Query 038122
Match_columns 130
No_of_seqs 106 out of 1030
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 13:10:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038122.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038122hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gtk_A Porphobilinogen deamina 100.0 6.8E-57 2.3E-61 372.7 11.0 130 1-130 66-242 (313)
2 3ecr_A Porphobilinogen deamina 100.0 4.7E-55 1.6E-59 367.0 10.4 130 1-130 84-264 (364)
3 3kzg_A Arginine 3RD transport 73.3 6.4 0.00022 27.8 5.2 28 38-65 138-165 (237)
4 2ozz_A Hypothetical protein YH 58.5 7.3 0.00025 30.2 3.2 73 39-117 143-219 (231)
5 3tql_A Arginine-binding protei 47.9 10 0.00035 26.0 2.3 26 38-63 138-163 (227)
6 2y7i_A STM4351; arginine-bindi 44.2 42 0.0014 23.0 5.0 27 38-64 140-166 (229)
7 4h5g_A Amino acid ABC superfam 42.8 23 0.00077 25.4 3.5 23 38-60 151-173 (243)
8 3del_B Arginine binding protei 36.0 34 0.0012 23.9 3.5 66 38-105 145-211 (242)
9 3qax_A Probable ABC transporte 31.2 38 0.0013 23.8 3.1 28 38-65 166-193 (268)
10 4gvo_A LMO2349 protein; struct 30.9 13 0.00044 26.7 0.5 23 40-62 153-175 (243)
11 2v25_A Major cell-binding fact 28.3 71 0.0024 22.2 4.1 60 38-104 180-239 (259)
12 2yjp_A Putative ABC transporte 25.7 43 0.0015 24.7 2.7 26 38-63 192-217 (291)
13 3kbr_A Cyclohexadienyl dehydra 23.7 39 0.0013 23.5 2.0 64 38-105 153-216 (239)
14 4eq9_A ABC transporter substra 23.0 52 0.0018 22.8 2.5 25 39-63 150-174 (246)
15 4ab5_A Transcriptional regulat 22.3 59 0.002 21.8 2.7 17 2-18 50-66 (222)
16 3k4u_A Binding component of AB 21.6 39 0.0013 23.7 1.6 25 38-62 143-167 (245)
17 4i62_A Amino acid ABC transpor 21.4 77 0.0026 22.2 3.2 26 38-63 178-203 (269)
18 2ql3_A Probable transcriptiona 20.8 34 0.0012 23.1 1.1 15 3-17 48-62 (209)
19 2gvk_A Heme peroxidase; PC0426 20.1 77 0.0026 25.2 3.2 58 56-128 70-134 (317)
No 1
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=100.00 E-value=6.8e-57 Score=372.65 Aligned_cols=130 Identities=44% Similarity=0.618 Sum_probs=128.4
Q ss_pred ChHhhhcCCCcEEeecCCCCCCCCCCCeeeccccCCC-------------------------------------------
Q 038122 1 TEEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------------------------- 37 (130)
Q Consensus 1 ~e~aLl~g~iDiAVHSlKDlP~~~~~gl~i~a~l~R~------------------------------------------- 37 (130)
+|+||++|+||||||||||||+++|+||+++|+++|+
T Consensus 66 Le~aLl~g~iDiAVHSlKDvPt~lp~gl~l~av~~RedprDalV~~~~~~l~~LP~Ga~VGTSSlRR~aQL~~~rPdl~i 145 (313)
T 1gtk_A 66 LEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLII 145 (313)
T ss_dssp HHHHHHTTSCSEEEEEGGGSCSCCCTTEEEEEECCCCCCCEEEECSSCSSGGGCCTTCEEECCCHHHHHHHHHHCTTSEE
T ss_pred HHHHHHcCCCcEEEecCCCCCCCCCCCcEEEEEecCCCcceEEEECCCCChhhCCCCCEEecCCHHHHHHHHHHCCCCEE
Confidence 5899999999999999999999999999999999998
Q ss_pred ----CcHHHHHHhhhcCCcceeehhHhhhhhcCCCCCceeecCCCCCccCcccchhhhhhccCcHHHHHHHhccCCHHHH
