RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 038122
(130 letters)
>gnl|CDD|215373 PLN02691, PLN02691, porphobilinogen deaminase.
Length = 351
Score = 210 bits (537), Expect = 4e-69
Identities = 95/176 (53%), Positives = 108/176 (61%), Gaps = 47/176 (26%)
Query: 2 EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
++AL++G IDIAVHSMKDVPTYL + TILPCNL RE
Sbjct: 109 DDALLSGRIDIAVHSMKDVPTYLPEGTILPCNLPREDVRDAFISLKAKSLAELPAGSVVG 168
Query: 38 -----------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNI 74
GNVQ RLRKL EGV+ ATL ALAGLK L+MTE+ T+I
Sbjct: 169 TASLRRQSQILHKYPHLKVVNFRGNVQTRLRKLQEGVVDATLLALAGLKRLDMTEHATSI 228
Query: 75 LPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
L D+ML AVAQGAIGIAC ++D KM +YL SLNHEETR AV CERAFL LDGSC
Sbjct: 229 LSTDEMLPAVAQGAIGIACRTDDDKMLEYLASLNHEETRLAVACERAFLAALDGSC 284
>gnl|CDD|238276 cd00494, HMBS, Hydroxymethylbilane synthase (HMBS), also known as
porphobilinogen deaminase (PBGD), is an intermediate
enzyme in the biosynthetic pathway of tetrapyrrolic ring
systems, such as heme, chlorophylls, and vitamin B12.
HMBS catalyzes the conversion of porphobilinogen (PBG)
into hydroxymethylbilane (HMB). HMBS consists of three
domains, and is believed to bind substrate through a
hinge-bending motion of domains I and II. HMBS is found
in all organisms except viruses.
Length = 292
Score = 154 bits (392), Expect = 9e-48
Identities = 67/176 (38%), Positives = 85/176 (48%), Gaps = 47/176 (26%)
Query: 2 EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
EEAL+NGEID+AVHS+KDVPT L + +L +RE
Sbjct: 62 EEALLNGEIDLAVHSLKDVPTELPEGLVLGAIPKREDPRDALVSRNGSSLEDLPAGSVVG 121
Query: 38 -----------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNI 74
GNV RLRKL+EG A + A AGLK L + + +T
Sbjct: 122 TSSLRRQAQLKRKRPDLKFEPLRGNVDTRLRKLDEGEYDAIILAAAGLKRLGLEDRITQY 181
Query: 75 LPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
L + ML AV QGA+ I C D+++ L LNHEET V+ ERAFL L+G C
Sbjct: 182 LSPEVMLPAVGQGALAIECRKGDEELLALLKPLNHEETALCVLAERAFLRELEGGC 237
>gnl|CDD|234612 PRK00072, hemC, porphobilinogen deaminase; Reviewed.
Length = 295
Score = 152 bits (387), Expect = 7e-47
Identities = 68/176 (38%), Positives = 88/176 (50%), Gaps = 47/176 (26%)
Query: 2 EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
EEAL+ GEIDIAVHS+KDVPT L + +L +RE
Sbjct: 66 EEALLEGEIDIAVHSLKDVPTELPEGLVLAAIPEREDPRDALVSRDYKSLDDLPEGAVVG 125
Query: 38 -----------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNI 74
GNV RLRKL+EG A + A AGLK L + + +T
Sbjct: 126 TSSLRRQAQLLALRPDLEIKPLRGNVDTRLRKLDEGEYDAIILAAAGLKRLGLEDRITEY 185
Query: 75 LPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
L ++ML A QGA+GI C ++D+++ + L LNHEETR V ERAFL L+G C
Sbjct: 186 LDPEEMLPAPGQGALGIECRADDEEILELLAPLNHEETRLRVTAERAFLRALEGGC 241
>gnl|CDD|223259 COG0181, HemC, Porphobilinogen deaminase [Coenzyme metabolism].
Length = 307
Score = 129 bits (327), Expect = 7e-38
Identities = 65/176 (36%), Positives = 84/176 (47%), Gaps = 47/176 (26%)
Query: 2 EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
E+AL+ GEIDIAVHS+KDVPT L + +L +RE
Sbjct: 65 EQALLEGEIDIAVHSLKDVPTELPEGLVLAAIPEREDPRDALVSRDGYDLEELPEGAVVG 124
Query: 38 -----------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNI 74
GNV RLRKL+EG A + A AGLK L + +T I
Sbjct: 125 TSSLRRQAQLKALRPDLKIEPLRGNVDTRLRKLDEGEYDAIILAAAGLKRLGLENRITEI 184
Query: 75 LPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
L ++ L A QGA+ I C + D+K+ + L LN E+TR V ERAFL L+G C
Sbjct: 185 LDPEEFLPAPGQGALAIECRAGDEKVLELLAELNDEDTRICVTAERAFLRELEGGC 240
>gnl|CDD|232876 TIGR00212, hemC, porphobilinogen deaminase. Alternate name
hydroxymethylbilane synthase Biosynthesis of cofactors,
prosthetic groups, and carriers: Heme and porphyrin
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Heme, porphyrin, and cobalamin].
