~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAA-RHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHH-HTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHh-hhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 4556666666666655 30 1112233445555555556666666666666655542 2245555555556666
Q ss_pred CCCHHHHHHHHhhccc
Q 038114 91 CGSLEDARVVSDEMPQ 106 (170)
Q Consensus 91 ~~~~~~a~~~~~~m~~ 106 (170)
.|++++|.+.|++..+
T Consensus 480 ~g~~~~A~~~~~~al~ 495 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD 495 (681)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666655443
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.30 E-value=1.2e-05 Score=52.65 Aligned_cols=129 Identities=10% Similarity=-0.031 Sum_probs=93.9
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHH-hhcccchHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLIST-CSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 85 (170)
...+. +-..+.+.|++++|...|+.. .... |++..+..+... +...+....+...++...+.. +-+...+..+-
T Consensus 40 ~~a~~~la~~~~~~g~~~~A~~~~~~a-~~~~--p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la 115 (176)
T 2r5s_A 40 GDVKLAKADCLLETKQFELAQELLATI-PLEY--QDNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELA 115 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTC-CGGG--CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHh-hhcc--CChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 33444 788899999999999999998 4432 344333222111 122223344678888877653 33588999999
Q ss_pred HHHHcCCCHHHHHHHHhhcccCCCCCCC-ChhhHHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 86 NMYGKCGSLEDARVVSDEMPQRNVIESP-DLASWNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
..+.+.|++++|...|++..+... .+ +...+..+...+...|+.++|...|++..
T Consensus 116 ~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 116 VQYNQVGRDEEALELLWNILKVNL--GAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCT--TTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHhCc--ccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 999999999999999999887654 33 35688899999999999999999998654
No 102
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.30 E-value=2.3e-05 Score=46.40 Aligned_cols=98 Identities=7% Similarity=-0.042 Sum_probs=81.6
Q ss_pred hHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCC--CHHHHHHHH
Q 038114 9 LRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP--DVVLQNYIL 85 (170)
Q Consensus 9 ~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li 85 (170)
..|. +...+.+.|++++|...|++. .... +.+...+..+-.++...|++++|...|++..+.. +. +...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a-~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKA-IQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHH-HHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH-HHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3444 788889999999999999998 5433 2356678888888999999999999999998864 33 588999999
Q ss_pred HHHHcC-CCHHHHHHHHhhcccCCC
Q 038114 86 NMYGKC-GSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 86 ~~~~~~-~~~~~a~~~~~~m~~~~~ 109 (170)
..+.+. |++++|.+.|+.......
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhccc
Confidence 999999 999999999999876544
No 103
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.29 E-value=4.5e-06 Score=61.20 Aligned_cols=155 Identities=9% Similarity=-0.066 Sum_probs=106.1
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhC----CCCc-chhhHHHHHHHhhcccchHHHHHHHHHHHhc--CC---CC-CHHHHH
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNT----NFRI-RPSTYACLISTCSSLRSLQLGRKVHDHILSS--KS---QP-DVVLQN 82 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~---~~-~~~~~~ 82 (170)
-..+...|++++|...|++. ... +-.+ ...++..+-.++...|+++.|...+.+..+. .. .+ ...+++
T Consensus 110 g~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKA-ESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-HTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHH-HHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44567789999999999887 442 1112 2346777788888889999998888877652 11 11 245777
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcccCCCC---CCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC----CC-CCCHhhHH
Q 038114 83 YILNMYGKCGSLEDARVVSDEMPQRNVI---ESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR----EL-IPDGLTVR 154 (170)
Q Consensus 83 ~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~-~p~~~t~~ 154 (170)
.+-..|...|++++|.+.|++..+.... ......++..+-..|...|++++|...|++..+. +- .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888888899999999888876532110 0111246777888888889999999888877652 22 33455677
Q ss_pred HHHHHhcCCCccccC
Q 038114 155 SLLCACTSPSNVLYL 169 (170)
Q Consensus 155 ~ll~~~~~~g~~e~~ 169 (170)
.+-..+.+.|+.+++
T Consensus 269 ~l~~~~~~~g~~~~A 283 (383)
T 3ulq_A 269 LITQIHYKLGKIDKA 283 (383)
T ss_dssp HHHHHHHHTTCHHHH
T ss_pred HHHHHHHHCCCHHHH
Confidence 777778777776543
No 104
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.28 E-value=1.6e-06 Score=57.46 Aligned_cols=83 Identities=11% Similarity=-0.040 Sum_probs=34.1
Q ss_pred ccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHcCCC
Q 038114 19 IQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS----KSQP-DVVLQNYILNMYGKCGS 93 (170)
Q Consensus 19 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~ 93 (170)
..|++++|.+.++.. .. ........+..+-..+...|++++|...+.+..+. +..+ ...++..+-..|...|+
T Consensus 4 ~~g~~~~A~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQAL-LA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHH-HT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHh-cC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 344555555533333 21 11122334444444445555555555555444431 1111 12344444444555555
Q ss_pred HHHHHHHHhh
Q 038114 94 LEDARVVSDE 103 (170)
Q Consensus 94 ~~~a~~~~~~ 103 (170)
+++|.+.|++
T Consensus 82 ~~~A~~~~~~ 91 (203)
T 3gw4_A 82 WDAARRCFLE 91 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 105
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.27 E-value=1.4e-05 Score=51.47 Aligned_cols=97 Identities=6% Similarity=-0.083 Sum_probs=71.7
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 86 (170)
...|. +-..+.+.|++++|+..|++. .... +-+...|..+-.++.+.|++++|...|+...+.. +-+...|..+-.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~a-l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQA-LSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 33444 677788888888888888887 4432 2256677777778888888888888888887764 334778888888
Q ss_pred HHHcCCCHHHHHHHHhhcccC
Q 038114 87 MYGKCGSLEDARVVSDEMPQR 107 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~ 107 (170)
+|.+.|++++|.+.|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888877654
No 106
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.27 E-value=1.6e-05 Score=67.08 Aligned_cols=136 Identities=10% Similarity=0.084 Sum_probs=98.5
Q ss_pred cchhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038114 6 KTQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYI 84 (170)
Q Consensus 6 ~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 84 (170)
.+..+|. +-.++.+.|++++|...|.+. -|...|.-++.+|.+.|+++++.+.+...++.. +++...+.+
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~L 1173 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETEL 1173 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHH
Confidence 3445666 889999999999999998666 567788889999999999999999998777653 444445568
Q ss_pred HHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCC
Q 038114 85 LNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164 (170)
Q Consensus 85 i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g 164 (170)
..+|++.+++++...... .|+...|..+-..|...|++++|..+|... ..|..+..++.+.|
T Consensus 1174 afaYAKl~rleele~fI~---------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLg 1235 (1630)
T 1xi4_A 1174 IFALAKTNRLAELEEFIN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLG 1235 (1630)
T ss_pred HHHHHhhcCHHHHHHHHh---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhC
Confidence 888888888875444321 344456666777777778888888877763 36777777777766
Q ss_pred cccc
Q 038114 165 NVLY 168 (170)
Q Consensus 165 ~~e~ 168 (170)
++++
T Consensus 1236 e~q~ 1239 (1630)
T 1xi4_A 1236 EYQA 1239 (1630)
T ss_pred CHHH
Confidence 6554
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.27 E-value=3.3e-05 Score=47.86 Aligned_cols=95 Identities=9% Similarity=-0.077 Sum_probs=81.0
Q ss_pred HhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038114 10 RFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY 88 (170)
Q Consensus 10 ~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 88 (170)
.+. .-..|.+.|++++|++.|++. .+.. +.+...|..+-.++.+.|++++|...|+...+.. +.+...|..+-.+|
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~a-l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEA-VKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-HHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 344 688899999999999999998 5432 2467788889999999999999999999998864 34588999999999
Q ss_pred HcCCCHHHHHHHHhhcccC
Q 038114 89 GKCGSLEDARVVSDEMPQR 107 (170)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~ 107 (170)
...|++++|.+.|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 108
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.26 E-value=8.2e-06 Score=57.85 Aligned_cols=132 Identities=8% Similarity=-0.108 Sum_probs=100.0
Q ss_pred hHhH-HHhhhcccCCHHHHHHHHHHHHhhC----CCCc-chhhHHHHHHHhhcc-cchHHHHHHHHHHHhc----CCCCC
Q 038114 9 LRFT-FYNSQPIQNLYNEALVAFDFLQNNT----NFRI-RPSTYACLISTCSSL-RSLQLGRKVHDHILSS----KSQPD 77 (170)
Q Consensus 9 ~~~~-li~~~~~~~~~~~a~~~~~~m~~~~----~~~p-~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~----~~~~~ 77 (170)
..|+ +-..|.+.|++++|+..|++. ... |-.. -..++..+-..|... |++++|...|++..+. +..+.
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~A-l~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENA-IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 4555 888899999999999999887 432 1111 134788888888886 9999999999988763 11111
Q ss_pred -HHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChh------hHHHHHHHHhCCCChHHHHHHHHHHHh
Q 038114 78 -VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLA------SWNAIIAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 78 -~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~------~~~~li~~~~~~g~~~~a~~l~~~m~~ 143 (170)
..+++.+-..|.+.|++++|...|++...... ..... .|..+...+...|++++|...|++...
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSM--GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS--SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh--cCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45788899999999999999999998876544 22211 567777888899999999999997764
No 109
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.26 E-value=4.2e-06 Score=66.37 Aligned_cols=148 Identities=7% Similarity=-0.106 Sum_probs=115.1
Q ss_pred hHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038114 9 LRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNM 87 (170)
Q Consensus 9 ~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 87 (170)
..|. +-..+.+.|++++|+..|++. .+.. +-+...|..+-.++...|++++|...|++..+.. +-+...|..+-.+
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~a-l~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~ 510 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDL-AERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAAT 510 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH-HHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHH-hccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3444 688899999999999999998 5432 2355678888888999999999999999998864 3357788999999
Q ss_pred HHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHhcCCCc
Q 038114 88 YGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD-GLTVRSLLCACTSPSN 165 (170)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~t~~~ll~~~~~~g~ 165 (170)
|.+.|++++ .+.|++..+.+. -+...|..+-..+.+.|++++|...|++..+ +.|+ ...+..+..++...|.
T Consensus 511 ~~~~g~~~~-~~~~~~al~~~P---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 511 AELAGNTDE-HKFYQTVWSTND---GVISAAFGLARARSAEGDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTCCCT-TCHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHHcCChHH-HHHHHHHHHhCC---chHHHHHHHHHHHHHcCCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 999999999 999998876543 3567889999999999999999999986654 4555 4556667777766554
No 110
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=7e-05 Score=46.73 Aligned_cols=98 Identities=7% Similarity=-0.069 Sum_probs=63.4
Q ss_pred chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhh
Q 038114 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD----VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLAS 117 (170)
Q Consensus 42 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~ 117 (170)
+...+..+-..+...|++++|...|.+..+. .|+ ...|..+-..|.+.|++++|.+.|+....... .+...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG---GDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS---CCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc---cCHHH
Confidence 3445566666666777777777777776654 333 56666666777777777777777776654322 24556
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhC
Q 038114 118 WNAIIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 118 ~~~li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
|..+...+...|++++|...|++....
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 666666777777777777777766543
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.21 E-value=1.2e-05 Score=53.73 Aligned_cols=116 Identities=7% Similarity=-0.100 Sum_probs=92.7
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHH
Q 038114 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGV 125 (170)
Q Consensus 46 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~ 125 (170)
+..+-..+...|++++|...|.+. +.|+...|..+-..|.+.|++++|.+.|+....... .+...|..+-..+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK---HLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---cchHHHHHHHHHH
Confidence 444555677889999999999877 366889999999999999999999999998876533 4567889999999
Q ss_pred hCCCChHHHHHHHHHHHhCC--------------CCC-CHhhHHHHHHHhcCCCcccc
Q 038114 126 ASPSNANEAMSLFSEMRDRE--------------LIP-DGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 126 ~~~g~~~~a~~l~~~m~~~~--------------~~p-~~~t~~~ll~~~~~~g~~e~ 168 (170)
...|++++|...|++..+.. ..| +...+..+-.++.+.|+.++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 139 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKK 139 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHH
Confidence 99999999999999988743 112 22567777777877777654
No 112
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.21 E-value=2.8e-06 Score=51.80 Aligned_cols=85 Identities=13% Similarity=0.032 Sum_probs=44.7
Q ss_pred cCCHHHHHHHHHHHHhhCC--CCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 038114 20 QNLYNEALVAFDFLQNNTN--FRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDA 97 (170)
Q Consensus 20 ~~~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 97 (170)
.|++++|+..|++. ...+ -+-+...+..+-.++...|++++|...|++..+.. +-+...+..+-.++.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~a-l~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKA-IASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHH-HSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHH-HHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 45566666666665 4432 11223345555555666666666666666665543 22355555566666666666666
Q ss_pred HHHHhhccc
Q 038114 98 RVVSDEMPQ 106 (170)
Q Consensus 98 ~~~~~~m~~ 106 (170)
...|++...
T Consensus 81 ~~~~~~al~ 89 (117)
T 3k9i_A 81 VELLLKIIA 89 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.21 E-value=0.00027 Score=47.61 Aligned_cols=137 Identities=9% Similarity=-0.008 Sum_probs=104.2
Q ss_pred HHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhccc----chHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038114 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLR----SLQLGRKVHDHILSSKSQPDVVLQNYILNM 87 (170)
Q Consensus 12 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 87 (170)
++-..|...+++++|+..|++. ...| ++..+..|=..|.. + ++++|..+|....+.| ++..+..|-..
T Consensus 23 ~lg~~~~~~~~~~~A~~~~~~a-~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~ 94 (212)
T 3rjv_A 23 YLADTWVSSGDYQKAEYWAQKA-AAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARV 94 (212)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH-HHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHH-HHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 3777778899999999999999 7665 45566666666766 6 8999999999998776 56778888888
Q ss_pred HHc----CCCHHHHHHHHhhcccCCCCCC-CChhhHHHHHHHHhC----CCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038114 88 YGK----CGSLEDARVVSDEMPQRNVIES-PDLASWNAIIAGVAS----PSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158 (170)
Q Consensus 88 ~~~----~~~~~~a~~~~~~m~~~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~ 158 (170)
|.. .+++++|.+.|+...+.+. . .+...+..+-..|.. .+++++|..+|++-.+.+ .+...+..|-.
T Consensus 95 y~~g~g~~~d~~~A~~~~~~A~~~~~--~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~ 170 (212)
T 3rjv_A 95 LVNRQAGATDVAHAITLLQDAARDSE--SDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGM 170 (212)
T ss_dssp HTCGGGSSCCHHHHHHHHHHHTSSTT--SHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHH
T ss_pred HHcCCCCccCHHHHHHHHHHHHHcCC--CcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHH
Confidence 877 7899999999999887654 2 125677777777776 789999999999887762 23334444544
Q ss_pred Hh
Q 038114 159 AC 160 (170)
Q Consensus 159 ~~ 160 (170)
.|
T Consensus 171 ~y 172 (212)
T 3rjv_A 171 MF 172 (212)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.20 E-value=2.3e-05 Score=50.37 Aligned_cols=92 Identities=12% Similarity=-0.056 Sum_probs=79.7
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
+-..+.+.|++++|...|++. .... +-++..|..+-.++...|++++|...|+...+.. +-++..|..+-.+|.+.|
T Consensus 42 lg~~~~~~g~~~eA~~~~~~a-l~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg 118 (151)
T 3gyz_A 42 YAYDFYNKGRIEEAEVFFRFL-CIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLK 118 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 788899999999999999998 5443 2467788889999999999999999999998864 335778999999999999
Q ss_pred CHHHHHHHHhhcccC
Q 038114 93 SLEDARVVSDEMPQR 107 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~ 107 (170)
++++|...|+...+.
T Consensus 119 ~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 119 APLKAKECFELVIQH 133 (151)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998765
No 115
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.20 E-value=2.8e-05 Score=49.63 Aligned_cols=114 Identities=10% Similarity=-0.069 Sum_probs=88.3
Q ss_pred hHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 038114 11 FTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90 (170)
Q Consensus 11 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 90 (170)
|++-..|.+.|++++|++.|++. .... +-+...|..+-.++...|++++|...|+...+.. +-++..|..+-..|.+
T Consensus 35 ~~la~~y~~~~~~~~A~~~~~~a-l~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 35 FYFAKLYYEAKEYDLAKKYICTY-INVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 45788899999999999999998 5432 2356789999999999999999999999998864 3358899999999999
Q ss_pred CCCHHHHHHH-HhhcccCCCCCCCChhhHHHHHHHHhCCCC
Q 038114 91 CGSLEDARVV-SDEMPQRNVIESPDLASWNAIIAGVASPSN 130 (170)
Q Consensus 91 ~~~~~~a~~~-~~~m~~~~~~~~p~~~~~~~li~~~~~~g~ 130 (170)
.|++++|.+. ++...+... -+...|...-..+.+.|+
T Consensus 112 ~~~~~~aa~~~~~~al~l~P---~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 112 NDVTDGRAKYWVERAAKLFP---GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HCSSSSHHHHHHHHHHHHST---TCHHHHHHHHHHHHTCCC
T ss_pred cCChHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHHhCc
Confidence 9998876665 466554322 345667766666666653
No 116
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.19 E-value=1.6e-05 Score=55.11 Aligned_cols=132 Identities=8% Similarity=-0.020 Sum_probs=96.8
Q ss_pred hHHHhhhcccCCHHHHHHHHHHHHhhCCC-Cc-chhhHHHHHHHhhc--------ccchHHHHHHHHHHHhcCCCCCHHH
Q 038114 11 FTFYNSQPIQNLYNEALVAFDFLQNNTNF-RI-RPSTYACLISTCSS--------LRSLQLGRKVHDHILSSKSQPDVVL 80 (170)
Q Consensus 11 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~p-~~~~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~~~ 80 (170)
+.+-..+.+.|++++|+..|++. ..... .| ....+..+-.++.. .|++++|...|++..+.... +...
T Consensus 56 ~~lg~~~~~~~~~~~A~~~~~~~-l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~ 133 (261)
T 3qky_A 56 FYLARAYYQNKEYLLAASEYERF-IQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELV 133 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHH-HHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhH
Confidence 33788999999999999999998 54321 22 24456667777777 99999999999999875321 2223
Q ss_pred H-----------------HHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCC----------CChHH
Q 038114 81 Q-----------------NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP----------SNANE 133 (170)
Q Consensus 81 ~-----------------~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~----------g~~~~ 133 (170)
. -.+-..|.+.|++++|...|+...............+..+..+|... |++++
T Consensus 134 ~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~ 213 (261)
T 3qky_A 134 DDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRR 213 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHH
Confidence 3 45577889999999999999998765331012344666777777655 88999
Q ss_pred HHHHHHHHHhC
Q 038114 134 AMSLFSEMRDR 144 (170)
Q Consensus 134 a~~l~~~m~~~ 144 (170)
|...|++..+.
T Consensus 214 A~~~~~~~~~~ 224 (261)
T 3qky_A 214 AVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 117
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.18 E-value=4.2e-06 Score=56.38 Aligned_cols=90 Identities=16% Similarity=0.057 Sum_probs=63.9
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCc-chhhHHH----------------HHHHhhcccchHHHHHHHHHHHhcCCCC
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRI-RPSTYAC----------------LISTCSSLRSLQLGRKVHDHILSSKSQP 76 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~~~~~ 76 (170)
...+.+.|++++|...|++. ... .| +...+.. +-.++.+.|++++|...|++..+.. +-
T Consensus 11 g~~~~~~g~~~~A~~~~~~a-l~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 86 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQT-IAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PN 86 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-HHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHCCCHHHHHHHHHHH-HHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC
Confidence 45566778888888888877 432 23 2334444 6667778888888888888887753 33
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHhhcccC
Q 038114 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQR 107 (170)
Q Consensus 77 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 107 (170)
+...+..+-..|...|++++|...|++..+.
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5777888888888888888888888877654
No 118
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.18 E-value=1.9e-05 Score=57.89 Aligned_cols=155 Identities=10% Similarity=-0.038 Sum_probs=108.7
Q ss_pred HhH-HHhhhcccCCHHHHHHHHHHHHhhC----CCCc-chhhHHHHHHHhhcccchHHHHHHHHHHHhc----CCCCCHH
Q 038114 10 RFT-FYNSQPIQNLYNEALVAFDFLQNNT----NFRI-RPSTYACLISTCSSLRSLQLGRKVHDHILSS----KSQPDVV 79 (170)
Q Consensus 10 ~~~-li~~~~~~~~~~~a~~~~~~m~~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~ 79 (170)
.++ +-..|...|++++|...|++. ... +-.+ ...++..+-.++...|++++|...|.+..+. +.+....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAA-LELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 444 788899999999999999886 331 2211 2346777888888999999999999988761 2233477
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhcccCCC--CCCCChhhHHHHHHHHhCCCC---hHHHHHHHHHHHhCCCCCC-HhhH
Q 038114 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNV--IESPDLASWNAIIAGVASPSN---ANEAMSLFSEMRDRELIPD-GLTV 153 (170)
Q Consensus 80 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~p~~~~~~~li~~~~~~g~---~~~a~~l~~~m~~~~~~p~-~~t~ 153 (170)
++..+-..|.+.|++++|...+++...... ..+.....++.+-..+...++ ..+|+..+++ .+..|+ ...+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~ 339 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHH
Confidence 889999999999999999999997653211 002234456666677778888 7777777765 333333 3345
Q ss_pred HHHHHHhcCCCcccc
Q 038114 154 RSLLCACTSPSNVLY 168 (170)
Q Consensus 154 ~~ll~~~~~~g~~e~ 168 (170)
..+-..|.+.|+.++
T Consensus 340 ~~la~~y~~~g~~~~ 354 (378)
T 3q15_A 340 RSAAAVFESSCHFEQ 354 (378)
T ss_dssp HHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHCCCHHH
Confidence 667777777777654
No 119
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=0.0001 Score=45.92 Aligned_cols=97 Identities=12% Similarity=-0.028 Sum_probs=81.0
Q ss_pred chhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcc----hhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHH
Q 038114 7 TQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIR----PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQ 81 (170)
Q Consensus 7 ~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 81 (170)
+...+. +...+...|++++|...|++. ... .|+ ...+..+-.++...|++++|...+....+.. +.+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a-~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQA-LGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHH-HTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 344455 688899999999999999998 554 355 5678888888999999999999999998763 3357888
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcccC
Q 038114 82 NYILNMYGKCGSLEDARVVSDEMPQR 107 (170)
Q Consensus 82 ~~li~~~~~~~~~~~a~~~~~~m~~~ 107 (170)
..+-.+|.+.|++++|...|++....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999999988754
No 120
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.17 E-value=5.6e-06 Score=59.13 Aligned_cols=127 Identities=6% Similarity=-0.089 Sum_probs=58.4
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhC----CCCc-chhhHHHHHHHhhcccchHHHHHHHHHHHhc----CCCC-CHHHHHH
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNT----NFRI-RPSTYACLISTCSSLRSLQLGRKVHDHILSS----KSQP-DVVLQNY 83 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ 83 (170)
...|...|++++|...|.+. ... +-.+ -..+|+.+-..|...|++++|...|.+..+. |-.. -..+++.
T Consensus 43 ~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 121 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQE-AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR 121 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455556666665555544 211 1101 1224555555555555666665555554331 1110 1234555
Q ss_pred HHHHHHcCCCHHHHHHHHhhcccCCCCC-CC--ChhhHHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 84 ILNMYGKCGSLEDARVVSDEMPQRNVIE-SP--DLASWNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 84 li~~~~~~~~~~~a~~~~~~m~~~~~~~-~p--~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
+-..|.+ |++++|...|++........ .+ ...+++.+-..+.+.|++++|+..|++..
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555 66666555555433211000 00 12345555555555566666665555554
No 121
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.17 E-value=2.3e-05 Score=52.09 Aligned_cols=126 Identities=17% Similarity=0.016 Sum_probs=79.5
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCC-CCcc--------------hhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTN-FRIR--------------PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~-~~p~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 77 (170)
+-..+.+.|++++|...|++. .... -.|+ ...+..+-.++...|++++|...+....+.. +.+
T Consensus 44 ~g~~~~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~ 121 (198)
T 2fbn_A 44 EGNEFFKKNEINEAIVKYKEA-LDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNN 121 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccc
Confidence 566777888888888888887 4322 1121 2566677777778888888888888887753 345
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHH-HHHHHHHh
Q 038114 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM-SLFSEMRD 143 (170)
Q Consensus 78 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~-~l~~~m~~ 143 (170)
...+..+-.+|...|++++|.+.|+....... -+...+..+...+...++.+++. ..|..|..
T Consensus 122 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 122 VKALYKLGVANMYFGFLEEAKENLYKAASLNP---NNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777888888888888888888887665422 24455666666666656555555 44444443
No 122
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.16 E-value=5e-05 Score=55.59 Aligned_cols=153 Identities=9% Similarity=-0.154 Sum_probs=108.3
Q ss_pred HhH-HHhhhcccCCHHHHHHHHHHHHhhC-CCCc-----chhhHHHHHHHhhcccchHHHHHHHHHHHhc----CCCC-C
Q 038114 10 RFT-FYNSQPIQNLYNEALVAFDFLQNNT-NFRI-----RPSTYACLISTCSSLRSLQLGRKVHDHILSS----KSQP-D 77 (170)
Q Consensus 10 ~~~-li~~~~~~~~~~~a~~~~~~m~~~~-~~~p-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~ 77 (170)
.+. +-..|...|+++.|...+++. ... .-.+ ...++..+-.+|...|++++|...|.+..+. +-.+ .
T Consensus 145 ~~~~lg~~~~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (383)
T 3ulq_A 145 FFFKMSESYYYMKQTYFSMDYARQA-YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM 223 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-HHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 444 788889999999999999887 432 1111 2346777888889999999999999887753 2111 1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhhccc-----CCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCC----CCC
Q 038114 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQ-----RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE----LIP 148 (170)
Q Consensus 78 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~----~~p 148 (170)
..++..+-..|...|++++|.+.|++..+ ... +....++..+...+...|++++|...+++..... -..
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 301 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL--PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVI 301 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG--GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 35788889999999999999999987765 332 2235678888899999999999999998876431 111
Q ss_pred CHhhHHHHHHHhcCCCc
Q 038114 149 DGLTVRSLLCACTSPSN 165 (170)
Q Consensus 149 ~~~t~~~ll~~~~~~g~ 165 (170)
....+..+-..+...|+
T Consensus 302 ~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 302 YLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp HHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 22234555556666554
No 123
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.14 E-value=3.5e-05 Score=56.41 Aligned_cols=149 Identities=7% Similarity=-0.059 Sum_probs=108.3
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhC-----CCCc-chhhHHHHHHHhhcccchHHHHHHHHHHHhc----CCCC-CHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNT-----NFRI-RPSTYACLISTCSSLRSLQLGRKVHDHILSS----KSQP-DVVLQ 81 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~ 81 (170)
+-..|...|+++.|...+++. ... +..+ ...+++.+-.+|...|++++|...|.+..+. +-.+ ...++
T Consensus 147 lg~~y~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 225 (378)
T 3q15_A 147 VAEAYYHMKQTHVSMYHILQA-LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISL 225 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHH-HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 788889999999999999886 431 1122 2446778888899999999999999887652 2111 24578
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhccc-----CCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCC----CCCHhh
Q 038114 82 NYILNMYGKCGSLEDARVVSDEMPQ-----RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL----IPDGLT 152 (170)
Q Consensus 82 ~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~----~p~~~t 152 (170)
+.+-..|...|++++|.+.|++... ... ....++..+...+.+.|++++|...+++.....- ......
T Consensus 226 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 226 LNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD---LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG---GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh---hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888899999999999999998765 333 2367788888999999999999999998876421 222333
Q ss_pred HHHHHHHhcCCCc
Q 038114 153 VRSLLCACTSPSN 165 (170)
Q Consensus 153 ~~~ll~~~~~~g~ 165 (170)
+..+-..+...++
T Consensus 303 ~~~l~~ly~~~~~ 315 (378)
T 3q15_A 303 FLFLQAVYKETVD 315 (378)
T ss_dssp HHHHHHHHSSSCC
T ss_pred HHHHHHHHhCCCc
Confidence 4555555555544
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.14 E-value=3.7e-05 Score=54.36 Aligned_cols=127 Identities=9% Similarity=-0.019 Sum_probs=96.8
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCC-Ccc----hhhHHHHHHHhhcccchHHHHHHHHHHHh----c-CCCCC-HHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNF-RIR----PSTYACLISTCSSLRSLQLGRKVHDHILS----S-KSQPD-VVLQ 81 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~-~~~~~-~~~~ 81 (170)
+...+...|++++|+..|++. ..... .++ ..+++.+-.+|...|+++.|...|.+..+ . +..+. ..+|
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~a-l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 199 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKL-LNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHH-HHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHH-HHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence 566677788999999999998 65322 233 22688888999999999999999999884 1 22222 3488
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhccc----CCCCCCCC-hhhHHHHHHHHhCCCC-hHHHHHHHHHHH
Q 038114 82 NYILNMYGKCGSLEDARVVSDEMPQ----RNVIESPD-LASWNAIIAGVASPSN-ANEAMSLFSEMR 142 (170)
Q Consensus 82 ~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~p~-~~~~~~li~~~~~~g~-~~~a~~l~~~m~ 142 (170)
..+-..|.+.|++++|...+++..+ .+. .+. ..+|..+-..+...|+ +++|...+++..
T Consensus 200 ~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINS--MALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB--CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc--HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 8999999999999999999886643 222 222 5678888899999994 699999888765
No 125
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.13 E-value=3.5e-06 Score=51.36 Aligned_cols=105 Identities=7% Similarity=-0.091 Sum_probs=80.2
Q ss_pred cccchHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChH
Q 038114 55 SLRSLQLGRKVHDHILSSK--SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNAN 132 (170)
Q Consensus 55 ~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~ 132 (170)
..|++++|...|++..+.+ -+-+...+..+-..|.+.|++++|.+.|++..+... -+...+..+...+...|+++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP---NHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CchHHHHHHHHHHHHcCCHH
Confidence 4588999999999998864 133467889999999999999999999999886644 34678888899999999999
Q ss_pred HHHHHHHHHHhC-CCCCCHhhHHHHHHHhcC
Q 038114 133 EAMSLFSEMRDR-ELIPDGLTVRSLLCACTS 162 (170)
Q Consensus 133 ~a~~l~~~m~~~-~~~p~~~t~~~ll~~~~~ 162 (170)
+|...|++.... .-.|+...|...+..+.+
T Consensus 79 ~A~~~~~~al~~~p~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 79 QGVELLLKIIAETSDDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 999999987765 345556666666666654
No 126
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.13 E-value=3.7e-05 Score=46.81 Aligned_cols=106 Identities=11% Similarity=0.020 Sum_probs=83.4
Q ss_pred HhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCC--CCC----HHHHH
Q 038114 10 RFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKS--QPD----VVLQN 82 (170)
Q Consensus 10 ~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~ 82 (170)
.|. +...+...|++++|...|++. .... +.+...+..+-..+...|++++|...+....+... .++ ...+.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKA-KELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-HhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 444 788889999999999999998 5443 34667888888899999999999999999877531 222 77888
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHH
Q 038114 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121 (170)
Q Consensus 83 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l 121 (170)
.+...|.+.|++++|.+.|+..... .|+......+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~l 118 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE----HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CCCHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh----CCCHHHHHHH
Confidence 9999999999999999999988764 3444444433
No 127
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.12 E-value=1.3e-05 Score=53.00 Aligned_cols=134 Identities=11% Similarity=-0.007 Sum_probs=98.4
Q ss_pred hHhH-HHhhhcccCCHHHHHHHHHHHHhh----CCCCc-chhhHHHHHHHhhcccchHHHHHHHHHHHhc----CCCC--
Q 038114 9 LRFT-FYNSQPIQNLYNEALVAFDFLQNN----TNFRI-RPSTYACLISTCSSLRSLQLGRKVHDHILSS----KSQP-- 76 (170)
Q Consensus 9 ~~~~-li~~~~~~~~~~~a~~~~~~m~~~----~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-- 76 (170)
..+. +-..+...|++++|...+++. .. .+..| ....+..+-..+...|++++|...+.+..+. +-.+
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQAL-QQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHH-HHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 3444 678888999999999999887 43 22222 3446777788889999999999999987653 2122
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHhhcccC----CCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 038114 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQR----NVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 77 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
....+..+-..+...|++++|.+.+++.... +.. ..-..++..+-..+...|++++|...+++..+.
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQ-VAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 2456888888999999999999999876532 110 111334677788899999999999999877643
No 128
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.11 E-value=4.6e-06 Score=63.45 Aligned_cols=121 Identities=7% Similarity=-0.110 Sum_probs=93.4
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
+-..+.+.|++++|.+.|++. .+.. +-+...|..+-.++.+.|++++|...+++..+.. +-+...|..+-.+|.+.|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~A-l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQA-IELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHH-HHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 567788999999999999998 5432 2357788999999999999999999999999874 345889999999999999
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhhHHHHHHH--HhCCCChHHHHHHHH
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAG--VASPSNANEAMSLFS 139 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~l~~ 139 (170)
++++|.+.|++..+... -+...+..+-.+ +.+.|++++|..+++
T Consensus 89 ~~~eA~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKP---HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHST---TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999998876533 122345555444 777899999999987
No 129
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.10 E-value=5.2e-05 Score=48.30 Aligned_cols=92 Identities=11% Similarity=-0.009 Sum_probs=78.3
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
+-..+.+.|++++|...|++. .... +.+...|..+-.++...|++++|...|+...+.. +.++..+..+-.+|...|
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~a-l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g 103 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQAL-CVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQXG 103 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCChHHHHHHHHHH-HHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 788899999999999999998 5433 2466778888889999999999999999998764 335778888999999999
Q ss_pred CHHHHHHHHhhcccC
Q 038114 93 SLEDARVVSDEMPQR 107 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~ 107 (170)
++++|.+.|+...+.
T Consensus 104 ~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 104 ELAEAESGLFLAQEL 118 (148)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987654
No 130
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.10 E-value=8.3e-05 Score=47.82 Aligned_cols=100 Identities=8% Similarity=0.027 Sum_probs=86.5
Q ss_pred cchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHH
Q 038114 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNA 120 (170)
Q Consensus 41 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ 120 (170)
.+...+..+-..+.+.|++++|...|.+..+.. +-+...|..+-.+|.+.|++++|...|+....... -+...|..
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~ 84 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP---KYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCHHHHHH
Confidence 355678888888999999999999999998864 33688999999999999999999999998876543 35678999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHhC
Q 038114 121 IIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 121 li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
+-..+...|++++|...|++..+.
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999988765
No 131
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.10 E-value=9.1e-05 Score=49.74 Aligned_cols=137 Identities=7% Similarity=-0.031 Sum_probs=97.7
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
+-..+.+.|++++|+..|++. .... +-+...+..+-.++...|++++|...|++..+.. +-+...|..+-..|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~a-l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKEL-LQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH-HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 778889999999999999998 5433 2356788889999999999999999999998864 335788888888876655
Q ss_pred C--HHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038114 93 S--LEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLC 158 (170)
Q Consensus 93 ~--~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~ 158 (170)
. .+.+...|..... . .|....+...-.++...|++++|...|++..+ +.|+......+.+
T Consensus 137 ~~~~~~~~~~~~~~~~--~--~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--P--TKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHC---C--C--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--C--CchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 3 4556666666532 1 23222333334455567899999999997764 5677665555443
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.09 E-value=1.6e-05 Score=57.64 Aligned_cols=122 Identities=7% Similarity=-0.118 Sum_probs=96.6
Q ss_pred chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHcCCCHHHHHHHHhhcccC
Q 038114 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD--------------VVLQNYILNMYGKCGSLEDARVVSDEMPQR 107 (170)
Q Consensus 42 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 107 (170)
+...+..+-..+.+.|++++|...|.+..+...... ...|..+-.+|.+.|++++|...|+...+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677788888999999999999999988643322 589999999999999999999999998765
Q ss_pred CCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccc
Q 038114 108 NVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 108 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e 167 (170)
.. .+...|..+-.+|...|++++|...|++..+.. .-+...+..+-.++.+.|+.+
T Consensus 226 ~p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 226 DS---NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp CT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHH
T ss_pred CC---CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Confidence 43 467889999999999999999999999887653 124456666666666555544
No 133
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.09 E-value=6e-05 Score=47.41 Aligned_cols=92 Identities=11% Similarity=-0.071 Sum_probs=78.0
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG 92 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 92 (170)
+-..+.+.|++++|...|++. .... +.+...|..+-.++...|++++|...|+...+.. +.++..+..+-.+|...|
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~a-l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQAL-CMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccHHHHHHHHHHH-HHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 678889999999999999998 5433 2466678888888999999999999999998864 345778888999999999
Q ss_pred CHHHHHHHHhhcccC
Q 038114 93 SLEDARVVSDEMPQR 107 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~ 107 (170)
++++|.+.|+.....