Q 038122 38 ----GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETR 113 (130)
Q Consensus 38 ----GNv~TRl~KL~~g~~daiiLA~AGL~RLg~~~~i~~~l~~~~~~pA~gQGaiaie~r~~d~~~~~ll~~i~~~~t~ 113 (130)
|||+|||+||++|+|||||||+|||+|||+.++++++|++++|+||||||+||||||++|+++.++|+.|||++|+
T Consensus 146 ~~lRGNV~TRL~KL~~g~~DaiiLA~AGL~RLgl~~~i~~~l~~~~~lPA~gQGalaIe~r~~d~~~~~ll~~l~d~~t~ 225 (313)
T 1gtk_A 146 RSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETA 225 (313)
T ss_dssp ECCCSCHHHHHHHHHTTSCSEEEEEHHHHHHTTCGGGCSEECCTTTSCCCTTTTCEEEEEETTCHHHHHHHGGGCCHHHH
T ss_pred EeCCCCHHHHHHHhhCCCCCEEEHhhhHHHHcCCccccceeeChhhcCCCcCCceEEEEEccCcHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHcCCCC
Q 038122 114 QAVVCERAFLGTLDGSC 130 (130)
Q Consensus 114 ~~~~aER~~l~~l~ggC 130 (130)
.++.+||+||+.|+|||
T Consensus 226 ~~~~aERa~l~~L~GgC 242 (313)
T 1gtk_A 226 LRVTAERAMNTRLEGGC 242 (313)
T ss_dssp HHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 99999999999999999
No 2
>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A*
Probab=100.00 E-value=4.7e-55 Score=367.03 Aligned_cols=130 Identities=38% Similarity=0.604 Sum_probs=125.7
Q ss_pred ChHhhhcCCCcEEeecCCCCCCCCCCCeeeccccCCC-------------------------------------------
Q 038122 1 TEEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------------------------- 37 (130)
Q Consensus 1 ~e~aLl~g~iDiAVHSlKDlP~~~~~gl~i~a~l~R~------------------------------------------- 37 (130)
+|+||++|+||||||||||||+++|+||+++|+++|+
T Consensus 84 Le~ALl~g~iDiAVHSlKDvPt~lp~gl~l~av~~ReDprDalV~~~~~~~~~l~~LP~Ga~VGTSSlRR~aQL~~~rPd 163 (364)
T 3ecr_A 84 LEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPHDAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPH 163 (364)
T ss_dssp HHHHHHTTSCSEEEEEGGGSCSSCCTTEEEEEECCCCCCCEEEEECTTCTTCCTTTSCTTCEEECCCHHHHHHHHHHCTT
T ss_pred HHHHHhcCCCCEEEECcccCCCCCCCCcEEEEEcCCCCcceEEEEcCccCCCChhHCCCcCEEeCCcHHHHHHHHHHCCC
Confidence 5899999999999999999999999999999999988
Q ss_pred -------CcHHHHHHhhhc-CCcceeehhHhhhhhcCCCCCceeecCCCCCccCcccchhhhhhccCcHHHHHHHhccCC
Q 038122 38 -------GNVQARLRKLNE-GVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNH 109 (130)
Q Consensus 38 -------GNv~TRl~KL~~-g~~daiiLA~AGL~RLg~~~~i~~~l~~~~~~pA~gQGaiaie~r~~d~~~~~ll~~i~~ 109 (130)
|||+|||+||++ |+|||||||+|||+|||+.++++++|++++|+||||||+||||||++|.++.++|+.|||
T Consensus 164 L~i~~lRGNV~TRL~KL~~gg~~DAiILA~AGL~RLgl~~~i~~~l~~~~~lPA~gQGaLaIe~R~~D~~~~~ll~~l~d 243 (364)
T 3ecr_A 164 LEFRSIRGNLNTRLRKLDEQQEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD 243 (364)
T ss_dssp SEEECCCSCHHHHHHHHHHSSSCSEEEEEHHHHHHTTCGGGCCEECCTTTCCBCTTTTCEEEEEETTCHHHHHHHHTTCC
T ss_pred CEEEECCCCHHHHHHHhhcCCCcCEEEehhhHHhhcCCchheeEecChhhcCCccccceeEEEEecCCHHHHHHHHHcCC
Confidence 999999999999 599999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHcCCCC
Q 038122 110 EETRQAVVCERAFLGTLDGSC 130 (130)
