Query 038121
Match_columns 354
No_of_seqs 155 out of 1992
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 13:09:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 1.5E-53 5.2E-58 384.8 23.7 288 36-346 3-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 9.8E-54 3.3E-58 387.0 20.2 278 43-350 4-290 (303)
3 1okc_A ADP, ATP carrier protei 100.0 1E-33 3.6E-38 255.0 18.2 196 141-349 5-204 (297)
4 2lck_A Mitochondrial uncouplin 100.0 2.1E-33 7.1E-38 253.7 15.4 185 146-349 4-195 (303)
5 3vjj_A P9-1; 3.00A {Rice black 22.0 37 0.0013 28.8 1.7 35 259-314 274-308 (368)
6 2acm_A Mucin-1; auto-catalytic 18.8 28 0.00095 21.9 0.3 20 183-202 40-59 (66)
7 2bnk_A Early protein GP16.7; D 13.4 1.5E+02 0.0051 18.4 2.5 47 158-205 19-65 (67)
8 3tgu_G UQCRQ, mitochondrial ub 13.3 1.9E+02 0.0063 19.5 3.3 32 202-233 38-69 (81)
9 2khf_A PLNJ; anti-microbial, b 12.1 84 0.0029 15.4 0.9 13 315-327 12-24 (26)
10 3f2e_A SIRV coat protein; four 11.7 87 0.003 20.8 1.2 35 296-330 6-44 (100)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.5e-53 Score=384.81 Aligned_cols=288 Identities=31% Similarity=0.508 Sum_probs=243.3
Q ss_pred cchhhHHHHHHHhHHHHHHhhhccchHHHHHHHHccCCC-----CCCCCcHHHHHHHHHHccCcccccccchHHHhhHhh
Q 038121 36 AVLSICKSLVAGGVAGAVSRTAVAPLERLKILLQVQNPH-----SIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVP 110 (354)
Q Consensus 36 ~~~~~~~~~~~g~~a~~~~~~v~~Pld~ik~~~q~~~~~-----~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~l~~~~ 110 (354)
+.++.+..+++|++||+++.++++|+|++|+|+|++... ...+.+.++.+++++++||++|||||+.+++++.++
T Consensus 3 ~~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~ 82 (297)
T 1okc_A 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFP 82 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHH
Confidence 345678899999999999999999999999999997532 235789999999999999999999999999999999
Q ss_pred hhhhhHHhHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCC--CCCcCcHHHH
Q 038121 111 NSAVKFFSYEQASKGILYLYQHHTGNEDAELTPLLRLGAGACAGIIAMSATYPMDMVRGRLTVQTEKS--PYRYRGIFHA 188 (354)
Q Consensus 111 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~i~~P~d~ik~~~q~~~~~~--~~~~~~~~~~ 188 (354)
..+++|++|+.+|+.+..... .+..........+++|++||+++.++++|+|++|+|+|++.... ...|.+++++
T Consensus 83 ~~~~~f~~ye~~k~~~~~~~~---~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~ 159 (297)
T 1okc_A 83 TQALNFAFKDKYKQIFLGGVD---RHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNC 159 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC---TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHH
T ss_pred HHHHHHHHHHHHHHHhccccC---cccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHH
Confidence 999999999999654443211 01111123467899999999999999999999999999985422 3568999999
Q ss_pred HHHHHhhccccccccchhHHhhhhhhhhhhHHHHHHHHHHHHHhhCCCCCCCCCCccHHHHHHHHHHHHHHHhhhcccHH
Q 038121 189 LSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLACGAAAGTVGQTVAYPLD 268 (354)
Q Consensus 189 ~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~P~d 268 (354)
+++|+++||++|||||+.+++++.++..+++|.+||.+++.+.+. ...+....+++|++||++++++++|+|
T Consensus 160 ~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--------~~~~~~~~~~~g~~ag~~a~~~t~P~d 231 (297)
T 1okc_A 160 ITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--------KNVHIIVSWMIAQTVTAVAGLVSYPFD 231 (297)
T ss_dssp HHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--------GCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC--------CCccHHHHHHHHHHHHHHHHHhcChHH
Confidence 999999999999999999999999999999999999999966432 234567789999999999999999999
Q ss_pred HHHHHHHhhccccccccccCCCCCCCCCCCCcHHHHHHHHHhhhcccccccchhhhhhccccchhhHHHHHHHHHHHh
Q 038121 269 VIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDIL 346 (354)
Q Consensus 269 ~i~tr~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~~ly~G~~~~~~~~~~~~~i~~~~~~~~~~~~ 346 (354)
+||+|||++.... .....|.++++|+++|+++||++|||||+.|+++|. +..+++|.+||.+|+.+
T Consensus 232 vvktr~q~~~~~~-----------~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 232 TVRRRMMMQSGRK-----------GADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHTTTTCC-----------GGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HHHHHHhhcCCCC-----------CCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 9999999875321 123468999999999999999999999999999996 57899999999998754