T Consensus 101 ~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 101 DLDGAESGFYSARAL 115 (142)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987654
No 134
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.08 E-value=9.8e-05 Score=45.62 Aligned_cols=98 Identities=10% Similarity=-0.011 Sum_probs=81.7
Q ss_pred chhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038114 7 TQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85 (170)
Q Consensus 7 ~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 85 (170)
+...|. +-..+...|++++|...|++. .... +.+...+..+-.++...|++++|...+....+.. +.+...+..+-
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRA-ITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHH-HhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 344455 788999999999999999998 5443 2356788888999999999999999999998864 33688999999
Q ss_pred HHHHcCCCHHHHHHHHhhcccC
Q 038114 86 NMYGKCGSLEDARVVSDEMPQR 107 (170)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~ 107 (170)
.+|...|++++|...|+.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999987643
No 135
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.07 E-value=7.6e-05 Score=46.17 Aligned_cols=97 Identities=7% Similarity=0.031 Sum_probs=51.4
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCC----hhhHHHH
Q 038114 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPD----LASWNAI 121 (170)
Q Consensus 46 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~----~~~~~~l 121 (170)
+.-+=..+.+.|++++|...|.+..+.. +-+...|+.+-.+|.+.|++++|.+.|++..+.+....++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344445555566666666666655542 2235566666666666666666666666544321100111 1244455
Q ss_pred HHHHhCCCChHHHHHHHHHHHh
Q 038114 122 IAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 122 i~~~~~~g~~~~a~~l~~~m~~ 143 (170)
-..+...|++++|++.|++-..
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5556666666666666665543
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.07 E-value=0.0001 Score=45.12 Aligned_cols=95 Identities=8% Similarity=-0.079 Sum_probs=80.4
Q ss_pred HhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038114 10 RFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY 88 (170)
Q Consensus 10 ~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 88 (170)
.|. +-..+.+.|++++|+..|++. .... +.+...|..+-.++.+.|++++|...+....+.. +.+...|..+-.++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEM-IKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-HHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 444 678889999999999999998 5433 2366788899999999999999999999998864 33588999999999
Q ss_pred HcCCCHHHHHHHHhhcccC
Q 038114 89 GKCGSLEDARVVSDEMPQR 107 (170)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~ 107 (170)
...|++++|...|++....
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 9999999999999987654
No 137
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.07 E-value=2.6e-06 Score=62.72 Aligned_cols=152 Identities=9% Similarity=-0.020 Sum_probs=88.5
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcch----hhHHHHHHHhhcccchHHHHHHHHHHHhc----CC-CCCHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRP----STYACLISTCSSLRSLQLGRKVHDHILSS----KS-QPDVVLQNY 83 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~ 83 (170)
+-..+...|++++|+..|++. ...... +. ..+..+-..+...|++++|...+.+..+. +- ......+..
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~a-l~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAA-IQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHH-HHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 456667778888888888777 443211 22 35666777777778888888877776542 11 222456677
Q ss_pred HHHHHHcCCCHHHHHHHHhhcccC----CCCCCCChhhHHHHHHHHhCCCC-----------------hHHHHHHHHHHH
Q 038114 84 ILNMYGKCGSLEDARVVSDEMPQR----NVIESPDLASWNAIIAGVASPSN-----------------ANEAMSLFSEMR 142 (170)
Q Consensus 84 li~~~~~~~~~~~a~~~~~~m~~~----~~~~~p~~~~~~~li~~~~~~g~-----------------~~~a~~l~~~m~ 142 (170)
+-..|...|++++|...|++.... +-. .....++..+...|...|+ +++|...+.+..
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDR-LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 777777777877777777765432 100 1223456666666666677 667766666543
Q ss_pred hC----CCCC-CHhhHHHHHHHhcCCCccc
Q 038114 143 DR----ELIP-DGLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 143 ~~----~~~p-~~~t~~~ll~~~~~~g~~e 167 (170)
.. +-.| ...++..+-..+...|+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 240 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQ 240 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChH
Confidence 31 1111 1234555555555555544
No 138
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.07 E-value=3e-06 Score=62.38 Aligned_cols=155 Identities=10% Similarity=-0.051 Sum_probs=103.6
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhC----C-CCcchhhHHHHHHHhhcccc-----------------hHHHHHHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNT----N-FRIRPSTYACLISTCSSLRS-----------------LQLGRKVHDHIL 70 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~----~-~~p~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~m~ 70 (170)
+-..|...|++++|...|++. ... + ......++..+-..+...|+ ++.|...+.+..
T Consensus 132 l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERH-LTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH-HHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 677788889999998888876 322 1 11233467777777888888 888888887765
Q ss_pred hc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCC---CCCChhhHHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 71 SS----KSQP-DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI---ESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 71 ~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
+. +-.+ ....+..+-..|...|++++|.+.|++....... ......++..+...+...|++++|...+++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 42 2112 2457778888888889999998888876532110 01112367788888888899999988888775
Q ss_pred hCCC-----CCCHhhHHHHHHHhcCCCcccc
Q 038114 143 DREL-----IPDGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 143 ~~~~-----~p~~~t~~~ll~~~~~~g~~e~ 168 (170)
...- .....++..+-..+...|+.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNT 321 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4321 1124566777777777777654
No 139
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.06 E-value=1.4e-05 Score=50.46 Aligned_cols=129 Identities=12% Similarity=-0.011 Sum_probs=95.4
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCC-Ccc----hhhHHHHHHHhhcccchHHHHHHHHHHHhc----CCCC-CHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNF-RIR----PSTYACLISTCSSLRSLQLGRKVHDHILSS----KSQP-DVVLQN 82 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~ 82 (170)
+-..+...|++++|...+++. ..... .++ ..++..+-..+...|++++|...+.+..+. +-.+ ....+.
T Consensus 15 l~~~~~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 93 (164)
T 3ro3_A 15 LGNTHYLLGNFRDAVIAHEQR-LLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 93 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHH-HHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 677888999999999999887 43211 111 136777888888999999999999987653 2111 145778
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcccC----CCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHh
Q 038114 83 YILNMYGKCGSLEDARVVSDEMPQR----NVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 83 ~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 143 (170)
.+-..+...|++++|.+.+++.... +.. ......+..+...+...|++++|...+++..+
T Consensus 94 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 94 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR-IGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHccch-HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888899999999999999876532 110 12245677788889999999999999987654
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.05 E-value=7.3e-05 Score=52.93 Aligned_cols=137 Identities=10% Similarity=-0.062 Sum_probs=100.1
Q ss_pred HHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHH
Q 038114 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD--VVLQNYILNMYG 89 (170)
Q Consensus 12 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~ 89 (170)
.+...+...|++++|.++|+.+ ...+ |+....-.+-..+.+.+++++|+..|....+.. .|. ...+..+=.++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~-~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAA-PVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSS-CCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH-HhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 3577889999999999999998 6544 544344444557888999999999998554322 121 236777788899
Q ss_pred cCCCHHHHHHHHhhcccCCCCCCCC--hhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 038114 90 KCGSLEDARVVSDEMPQRNVIESPD--LASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156 (170)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~l 156 (170)
+.|++++|++.|++...... .|. .......-.++.+.|+.++|..+|+++... .|+...+..|
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~--~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPA--GEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTT--TTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCC--CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 99999999999998875433 354 335566667788889999999999999875 3444444444
No 141
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.04 E-value=3.3e-05 Score=54.66 Aligned_cols=125 Identities=8% Similarity=-0.021 Sum_probs=97.4
Q ss_pred HHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHH-HHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 038114 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACL-ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90 (170)
Q Consensus 12 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 90 (170)
++...+.+.|++++|...+++. ... .|+....... ...+...++.+.+...+.+..+.. +.+...+..+-..|..
T Consensus 156 ~la~~~~~~g~~~~A~~~l~~~-~~~--~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 156 LLAETLIALNRSEDAEAVLXTI-PLQ--DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQ 231 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTS-CGG--GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhC-chh--hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHH
Confidence 3788999999999999999998 443 3444432222 223566777888889998888764 4468899999999999
Q ss_pred CCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHH
Q 038114 91 CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141 (170)
Q Consensus 91 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 141 (170)
.|++++|.+.|.+..+.... ..+...+..+...+...|+.+.|...+++-
T Consensus 232 ~g~~~~A~~~l~~~l~~~p~-~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 232 VGRNEEALELLFGHLRXDLT-AADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-GGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcccc-cccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 99999999999998876441 123578999999999999999998888754
No 142
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.02 E-value=0.00011 Score=49.80 Aligned_cols=134 Identities=7% Similarity=-0.096 Sum_probs=93.2
Q ss_pred HhHHHhhhcccCCHHHHHHHHHHHHhhCCC-Ccch-hhHHHHHHHhh------------------cccchHHHHHHHHHH
Q 038114 10 RFTFYNSQPIQNLYNEALVAFDFLQNNTNF-RIRP-STYACLISTCS------------------SLRSLQLGRKVHDHI 69 (170)
Q Consensus 10 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~-~~~~~li~~~~------------------~~~~~~~a~~~~~~m 69 (170)
.+.+..++.+.|++++|+..|++. ..... .+.. ..+-.+-.++. ..|++++|...|+.+
T Consensus 44 ~~~lg~~~~~~~~~~~A~~~~~~~-l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 122 (225)
T 2yhc_A 44 QLDLIYAYYKNADLPLAQAAIDRF-IRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKL 122 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH-HHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHH
Confidence 344788999999999999999998 54322 2221 12322222332 368899999999999
Q ss_pred HhcCCCCCHHHH-----------------HHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChH
Q 038114 70 LSSKSQPDVVLQ-----------------NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNAN 132 (170)
Q Consensus 70 ~~~~~~~~~~~~-----------------~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~ 132 (170)
.+.-. -+...+ -.+-..|.+.|++++|...|+.+.+...........+..+..++.+.|+++
T Consensus 123 l~~~P-~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 123 VRGYP-NSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp HTTCT-TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHCc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcH
Confidence 87521 122222 234456888999999999999988653310111356888889999999999
Q ss_pred HHHHHHHHHHhCC
Q 038114 133 EAMSLFSEMRDRE 145 (170)
Q Consensus 133 ~a~~l~~~m~~~~ 145 (170)
+|...++.+...+
T Consensus 202 ~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 202 QAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhC
Confidence 9999999888764
No 143
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.02 E-value=7.3e-06 Score=59.86 Aligned_cols=155 Identities=11% Similarity=-0.022 Sum_probs=102.5
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhC-CCCcc----hhhHHHHHHHhhcccc--------------------hHHHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNT-NFRIR----PSTYACLISTCSSLRS--------------------LQLGRKVHD 67 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~-~~~p~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~ 67 (170)
+...+...|++++|...+++. ... .-.++ ..++..+-..+...|+ ++.|...+.
T Consensus 93 la~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 171 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRH-LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYE 171 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 677788888999888888776 321 11111 3367777777888888 888888887
Q ss_pred HHHhc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCC---CCCChhhHHHHHHHHhCCCChHHHHHHHH
Q 038114 68 HILSS----KSQP-DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI---ESPDLASWNAIIAGVASPSNANEAMSLFS 139 (170)
Q Consensus 68 ~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~l~~ 139 (170)
+..+. +..+ ...++..+-..|...|++++|.+.|++....... ......+|..+...+...|++++|...++
T Consensus 172 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (406)
T 3sf4_A 172 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 76542 2122 2457778888888889999988888876532110 01113367778888888899999988888
Q ss_pred HHHhC----CCCC-CHhhHHHHHHHhcCCCcccc
Q 038114 140 EMRDR----ELIP-DGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 140 ~m~~~----~~~p-~~~t~~~ll~~~~~~g~~e~ 168 (170)
+.... +-.+ ...++..+-..+...|++++
T Consensus 252 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 285 (406)
T 3sf4_A 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK 285 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHH
Confidence 77543 1111 14566777777777777654
No 144
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.02 E-value=0.00016 Score=50.93 Aligned_cols=95 Identities=11% Similarity=-0.011 Sum_probs=74.9
Q ss_pred HhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038114 10 RFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY 88 (170)
Q Consensus 10 ~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 88 (170)
.+. +-..+.+.|++++|...|++. .... +-+...|..+-.++.+.|++++|...+....+.. +-+...+..+-.+|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~a-l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRA-ITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-HHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344 677888899999999999887 4432 2266678888888889999999999999887753 33577888888899
Q ss_pred HcCCCHHHHHHHHhhcccC
Q 038114 89 GKCGSLEDARVVSDEMPQR 107 (170)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~ 107 (170)
.+.|++++|...|+...+.
T Consensus 83 ~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999876643
No 145
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.01 E-value=4.3e-05 Score=46.95 Aligned_cols=89 Identities=11% Similarity=-0.011 Sum_probs=44.7
Q ss_pred HHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCC
Q 038114 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPS 129 (170)
Q Consensus 50 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g 129 (170)
-..+.+.|++++|...|+...+.. +-+...|..+-.++.+.|++++|...|+...+... -+...+..+...+...|
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P---~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP---KDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcC
Confidence 334445555555555555555432 22344555555555555555555555555443322 12344455555555555
Q ss_pred ChHHHHHHHHHHH
Q 038114 130 NANEAMSLFSEMR 142 (170)
Q Consensus 130 ~~~~a~~l~~~m~ 142 (170)
++++|...+++..
T Consensus 100 ~~~~A~~~~~~al 112 (121)
T 1hxi_A 100 NANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555555444
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.00 E-value=8.9e-05 Score=49.20 Aligned_cols=144 Identities=6% Similarity=-0.100 Sum_probs=94.5
Q ss_pred hhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCC-CC--------------HHH
Q 038114 16 SQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQ-PD--------------VVL 80 (170)
Q Consensus 16 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~--------------~~~ 80 (170)
.....|.++.+.+.|+.- ... ..-....+..+-..+...|++++|...|.+..+.... |+ ...
T Consensus 13 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYT-DEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ---------CCCSGGGCC-HHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCC-HHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 334445555555555432 111 0112335666677788899999999999999874221 11 378
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHh
Q 038114 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160 (170)
Q Consensus 81 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~ 160 (170)
|..+-.+|.+.|++++|...|+....... .+...|..+-..+...|++++|...|++..+.. .-+...+..+-.++
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDK---NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 88899999999999999999998876533 466788888999999999999999999887653 11344455555544
Q ss_pred cCCCc
Q 038114 161 TSPSN 165 (170)
Q Consensus 161 ~~~g~ 165 (170)
...++
T Consensus 167 ~~~~~ 171 (198)
T 2fbn_A 167 NKLKE 171 (198)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 147
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.97 E-value=8.7e-06 Score=57.59 Aligned_cols=155 Identities=11% Similarity=-0.021 Sum_probs=101.4
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhC-CCCcc----hhhHHHHHHHhhcccc--------------------hHHHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNT-NFRIR----PSTYACLISTCSSLRS--------------------LQLGRKVHD 67 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~-~~~p~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~ 67 (170)
+...+...|++++|...+++. ... .-.++ ..++..+-..+...|+ ++.|...+.
T Consensus 89 l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRH-LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH-HHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 677788888999998888776 321 11112 3367777777888888 888888887
Q ss_pred HHHhc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCC---CCCChhhHHHHHHHHhCCCChHHHHHHHH
Q 038114 68 HILSS----KSQP-DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI---ESPDLASWNAIIAGVASPSNANEAMSLFS 139 (170)
Q Consensus 68 ~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~l~~ 139 (170)
+..+. +..+ ....+..+...|...|++++|.+.+++....... ......++..+...+...|++++|...++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76542 2112 2457777888888889999998888876432110 01113367777888888899999988888
Q ss_pred HHHhCC----CCC-CHhhHHHHHHHhcCCCcccc
Q 038114 140 EMRDRE----LIP-DGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 140 ~m~~~~----~~p-~~~t~~~ll~~~~~~g~~e~ 168 (170)
+..... -.+ ...++..+-..+...|++++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK 281 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHH
Confidence 775431 111 14456667777777776654
No 148
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.95 E-value=0.00018 Score=43.90 Aligned_cols=93 Identities=12% Similarity=-0.040 Sum_probs=50.1
Q ss_pred HHHhhhcccCCHHHHHHHHHHHHhhCCCCcch---hhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCC--HHHHHHHHH
Q 038114 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRP---STYACLISTCSSLRSLQLGRKVHDHILSSKSQPD--VVLQNYILN 86 (170)
Q Consensus 12 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~ 86 (170)
.+-..+.+.|++++|...|+.. ..... .+. ..+..+-.++...|++++|...|....+...... ...+..+-.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~-~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSF-LELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-HHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-HHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3455556666666666666665 33211 111 2444555555666666666666666655421110 444555555
Q ss_pred HHHcCCCHHHHHHHHhhccc
Q 038114 87 MYGKCGSLEDARVVSDEMPQ 106 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~ 106 (170)
+|.+.|++++|...|+....
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666665554
No 149
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.93 E-value=3.5e-05 Score=56.17 Aligned_cols=156 Identities=11% Similarity=-0.066 Sum_probs=110.2
Q ss_pred HhH-HHhhhcccCCHHHHHHHHHHHHhhC-CCCcc----hhhHHHHHHHhhcccchHHHHHHHHHHHhc----CCCCC-H
Q 038114 10 RFT-FYNSQPIQNLYNEALVAFDFLQNNT-NFRIR----PSTYACLISTCSSLRSLQLGRKVHDHILSS----KSQPD-V 78 (170)
Q Consensus 10 ~~~-li~~~~~~~~~~~a~~~~~~m~~~~-~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~ 78 (170)
.+. +...+...|++++|...+++. ... .-.++ ..++..+-..+...|++++|...+.+..+. +..+. .
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQR-LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH-HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 344 688889999999999999887 422 11122 237788888899999999999999988653 21111 5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHhhcccCCCC---CCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC----CCC-CCH
Q 038114 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVI---ESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR----ELI-PDG 150 (170)
Q Consensus 79 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~-p~~ 150 (170)
.++..+-..|.+.|++++|.+.|++....... ......++..+...|...|++++|...+++..+. +-. ...
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 68888999999999999999999976542110 0111457888889999999999999999987543 211 224
Q ss_pred hhHHHHHHHhcCCCcc
Q 038114 151 LTVRSLLCACTSPSNV 166 (170)
Q Consensus 151 ~t~~~ll~~~~~~g~~ 166 (170)
.++..+-..+...|+.
T Consensus 348 ~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHh
Confidence 4566666666555544
No 150
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.93 E-value=0.00019 Score=43.79 Aligned_cols=97 Identities=7% Similarity=-0.033 Sum_probs=75.6
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCC-hhhHHHHH
Q 038114 47 ACLISTCSSLRSLQLGRKVHDHILSSKSQPDV---VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPD-LASWNAII 122 (170)
Q Consensus 47 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~~~~~li 122 (170)
..+-..+...|++++|...|....+.... +. ..+..+-.+|.+.|++++|...|+........ .+. ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 34455677889999999999999875322 23 57778888999999999999999998765331 111 45677788
Q ss_pred HHHhCCCChHHHHHHHHHHHhCC
Q 038114 123 AGVASPSNANEAMSLFSEMRDRE 145 (170)
Q Consensus 123 ~~~~~~g~~~~a~~l~~~m~~~~ 145 (170)
..+...|++++|...|++..+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 88999999999999999988653
No 151
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.92 E-value=0.00032 Score=50.97 Aligned_cols=153 Identities=10% Similarity=-0.042 Sum_probs=103.2
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCC--c--chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCC--CCHHHHH----
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFR--I--RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQ--PDVVLQN---- 82 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~--p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~---- 82 (170)
+-..+...|++++|...+++. ...... + ...++..+-..+...|++++|...+++..+..-. .......
T Consensus 141 la~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 219 (373)
T 1hz4_A 141 RAQLLWAWARLDEAEASARSG-IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 219 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHH-HHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 667788999999999999987 432211 1 2345777778888999999999999988753111 1122111
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcccCCCCCCCC---hhhHHHHHHHHhCCCChHHHHHHHHHHHhC----CCCCCHh-hHH
Q 038114 83 YILNMYGKCGSLEDARVVSDEMPQRNVIESPD---LASWNAIIAGVASPSNANEAMSLFSEMRDR----ELIPDGL-TVR 154 (170)
Q Consensus 83 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~p~~~-t~~ 154 (170)
.....+...|++++|...+++...... .+. ...+..+...+...|++++|...+++.... |..++.. .+.
T Consensus 220 ~~~~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 297 (373)
T 1hz4_A 220 VRVIYWQMTGDKAAAANWLRHTAKPEF--ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 297 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCC--TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCC--CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 233457799999999999998876433 221 234667778899999999999999887543 3222332 455
Q ss_pred HHHHHhcCCCcccc
Q 038114 155 SLLCACTSPSNVLY 168 (170)
Q Consensus 155 ~ll~~~~~~g~~e~ 168 (170)
.+-.++...|+.++
T Consensus 298 ~la~~~~~~g~~~~ 311 (373)
T 1hz4_A 298 LLNQLYWQAGRKSD 311 (373)
T ss_dssp HHHHHHHHHTCHHH
T ss_pred HHHHHHHHhCCHHH
Confidence 55555666665543
No 152
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.92 E-value=7e-05 Score=53.39 Aligned_cols=131 Identities=8% Similarity=-0.101 Sum_probs=95.3
Q ss_pred HhH-HHhhhcccCCHHHHHHHHHHHHhh----CCCCc-chhhHHHHHHHhhcccchHHHHHHHHHHHhc----CCCC-CH
Q 038114 10 RFT-FYNSQPIQNLYNEALVAFDFLQNN----TNFRI-RPSTYACLISTCSSLRSLQLGRKVHDHILSS----KSQP-DV 78 (170)
Q Consensus 10 ~~~-li~~~~~~~~~~~a~~~~~~m~~~----~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~ 78 (170)
.|+ +...|.+.|++++|+..|++. .. .|-.. -..++..+-..|.. |++++|...|.+..+. |-.. ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~A-l~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKA-SVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHH-HHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 455 778888999999999999886 32 22211 23467778888888 9999999999987653 2111 14
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHhhcccCCCC--CCCC-hhhHHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVI--ESPD-LASWNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 79 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
.+++.+-..|.+.|++++|...|++....... ..+. ...+..+...+...|++++|...|++..
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 67888999999999999999999987642110 0121 2256666777778899999999999887
No 153
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.91 E-value=0.00033 Score=49.44 Aligned_cols=128 Identities=9% Similarity=0.008 Sum_probs=95.3
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCC---Ccc--hhhHHHHHHHhhcccchHHHHHHHHHHHh---c-CCCC--CHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNF---RIR--PSTYACLISTCSSLRSLQLGRKVHDHILS---S-KSQP--DVVLQ 81 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~---~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~-~~~~--~~~~~ 81 (170)
+...+...|++++|+..+++. ..... .+. ..+|+.+-..|...|++++|...|.+..+ . +-.+ ...++
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~ 199 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKL-LNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHH-HTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHH-HHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHH
Confidence 456677889999999999987 53221 111 34788888999999999999999998873 2 2122 22688
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcccC----CCCCCCChhhHHHHHHHHhCCCChHHH-HHHHHHHH
Q 038114 82 NYILNMYGKCGSLEDARVVSDEMPQR----NVIESPDLASWNAIIAGVASPSNANEA-MSLFSEMR 142 (170)
Q Consensus 82 ~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~p~~~~~~~li~~~~~~g~~~~a-~~l~~~m~ 142 (170)
+.+-..|.+.|++++|...|++.... +.. ..-..+|..+-..|...|+.++| ...+++-.
T Consensus 200 ~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~-~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSM-ALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC-SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 99999999999999999999876432 210 11256788888999999999999 77676543
No 154
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.91 E-value=8.7e-05 Score=45.52 Aligned_cols=93 Identities=13% Similarity=-0.047 Sum_probs=77.5
Q ss_pred HHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 038114 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91 (170)
Q Consensus 12 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 91 (170)
.+-..+.+.|++++|+..|++. .... +-+...+..+-.++...|++++|...|+...+.. +-+...+..+-.+|.+.
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~a-l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAV-CQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH-HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3667888999999999999998 5432 2366678888888999999999999999998864 33577899999999999
Q ss_pred CCHHHHHHHHhhcccC
Q 038114 92 GSLEDARVVSDEMPQR 107 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~ 107 (170)
|++++|...|+...+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987654
No 155
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.90 E-value=2.7e-05 Score=54.98 Aligned_cols=131 Identities=11% Similarity=0.005 Sum_probs=89.3
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhC----CC-CcchhhHHHHHHHhhcccchHHHHHHHHHHHhc----CCCC-CHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNT----NF-RIRPSTYACLISTCSSLRSLQLGRKVHDHILSS----KSQP-DVVLQN 82 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~----~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~ 82 (170)
+...+...|++++|...+++. ... +. .....++..+...+...|++++|...+.+..+. +..+ ...++.
T Consensus 189 l~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 267 (338)
T 3ro2_A 189 LGNTHYLLGNFRDAVIAHEQR-LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 267 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH-HHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 677778888899888888876 321 11 111236777777788888888888888877642 1111 155777
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcccCCCC---CCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 038114 83 YILNMYGKCGSLEDARVVSDEMPQRNVI---ESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 83 ~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
.+-..|...|++++|...+++....... ......++..+...+...|++++|...+++..+.
T Consensus 268 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 268 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 7888888889998888888876432110 0112346777788888888999998888877654
No 156
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.90 E-value=0.00015 Score=54.74 Aligned_cols=128 Identities=12% Similarity=-0.031 Sum_probs=98.5
Q ss_pred HhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcc--------------hhhHHHHHHHhhcccchHHHHHHHHHHHhcCC
Q 038114 10 RFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIR--------------PSTYACLISTCSSLRSLQLGRKVHDHILSSKS 74 (170)
Q Consensus 10 ~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 74 (170)
.|. +-..+.+.|++++|+..|++. ........ ...|..+-.++.+.|++++|...+....+..
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~A-l~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKI-VSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-HHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH-HHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 344 678889999999999999988 44321111 4678888889999999999999999998864
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHH-HHHHHH
Q 038114 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS-LFSEMR 142 (170)
Q Consensus 75 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~-l~~~m~ 142 (170)
+.+...|..+-.+|.+.|++++|...|+...+... -+...+..+...+.+.++.+++.. ++..|.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P---~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP---QNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999876533 345678888888888888877764 455553
No 157
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.88 E-value=9e-05 Score=56.35 Aligned_cols=115 Identities=5% Similarity=-0.086 Sum_probs=87.1
Q ss_pred HHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCC
Q 038114 51 STCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN 130 (170)
Q Consensus 51 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~ 130 (170)
..+.+.|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++|.+.|++..+... -+...|..+-..|...|+
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p---~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK---KYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT---TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCC
Confidence 34567899999999999998863 33588999999999999999999999999887643 456788899999999999
Q ss_pred hHHHHHHHHHHHhCC-CCCCHhhHHHHHHHhcCCCccccC
Q 038114 131 ANEAMSLFSEMRDRE-LIPDGLTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 131 ~~~a~~l~~~m~~~~-~~p~~~t~~~ll~~~~~~g~~e~~ 169 (170)
+++|...|++..+.. -.++.......+..+.+.|+++++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A 129 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERA 129 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887653 222322222223225555555543
No 158
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.88 E-value=0.0003 Score=59.65 Aligned_cols=141 Identities=6% Similarity=0.028 Sum_probs=83.6
Q ss_pred chhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038114 7 TQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85 (170)
Q Consensus 7 ~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 85 (170)
+...|. ++..|.+.|++++|.+.+... +... +++...+.+..+|++.+++++...+. + .++...|..+-
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mA-rk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMA-RKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVG 1202 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHH-Hhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHH
Confidence 344555 899999999999999999887 5443 33333334777777777766433332 1 23444455555
Q ss_pred HHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC---------------------
Q 038114 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR--------------------- 144 (170)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--------------------- 144 (170)
..|...|++++|...|... ..|..+...+++.|++++|.+.+++-...
T Consensus 1203 d~le~eg~YeeA~~~Y~kA-----------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~ 1271 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQM 1271 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh-----------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHH
Confidence 5566666666666666652 24555555555555555555555433110
Q ss_pred ---CCCCCHhhHHHHHHHhcCCCcccc
Q 038114 145 ---ELIPDGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 145 ---~~~p~~~t~~~ll~~~~~~g~~e~ 168 (170)
++..+...+..++..|.+.|.+++
T Consensus 1272 cgl~Iiv~~deLeeli~yYe~~G~feE 1298 (1630)
T 1xi4_A 1272 CGLHIVVHADELEELINYYQDRGYFEE 1298 (1630)
T ss_pred HHHhhhcCHHHHHHHHHHHHHcCCHHH
Confidence 123345556677777777777755
No 159
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.85 E-value=0.00012 Score=56.00 Aligned_cols=129 Identities=8% Similarity=-0.024 Sum_probs=94.9
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhC-----C-CCc-chhhHHHHHHHhhcccchHHHHHHHHHHHhc-----C-CCCC-HH
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNT-----N-FRI-RPSTYACLISTCSSLRSLQLGRKVHDHILSS-----K-SQPD-VV 79 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~-----~-~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~-~~ 79 (170)
+..+...|++++|..++++. ... | -.| ...+++.|..+|...|++++|..++.+..+- | -.|+ ..
T Consensus 316 a~~~~~qg~~~eA~~l~~~a-L~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCREC-LEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHH-HHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 34566889999999999776 321 1 122 2347899999999999999999999987642 2 2344 56
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhcc-----cCCCCCCCC-hhhHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 038114 80 LQNYILNMYGKCGSLEDARVVSDEMP-----QRNVIESPD-LASWNAIIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 80 ~~~~li~~~~~~~~~~~a~~~~~~m~-----~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
+++.|-..|...|++++|+.++++.. ..|.. -|+ ..+.+.+-.++...+.+++|+.++..+++.
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS-HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999988653 23432 233 334455567777788899999999999763
No 160
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.85 E-value=0.00044 Score=44.77 Aligned_cols=100 Identities=13% Similarity=0.065 Sum_probs=80.2
Q ss_pred chhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHH-hhcccch--HHHHHHHHHHHhcCCCCCHHHHH
Q 038114 7 TQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLIST-CSSLRSL--QLGRKVHDHILSSKSQPDVVLQN 82 (170)
Q Consensus 7 ~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~ 82 (170)
+...|. +-..|...|++++|...|++. .... +.+...+..+-.+ +...|++ ++|...+....+.. +.+...+.
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a-l~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 119 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQA-LQLR-GENAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALM 119 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHH
Confidence 344555 788899999999999999998 5432 2355667777777 7788998 99999999998864 33578889
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcccCCC
Q 038114 83 YILNMYGKCGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 83 ~li~~~~~~~~~~~a~~~~~~m~~~~~ 109 (170)
.+-..|.+.|++++|...|++......
T Consensus 120 ~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 120 LLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 999999999999999999999876543
No 161
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.83 E-value=0.00013 Score=53.07 Aligned_cols=153 Identities=8% Similarity=-0.048 Sum_probs=104.6
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhh----CCCC--c-chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCC----CCHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNN----TNFR--I-RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQ----PDVVLQ 81 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~----~~~~--p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~ 81 (170)
+-..+...|++++|...+++. .. .+-. | ....+..+-..+...|++++|...+.+..+.... .....+
T Consensus 99 la~~~~~~G~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKA-FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH-HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 677788999999999999886 33 2222 3 2335666777888999999999999988764221 134678
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCCh-hhHH-----HHHHHHhCCCChHHHHHHHHHHHhCCCCC---CHhh
Q 038114 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDL-ASWN-----AIIAGVASPSNANEAMSLFSEMRDRELIP---DGLT 152 (170)
Q Consensus 82 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~-~~~~-----~li~~~~~~g~~~~a~~l~~~m~~~~~~p---~~~t 152 (170)
..+-..+...|++++|...+++...... .++. ..+. .....+...|++++|..++.+.......+ ....
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLG--NGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHT--TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHh--ccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 8888899999999999999998754321 1111 1222 23344778999999999998876543221 1224
Q ss_pred HHHHHHHhcCCCcccc
Q 038114 153 VRSLLCACTSPSNVLY 168 (170)
Q Consensus 153 ~~~ll~~~~~~g~~e~ 168 (170)
+..+...+...|+.++
T Consensus 256 ~~~la~~~~~~g~~~~ 271 (373)
T 1hz4_A 256 WRNIARAQILLGEFEP 271 (373)
T ss_dssp HHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCHHH
Confidence 5666677777777654
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.83 E-value=0.00021 Score=44.11 Aligned_cols=96 Identities=11% Similarity=0.005 Sum_probs=76.1
Q ss_pred hHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcC--CCCC----HHHH
Q 038114 9 LRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK--SQPD----VVLQ 81 (170)
Q Consensus 9 ~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~----~~~~ 81 (170)
..+. +-..+.+.|++++|+..|++. .... +-+...|..+-.+|...|++++|...+....+.. ..++ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~A-l~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKA-IELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH-HHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4455 788899999999999999998 5432 2356688888899999999999999999887631 1222 2467
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhccc
Q 038114 82 NYILNMYGKCGSLEDARVVSDEMPQ 106 (170)
Q Consensus 82 ~~li~~~~~~~~~~~a~~~~~~m~~ 106 (170)
..+-.++...|++++|.+.|++...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7788889999999999999998665
No 163
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.81 E-value=0.0013 Score=49.86 Aligned_cols=114 Identities=7% Similarity=-0.108 Sum_probs=60.8
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhc----ccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----C
Q 038114 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSS----LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK----C 91 (170)
Q Consensus 20 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~ 91 (170)
.++++.|+..|++. ...| ++..+..|-..|.. .+++++|..+|.+..+.| ++..+..|-..|.. .
T Consensus 56 ~~~~~~A~~~~~~a-~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRA-AEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHH-HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHH-HHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 56666666666666 4433 23344444444444 566666666666665554 34455555555555 5
Q ss_pred CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhC----CCChHHHHHHHHHHHhCC
Q 038114 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS----PSNANEAMSLFSEMRDRE 145 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~ 145 (170)
+++++|.+.|+...+.+. ...+..+-..|.. .++.++|...|++..+.|
T Consensus 129 ~~~~~A~~~~~~a~~~~~-----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~ 181 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQGR-----DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG 181 (490)
T ss_dssp CCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 566666666665544332 1333444444433 455666666665555443
No 164
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.81 E-value=0.00016 Score=52.41 Aligned_cols=125 Identities=10% Similarity=-0.036 Sum_probs=73.6
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchh------------------hHHHHHHHhhcccchHHHHHHHHHHHhcCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPS------------------TYACLISTCSSLRSLQLGRKVHDHILSSKS 74 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~------------------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 74 (170)
+-..+.+.|++++|...|++. ... .|+.. .|..+-.++.+.|++++|...+....+..
T Consensus 185 ~g~~~~~~g~~~~A~~~y~~A-l~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 260 (338)
T 2if4_A 185 DGNSLFKEEKLEEAMQQYEMA-IAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE- 260 (338)
T ss_dssp HHHHTCSSSCCHHHHHHHHHH-HHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCCHHHHHHHHHHH-HHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 677888999999999999987 432 23332 67777888889999999999999988763
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHH-HhCCCChHHHHHHHHHHHhC
Q 038114 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG-VASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 75 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~l~~~m~~~ 144 (170)
+.+...|..+-.+|...|++++|...|+...+... -+...+..+... ....+..+++..+|..|...
T Consensus 261 p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p---~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 261 EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP---DDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 33678889999999999999999999998876533 123344444333 23445677778888877643
No 165
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.79 E-value=0.00084 Score=42.09 Aligned_cols=117 Identities=10% Similarity=-0.064 Sum_probs=92.1
Q ss_pred hhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----C
Q 038114 16 SQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK----C 91 (170)
Q Consensus 16 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~ 91 (170)
+....+++++|+..|++. .+.|. |... |=..|...+.++.|.++|....+.| ++..+..|-..|.. .
T Consensus 4 G~g~~~d~~~A~~~~~~a-a~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~ 74 (138)
T 1klx_A 4 GGTVKKDLKKAIQYYVKA-CELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVK 74 (138)
T ss_dssp CSSHHHHHHHHHHHHHHH-HHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSC
T ss_pred CcCCccCHHHHHHHHHHH-HcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCC
Confidence 445567889999999999 77773 3333 5566677778888999999998876 67788888888887 7
Q ss_pred CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhC----CCChHHHHHHHHHHHhCCC
Q 038114 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS----PSNANEAMSLFSEMRDREL 146 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~~ 146 (170)
+++++|.+.|+...+.|. ...+..+-..|.. .++.++|..+|++-.+.|.