Q Consensus 110 ~~t~~~~~aER~~l~~l~ggC 130 (130)
++|+.++.+||+||+.|+|||
T Consensus 244 ~~T~~~v~AERa~l~~L~GGC 264 (364)
T 3ecr_A 244 PETLLRCIAERAFLRHLEGGC 264 (364)
T ss_dssp HHHHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999
No 3
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=73.29 E-value=6.4 Score=27.82 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=22.6
Q ss_pred CcHHHHHHhhhcCCcceeehhHhhhhhc
Q 038122 38 GNVQARLRKLNEGVIQATLSALAGLKCL 65 (130)
Q Consensus 38 GNv~TRl~KL~~g~~daiiLA~AGL~RL 65 (130)
.+.+.-++.|.+|++||++.....+..+
T Consensus 138 ~~~~~~~~~l~~G~vDa~~~~~~~~~~~ 165 (237)
T 3kzg_A 138 ELIQDMLLGLSNNQVDASLMDYEAAKYW 165 (237)
T ss_dssp SSHHHHHHHHHTTSSSEEEEEHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCEEEeCcHHHHHH
Confidence 5778889999999999999876655444
No 4
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=58.53 E-value=7.3 Score=30.19 Aligned_cols=73 Identities=15% Similarity=0.187 Sum_probs=43.5
Q ss_pred cHHHHHHhhhcCCcceeeh----hHhhhhhcCCCCCceeecCCCCCccCcccchhhhhhccCcHHHHHHHhccCCHHHHH
Q 038122 39 NVQARLRKLNEGVIQATLS----ALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQ 114 (130)
Q Consensus 39 Nv~TRl~KL~~g~~daiiL----A~AGL~RLg~~~~i~~~l~~~~~~pA~gQGaiaie~r~~d~~~~~ll~~i~~~~t~~ 114 (130)
+...=+..|.+|++||+|. ..|. ..-++. ...+.........+..+ |-+|++|..+.+++++.=+.+...
T Consensus 143 ~y~~~i~~L~~G~IDA~Iwn~d~~~a~-~~~~l~---~~~l~~~~~~~~~~eav--I~v~k~n~~L~~~ln~~I~~~~v~ 216 (231)
T 2ozz_A 143 SYHESLQRIVKGDVDAVIWNVVAENEL-TMLGLE---ATPLTDDPRFLQATEAV--VLTRVDDYPMQQLLRAVVDKHALL 216 (231)
T ss_dssp CHHHHHHHHHHTSCCEEEEEC-CHHHH-HHTTEE---EEECCSCHHHHHTTCEE--EEEETTCHHHHHHHHHHCCHHHHH
T ss_pred CHHHHHHHHHcCCccEEEEcCcchhhh-cCCCcc---eeccccccccccCCceE--EEEECCCHHHHHHHHHHhHHHHHH
Confidence 3366677888999999999 4444 122111 11222211123334444 566899999999999876766654
Q ss_pred HHH
Q 038122 115 AVV 117 (130)
Q Consensus 115 ~~~ 117 (130)
.+.
T Consensus 217 ~~Q 219 (231)
T 2ozz_A 217 AHQ 219 (231)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 5
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=47.91 E-value=10 Score=26.02 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=20.9
Q ss_pred CcHHHHHHhhhcCCcceeehhHhhhh
Q 038122 38 GNVQARLRKLNEGVIQATLSALAGLK 63 (130)
Q Consensus 38 GNv~TRl~KL~~g~~daiiLA~AGL~ 63 (130)
.+.+.-++.|.+|.+|+++.....+.
T Consensus 138 ~~~~~~~~~l~~grvDa~~~~~~~~~ 163 (227)
T 3tql_A 138 PSEEDALMDLTSGRVDAVVGDTPLIK 163 (227)
T ss_dssp SSHHHHHHHHTTTSSSEEESCHHHHH
T ss_pred CCHHHHHHHHHcCCcCEEEeChHHHH
Confidence 56677889999999999998665544
No 6
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=44.20 E-value=42 Score=22.98 Aligned_cols=27 Identities=7% Similarity=0.181 Sum_probs=21.7
Q ss_pred CcHHHHHHhhhcCCcceeehhHhhhhh
Q 038122 38 GNVQARLRKLNEGVIQATLSALAGLKC 64 (130)
Q Consensus 38 GNv~TRl~KL~~g~~daiiLA~AGL~R 64 (130)
.+.+.-++.|.+|++|+++.....+..