Length = 292
Score = 128 bits (324), Expect = 1e-37
Identities = 60/176 (34%), Positives = 82/176 (46%), Gaps = 47/176 (26%)
Query: 2 EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
E+AL++GEID+AVHS+KDVPT L + + L+RE
Sbjct: 62 EQALLDGEIDLAVHSLKDVPTVLPEGLEIAAVLKREDPRDVLVSRKYLSLDSLPQGAKVG 121
Query: 38 -----------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNI 74
GN+ RLRKL+EG A + A AGLK L + + +T +
Sbjct: 122 TSSLRRKAQLKAIRPDLKIEPLRGNIDTRLRKLDEGEYDAIILAEAGLKRLGLEDVITEV 181
Query: 75 LPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
L + ML A QGAI + C +D ++ + L +NH TR ERAFL L G C
Sbjct: 182 LDPEVMLPAPGQGAIAVECRKDDTEIKEILKEINHPPTRVEATAERAFLKELGGGC 237
>gnl|CDD|216465 pfam01379, Porphobil_deam, Porphobilinogen deaminase, dipyromethane
cofactor binding domain.
Length = 213
Score = 115 bits (289), Expect = 4e-33
Identities = 57/150 (38%), Positives = 69/150 (46%), Gaps = 47/150 (31%)
Query: 2 EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
EEAL+N EIDIAVHS+KDVPT L + +L +RE
Sbjct: 63 EEALLNNEIDIAVHSLKDVPTELPEGLVLGAIPKREDPRDALVSSNGKSLEDLPAGSVVG 122
Query: 38 -----------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNI 74
GNV RLRKL+EG A + A AGLK L + + +T
Sbjct: 123 TSSLRRSAQLKRKRPDLKFESLRGNVDTRLRKLDEGEYDAIILAAAGLKRLGLEDRITQS 182
Query: 75 LPIDDMLLAVAQGAIGIACTSNDKKMAKYL 104
L DDML AV QGA+GI C DK+M L
Sbjct: 183 LSPDDMLPAVGQGALGIECRKGDKEMLDLL 212
>gnl|CDD|225533 COG2986, HutH, Histidine ammonia-lyase [Amino acid transport and
metabolism].
Length = 498
Score = 31.1 bits (71), Expect = 0.13
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 53 QATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGA 88
+++ A K L + EN+ IL I+ LLA AQ
Sbjct: 415 HVSMATHAARKLLEIIENLRTILAIE--LLAAAQAV 448
>gnl|CDD|202802 pfam03900, Porphobil_deamC, Porphobilinogen deaminase, C-terminal
domain.
Length = 72
Score = 27.6 bits (62), Expect = 0.55
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 113 RQAVVCERAFLGTLDGSC 130
V+ ERAFL L+G C
Sbjct: 1 ALCVLAERAFLRELEGGC 18
>gnl|CDD|106974 PHA00665, PHA00665, major capsid protein.
Length = 329
Score = 28.7 bits (64), Expect = 0.74
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 7 NGEIDIAVHSMKDVPTYLLDKTILPCNLQ-------REGNVQARLRKLNEGV 51
NG+ID V + L D T++ NL R G RKLN GV
Sbjct: 21 NGKIDQIVEMLNQTNPILQDMTVIEGNLPTGHKTTVRSGLPTPTWRKLNYGV 72
>gnl|CDD|167150 PRK01066, PRK01066, porphobilinogen deaminase; Provisional.