T Consensus 75 ~d~~~A~~~~~~Aa~~g~-----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 75 KDLRKAAQYYSKACGLND-----QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp CCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 899999999999877655 2556666666666 7899999999999888774
No 166
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.76 E-value=0.0017 Score=49.16 Aligned_cols=113 Identities=11% Similarity=-0.040 Sum_probs=54.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhc----ccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----C
Q 038114 20 QNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSS----LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK----C 91 (170)
Q Consensus 20 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~ 91 (170)
.+++++|...|++. ...| ++..+..|-..|.. .+++++|...|+...+.| ++..+..|-..|.. .
T Consensus 92 ~~~~~~A~~~~~~a-~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 92 PQDYAQAVIWYKKA-ALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp CCCHHHHHHHHHHH-HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCHHHHHHHHHHH-HHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 55666666666665 4433 22333333333433 455556666665555544 33444444444444 4
Q ss_pred CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhC----CCChHHHHHHHHHHHhC
Q 038114 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS----PSNANEAMSLFSEMRDR 144 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~ 144 (170)
+++++|.+.|+...+.+. ...+..+-..|.. .++.++|...|++-.+.
T Consensus 165 ~d~~~A~~~~~~a~~~~~-----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 216 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQGN-----VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS 216 (490)
T ss_dssp CCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC
Confidence 455555555555443321 2333334333333 44555555555544443
No 167
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.74 E-value=0.00044 Score=44.21 Aligned_cols=92 Identities=14% Similarity=0.039 Sum_probs=48.1
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhC--------C---------CCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNT--------N---------FRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQ 75 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~--------~---------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 75 (170)
.-..+.+.|++++|+..|.+. ... . -+.+...|..+-.++.+.|++++|...+....+.. +
T Consensus 17 ~G~~~~~~~~~~~A~~~y~~a-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p 94 (162)
T 3rkv_A 17 KGNELFVQKDYKEAIDAYRDA-LTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-E 94 (162)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-C
Confidence 566677777777777777776 332 0 00112244444445555555555555555555432 2
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 038114 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106 (170)
Q Consensus 76 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 106 (170)
.+...|..+-.+|...|++++|...|+....
T Consensus 95 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 95 TNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 2344555555555555555555555554443
No 168
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.68 E-value=0.00028 Score=51.87 Aligned_cols=92 Identities=7% Similarity=-0.076 Sum_probs=50.8
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhC--------------CCC-cchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNT--------------NFR-IRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD 77 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~--------------~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 77 (170)
+-..+.+.|++++|+..|++. ... ... .+...|..+-.++.+.|++++|...+++..+.. +-+
T Consensus 229 ~g~~~~~~g~~~~Ai~~y~kA-l~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~ 306 (370)
T 1ihg_A 229 IGNTFFKSQNWEMAIKKYTKV-LRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSN 306 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTC
T ss_pred HHHHHHHhcCHHHHHHHHHHH-HHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chh
Confidence 456666777777777777766 320 011 123345555555555666666666666555532 223
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 038114 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQ 106 (170)
Q Consensus 78 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 106 (170)
...|..+-.+|.+.|++++|.+.|++..+
T Consensus 307 ~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 307 TKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555555566666666666666655544
No 169
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.68 E-value=0.00014 Score=54.94 Aligned_cols=118 Identities=8% Similarity=-0.113 Sum_probs=90.1
Q ss_pred hhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHcCCCHHHHHHHHhhcccCC
Q 038114 43 PSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD--------------VVLQNYILNMYGKCGSLEDARVVSDEMPQRN 108 (170)
Q Consensus 43 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 108 (170)
...+..+-..+.+.|++++|...|.+..+...... ...|..+-.+|.+.|++++|...|++.....
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34677777888899999999999999987532211 6889999999999999999999999988654
Q ss_pred CCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHhcCCCc
Q 038114 109 VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP-DGLTVRSLLCACTSPSN 165 (170)
Q Consensus 109 ~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p-~~~t~~~ll~~~~~~g~ 165 (170)
. .+...|..+-.+|...|++++|...|++..+. .| +...+..+-.++.+.++
T Consensus 348 p---~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~ 400 (457)
T 1kt0_A 348 S---ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKE 400 (457)
T ss_dssp T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHH
T ss_pred C---ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHH
Confidence 4 45678888999999999999999999988764 34 33445555555444443
No 170
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.61 E-value=0.0009 Score=47.11 Aligned_cols=98 Identities=8% Similarity=-0.100 Sum_probs=71.6
Q ss_pred chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHH
Q 038114 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAI 121 (170)
Q Consensus 42 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l 121 (170)
+...+..+-..+.+.|++++|...|.+..+.. +.+...|..+-.+|.+.|++++|...++...+... -+...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG---QSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT---TCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CCHHHHHHH
Confidence 34456666677777888888888888877653 23577788888888888888888888887765533 345677777
Q ss_pred HHHHhCCCChHHHHHHHHHHHh
Q 038114 122 IAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 122 i~~~~~~g~~~~a~~l~~~m~~ 143 (170)
-.++...|++++|...|.+..+
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7888888888888888877654
No 171
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.60 E-value=0.0011 Score=49.57 Aligned_cols=108 Identities=7% Similarity=-0.063 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChh--hHHHHH-HHHhCCCChHHHH
Q 038114 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLA--SWNAII-AGVASPSNANEAM 135 (170)
Q Consensus 59 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~--~~~~li-~~~~~~g~~~~a~ 135 (170)
.+.|...+....+.. +.+...+..+-..|.+.|++++|.+.|++...... .|... .+..+. ......|+.++|+
T Consensus 316 ~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ai 392 (472)
T 4g1t_A 316 IGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL--TPVAKQLLHLRYGNFQLYQMKCEDKAI 392 (472)
T ss_dssp HHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 344445555444432 22344566667777888888888888887765443 22211 122221 2234667888888
Q ss_pred HHHHHHHhCC-----------------------CCCCHhhHHHHHHHhcCCCccccC
Q 038114 136 SLFSEMRDRE-----------------------LIPDGLTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 136 ~l~~~m~~~~-----------------------~~p~~~t~~~ll~~~~~~g~~e~~ 169 (170)
..|.+..+.. -..+..+|..+-..|...|+.+++
T Consensus 393 ~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A 449 (472)
T 4g1t_A 393 HHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQA 449 (472)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 8777654321 122345666666666666666654
No 172
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.0005 Score=40.59 Aligned_cols=65 Identities=8% Similarity=-0.081 Sum_probs=44.2
Q ss_pred chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccC
Q 038114 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQR 107 (170)
Q Consensus 42 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 107 (170)
+...+..+-..+.+.|++++|...|.+..+.. +.+...|..+-.+|.+.|++++|.+.|+.....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 44556666666777777777777777776653 335667777777777777777777777776654
No 173
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.59 E-value=0.0017 Score=41.37 Aligned_cols=110 Identities=13% Similarity=0.066 Sum_probs=85.6
Q ss_pred hhhHHHHHHHhhcccchHHHHHHHHHHHhc--------C---------CCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 038114 43 PSTYACLISTCSSLRSLQLGRKVHDHILSS--------K---------SQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105 (170)
Q Consensus 43 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 105 (170)
...+...-..+.+.|++++|...|....+. . -+.+...|..+-.+|.+.|++++|...++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666667788899999999999988764 1 12235789999999999999999999999887
Q ss_pred cCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHh-hHHHHH
Q 038114 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL-TVRSLL 157 (170)
Q Consensus 106 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~-t~~~ll 157 (170)
..+. .+...|..+-.++...|++++|...|++.... .|+.. .....+
T Consensus 91 ~~~p---~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~l 138 (162)
T 3rkv_A 91 KREE---TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAASVVAREM 138 (162)
T ss_dssp HHST---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGHHHHHHHH
T ss_pred hcCC---cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 6543 45678889999999999999999999988765 45544 433333
No 174
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.56 E-value=0.0071 Score=40.53 Aligned_cols=127 Identities=9% Similarity=-0.112 Sum_probs=94.6
Q ss_pred HHHhhhcccC----CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhc----ccchHHHHHHHHHHHhcCCC-CCHHHHH
Q 038114 12 TFYNSQPIQN----LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSS----LRSLQLGRKVHDHILSSKSQ-PDVVLQN 82 (170)
Q Consensus 12 ~li~~~~~~~----~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~-~~~~~~~ 82 (170)
+|-..|.. + ++++|...|++. ...| ++..+..|-..|.. .+++++|..+|....+.|.. .++..+.
T Consensus 55 ~lg~~y~~-~g~~~~~~~A~~~~~~A-~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~ 129 (212)
T 3rjv_A 55 LLAQLKIR-NPQQADYPQARQLAEKA-VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQM 129 (212)
T ss_dssp HHHHHTTS-STTSCCHHHHHHHHHHH-HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHH
T ss_pred HHHHHHHc-CCCCCCHHHHHHHHHHH-HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHH
Confidence 36555666 6 899999999999 6665 45566666666666 78999999999999887632 1267888
Q ss_pred HHHHHHHc----CCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhC------CCChHHHHHHHHHHHhCCCC
Q 038114 83 YILNMYGK----CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS------PSNANEAMSLFSEMRDRELI 147 (170)
Q Consensus 83 ~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~------~g~~~~a~~l~~~m~~~~~~ 147 (170)
.|-..|.. .+++++|...|+...+.+- +...+..+-..|.. ..+.++|..+|+.-.+.|..
T Consensus 130 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~----~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 130 LLGLIYASGVHGPEDDVKASEYFKGSSSLSR----TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHHTSSSSCCHHHHHHHHHHHHHTSC----TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC----CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 88888888 7899999999999876522 22355555555543 33899999999998888744
No 175
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.53 E-value=0.00062 Score=40.82 Aligned_cols=63 Identities=11% Similarity=-0.069 Sum_probs=34.9
Q ss_pred chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 038114 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105 (170)
Q Consensus 42 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 105 (170)
+...+..+-.++...|++++|...|+...+.. +.+...|..+-.+|.+.|++++|...|+...
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555556666666666666555542 2234555555556666666666666655544
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.52 E-value=0.00035 Score=51.38 Aligned_cols=114 Identities=11% Similarity=-0.011 Sum_probs=87.2
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhc---------------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCC
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILSS---------------KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 109 (170)
.+..+-..+.+.|++++|...|.+..+. --..+...|..+-.+|.+.|++++|.+.+++..+...
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 4666677788899999999999988761 1122467899999999999999999999999887533
Q ss_pred CCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHhcCC
Q 038114 110 IESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP-DGLTVRSLLCACTSP 163 (170)
Q Consensus 110 ~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p-~~~t~~~ll~~~~~~ 163 (170)
-+...|..+-.+|...|++++|...|++..+. .| +...+..+-.++.+.
T Consensus 305 ---~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 305 ---SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKI 354 (370)
T ss_dssp ---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence 35678888899999999999999999988765 34 344444444444433
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.0026 Score=46.94 Aligned_cols=157 Identities=6% Similarity=-0.121 Sum_probs=106.2
Q ss_pred HHHhhhcccCCHHHHHHHHHHHHhhCCCCcchh----hHHHHHHHhhcccchHHHHHHHHHHHh----cCCCCC-HHHHH
Q 038114 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPS----TYACLISTCSSLRSLQLGRKVHDHILS----SKSQPD-VVLQN 82 (170)
Q Consensus 12 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~-~~~~~ 82 (170)
++...|...|++++|.+.+.+.....+-.++.. +.+.+=..+...|+++.+..++..... .+..+. ..++.
T Consensus 60 ~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (434)
T 4b4t_Q 60 ELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSI 139 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 388999999999999999988733222223322 223333344567889999998887764 233333 56888
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcccC--CCCCC-CChhhHHHHHHHHhCCCChHHHHHHHHHHHhC--CCC-C-C--HhhH
Q 038114 83 YILNMYGKCGSLEDARVVSDEMPQR--NVIES-PDLASWNAIIAGVASPSNANEAMSLFSEMRDR--ELI-P-D--GLTV 153 (170)
Q Consensus 83 ~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~-p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~-p-~--~~t~ 153 (170)
.+...|...|++++|..++.+.... +...+ .....|..+...|...|++++|..++++.... .+. | . ...+
T Consensus 140 ~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 219 (434)
T 4b4t_Q 140 KLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELD 219 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Confidence 9999999999999999998876422 11002 22457888899999999999999999877543 121 2 1 2345
Q ss_pred HHHHHHhcCCCcccc
Q 038114 154 RSLLCACTSPSNVLY 168 (170)
Q Consensus 154 ~~ll~~~~~~g~~e~ 168 (170)
..+...+...|++++
T Consensus 220 ~~~g~~~~~~~~y~~ 234 (434)
T 4b4t_Q 220 LMSGILHCEDKDYKT 234 (434)
T ss_dssp HHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHhHHH
Confidence 555555666665543
No 178
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.46 E-value=0.0037 Score=49.71 Aligned_cols=144 Identities=9% Similarity=-0.021 Sum_probs=106.6
Q ss_pred HhH-HHhhhcccCCHHHHHHHHHHHHhhC--CCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038114 10 RFT-FYNSQPIQNLYNEALVAFDFLQNNT--NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86 (170)
Q Consensus 10 ~~~-li~~~~~~~~~~~a~~~~~~m~~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 86 (170)
.|- .+....+.|..+.|+.+|... ... ...+......+.+.... .++.+.|..+|+...+. ++-++..|...++
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A-~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKC-RRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-HHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-HHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHH
Confidence 466 577777889999999999999 554 22233333344444332 35689999999999886 3446778889999
Q ss_pred HHHcCCCHHHHHHHHhhcccCCCCCCC--ChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHh
Q 038114 87 MYGKCGSLEDARVVSDEMPQRNVIESP--DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~ 160 (170)
.....|+.+.|..+|+....... .+ ....|...+.-=...|+.+.+..+.+.+.+. .|+......+++-|
T Consensus 513 fe~~~~~~~~AR~lferal~~~~--~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKIS--DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSS--STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 88899999999999998876644 22 3467888888888999999999999999866 45555555555554
No 179
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.00063 Score=40.13 Aligned_cols=92 Identities=23% Similarity=0.148 Sum_probs=57.8
Q ss_pred hhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCC-------HH
Q 038114 8 QLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD-------VV 79 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-------~~ 79 (170)
...|. +-..+.+.|++++|...|++. .... +.+...+..+-.++...|++++|...+....+.. |+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQL-ITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 34444 677777888888888888777 4432 2355667777777778888888888888877642 32 34
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhh
Q 038114 80 LQNYILNMYGKCGSLEDARVVSDE 103 (170)
Q Consensus 80 ~~~~li~~~~~~~~~~~a~~~~~~ 103 (170)
.+..+-.++...|+++.|...|++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 444455555555555555444443
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.44 E-value=0.00011 Score=46.18 Aligned_cols=125 Identities=14% Similarity=0.004 Sum_probs=87.8
Q ss_pred hhHHHHHHHhhcccchHHHHHHHHHHHhcCC---CCC--HHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCC---CCCCh
Q 038114 44 STYACLISTCSSLRSLQLGRKVHDHILSSKS---QPD--VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI---ESPDL 115 (170)
Q Consensus 44 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~p~~ 115 (170)
.++..+-..+...|++++|...+.+..+... .+. ..++..+-..|...|++++|.+.|++....... .....
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3667777788889999999999998875311 111 257888889999999999999999976532110 01124
Q ss_pred hhHHHHHHHHhCCCChHHHHHHHHHHHhC----CCC-CCHhhHHHHHHHhcCCCcccc
Q 038114 116 ASWNAIIAGVASPSNANEAMSLFSEMRDR----ELI-PDGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 116 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~-p~~~t~~~ll~~~~~~g~~e~ 168 (170)
..+..+-..+...|++++|...+++..+. +-. ....++..+-..+...|+.++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 147 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 147 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHH
Confidence 56778888899999999999999887643 211 123456667777777776554
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.00096 Score=49.28 Aligned_cols=153 Identities=12% Similarity=0.008 Sum_probs=105.2
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCC-Ccch---------------hhHHHHHHHhhcccchHHHHHHHHHHHhc-CCCC
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNF-RIRP---------------STYACLISTCSSLRSLQLGRKVHDHILSS-KSQP 76 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~---------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~ 76 (170)
...+.+.|++++|++.|..+ ..... ..+. ..+..+...|...|++++|.+.+....+. +-.+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSL-LDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHH-HHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHCCCHHHHHHHHHHH-HhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 56678899999999999998 44322 2221 13778889999999999999999988652 1122
Q ss_pred CH----HHHHHHHHHHHcCCCHHHHHHHHhhccc----CCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC--CC
Q 038114 77 DV----VLQNYILNMYGKCGSLEDARVVSDEMPQ----RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR--EL 146 (170)
Q Consensus 77 ~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~ 146 (170)
+. .+.+.+-..+...|+++.|.+++..... .+.. ..-..++..+...+...|++++|..++.+.... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 168 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV-FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL 168 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC-SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc
Confidence 22 2333333344456889999998886532 2220 223457888899999999999999999987643 11
Q ss_pred --CC-CHhhHHHHHHHhcCCCcccc
Q 038114 147 --IP-DGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 147 --~p-~~~t~~~ll~~~~~~g~~e~ 168 (170)
+| ....|..+.+.|...|++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (434)
T 4b4t_Q 169 DDKPSLVDVHLLESKVYHKLRNLAK 193 (434)
T ss_dssp SCSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcHHH
Confidence 22 24468888888888887654
No 182
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.30 E-value=0.002 Score=36.39 Aligned_cols=52 Identities=12% Similarity=0.011 Sum_probs=20.0
Q ss_pred HhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 038114 52 TCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104 (170)
Q Consensus 52 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 104 (170)
.+...|++++|...|.+..+.. +.+...+..+-..|.+.|++++|.+.|++.
T Consensus 18 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 18 AYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333344444444444333321 112333333444444444444444444433
No 183
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.29 E-value=0.0027 Score=47.36 Aligned_cols=127 Identities=11% Similarity=-0.047 Sum_probs=81.7
Q ss_pred hcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC-----
Q 038114 17 QPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC----- 91 (170)
Q Consensus 17 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----- 91 (170)
+...+++++|.+.+++. .... +.+...+..+-..+...|++++|...+.+..+.. +-+..++..+-..|...
T Consensus 223 ~~~~~~~~~a~~~~~~a-l~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~ 299 (472)
T 4g1t_A 223 REEGEEEGEGEKLVEEA-LEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVM 299 (472)
T ss_dssp C------CHHHHHHHHH-HHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHH-HHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhh
Confidence 34456777888888776 4332 2345567777778888888888888888877653 22455666555544321
Q ss_pred --------------CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCC
Q 038114 92 --------------GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD 149 (170)
Q Consensus 92 --------------~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~ 149 (170)
+.++.|...|+.....+. .+..++..+-..+...|++++|+..|++..+....|.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~ 368 (472)
T 4g1t_A 300 NLRENGMYGKRKLLELIGHAVAHLKKADEAND---NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368 (472)
T ss_dssp HC------CHHHHHHHHHHHHHHHHHHHHHCT---TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC---chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh
Confidence 224566666666554332 3446788888999999999999999999887654443
No 184
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.28 E-value=0.00074 Score=39.69 Aligned_cols=62 Identities=6% Similarity=0.020 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 78 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
+..+..+-..|.+.|++++|.+.|+...+.+. -+...|..+-..|...|++++|...|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDP---DYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444555555555555555554443322 122344444455555555555555554443
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.26 E-value=0.0032 Score=45.56 Aligned_cols=95 Identities=8% Similarity=-0.095 Sum_probs=78.4
Q ss_pred hhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCH------------------HHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 038114 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDV------------------VLQNYILNMYGKCGSLEDARVVSDEMP 105 (170)
Q Consensus 44 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~------------------~~~~~li~~~~~~~~~~~a~~~~~~m~ 105 (170)
..+..+-..+.+.|++++|...|.+..+. .|+. ..|..+-.+|.+.|++++|...|+...
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34666777888999999999999998765 3333 278889999999999999999999887
Q ss_pred cCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHh
Q 038114 106 QRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 106 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 143 (170)
+... .+...|..+-.+|...|++++|...|++..+
T Consensus 258 ~~~p---~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 258 TEEE---KNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHCT---TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6432 3567899999999999999999999997754
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.26 E-value=0.0018 Score=41.87 Aligned_cols=91 Identities=16% Similarity=0.014 Sum_probs=48.7
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCC-c-----c-----hhhHHHHHHHhhcccchHHHHHHHHHHHhc-----CCCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFR-I-----R-----PSTYACLISTCSSLRSLQLGRKVHDHILSS-----KSQP 76 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~-p-----~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~ 76 (170)
.-..+.+.|++++|+..|++. .+.... | + ...|..+-.++.+.|++++|...++...+. .+.|
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kA-L~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRA-MEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH-HHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHCCCHHHHHHHHHHH-HhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 566677888999999988886 432211 1 1 114455555555555555555555555442 1122
Q ss_pred C-HHHH----HHHHHHHHcCCCHHHHHHHHhhc
Q 038114 77 D-VVLQ----NYILNMYGKCGSLEDARVVSDEM 104 (170)
Q Consensus 77 ~-~~~~----~~li~~~~~~~~~~~a~~~~~~m 104 (170)
+ ...| ...-.++...|++++|...|++.
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 2 3344 44445555555555555555543
No 187
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.24 E-value=0.0016 Score=51.73 Aligned_cols=149 Identities=13% Similarity=0.061 Sum_probs=84.0
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCC---------CCcc------------hhhHHHHHHHhhcccchHHHHHHHHHHHh
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTN---------FRIR------------PSTYACLISTCSSLRSLQLGRKVHDHILS 71 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~---------~~p~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 71 (170)
.+...-+.|+++.|.++|+.+ .... -.|+ ..+|...++...+.|..+.|.++|....+
T Consensus 384 ~a~~ee~~~~~e~aR~iyek~-l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 384 LSEQYELNTKIPEIETTILSC-IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH-HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455556677777787777776 4321 0121 22566666666667777777788777766
Q ss_pred c-C-CCCCHHHHHHHHHHHHcC-CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCC
Q 038114 72 S-K-SQPDVVLQNYILNMYGKC-GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP 148 (170)
Q Consensus 72 ~-~-~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p 148 (170)
. + ..+...+..+.+. .+. ++++.|.++|+...+. . +-+...|...+.-....|+.+.|..+|+........+
T Consensus 463 ~~~~~~~~lyi~~A~lE--~~~~~d~e~Ar~ife~~Lk~-~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 463 LKKLVTPDIYLENAYIE--YHISKDTKTACKVLELGLKY-F--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp TGGGSCTHHHHHHHHHH--HTTTSCCHHHHHHHHHHHHH-H--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred hcCCCChHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHH-C--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 5 2 1222333223222 233 3477777777766544 2 2344455666666666777888888887666543211
Q ss_pred --CHhhHHHHHHHhcCCCccc
Q 038114 149 --DGLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 149 --~~~t~~~ll~~~~~~g~~e 167 (170)
....|...++-=.+.|+.+
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~ 558 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLN 558 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSH
T ss_pred HHHHHHHHHHHHHHHHcCCHH
Confidence 2334555555444455443
No 188
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.21 E-value=0.0036 Score=37.33 Aligned_cols=80 Identities=8% Similarity=0.042 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHH
Q 038114 61 LGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140 (170)
Q Consensus 61 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~ 140 (170)
.+...|....+.. +.+...+..+-..|.+.|++++|...|+....... .+...|..+-..+...|++++|...|++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP---TYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566777776653 34678888999999999999999999998876533 3456788888899999999999999998
Q ss_pred HHhC
Q 038114 141 MRDR 144 (170)
Q Consensus 141 m~~~ 144 (170)
....
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 189
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.17 E-value=0.0026 Score=35.92 Aligned_cols=80 Identities=13% Similarity=0.113 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 038114 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156 (170)
Q Consensus 77 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~l 156 (170)
+...+..+-..+.+.|++++|.+.|++...... .+...+..+-..+...|++++|...|++..+.. .-+...+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l 83 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 356788888899999999999999998876533 356788888899999999999999999887653 1234444444
Q ss_pred HHHh
Q 038114 157 LCAC 160 (170)
Q Consensus 157 l~~~ 160 (170)
-.++
T Consensus 84 ~~~~ 87 (91)
T 1na3_A 84 GNAK 87 (91)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.17 E-value=0.006 Score=39.38 Aligned_cols=111 Identities=9% Similarity=0.049 Sum_probs=82.7
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhcCCCC------C-----HHHHHHHHHHHHcCCCHHHHHHHHhhcccC-----C
Q 038114 45 TYACLISTCSSLRSLQLGRKVHDHILSSKSQP------D-----VVLQNYILNMYGKCGSLEDARVVSDEMPQR-----N 108 (170)
Q Consensus 45 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~------~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~ 108 (170)
.+...-..+.+.|++++|...|+...+..... + ...|+.+-.++.+.|++++|...|+...+. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34455566778899999999999988753221 2 338999999999999999999999987654 2
Q ss_pred CCCCC-ChhhH----HHHHHHHhCCCChHHHHHHHHHHHh-----CCCCCCHhhHHHHH
Q 038114 109 VIESP-DLASW----NAIIAGVASPSNANEAMSLFSEMRD-----RELIPDGLTVRSLL 157 (170)
Q Consensus 109 ~~~~p-~~~~~----~~li~~~~~~g~~~~a~~l~~~m~~-----~~~~p~~~t~~~ll 157 (170)
+ .| +...| ...-.++...|++++|+..|++-.+ .|+.+........+
T Consensus 93 ~--~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 93 L--NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp T--TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred C--CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 2 33 34567 7888899999999999999998753 36666655544443
No 191
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.11 E-value=0.0017 Score=45.92 Aligned_cols=116 Identities=12% Similarity=-0.068 Sum_probs=80.1
Q ss_pred HHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCC--hhhHHHHHHHH
Q 038114 48 CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPD--LASWNAIIAGV 125 (170)
Q Consensus 48 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~--~~~~~~li~~~ 125 (170)
.....+...|++++|.++|..+...+ |+....-.+-..+.+.+++++|+..|+...... .|. ...+..+-.++
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~---d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP---DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC---CcccHHHHHHHHHHHH
Confidence 34566778899999999999887654 443355555668899999999999998554321 111 23566677889
Q ss_pred hCCCChHHHHHHHHHHHhCCCCCCH--hhHHHHHHHhcCCCcccc
Q 038114 126 ASPSNANEAMSLFSEMRDRELIPDG--LTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 126 ~~~g~~~~a~~l~~~m~~~~~~p~~--~t~~~ll~~~~~~g~~e~ 168 (170)
.+.|++++|+..|++-......|.. ......-.++.+.|+.++
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~de 226 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESA 226 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999988754443642 233444444555555544
No 192
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.05 E-value=0.041 Score=41.36 Aligned_cols=94 Identities=13% Similarity=0.158 Sum_probs=46.3
Q ss_pred hHHHHHHHhhccc---chHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC----CCHHHHHHHHhhcccCCCCCCCChhh
Q 038114 45 TYACLISTCSSLR---SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC----GSLEDARVVSDEMPQRNVIESPDLAS 117 (170)
Q Consensus 45 ~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~~~p~~~~ 117 (170)
.+..|-..|...| +.++|...|....+.| .++...+..|-..|... +++++|.+.|+... .|. | ..
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~---~--~a 250 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGY---P--AS 250 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGS---T--HH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCC---H--HH
Confidence 4444444454455 5666666666665555 33344434444444433 45666666666555 322 1 22
Q ss_pred HHHHHHH-H--hCCCChHHHHHHHHHHHhCC
Q 038114 118 WNAIIAG-V--ASPSNANEAMSLFSEMRDRE 145 (170)
Q Consensus 118 ~~~li~~-~--~~~g~~~~a~~l~~~m~~~~ 145 (170)
+..+-.. + ...+++++|..+|++-.+.|
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 2222222 2 33556666666666555544
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.05 E-value=0.0023 Score=48.87 Aligned_cols=91 Identities=8% Similarity=-0.103 Sum_probs=70.1
Q ss_pred hhcccchHHHHHHHHHHHhc-----C-CCCC-HHHHHHHHHHHHcCCCHHHHHHHHhhcc-----cCCCCCCCChhhHHH
Q 038114 53 CSSLRSLQLGRKVHDHILSS-----K-SQPD-VVLQNYILNMYGKCGSLEDARVVSDEMP-----QRNVIESPDLASWNA 120 (170)
Q Consensus 53 ~~~~~~~~~a~~~~~~m~~~-----~-~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~~~~~~p~~~~~~~ 120 (170)
+...|++++|..++++..+. | -.|+ ..+++.|...|...|++++|+.++++.. ..|..++--..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45789999999999888652 1 1333 5689999999999999999999988653 223321223566999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHh
Q 038114 121 IIAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 121 li~~~~~~g~~~~a~~l~~~m~~ 143 (170)
|-..|...|++++|+.++++-..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999987653
No 194
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.03 E-value=0.005 Score=46.30 Aligned_cols=85 Identities=8% Similarity=-0.053 Sum_probs=43.4
Q ss_pred cchHHHHHHHHHHHhc---CC---CCC-HHHHHHHHHHHHcCCCHHHHHHHHhhcc-----cCCCCCCCC-hhhHHHHHH
Q 038114 57 RSLQLGRKVHDHILSS---KS---QPD-VVLQNYILNMYGKCGSLEDARVVSDEMP-----QRNVIESPD-LASWNAIIA 123 (170)
Q Consensus 57 ~~~~~a~~~~~~m~~~---~~---~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~~~~~~p~-~~~~~~li~ 123 (170)
|++++|..++++..+. -+ .|+ ..+++.|..+|...|++++|+.++++.. ..|.. -|+ ..+|+.+-.
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-SLNVASMWLKLGR 390 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-ChHHHHHHHHHHH
Confidence 3455555555554431 11 122 3456666666666666666666655432 12222 222 334666666
Q ss_pred HHhCCCChHHHHHHHHHHH
Q 038114 124 GVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 124 ~~~~~g~~~~a~~l~~~m~ 142 (170)
.|...|++++|+.++++-.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6666666666666665543
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.00 E-value=0.0043 Score=36.26 Aligned_cols=60 Identities=10% Similarity=0.004 Sum_probs=30.7
Q ss_pred hhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 038114 44 STYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104 (170)
Q Consensus 44 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 104 (170)
..+..+-.++...|++++|...|+...+.. +-+...|..+-.+|.+.|++++|.+.|++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444455555555555555555555432 112345555555555555555555555543
No 196
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.00 E-value=0.0022 Score=48.18 Aligned_cols=87 Identities=8% Similarity=0.025 Sum_probs=67.6
Q ss_pred cccCCHHHHHHHHHHHHhh---CCCC---cc-hhhHHHHHHHhhcccchHHHHHHHHHHHhc-----C-CCCC-HHHHHH
Q 038114 18 PIQNLYNEALVAFDFLQNN---TNFR---IR-PSTYACLISTCSSLRSLQLGRKVHDHILSS-----K-SQPD-VVLQNY 83 (170)
Q Consensus 18 ~~~~~~~~a~~~~~~m~~~---~~~~---p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~-~~~~~~ 83 (170)
...|++++|..++++. .. .-.- |+ ..+++.|..+|...|++++|..++++..+- | -.|+ ..+++.
T Consensus 309 ~~~g~~~eA~~~~~~~-L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 309 KHYKSPSELLEICELS-QEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp TTTSCHHHHHHHHHHH-HHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHH-HHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 3467899999999886 33 1122 22 247899999999999999999999988752 2 2444 568999
Q ss_pred HHHHHHcCCCHHHHHHHHhhcc
Q 038114 84 ILNMYGKCGSLEDARVVSDEMP 105 (170)
Q Consensus 84 li~~~~~~~~~~~a~~~~~~m~ 105 (170)
|-..|...|++++|+.++++..
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHH
Confidence 9999999999999999998744
No 197
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.97 E-value=0.0026 Score=47.80 Aligned_cols=93 Identities=11% Similarity=-0.048 Sum_probs=68.4
Q ss_pred HHHhhcccchHHHHHHHHHHHhc---CCCC----CHHHHHHHHHHHHcCCCHHHHHHHHhhccc-----CCCCCCCChhh
Q 038114 50 ISTCSSLRSLQLGRKVHDHILSS---KSQP----DVVLQNYILNMYGKCGSLEDARVVSDEMPQ-----RNVIESPDLAS 117 (170)
Q Consensus 50 i~~~~~~~~~~~a~~~~~~m~~~---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~p~~~~ 117 (170)
+..+.+.|++++|..++++..+. -+.| ...+++.|...|...|++++|+.++++... .|..++--..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44556778899999999888753 1222 256888999999999999999998886532 23321222456
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 118 WNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 118 ~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
++.+-..|...|++++|+.++++-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8888899999999999999988765
No 198
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.95 E-value=0.0064 Score=45.67 Aligned_cols=91 Identities=12% Similarity=0.066 Sum_probs=71.7
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCC---CCc----chhhHHHHHHHhhcccchHHHHHHHHHHHhc-----C-CCCC-H
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTN---FRI----RPSTYACLISTCSSLRSLQLGRKVHDHILSS-----K-SQPD-V 78 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~---~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~-~ 78 (170)
.+..+.+.|++++|..++++. .... ..| ...+++.+..+|...|++++|..++.+..+- | ..|+ .
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~-L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAI-ISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHH-HHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 366777889999999999887 5321 222 2337889999999999999999999987642 2 2444 5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHhhc
Q 038114 79 VLQNYILNMYGKCGSLEDARVVSDEM 104 (170)
Q Consensus 79 ~~~~~li~~~~~~~~~~~a~~~~~~m 104 (170)
.+++.|-..|...|++++|+.++++.
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 68999999999999999999998864
No 199
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.34 E-value=0.21 Score=37.43 Aligned_cols=121 Identities=9% Similarity=-0.025 Sum_probs=83.1
Q ss_pred hHHHhhhccc----CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHH-h--hcccchHHHHHHHHHHHhcCCCCCHHHHHH
Q 038114 11 FTFYNSQPIQ----NLYNEALVAFDFLQNNTNFRIRPSTYACLIST-C--SSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83 (170)
Q Consensus 11 ~~li~~~~~~----~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 83 (170)
+++-..|... +++++|+..|++. . .| ++..+..+-.. + ...+++++|..+|.+..+.| ++..+..
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~a-a-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~ 288 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKI-A-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELL 288 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHH-G-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHH-c-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 4454444443 7899999999998 5 33 33334444333 2 45789999999999998877 5667777
Q ss_pred HHHHHHcCC-----CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhC----CCChHHHHHHHHHHHhCCC
Q 038114 84 ILNMYGKCG-----SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS----PSNANEAMSLFSEMRDREL 146 (170)
Q Consensus 84 li~~~~~~~-----~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~~ 146 (170)
|-..|. .| ++++|.+.|+... .|. ...+..+-..|.. ..+.++|..+|+.-.+.|.
T Consensus 289 Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~-----~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 289 LGKLYY-EGKWVPADAKAAEAHFEKAV-GRE-----VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHHH-HCSSSCCCHHHHHHHHHTTT-TTC-----HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHH-cCCCCCCCHHHHHHHHHHHh-CCC-----HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 777776 44 8999999999887 443 2445555455544 3488999999988776653
No 200
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.25 E-value=0.017 Score=33.16 Aligned_cols=58 Identities=14% Similarity=0.039 Sum_probs=29.8
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchh-hHHHHHHHhhcccchHHHHHHHHHHHhc
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPS-TYACLISTCSSLRSLQLGRKVHDHILSS 72 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~ 72 (170)
....+.+.|++++|...|++. .... +-+.. .+..+-.++...|++++|...|.+..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~a-l~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEF-LQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH-HHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344455556666666666555 3321 11233 4445555555556666666666655544
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.24 E-value=0.0043 Score=39.98 Aligned_cols=115 Identities=12% Similarity=0.036 Sum_probs=69.5
Q ss_pred hcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccch----------HHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038114 17 QPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSL----------QLGRKVHDHILSSKSQPDVVLQNYILN 86 (170)
Q Consensus 17 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~~~~~~~~~~~~li~ 86 (170)
..+.+.+++|+..++.. .+.. +-+...|..+=.++...+++ ++|...|++..+-. +-+...|..+-.
T Consensus 12 ~~r~~~feeA~~~~~~A-i~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ 88 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENT-YKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHH-HHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 44556778888888777 4332 23555666565666666554 47777777776653 224667777777
Q ss_pred HHHcCC-----------CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 038114 87 MYGKCG-----------SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 87 ~~~~~~-----------~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
+|...| ++++|.+.|++..+. .|+...|...+.. .++|-+++-+....