T Consensus 140 ~~~~~~~~~l~~grvDa~~~~~~~~~~ 166 (229)
T 2y7i_A 140 DSYLNAFTDLKNNRLEGVFGDVAAIGK 166 (229)
T ss_dssp SCHHHHHHHHHTTSCSEEEEEHHHHHH
T ss_pred CCHHHHHHHHHcCCcCEEEechHHHHH
Confidence 677888999999999999986665443
No 7
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=42.78 E-value=23 Score=25.41 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=19.0
Q ss_pred CcHHHHHHhhhcCCcceeehhHh
Q 038122 38 GNVQARLRKLNEGVIQATLSALA 60 (130)
Q Consensus 38 GNv~TRl~KL~~g~~daiiLA~A 60 (130)
-|.+.-++.|.+|++|+++.-..
T Consensus 151 ~~~~~~~~~l~~GrvD~~~~d~~ 173 (243)
T 4h5g_A 151 TNMGEAVNELQAGKIDAVHMDEP 173 (243)
T ss_dssp SCHHHHHHHHHHTSCSEEEEEHH
T ss_pred CCHHHHHHHHHcCCccEEEecHH
Confidence 57788899999999999987543
No 8
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=36.03 E-value=34 Score=23.86 Aligned_cols=66 Identities=12% Similarity=0.045 Sum_probs=37.1
Q ss_pred CcHHHHHHhhhcCCcceeehhHhhhhhcCCCCCceeecCCCCCccCc-ccchhhhhhccCcHHHHHHHh
Q 038122 38 GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAV-AQGAIGIACTSNDKKMAKYLG 105 (130)
Q Consensus 38 GNv~TRl~KL~~g~~daiiLA~AGL~RLg~~~~i~~~l~~~~~~pA~-gQGaiaie~r~~d~~~~~ll~ 105 (130)
.+.+.-++.|.+|++|+++....-+..+-.......++. ..+.+.+ +.| +++-++++++.+.+.+.
T Consensus 145 ~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~k~~~~l~~~l~ 211 (242)
T 3del_B 145 DSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTAT-IDLPEDQWVLG-YGIGVASDRPALALKIE 211 (242)
T ss_dssp SSHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEE-EECCGGGCEEE-EEEEEETTCHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCeEEec-CccCcccccce-EEEEEeCCCHHHHHHHH
Confidence 678888999999999999997665554422211112221 1111111 011 56777787765554443
No 9
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=31.18 E-value=38 Score=23.85 Aligned_cols=28 Identities=4% Similarity=-0.021 Sum_probs=22.5
Q ss_pred CcHHHHHHhhhcCCcceeehhHhhhhhc
Q 038122 38 GNVQARLRKLNEGVIQATLSALAGLKCL 65 (130)
Q Consensus 38 GNv~TRl~KL~~g~~daiiLA~AGL~RL 65 (130)
.+.+.-++.|.+|++|+++.-..-+..+
T Consensus 166 ~~~~~~~~~l~~G~vDa~~~~~~~~~~~ 193 (268)
T 3qax_A 166 DSTLEVIMEVRYGKSPVAVLEPSVGRVV 193 (268)
T ss_dssp SCHHHHHHHHHTTSSSEEEECHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCEEEecHHHHHHH
Confidence 6778889999999999999866655444
No 10
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=30.89 E-value=13 Score=26.74 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=16.9
Q ss_pred HHHHHHhhhcCCcceeehhHhhh
Q 038122 40 VQARLRKLNEGVIQATLSALAGL 62 (130)
Q Consensus 40 v~TRl~KL~~g~~daiiLA~AGL 62 (130)
.+.-++.|.+|.+||+|.-...+
T Consensus 153 ~~~~~~~L~~GrvDa~i~~~~~~ 175 (243)
T 4gvo_A 153 SNDTANQLKTGRADATISTPFAV 175 (243)
T ss_dssp GGSHHHHHHHTSCSBEEECHHHH
T ss_pred hHHHHHHHHcCCccEEEccHHHH
Confidence 34458889999999998755444
No 11
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=28.29 E-value=71 Score=22.15 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=35.1
Q ss_pred CcHHHHHHhhhcCCcceeehhHhhhhhcCCCCCceeecCCCCCccCcccchhhhhhccCcHHHHHHH
