BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038117
(500 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 300 bits (768), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 166/458 (36%), Positives = 258/458 (56%), Gaps = 30/458 (6%)
Query: 51 FETFFYNQTIDHFSYGPESYQTFPQRYVINSKFWGGGNSPILAFLGAEAPIDDNIQLSGF 110
+ ++ Q +DHF + + +TF QRY++ K+W IL + G E I +GF
Sbjct: 3 YSVLYFQQKVDHFGF--NTVKTFNQRYLVADKYWKKNGGSILFYTGNEGDIIWFCNNTGF 60
Query: 111 TYENAHQFKALIVILEHRYYGKSVPFGSRKAALKNARHRGYFNSAQALADYASILLHIKD 170
++ A + KA++V EHRYYG+S+PFG + K++RH + S QALAD+A ++ H+K
Sbjct: 61 MWDVAEELKAMLVFAEHRYYGESLPFGDN--SFKDSRHLNFLTSEQALADFAELIKHLKR 118
Query: 171 KY-NATHAPVIAIGASYGGELATWFRLKYPHVVIGSLASSAPILYYGDITPWTTYHSVVS 229
A + PVIAIG SYGG LA WFR+KYPH+V+G+LA+SAPI + D+ P + +V+
Sbjct: 119 TIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFMKIVT 178
Query: 230 KDFRDTSEECFQTIKKSWSEIDNIASKPDGLAILSKKFKTCTPL--KNTTELKDGLDTVY 287
DFR + C ++I +SW I+ +++ GL L+ C+PL ++ LKD + +
Sbjct: 179 TDFRKSGPHCSESIHRSWDAINRLSNTGSGLQWLTGALHLCSPLTSQDIQHLKDWISETW 238
Query: 288 SEAAQYDTP--SNI-------PVKRICNAIENAPNCGDDILCKIAAGVVEADSLEYD-GN 337
A D P SN P+K +C ++N PN D +L + + +A ++ Y+
Sbjct: 239 VNLAMVDYPYASNFLQPLPAWPIKVVCQYLKN-PNVSDSLLLQ---NIFQALNVYYNYSG 294
Query: 338 NSRCY-INEDRTGDESDEGWEWQSCSEMVVPMGKDK-NSMYQPEPWNLTKYIKNCKEQYG 395
+C I+E T GW +Q+C+E+V+P + + M++P WNL + +C +Q+G
Sbjct: 295 QVKCLNISETATSSLGTLGWSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQWG 354
Query: 396 VSPRPSWVLTYYGGHDIKLILRRSTSNIIFSNGMRDPFSRGGWVKTYHFFDLSFSQDLNL 455
V PRPSW+ T YGG +I S +NI+FSNG DP+S GG K D + ++
Sbjct: 355 VRPRPSWITTMYGGKNIS-----SHTNIVFSNGELDPWSGGGVTKD--ITDTLVAVTISE 407
Query: 456 GSHCLDLDEAKKSDPDWLVQQRKTEVKIMQGWITQYYD 493
G+H LDL DP ++ R EV+ M+ WI +YD
Sbjct: 408 GAHHLDLRTKNALDPMSVLLARSLEVRHMKNWIRDFYD 445
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 221 bits (563), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 145/457 (31%), Positives = 226/457 (49%), Gaps = 31/457 (6%)
Query: 50 GFETFFYNQTIDHFSYGPESYQTFPQRYVINSKFWGGGNSPILAFLGAEAPIDDNIQLSG 109
GF+ F+ Q +DHF++ +TFPQR++++ +FW G PI + G E + S
Sbjct: 7 GFQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFANNSA 66
Query: 110 FTYENAHQFKALIVILEHRYYGKSVPFGSRKAALKNARHRGYFNSAQALADYASILLHIK 169
F E A + AL+V EHRYYGKS+PFG++ H QALAD+A +L ++
Sbjct: 67 FVAELAAERGALLVFAEHRYYGKSLPFGAQS---TQRGHTELLTVEQALADFAELLRALR 123
Query: 170 DKYNATHAPVIAIGASYGGELATWFRLKYPHVVIGSLASSAPILYYGDITPWTTYHSVVS 229
A AP IA G SYGG L+ + R+KYPH+V G+LA+SAP+L + + V+
Sbjct: 124 RDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSNQFFRDVT 183
Query: 230 KDFRDTSEECFQTIKKSWSEIDNIASKPDGLAILSKKFKTCTPL---KNTTELKDGLDTV 286
DF S +C Q +++++ +I ++ + + +F TC PL K+ T+L
Sbjct: 184 ADFEGQSPKCTQGVREAFRQIKDLFLQ-GAYDTVRWEFGTCQPLSDEKDLTQLFMFARNA 242
Query: 287 YSEAAQYDTPSNIPVKRICNAIENAPNCGDDILCKIA---AGVVEADSLEYDGNNSR-CY 342
++ A D P P + N G D L A G+ L Y+ + S CY
Sbjct: 243 FTVLAMMDYP--YPTDFLGPLPANPVKVGCDRLLSEAQRITGLRALAGLVYNASGSEHCY 300
Query: 343 -------INEDRTG---DESDEGWEWQSCSEMVVPMGKDK-NSMYQPEPWNLTKYIKNCK 391
D TG W++Q+C+E+ + + M+ P+ + C
Sbjct: 301 DIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDMFPDLPFTDELRQRYCL 360