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l----~P~~~~y~~al~~------~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE----QPDNTHYLKSLEM------TAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHH------HHTHHHHHHHHHHS
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHh----CCCCHHHHHHHHH------HHhCHhccCccccc
Confidence 777654 677777777776654 5555555444443 23445555444444
No 202
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.22 E-value=0.029 Score=32.14 Aligned_cols=59 Identities=14% Similarity=0.063 Sum_probs=49.1
Q ss_pred HHHhhcccchHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHhhcccCCC
Q 038114 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVV-LQNYILNMYGKCGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 50 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 109 (170)
-..+.+.|++++|...|++..+.. +.+.. .+..+-.+|.+.|++++|.+.|+...+...
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 345667899999999999998864 33567 889999999999999999999998876544
No 203
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.16 E-value=0.026 Score=45.07 Aligned_cols=27 Identities=4% Similarity=-0.288 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 038114 78 VVLQNYILNMYGKCGSLEDARVVSDEM 104 (170)
Q Consensus 78 ~~~~~~li~~~~~~~~~~~a~~~~~~m 104 (170)
...|..|-..+.+.++++.|+++|..+
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 444444444444444444444444443
No 204
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.09 E-value=0.1 Score=39.85 Aligned_cols=122 Identities=14% Similarity=0.093 Sum_probs=88.0
Q ss_pred HhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHH--HHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038114 10 RFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILN 86 (170)
Q Consensus 10 ~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 86 (170)
.|- .+....+.+..+.|+.+|+.. +..+. +...|. +.+.... .++.+.|..+|+...+.- +-++..+...++
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~--~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid 362 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNEGV--GPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTSCC--CHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCCCC--ChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 344 466666778899999999999 54432 333443 3333322 236999999999988753 223556777888
Q ss_pred HHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHh
Q 038114 87 MYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 143 (170)
...+.|+.+.|..+|+.... +...|...+.-=...|+.+.+..++++...
T Consensus 363 ~e~~~~~~~~aR~l~er~~k-------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLEK-------TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSCC-------BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88889999999999999732 346788888766777999999998887764
No 205
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.91 E-value=0.12 Score=30.60 Aligned_cols=68 Identities=10% Similarity=0.095 Sum_probs=41.8
Q ss_pred hhccc-chHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHH
Q 038114 53 CSSLR-SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIA 123 (170)
Q Consensus 53 ~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~ 123 (170)
+.+.. +.-+..+.++.+....+.|++.+..+.+++|-|.+++..|.++|+..+.+-- +...+|..+++
T Consensus 19 F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~---~~~~iY~~~lq 87 (109)
T 1v54_E 19 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG---PHKEIYPYVIQ 87 (109)
T ss_dssp HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT---TCTTHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc---CchhhHHHHHH
Confidence 33444 4556666666666667777777777777777777777777777776664322 11234555553
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.78 E-value=0.031 Score=36.00 Aligned_cols=103 Identities=14% Similarity=-0.001 Sum_probs=79.5
Q ss_pred hcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC----------HHHHHHHHhhcccCCCCCCCChhhHHHHHH
Q 038114 54 SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS----------LEDARVVSDEMPQRNVIESPDLASWNAIIA 123 (170)
Q Consensus 54 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~p~~~~~~~li~ 123 (170)
.+.+.+++|.+.++...+.. +-+...|+.+-.++...++ +++|...|++..+.+. -+...|..+-.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP---~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP---KKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc---CcHHHHHHHHH
Confidence 35577899999999988764 4467888888778887765 4699999999887644 24567888888
Q ss_pred HHhCC-----------CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcC
Q 038114 124 GVASP-----------SNANEAMSLFSEMRDRELIPDGLTVRSLLCACTS 162 (170)
Q Consensus 124 ~~~~~-----------g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~ 162 (170)
+|... |++++|...|++-.+ +.|+..+|..-+...-+
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHT
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHh
Confidence 88766 489999999997775 47888888887776654
No 207
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=95.62 E-value=0.38 Score=34.33 Aligned_cols=135 Identities=10% Similarity=0.057 Sum_probs=88.9
Q ss_pred cchhHhH-HHhhhcccCCHH--HHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccc------hHHHHHHHHHHHhcCCCC
Q 038114 6 KTQLRFT-FYNSQPIQNLYN--EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRS------LQLGRKVHDHILSSKSQP 76 (170)
Q Consensus 6 ~~~~~~~-li~~~~~~~~~~--~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~------~~~a~~~~~~m~~~~~~~ 76 (170)
++-..|+ ---.+.+.|.++ ++++.++++ ..... -|-..|+---....+.+. ++++.+.+....... +-
T Consensus 142 kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~-i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~ 218 (306)
T 3dra_A 142 KNHHVWSYRKWLVDTFDLHNDAKELSFVDKV-IDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQ 218 (306)
T ss_dssp TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHH-HHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SS
T ss_pred CCHHHHHHHHHHHHHhcccChHHHHHHHHHH-HHhCC-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CC
Confidence 3445555 333344456666 888888888 54433 233445444444444454 778888888877764 44
Q ss_pred CHHHHHHHHHHHHcCCC-HHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHh
Q 038114 77 DVVLQNYILNMYGKCGS-LEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 77 ~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 143 (170)
|...|+-+-..+.+.|+ .+.+...+.+....+-....+...+..+...+...|+.++|.++++.+.+
T Consensus 219 n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 219 NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 68888888888877776 44455666666554300035667888888999999999999999999875
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.46 E-value=0.67 Score=36.05 Aligned_cols=139 Identities=10% Similarity=-0.011 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhccc--chHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC-CHHHHHH
Q 038114 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLR--SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG-SLEDARV 99 (170)
Q Consensus 23 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~ 99 (170)
+++++..++.+ ..... =+..+|+.---++.+.+ +++++.+.++.+.+.. .-+...|+----.+.+.| .++++.+
T Consensus 89 ~~~eL~~~~~~-l~~~p-K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESC-LRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHH-HHHCT-TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHH-HHhCC-CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHH
Confidence 89999999998 55332 24445665555566777 6799999999999875 447888988888888888 8999999
Q ss_pred HHhhcccCCCCCCCChhhHHHHHHHHhCC--------------CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCc
Q 038114 100 VSDEMPQRNVIESPDLASWNAIIAGVASP--------------SNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165 (170)
Q Consensus 100 ~~~~m~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 165 (170)
.++++.+.+. -|...|+..-..+.+. +.++++.+.+.+..... .-|...|..+-..+.+.++
T Consensus 166 ~~~~~I~~~p---~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 166 FTDSLITRNF---SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHTTTTTTC---CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHCC---CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 9999988766 4566777665554431 45788888888776543 2256667777777777776
Q ss_pred ccc
Q 038114 166 VLY 168 (170)
Q Consensus 166 ~e~ 168 (170)
.++
T Consensus 242 ~~~ 244 (567)
T 1dce_A 242 HDV 244 (567)
T ss_dssp CSC
T ss_pred ccc
Confidence 554
No 209
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.36 E-value=0.22 Score=32.61 Aligned_cols=47 Identities=15% Similarity=0.010 Sum_probs=29.9
Q ss_pred hcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHH
Q 038114 17 QPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHIL 70 (170)
Q Consensus 17 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 70 (170)
..+.|+++.|.++-+.+ -+...|..|-......|+++-|.+.|....
T Consensus 15 AL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 34567777777776665 345566666666666666666666665554
No 210
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.21 E-value=0.16 Score=29.70 Aligned_cols=66 Identities=11% Similarity=0.073 Sum_probs=42.2
Q ss_pred chhhHHHHHHHhhcccchHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccC
Q 038114 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSS------KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQR 107 (170)
Q Consensus 42 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 107 (170)
+...+..+-..+.+.+++..|..+|+...+. +-.+...++..|-.+|.+.|+++.|...+++....
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 4444555556666667777777777665542 11234567777777777888888888877776643
No 211
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.11 E-value=0.12 Score=38.11 Aligned_cols=70 Identities=9% Similarity=0.133 Sum_probs=57.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHh-----CCCCCCHhhHH
Q 038114 82 NYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD-----RELIPDGLTVR 154 (170)
Q Consensus 82 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~~~~p~~~t~~ 154 (170)
..++..+...|++++|...+....... +.+...|-.++.++.+.|+..+|++.|+...+ .|+.|+..+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~---P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 345667778899999998888876543 36788999999999999999999999998864 49999887743
No 212
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.09 E-value=0.42 Score=34.01 Aligned_cols=95 Identities=12% Similarity=0.112 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHc-----CCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCC-C
Q 038114 59 LQLGRKVHDHILSSKSQPD---VVLQNYILNMYGK-----CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP-S 129 (170)
Q Consensus 59 ~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~-g 129 (170)
...|...+++..+ +.|+ -..|+.|...|.+ .|+.++|.+.|++-.+.+. .-+..++......+++. |
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP--~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCS--AHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCC--TTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHHhcC
Confidence 3445555555544 3555 5689999999999 5999999999998876533 22357777788888885 9
Q ss_pred ChHHHHHHHHHHHhCCCC--CCHhhHHHHH
Q 038114 130 NANEAMSLFSEMRDRELI--PDGLTVRSLL 157 (170)
Q Consensus 130 ~~~~a~~l~~~m~~~~~~--p~~~t~~~ll 157 (170)
+.+.+.+++++-...... |+....+.+-
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 999999999999988877 8876666554
No 213
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=95.05 E-value=0.28 Score=30.62 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 038114 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105 (170)
Q Consensus 59 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 105 (170)
..+..+-++.+....+.|++.+..+.++++-|.+++..|.++|+..+
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444555555555555555555555555555555554
No 214
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.03 E-value=0.32 Score=29.97 Aligned_cols=90 Identities=7% Similarity=-0.163 Sum_probs=70.8
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhc----ccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSS----LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY 88 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 88 (170)
+-..|...+..+.|++.|++. .+.| ++..+..|=..|.. .+++++|..+|+...+.| ++..+..|-..|
T Consensus 31 lg~~y~~g~~~~~A~~~~~~A-a~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y 103 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKA-CELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQ 103 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHH-HHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHH-HcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHH
Confidence 555566677888899999998 6665 34555555555655 789999999999998876 567788888888
Q ss_pred Hc----CCCHHHHHHHHhhcccCCC
Q 038114 89 GK----CGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 89 ~~----~~~~~~a~~~~~~m~~~~~ 109 (170)
.. .+++++|.+.|+...+.|.
T Consensus 104 ~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 104 YAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 88 7899999999998877665
No 215
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.90 E-value=0.16 Score=29.76 Aligned_cols=72 Identities=6% Similarity=-0.050 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCC------CCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCC
Q 038114 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRN------VIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP 148 (170)
Q Consensus 75 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p 148 (170)
..+...+-.+-..+.+.++++.|...|+...+.. . .+....+..+..++.+.|+++.|..++++..+. .|
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~--~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P 77 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DP 77 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCc--ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CC
Confidence 3566777888899999999999999998765321 1 245678899999999999999999999988753 45
Q ss_pred CH
Q 038114 149 DG 150 (170)
Q Consensus 149 ~~ 150 (170)
+.
T Consensus 78 ~~ 79 (104)
T 2v5f_A 78 EH 79 (104)
T ss_dssp TC
T ss_pred CC
Confidence 44
No 216
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=94.55 E-value=0.84 Score=32.54 Aligned_cols=84 Identities=10% Similarity=0.083 Sum_probs=48.7
Q ss_pred cchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHH--HHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCC----
Q 038114 57 RSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE--DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN---- 130 (170)
Q Consensus 57 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~---- 130 (170)
++++++..+++.+.+.. +-+...|+----.+.+.+.++ ++.+.++.+.+.+. -|...|+.--..+...|.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~---~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL---KNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHSSGGGCCH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhccccchh
Confidence 56666667777666543 335666666655566666665 66666666665444 344555555444445444
Q ss_pred --hHHHHHHHHHHHhC
Q 038114 131 --ANEAMSLFSEMRDR 144 (170)
Q Consensus 131 --~~~a~~l~~~m~~~ 144 (170)
++++++.+.+....
T Consensus 200 ~~~~eEl~~~~~aI~~ 215 (306)
T 3dra_A 200 NTIDEELNYVKDKIVK 215 (306)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh
Confidence 56666666655543
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.54 E-value=0.78 Score=33.72 Aligned_cols=76 Identities=7% Similarity=-0.091 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHH
Q 038114 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVR 154 (170)
Q Consensus 75 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~ 154 (170)
+.++.+|.++-..+...|++++|...++..... .|+...|..+-..+...|++++|.+.|.+-... .|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L----n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL----EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 567889988888788889999999999998876 466677777778889999999999999866644 67777765
Q ss_pred HH
Q 038114 155 SL 156 (170)
Q Consensus 155 ~l 156 (170)
-.
T Consensus 348 ~~ 349 (372)
T 3ly7_A 348 WI 349 (372)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.37 E-value=0.37 Score=27.70 Aligned_cols=67 Identities=12% Similarity=-0.081 Sum_probs=36.4
Q ss_pred chhhHHHHHHHhhcccc---hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCC
Q 038114 42 RPSTYACLISTCSSLRS---LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 42 ~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 109 (170)
++..+..+-.++...++ .++|..++++..+.. +-++.....+-..+.+.|++++|...|+.+.+...
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 34444444444432222 466666666666543 22355555666666666666666666666665433
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.24 E-value=0.11 Score=33.06 Aligned_cols=84 Identities=11% Similarity=-0.043 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhccc---chHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHcCCCHH
Q 038114 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLR---SLQLGRKVHDHILSSKSQP--DVVLQNYILNMYGKCGSLE 95 (170)
Q Consensus 21 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~ 95 (170)
.....+.+-|... ...+. ++..+.-.+--++++++ +.+++..+++...+.. .| +...+=.|--+|.+.++++
T Consensus 12 ~~l~~~~~~y~~e-~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 12 EDLLKFEKKFQSE-KAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHH-HHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHH-HccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHH
Confidence 3445555666555 44444 45554444444455554 5667777777777654 23 2223333444567777777
Q ss_pred HHHHHHhhcccC
Q 038114 96 DARVVSDEMPQR 107 (170)
Q Consensus 96 ~a~~~~~~m~~~ 107 (170)
+|.+.++...+.
T Consensus 89 ~A~~y~~~lL~i 100 (152)
T 1pc2_A 89 KALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 777777776654
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.11 E-value=0.2 Score=31.90 Aligned_cols=89 Identities=10% Similarity=-0.001 Sum_probs=64.4
Q ss_pred ccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHhhcccCCCCCCC--ChhhHHHHHHHHhCCCC
Q 038114 56 LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCG---SLEDARVVSDEMPQRNVIESP--DLASWNAIIAGVASPSN 130 (170)
Q Consensus 56 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~p--~~~~~~~li~~~~~~g~ 130 (170)
......+.+-|.+..+.|. ++..+.-.+--++++.+ +.+++..+|++..+.+. | +...+=.+--+|.+.|+
T Consensus 11 ~~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~---p~~~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS---KEEQRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC---ccchHHHHHHHHHHHHHccC
Confidence 3456667777777767664 67888888888899988 57799999998876542 3 23334444556689999
Q ss_pred hHHHHHHHHHHHhCCCCCCH
Q 038114 131 ANEAMSLFSEMRDRELIPDG 150 (170)
Q Consensus 131 ~~~a~~l~~~m~~~~~~p~~ 150 (170)
+++|.+.++.+.+. .|+-
T Consensus 87 Y~~A~~y~~~lL~i--eP~n 104 (152)
T 1pc2_A 87 YEKALKYVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHHHHhc--CCCC
Confidence 99999999988754 4543
No 221
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.79 E-value=0.61 Score=37.64 Aligned_cols=125 Identities=14% Similarity=0.104 Sum_probs=76.5
Q ss_pred HHhhhcccCC-HHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcc--cchHHHHHHHHHHHh-----cCCCC-CH-----
Q 038114 13 FYNSQPIQNL-YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSL--RSLQLGRKVHDHILS-----SKSQP-DV----- 78 (170)
Q Consensus 13 li~~~~~~~~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~-----~~~~~-~~----- 78 (170)
++.-+...++ .+.|..+|+.+ .......+.....++|...... .+++.+.-+.+.+.. ....+ +.
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L-~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGL-TKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHH-HHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHH-HhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 4555555666 58899999999 5543322332333444444333 334444333333321 01111 11
Q ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHH
Q 038114 79 -----VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEM 141 (170)
Q Consensus 79 -----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 141 (170)
...+.=.+.+...|+++.|+++-+.-...- +-+-.+|-.|..+|...|+++.|+-.++.+
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a---PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA---LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC---chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 122222344667899999999998865431 244789999999999999999999999988
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.78 E-value=0.44 Score=37.98 Aligned_cols=49 Identities=6% Similarity=-0.137 Sum_probs=39.5
Q ss_pred hhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHH
Q 038114 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHIL 70 (170)
Q Consensus 15 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 70 (170)
....+.|+++.|+++.+.+ .+...|..+-..+.+.++++.|.+.|..+.
T Consensus 660 ~~~l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ehhhhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3346678999998887666 466788899999999999999999988875
No 223
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.63 E-value=0.61 Score=27.54 Aligned_cols=64 Identities=9% Similarity=0.117 Sum_probs=52.7
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~ 159 (170)
+.-+..+-+..+-..++ .|++....+.+.+|-|.+++..|.++|+-.+.+. .+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~Dl--VP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDL--VPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSB--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhcccc--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHH
Confidence 56677788888888888 8999999999999999999999999998887653 3335568877764
No 224
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.62 E-value=0.8 Score=28.87 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCC
Q 038114 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146 (170)
Q Consensus 81 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 146 (170)
.+..++.....|.-++-.+++.++.. +. +|++...-.+..+|.+.|+..+|.+++.+-=+.|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~--~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NN--EVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---C--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cC--CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33444555555555555555555322 11 34444555555566666666666666655555554
No 225
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.56 E-value=0.35 Score=35.72 Aligned_cols=71 Identities=7% Similarity=-0.084 Sum_probs=56.9
Q ss_pred HHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcc-----cCCCCCCCChhhHHHH
Q 038114 48 CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP-----QRNVIESPDLASWNAI 121 (170)
Q Consensus 48 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~~~~~~p~~~~~~~l 121 (170)
.++.++...|+++++...+..+.... +.+-..|..+|.++.+.|+..+|.+.|+... +.|+ .|+..+=...
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~--~P~~~l~~l~ 251 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGI--DPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSC--CCCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC--CCCHHHHHHH
Confidence 34556667899999998888887653 5678899999999999999999999999764 4588 8887664433
No 226
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=93.44 E-value=0.36 Score=35.51 Aligned_cols=74 Identities=7% Similarity=-0.096 Sum_probs=59.9
Q ss_pred CcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHH
Q 038114 40 RIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWN 119 (170)
Q Consensus 40 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~ 119 (170)
+.++.+|.++-..+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.|++.... .|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL----~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL----RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCcChHH
Confidence 4566677777666666799999999999999875 78888888888899999999999999987665 45656654
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.10 E-value=0.68 Score=26.55 Aligned_cols=68 Identities=9% Similarity=-0.036 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHcCCC---HHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCC
Q 038114 75 QPDVVLQNYILNMYGKCGS---LEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145 (170)
Q Consensus 75 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 145 (170)
+.++..+..+-.++...++ .++|..+|++..+.+. -++.....+-..+...|++++|...|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp---~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP---YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3466777777777754443 7999999998876533 345666777788899999999999999998764
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.79 E-value=1.4 Score=31.29 Aligned_cols=114 Identities=8% Similarity=-0.046 Sum_probs=76.8
Q ss_pred cchhHhH-H-Hhhhccc--CC---H---HHHHHHHHHHHhhCCCCcc---hhhHHHHHHHhhc-----ccchHHHHHHHH
Q 038114 6 KTQLRFT-F-YNSQPIQ--NL---Y---NEALVAFDFLQNNTNFRIR---PSTYACLISTCSS-----LRSLQLGRKVHD 67 (170)
Q Consensus 6 ~~~~~~~-l-i~~~~~~--~~---~---~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~-----~~~~~~a~~~~~ 67 (170)
.+...|. + ..++... |. . ..|...+++. -.+-|+ -..|..+-..|.. .|+.++|.+.|+
T Consensus 152 ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerA---leLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe 228 (301)
T 3u64_A 152 VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERA---CDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE 228 (301)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHH---HHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHH---HHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence 4566777 4 4444332 22 2 3445555554 223444 4478888888888 499999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHhhcccCCCCCCCChhhHHHHH
Q 038114 68 HILSSKSQPDVVLQNYILNMYGKC-GSLEDARVVSDEMPQRNVIESPDLASWNAII 122 (170)
Q Consensus 68 ~m~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li 122 (170)
+-.+-+-.-+..++...-..+++. |+.+++.+.+++.........|+....|.+-
T Consensus 229 rAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 229 HLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp HHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred HHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 998864322366777777888885 9999999999999887761127766555544
No 229
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=91.46 E-value=0.78 Score=34.94 Aligned_cols=122 Identities=14% Similarity=-0.010 Sum_probs=64.8
Q ss_pred HhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcC---------C---CC
Q 038114 10 RFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK---------S---QP 76 (170)
Q Consensus 10 ~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~---~~ 76 (170)
.|- .+.-+.+.|+.+.|..+|++. ... |+...+.. .|+...+.++ +++.+.+.- . ..
T Consensus 215 lW~~ya~~~~~~~~~~~ar~i~erA-i~~---P~~~~l~~---~y~~~~e~~~---~~~~l~~~~~~~~~~~~~~~~~~~ 284 (493)
T 2uy1_A 215 VYFFYSEYLIGIGQKEKAKKVVERG-IEM---SDGMFLSL---YYGLVMDEEA---VYGDLKRKYSMGEAESAEKVFSKE 284 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-HHH---CCSSHHHH---HHHHHTTCTH---HHHHHHHHTC----------CHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-HhC---CCcHHHHH---HHHhhcchhH---HHHHHHHHHHhhccchhhhhcccc
Confidence 344 456667789999999999998 554 44332221 1222111111 122222210 0 11
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 038114 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 77 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
...+|-..++...+.+.++.|..+|+.....+. .+.+....+.+...+ .++.+.|..+|+...+.
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~--~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIELGNEGV--GPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLK 349 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCC--ChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHH
Confidence 134566666666677778888888887722111 122222223333333 23688888888877664
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.18 E-value=1.9 Score=27.49 Aligned_cols=111 Identities=5% Similarity=0.022 Sum_probs=73.4
Q ss_pred hhHhH-HHhhhcccCCH------HHHHHHHHHHHhhCCCCcchh----hHHHHHHHh---hcccchHHHHHHHHHHHhcC
Q 038114 8 QLRFT-FYNSQPIQNLY------NEALVAFDFLQNNTNFRIRPS----TYACLISTC---SSLRSLQLGRKVHDHILSSK 73 (170)
Q Consensus 8 ~~~~~-li~~~~~~~~~------~~a~~~~~~m~~~~~~~p~~~----~~~~li~~~---~~~~~~~~a~~~~~~m~~~~ 73 (170)
..+|- .+.-.-+.|++ ++.+++|++. -. .++|+.. .|--+.--| ...++.+.|.++|..+++.+
T Consensus 13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerA-ia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQA-IE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHH-HH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHH-HH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 33454 57777777888 8888888877 33 4555432 111111111 22378899999999987654
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHH
Q 038114 74 SQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAG 124 (170)
Q Consensus 74 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~ 124 (170)
-.. ..+|-..-..-.+.|+++.|.+++..-...+. +|.. ...+.|..
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~--k~~~-~le~a~~n 137 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA--VPLE-MLEIALRN 137 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--BCHH-HHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC--CcHH-HHHHHHHh
Confidence 455 77888888888889999999999998877666 5543 44444443
No 231
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=91.15 E-value=3.3 Score=30.14 Aligned_cols=45 Identities=9% Similarity=0.002 Sum_probs=21.0
Q ss_pred HHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCC-------hHHHHHHHHHHHh
Q 038114 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN-------ANEAMSLFSEMRD 143 (170)
Q Consensus 96 ~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~-------~~~a~~l~~~m~~ 143 (170)
++.+.++++.+.+. -|...|+.--..+.+.+. ++++++.+.+...
T Consensus 185 eELe~~~k~I~~dp---~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~ 236 (349)
T 3q7a_A 185 SELDWCNEMLRVDG---RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH 236 (349)
T ss_dssp HHHHHHHHHHHHCT---TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC---CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence 45555555544333 233445554444444443 4455555544443
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.13 E-value=1.7 Score=27.44 Aligned_cols=86 Identities=9% Similarity=-0.041 Sum_probs=68.0
Q ss_pred hcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHH
Q 038114 17 QPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED 96 (170)
Q Consensus 17 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 96 (170)
....|+......-+-.+ .-++..+...+......|+-++-.++...+.. +.+|++...-.+-.+|.+-|+..+
T Consensus 71 is~C~NlKrVi~C~~~~------n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~ 143 (172)
T 1wy6_A 71 LDKCQNLKSVVECGVIN------NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERD 143 (172)
T ss_dssp GGGCSCTHHHHHHHHHT------TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHH
T ss_pred cHhhhcHHHHHHHHHHh------cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhh
Confidence 35567777888877777 35666788888888899999988888888644 347777888888889999999999
Q ss_pred HHHHHhhcccCCC
Q 038114 97 ARVVSDEMPQRNV 109 (170)
Q Consensus 97 a~~~~~~m~~~~~ 109 (170)
|.+++.+.-+.|+
T Consensus 144 a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 144 ATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhh
Confidence 9999988888777
No 233
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.95 E-value=1.9 Score=26.96 Aligned_cols=64 Identities=9% Similarity=0.117 Sum_probs=51.8
Q ss_pred CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038114 93 SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCA 159 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~ 159 (170)
+.-+..+-+..+-..++ .|++....+.+.+|-|.+++..|.++|+-.+.+- .+....|..+++-
T Consensus 68 D~wElrrglN~l~~~Dl--VPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDL--VPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSB--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhcccc--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 45556777777778888 8999999999999999999999999998877653 4446678887764
No 234
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=90.56 E-value=5 Score=31.17 Aligned_cols=133 Identities=8% Similarity=0.063 Sum_probs=93.4
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcc-hhhHHHHHHHhhcccc----------hHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038114 20 QNLYNEALVAFDFLQNNTNFRIR-PSTYACLISTCSSLRS----------LQLGRKVHDHILSSKSQPDVVLQNYILNMY 88 (170)
Q Consensus 20 ~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 88 (170)
....++|++.++++ ...+ |+ ...|+.-=.++...++ ++++.+.++.+.+.. +-+..+|+----.+
T Consensus 42 ~~~~eeal~~~~~~-l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQI-LGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHH-HHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-HHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34456779999888 5433 32 2344433333334444 899999999998865 44688888888888
Q ss_pred HcCC--CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCC-ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHh
Q 038114 89 GKCG--SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPS-NANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160 (170)
Q Consensus 89 ~~~~--~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~ 160 (170)
.+.+ +++++.+.++++.+.+. -+...|+.---.+.+.| .++++++.+.++.+.... |...|+..-..+
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~---~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll 188 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADE---RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL 188 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHH
T ss_pred HHcccccHHHHHHHHHHHHhhcc---ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHH
Confidence 8888 77999999999987655 45678888777777788 899999999888765432 444555444443
No 235
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=90.35 E-value=0.005 Score=47.00 Aligned_cols=146 Identities=11% Similarity=0.106 Sum_probs=97.0
Q ss_pred ccchhHhH-HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHH
Q 038114 5 LKTQLRFT-FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNY 83 (170)
Q Consensus 5 ~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 83 (170)
+.+...|. |-.+....+...+|++-|-+. -|+..|.-+|.++.+.|.+++-...+...++. .-++.+=+.
T Consensus 51 ~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDte 121 (624)
T 3lvg_A 51 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETE 121 (624)
T ss_dssp CCCCCCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHH
T ss_pred hCCccHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHH
Confidence 34455677 788888888888777666544 46778889999999999999888777766655 334566788
Q ss_pred HHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC-------------------
Q 038114 84 ILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR------------------- 144 (170)
Q Consensus 84 li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------------------- 144 (170)
|+-+|++.+++.+.++.+. .|+..-...+-.-|...|.++.|.-+|..+..-
T Consensus 122 Li~ayAk~~rL~elEefl~---------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 122 LIFALAKTNRLAELEEFIN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp HHHHHHTSCSSSTTTSTTS---------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTT
T ss_pred HHHHHHhhCcHHHHHHHHc---------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988765433322 344444455556666666666666555544311
Q ss_pred -CCCCCHhhHHHHHHHhcCCCcccc
Q 038114 145 -ELIPDGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 145 -~~~p~~~t~~~ll~~~~~~g~~e~ 168 (170)
...-+..||--+-.+|...+.+..
T Consensus 193 ArKAns~ktWKeV~~ACvd~~EfrL 217 (624)
T 3lvg_A 193 ARKANSTRTWKEVCFACVDGKEFRL 217 (624)
T ss_dssp TTTCCSSCSHHHHTHHHHHSCTTTT
T ss_pred HHhcCChhHHHHHHHHHhCchHHHH
Confidence 113366677777777777666543
No 236
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=90.11 E-value=4.2 Score=29.61 Aligned_cols=141 Identities=10% Similarity=-0.015 Sum_probs=95.6
Q ss_pred cccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhccc-chHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC-C-CH
Q 038114 18 PIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLR-SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC-G-SL 94 (170)
Q Consensus 18 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~-~~ 94 (170)
.+....++|+++++.+ ...+. -+...|+.-=..+...+ .+++++.+++.+.... +-+..+|+----.+.+. + ++
T Consensus 65 ~~~e~se~AL~lt~~~-L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEII-VRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHH-HHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHH-HHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 3445557899999998 54332 12334554444455556 5999999999999875 44678888877777776 6 88
Q ss_pred HHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChH--------HHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCc
Q 038114 95 EDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNAN--------EAMSLFSEMRDRELIPDGLTVRSLLCACTSPSN 165 (170)
Q Consensus 95 ~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~--------~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 165 (170)
+++++.++.+.+... -|...|+.-.-.+.+.|.++ ++++.++++.+.... |...|+..-..+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dp---kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDP---KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp HHHHHHHHHHTSSCT---TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccc
Confidence 999999999987655 35567766554444444444 888999988876533 56666666666655554
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.11 E-value=2.6 Score=25.84 Aligned_cols=83 Identities=11% Similarity=-0.041 Sum_probs=42.4
Q ss_pred cchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHH---HHHHHhhcccCCCCCCC--ChhhHHHHHHHHhCCCCh
Q 038114 57 RSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLED---ARVVSDEMPQRNVIESP--DLASWNAIIAGVASPSNA 131 (170)
Q Consensus 57 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~~~p--~~~~~~~li~~~~~~g~~ 131 (170)
.....+.+-|..-...|. ++..+--.+--++.+..+... +..++++....+. | .....=.+--++.+.|++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~---p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS---KEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC---HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC---cchHHHHHHHHHHHHHHhhhH
Confidence 334444444544444342 455555555555666655444 6666666554432 2 122222333556666777
Q ss_pred HHHHHHHHHHHh
Q 038114 132 NEAMSLFSEMRD 143 (170)
Q Consensus 132 ~~a~~l~~~m~~ 143 (170)
++|.+.++.+.+
T Consensus 91 ~~A~~~~~~lL~ 102 (126)
T 1nzn_A 91 EKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777666654
No 238
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=87.46 E-value=3.5 Score=25.29 Aligned_cols=23 Identities=4% Similarity=0.029 Sum_probs=11.0
Q ss_pred HHHHHHhhcccchHHHHHHHHHH
Q 038114 47 ACLISTCSSLRSLQLGRKVHDHI 69 (170)
Q Consensus 47 ~~li~~~~~~~~~~~a~~~~~~m 69 (170)
..+|.-|...|+.++|.+.++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34444444445555554444444
No 239
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=87.23 E-value=2.4 Score=26.88 Aligned_cols=63 Identities=5% Similarity=-0.002 Sum_probs=30.6
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC--HHHHHHHHhhcccCCC
Q 038114 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS--LEDARVVSDEMPQRNV 109 (170)
Q Consensus 46 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~ 109 (170)
...+|.-|...++.++|.+.++++.... .-+..+..++..++-+.+. .+.+..++..+...++
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 3455555655666666666666653221 1123344444444444321 3445555555555555
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.01 E-value=5.5 Score=33.76 Aligned_cols=116 Identities=10% Similarity=0.006 Sum_probs=73.7
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcc-----------------------hhhHHHHHHHhhcccchHHHHHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIR-----------------------PSTYACLISTCSSLRSLQLGRKVHDHI 69 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-----------------------~~~~~~li~~~~~~~~~~~a~~~~~~m 69 (170)
+-.+|...|++++|.+.|.+. . .|+..+ ..=|.-++..+.+.+.++.+.++-...
T Consensus 848 ~g~~~L~~ge~~~A~~~F~ka-a-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 848 KALIYLKSKEAVKAVRCFKTT-S-LVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHTTCHHHHHHHHHTC-C-CSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHH-h-hhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467778888999999888775 2 122110 112556677777777777777766655
Q ss_pred HhcC-CCC-C--HHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHH
Q 038114 70 LSSK-SQP-D--VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134 (170)
Q Consensus 70 ~~~~-~~~-~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 134 (170)
.+.. -.+ + ...|+.+.+++...|++++|...+-.+..... + ......++...|..|..+.-
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r--~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--K--KSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--C--HHHHHHHHHHHHHHCCHHHH
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--H--HHHHHHHHHHHHhCCChhhh
Confidence 5432 121 1 23688888888888999888888877765443 2 34566666666655554443
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=86.96 E-value=3 Score=26.60 Aligned_cols=59 Identities=14% Similarity=0.026 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhh
Q 038114 91 CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152 (170)
Q Consensus 91 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t 152 (170)
.+++++|.++|+.+....- +. ...|-...+-=.+.|+..+|..++..-...+.+|....
T Consensus 73 i~D~d~aR~vy~~a~~~hK--kF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCK--KF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCT--TB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred hcCHHHHHHHHHHHHHHhH--HH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 3789999999998865444 44 45565556666889999999999998888776665443
No 242
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=86.56 E-value=5 Score=26.75 Aligned_cols=76 Identities=9% Similarity=0.107 Sum_probs=53.6
Q ss_pred CCCCcchhhHHHHHHHhhc--ccchHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCC
Q 038114 37 TNFRIRPSTYACLISTCSS--LRSLQLGRKVHDHILSSKSQPD-VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESP 113 (170)
Q Consensus 37 ~~~~p~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p 113 (170)
...+-|+.-....|.-.-. .+...++..+|..|...|+.-. ...|-..-..+...|++++|.++|..-.+.+- +|
T Consensus 71 ~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A--~P 148 (202)
T 3esl_A 71 ETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC--RP 148 (202)
T ss_dssp GGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--BS
T ss_pred ccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--cc
Confidence 3455666644444443322 4446688889999988876544 77888888888889999999999998777776 55
Q ss_pred C
Q 038114 114 D 114 (170)
Q Consensus 114 ~ 114 (170)
-
T Consensus 149 ~ 149 (202)
T 3esl_A 149 Y 149 (202)
T ss_dssp H
T ss_pred H
Confidence 3
No 243
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=84.88 E-value=4 Score=23.60 Aligned_cols=66 Identities=17% Similarity=0.132 Sum_probs=46.4
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHH
Q 038114 64 KVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSL 137 (170)
Q Consensus 64 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l 137 (170)
.++..+.+.|+- +......+-. .......+.|.++++.+..+|. ..|..++.++...|+...|..+
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~------~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDIQR-AGSGSRRDQARQLIIDLETRGS------QALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCT------THHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHh-ccCCChHHHHHHHHHHHHHcCh------HHHHHHHHHHHHcCcHHHHHHH
Confidence 477777777743 4444444322 1122468899999999998888 7999999999888887776554
No 244
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=84.22 E-value=7.2 Score=26.00 Aligned_cols=77 Identities=8% Similarity=-0.043 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHHc--CCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHh
Q 038114 74 SQPDVVLQNYILNMYGK--CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL 151 (170)
Q Consensus 74 ~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~ 151 (170)
..-|+.-....|..--. +++...+.++|..|...|+- .--..-|......+...|++.+|..+|+.-.+.+-+|-..