Length = 231
Score = 28.2 bits (63), Expect = 1.3
Identities = 32/154 (20%), Positives = 51/154 (33%), Gaps = 52/154 (33%)
Query: 2 EEALINGEIDIAVHSMKDVPT------------------------YLLDKTILPCN---- 33
+ +++G+ D+A+HS KD+P YL LP
Sbjct: 79 DFLVLSGQCDLAIHSAKDLPEPPKLTVVAITAGLDPRDLLVYAEKYLSQP--LPRRPRIG 136
Query: 34 ---LQRE----------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNI 74
L+RE G ++ RL+ L E A + A A + L + T
Sbjct: 137 SSSLRREELLKLLFPSGIILDIRGTIEERLKLLEEKKYDAIVVAKAAVLRLGLRLPYTKE 196
Query: 75 LPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLN 108
LP L QG + I + + + L
Sbjct: 197 LPPPYHPL---QGRLAITASKHIRSWKGLFLPLG 227
>gnl|CDD|176148 cd08459, PBP2_DntR_NahR_LinR_like, The C-terminal substrate
binding domain of LysR-type transcriptional regulators
that are involved in the catabolism of dinitrotoluene,
naphthalene and gamma-hexachlorohexane; contains the
type 2 periplasmic binding fold. This CD includes
LysR-like bacterial transcriptional regulators, DntR,
NahR, and LinR, which are involved in the degradation
of aromatic compounds. The transcription of the genes
encoding enzymes involved in such degradation is
regulated and expression of these enzymes is enhanced
by inducers, which are either an intermediate in the
metabolic pathway or compounds to be degraded. DntR
from Burkholderia species controls genes encoding
enzymes for oxidative degradation of the nitro-aromatic
compound 2,4-dinitrotoluene. The active form of DntR is
homotetrameric, consisting of a dimer of dimers. NahR
is a salicylate-dependent transcription activator of
the nah and sal operons for naphthalene degradation.
Salicylic acid is an intermediate of the oxidative
degradation of the aromatic ring in soil bacteria.
LinR positively regulates expression of the genes (linD
and linE) encoding enzymes for
gamma-hexachlorocyclohexane (a haloorganic insecticide)
degradation. Expression of linD and linE are induced by
their substrates, 2,5-dichlorohydroquinone (2,5-DCHQ)
and chlorohydroquinone (CHQ). The structural topology
of this substrate-binding domain is most similar to
that of the type 2 periplasmic binding proteins (PBP2),
which are responsible for the uptake of a variety of
substrates such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis.
Length = 201
Score = 27.9 bits (63), Expect = 1.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 1 TEEALINGEIDIAVHSMKDVPT 22
EEAL +GEID+A+ + D+
Sbjct: 41 LEEALESGEIDLAIGYLPDLGA 62
>gnl|CDD|223787 COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport
systems, periplasmic components [Inorganic ion transport
and metabolism].
Length = 335
Score = 27.5 bits (61), Expect = 1.9
Identities = 25/122 (20%), Positives = 38/122 (31%), Gaps = 31/122 (25%)
Query: 1 TEEALINGEIDIAVHSMKDVPTYLL----DKTILPCNLQREGNVQARLRKLNEGV----- 51
EAL G +D AV+ D P + L + GN A L + G+
Sbjct: 74 VLEALAAGALDFAVYYTGDTPLIAAGAAGAPVKVVAALVQNGNGIALLVLKDSGIKSVAD 133
Query: 52 ------------------IQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIAC 93
++ L+ AGL + LP D + A+A G +
Sbjct: 134 LKGKKVGVPFGGSTSDFLLRYALAK-AGLD---PDDVELVNLPPADAVAALAAGQVDAFV 189
Query: 94 TS 95
Sbjct: 190 VW 191
>gnl|CDD|176104 cd08412, PBP2_PAO1_like, The C-terminal substrate-binding domain
of putative LysR-type transcriptional regulator
PAO1-like, a member of the type 2 periplasmic binding
fold protein superfamily. This family includes the
C-terminal substrate domain of a putative LysR-type
transcriptional regulator from the plant pathogen
Pseudomonas aeruginosa PAO1and its closely related
homologs. The LysR-type transcriptional regulators
(LTTRs) are composed of two functional domains joined
by a linker helix involved in oligomerization: an
N-terminal HTH (helix-turn-helix) domain, which is
responsible for the DNA-binding specificity, and a
C-terminal substrate-binding domain, which is
structurally homologous to the type 2 periplasmic
binding proteins. As also observed in the periplasmic
binding proteins, the C-terminal domain of the
bacterial transcriptional repressor undergoes a
conformational change upon substrate binding which in
turn changes the DNA binding affinity of the repressor.
The genes controlled by the LTTRs have diverse
functional roles including amino acid biosynthesis, CO2
fixation, antibiotic resistance, degradation of
aromatic compounds, nodule formation of N2 fixing
bacteria, and synthesis of virulence factors, to a name
a few. The structural topology of this
substrate-binding domain is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
substrate-binding domains from ionotropic glutamate
receptors, LysR-like transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 198
Score = 27.1 bits (61), Expect = 2.1
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 10/36 (27%)
Query: 2 EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE 37
EE L +GE+D+A+ TY LD LP ++ E
Sbjct: 42 EEGLRSGELDLAL-------TYDLD---LPEDIAFE 67
>gnl|CDD|236484 PRK09367, PRK09367, histidine ammonia-lyase; Provisional.