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=9.8e-54 Score=386.95 Aligned_cols=278 Identities=26% Similarity=0.359 Sum_probs=247.0
Q ss_pred HHHHHhHHHHHHhhhccchHHHHHHHHccCCC--------CCCCCcHHHHHHHHHHccCcccccccchHHHhhHhhhhhh
Q 038121 43 SLVAGGVAGAVSRTAVAPLERLKILLQVQNPH--------SIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAV 114 (354)
Q Consensus 43 ~~~~g~~a~~~~~~v~~Pld~ik~~~q~~~~~--------~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~l~~~~~~~~ 114 (354)
.+++|++||+++.++++|+|++|+|+|++... ..++.+.++.+++++++||++|||||+.+++++.++..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999997642 2368899999999999999999999999999999999999
Q ss_pred hHHhHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCC-CCCCcCcHHHHHHHHH
Q 038121 115 KFFSYEQASKGILYLYQHHTGNEDAELTPLLRLGAGACAGIIAMSATYPMDMVRGRLTVQTEK-SPYRYRGIFHALSTVL 193 (354)
Q Consensus 115 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~i~~P~d~ik~~~q~~~~~-~~~~~~~~~~~~~~i~ 193 (354)
+|.+|+.+|+. +... . ...+....+++|++||+++.++++|+|++|+|+|++... ....|.+.++++++|+
T Consensus 84 ~f~~ye~~k~~-~~~~------~-~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~ 155 (303)
T 2lck_A 84 RIGLYDSVKQF-YTKG------S-EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIA 155 (303)
T ss_dssp TTTHHHHHHHH-HSCC------C-SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhcC------C-cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHH
Confidence 99999999543 3221 0 135677889999999999999999999999999998653 2346899999999999
Q ss_pred hhccccccccchhHHhhhhhhhhhhHHHHHHHHHHHHHhhCCCCCCCCCCccHHHHHHHHHHHHHHHhhhcccHHHHHHH
Q 038121 194 REEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLACGAAAGTVGQTVAYPLDVIRRR 273 (354)
Q Consensus 194 ~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~P~d~i~tr 273 (354)
+++|++|||||+.+++++.++..+++|.+||.+++.+.+. .....+....+++|++||++++++++|+|+||+|
T Consensus 156 ~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~------~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktr 229 (303)
T 2lck_A 156 REEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKA------NLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTR 229 (303)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT------TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhc------cCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 9999999999999999999999999999999999987653 1223456788999999999999999999999999
Q ss_pred HHhhccccccccccCCCCCCCCCCCCcHHHHHHHHHhhhcccccccchhhhhhccccchhhHHHHHHHHHHHhchhc
Q 038121 274 MQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDILGVEI 350 (354)
Q Consensus 274 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~~ly~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 350 (354)
||.+.. ..|.++++|+++|+++||++|||||+.|+++|.+|..+++|.+||.+|+.+.+.+
T Consensus 230 lq~~~~----------------~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~ 290 (303)
T 2lck_A 230 YMNSAL----------------GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAY 290 (303)
T ss_dssp HTTCCS----------------SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHhccc----------------cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 998752 2488999999999999999999999999999999999999999999999886544
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1e-33 Score=255.05 Aligned_cols=196 Identities=27% Similarity=0.375 Sum_probs=167.4
Q ss_pred cchHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCC----CCCcCcHHHHHHHHHhhccccccccchhHHhhhhhhhh
Q 038121 141 LTPLLRLGAGACAGIIAMSATYPMDMVRGRLTVQTEKS----PYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYV 216 (354)
Q Consensus 141 ~~~~~~~~~g~~ag~~~~~i~~P~d~ik~~~q~~~~~~----~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~ 216 (354)
.+....+++|++||+++.++++|+|++|+|+|++.... ...|.+.++++++++++||++|||||+.+.+++.++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 45667899999999999999999999999999986421 24689999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCCCCCccHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhccccccccccCCCCCCCCC
Q 038121 217 GLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPL 296 (354)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~P~d~i~tr~q~~~~~~~~~~~~~~~~~~~~~ 296 (354)
+++|.+||.+++.+...... ...........+++|++||+++.++++|+|+||+|+|++.... ....