T Consensus 73 YkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG-~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~r 151 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIG-TKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNR 151 (202)
T ss_dssp GTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSS-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred ccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 35566555555554444 66688999999999988873 3344568888889999999999999999999888888543
No 245
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=83.76 E-value=7 Score=25.48 Aligned_cols=51 Identities=8% Similarity=0.010 Sum_probs=42.9
Q ss_pred HHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccC
Q 038114 51 STCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQR 107 (170)
Q Consensus 51 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 107 (170)
......|+++.|.++.+++ -+...|..|-....+.|+++-|+++|...++.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~ 63 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHSF 63 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH
Confidence 3445679999999998776 36889999999999999999999999987654
No 246
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.96 E-value=3.1 Score=29.16 Aligned_cols=55 Identities=15% Similarity=0.079 Sum_probs=38.1
Q ss_pred HhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccC
Q 038114 52 TCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQR 107 (170)
Q Consensus 52 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 107 (170)
...+.|+++++.+....-++.. +-|...-..|+..+|-.|+|+.|.+=++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4456677777777777666654 556777777888888888888887766655543
No 247
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=82.35 E-value=5 Score=24.56 Aligned_cols=83 Identities=12% Similarity=-0.058 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchH---HHHHHHHHHHhcCCCC-CHH-HHHHHHHHHHcCCCHHH
Q 038114 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQ---LGRKVHDHILSSKSQP-DVV-LQNYILNMYGKCGSLED 96 (170)
Q Consensus 22 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~~-~~~-~~~~li~~~~~~~~~~~ 96 (170)
....+.+-|... ...|. |+..+--.+--+++++.... .+..++.++.+.+ .| +.. -.=.|--++.|.|+++.
T Consensus 16 ~l~~~~~~y~~e-~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSE-KAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHH-HHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHH-hccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 344555555555 44343 44444333334444444433 3666677666553 22 222 22233346667777777
Q ss_pred HHHHHhhcccC
Q 038114 97 ARVVSDEMPQR 107 (170)
Q Consensus 97 a~~~~~~m~~~ 107 (170)
|.+.++.+.+.
T Consensus 93 A~~~~~~lL~~ 103 (126)
T 1nzn_A 93 ALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777766543
No 248
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=81.89 E-value=12 Score=26.92 Aligned_cols=134 Identities=6% Similarity=-0.067 Sum_probs=73.1
Q ss_pred ccchhHhH-HHhhhcccC--CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccc-hHHHHHHHHHHHhcCCCCCHHH
Q 038114 5 LKTQLRFT-FYNSQPIQN--LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRS-LQLGRKVHDHILSSKSQPDVVL 80 (170)
Q Consensus 5 ~~~~~~~~-li~~~~~~~--~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~ 80 (170)
.++...|+ ---.+.+.+ .+++++.+++.+ ..... -|...|+----+....|. ++++.+.+..+.+.. +-|...
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~-l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SA 181 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARF-LEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSS 181 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-HHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHH
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHH-HHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHH
Confidence 34455565 222222333 477788888777 44322 233344433334444555 477777777777664 335666
Q ss_pred HHHHHHHHHcC--------------CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCC-----------CChHHHH
Q 038114 81 QNYILNMYGKC--------------GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP-----------SNANEAM 135 (170)
Q Consensus 81 ~~~li~~~~~~--------------~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~a~ 135 (170)
|+-.-..+.+. +.++++.+.+........ -|...|+-+--.+.+. +.+++++
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P---~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el 258 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP---NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL 258 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhccCccccchHHHHHHHHHH
Confidence 66555554443 346677777776665433 3455555443333333 3467777
Q ss_pred HHHHHHHhC
Q 038114 136 SLFSEMRDR 144 (170)
Q Consensus 136 ~l~~~m~~~ 144 (170)
+.++++.+.
T Consensus 259 ~~~~elle~ 267 (331)
T 3dss_A 259 ESCKELQEL 267 (331)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 777777644
No 249
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.96 E-value=7.3 Score=29.07 Aligned_cols=57 Identities=2% Similarity=-0.194 Sum_probs=31.5
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCC--CCcchhhHHHHHHHhhcccchHHHHHHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTN--FRIRPSTYACLISTCSSLRSLQLGRKVHDHIL 70 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 70 (170)
+...|.+.|+++.|.+.|.++ .... ...-...+-.+|+.+...+++..+........
T Consensus 137 la~~~~~~Gd~~~A~~~~~~~-~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 137 LGEYYAQIGDKDNAEKTLGKS-LSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp HHHHHHHHCCCTTHHHHHHHH-HHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 455566666666666666666 4322 22233345555666666666666666665554
No 250
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=79.11 E-value=2.2 Score=28.33 Aligned_cols=91 Identities=8% Similarity=-0.045 Sum_probs=52.6
Q ss_pred HhHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhh--HHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHH--HHHHH
Q 038114 10 RFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPST--YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL--QNYIL 85 (170)
Q Consensus 10 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li 85 (170)
-++.+...++.|+.+-+..+++.+ ...|..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+
T Consensus 9 g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l 83 (241)
T 1k1a_A 9 GDTPLHIAVVQGNLPAVHRLVNLF-QQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAA 83 (241)
T ss_dssp TCCHHHHHHHTTCHHHHHHHHHHH-HHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHHH-HhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHH
Confidence 344566677789998888888877 66666554431 123344444556665 4555556665543221 12334
Q ss_pred HHHHcCCCHHHHHHHHhhcc
Q 038114 86 NMYGKCGSLEDARVVSDEMP 105 (170)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~ 105 (170)
...++.|+.+-+..+++...
T Consensus 84 ~~A~~~~~~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 84 HLACEHRSPTCLRALLDSAA 103 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHcCCHHHHHHHHHcCC
Confidence 44556677777666666544
No 251
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=79.05 E-value=2 Score=26.66 Aligned_cols=49 Identities=16% Similarity=0.072 Sum_probs=32.0
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCcccc
Q 038114 120 AIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 120 ~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~ 168 (170)
.++..+...+..-.|.++++.+++.+-..+..|.-.-|+.+...|.+..
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 3455555555566677777777777666677776666777766665543
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=78.77 E-value=3.8 Score=25.39 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=32.7
Q ss_pred ccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccC
Q 038114 56 LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQR 107 (170)
Q Consensus 56 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 107 (170)
..+...+..++.++.+.+..-....+=-|--++.|.|+++.|.+..+.+.+.
T Consensus 56 ~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 56 VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3456677777777776542222334444555677788888888877776654
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.69 E-value=7.2 Score=25.15 Aligned_cols=65 Identities=6% Similarity=-0.073 Sum_probs=38.9
Q ss_pred cchhHhH-H--HhhhcccCCHHHHHHHHHHHHhhCCCCcch-------hhHHHHHHHhhcccchHHHHHHHHHHH
Q 038114 6 KTQLRFT-F--YNSQPIQNLYNEALVAFDFLQNNTNFRIRP-------STYACLISTCSSLRSLQLGRKVHDHIL 70 (170)
Q Consensus 6 ~~~~~~~-l--i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~ 70 (170)
|....|+ + +..+...|.++.|.-+.+.+....+..|+. .++..+-.++...+++..|...|++..
T Consensus 16 ~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 16 PRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp -----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3344566 3 777788888888888777752222222331 245556666777788888888888754
No 254
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=78.48 E-value=0.16 Score=39.08 Aligned_cols=84 Identities=12% Similarity=0.124 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 038114 77 DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSL 156 (170)
Q Consensus 77 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~l 156 (170)
.+.+|+.|-+++.+.+.+.+|.+.|-+-. |+..|..+|....+.|.+++-...+..-++..-.| ..=+.|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~--------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteL 122 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD--------DPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETEL 122 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCS--------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCC--------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHH
Confidence 35578888888888888877776664422 33578888888888888888888775444443333 334578
Q ss_pred HHHhcCCCccccCC
Q 038114 157 LCACTSPSNVLYLD 170 (170)
Q Consensus 157 l~~~~~~g~~e~~~ 170 (170)
+-+|++.+++.++|
T Consensus 123 i~ayAk~~rL~elE 136 (624)
T 3lvg_A 123 IFALAKTNRLAELE 136 (624)
T ss_dssp HHHHHTSCSSSTTT
T ss_pred HHHHHhhCcHHHHH
Confidence 88888888877754
No 255
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=78.39 E-value=13 Score=25.29 Aligned_cols=88 Identities=16% Similarity=0.056 Sum_probs=60.3
Q ss_pred HhhhcccCCHHHHHHHHHHHHhh-CCCCc----chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNN-TNFRI----RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMY 88 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~-~~~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 88 (170)
++.+....++++|..+.++.+.. .+.++ ........|..-.....-..+..+.+++.. .+++......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 88999999999999999988322 12322 112333444444445555666666666633 55677777888999
Q ss_pred HcCCCHHHHHHHHhhc
Q 038114 89 GKCGSLEDARVVSDEM 104 (170)
Q Consensus 89 ~~~~~~~~a~~~~~~m 104 (170)
.+-|..++|.++|-+.
T Consensus 102 ~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHH
Confidence 9999999999998754
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.21 E-value=6.6 Score=27.50 Aligned_cols=122 Identities=6% Similarity=-0.024 Sum_probs=81.4
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHcC
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK--SQPDVVLQNYILNMYGKC 91 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~ 91 (170)
+....+.|+++++++....- .+. -+-|...=..++..+|-.|+++.|.+-++...+.. ..|...+|-.+|.+-.
T Consensus 4 ~~~ll~~g~L~~al~~~~~~-VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~-- 79 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEA-IKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ-- 79 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHH-HHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH--
T ss_pred HHHHHhCCCHHHHHHHHHHH-HHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHH--
Confidence 45677889999999977665 332 24577788889999999999999999888887642 3344556666666532
Q ss_pred CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHh--CCCChHHHHHHHHHHHhC
Q 038114 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVA--SPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~l~~~m~~~ 144 (170)
.=.++|..=...++. .....-...++.+.. ..|+.++|.++-.+..+.
T Consensus 80 ----~R~~vfaG~~~P~~~-g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 80 ----ARKDFAQGAATAKVL-GENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ----HHHHHTTSCCCEECC-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHcCCCCCCCC-CCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 124566654444442 222234455555554 458999999988877543
No 257
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=78.15 E-value=2.2 Score=26.11 Aligned_cols=48 Identities=23% Similarity=0.070 Sum_probs=33.1
Q ss_pred HHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCcccc
Q 038114 121 IIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVLY 168 (170)
Q Consensus 121 li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e~ 168 (170)
++..+...+..-.|.++++.+++.+...+..|.-..|+.+...|.+..
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEE
Confidence 344444555666778888888777767777777777777777776544
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.46 E-value=20 Score=26.71 Aligned_cols=99 Identities=10% Similarity=0.018 Sum_probs=71.8
Q ss_pred chhhHHHHHHHhhcccchHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhccc---CCCCCCCChh
Q 038114 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSS--KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ---RNVIESPDLA 116 (170)
Q Consensus 42 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~p~~~ 116 (170)
-..+...+-..+.+.|+++.|.+.|.+++.. +..--...+-.+|+.+...+++..+.....+... .+. .|+..
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~--d~~~~ 207 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG--DWERR 207 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC--CTHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC--CHHHH
Confidence 3447788889999999999999999999875 3233366888889999999999999998887643 222 23322
Q ss_pred ----hHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 038114 117 ----SWNAIIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 117 ----~~~~li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
.|..+ .+...+++..|-..|.+....
T Consensus 208 ~~lk~~~gl--~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 208 NRYKTYYGI--HCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHH--GGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHhChHHHHHHHHHHHhcc
Confidence 22322 234568899999988876543
No 259
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=76.32 E-value=14 Score=26.97 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCC--hHHHHHHHHHHHhCCCCCCHhhHHH
Q 038114 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN--ANEAMSLFSEMRDRELIPDGLTVRS 155 (170)
Q Consensus 80 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~l~~~m~~~~~~p~~~t~~~ 155 (170)
..+.+|.-|...++.++|.+.++++....+ .+ .....++..++-+.++ .+.+..++..+...|+-+.......
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~f--hh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~G 293 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHF--HH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 293 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTC--HH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcc--hH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 467888999999999999999999986544 22 3456666777776543 4667888888888876544444333
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.49 E-value=10 Score=22.37 Aligned_cols=88 Identities=10% Similarity=0.082 Sum_probs=62.2
Q ss_pred cchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHH
Q 038114 57 RSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136 (170)
Q Consensus 57 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 136 (170)
...++|..+-+.+...+- ...+--+-+..+.+.|++++|..+.+.+- -||...|-++-. .+.|..+++..
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c------~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP------WPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC------CGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC------CchHHHHHHHHH--HhcccHHHHHH
Confidence 346788888888877653 33343444556778899999999888766 477788877654 47788888888
Q ss_pred HHHHHHhCCCCCCHhhHHH
Q 038114 137 LFSEMRDRELIPDGLTVRS 155 (170)
Q Consensus 137 l~~~m~~~~~~p~~~t~~~ 155 (170)
-+..+..+| .|....|..
T Consensus 90 rL~~la~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 90 RLAGLGGSS-DPALADFAA 107 (115)
T ss_dssp HHHHHHTCS-SHHHHHHHH
T ss_pred HHHHHHhCC-CHHHHHHHH
Confidence 888887776 445555543
No 261
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=74.43 E-value=9.6 Score=21.63 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHH
Q 038114 62 GRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAM 135 (170)
Q Consensus 62 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 135 (170)
...++..+.+.|+- +..-+..+-. .....++|.++++.+..+|. ..|..++.++...+....|.
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~------~af~~F~~aL~~~~~~~La~ 87 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDN------DSYVSFYNALLHEGYKDLAA 87 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCH------HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCH------HHHHHHHHHHHHcCHHHHHH
Confidence 34566667666643 3444444333 24567777778877777766 67777777777766554443
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=74.43 E-value=11 Score=22.27 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=59.5
Q ss_pred cchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHH
Q 038114 57 RSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS 136 (170)
Q Consensus 57 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 136 (170)
...++|..+-+.+...+- ...+--+-+..+.+.|++++|..+.+.+- -||...|-++-. .+.|..+++..
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c------~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA------YPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC------CGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC------CchHHHHHHHHH--HhcccHHHHHH
Confidence 346778888888876653 33333344456778899999999888766 477788777654 36677888887
Q ss_pred HHHHHHhCCCCCCHhhHHH
Q 038114 137 LFSEMRDRELIPDGLTVRS 155 (170)
Q Consensus 137 l~~~m~~~~~~p~~~t~~~ 155 (170)
-+..+..+| .|....|..
T Consensus 91 rL~~la~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 91 RLNRLARSQ-DPRIQTFVN 108 (116)
T ss_dssp HHHHHTTCC-CHHHHHHHH
T ss_pred HHHHHHhCC-CHHHHHHHH
Confidence 777777666 444444443
No 263
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=73.94 E-value=18 Score=24.52 Aligned_cols=50 Identities=8% Similarity=0.088 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHhhcccCCC
Q 038114 60 QLGRKVHDHILSSKSQPD-VVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 60 ~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 109 (170)
+++..+|..|...|+.-. ...|-..-..+-..|++++|.++|..-.+.+-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 355567777766655433 55666666666667777777777766555555
No 264
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=73.47 E-value=3.2 Score=25.54 Aligned_cols=34 Identities=12% Similarity=0.037 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCC
Q 038114 131 ANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPS 164 (170)
Q Consensus 131 ~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g 164 (170)
.-.|.++++.+++.+...+..|.-.-|+.+...|
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444444444444444444444443333
No 265
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=72.83 E-value=4.8 Score=22.11 Aligned_cols=61 Identities=16% Similarity=0.128 Sum_probs=34.1
Q ss_pred cccCCCCCCCChhhHHHHHHHHhCCC-ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccc
Q 038114 104 MPQRNVIESPDLASWNAIIAGVASPS-NANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 104 m~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e 167 (170)
+++.|+ +++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|.+.
T Consensus 8 l~~~g~--~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 8 LKKAGL--KVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHTTC--CCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHcCC--CcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 344555 444333 33445554443 44556667777666665666666666666666665543
No 266
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=72.62 E-value=24 Score=25.39 Aligned_cols=135 Identities=5% Similarity=0.001 Sum_probs=89.5
Q ss_pred HhhhcccCCHH-HHHHHHHHHHhhCCCCcchh-hHHH---HHHHhhcc-------cchHHHHHHHHHHHhcCCCCCHHHH
Q 038114 14 YNSQPIQNLYN-EALVAFDFLQNNTNFRIRPS-TYAC---LISTCSSL-------RSLQLGRKVHDHILSSKSQPDVVLQ 81 (170)
Q Consensus 14 i~~~~~~~~~~-~a~~~~~~m~~~~~~~p~~~-~~~~---li~~~~~~-------~~~~~a~~~~~~m~~~~~~~~~~~~ 81 (170)
+....+.|.++ +|+.+++.+ ... .|+-. .|+. ++....+. ..++++..+++.+.... +-+..+|
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~-L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW 111 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQI-LGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTW 111 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHH-HTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHH-HHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHH
Confidence 33344555555 789999998 543 34333 3332 23332221 12678888999888764 4468888
Q ss_pred HHHHHHHHcCC--CHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCC-hHHHHHHHHHHHhCCCCCCHhhHHHH
Q 038114 82 NYILNMYGKCG--SLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN-ANEAMSLFSEMRDRELIPDGLTVRSL 156 (170)
Q Consensus 82 ~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~l~~~m~~~~~~p~~~t~~~l 156 (170)
+----.+.+.+ .++++..+++.+.+... -|...|+.---.+...|. ++++++.+.++.+.... |...|+..
T Consensus 112 ~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp---rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R 185 (331)
T 3dss_A 112 HHRCWLLSRLPEPNWARELELCARFLEADE---RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYR 185 (331)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHH
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHH
Confidence 88777777777 48999999999987655 456778777777777777 68999999998876533 44444443
No 267
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=72.60 E-value=18 Score=25.77 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=49.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCC--hHHHHHHHHHHHhCCCCCCH
Q 038114 80 LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSN--ANEAMSLFSEMRDRELIPDG 150 (170)
Q Consensus 80 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~l~~~m~~~~~~p~~ 150 (170)
-.+.+|.-|...|+.++|.+.++++..... . ....+.++..++-+.++ .+.+..++..+.+.|+-+..
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f--~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHF--H-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGG--H-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcc--h-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 456788889999999999999999985544 2 23456677777777543 56677888888877754433
No 268
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=72.30 E-value=27 Score=25.86 Aligned_cols=134 Identities=9% Similarity=-0.003 Sum_probs=88.7
Q ss_pred hhHhHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchh---hHHHHHHHhhccc-chHHHHHHHHHHH----hcCCC-CCH
Q 038114 8 QLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPS---TYACLISTCSSLR-SLQLGRKVHDHIL----SSKSQ-PDV 78 (170)
Q Consensus 8 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~~-~~~~a~~~~~~m~----~~~~~-~~~ 78 (170)
...+.|..-|.+.|+.++..+++...+.-.+.-|... ....+|..+.... ..+.-.++..+.. +.... ...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445588999999999999999998822223333332 5678888887643 3333334444333 32111 122
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCC-----hhhHHHHHHHHhCCCChHHHHHHHHHHHh
Q 038114 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPD-----LASWNAIIAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 79 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 143 (170)
.+=.-|...|...|++.+|.+++..+.+.-. +.| ...|-.-+..|...+++.++...+..-..
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~--~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELK--KLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT--TSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--ccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 2344788999999999999998887764322 212 34466667888999999999999887654
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.05 E-value=6.4 Score=23.21 Aligned_cols=80 Identities=11% Similarity=-0.061 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 038114 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100 (170)
Q Consensus 21 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 100 (170)
...++|..+-+.+ ...+. ...+--+-+....+.|++++|..+.+.+ ..||...|-+| +-.|.|..++++.-
T Consensus 20 H~HqEA~tIAdwL-~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~r 90 (115)
T 2uwj_G 20 HCHEEALCIAEWL-ERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFAL--CEWHLGLGAALDRR 90 (115)
T ss_dssp TCHHHHHHHHHHH-HHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHH--HHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHH-HhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHH
Confidence 4567777787887 55544 2222233344566778888887765544 37788877776 34567777777777
Q ss_pred HhhcccCCC
Q 038114 101 SDEMPQRNV 109 (170)
Q Consensus 101 ~~~m~~~~~ 109 (170)
+..+...|-
T Consensus 91 L~~la~sg~ 99 (115)
T 2uwj_G 91 LAGLGGSSD 99 (115)
T ss_dssp HHHHHTCSS
T ss_pred HHHHHhCCC
Confidence 767766655
No 270
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=71.57 E-value=18 Score=29.39 Aligned_cols=55 Identities=13% Similarity=-0.026 Sum_probs=47.4
Q ss_pred HHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 038114 50 ISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMP 105 (170)
Q Consensus 50 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 105 (170)
...|...|+++.|+++-++..... +-+-.+|-.|..+|.+.|+++.|+-.+..+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 444667899999999999998863 4458999999999999999999999999875
No 271
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=71.49 E-value=3.4 Score=25.81 Aligned_cols=41 Identities=7% Similarity=-0.017 Sum_probs=19.8
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCC
Q 038114 68 HILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 68 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 109 (170)
.+.+.|+.+++. --.++..+...+.+-.|.++++.+++.+.
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~ 52 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFP 52 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCT
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCC
Confidence 344555555442 22333444444444555556666555444
No 272
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=71.28 E-value=17 Score=23.04 Aligned_cols=71 Identities=8% Similarity=0.040 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCH
Q 038114 76 PDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDG 150 (170)
Q Consensus 76 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~ 150 (170)
-|+.-....|..--.+.+ +.++|..|...|+- .-...-|......+...|++.+|.++|+.-.+.+-+|-.
T Consensus 66 nD~RyLklWl~ya~~~~d---p~~if~~L~~~~IG-~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 66 NDPRFISYCLKFAEYNSD---LHQFFEFLYNHGIG-TLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp TCHHHHHHHHHHHTTBSC---HHHHHHHHHTTTTT-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCCc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 344444444433333322 66677777666663 233445666667777777777777777777777666643
No 273
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.36 E-value=27 Score=26.19 Aligned_cols=145 Identities=11% Similarity=-0.012 Sum_probs=89.3
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhC--CCCcc---hhhHHHHHHHhhcccchHHHHHHHHHHHh----cCCCCC--HHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNT--NFRIR---PSTYACLISTCSSLRSLQLGRKVHDHILS----SKSQPD--VVLQ 81 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~--~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~--~~~~ 81 (170)
|...+-..|++.+|..++..+ ... |.-.. ...+..-++.|...+++..|..+...... ....|+ ...|
T Consensus 143 La~i~e~~g~~~eA~~iL~~l-~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 143 LVEIKKEEGKIDEAADILCEL-QVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH-HHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH-HHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 678888999999999999998 432 22111 23677788889999999999999988743 222332 3466
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcccC-CCCCCCChhh-----HHHHHHHHh-CCCChHHHHHHHHHHHhCCCCCCHhhHH
Q 038114 82 NYILNMYGKCGSLEDARVVSDEMPQR-NVIESPDLAS-----WNAIIAGVA-SPSNANEAMSLFSEMRDRELIPDGLTVR 154 (170)
Q Consensus 82 ~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~p~~~~-----~~~li~~~~-~~g~~~~a~~l~~~m~~~~~~p~~~t~~ 154 (170)
...+..+...+++.+|.+.|.+.-.. .. .-|... +..++.... ..+ ..--.+..........++...|.
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~~~~~~--~~d~~~~~~~L~~~v~~~iLa~~~--~~~~~ll~~~~~~~~~~~l~~~~ 297 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIYQTDAI--KSDEAKWKPVLSHIVYFLVLSPYG--NLQNDLIHKIQNDNNLKKLESQE 297 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHSSCS--STTHHHHHSHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcccc--cCCHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHhhcccccccHHHH
Confidence 77788888899999998888776432 11 122222 222222222 222 22222333333333345667777
Q ss_pred HHHHHhcC
Q 038114 155 SLLCACTS 162 (170)
Q Consensus 155 ~ll~~~~~ 162 (170)
.|+++|..
T Consensus 298 ~L~k~f~~ 305 (445)
T 4b4t_P 298 SLVKLFTT 305 (445)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777753
No 274
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=69.36 E-value=17 Score=22.19 Aligned_cols=69 Identities=10% Similarity=0.075 Sum_probs=48.6
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhccc--chHHHHHHHHHHHhcCCCCCHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLR--SLQLGRKVHDHILSSKSQPDVVLQNY 83 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ 83 (170)
++.-|...|+.++|.+.++++ ....+ ....+..++..+.-+.+ ..+.+..++..+...|+.+.......
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL-~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~G 83 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKEL-EVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 83 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH-TCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh-CCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 789999999999999999999 53322 23345566666776653 35778888888888876654444333
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=69.16 E-value=19 Score=22.80 Aligned_cols=53 Identities=13% Similarity=0.016 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCC
Q 038114 60 QLGRKVHDHILSSKSQPD-VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPD 114 (170)
Q Consensus 60 ~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~ 114 (170)
+++..+|..|...|+.-. ...|-..-..+-..|++++|.++|..-.+.+- +|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A--~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA--EPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--BSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--ccH
Confidence 457899999999887554 77889999999999999999999998888777 664
No 276
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=68.91 E-value=5.1 Score=25.57 Aligned_cols=38 Identities=8% Similarity=-0.004 Sum_probs=20.1
Q ss_pred HHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccC
Q 038114 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQR 107 (170)
Q Consensus 69 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 107 (170)
+.+.|+.++. .--.++..+...+.+-.|.++++.+++.
T Consensus 24 L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 24 LRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHH
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 3445555544 3344445555555555566666666544
No 277
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=68.00 E-value=21 Score=22.85 Aligned_cols=60 Identities=5% Similarity=-0.060 Sum_probs=42.8
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHhcCCCC--CHHHHHHHHH-H-----HHcCCCHHHHHHHHhhccc
Q 038114 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQP--DVVLQNYILN-M-----YGKCGSLEDARVVSDEMPQ 106 (170)
Q Consensus 46 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~m~~ 106 (170)
|..-+..+-. |++-+|.++++......-.+ ....|-.||. . ..+.|++..|..++.+...
T Consensus 36 ~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3333444433 89999999999998765555 5677888888 2 3357999999999887643
No 278
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=67.90 E-value=13 Score=20.31 Aligned_cols=61 Identities=7% Similarity=0.134 Sum_probs=39.0
Q ss_pred HHHHhhCCCCcchhhHHHHHHHhhccc-chHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 038114 31 DFLQNNTNFRIRPSTYACLISTCSSLR-SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS 93 (170)
Q Consensus 31 ~~m~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 93 (170)
+.+ +..|++++..- ..++......+ ..-.+.++++.+.+.+...+..|--..|+.+...|-
T Consensus 6 ~~l-~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TAL-KKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHH-HHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHH-HHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 446 67777777654 34555655554 456677888888777666666666666666666554
No 279
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=67.83 E-value=21 Score=22.88 Aligned_cols=71 Identities=8% Similarity=-0.016 Sum_probs=44.0
Q ss_pred CCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCC
Q 038114 39 FRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPD-VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPD 114 (170)
Q Consensus 39 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~ 114 (170)
.+-|+.-....|.-.-.. +.+..+|..|...|+.-. ...|-..-..+-..|++++|.+||..-.+.+- +|-
T Consensus 59 YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A--~P~ 130 (164)
T 2wvi_A 59 YYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA--EPL 130 (164)
T ss_dssp GTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--BSH
T ss_pred hccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcH
Confidence 444555444444322222 345567888877766443 66777777777777888888888877766666 554
No 280
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=67.45 E-value=18 Score=22.17 Aligned_cols=121 Identities=10% Similarity=-0.035 Sum_probs=59.6
Q ss_pred hhHhHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHH--HHHHH
Q 038114 8 QLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL--QNYIL 85 (170)
Q Consensus 8 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li 85 (170)
....+.+...++.|+.+.+..+++.- ...-...+..-.+. +...+..|+.+ +.+.+.+.|..++... -.+.+
T Consensus 6 ~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L 79 (165)
T 3twr_A 6 SEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTP-LHFAAGYNRVS----VVEYLLQHGADVHAKDKGGLVPL 79 (165)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCTTTTCCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHH
T ss_pred chhhHHHHHHHHhCCHHHHHHHHHcC-CCCccccccCCCCH-HHHHHHcChHH----HHHHHHhcCCCCCccCCCCCCHH
Confidence 33444556667778887777666543 21111122222233 34444556655 5555666666554322 12344
Q ss_pred HHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHH
Q 038114 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138 (170)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~ 138 (170)
...++.|+.+-+.-+++.-...+ .+|..-++.+.. .++.|+.+-+..++
T Consensus 80 ~~A~~~~~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~-A~~~~~~~~v~~Ll 128 (165)
T 3twr_A 80 HNACSYGHYEVAELLVKHGAVVN---VADLWKFTPLHE-AAAKGKYEICKLLL 128 (165)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTT---CCCTTCCCHHHH-HHHTTCHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHhCCCCCC---CcCCCCCCHHHH-HHHcCCHHHHHHHH
Confidence 55667788776666665322111 122233334433 35557766554444
No 281
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=67.16 E-value=3.4 Score=26.01 Aligned_cols=40 Identities=8% Similarity=0.159 Sum_probs=17.3
Q ss_pred HHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCC
Q 038114 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 69 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 109 (170)
+.+.|+.+++ .--.++..+...+.+-.|.++++.+++.+.
T Consensus 18 l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~ 57 (150)
T 2xig_A 18 IKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDK 57 (150)
T ss_dssp HHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHST
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCC
Confidence 4445554433 223334444444444555555555554433
No 282
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=67.06 E-value=59 Score=27.67 Aligned_cols=117 Identities=9% Similarity=-0.064 Sum_probs=68.4
Q ss_pred HHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccC----CCC-------------
Q 038114 48 CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQR----NVI------------- 110 (170)
Q Consensus 48 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~------------- 110 (170)
.++..+...+..+.+.++.... +-++...=.+-.+|..+|++++|.+.|.+.... +..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3444455555565555443322 223433333445677889999999999865311 000
Q ss_pred ---CCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC-CCC-CC--HhhHHHHHHHhcCCCccccC
Q 038114 111 ---ESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR-ELI-PD--GLTVRSLLCACTSPSNVLYL 169 (170)
Q Consensus 111 ---~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~-p~--~~t~~~ll~~~~~~g~~e~~ 169 (170)
...-..-|..++..+.+.+.++.+.++-..-.+. +-. ++ ...|..+++++...|++|++
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 0111234788888888888888888776544332 222 21 12478888888888888765
No 283
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=66.68 E-value=21 Score=22.46 Aligned_cols=70 Identities=10% Similarity=0.075 Sum_probs=49.1
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcc--cchHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSL--RSLQLGRKVHDHILSSKSQPDVVLQNYI 84 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~l 84 (170)
++.-|...|+.++|.+.++++ ....+ ....+..++..+.-+. ...+.+..++..+...|+.+.......+
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL-~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf 86 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKEL-EVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY 86 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH-TCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh-CCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHH
Confidence 799999999999999999999 53322 2334556666677664 3367788888888888766554444333
No 284
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=66.62 E-value=4.1 Score=25.63 Aligned_cols=36 Identities=19% Similarity=0.047 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCcc
Q 038114 131 ANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166 (170)
Q Consensus 131 ~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 166 (170)
.-.|.++++.+.+.+...+..|.-.-|+.+...|.+
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 344555555554444444444444444444444433
No 285
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=65.25 E-value=22 Score=22.02 Aligned_cols=63 Identities=13% Similarity=0.172 Sum_probs=43.3
Q ss_pred HHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCH
Q 038114 30 FDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSL 94 (170)
Q Consensus 30 ~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 94 (170)
-+.+ ++.|.++++.=. .++..+...+..-.|.++++.+.+.+...+..|--.-|+.+...|-+
T Consensus 10 ~~~l-~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 10 LETL-KETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHH-HHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHH-HHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3457 788988887643 33444444566778999999998887666766555555777777654
No 286
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=63.87 E-value=22 Score=21.66 Aligned_cols=62 Identities=8% Similarity=0.139 Sum_probs=41.6
Q ss_pred HHHHhhCCCCcchhhHHHHHHHhhccc-chHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCH
Q 038114 31 DFLQNNTNFRIRPSTYACLISTCSSLR-SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSL 94 (170)
Q Consensus 31 ~~m~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 94 (170)
+.+ ++.|.++++.=. .++......+ ..-.|.++++.+.+.+...+..|--.-|+.+...|-+
T Consensus 7 ~~l-~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 7 SEL-RKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHH-HHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHH-HHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 346 778888887644 3445555555 6778999999999887666765555555777766654
No 287
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=62.69 E-value=7.7 Score=20.20 Aligned_cols=14 Identities=0% Similarity=-0.026 Sum_probs=6.8
Q ss_pred CHHHHHHHHhhccc
Q 038114 93 SLEDARVVSDEMPQ 106 (170)
Q Consensus 93 ~~~~a~~~~~~m~~ 106 (170)
+++.|...|.+++.
T Consensus 35 d~~~A~~~F~~l~~ 48 (59)
T 1oai_A 35 DYTRSAQAFTHLKA 48 (59)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 44555555554443
No 288
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=62.20 E-value=12 Score=27.40 Aligned_cols=23 Identities=0% Similarity=-0.067 Sum_probs=11.1
Q ss_pred HHHHHHhhcccchHHHHHHHHHH
Q 038114 47 ACLISTCSSLRSLQLGRKVHDHI 69 (170)
Q Consensus 47 ~~li~~~~~~~~~~~a~~~~~~m 69 (170)
..+|.-|...|+.++|.+.++++
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL 38 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREM 38 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 34444444445555544444444
No 289
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=61.64 E-value=27 Score=22.00 Aligned_cols=49 Identities=10% Similarity=0.057 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCC
Q 038114 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 59 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 109 (170)
.+.+..++..+.+.|+.-|..--..++....+.| .....+-.++.+.|+
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI 94 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGI 94 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCC
Confidence 3455566666666666655555555555555433 234455666666666
No 290
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=61.46 E-value=27 Score=21.78 Aligned_cols=64 Identities=9% Similarity=0.014 Sum_probs=42.0
Q ss_pred HHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCH
Q 038114 29 AFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSL 94 (170)
Q Consensus 29 ~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 94 (170)
+-+.+ +..|.++++.=. .++......+..-.|.++++.+.+.+...+..|--.-|+.+...|-+
T Consensus 14 ~~~~l-~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 14 LRMSI-KKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHH-HHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHH-HHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 44557 888988877543 34445555566788999999998877666655554555777777654
No 291
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=61.39 E-value=33 Score=24.38 Aligned_cols=46 Identities=13% Similarity=0.173 Sum_probs=25.6
Q ss_pred HHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCC
Q 038114 29 AFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQ 75 (170)
Q Consensus 29 ~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 75 (170)
++..+ ...|+.|...++..++..+++.=.++.+..+|+.+...|..
T Consensus 210 L~~hL-~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~ 255 (331)
T 3qye_A 210 LYNHL-EEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE 255 (331)
T ss_dssp HHHHH-HHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHH-HHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH
Confidence 33444 44555555555666666665555566666666666555433
No 292
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=60.91 E-value=23 Score=25.52 Aligned_cols=67 Identities=10% Similarity=-0.035 Sum_probs=44.6
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcc-cchHHHHHHHHHHHhcCCCCCHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSL-RSLQLGRKVHDHILSSKSQPDVVLQ 81 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~ 81 (170)
++.-|...|+.++|...++++ ..... ....+...+..+.-+. ..-+.+..++..+.+.|+.......
T Consensus 17 ll~Ey~~~~d~~Ea~~ci~el-~~p~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~ 84 (339)
T 1ug3_A 17 IIEEYLHLNDMKEAVQCVQEL-ASPSL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYY 84 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHTT-CCGGG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHc-CCccc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 789999999999999999999 43332 1223444555555442 3456777888888877765444443
No 293
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=60.83 E-value=4.7 Score=24.44 Aligned_cols=35 Identities=6% Similarity=-0.091 Sum_probs=25.0
Q ss_pred cccchHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHH
Q 038114 55 SLRSLQLGRKVHDHILSSKSQ-PDVVLQNYILNMYG 89 (170)
Q Consensus 55 ~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~ 89 (170)
....++.|.+.+..|++.-+. -.+..||.+|..+-
T Consensus 39 ~~~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk 74 (120)
T 1q2z_A 39 ETPYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQ 74 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 335678888888888775433 25788998888764
No 294
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=60.19 E-value=32 Score=24.68 Aligned_cols=78 Identities=10% Similarity=0.092 Sum_probs=48.0
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCC-hhhH--HHHHHH----HhCCCChHHHHHH
Q 038114 65 VHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPD-LASW--NAIIAG----VASPSNANEAMSL 137 (170)
Q Consensus 65 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~~~--~~li~~----~~~~g~~~~a~~l 137 (170)
++..+.+.|+.|...++.=++..+.+.=.++.+.++++.+...|. +.. ...| -+++.. .....++++...+
T Consensus 231 L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~--~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~ 308 (345)
T 2qfz_A 231 VHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPD--GFSHFHLYVCAAFLVRWRKEILEEKDFQELLLF 308 (345)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTT--TTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 666677777777777777777777777777788888887776655 433 2222 222222 1224677777777
Q ss_pred HHHHHhC
Q 038114 138 FSEMRDR 144 (170)
Q Consensus 138 ~~~m~~~ 144 (170)
+..+-..