Query: 392 EQYGVSPRPSWVLTYYGGHDIKLILRRSTSNIIFSNGMRDPFSRGGWVKTYHFFDLSFSQ 451
+ +GV PRP W+LT + G D+ R+ SNIIFSNG DP++ GG + ++ +
Sbjct: 361 DTWGVWPRPDWLLTSFWGGDL-----RAASNIIFSNGNLDPWAGGGIRRNLSASVIAVT- 414
Query: 452 DLNLGSHCLDLDEAKKSDPDWLVQQRKTEVKIMQGWI 488
+ G+H LDL + DP +V+ RK E I+ W+
Sbjct: 415 -IQGGAHHLDLRASHPEDPASVVEARKLEATIIGEWV 450
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 219 bits (557), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 145/457 (31%), Positives = 226/457 (49%), Gaps = 31/457 (6%)
Query: 50 GFETFFYNQTIDHFSYGPESYQTFPQRYVINSKFWGGGNSPILAFLGAEAPIDDNIQLSG 109
GF+ F+ Q +DHF++ +TFPQR++++ +FW G PI + G E + S
Sbjct: 4 GFQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFANNSA 63
Query: 110 FTYENAHQFKALIVILEHRYYGKSVPFGSRKAALKNARHRGYFNSAQALADYASILLHIK 169
F E A + AL+V EHRYYGKS+PFG++ H QALAD+A +L ++
Sbjct: 64 FVAELAAERGALLVFAEHRYYGKSLPFGAQS---TQRGHTELLTVEQALADFAELLRALR 120
Query: 170 DKYNATHAPVIAIGASYGGELATWFRLKYPHVVIGSLASSAPILYYGDITPWTTYHSVVS 229
A AP IA G SYGG L+ + R KYPH+V G+LA+SAP+L + + V+
Sbjct: 121 RDLGAQDAPAIAFGGSYGGXLSAYLRXKYPHLVAGALAASAPVLAVAGLGDSNQFFRDVT 180
Query: 230 KDFRDTSEECFQTIKKSWSEIDNIASKPDGLAILSKKFKTCTPL---KNTTELKDGLDTV 286
DF S +C Q +++++ +I ++ + + +F TC PL K+ T+L
Sbjct: 181 ADFEGQSPKCTQGVREAFRQIKDLFLQ-GAYDTVRWEFGTCQPLSDEKDLTQLFXFARNA 239
Query: 287 YSEAAQYDTPSNIPVKRICNAIENAPNCGDDILCKIA---AGVVEADSLEYDGNNSR-CY 342
++ A D P P + N G D L A G+ L Y+ + S CY
Sbjct: 240 FTVLAXXDYP--YPTDFLGPLPANPVKVGCDRLLSEAQRITGLRALAGLVYNASGSEHCY 297
Query: 343 -------INEDRTG---DESDEGWEWQSCSEMVVPMGKDKNSMYQPE-PWNLTKYIKNCK 391
D TG W++Q+C+E+ + + + P+ P+ + C
Sbjct: 298 DIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDXFPDLPFTDELRQRYCL 357
Query: 392 EQYGVSPRPSWVLTYYGGHDIKLILRRSTSNIIFSNGMRDPFSRGGWVKTYHFFDLSFSQ 451
+ +GV PRP W+LT + G D+ R+ SNIIFSNG DP++ GG + ++ +
Sbjct: 358 DTWGVWPRPDWLLTSFWGGDL-----RAASNIIFSNGNLDPWAGGGIRRNLSASVIAVT- 411
Query: 452 DLNLGSHCLDLDEAKKSDPDWLVQQRKTEVKIMQGWI 488
+ G+H LDL + DP +V+ RK E I+ W+
Sbjct: 412 -IQGGAHHLDLRASHPEDPASVVEARKLEATIIGEWV 447
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 67 PESYQTFPQRYVIN--SKFWGGG--NSPILAFLGAEAPIDDNIQLSGFTYENAHQFKALI 122
PE+ FP+ Y+ + +F ++ FLGAE P +++ F +
Sbjct: 174 PEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDING 233
Query: 123 VILEHRYYGKSVPFGSRKAALKN 145
+IL R K + G++ A +K
Sbjct: 234 LILVEREGQKKMVIGNKGAKIKT 256
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 67 PESYQTFPQRYVIN--SKFWGGG--NSPILAFLGAEAPIDDNIQLSGFTYENAHQFKALI 122
PE+ FP+ Y+ + +F ++ FLGAE P +++ F +
Sbjct: 171 PEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDING 230
Query: 123 VILEHRYYGKSVPFGSRKAALK 144
+IL R K + G++ A +K
Sbjct: 231 LILVEREGQKKMVIGNKGAKIK 252
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,864,097
Number of Sequences: 62578
Number of extensions: 692410
Number of successful extensions: 1600
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1583
Number of HSP's gapped (non-prelim): 6
length of query: 500
length of database: 14,973,337
effective HSP length: 103
effective length of query: 397
effective length of database: 8,527,803
effective search space: 3385537791
effective search space used: 3385537791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)