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~--~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~-----------~~~~ 151 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDR--HKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG-----------AAQR 151 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCT--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS-----------TTTC
T ss_pred HHHHHHHHHHHHHhccccCc--ccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC-----------CcCc
Confidence 99999999999965432110 0111123567899999999999999999999999999975321 1234
Q ss_pred CCCcHHHHHHHHHhhhcccccccchhhhhhccccchhhHHHHHHHHHHHhchh
Q 038121 297 EYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDILGVE 349 (354)
Q Consensus 297 ~~~~~~~~~~~i~~~eG~~~ly~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 349 (354)
.|.++++++++|+++||++|||||+.+++++.+|..++.|.+||.+|+.+.+.
T Consensus 152 ~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~ 204 (297)
T 1okc_A 152 EFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP 204 (297)
T ss_dssp SCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG
T ss_pred CCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 68999999999999999999999999999999999999999999999988653
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.1e-33 Score=253.69 Aligned_cols=185 Identities=29% Similarity=0.525 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCC-------CCCcCcHHHHHHHHHhhccccccccchhHHhhhhhhhhhh
Q 038121 146 RLGAGACAGIIAMSATYPMDMVRGRLTVQTEKS-------PYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGL 218 (354)
Q Consensus 146 ~~~~g~~ag~~~~~i~~P~d~ik~~~q~~~~~~-------~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~ 218 (354)
.+++|++||+++.++++|+|++|+|+|++.... ...|.++++++++|+++||+++||||+.+.+++.++..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999986532 3468999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCccHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhccccccccccCCCCCCCCCCC
Q 038121 219 NFAVYESLKVWLIKTKPLGLAEDSELSVTTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEY 298 (354)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~P~d~i~tr~q~~~~~~~~~~~~~~~~~~~~~~~ 298 (354)
+|.+||.+++.+.+.. ...+....+++|++||+++.++++|+|+||+|+|++.... ....|
T Consensus 84 ~f~~ye~~k~~~~~~~-------~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~------------~~~~~ 144 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGS-------EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAG------------GGRRY 144 (303)
T ss_dssp TTTHHHHHHHHHSCCC-------SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCC------------CSSSC
T ss_pred HHHHHHHHHHHHhcCC-------cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccC------------CCCCC
Confidence 9999999999886431 1356788999999999999999999999999999986421 13468
Q ss_pred CcHHHHHHHHHhhhcccccccchhhhhhccccchhhHHHHHHHHHHHhchh
Q 038121 299 NGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDILGVE 349 (354)
Q Consensus 299 ~~~~~~~~~i~~~eG~~~ly~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 349 (354)
.+.++++++|+++||++|||||+.+++++.++..++.|.+||.+|+.+.+.