T Consensus 309 L~~~p~~ 315 (345)
T 2qfz_A 309 LQNLPTA 315 (345)
T ss_dssp HTSCSCT
T ss_pred HHcCCCc
Confidence 7655443
No 295
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=60.00 E-value=28 Score=21.53 Aligned_cols=23 Identities=9% Similarity=0.007 Sum_probs=12.0
Q ss_pred HHHHHHhCCCChHHHHHHHHHHH
Q 038114 120 AIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 120 ~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
.+.-|+.+.|++++|.+..+.+.
T Consensus 83 yLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 83 YLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Confidence 33445555555555555555444
No 296
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=59.68 E-value=13 Score=25.16 Aligned_cols=73 Identities=7% Similarity=-0.015 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHh
Q 038114 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGL 151 (170)
Q Consensus 75 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~ 151 (170)
.-|+.-....|..--.+ +.+.++|..|...|+- .--..-|......+...|++.+|..+|..-.+.+-+|-..
T Consensus 114 knD~RyLklWl~Ya~~~---~~p~~if~~L~~~~IG-~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 114 KDDVRYLRIWMQYVNYI---DEPVELFSFLAHHHIG-QESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLR 186 (223)
T ss_dssp TTCHHHHHHHHHHHTTC---SCHHHHHHHHHHTTCS-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHH
T ss_pred cCCHHHHHHHHHHHHcc---CCHHHHHHHHHHCCcc-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 44555444444433333 4677899999988873 3334568888888999999999999999998888887443
No 297
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=59.60 E-value=29 Score=21.60 Aligned_cols=64 Identities=6% Similarity=0.142 Sum_probs=44.4
Q ss_pred HHHHHhhCCCCcchhhHHHHHHHhhccc-chHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHH
Q 038114 30 FDFLQNNTNFRIRPSTYACLISTCSSLR-SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95 (170)
Q Consensus 30 ~~~m~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 95 (170)
.+.+ +..|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-|+.+...|-+.
T Consensus 5 ~~~l-~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 5 NQAL-KDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHH-HHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHH-HHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3457 788888887644 3445555555 67789999999998876667655555557887777543
No 298
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=59.55 E-value=30 Score=24.89 Aligned_cols=25 Identities=8% Similarity=0.129 Sum_probs=14.2
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHH
Q 038114 46 YACLISTCSSLRSLQLGRKVHDHIL 70 (170)
Q Consensus 46 ~~~li~~~~~~~~~~~a~~~~~~m~ 70 (170)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3455555556666666655555553
No 299
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=59.24 E-value=29 Score=21.47 Aligned_cols=62 Identities=11% Similarity=0.188 Sum_probs=39.4
Q ss_pred HHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCH
Q 038114 30 FDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSL 94 (170)
Q Consensus 30 ~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 94 (170)
-+.+ ++.|++++..-. .++......+ .-.|.++++.+.+.+...+..|-=.-|+.+...|-+
T Consensus 7 ~~~L-~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 7 KSDL-RQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHH-HTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHH-HHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 3456 778888877632 2333333444 567899999998887666655444444777666643
No 300
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=58.81 E-value=9.8 Score=19.87 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHh
Q 038114 131 ANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160 (170)
Q Consensus 131 ~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~ 160 (170)
.++|+..|.+|.+..-.++..||.-.++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 356777777777665556667777777766
No 301
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=57.93 E-value=22 Score=23.83 Aligned_cols=20 Identities=10% Similarity=0.049 Sum_probs=9.2
Q ss_pred CChHHHHHHHHHHHhCCCCC
Q 038114 129 SNANEAMSLFSEMRDRELIP 148 (170)
Q Consensus 129 g~~~~a~~l~~~m~~~~~~p 148 (170)
++.....++++.+.+.|..+
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCCS
T ss_pred cccchHHHHHHHHHHcCCCC
Confidence 34333344555555555443
No 302
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=57.11 E-value=3.8 Score=25.58 Aligned_cols=39 Identities=5% Similarity=0.006 Sum_probs=17.5
Q ss_pred HHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCC
Q 038114 69 ILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 69 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 109 (170)
+.+.|+.++.. --.++..+...+ .-.|.++++.+++.+.
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~ 48 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTAS 48 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCT
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCC
Confidence 34445554442 223334444444 4455555555554443
No 303
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=56.82 E-value=26 Score=25.11 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=29.7
Q ss_pred HHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcC
Q 038114 29 AFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK 73 (170)
Q Consensus 29 ~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 73 (170)
++..+ ...|+.|...++..++..+++.=.++.+..+|+.+...|
T Consensus 215 L~~hL-~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 215 LFAHF-KKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHH-HHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHH-HHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 34445 556777777777777777776666777777777776655
No 304
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=55.67 E-value=24 Score=25.79 Aligned_cols=76 Identities=9% Similarity=0.004 Sum_probs=48.0
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCC-CCcchhhHHHHHHHhhccc-chHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTN-FRIRPSTYACLISTCSSLR-SLQLGRKVHDHILSSKSQPDVVLQNYILNMYGK 90 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 90 (170)
++.-|...|+.++|.+.++++ ...+ +. ....+..+..+.-+.. .-+.+-.++..+...|+.+.......+...+..
T Consensus 18 ii~EY~~~~D~~Ea~~~l~eL-~~p~~~~-~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~lle~ 95 (364)
T 3l6a_A 18 VVTEYLNSGNANEAVNGVREM-RAPKHFL-PEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQ 95 (364)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH-TCCGGGH-HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHh-CCchhhH-HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence 799999999999999999999 4311 11 1234444555554432 346677788888887765544444444444433
No 305
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=55.27 E-value=29 Score=20.21 Aligned_cols=59 Identities=10% Similarity=0.008 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccc--hHHHHHHHHHH-HhcCCCCCHHHHHHH
Q 038114 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRS--LQLGRKVHDHI-LSSKSQPDVVLQNYI 84 (170)
Q Consensus 25 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m-~~~~~~~~~~~~~~l 84 (170)
.+.++-++. ..-|+.|+..+...++..|...+- .+.+.++..-. -..|..|+....+.+
T Consensus 27 sae~L~eEf-defGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEEL-QIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHH-HHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 345566666 666888887777777777765543 11222222221 234667776666554
No 306
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=54.54 E-value=40 Score=21.61 Aligned_cols=74 Identities=12% Similarity=0.047 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhh
Q 038114 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLT 152 (170)
Q Consensus 75 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t 152 (170)
.-|+.-....|..--.+++ +.++|..|...|+- .--..-|......+-..|++.+|.++|..-.+.+-+|-...
T Consensus 60 knD~RyLklWl~ya~~~~~---p~~if~~L~~~~IG-~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLCNE---PLDMYSYLHNQGIG-VSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp TTCHHHHHHHHHHHHHCSC---HHHHHHHHHHTTSS-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred ccCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcc-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 4466555555544444444 67789999988873 33345688888888899999999999999999988886543
No 307
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=54.51 E-value=37 Score=22.03 Aligned_cols=20 Identities=5% Similarity=-0.237 Sum_probs=12.2
Q ss_pred HhhhcccCCHHHHHHHHHHH
Q 038114 14 YNSQPIQNLYNEALVAFDFL 33 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m 33 (170)
+...++.|+.+....+++.-
T Consensus 10 l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHhc
Confidence 45555666666666666554
No 308
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=53.00 E-value=28 Score=23.21 Aligned_cols=89 Identities=9% Similarity=-0.061 Sum_probs=53.8
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchh-------hHHHHHHHhh--cccchHHHHHHHHHHHhcCC---------
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPS-------TYACLISTCS--SLRSLQLGRKVHDHILSSKS--------- 74 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-------~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~--------- 74 (170)
.+...++.|+.+....+++.+ ...|..++.. -.+.|..+.. +.|+.+-+..+++.-...+.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 86 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFL-LTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPF 86 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHH-HHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCB
T ss_pred HHHHHHHhCCHHHHHHHHHHH-HhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccc
Confidence 456667889999988898887 6666666643 3345555542 66888877777765433110
Q ss_pred C-CCHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 038114 75 Q-PDVVLQNYILNMYGKCGSLEDARVVSDE 103 (170)
Q Consensus 75 ~-~~~~~~~~li~~~~~~~~~~~a~~~~~~ 103 (170)
. .|..- .+.+...+..|+.+-+.-+++.
T Consensus 87 ~~~d~~g-~t~L~~A~~~g~~~~v~~Ll~~ 115 (260)
T 3jxi_A 87 RDVYYRG-QTALHIAIERRCKHYVELLVEK 115 (260)
T ss_dssp CCSSEES-BCHHHHHHHTTCHHHHHHHHHT
T ss_pred cccccCC-CCHHHHHHHcCCHHHHHHHHhC
Confidence 0 00011 1234555667888877666663
No 309
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=52.57 E-value=49 Score=22.05 Aligned_cols=118 Identities=10% Similarity=0.085 Sum_probs=57.7
Q ss_pred HHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHH
Q 038114 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV--LQNYILNMYG 89 (170)
Q Consensus 12 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~ 89 (170)
+.+...++.|+.+.+..+++.- .......+..-. +.+...+..|+.+ +++.+.+.|..++.. ...+.+...+
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~-t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGG-ANVNFQEEEGGW-TPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTTCC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCC-cHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 3566677788877665555443 222222122223 3444455566665 555566666655421 1123445555
Q ss_pred cCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHH
Q 038114 90 KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFS 139 (170)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~ 139 (170)
+.|+.+-+..+++.-...+ ..+...++.+..+ +..|+.+-+..+++
T Consensus 81 ~~~~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~A-~~~~~~~~~~~Ll~ 126 (285)
T 1wdy_A 81 IAGSVKLLKLFLSKGADVN---ECDFYGFTAFMEA-AVYGKVKALKFLYK 126 (285)
T ss_dssp HHTCHHHHHHHHHTTCCTT---CBCTTCCBHHHHH-HHTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCCC---ccCcccCCHHHHH-HHhCCHHHHHHHHH
Confidence 6777776666665321111 1222333444443 45577654444443
No 310
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=52.52 E-value=40 Score=21.10 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=33.5
Q ss_pred ccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccC
Q 038114 56 LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQR 107 (170)
Q Consensus 56 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 107 (170)
..+...+..+++++.+.+..-...-.=-|--++.|.|+++.|.+..+.+.+.
T Consensus 55 ~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 55 VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4456677778888776543222333334445778888888888888877654
No 311
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=52.48 E-value=1e+02 Score=25.63 Aligned_cols=140 Identities=10% Similarity=-0.002 Sum_probs=76.7
Q ss_pred HHhhhcccCCH---HHHHHHHHHHHhhC--C--CCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038114 13 FYNSQPIQNLY---NEALVAFDFLQNNT--N--FRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85 (170)
Q Consensus 13 li~~~~~~~~~---~~a~~~~~~m~~~~--~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 85 (170)
++...|..|.. +.|.+.|+.. ... + +.||.. ..+...-.+.|..++-..+++.+++.. +..--..++
T Consensus 692 ~l~~ac~~g~~~c~~~a~~~f~~~-~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll 765 (909)
T 4fke_A 692 AISTACSNGLPQCENLAKTLFDQW-MSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLR 765 (909)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-HTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHH-hhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHH
Confidence 35555565554 4677888776 432 2 445543 333333334566666667777777653 455667889
Q ss_pred HHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhC-CCChHHHHHHHHHHHh---CCCCCCHhhHHHHHHHhc
Q 038114 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVAS-PSNANEAMSLFSEMRD---RELIPDGLTVRSLLCACT 161 (170)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~l~~~m~~---~~~~p~~~t~~~ll~~~~ 161 (170)
.+++...+.+...++++.....+.+ ++. ..... +.+.+. ....+.|.+.+.+=-+ .........+..+|...+
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~~~i-r~q-d~~~~-~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~ 842 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNPDLI-RKQ-DATST-INSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVT 842 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCTTTS-CGG-GHHHH-HHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHhCCCCC-chh-hHHHH-HHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 9999999999999998877654431 333 22333 333332 2223444444432111 122334445666665543
No 312
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=52.10 E-value=32 Score=22.95 Aligned_cols=88 Identities=11% Similarity=0.073 Sum_probs=51.5
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHH-----------HHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHH-HHHH
Q 038114 73 KSQPDVVLQNYILNMYGKCGSLEDARV-----------VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMS-LFSE 140 (170)
Q Consensus 73 ~~~~~~~~~~~li~~~~~~~~~~~a~~-----------~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~-l~~~ 140 (170)
...|....|+..+...+..|++.++.. +-+.+...+. .++...|...|..|+.. ++..+.+ +.+.
T Consensus 108 ~~~p~~~aY~~~l~~~a~~~~~~~~~aAl~pc~~~Y~~ig~~l~~~~~--~~~~~~y~~WI~~y~~~-~f~~~v~~~~~~ 184 (221)
T 3ibx_A 108 CPTLANKSYTSYMLAEGFKGSIKEVAAAVLSCGWSYLVIAQNLSQIPN--ALEHAFYGHWIKGYSSK-EFQACVNWNINL 184 (221)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCHHHHHHHTHHHHHHHHHHHHHHTCSSS--TTTCTTTHHHHHHTTSH-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCChHHHHHHHhCCH-HHHHHHHHHHHH
Confidence 345667889999888888888766543 2233333322 12346789999999863 4444443 3333
Q ss_pred HHhCCCCCCHhhHHHHHHHhcCC
Q 038114 141 MRDRELIPDGLTVRSLLCACTSP 163 (170)
Q Consensus 141 m~~~~~~p~~~t~~~ll~~~~~~ 163 (170)
+-+.+...+......+.+.+.+.
T Consensus 185 ld~~~~~~~~~~~~~~~~~F~~a 207 (221)
T 3ibx_A 185 LDSLTLASSKQEIEKLKEIFITT 207 (221)
T ss_dssp HHHHCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCHHHHHHHHHHHHHH
Confidence 33334445555666666555443
No 313
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=51.82 E-value=30 Score=22.07 Aligned_cols=25 Identities=4% Similarity=-0.098 Sum_probs=15.1
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHH
Q 038114 46 YACLISTCSSLRSLQLGRKVHDHIL 70 (170)
Q Consensus 46 ~~~li~~~~~~~~~~~a~~~~~~m~ 70 (170)
...+|.-|...++.++|..-++++.
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3455556666666666666666654
No 314
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=51.34 E-value=44 Score=21.14 Aligned_cols=70 Identities=10% Similarity=0.115 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhc--CCCCCHH-HHHHHHHHHHcCCCH
Q 038114 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS--KSQPDVV-LQNYILNMYGKCGSL 94 (170)
Q Consensus 23 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~-~~~~li~~~~~~~~~ 94 (170)
.+.+++-+.+.-++.|.+++.. =..++......+..-.|.++++.+.+. +...+.. +|++| +.+...|-+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL-~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTL-NLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHH-HHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHH-HHHHHCCCE
Confidence 4555555544327889998775 345566677777788899999999887 6666644 55554 777777754
No 315
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=51.21 E-value=27 Score=21.03 Aligned_cols=42 Identities=7% Similarity=0.054 Sum_probs=23.1
Q ss_pred HHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHh
Q 038114 29 AFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILS 71 (170)
Q Consensus 29 ~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 71 (170)
+|+.+ ....+.|+...--.-|..+...++++.|.+++..+..
T Consensus 48 LfdkL-n~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQW-AGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHH-HHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHH-hcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555 5555544443333334444556677777777766654
No 316
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=51.14 E-value=20 Score=22.07 Aligned_cols=60 Identities=10% Similarity=0.147 Sum_probs=35.0
Q ss_pred hhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHH
Q 038114 35 NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95 (170)
Q Consensus 35 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 95 (170)
+..|.+++.. =..++......+..-.|.++++.+.+.+...+..|-=.-|+.+...|-+.
T Consensus 6 r~~g~r~T~q-R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 6 PPVKGRATRQ-RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp ----CHHHHH-HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred CCCCCccCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4455555543 23455555555566778888888877766666555444557777777543
No 317
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=50.74 E-value=57 Score=22.94 Aligned_cols=39 Identities=10% Similarity=0.097 Sum_probs=21.2
Q ss_pred hhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcC
Q 038114 35 NNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSK 73 (170)
Q Consensus 35 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 73 (170)
...|+.|...++..++..+++.=.++.+..+|+.+...|
T Consensus 181 ~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g 219 (310)
T 3hzj_A 181 SDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEG 219 (310)
T ss_dssp HHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Confidence 344555555555555555555545555555555555544
No 318
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=50.50 E-value=6.9 Score=24.83 Aligned_cols=34 Identities=6% Similarity=-0.096 Sum_probs=24.4
Q ss_pred ccchHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHH
Q 038114 56 LRSLQLGRKVHDHILSSKSQ-PDVVLQNYILNMYG 89 (170)
Q Consensus 56 ~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~ 89 (170)
...++.|.+.+..|++.-+. -.+..||.+|..+-
T Consensus 71 ~~~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK 105 (152)
T 1rw2_A 71 TPYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQ 105 (152)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 35688888888888875332 25678998888764
No 319
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=50.27 E-value=46 Score=22.53 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=10.8
Q ss_pred HHhhcccchHHHHHHHHHHHh
Q 038114 51 STCSSLRSLQLGRKVHDHILS 71 (170)
Q Consensus 51 ~~~~~~~~~~~a~~~~~~m~~ 71 (170)
-.|.+.|.+++|.++++....
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHhcchHHHHHHHHHHhc
Confidence 334555555555555555543
No 320
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=49.14 E-value=13 Score=19.38 Aligned_cols=18 Identities=17% Similarity=0.060 Sum_probs=10.3
Q ss_pred CCHHHHHHHHhhcccCCC
Q 038114 92 GSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~ 109 (170)
|+++.|...+-+|...+.
T Consensus 37 gdvd~aI~~LL~m~~~~~ 54 (59)
T 1wgl_A 37 GNKDAAINSLLQMGEEPS 54 (59)
T ss_dssp TCHHHHHHHHHHSSCCCC
T ss_pred CCHHHHHHHHHcCcCCCC
Confidence 456666666666555544
No 321
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=48.74 E-value=49 Score=21.09 Aligned_cols=73 Identities=7% Similarity=-0.030 Sum_probs=42.8
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcc-cchHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSL-RSLQLGRKVHDHILSSKSQPDVVLQNYILNMY 88 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 88 (170)
++.-|...|+.++|...++++ ....+.| ..+...+-.++-+. .+-+.+-.++..+.. ++.+.......+...+
T Consensus 16 ii~EYf~~~D~~Ea~~~l~eL-~~p~~~~-~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~~ls~~~i~~Gf~~ll 89 (165)
T 2rg8_A 16 IIQEYFEHGDTNEVAEMLRDL-NLGEMKS-GVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLL 89 (165)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH-TCSGGGG-HHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-TTBCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh-CCcccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 799999999999999999999 5433222 11222233333333 334566677777743 5544444444443333
No 322
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=47.33 E-value=45 Score=20.09 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=28.5
Q ss_pred HHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCH
Q 038114 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSL 94 (170)
Q Consensus 49 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 94 (170)
++..+...+..-.|.++++.+.+.+...+..|--.-|+.+...|-+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 4444444555667778888887776555655444445666666643
No 323
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=46.25 E-value=32 Score=21.71 Aligned_cols=18 Identities=6% Similarity=-0.149 Sum_probs=9.1
Q ss_pred HhhhcccCCHHHHHHHHH
Q 038114 14 YNSQPIQNLYNEALVAFD 31 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~ 31 (170)
+...+..|+.+.+..++.
T Consensus 9 L~~A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHhccHHHHHHHHH
Confidence 333445556555555544
No 324
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=46.12 E-value=44 Score=21.51 Aligned_cols=20 Identities=5% Similarity=-0.007 Sum_probs=10.9
Q ss_pred HhhhcccCCHHHHHHHHHHH
Q 038114 14 YNSQPIQNLYNEALVAFDFL 33 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m 33 (170)
+...++.|+.+.+..+++.-
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~ 25 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSK 25 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHhcC
Confidence 34445556666666555544
No 325
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=46.08 E-value=12 Score=22.33 Aligned_cols=90 Identities=10% Similarity=0.031 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 038114 22 LYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILS-SKSQPDVVLQNYILNMYGKCGSLEDARVV 100 (170)
Q Consensus 22 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 100 (170)
++..|+.-+++. ... .+|......++..+... ++.+.++.+...+ .|+ ++.++...++...+.|-++....+
T Consensus 3 ~~~~al~~L~e~-~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~~~w 75 (119)
T 1wty_A 3 SLARAVERLKAA-LER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPEDPFW 75 (119)
T ss_dssp CHHHHHHHHHHH-HSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCCHHH
T ss_pred HHHHHHHHHHHH-Hhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcHHHH
Confidence 456666666666 443 45666777777776644 6666677666654 465 466778888888888876555333
Q ss_pred HhhcccCCCCCCCChhhHHHHH
Q 038114 101 SDEMPQRNVIESPDLASWNAII 122 (170)
Q Consensus 101 ~~~m~~~~~~~~p~~~~~~~li 122 (170)
.+....++. .+++|+...
T Consensus 76 ~~m~~~RN~----~vH~Y~~~~ 93 (119)
T 1wty_A 76 LEMLELRNL----TNHTYDEAL 93 (119)
T ss_dssp HHHHHHHHH----GGGTTSHHH
T ss_pred HHHHHHhhH----hcccccHHH
Confidence 333333333 335665553
No 326
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=45.87 E-value=56 Score=20.82 Aligned_cols=27 Identities=4% Similarity=-0.045 Sum_probs=12.7
Q ss_pred HHhhcccchHHHHHHHHHHHhcCCCCC
Q 038114 51 STCSSLRSLQLGRKVHDHILSSKSQPD 77 (170)
Q Consensus 51 ~~~~~~~~~~~a~~~~~~m~~~~~~~~ 77 (170)
...+..|..+.-.++.+.+.+.|..++
T Consensus 43 h~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 43 YDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 333344444444445555555554443
No 327
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=45.51 E-value=45 Score=19.68 Aligned_cols=80 Identities=9% Similarity=-0.004 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 038114 21 NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100 (170)
Q Consensus 21 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 100 (170)
...++|..+-+.+ ...+. ...+--+-+....+.|++++|..+.+.+ ..||...|-+| +-.|.|..++++.-
T Consensus 21 H~HqEA~tIAdwL-~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~r 91 (116)
T 2p58_C 21 HYHEEANCIAEWL-HLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLAL--CEYRLGLGSALESR 91 (116)
T ss_dssp TCHHHHHHHHHHH-HHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHH--HHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHH-HhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHH
Confidence 4567888888888 65544 3323333344567889999888776655 48888888776 34567778888877
Q ss_pred HhhcccCCC
Q 038114 101 SDEMPQRNV 109 (170)
Q Consensus 101 ~~~m~~~~~ 109 (170)
+..+...|-
T Consensus 92 L~~la~sg~ 100 (116)
T 2p58_C 92 LNRLARSQD 100 (116)
T ss_dssp HHHHTTCCC
T ss_pred HHHHHhCCC
Confidence 777776665
No 328
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=45.11 E-value=41 Score=21.19 Aligned_cols=127 Identities=9% Similarity=0.008 Sum_probs=61.1
Q ss_pred HHHhhhcccCCHHHHHHHHHHHHhhCCCCcchh---hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHH--HHHHHHH
Q 038114 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPS---TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV--LQNYILN 86 (170)
Q Consensus 12 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~ 86 (170)
+.+...++.|+.+-+ +.+ .+.|..++.. ..+. +...+..|+.+-+..+++. .+..++.. .-.+.+.
T Consensus 41 t~L~~A~~~~~~~~v----~~L-l~~g~~~~~~~~~g~t~-l~~A~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t~L~ 111 (201)
T 3hra_A 41 TPLNIAVHNNDIEIA----KAL-IDRGADINLQNSISDSP-YLYAGAQGRTEILAYMLKH---ATPDLNKHNRYGGNALI 111 (201)
T ss_dssp CHHHHHHHHTCHHHH----HHH-HHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHH---SCCCTTCCCTTSCCSHH
T ss_pred CHHHHHHHcCCHHHH----HHH-HHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhc---cCcccccccCCCCcHHH
Confidence 334445556665443 444 4445444432 2333 3344455666654444432 22222111 1112344
Q ss_pred HHHcCCCHHHHHHHHhhc-ccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCH
Q 038114 87 MYGKCGSLEDARVVSDEM-PQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDG 150 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m-~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~ 150 (170)
..++.|+.+-+..+++.- ...+ ..|..-.+.+..++........-.++.+.+.+.|..|+.
T Consensus 112 ~A~~~~~~~~v~~Ll~~g~~~~~---~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 112 PAAEKGHIDNVKLLLEDGREDID---FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp HHHHTTCHHHHHHHHHHCCCCTT---CCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHcCCHHHHHHHHHcCCCCcC---CCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc
Confidence 556678887777777654 2221 234444555555554433333445666667777766553
No 329
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=44.97 E-value=60 Score=20.88 Aligned_cols=50 Identities=4% Similarity=-0.106 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCC
Q 038114 25 EALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQP 76 (170)
Q Consensus 25 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 76 (170)
.+..+++.+ ...|+--|..--.+.++...+.|.+ ....+-.++.+.|+..
T Consensus 51 ~ie~vl~~L-~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~~ 100 (177)
T 3e3v_A 51 YISEIINKL-IDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGIDD 100 (177)
T ss_dssp HHHHHHHHH-HHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCCH
Confidence 344466666 6666644443334444444433221 2334555666666543
No 330
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=44.22 E-value=1.4e+02 Score=25.08 Aligned_cols=119 Identities=8% Similarity=-0.022 Sum_probs=59.3
Q ss_pred cccCCHHHHHHHHHHHHhhCCCCcchhhHH--HHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHH
Q 038114 18 PIQNLYNEALVAFDFLQNNTNFRIRPSTYA--CLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLE 95 (170)
Q Consensus 18 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 95 (170)
.-.|+.+.+..+.+.+ ... ..|...--. ++--+|+..|+.....+++..+.... ..++.-...+--+....|+.+
T Consensus 535 l~~g~~e~~~~li~~L-~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 535 INYGRQELADDLITKM-LAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp HTTTCGGGGHHHHHHH-HHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCS
T ss_pred hhCCChHHHHHHHHHH-HhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHH
Confidence 3556666666666666 332 112222111 22334566667666666776666542 223333322222333456666
Q ss_pred HHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCCh-HHHHHHHHHHH
Q 038114 96 DARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNA-NEAMSLFSEMR 142 (170)
Q Consensus 96 ~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~l~~~m~ 142 (170)
.+.++++.+.+.+ .|.+.---++..|....|.. .++..++..+.
T Consensus 612 ~v~rlv~~L~~~~---d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 612 TVPRIVQLLSKSH---NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp SHHHHTTTGGGCS---CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 6666666554432 34544444444555555443 45666666665
No 331
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=43.94 E-value=50 Score=21.46 Aligned_cols=82 Identities=10% Similarity=0.060 Sum_probs=38.5
Q ss_pred HHHhhhcccCCHHHHHHHHHHHHhhCCCCcchh---hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHH--HHHHHHH
Q 038114 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPS---TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV--LQNYILN 86 (170)
Q Consensus 12 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~ 86 (170)
+.+...+..|+.+-+ +.+ .+.|..++.. -.+. +...+..|+.+ +.+.+.+.|..++.. .-.+.+.
T Consensus 13 t~L~~A~~~g~~~~v----~~L-l~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~ 82 (237)
T 3b7b_A 13 SPLHAAAEAGHVDIC----HML-VQAGANIDTCSEDQRTP-LMEAAENNHLE----AVKYLIKAGALVDPKDAEGSTCLH 82 (237)
T ss_dssp CHHHHHHHHTCHHHH----HHH-HHTTCCTTCCCTTCCCH-HHHHHHTTCHH----HHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred CHHHHHHHcCcHHHH----HHH-HHcCCCcCccCCCCCCH-HHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCcHHH
Confidence 345555666776543 333 3344444332 2233 33334455555 444455555443321 1122344
Q ss_pred HHHcCCCHHHHHHHHhh
Q 038114 87 MYGKCGSLEDARVVSDE 103 (170)
Q Consensus 87 ~~~~~~~~~~a~~~~~~ 103 (170)
..+..|+.+-+..+++.
T Consensus 83 ~A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHHHTTCHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHhC
Confidence 45566776666665554
No 332
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=43.01 E-value=68 Score=22.33 Aligned_cols=83 Identities=11% Similarity=-0.008 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCCCCCHH--HHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHH
Q 038114 63 RKVHDHILSSKSQPDVV--LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140 (170)
Q Consensus 63 ~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~ 140 (170)
..+.+.+.+.|..++.. ...+.+...++.|..+.+..+++.-.. .+. ..|..-.+.|..+ ++.|+.+-+. -
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~-~vn-~~d~~G~TpL~~A-~~~g~~~iv~----~ 291 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI-EIN-DTDSDGKTALLLA-VELKLKKIAE----L 291 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTC-CTT-CBCTTSCBHHHHH-HHTTCHHHHH----H
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCC-ccc-CcCCCCCCHHHHH-HHcCCHHHHH----H
Confidence 34555667777665432 122344556677888777766653211 111 2232333444444 4456655443 3
Q ss_pred HHhCCCCCCHhh
Q 038114 141 MRDRELIPDGLT 152 (170)
Q Consensus 141 m~~~~~~p~~~t 152 (170)
+.+.|..||..+
T Consensus 292 Ll~~GAd~n~~~ 303 (337)
T 4g8k_A 292 LCKRGASTDCGD 303 (337)
T ss_dssp HHTTSCSSTTCC
T ss_pred HHHCCCCCCCCC
Confidence 445676666554
No 333
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=42.86 E-value=74 Score=24.91 Aligned_cols=25 Identities=4% Similarity=0.007 Sum_probs=11.8
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 118 WNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 118 ~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
-.-++..|++.|-.+.|.++++.+-
T Consensus 519 ~e~vL~iCa~l~L~~~ar~I~k~~g 543 (570)
T 3f3f_C 519 IEWMLSICVEWRLPEIAKEIYTTLG 543 (570)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHH
Confidence 3444444444444444544444443
No 334
>4fn6_A Thiaminase-2, thiaminase II; alpha-helix, vitamin B1, BI-functional enzyme, C of thiamine INTO HMP and THZ; HET: CME; 2.69A {Staphylococcus aureus}
Probab=42.81 E-value=73 Score=21.29 Aligned_cols=86 Identities=2% Similarity=-0.104 Sum_probs=50.0
Q ss_pred CCCCCHHHHHHHHHHHHcC-CCHHHHHH-----------HHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHH
Q 038114 73 KSQPDVVLQNYILNMYGKC-GSLEDARV-----------VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSE 140 (170)
Q Consensus 73 ~~~~~~~~~~~li~~~~~~-~~~~~a~~-----------~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~ 140 (170)
...|....|+..+...+.. |++.++.. +...+...+. .++...|...|..|+ ..+..+.+-+.+
T Consensus 105 ~~~p~~~aY~~~l~~~a~~~~~~~~~~aAl~pC~~~Y~~ig~~l~~~~~--~~~~~~y~~WI~~y~--~~f~~~v~~~~~ 180 (229)
T 4fn6_A 105 VWPPSGDHYIKHMYFQAHSRENAIYTIAAMAPCPYIYAELAKRSQSDHK--LNREKDTAKWFDFYS--TEMDDIINVFES 180 (229)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCSHHHHHHHHTHHHHHHHHHHHHHHTCTT--CCTTSTHHHHHHHHT--TTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCCChHHHHHHHHh--HHHHHHHHHHHH
Confidence 4456677898988888888 88776543 2223333322 213468999999999 555555444444
Q ss_pred HH-hCCCCCCHhhHHHHHHHhcC
Q 038114 141 MR-DRELIPDGLTVRSLLCACTS 162 (170)
Q Consensus 141 m~-~~~~~p~~~t~~~ll~~~~~ 162 (170)
+. +.+...+......+.+.+.+
T Consensus 181 ~ld~~~~~~~~~~~~~~~~~F~~ 203 (229)
T 4fn6_A 181 LMNKLAESMSDKELEQVKQVFLE 203 (229)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCHHHHHHHHHHHHH
Confidence 33 33333444455555555543
No 335
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=42.11 E-value=99 Score=22.58 Aligned_cols=63 Identities=11% Similarity=0.117 Sum_probs=28.9
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhccc--chHHHHHHHHHHHhcCCCCC
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLR--SLQLGRKVHDHILSSKSQPD 77 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~ 77 (170)
++.-|...|+.++|.+.++++ ....+. ...+..++..+.-+.+ ..+.+.+++..+...|+...
T Consensus 223 lL~EY~~s~D~~EA~~ci~EL-~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 223 LLKEYLLSGDISEAEHCLKEL-EVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH-CCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHhccCCCHHHHHHHHHHc-cCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 455555556666666666555 322221 1223334444444322 23445555555555554433
No 336
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=41.81 E-value=75 Score=21.12 Aligned_cols=64 Identities=8% Similarity=-0.012 Sum_probs=41.4
Q ss_pred HhHHHhhhccc---CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccc-----hHHHHHHHHHHHhcCC
Q 038114 10 RFTFYNSQPIQ---NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRS-----LQLGRKVHDHILSSKS 74 (170)
Q Consensus 10 ~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~-----~~~a~~~~~~m~~~~~ 74 (170)
.|++|++|.++ .+++.|+-.+-+| .+.|.-|.-..=..++-+.-..|. ...|...++....-|.
T Consensus 7 HYd~ISAf~KSiRGSDpDAAly~LaRM-l~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 7 FYDLISALHKSVRGSAPDAALYWYARI-LTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 46677777554 7788888888888 888876766666666666655543 3445555555555553
No 337
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=41.10 E-value=44 Score=20.47 Aligned_cols=83 Identities=11% Similarity=0.109 Sum_probs=36.1
Q ss_pred hhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHcCC
Q 038114 15 NSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV--LQNYILNMYGKCG 92 (170)
Q Consensus 15 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~ 92 (170)
...++.|+.+.+..+++.- ...--..+..-.+.|..+ +..|+.+- .+.+.+.|..++.. ...+.+...+..|
T Consensus 7 ~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A-~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 7 HQLAAQGELDQLKEHLRKG-DNLVNKPDERGFTPLIWA-SAFGEIET----VRFLLEWGADPHILAKERESALSLASTGG 80 (172)
T ss_dssp HHHHHTTCHHHHHHHHTTC-SGGGGCCCTTSCCHHHHH-HHTTCHHH----HHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcC-cccccCCCCCCCCHHHHH-HHcCCHHH----HHHHHHcCCCchhhcccCCCHHHHHHHCC
Confidence 3445566766666555443 110011222233333333 34455543 33344444433321 1122344455666
Q ss_pred CHHHHHHHHhh
Q 038114 93 SLEDARVVSDE 103 (170)
Q Consensus 93 ~~~~a~~~~~~ 103 (170)
+.+-+..+++.
T Consensus 81 ~~~~v~~Ll~~ 91 (172)
T 3v30_A 81 YTDIVGLLLER 91 (172)
T ss_dssp CHHHHHHHHTT
T ss_pred CHHHHHHHHHc
Confidence 66665555543
No 338
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=40.78 E-value=55 Score=21.25 Aligned_cols=89 Identities=9% Similarity=-0.012 Sum_probs=49.3
Q ss_pred HHHHhhcccchHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHh
Q 038114 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVV--LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVA 126 (170)
Q Consensus 49 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~ 126 (170)
.|...+..|+.+.+..+++.+.+.|..++.. ...+.+...+..|+.+-+..+++.-.... .++..-.+.+ ...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~~g~t~l-~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM---ALDRHGQTAA-HLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---CCCTTSCCHH-HHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc---ccCCCCCCHH-HHHH
Confidence 3455566788988888888777776655432 12234556667788876666665321111 1222223333 3334
Q ss_pred CCCChHHHHHHHHHH
Q 038114 127 SPSNANEAMSLFSEM 141 (170)
Q Consensus 127 ~~g~~~~a~~l~~~m 141 (170)
..|+.+-+..+++..
T Consensus 88 ~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 88 EHRSPTCLRALLDSA 102 (241)
T ss_dssp HTTCHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHcC
Confidence 567776666555543
No 339
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.48 E-value=1.1e+02 Score=22.80 Aligned_cols=128 Identities=11% Similarity=0.048 Sum_probs=72.7
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhh----cccchHH--HHHHHHHHHh--cC-CCC---CHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCS----SLRSLQL--GRKVHDHILS--SK-SQP---DVVL 80 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~~~~~~--a~~~~~~m~~--~~-~~~---~~~~ 80 (170)
++..|...|+|+...+.+..+.+.+|..+... ..+++.+. .....+. -..+...... .| +-. ....