Q 038122 38 GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYL 104 (130)
Q Consensus 38 GNv~TRl~KL~~g~~daiiLA~AGL~RLg~~~~i~~~l~~~~~~pA~gQGaiaie~r~~d~~~~~ll 104 (130)
.+..+-++.|.+|++|+++.....+..+--... .++ +..+ ...-+++-++++++.+.+.+
T Consensus 180 ~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~--~~~-~~~~----~~~~~~~~~~k~~~~l~~~~ 239 (259)
T 2v25_A 180 PDYPSIKAALDAKRVDAFSVDKSILLGYVDDKS--EIL-PDSF----EPQSYGIVTKKDDPAFAKYV 239 (259)
T ss_dssp SSHHHHHHHHHTTSSSEEEEEHHHHTTTCCTTE--EEC-SCCC----SEEEECCEEETTCHHHHHHH
T ss_pred CCHHHHHHHHHcCCCcEEEecHHHHHHHHHhCC--Ccc-cccc----ccceeEEEEcCCCHHHHHHH
Confidence 556778888999999999987766555432211 122 1111 22335567777775544433
No 12
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=25.70 E-value=43 Score=24.66 Aligned_cols=26 Identities=19% Similarity=0.012 Sum_probs=20.6
Q ss_pred CcHHHHHHhhhcCCcceeehhHhhhh
Q 038122 38 GNVQARLRKLNEGVIQATLSALAGLK 63 (130)
Q Consensus 38 GNv~TRl~KL~~g~~daiiLA~AGL~ 63 (130)
.+.+.-++.|.+|++||++....-+.
T Consensus 192 ~~~~~~~~~l~~G~vDa~~~~~~~~~ 217 (291)
T 2yjp_A 192 DQNTETFDALKDGRGVALAHDNALLW 217 (291)
T ss_dssp SSHHHHHHHHHTTSSSEEEEEHHHHH
T ss_pred CCHHHHHHHHHcCCccEEEecHHHHH
Confidence 56778889999999999998655443
No 13
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=23.75 E-value=39 Score=23.47 Aligned_cols=64 Identities=5% Similarity=0.053 Sum_probs=34.8
Q ss_pred CcHHHHHHhhhcCCcceeehhHhhhhhcCCCCCceeecCCCCCccCcccchhhhhhccCcHHHHHHHh
Q 038122 38 GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLG 105 (130)
Q Consensus 38 GNv~TRl~KL~~g~~daiiLA~AGL~RLg~~~~i~~~l~~~~~~pA~gQGaiaie~r~~d~~~~~ll~ 105 (130)
.+...-++.|.+|++|+++.-...+..+-....-...+.+.. .....-+++-+++ ++.+.+.+.
T Consensus 153 ~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~k-~~~l~~~ln 216 (239)
T 3kbr_A 153 PDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQ---PFDFAEKAYLLPR-DEAFKRYVD 216 (239)
T ss_dssp CCTTTHHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECCCC----CCCCEEECCEECS-CHHHHHHHH
T ss_pred CCHHHHHHHHHcCCcCEEEEchHHHHHHHHhCCCcEEecCCC---CccccceEEEEcC-CHHHHHHHH
Confidence 566777889999999999986655443321111112222111 1123345666777 666554443
No 14
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=23.05 E-value=52 Score=22.77 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=20.3
Q ss_pred cHHHHHHhhhcCCcceeehhHhhhh
Q 038122 39 NVQARLRKLNEGVIQATLSALAGLK 63 (130)
Q Consensus 39 Nv~TRl~KL~~g~~daiiLA~AGL~ 63 (130)
+...-++.|.+|++|+++....-+.
T Consensus 150 ~~~~~~~~L~~g~vDa~~~~~~~~~ 174 (246)
T 4eq9_A 150 DFQQIMVRLSDGQFDYKIFDKIGVE 174 (246)
T ss_dssp CHHHHHHHHHTTSSSEEEEEHHHHH
T ss_pred CHHHHHHHHHcCCceEEEecHHHHH
Confidence 6778899999999999998655443
No 15
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=22.34 E-value=59 Score=21.84 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=14.0
Q ss_pred hHhhhcCCCcEEeecCC
Q 038122 2 EEALINGEIDIAVHSMK 18 (130)
Q Consensus 2 e~aLl~g~iDiAVHSlK 18 (130)
.+.|.+|++|+++-...