T Consensus 145 ~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~ 195 (303)
T 2lck_A 145 QSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKA 195 (303)
T ss_dssp CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred CCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999998654
No 5
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=21.96 E-value=37 Score=28.77 Aligned_cols=35 Identities=20% Similarity=0.425 Sum_probs=24.4
Q ss_pred HHhhhcccHHHHHHHHHhhccccccccccCCCCCCCCCCCCcHHHHHHHHHhhhcc
Q 038121 259 VGQTVAYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGF 314 (354)
Q Consensus 259 ~~~~~~~P~d~i~tr~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~ 314 (354)
++++=.||||.+|-.++ +. -++...+++.+.++|+
T Consensus 274 LaTFdnypfdllRfqL~--Sl-------------------istp~~I~e~i~K~GL 308 (368)
T 3vjj_A 274 LATFDNYPFDLLRFQLS--SL-------------------ISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHCTTCBHHHHHHHCS--SC-------------------CCCCHHHHHHHHHSCS
T ss_pred eecCCCCCHHHHHHHhh--hh-------------------ccChHHHHHHHHhcCc
Confidence 44556699999866554 32 2445678889999985
No 6
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=18.83 E-value=28 Score=21.88 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=17.0
Q ss_pred CcHHHHHHHHHhhccccccc
Q 038121 183 RGIFHALSTVLREEGPRALY 202 (354)
Q Consensus 183 ~~~~~~~~~i~~~~G~~gly 202 (354)
+++.+.+.+||+++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 56788899999999998876
No 7
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=13.45 E-value=1.5e+02 Score=18.44 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=30.4
Q ss_pred hhhhcchhHHHHHHHhcCCCCCCCcCcHHHHHHHHHhhccccccccch
Q 038121 158 MSATYPMDMVRGRLTVQTEKSPYRYRGIFHALSTVLREEGPRALYRGW 205 (354)
Q Consensus 158 ~~i~~P~d~ik~~~q~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~ 205 (354)
+-+--|.|+|.-.. .+.-+......+..+.-+.-|+-+.-+.+|+|.
T Consensus 19 SnIrIP~DIIEdl~-~~~L~te~EVmnYiEnqR~~WKLEN~KKly~g~ 65 (67)
T 2bnk_A 19 SNIRIPSDIIEDLV-NQRLQSEQEVLNYIETQRTYWKLENQKKLYRGS 65 (67)
T ss_dssp TTCCCCHHHHHHHH-TTCCCCSHHHHHHHHHHHHHHHHHTTSCCCCSC
T ss_pred cCCcCcHHHHHHHH-HHhhhhHHHHHHHHHhhHhHHhhhhhHHHHhcc
Confidence 44667999887665 333222233455566667777777888899985
No 8
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=13.29 E-value=1.9e+02 Score=19.52 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=25.1
Q ss_pred ccchhHHhhhhhhhhhhHHHHHHHHHHHHHhh
Q 038121 202 YRGWFPSVIGVVPYVGLNFAVYESLKVWLIKT 233 (354)
Q Consensus 202 y~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (354)
+|-+...++..+|..++.+.+|+..++.....
T Consensus 38 ~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l 69 (81)
T 3tgu_G 38 WRRFSSQVFKVAPPFLGAYLLYSWGTQEFERL 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445568889999999999999999877654
No 9
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=12.11 E-value=84 Score=15.39 Aligned_cols=13 Identities=15% Similarity=0.493 Sum_probs=8.6
Q ss_pred cccccchhhhhhc
Q 038121 315 GALYKGLVPNSVK 327 (354)
Q Consensus 315 ~~ly~G~~~~~~~ 327 (354)
+|||.|=.-+.+|
T Consensus 12 kgfydgeagrair 24 (26)
T 2khf_A 12 KGFYDGEAGRAIR 24 (26)
T ss_dssp HHHTTTHHHHTTT
T ss_pred hhcccchhhhHhh
Confidence 5788886665554
No 10
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=11.66 E-value=87 Score=20.75 Aligned_cols=35 Identities=11% Similarity=0.340 Sum_probs=26.3
Q ss_pred CCCCcHHHHHHHHHhhhcc----cccccchhhhhhcccc
Q 038121 296 LEYNGMIDAFRKTVRHEGF----GALYKGLVPNSVKVVP 330 (354)
Q Consensus 296 ~~~~~~~~~~~~i~~~eG~----~~ly~G~~~~~~~~~~ 330 (354)
+++++.-+-+..++.+.|+ +..|.||+....|..-
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaraln 44 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARALN 44 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHHH
Confidence 4667777888888999997 5599999988877643
Done!