T Consensus 62 iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai--~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl 139 (445)
T 4b4t_P 62 IVDLLASRNKWDDLNEQLTLLSKKHGQLKLSI--QYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARV 139 (445)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHH--HHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 56777777777777777766645555433332 23333332 1121111 1111111110 11 111 2344
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCC---hhhHHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 81 QNYILNMYGKCGSLEDARVVSDEMPQRNVIESPD---LASWNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 81 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
...|.+.|...|++.+|.+++.++...-.-..+. +..|-..+..|...+++.+|..++....
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5667788889999999999998875321100111 3467777888899999999999988875
No 340
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=40.41 E-value=47 Score=20.18 Aligned_cols=48 Identities=10% Similarity=0.061 Sum_probs=33.1
Q ss_pred hHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccc
Q 038114 117 SWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 117 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e 167 (170)
.|--.|...+..++.+.|+++++-+.+.| +...|.+.+-.|...=++|
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpD 81 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPD 81 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTT
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChH
Confidence 34555666777788888888888887776 6667777777776554443
No 341
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=39.90 E-value=82 Score=21.05 Aligned_cols=50 Identities=4% Similarity=0.055 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCC
Q 038114 59 LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 59 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 109 (170)
.+.+..+.+.+.+.|+.-|..--..++....+.+.+ ...++-.++.+.|+
T Consensus 92 ~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI 141 (221)
T 3d5l_A 92 EEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGI 141 (221)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCC
Confidence 345556666666777666665555666655542221 34455666666776
No 342
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=39.85 E-value=26 Score=24.08 Aligned_cols=15 Identities=7% Similarity=0.087 Sum_probs=7.1
Q ss_pred hCCCChHHHHHHHHH
Q 038114 126 ASPSNANEAMSLFSE 140 (170)
Q Consensus 126 ~~~g~~~~a~~l~~~ 140 (170)
+..|+.+-+..+++.
T Consensus 169 ~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 169 IKNGHVDMMILLLDY 183 (285)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcChHHHHHHHHHc
Confidence 344555544444443
No 343
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=39.57 E-value=1e+02 Score=21.94 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=40.2
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhccc--chHHHHHHHHHHHhcCCCCCHHHHH
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLR--SLQLGRKVHDHILSSKSQPDVVLQN 82 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~ 82 (170)
++.-|...|+.++|.+.++++ ....+. ...+..++..+.-+.+ ..+.+..++..+.+.|+.+......
T Consensus 172 lL~EY~~~~D~~EA~~ci~EL-~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~ 241 (307)
T 2zu6_B 172 LLKEYLLSGDISEAEHCLKEL-EVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKR 241 (307)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH-CCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHc-CCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 677777778888888888887 432221 2234445555555532 2456667777777666554443333
No 344
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=39.30 E-value=1.4e+02 Score=23.57 Aligned_cols=117 Identities=8% Similarity=-0.051 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHhhCCCCcchh--hHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 038114 22 LYNEALVAFDFLQNNTNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV 99 (170)
Q Consensus 22 ~~~~a~~~~~~m~~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 99 (170)
+.+.|...|..........+... ....+.......+...++...+..........+. ..-.+....+.|+++.|.+
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL--IERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH--HHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH--HHHHHHHHHHCCCHHHHHH
Confidence 77899999988833433433222 2233333444455355566666665444323233 3334455567899999999
Q ss_pred HHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHh
Q 038114 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 100 ~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 143 (170)
.|..|..... . .....=-+-.+....|+.++|..+|..+..
T Consensus 307 ~~~~l~~~~~--~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 307 WLARLPMEAK--E-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHSCTTGG--G-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcccccc--c-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999987533 1 222223334566778999999999999874
No 345
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=38.96 E-value=68 Score=19.81 Aligned_cols=115 Identities=10% Similarity=-0.051 Sum_probs=55.6
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHcC
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVL--QNYILNMYGKC 91 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~ 91 (170)
+...++.|+.+.+..+++.- ...--..+..-.+.|. ..+..|+.+ +.+.+.+.|..++... -.+.+...+..
T Consensus 9 l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 9 IFTQCREGNAVAVRLWLDNT-ENDLNQGDDHGFSPLH-WACREGRSA----VVEMLIMRGARINVMNRGDDTPLHLAASH 82 (179)
T ss_dssp HHHHHHHTCHHHHHHHHHCT-TSCTTCCCTTSCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcC-cccccccCCCCCCHHH-HHHHcCcHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 44456678887777776653 2211123333334444 344556654 4555556666554321 12344555667
Q ss_pred CCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHH
Q 038114 92 GSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138 (170)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~ 138 (170)
|+.+-+..+++.-...+ ..|..-.+.+..+ +..|+.+-+..++
T Consensus 83 ~~~~~v~~Ll~~g~~~~---~~d~~g~t~L~~A-~~~~~~~~v~~Ll 125 (179)
T 3f6q_A 83 GHRDIVQKLLQYKADIN---AVNEHGNVPLHYA-CFWGQDQVAEDLV 125 (179)
T ss_dssp TCHHHHHHHHHTTCCTT---CCCTTSCCHHHHH-HHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCC---ccCCCCCCHHHHH-HHcCCHHHHHHHH
Confidence 77776666655421111 1222223333333 4456665444443
No 346
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.82 E-value=94 Score=21.08 Aligned_cols=89 Identities=9% Similarity=0.030 Sum_probs=58.5
Q ss_pred HHHHhhcccchHHHHHHHHHHHhc--CCCC----CHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHH
Q 038114 49 LISTCSSLRSLQLGRKVHDHILSS--KSQP----DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAII 122 (170)
Q Consensus 49 li~~~~~~~~~~~a~~~~~~m~~~--~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li 122 (170)
-|..+....++++|..+.++..+. +..+ +...-...|+.-...+.-..+..+.+++.. . ++...-...+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-~----~~~~~~r~~v 98 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-S----NEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-C----SSHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-c----CCHHHHHHHH
Confidence 367788889999999999887652 3332 112233344555555555566666666633 2 3445666777
Q ss_pred HHHhCCCChHHHHHHHHHHH
Q 038114 123 AGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 123 ~~~~~~g~~~~a~~l~~~m~ 142 (170)
..+.+-|+-++|.++|-+..
T Consensus 99 ~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHHH
Confidence 88899999999999987765
No 347
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=37.72 E-value=80 Score=20.29 Aligned_cols=105 Identities=10% Similarity=0.097 Sum_probs=62.0
Q ss_pred CCCCcchh--hHHHHHHHhhcccchHHHHHHHHHHHhc-CCCCC-------HHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 038114 37 TNFRIRPS--TYACLISTCSSLRSLQLGRKVHDHILSS-KSQPD-------VVLQNYILNMYGKCGSLEDARVVSDEMPQ 106 (170)
Q Consensus 37 ~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 106 (170)
.|..|.-. .+-.-+......+.++.|.-+.+.+... +..|+ ..++..+-+++...|++..|...|+...+
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34444333 4445567777888888888877775532 12233 23667777889999999999999987311
Q ss_pred -CCCC--------------CCC-------ChhhHHHHHHHHhCCCChHHHHHHHHHH
Q 038114 107 -RNVI--------------ESP-------DLASWNAIIAGVASPSNANEAMSLFSEM 141 (170)
Q Consensus 107 -~~~~--------------~~p-------~~~~~~~li~~~~~~g~~~~a~~l~~~m 141 (170)
.... +.| +...-=-+-.+|...+++++|+.+++.+
T Consensus 92 ~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 0000 011 1111122567788899999999998744
No 348
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=36.60 E-value=1.3e+02 Score=22.28 Aligned_cols=91 Identities=16% Similarity=0.056 Sum_probs=61.0
Q ss_pred HHHHHhhcccchHHHHHHHHHHHhc--CCCC---CHHHHHHHHHHHHcCCCHHHHHHHHhhcccC--CCCCCCChhhHHH
Q 038114 48 CLISTCSSLRSLQLGRKVHDHILSS--KSQP---DVVLQNYILNMYGKCGSLEDARVVSDEMPQR--NVIESPDLASWNA 120 (170)
Q Consensus 48 ~li~~~~~~~~~~~a~~~~~~m~~~--~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~p~~~~~~~ 120 (170)
-+...|...|++.+|.+++..+.+. .... -..+|-.-++.|...+++..+...+...... .+ .+++..- .
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai--~~~p~i~-a 180 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI--YCPPKVQ-G 180 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHH-H
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC--CCCHHHH-H
Confidence 6778888899999999888888763 2111 1446777788888999999999888765422 22 2333322 2
Q ss_pred HHH-----HHh-CCCChHHHHHHHHHH
Q 038114 121 IIA-----GVA-SPSNANEAMSLFSEM 141 (170)
Q Consensus 121 li~-----~~~-~~g~~~~a~~l~~~m 141 (170)
.|. .+. ..++|..|...|-+-
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 222 234 778899988877665
No 349
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=36.34 E-value=52 Score=24.26 Aligned_cols=37 Identities=11% Similarity=0.033 Sum_probs=18.5
Q ss_pred hCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhc
Q 038114 36 NTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSS 72 (170)
Q Consensus 36 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 72 (170)
..|+.|....+..++..+++.=.++.+..+|+.+...
T Consensus 224 ~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~e 260 (396)
T 1fkm_A 224 NEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSE 260 (396)
T ss_dssp HTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHC
Confidence 3445555555555555555444455555555555443
No 350
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=36.10 E-value=22 Score=17.84 Aligned_cols=22 Identities=5% Similarity=0.249 Sum_probs=16.6
Q ss_pred CChHHHHHHHHHHHhCCCCCCH
Q 038114 129 SNANEAMSLFSEMRDRELIPDG 150 (170)
Q Consensus 129 g~~~~a~~l~~~m~~~~~~p~~ 150 (170)
.+...|.++++.+++.|-.|+.
T Consensus 7 RDv~RaiELle~lq~sgevp~~ 28 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNNA 28 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcH
Confidence 3567888999999888866544
No 351
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=36.02 E-value=96 Score=20.67 Aligned_cols=84 Identities=7% Similarity=0.025 Sum_probs=45.2
Q ss_pred cccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC-----HHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCC
Q 038114 55 SLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS-----LEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPS 129 (170)
Q Consensus 55 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g 129 (170)
|..+.+.|+-++..|.+.| .|....-..++.+.--.|. +..|...++....-|.. +-....-.+++..++..+
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P-E~~i~LaqaviyLA~aPK 103 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP-EARIPLADVVVDLCLSPK 103 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT-TTHHHHHHHHHHHHHSCC
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCCc
Confidence 4567888888888888888 6655555555555555453 34444555555555552 233334444444443333
Q ss_pred --ChHHHHHHHHH
Q 038114 130 --NANEAMSLFSE 140 (170)
Q Consensus 130 --~~~~a~~l~~~ 140 (170)
..-.|+.-..+
T Consensus 104 SNs~y~A~~~A~~ 116 (204)
T 2r9g_A 104 SNSAYMALDAALA 116 (204)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 33444444333
No 352
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=35.97 E-value=75 Score=21.96 Aligned_cols=123 Identities=11% Similarity=0.019 Sum_probs=63.4
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHc
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV--LQNYILNMYGK 90 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~ 90 (170)
.+...++.|+.+....++... ...--..|..-. +.|...+..|+.+ +.+.+.+.|..++.. .-.+.+...+.
T Consensus 27 ~L~~A~~~g~~~~v~~ll~~~-~~~~~~~d~~g~-t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 100 (351)
T 3utm_A 27 ELLEAARSGNEEKLMALLTPL-NVNCHASDGRKS-TPLHLAAGYNRVR----IVQLLLQHGADVHAKDKGGLVPLHNACS 100 (351)
T ss_dssp HHHHHHHHTCHHHHHHHCCTT-TTTCCCSSTTCC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCC-CHHHHHHHcCCHH----HHHHHHHcCCCCCccCCCCCcHHHHHHH
Confidence 466667888888877776543 211111222222 3444455567766 455555666655322 11234455667
Q ss_pred CCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCC
Q 038114 91 CGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD 149 (170)
Q Consensus 91 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~ 149 (170)
.|+.+-+..+++.-...+ .++..-++.+..+ +..|+.+-+..++ +.|..|+
T Consensus 101 ~g~~~iv~~Ll~~g~~~~---~~~~~g~t~L~~A-~~~~~~~~v~~Ll----~~g~~~~ 151 (351)
T 3utm_A 101 YGHYEVTELLLKHGACVN---AMDLWQFTPLHEA-ASKNRVEVCSLLL----SHGADPT 151 (351)
T ss_dssp TTCHHHHHHHHHTTCCTT---CCCTTCCCHHHHH-HHTTCHHHHHHHH----HTTCCTT
T ss_pred CCCHHHHHHHHHCCCCCC---CCCCCCCCHHHHH-HHcCCHHHHHHHH----HcCCCCc
Confidence 788777666665421111 1233334444444 4567766555444 4455544
No 353
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=35.03 E-value=81 Score=23.86 Aligned_cols=62 Identities=15% Similarity=0.135 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCC--------hhhHHHHH-HHHhCCCChHHHHHHHHHHH
Q 038114 79 VLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPD--------LASWNAII-AGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 79 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~--------~~~~~~li-~~~~~~g~~~~a~~l~~~m~ 142 (170)
...|.|++.|.+.+++..+..+++.+...+. -|+ .++|.-.+ ..+...+++.+|.+.+.+--
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~~~--~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~ 247 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPKSM--LAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAF 247 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCC--CSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCC--CcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4678899999999999999999999876655 232 33444333 33456677888777655443
No 354
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=33.51 E-value=42 Score=23.40 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhcccC
Q 038114 80 LQNYILNMYGKCGSLEDARVVSDEMPQR 107 (170)
Q Consensus 80 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 107 (170)
.-|.+++.+..+|+++.|.++|+.+...
T Consensus 36 ~~n~l~R~FL~~gkl~AAr~l~~rlp~~ 63 (270)
T 3cqc_A 36 QGNAIMRKFLASKKHEAAKEVFVKIPQD 63 (270)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHCChH
Confidence 4577888888888888888888876543
No 355
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=33.00 E-value=81 Score=18.91 Aligned_cols=63 Identities=8% Similarity=-0.017 Sum_probs=36.6
Q ss_pred hHHHHHHHhhcc---cchHHHHH----HHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccC
Q 038114 45 TYACLISTCSSL---RSLQLGRK----VHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQR 107 (170)
Q Consensus 45 ~~~~li~~~~~~---~~~~~a~~----~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 107 (170)
++..++..|... ...+++.+ +|+.+.+..+.|++..--.-|......++++.|.++...+...
T Consensus 21 ~l~~~l~~~~~~~~k~~~~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 21 PLEQALEDCHGHTKKQVCDDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 455556655332 11344443 5555555566555544444445566778999999988776543
No 356
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.41 E-value=98 Score=19.72 Aligned_cols=56 Identities=9% Similarity=-0.048 Sum_probs=42.5
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCc--chhhHHHHHH-Hh-----hcccchHHHHHHHHHHHh
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRI--RPSTYACLIS-TC-----SSLRSLQLGRKVHDHILS 71 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~-~~-----~~~~~~~~a~~~~~~m~~ 71 (170)
+..|- .|++-+|.++|+.. -...-.+ ....|-.||. .. .+.|+...|..++..-..
T Consensus 40 i~lFn-~g~yfeaHEvLEe~-W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 40 VRLYN-SGEFHESHDCFEDE-WYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHH-TTCHHHHHHHHHHH-TTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHh-CCCchHHHHHHHHH-HHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444 49999999999998 7665556 5667888888 33 356889999999988765
No 357
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=32.39 E-value=62 Score=17.41 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=17.1
Q ss_pred HHHHHHHHhhcc-cCCCCCCCChhhHHHHHHHHhCCCC
Q 038114 94 LEDARVVSDEMP-QRNVIESPDLASWNAIIAGVASPSN 130 (170)
Q Consensus 94 ~~~a~~~~~~m~-~~~~~~~p~~~~~~~li~~~~~~g~ 130 (170)
.++|.+.|.+|. +.++ .|+ .+|.-.+..++..-+
T Consensus 14 ~eea~~~F~~LL~e~~V--~~~-~tWe~~~~~i~~DpR 48 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRV--PSN-ASWEQAMKMIINDPR 48 (71)
T ss_dssp HHHHHHHHHHHHHHTTC--CTT-CCHHHHHHHHHTSGG
T ss_pred HHHHHHHHHHHHHHcCc--CCC-CCHHHHHHHHccCcc
Confidence 455666666554 3444 333 455555555444333
No 358
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=32.13 E-value=1.6e+02 Score=22.05 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=31.1
Q ss_pred hCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCcc
Q 038114 126 ASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNV 166 (170)
Q Consensus 126 ~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 166 (170)
.+.++.+.|+.++.+|.+.|..|....=..++.+.-.-|..
T Consensus 266 irgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a 306 (447)
T 3pvs_A 266 VRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNA 306 (447)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCC
Confidence 45579999999999999999888776666666666555543
No 359
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=32.05 E-value=65 Score=21.59 Aligned_cols=91 Identities=11% Similarity=0.007 Sum_probs=54.8
Q ss_pred hHHHhhhcccCCHHHHHHHHHHHHhhCCCCc-------chhhHHHHHHHhh--cccchHHHHHHHHHHHh---------c
Q 038114 11 FTFYNSQPIQNLYNEALVAFDFLQNNTNFRI-------RPSTYACLISTCS--SLRSLQLGRKVHDHILS---------S 72 (170)
Q Consensus 11 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-------~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~---------~ 72 (170)
.+.+...++.|+.+.+..+++.. ...+... +..-.+.|..++. +.|+.+-+..+++.-.. .
T Consensus 14 ~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~ 92 (273)
T 2pnn_A 14 RRSIFDAVAQSNCQELESLLPFL-QRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNA 92 (273)
T ss_dssp HHHHHHHHHTTCSSTTTTHHHHH-HHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTC
T ss_pred chHHHHHHHcCCHHHHHHHHHHH-hhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhc
Confidence 44566667889999998899887 6555433 3445566666664 35778777777765432 1
Q ss_pred CCC-CCHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 038114 73 KSQ-PDVVLQNYILNMYGKCGSLEDARVVSDE 103 (170)
Q Consensus 73 ~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~ 103 (170)
+.. .|..-++ .+...++.|+.+-+..+++.
T Consensus 93 ~~~~~d~~g~t-pL~~A~~~g~~~~v~~Ll~~ 123 (273)
T 2pnn_A 93 SYTDSYYKGQT-ALHIAIERRNMTLVTLLVEN 123 (273)
T ss_dssp CCCSTTTTTCC-HHHHHHHTTCHHHHHHHHHT
T ss_pred ccccccCCCCC-HHHHHHHcCCHHHHHHHHHC
Confidence 111 1222223 34445567888877777765
No 360
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=32.03 E-value=64 Score=22.02 Aligned_cols=84 Identities=4% Similarity=-0.099 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHcC-CCHHHHHH-----------HHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 75 QPDVVLQNYILNMYGKC-GSLEDARV-----------VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 75 ~~~~~~~~~li~~~~~~-~~~~~a~~-----------~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
.|....|+..+...+.. |++.++.. +.+.+...+. .+....|...|..|+ .++..+.+-+.++.
T Consensus 126 ~p~~~aYt~~ll~~a~~~g~~~~~laAl~PC~w~Y~eig~~l~~~~~--~~~~~~Y~~WI~~Y~--~ef~~~v~~~~~~l 201 (248)
T 3no6_A 126 PPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPK--LNKESVTSKWFQFYS--TEMDELVDVFDQLM 201 (248)
T ss_dssp CHHHHHHHHHHHHHHHHCSSTHHHHHHHTHHHHHHHHHHHHHHHCTT--CCTTSTTHHHHHHHH--HHTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCchHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 44567888888888887 88766543 2223333322 223467899999998 55555544444333
Q ss_pred -hCCCCCCHhhHHHHHHHhcC
Q 038114 143 -DRELIPDGLTVRSLLCACTS 162 (170)
Q Consensus 143 -~~~~~p~~~t~~~ll~~~~~ 162 (170)
+.+...+......+.+.+.+
T Consensus 202 d~~~~~~s~~~~~~l~~~F~~ 222 (248)
T 3no6_A 202 DRLTKHCSETEKKEIKENFLQ 222 (248)
T ss_dssp HHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHhhhCCHHHHHHHHHHHHH
Confidence 33444455555555555544
No 361
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=31.79 E-value=1.1e+02 Score=20.30 Aligned_cols=72 Identities=4% Similarity=-0.103 Sum_probs=49.9
Q ss_pred hHhHHHhhhccc---CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccc-----hHHHHHHHHHHHhcCCCCCHHH
Q 038114 9 LRFTFYNSQPIQ---NLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRS-----LQLGRKVHDHILSSKSQPDVVL 80 (170)
Q Consensus 9 ~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~-----~~~a~~~~~~m~~~~~~~~~~~ 80 (170)
..|++|++|.++ .+++.|+-.+-+| .+.| -|.-..=..++-+.-..|. ...|...++....-|.+=....
T Consensus 13 ~HYd~iSAf~KSiRGSDpDAAly~LaRm-l~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~ 90 (204)
T 2r9g_A 13 AHYDVISAFQKSIRGSDVDAALHYLARL-VEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIP 90 (204)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHH
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 357888888665 8999999999999 9999 6665555666666666554 4456666666666675444333
Q ss_pred HH
Q 038114 81 QN 82 (170)
Q Consensus 81 ~~ 82 (170)
..
T Consensus 91 La 92 (204)
T 2r9g_A 91 LA 92 (204)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 362
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=31.76 E-value=39 Score=22.43 Aligned_cols=89 Identities=10% Similarity=-0.034 Sum_probs=52.4
Q ss_pred HHhhhcccCCHHHHHHHHHHHHhhCCCCcch-------hhHHHHHHHhhc--ccchHHHHHHHHHHHhcCCC--------
Q 038114 13 FYNSQPIQNLYNEALVAFDFLQNNTNFRIRP-------STYACLISTCSS--LRSLQLGRKVHDHILSSKSQ-------- 75 (170)
Q Consensus 13 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~-------- 75 (170)
.+...++.|+.+.+..+++.+ ...|..++. .-.+.|..++.. .|+.+-+..+++.-...+..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l-~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYL-RWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHH-HHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence 355567788998888888877 666665543 334455544432 27777777776654432211
Q ss_pred --CCHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 038114 76 --PDVVLQNYILNMYGKCGSLEDARVVSDE 103 (170)
Q Consensus 76 --~~~~~~~~li~~~~~~~~~~~a~~~~~~ 103 (170)
.|..-+ +.+...+..|+.+-+..+++.
T Consensus 84 ~~~d~~g~-t~L~~A~~~g~~~~v~~Ll~~ 112 (256)
T 2etb_A 84 TDEFYQGH-SALHIAIEKRSLQCVKLLVEN 112 (256)
T ss_dssp CSTTTTTC-CHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccccCC-CHHHHHHHcCCHHHHHHHHHc
Confidence 011122 334555677888777777665
No 363
>4gt9_A TS, tsase, thymidylate synthase THYX; flavin-dependent thymidylate synthase, TM0449, FAD, DUMP, 5, methylenetetrahydrofolate, transferase; HET: FAD UMP MEF; 1.39A {Thermotoga maritima} PDB: 1kq4_A 1o25_A* 1o24_A* 1o27_A* 1o28_A* 1o29_A* 1o2a_A* 1o2b_A* 1o26_A* 4gta_A* 4gtb_A* 4gtl_A* 3g4a_A* 3g4c_A* 4gtd_A* 4gtc_A* 4gte_A* 4gtf_A* 3n0b_A* 3n0c_A*
Probab=31.75 E-value=58 Score=22.07 Aligned_cols=56 Identities=9% Similarity=-0.135 Sum_probs=31.2
Q ss_pred CCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhcCCCccc
Q 038114 112 SPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCACTSPSNVL 167 (170)
Q Consensus 112 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~~~g~~e 167 (170)
.-|...|-.++..=+..+--.+..++...|.+.=.+.-..+|.++...+.+.-.+.
T Consensus 173 T~NlRsl~hfi~LR~~~~AQ~EIR~lA~~m~~~l~~~~P~~~~a~~~~~~~g~~ls 228 (232)
T 4gt9_A 173 TVNARSLMNFLNLRADSHAQWEIQQYALAIARIFKEKCPWTFEAFLKYAYKGDILK 228 (232)
T ss_dssp EEEHHHHHHHHHHHSSTTSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCCSSCC
T ss_pred EEeHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHChHHHHHHHhhCcCccccc
Confidence 34566777777764444433345555555544322224467888887776554443
No 364
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=31.65 E-value=89 Score=18.99 Aligned_cols=52 Identities=10% Similarity=-0.023 Sum_probs=33.2
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 038114 46 YACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVV 100 (170)
Q Consensus 46 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 100 (170)
|.-.|...+.+++.+-|.++++.+++.| +...|.+++-.|-..=+++-++++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 4445666666777777777777776665 555666666666666666666655
No 365
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=31.10 E-value=1.2e+02 Score=20.20 Aligned_cols=56 Identities=13% Similarity=0.045 Sum_probs=39.1
Q ss_pred hcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC-----HHHHHHHHhhcccCCC
Q 038114 54 SSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS-----LEDARVVSDEMPQRNV 109 (170)
Q Consensus 54 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~m~~~~~ 109 (170)
.+..+.+.|+-++..|.+.|-.|....-..++.+.--.|. +..|...++....-|.
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 3457899999999999999988866555566666555543 4555556665555555
No 366
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=30.26 E-value=46 Score=16.91 Aligned_cols=37 Identities=14% Similarity=0.219 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHcCCC--HHHHHHHHhhcc
Q 038114 64 KVHDHILSSKSQPDVVLQNYILNMYGKCGS--LEDARVVSDEMP 105 (170)
Q Consensus 64 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~ 105 (170)
+.++.+.+.|+.+.. ...+..+.|+ ++.|.+.+.+|.
T Consensus 11 qmlq~L~eMGFd~er-----ae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 11 QMLQELVNAGCDQEM-----AGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp HHHHHHHHHHCCHHH-----HHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHHH-----HHHHHHHhCcccHHHHHHHHHHhc
Confidence 445666667766642 3344455554 778887777775
No 367
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=29.97 E-value=1.6e+02 Score=21.28 Aligned_cols=69 Identities=10% Similarity=-0.032 Sum_probs=42.1
Q ss_pred CHHHHHHHHhhcccCCCCCCCC--hhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHhcCC
Q 038114 93 SLEDARVVSDEMPQRNVIESPD--LASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD-GLTVRSLLCACTSP 163 (170)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~t~~~ll~~~~~~ 163 (170)
+.....++-..+-.-++ .|. ..+....+..+.+.+++..|-.+-+++.+.+-.|+ ...-..++..|-+.
T Consensus 185 ~~kR~lELAAYFT~c~L--Qp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKL--SPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSM 256 (325)
T ss_dssp CHHHHHHHHHHGGGSCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHhccCCC--cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Confidence 44555666556655555 443 23455556777788888888888888887764333 33355566666543
No 368
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=29.82 E-value=36 Score=17.37 Aligned_cols=40 Identities=3% Similarity=-0.018 Sum_probs=25.0
Q ss_pred hhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcc
Q 038114 16 SQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSL 56 (170)
Q Consensus 16 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 56 (170)
.|.++.-.++...+.++= ++.|.++....+++.-+-+...
T Consensus 5 ~Yvs~~v~~~I~~ive~r-~qeGA~~~dvs~Ssv~smLleL 44 (55)
T 1dp3_A 5 AYVSDEIVYKINKIVERR-RAEGAKSTDVSFSSISTMLLEL 44 (55)
T ss_dssp SCCCCTHHHHHHHHHHHH-HHHTCCSTTCCHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHHHHH-HHcCCCcccccHHHHHHHHHHH
Confidence 345555556666666666 7777777777776665554443
No 369
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=29.70 E-value=1.7e+02 Score=21.55 Aligned_cols=138 Identities=9% Similarity=0.007 Sum_probs=76.5
Q ss_pred HHhhhcccCC---HHHHHHHHHHHHhhC----CCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038114 13 FYNSQPIQNL---YNEALVAFDFLQNNT----NFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYIL 85 (170)
Q Consensus 13 li~~~~~~~~---~~~a~~~~~~m~~~~----~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 85 (170)
++...|..|. .+.|.+.|+.. ... .++||.. ..+...-.+. .++-..+++..+.. .+..--..++
T Consensus 203 ~l~~ac~~g~~~c~~~A~~~f~~~-~~~~~~~~i~~dlr--~~Vy~~~~~~--~~~~~~l~~~y~~s---~~~~ek~~ll 274 (419)
T 3rjo_A 203 LLLLACVHNYQPCVQRAEGYFRKW-KESNGNLSLPVDVT--LAVFAVGAQS--TEGWDFLYSKYQFS---LSSTEKSQIE 274 (419)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-HHTTTCSCCCGGGH--HHHHHHHTTS--HHHHHHHHHHHHHC---CCHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH-hhCCCCCCCCCCcc--eeEEeeeeCC--HHHHHHHHHHHhcC---CCHHHHHHHH
Confidence 4555566665 45778888776 433 2555544 2222222222 34444566666654 3566788899
Q ss_pred HHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCC-CChHHHHHHHH----HHHhCCCCCCHhhHHHHHHHh
Q 038114 86 NMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASP-SNANEAMSLFS----EMRDRELIPDGLTVRSLLCAC 160 (170)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~l~~----~m~~~~~~p~~~t~~~ll~~~ 160 (170)
.+++...+.+...++++......++ ++. .... ++.+.+.. ...+.|.+.+. .+.+ .+.++...+..++...
T Consensus 275 ~aL~~s~d~~ll~~~L~~~l~~~~i-r~q-D~~~-~~~~v~~n~~g~~~aw~fl~~nw~~l~~-~~~~~~~~~~~~i~~~ 350 (419)
T 3rjo_A 275 FALCRTQNKEKLQWLLDESFKGDKI-KTQ-EFPQ-ILTLIGRNPVGYPLAWQFLRKNWNKLVQ-KFELGSSSIAHMVMGT 350 (419)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTSSS-CGG-GHHH-HHHHHHTSTTTHHHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHT
T ss_pred HHcCCCCCHHHHHHHHHHHhCCCCC-chh-HHHH-HHHHHhcCcchHHHHHHHHHHHHHHHHH-HhCcCchhHHHHHHHH
Confidence 9999999999999988877654431 332 2333 33344433 23455555543 2222 2233446677777655
Q ss_pred cC
Q 038114 161 TS 162 (170)
Q Consensus 161 ~~ 162 (170)
..
T Consensus 351 ~~ 352 (419)
T 3rjo_A 351 TN 352 (419)
T ss_dssp TT
T ss_pred hh
Confidence 43
No 370
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=29.64 E-value=1.1e+02 Score=22.52 Aligned_cols=65 Identities=9% Similarity=0.149 Sum_probs=33.4
Q ss_pred hhHHHHHHHhhcccc--hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCC
Q 038114 44 STYACLISTCSSLRS--LQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 44 ~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 109 (170)
.||..+|.......+ .+++..+++.+.+-. .++...=.-|+-.+.|.-..++...+.+-|.+.+.
T Consensus 24 ~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~-~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~~ 90 (377)
T 3r88_A 24 PSWPQILGRLTDNRDLARGQAAWAMDQIMTGN-ARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAH 90 (377)
T ss_dssp CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhCC
Confidence 356666666554443 456666666665432 23343434444444444456665555555655443
No 371
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=29.41 E-value=1.6e+02 Score=23.15 Aligned_cols=74 Identities=11% Similarity=0.008 Sum_probs=28.1
Q ss_pred cchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHH
Q 038114 57 RSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEA 134 (170)
Q Consensus 57 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 134 (170)
.+.+......+++..+=..-+..--.-++..|.+.|-.+.|.++++.+..+-+ . +-..| ..+..|+|+|+++++
T Consensus 495 ~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l--~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQML--S-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC----------------------------
T ss_pred cchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH--H-CccHH-HHHHHHHHcCChhhc
Confidence 34444555555555432122334455566677777777777777776655443 1 22344 555666777766654
No 372
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=28.67 E-value=79 Score=20.31 Aligned_cols=11 Identities=9% Similarity=0.075 Sum_probs=4.3
Q ss_pred cCCCHHHHHHH
Q 038114 90 KCGSLEDARVV 100 (170)
Q Consensus 90 ~~~~~~~a~~~ 100 (170)
+.|+.+-+..+
T Consensus 118 ~~~~~~~~~~L 128 (240)
T 3eu9_A 118 QFGHTSIVAYL 128 (240)
T ss_dssp HTTCHHHHHHH
T ss_pred HcCHHHHHHHH
Confidence 33444433333
No 373
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=28.67 E-value=85 Score=17.84 Aligned_cols=45 Identities=7% Similarity=-0.056 Sum_probs=25.5
Q ss_pred cchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-----cCCCHHHHHHHHhh
Q 038114 57 RSLQLGRKVHDHILSSKSQPDVVLQNYILNMYG-----KCGSLEDARVVSDE 103 (170)
Q Consensus 57 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-----~~~~~~~a~~~~~~ 103 (170)
|++-+|.++++..-.....+....|-.||.... +.|+. |.+++.+
T Consensus 15 g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~ 64 (94)
T 2cwy_A 15 GRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRK 64 (94)
T ss_dssp TCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHH
T ss_pred CChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHH
Confidence 777777777777766543344555666655432 34554 4544443
No 374
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=28.21 E-value=84 Score=19.49 Aligned_cols=98 Identities=17% Similarity=0.104 Sum_probs=56.2
Q ss_pred cchhhHHHHHHHhhcccchHHHHHHHHHHHh-cCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChh
Q 038114 41 IRPSTYACLISTCSSLRSLQLGRKVHDHILS-SKSQP---DVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLA 116 (170)
Q Consensus 41 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~ 116 (170)
++......++..+... ++.+.++.+...+ .|+.+ ++.++..+++...+.|-++....+......++. .++
T Consensus 38 ~~~~~~dg~iq~fe~t--~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~~~w~~m~~~RN~----tvH 111 (146)
T 1jog_A 38 VQDTLIAGAIQKFEFV--YELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDMSKWVAYRDMRNI----TSH 111 (146)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCHHHHHHHHHHHTT----GGG
T ss_pred CCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcHHHHHHHHHHhhH----hcc
Confidence 3455666777776644 6667777776654 45543 367778888888888877666443333334443 345
Q ss_pred hHHHHH--HHHhCC-CChHHHHHHHHHHHhC
Q 038114 117 SWNAII--AGVASP-SNANEAMSLFSEMRDR 144 (170)
Q Consensus 117 ~~~~li--~~~~~~-g~~~~a~~l~~~m~~~ 144 (170)
+|+... ..|... ........+.+.|.+.
T Consensus 112 ~Y~e~~a~~v~~~I~~~l~~f~~l~~~l~~~ 142 (146)
T 1jog_A 112 TYDQEKAMAVYAQIDDFLIESSFLLEQLRQR 142 (146)
T ss_dssp TTSHHHHHHHHHTHHHHHHHHHHHHHHHHC-
T ss_pred cccHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 665543 223221 2455666666666543
No 375
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=28.19 E-value=1.2e+02 Score=19.45 Aligned_cols=128 Identities=10% Similarity=0.007 Sum_probs=64.8
Q ss_pred hHHHhhhcccCCHHHHHHHHHHHHhhCC----CCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHH-------
Q 038114 11 FTFYNSQPIQNLYNEALVAFDFLQNNTN----FRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV------- 79 (170)
Q Consensus 11 ~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~------- 79 (170)
++.+...+..|+.+-+..+++.- .... ...+..-.+.|. ..+..|+.+ +.+.+.+.|..++..