T Consensus 50 ~~~l~~g~~Di~i~~~~ 66 (222)
T 4ab5_A 50 VGLLLQHRADLAIVSEA 66 (222)
T ss_dssp HHHHHTTSCSEEEESCC
T ss_pred HHHHHcCCcCEEEecCC
Confidence 46899999999998643
No 16
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=21.60 E-value=39 Score=23.73 Aligned_cols=25 Identities=8% Similarity=0.003 Sum_probs=20.5
Q ss_pred CcHHHHHHhhhcCCcceeehhHhhh
Q 038122 38 GNVQARLRKLNEGVIQATLSALAGL 62 (130)
Q Consensus 38 GNv~TRl~KL~~g~~daiiLA~AGL 62 (130)
.+.+.-++.|.+|.+|+++.-..-+
T Consensus 143 ~~~~~~~~~L~~GrvDa~i~~~~~~ 167 (245)
T 3k4u_A 143 DTEAEAVQEVLNGKADMFIFDLPFN 167 (245)
T ss_dssp SSHHHHHHHHHSSSSEEEEEEHHHH
T ss_pred CCHHHHHHHHHcCCCcEEEEcHHHH
Confidence 5778889999999999999865443
No 17
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=21.41 E-value=77 Score=22.20 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=21.1
Q ss_pred CcHHHHHHhhhcCCcceeehhHhhhh
Q 038122 38 GNVQARLRKLNEGVIQATLSALAGLK 63 (130)
Q Consensus 38 GNv~TRl~KL~~g~~daiiLA~AGL~ 63 (130)
.+.+.-++.|.+|++|+++....-+.
T Consensus 178 ~~~~~~~~~l~~g~vDa~~~~~~~~~ 203 (269)
T 4i62_A 178 PKNGNLITDLKSGQVDAVIFEEPVAK 203 (269)
T ss_dssp SCHHHHHHHHHTTSSSEEEEEHHHHH
T ss_pred CCHHHHHHHHHcCCCCEEEeChHHHH
Confidence 67788899999999999997655443
No 18
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=20.83 E-value=34 Score=23.09 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=12.7
Q ss_pred HhhhcCCCcEEeecC
Q 038122 3 EALINGEIDIAVHSM 17 (130)
Q Consensus 3 ~aLl~g~iDiAVHSl 17 (130)
+.|.+|++|+|+-..
T Consensus 48 ~~l~~g~~Dl~i~~~ 62 (209)
T 2ql3_A 48 TQLEGGELDVAIVYD 62 (209)
T ss_dssp HHHHTTSCSEEEEES
T ss_pred HHHHcCCccEEEEec
Confidence 678999999998654
No 19
>2gvk_A Heme peroxidase; PC04261D, structural genomics, joint center for structural G JCSG, protein structure initiative, PSI; HET: MSE; 1.60A {Bacteroides thetaiotaomicron} SCOP: d.58.4.14
Probab=20.09 E-value=77 Score=25.22 Aligned_cols=58 Identities=7% Similarity=0.032 Sum_probs=39.2
Q ss_pred ehhHhhhhhcCCCCC-----ce--eecCCCCCccCcccchhhhhhccCcHHHHHHHhccCCHHHHHHHHHHHHHhHHcCC
Q 038122 56 LSALAGLKCLNMTEN-----VT--NILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDG 128 (130)
Q Consensus 56 iLA~AGL~RLg~~~~-----i~--~~l~~~~~~pA~gQGaiaie~r~~d~~~~~ll~~i~~~~t~~~~~aER~~l~~l~g 128 (130)
=+...+++||+ ... .. ..|+.+.+-|...||=|.|+++.++..+ +..+.|.+++.+.+
T Consensus 70 gfg~~~~~~lg-~~~~~P~~L~~fp~~~~~~~~~~~t~gDl~i~i~a~~~~~--------------~~~a~r~l~~~~~~ 134 (317)
T 2gvk_A 70 GFGADAWTRLF-PDKGKPKELSTFSEIKGEKYTAVSTPGDLLFHIRAKQMGL--------------CFEFASILDEKLKG 134 (317)
T ss_dssp EEEHHHHHHHC-TTSCCCTTCSCCCCEECSSCEECCCCCSEEEEEEESSHHH--------------HHHHHHHHHHHTTT
T ss_pred EECHHHHHHhc-CCCCChhhcccccccCCCccCCCCCCCcEEEEEEECCHHH--------------HHHHHHHHHHHcCC
Confidence 34678899998 322 11 1244455567788999999999988643 56667777777654
Done!