T Consensus 38 ~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~~~~~ 111 (232)
T 2rfa_A 38 ETALHIAALYDNLEAAMVLMEAA-PELVFEPMTSELYEGQTALH-IAVINQNVN----LVRALLARGASVSARATGSVFH 111 (232)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHC-GGGGGCCCCSTTTTTCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCCSGGGS
T ss_pred CCHHHHHHHcCCHHHHHHHHHcC-chhccccccccCCCCcCHHH-HHHHcCCHH----HHHHHHhCCCCCCcccCCccee
Confidence 33455555667776666666553 2110 111122233333 334445554 455555566555432
Q ss_pred --------HHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCC
Q 038114 80 --------LQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIP 148 (170)
Q Consensus 80 --------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p 148 (170)
.-.+.+...++.|+.+-+..+++.-...+ ..|..-.+ .+...+..|+.+.+..+++.+.+.|..+
T Consensus 112 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---~~d~~g~t-~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 112 YRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR---AQDSLGNT-VLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp CCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT---CCCTTSCC-HHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred ecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---CCCCCCCC-HHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 12234455566777776666665311111 12222333 3444567788888877888787776543
No 376
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=27.23 E-value=1.2e+02 Score=19.07 Aligned_cols=48 Identities=10% Similarity=0.149 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCC
Q 038114 60 QLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNV 109 (170)
Q Consensus 60 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 109 (170)
+.+..++..+.+.|+.-|..--..++....+.| ..-..+-.++.+.|+
T Consensus 49 e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~~--~G~~~I~~eL~~KGI 96 (162)
T 3dfg_A 49 EAAQAAVERLAGEGWQDDVRFAASVVRNRASSG--YGPLHIRAELGTHGL 96 (162)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTT--CCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcc--ccHHHHHHHHHHcCC
Confidence 345556666666666655544445555544422 233456666667776
No 377
>2qcx_A Transcriptional activator TENA; UP-DOWN bundle, hydrolase; HET: PF1; 2.20A {Bacillus subtilis} PDB: 1yak_A* 1yaf_A* 1to9_A* 1tyh_A
Probab=27.10 E-value=1.3e+02 Score=20.66 Aligned_cols=80 Identities=8% Similarity=-0.020 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHH-------Hh----hcccCCCCCCCChhhHHHHHHHHhCCCC---hHHHHHHHHH
Q 038114 75 QPDVVLQNYILNMYGKCGSLEDARVV-------SD----EMPQRNVIESPDLASWNAIIAGVASPSN---ANEAMSLFSE 140 (170)
Q Consensus 75 ~~~~~~~~~li~~~~~~~~~~~a~~~-------~~----~m~~~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~l~~~ 140 (170)
.|....|+..+...+..|++.++... +. .+.. .. .|+ ..|...|..|...+- .+....++++
T Consensus 133 ~pat~aYt~~l~~~a~~g~~~~~laAl~pC~w~Y~~ig~~l~~-~~--~~~-~~Y~~WI~~y~~~df~~~v~~~~~lld~ 208 (263)
T 2qcx_A 133 SPTAYSFTSHMYRSVLSGNFAEILAALLPCYWLYYEVGEKLLH-CD--PGH-PIYQKWIGTYGGDWFRQQVEEQINRFDE 208 (263)
T ss_dssp CHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTT-CC--CCS-HHHHHHHHHHSSHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh-cc--CCC-cHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45577888888888888887665432 22 2222 22 355 678899999887532 3333334443
Q ss_pred HHhCCCCCCHhhHHHHHHHhc
Q 038114 141 MRDRELIPDGLTVRSLLCACT 161 (170)
Q Consensus 141 m~~~~~~p~~~t~~~ll~~~~ 161 (170)
+. ..++......+..++.
T Consensus 209 l~---~~~s~~~~~~l~~~F~ 226 (263)
T 2qcx_A 209 LA---ENSTEEVRAKMKENFV 226 (263)
T ss_dssp HH---HTSCHHHHHHHHHHHH
T ss_pred HH---hhCCHHHHHHHHHHHH
Confidence 32 2234444444544443
No 378
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=26.54 E-value=74 Score=22.55 Aligned_cols=44 Identities=11% Similarity=0.084 Sum_probs=26.4
Q ss_pred HhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCC
Q 038114 101 SDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146 (170)
Q Consensus 101 ~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 146 (170)
+..+.+.|+ .|...++..++..+++.=.++.+.++|+-+...|.
T Consensus 211 ~~hL~~~~i--~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~ 254 (331)
T 3qye_A 211 YNHLEEHEI--GPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGT 254 (331)
T ss_dssp HHHHHHTTC--CGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCC--ChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCc
Confidence 334445555 56666666666666665566666666666665554
No 379
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.45 E-value=2.3e+02 Score=22.00 Aligned_cols=64 Identities=14% Similarity=0.027 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCC--hhhHHHH-HHHHhCCCChHHHHHHHHHHH
Q 038114 78 VVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPD--LASWNAI-IAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 78 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~--~~~~~~l-i~~~~~~g~~~~a~~l~~~m~ 142 (170)
...+|.+++.|...+.++.|..+..+..-.... .++ ..+|.-- -..+...+++.+|.+.+..-.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~-~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTD-VSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTT-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCccc-CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 678999999999999999999999987632110 011 1222211 133455677777777666543
No 380
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=26.14 E-value=1.6e+02 Score=20.35 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=14.3
Q ss_pred hhhHHHHHHHhhccc-chHHHHHHHHHHHhcC
Q 038114 43 PSTYACLISTCSSLR-SLQLGRKVHDHILSSK 73 (170)
Q Consensus 43 ~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~ 73 (170)
..++..++..+++.- .++.+.++|+.+...|
T Consensus 202 ~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g 233 (292)
T 4hl4_A 202 IFALSWLITWFGHVLSDFRHVVRLYDFFLACH 233 (292)
T ss_dssp GGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHhhhcCcHHHHHHHHHHHHHcC
Confidence 444444444444433 2455555555554444
No 381
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=26.12 E-value=82 Score=22.11 Aligned_cols=45 Identities=4% Similarity=0.015 Sum_probs=32.2
Q ss_pred HHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCC
Q 038114 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDREL 146 (170)
Q Consensus 100 ~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 146 (170)
++..+.+.|+ .|...++..++..+++.=.++.+.++|+-+...|.
T Consensus 176 L~~hL~~~~i--~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~ 220 (310)
T 3hzj_A 176 LHSHFSDLNL--EAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGL 220 (310)
T ss_dssp HHHHHHHHTC--CGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCC--ChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCc
Confidence 3444555677 77777778888777777677888888887777664
No 382
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=25.78 E-value=1.1e+02 Score=17.92 Aligned_cols=127 Identities=11% Similarity=0.069 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhh-CCCCcchhhHHHHHHHhhcccchHHHHHHHHHH---HhcCCCCCHHHHHHHHHHHHcC------CC
Q 038114 24 NEALVAFDFLQNN-TNFRIRPSTYACLISTCSSLRSLQLGRKVHDHI---LSSKSQPDVVLQNYILNMYGKC------GS 93 (170)
Q Consensus 24 ~~a~~~~~~m~~~-~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m---~~~~~~~~~~~~~~li~~~~~~------~~ 93 (170)
.+..++|..+ .. ..=..+..-+..++......-..+.+..++..+ -..+ ...+|..++..+... ..
T Consensus 8 ~~l~~~F~~~-D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~~~~d~~~---g~i~~~eF~~~~~~~~~~~~~~~ 83 (149)
T 2mys_C 8 DDFKEAFLLF-DRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNA---AAITFEEFLPMLQAAANNKDQGT 83 (149)
T ss_pred HHHHHHHHHh-CCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccccC---CcCcHHHHHHHHHHHhccCCcch
Confidence 3445556555 32 222344445555555554444455556666655 2222 344555555554442 23
Q ss_pred HHHHHHHHhhccc--CCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHh
Q 038114 94 LEDARVVSDEMPQ--RNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPDGLTVRSLLCAC 160 (170)
Q Consensus 94 ~~~a~~~~~~m~~--~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~ 160 (170)
.+....+|..+.. .|. .+..-+..++..+...-.-+++..++.. -.. .-...+|.-++..+
T Consensus 84 ~~~~~~~F~~~D~d~~G~---i~~~el~~~l~~~g~~~~~~~~~~~~~~-d~~--~dg~i~~~eF~~~~ 146 (149)
T 2mys_C 84 FEDFVEGLRVFDKEGNGT---VMGAELRHVLATLGEKMTEEEVEELMKG-QED--SNGCINYEAFVKHI 146 (149)
T ss_pred HHHHHHHHHHhCCCCCce---EcHHHHHHHHHHhCCCCCHHHHHHHHhh-CCC--CCCcEeHHHHHHHH
Confidence 4556666776643 233 2333344444443322244555556654 211 12234555555444
No 383
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=25.23 E-value=95 Score=17.23 Aligned_cols=33 Identities=6% Similarity=-0.052 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcc
Q 038114 23 YNEALVAFDFLQNNTNFRIRPSTYACLISTCSSL 56 (170)
Q Consensus 23 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 56 (170)
.+++...|..|-...++.|+. ||...+...+.-
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i~~D 48 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAFS-TWEKELHKIVFD 48 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSSS-CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHccC
Confidence 456666666653445554443 566655555443
No 384
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=25.22 E-value=3.1e+02 Score=23.23 Aligned_cols=56 Identities=4% Similarity=-0.064 Sum_probs=32.2
Q ss_pred HhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCC
Q 038114 14 YNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQ 75 (170)
Q Consensus 14 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 75 (170)
+-...+.-+.++..+++.+. .. ....-..++.+....|-.....-+.+.+....+.
T Consensus 316 Lv~~lR~~~~e~L~~l~~~~-~~-----~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l~ 371 (1056)
T 1lsh_A 316 LTAFLRNVDAGVLQSIWHKL-HQ-----QKDYRRWILDAVPAMATSEALLFLKRTLASEQLT 371 (1056)
T ss_dssp HHHHHTTSCHHHHHHHHHHH-TT-----SHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSC
T ss_pred HHHHHhcCCHHHHHHHHHHH-hc-----cHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCCC
Confidence 33445555666677777776 32 1233345778888887776555555555444333
No 385
>3k8p_D Protein transport protein SEC39; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Saccharomyces cerevisiae}
Probab=24.51 E-value=2.1e+02 Score=23.07 Aligned_cols=83 Identities=7% Similarity=0.013 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHH-----------hCCCChHHHHHHHHHHHh
Q 038114 75 QPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGV-----------ASPSNANEAMSLFSEMRD 143 (170)
Q Consensus 75 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~-----------~~~g~~~~a~~l~~~m~~ 143 (170)
.+.......+++++...|+++.|.+++..-. . +.....|..++.++ ...|.+.+|.++++-+..
T Consensus 397 Ls~~~ie~~iL~~LL~~g~FsLa~~ly~~~~---~--~ve~~v~dvl~aaF~efyDNASNgNrtrG~mKkA~ecL~lf~~ 471 (709)
T 3k8p_D 397 ISMDEKLYSILEILLQMNEFAYIEAIIERFD---Y--SNNTQIYELLVKFFWHFFNNASNGLRKEPEMKKASQTLQIIQK 471 (709)
T ss_dssp SCHHHHHHHHHHHHHHTTCHHHHHHHHHHTT---C--TTCHHHHHHHHHHHHHHHHHCSSCCTTSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCChHHHHHHHhccc---h--hhhHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHhccc
Confidence 3445677889999999999999999998652 2 33334566665442 334667888888877754
Q ss_pred C---CCCCCHhhHHHHHHHhcC
Q 038114 144 R---ELIPDGLTVRSLLCACTS 162 (170)
Q Consensus 144 ~---~~~p~~~t~~~ll~~~~~ 162 (170)
. .-.+......+||++..+
T Consensus 472 ~~~~s~~~~~~rl~aLL~At~a 493 (709)
T 3k8p_D 472 HMSQRAGTNLTKLEVLLEISDK 493 (709)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHH
Confidence 2 001234455666666543
No 386
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=24.41 E-value=64 Score=23.03 Aligned_cols=44 Identities=11% Similarity=0.137 Sum_probs=33.1
Q ss_pred HHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhCC
Q 038114 100 VSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDRE 145 (170)
Q Consensus 100 ~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 145 (170)
++..+.+.|+ .|...++..++..|++.=.++.+.++|+-+...|
T Consensus 215 L~~hL~~~~i--~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 215 LFAHFKKNNL--TPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHTTC--CGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCC--CccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 3445566677 7888888888888887777888888888877666
No 387
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.17 E-value=1.7e+02 Score=19.68 Aligned_cols=55 Identities=5% Similarity=0.119 Sum_probs=28.8
Q ss_pred cccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC-----HHHHHHHHhhcccCCC
Q 038114 55 SLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGS-----LEDARVVSDEMPQRNV 109 (170)
Q Consensus 55 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~m~~~~~ 109 (170)
|..+++.|.-++..|.+.|-.|....-..++.+.--.|. +..|...++....-|.
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 345667777777777777666644444444444443332 3444444444444444
No 388
>3tjy_A Effector protein hopab3; type III effector, hoppmal, structural genomics, PSI-biology; HET: MSE; 1.70A {Pseudomonas syringae PV} PDB: 3svi_A
Probab=23.76 E-value=1.1e+02 Score=17.25 Aligned_cols=24 Identities=17% Similarity=0.026 Sum_probs=13.5
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHh
Q 038114 137 LFSEMRDRELIPDGLTVRSLLCAC 160 (170)
Q Consensus 137 l~~~m~~~~~~p~~~t~~~ll~~~ 160 (170)
-|=.|...|+..+...-+.|=.++
T Consensus 50 HFPnM~~~gI~~~seLA~elR~aL 73 (94)
T 3tjy_A 50 HFPDMLPCGIDRNSELAIALREAL 73 (94)
T ss_dssp HCTTHHHHCCCTTSHHHHHHHHHH
T ss_pred HCcccccccCCCccHHHHHHHHHH
Confidence 344566666666666555554444
No 389
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=23.62 E-value=1.2e+02 Score=17.69 Aligned_cols=47 Identities=9% Similarity=0.032 Sum_probs=30.4
Q ss_pred cchHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 038114 57 RSLQLGRKVHDHILSS-KSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQ 106 (170)
Q Consensus 57 ~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 106 (170)
+..+.+.+++....+. | ...|...|+.++-+.+.-+-|..+......
T Consensus 55 ~~~eq~~~mL~~W~~r~G---~~AT~~~L~~AL~~~~~~dvae~l~~~~~~ 102 (110)
T 1wxp_A 55 DMKMRAKQLLVAWQDQEG---VHATPENLINALNKSGLSDLAESLTNDNET 102 (110)
T ss_dssp SHHHHHHHHHHHHHHHHG---GGCCHHHHHHHHHHTTCHHHHHHHHCCCSS
T ss_pred CHHHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHcCcHHHHHHHHHHhhc
Confidence 3345666666655443 3 234677888888888888888777765554
No 390
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=23.59 E-value=97 Score=21.07 Aligned_cols=115 Identities=7% Similarity=-0.023 Sum_probs=57.5
Q ss_pred HHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHH
Q 038114 12 TFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV--LQNYILNMYG 89 (170)
Q Consensus 12 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~ 89 (170)
+.+...++.|+.+-+..+++. |..++...-.+.+...+..|+.+ +.+.+.+.|..++.. .-.+.+...+
T Consensus 33 t~L~~A~~~g~~~~v~~Ll~~-----g~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~ga~~~~~d~~g~t~L~~A~ 103 (285)
T 3kea_A 33 SASYYAIADNNVRLVCTLLNA-----GALKNLLENEFPLHQAATLEDTK----IVKILLFSGLDDSQFDDKGNTALYYAV 103 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHT-----TGGGSCCTTCCHHHHHTTSSSCH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhC-----CCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCcHHHHHH
Confidence 345555666776655544443 43343332234455556667766 444455566655422 1123345556
Q ss_pred cCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHH
Q 038114 90 KCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138 (170)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~ 138 (170)
..|+.+-+.-+++.-...+ ..+..-+.+.+...+..|+.+-+..++
T Consensus 104 ~~g~~~~v~~Ll~~ga~~~---~~~~~g~~t~L~~A~~~~~~~~v~~Ll 149 (285)
T 3kea_A 104 DSGNMQTVKLFVKKNWRLM---FYGKTGWKTSFYHAVMLNDVSIVSYFL 149 (285)
T ss_dssp HTTCHHHHHHHHHHCGGGG---GCSSSGGGSHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHhcCCCCC---ccCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 7778777666666521111 122233334455555667765544444
No 391
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=23.58 E-value=1.7e+02 Score=20.48 Aligned_cols=58 Identities=12% Similarity=0.179 Sum_probs=44.4
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 038114 47 ACLISTCSSLRSLQLGRKVHDHILSS-KSQPDVVLQNYILNMYGKCGSLEDARVVSDEM 104 (170)
Q Consensus 47 ~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 104 (170)
.-+=..|....++.....++..|... .-.|++...--++++|.|--+-..|.+.++.-
T Consensus 177 ~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~ 235 (268)
T 2fv2_A 177 TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQC 235 (268)
T ss_dssp HHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred hhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 44556677778888888888888764 34788888889999999988777777777643
No 392
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=23.55 E-value=1.4e+02 Score=18.62 Aligned_cols=68 Identities=6% Similarity=-0.097 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHcCCC---HHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 038114 75 QPDVVLQNYILNMYGKCGS---LEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLFSEMRDR 144 (170)
Q Consensus 75 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 144 (170)
.|+..+-=..--++.++.+ ..++..++++....+. .-.....=.+.-++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~--~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE--SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCC--STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc--cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5666665556667777765 5567778887765433 222333444557889999999999999988754
No 393
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=23.51 E-value=1.1e+02 Score=17.33 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=8.7
Q ss_pred HHHHHcCCCHHHHHHHHh
Q 038114 85 LNMYGKCGSLEDARVVSD 102 (170)
Q Consensus 85 i~~~~~~~~~~~a~~~~~ 102 (170)
+...+..|+.+-+.-+++
T Consensus 44 L~~A~~~~~~~~v~~Ll~ 61 (123)
T 3aaa_C 44 LHYAADCGQLEILEFLLL 61 (123)
T ss_dssp HHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 334445556555444443
No 394
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=23.19 E-value=78 Score=25.29 Aligned_cols=48 Identities=10% Similarity=-0.000 Sum_probs=32.5
Q ss_pred chhHhHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcc
Q 038114 7 TQLRFTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSL 56 (170)
Q Consensus 7 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 56 (170)
....|.+|.-|.++|.+++|.++.++. ... ++--...|...+..++..
T Consensus 152 g~p~Wa~IyY~LR~G~~~~A~e~~~~~-~~~-~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 152 GVPIWALIFYLLRAGLIKEALQVLVEN-KAN-IKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp TEEHHHHHHHHHTTTCHHHHHHHHHHT-GGG-C-----CHHHHHHHC---
T ss_pred CcccHHHHHHHHhcCCHHHHHHHHHHh-hhh-HhhhhHHHHHHHHHHHhC
Confidence 345899999999999999999999887 422 111224777788888744
No 395
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=23.03 E-value=1e+02 Score=20.90 Aligned_cols=123 Identities=10% Similarity=-0.040 Sum_probs=56.0
Q ss_pred hHHHhhhcccCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHH--HHHHHHHHH
Q 038114 11 FTFYNSQPIQNLYNEALVAFDFLQNNTNFRIRPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVV--LQNYILNMY 88 (170)
Q Consensus 11 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~ 88 (170)
++.+...+..|+.+-+..+++.- ...--..+..-++.+..++........-.++...+.+.|..++.. .-.+.+...
T Consensus 112 ~T~Lh~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A 190 (276)
T 4hbd_A 112 NTALHYSVSHANFPVVQQLLDSG-VCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLA 190 (276)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTS-CCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHCC-CCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHH
Confidence 34444555667766555444433 111112333445555555543333333444555565555433321 112334555
Q ss_pred HcCCCHHHHHHHHhhcccCCCCCCCChhhHHHHHHHHhCCCChHHHHHHH
Q 038114 89 GKCGSLEDARVVSDEMPQRNVIESPDLASWNAIIAGVASPSNANEAMSLF 138 (170)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~ 138 (170)
++.|+.+-+..+++.-...+ ..|..-++.+..+ +..|+.+-+..++
T Consensus 191 ~~~g~~~~v~~Ll~~gad~n---~~d~~G~TpLh~A-~~~g~~~iv~~Ll 236 (276)
T 4hbd_A 191 VSHGRVDVVKALLACEADVN---VQDDDGSTALMCA-CEHGHKEIAGLLL 236 (276)
T ss_dssp HHTTCHHHHHHHHHTTCCTT---CCCTTSCCHHHHH-HHHTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHhCCCCCC---CCCCCCCCHHHHH-HHCCCHHHHHHHH
Confidence 66777776666665421111 1233334444444 3446655444444
No 396
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=22.05 E-value=64 Score=18.53 Aligned_cols=18 Identities=17% Similarity=0.041 Sum_probs=8.2
Q ss_pred CCcchhhHHHHHHHhhcc
Q 038114 39 FRIRPSTYACLISTCSSL 56 (170)
Q Consensus 39 ~~p~~~~~~~li~~~~~~ 56 (170)
+.++..+...+++-..+.
T Consensus 40 ~~is~GtlYp~L~rLe~~ 57 (99)
T 2co5_A 40 IDISDGVLYPLIDSLIDD 57 (99)
T ss_dssp CBCCHHHHHHHHHHHHHT
T ss_pred CCCCCCcHHHHHHHHHHC
Confidence 444444444444444433
No 397
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=21.76 E-value=1.7e+02 Score=18.92 Aligned_cols=49 Identities=6% Similarity=-0.115 Sum_probs=33.3
Q ss_pred chhhHHHHHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 038114 42 RPSTYACLISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKC 91 (170)
Q Consensus 42 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 91 (170)
....++-++..++.-.-.+++.-.++...+.|. .+..+|---++.+++.
T Consensus 110 ~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 110 KTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQ 158 (174)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 334567778887777778888888888777773 4566666556655553
No 398
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=21.51 E-value=1.2e+02 Score=20.25 Aligned_cols=21 Identities=5% Similarity=-0.097 Sum_probs=15.6
Q ss_pred cCCCHHHHHHHHhhcccCCCC
Q 038114 90 KCGSLEDARVVSDEMPQRNVI 110 (170)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~~~~ 110 (170)
...++....++|+.++..|+.
T Consensus 122 ~~~~l~~i~~~Y~~Lk~~G~~ 142 (226)
T 3zyq_A 122 NEPKYKVVQDTYQIMKVEGHV 142 (226)
T ss_dssp TCGGGHHHHHHHHHHHHHTCC
T ss_pred CCcchHHHHHHHHHHHhcCCC
Confidence 344577788888888888875
No 399
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=21.31 E-value=2.3e+02 Score=20.19 Aligned_cols=25 Identities=24% Similarity=0.100 Sum_probs=12.7
Q ss_pred ChhhHHHHHHHHhCCCChHHHHHHH
Q 038114 114 DLASWNAIIAGVASPSNANEAMSLF 138 (170)
Q Consensus 114 ~~~~~~~li~~~~~~g~~~~a~~l~ 138 (170)
|+.....+-..|.+.|++.+|+..|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 3444455555555555555555433
No 400
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=21.16 E-value=2.3e+02 Score=20.17 Aligned_cols=125 Identities=10% Similarity=-0.098 Sum_probs=74.9
Q ss_pred hhcccCCHHHHHH----HHHHHHhhCCCCcchhhHHHHHHHhhcccc-----hHHHHHHHHHHHhcC--CCCCHHHHHHH
Q 038114 16 SQPIQNLYNEALV----AFDFLQNNTNFRIRPSTYACLISTCSSLRS-----LQLGRKVHDHILSSK--SQPDVVLQNYI 84 (170)
Q Consensus 16 ~~~~~~~~~~a~~----~~~~m~~~~~~~p~~~~~~~li~~~~~~~~-----~~~a~~~~~~m~~~~--~~~~~~~~~~l 84 (170)
.+.+.|+...|-+ +.+-. .+.+++++......++..+..... ..-..+...+..+.| ..-|+.....+
T Consensus 62 ~ll~~~Q~~sa~DLa~llvev~-~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~ 140 (312)
T 2wpv_A 62 SFLKAKQGGSGTDLIFYLLEVY-DLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTI 140 (312)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-HHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Confidence 3444555554433 34555 667888999888888888766331 222333444444433 23478889999
Q ss_pred HHHHHcCCCHHHHHHHHhh-----------c-----ccC--CCCCCCChhhHHHHHHHHhCCCChHHHHHHHHHHH
Q 038114 85 LNMYGKCGSLEDARVVSDE-----------M-----PQR--NVIESPDLASWNAIIAGVASPSNANEAMSLFSEMR 142 (170)
Q Consensus 85 i~~~~~~~~~~~a~~~~~~-----------m-----~~~--~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 142 (170)
-..|.+.+++.+|+.-|-- | .+. |...+++...-.+++.-+ ..|+...|..+|....
T Consensus 141 a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL-~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 141 GSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYL-FISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-HTTBHHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH-HhcCHHHHHHHHHHHH
Confidence 9999999999998875421 1 111 321123333334444444 4588888888888765
No 401
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=21.14 E-value=1.3e+02 Score=18.82 Aligned_cols=69 Identities=4% Similarity=-0.015 Sum_probs=30.2
Q ss_pred ccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHH--HHhhcccCCCCCCCChhhHHHHHHHHhCC
Q 038114 56 LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARV--VSDEMPQRNVIESPDLASWNAIIAGVASP 128 (170)
Q Consensus 56 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~--~~~~m~~~~~~~~p~~~~~~~li~~~~~~ 128 (170)
.|..+.|.++++.....- ...+...|+.+.....++.+.+ +....+......+-+..+|+.++.-+-+.
T Consensus 67 ~g~~~~A~~F~~~f~~~~----~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL~~fL~~~ 137 (156)
T 2nxp_A 67 NQHENEAKSFFEKFHGDQ----ECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEK 137 (156)
T ss_dssp TTCHHHHHHHHHHHGGGS----CGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHhHHh----HHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHHHHHHHHc
Confidence 455566666665554321 1244455555544444433321 22222322222244455555555554443
No 402
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=20.68 E-value=1.1e+02 Score=18.03 Aligned_cols=30 Identities=10% Similarity=0.097 Sum_probs=18.0
Q ss_pred cccchhHhHHHhhhcccCCHHHHHHHHHHH
Q 038114 4 NLKTQLRFTFYNSQPIQNLYNEALVAFDFL 33 (170)
Q Consensus 4 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 33 (170)
.+.+...-.|+.+.....+.+++..+|+.+
T Consensus 7 ~~~~~~~d~L~~ail~l~~~ee~~~ffedL 36 (107)
T 3frw_A 7 KIRTEEVDHLFEAILCLKNKEECYTFFEDV 36 (107)
T ss_dssp -CCCHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 334433223677777777777777777776
No 403
>3hgl_A Effector protein hopab2; five helices, hypersensitive response elicitation, ligase, secreted, UBL conjugation, UBL conjugation pathway; 1.90A {Pseudomonas syringae PV} PDB: 3hgk_E
Probab=20.51 E-value=1.2e+02 Score=16.75 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=11.8
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHH
Q 038114 137 LFSEMRDRELIPDGLTVRSLLCA 159 (170)
Q Consensus 137 l~~~m~~~~~~p~~~t~~~ll~~ 159 (170)
-|=+|...|+..+...-+.|=.+
T Consensus 52 HFPnm~~~Gi~~~S~LA~~lR~a 74 (85)
T 3hgl_A 52 HFPNMPMHGISRDSELAIELRGA 74 (85)
T ss_dssp HCTTHHHHCCCTTCHHHHHHHHH
T ss_pred HChhhhhccCCCCCHHHHHHHHH
Confidence 34455555665555555544443
No 404
>3cl3_A ORF K13, KS-vflip; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Human herpesvirus 8}
Probab=20.47 E-value=1.9e+02 Score=18.83 Aligned_cols=90 Identities=10% Similarity=0.056 Sum_probs=50.2
Q ss_pred ccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHh----hccc--CCCCCCCChhhHHHHHHHH----
Q 038114 56 LRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSD----EMPQ--RNVIESPDLASWNAIIAGV---- 125 (170)
Q Consensus 56 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~----~m~~--~~~~~~p~~~~~~~li~~~---- 125 (170)
.+..+.+..+|..+.+.+.. +. ..|...+.+.|+.+...+++. .+.. ... .+....|..++...
T Consensus 37 ~~~le~i~dlf~~L~~~~~l-~~---~fL~ElL~~I~R~DLl~~~l~~~~~~ve~~l~~~--~~~~s~yr~lL~~Ise~L 110 (183)
T 3cl3_A 37 QPTLAQLIGALRALKEEGRL-TF---PLLAECLFRAGRRDLLRDLLHLDPRFLERHLAGT--MSYFSPYQLTVLHVDGEL 110 (183)
T ss_dssp SCCHHHHHHHHHHHHTTTCS-CH---HHHHHHHHHTTCHHHHTTTTCCCHHHHHHHHTSS--CCSSCHHHHHHHHHHHHC
T ss_pred ccchHhHHHHHHHHHHcCCC-CH---HHHHHHHHHcChHHHHHHHHccCHHHHHHhhccc--ccchhHHHHHHHHHHHhc
Confidence 34566666777777776633 23 455555666666666644443 1111 122 34456666665433
Q ss_pred -----------h-----CCCChHHHHHHHHHHHhCC-CCCCHh
Q 038114 126 -----------A-----SPSNANEAMSLFSEMRDRE-LIPDGL 151 (170)
Q Consensus 126 -----------~-----~~g~~~~a~~l~~~m~~~~-~~p~~~ 151 (170)
| +......+.++|.+|.+.+ +.|+-.
T Consensus 111 t~edl~~lKFl~~~~ipk~e~~~s~ldlf~~LEk~~~l~~~nl 153 (183)
T 3cl3_A 111 CARDIRSLIFLSKDTIGSRSTPQTFLHWVYCMENLDLLGPTDV 153 (183)
T ss_dssp CHHHHHHHHHHHSSCTTCSSCCSSHHHHHHHHHTTTSCSTTCC
T ss_pred CHHHHHHHHHHCccccCcccccCCHHHHHHHHHHhCCCCCchH
Confidence 1 1144556888999998887 455443
No 405
>1rtw_A Transcriptional activator, putative; PF1337, TENA, thiamin, structural genomics, PSI, protein STR initiative; HET: MP5; 2.35A {Pyrococcus furiosus} SCOP: a.132.1.3
Probab=20.46 E-value=1.9e+02 Score=19.00 Aligned_cols=90 Identities=6% Similarity=-0.063 Sum_probs=49.0
Q ss_pred HHHHHHHhcCCC------CCHHHHHHHHHHHHcCCCHHHHHHH-------Hh----hcccCCCCCCCChhhHHHHHHHHh
Q 038114 64 KVHDHILSSKSQ------PDVVLQNYILNMYGKCGSLEDARVV-------SD----EMPQRNVIESPDLASWNAIIAGVA 126 (170)
Q Consensus 64 ~~~~~m~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~-------~~----~m~~~~~~~~p~~~~~~~li~~~~ 126 (170)
.++. +.+.|+. |....|+..+...+..|++.++... +. .+.+. . .|+ ..|...|..|+
T Consensus 83 ~lh~-~~~~Gi~~~~~~~p~t~aY~~~l~~~a~~~~~~~~laAl~pc~~~Y~~i~~~l~~~-~--~~~-~~y~~Wi~~y~ 157 (220)
T 1rtw_A 83 FEKK-AQELGISLNGEIDWRAKSYVNYLLSVASLGSFLEGFTALYCEEKAYYEAWKWVREN-L--KER-SPYQEFINHWS 157 (220)
T ss_dssp HHHH-HHHTTCCSSSCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH-C--SSC-CTTHHHHHHHH
T ss_pred HHHH-HHHCCCCCCCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHhc-c--CCC-chHHHHHHHhC
Confidence 4444 6666663 4567788888888888887665432 22 22222 1 244 56888899888
Q ss_pred CCC---ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhc
Q 038114 127 SPS---NANEAMSLFSEMRDRELIPDGLTVRSLLCACT 161 (170)
Q Consensus 127 ~~g---~~~~a~~l~~~m~~~~~~p~~~t~~~ll~~~~ 161 (170)
..+ ..+....+++++.. .++......+..++.
T Consensus 158 ~~~f~~~v~~~~~~ld~~~~---~~~~~~~~~~~~~f~ 192 (220)
T 1rtw_A 158 SQEFGEYVKRIEKILNSLAE---KHGEFEKERAREVFK 192 (220)
T ss_dssp SHHHHHHHHHHHHHHHHHHH---TSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHh---hCCHHHHHHHHHHHH
Confidence 853 23333444444322 234444444544443
No 406
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=20.43 E-value=78 Score=14.46 Aligned_cols=22 Identities=9% Similarity=0.108 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 038114 78 VVLQNYILNMYGKCGSLEDARVVSDEMP 105 (170)
Q Consensus 78 ~~~~~~li~~~~~~~~~~~a~~~~~~m~ 105 (170)
+.-=++||++| ++|..-|....
T Consensus 8 iWDdtALIKay------DKAVaSfk~al 29 (37)
T 3s6n_M 8 IWDDTALIKAY------DKAVASFKHAL 29 (37)
T ss_pred hhhhHHHHHHH------HHHHHHHHHHH
Confidence 33446788877 66666666443
No 407
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=20.27 E-value=3.8e+02 Score=22.38 Aligned_cols=110 Identities=8% Similarity=-0.060 Sum_probs=66.2
Q ss_pred HHHHhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHhhcccCCCC------------------
Q 038114 49 LISTCSSLRSLQLGRKVHDHILSSKSQPDVVLQNYILNMYGKCGSLEDARVVSDEMPQRNVI------------------ 110 (170)
Q Consensus 49 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~------------------ 110 (170)
++..|...+..+.+.++... ++.++..-=.+-.+|..+|++++|...|++.-. |+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 55556666666655443322 233443322455568899999999999987642 110
Q ss_pred CCC---ChhhHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCC----HhhHHHHHHHhcCCC
Q 038114 111 ESP---DLASWNAIIAGVASPSNANEAMSLFSEMRDRELIPD----GLTVRSLLCACTSPS 164 (170)
Q Consensus 111 ~~p---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~----~~t~~~ll~~~~~~g 164 (170)
.++ ...-|..++.-+-+.+.++-+.++-+.-.+.--.-| ...|..++++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 011 112578889999999999988887776554311112 224777777766544
No 408
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=20.26 E-value=3.2e+02 Score=21.50 Aligned_cols=89 Identities=8% Similarity=-0.018 Sum_probs=49.0
Q ss_pred hhCCCC-cchhhHHHHHHHhhcccchHHHHHHHHH-----H-HhcCCC---------------CC-HHHHHHHHHHHHcC
Q 038114 35 NNTNFR-IRPSTYACLISTCSSLRSLQLGRKVHDH-----I-LSSKSQ---------------PD-VVLQNYILNMYGKC 91 (170)
Q Consensus 35 ~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~-----m-~~~~~~---------------~~-~~~~~~li~~~~~~ 91 (170)
++..++ -|..+|-..++-|...|......+++.. + +..|+. ++ ...+-.++...++.
T Consensus 19 ~e~~~~~~d~~~f~~~~~~~l~~g~~~~l~eilqDe~n~~l~~~igWdLv~~lv~~l~~~~~~~~~~~~s~~iL~~la~l 98 (596)
T 4f52_E 19 EEQDFKEEDFGLFQLAGQRCIEEGHTDQLLEIIQNEKNKVIIKNMGWNLVGPVVRCLLCKDKEDSKRKVYFLIFDLLVKL 98 (596)
T ss_dssp C---------CHHHHHHHHHHSSSCSHHHHHHHTTCTTHHHHHHTGGGGHHHHHHHHHTSCCCSSSTHHHHHHHHHHHHH
T ss_pred hccCCChhHHHHHHHHHHHHcCcccHHHHHHHHhCcchhHHHHHcCcccHHHHHHHHhhccccccchhHHHHHHHHHHHh
Confidence 334444 3666888889999888888877777665 1 122321 11 24566678888999
Q ss_pred CCHHHHHHHHhh-cccCCCCCCCChhhHHHHHHHH
Q 038114 92 GSLEDARVVSDE-MPQRNVIESPDLASWNAIIAGV 125 (170)
Q Consensus 92 ~~~~~a~~~~~~-m~~~~~~~~p~~~~~~~li~~~ 125 (170)
|++.+..--+-+ +....- .-....|+.++.++
T Consensus 99 cnPrEvil~llE~le~~~~--~~~~~~f~~LL~~L 131 (596)
T 4f52_E 99 CNPKELLLGLLELIEEPSG--KQISQSILLLLQPL 131 (596)
T ss_dssp SCGGGHHHHHGGGGTSCCG--GGHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccC--cchHHHHHHHHHHH
Confidence 998887544443 332222 11234555666544
No 409
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=20.10 E-value=2.3e+02 Score=19.85 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=13.8
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHhcC
Q 038114 47 ACLISTCSSLRSLQLGRKVHDHILSSK 73 (170)
Q Consensus 47 ~~li~~~~~~~~~~~a~~~~~~m~~~~ 73 (170)
..++..+++.=.++.+.++|+.+...|
T Consensus 206 rWfl~lF~~~~p~~~vlRlWD~~~~~~ 232 (294)
T 3qwl_A 206 LWFKRCFAGCLPESSLQRVWDKVVSGS 232 (294)
T ss_dssp HHHTSTTTTTSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHhCC
Confidence 344444445455555555555555433
Done!