Length = 500
Score = 27.4 bits (62), Expect = 2.7
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 60 AGLKCLNMTENVTNILPIDDMLLAVAQG 87
A K M EN+ +L I+ LLA AQG
Sbjct: 422 AARKLREMAENLRRVLAIE--LLAAAQG 447
>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 336
Score = 26.7 bits (60), Expect = 3.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 80 MLLAVAQGAIGIACTSNDKKMAK 102
+ A A GA IA +S+D+K+ +
Sbjct: 177 LQFAKAAGARVIATSSSDEKLER 199
>gnl|CDD|215800 pfam00221, Lyase_aromatic, Aromatic amino acid lyase. This family
includes proteins with phenylalanine ammonia-lyase,
EC:4.3.1.24, histidine ammonia-lyase, EC:4.3.1.3, and
tyrosine aminomutase, EC:5.4.3.6, activities.
Length = 477
Score = 26.7 bits (60), Expect = 3.8
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 54 ATLSALAGLKCLNMTENVTNILPIDDMLLAVAQG 87
++ +A K L + EN+ IL I+ LLA AQ
Sbjct: 416 VSMGTIAARKLLEIVENLRLILAIE--LLAAAQA 447
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic
compound extrusion (MATE)-like proteins similar to
Bacillus subtilis yoeA. The integral membrane proteins
from the MATE family are involved in exporting
metabolites across the cell membrane and are responsible
for multidrug resistance (MDR) in many bacteria and
animals. A number of family members are involved in the
synthesis of peptidoglycan components in bacteria.
Length = 431
Score = 26.3 bits (59), Expect = 6.2
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 71 VTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAV 116
V+N PI +L A+ G + + T +++Y+G+ + E+ ++AV
Sbjct: 42 VSNGSPIIFLLTAIGMG-LSMGGTI---LISQYIGAKDEEKAKKAV 83
>gnl|CDD|222746 pfam14429, DOCK-C2, C2 domain in Dock180 and Zizimin proteins. The
Dock180/Dock1 and Zizimin proteins are atypical GTP/GDP
exchange factors for the small GTPases Rac and Cdc42 and
are implicated cell-migration and phagocytosis. Across
all Dock180 proteins, two regions are conserved:
C-terminus termed CZH2 or DHR2 (or the Dedicator of
cytokinesis) whereas CZH1/DHR1 contain a new family of
the C2 domain.
Length = 179
Score = 25.7 bits (57), Expect = 6.5
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 4 ALINGEIDIAVHSMKDVPTYL 24
+ +GE + V+S P YL
Sbjct: 124 TIQDGEHTLPVYSENLPPNYL 144
>gnl|CDD|241298 cd01268, PTB_Numb, Numb Phosphotyrosine-binding (PTB) domain. Numb
is a membrane associated adaptor protein which plays
critical roles in cell fate determination. Numb proteins
are involved in control of asymmetric cell division and
cell fate choice, endocytosis, cell adhesion, cell
migration, ubiquitination of specific substrates and a
number of signaling pathways (Notch, Hedgehog, p53).
Mutations in Numb plays a critical role in disease
(cancer). Numb has an N-terminal PTB domain and a
C-terminal NumbF domain. PTB domains have a common
PH-like fold and are found in various eukaryotic
signaling molecules. This domain was initially shown to
binds peptides with a NPXY motif with differing
requirements for phosphorylation of the tyrosine,
although more recent studies have found that some types
of PTB domains can bind to peptides lack tyrosine
residues altogether. In contrast to SH2 domains, which
recognize phosphotyrosine and adjacent carboxy-terminal
residues, PTB-domain binding specificity is conferred by
residues amino-terminal to the phosphotyrosine. PTB
domains are classified into three groups:
phosphotyrosine-dependent Shc-like,
phosphotyrosine-dependent IRS-like, and
phosphotyrosine-independent Dab-like PTB domains. This
cd is part of the Dab-like subgroup.
Length = 135
Score = 25.7 bits (57), Expect = 6.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 102 KYLGSLNHEETRQAVVCERAF 122
KYLG + E+R VCE A
Sbjct: 20 KYLGCVEVGESRGMQVCEEAL 40
>gnl|CDD|176460 cd00332, PAL-HAL, Phenylalanine ammonia-lyase (PAL) and histidine
ammonia-lyase (HAL). PAL and HAL are members of the
Lyase class I_like superfamily of enzymes that, catalyze
similar beta-elimination reactions and are active as
homotetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. PAL, present in plants and
fungi, catalyzes the conversion of L-phenylalanine to
E-cinnamic acid. HAL, found in several bacteria and
animals, catalyzes the conversion of L-histidine to
E-urocanic acid. Both PAL and HAL contain the cofactor
3, 5-dihydro-5-methylidene-4H-imidazol-4-one (MIO) which
is formed by autocatalytic excision/cyclization of the
internal tripeptide, Ala-Ser-Gly. PAL is being explored
as enzyme substitution therapy for Phenylketonuria
(PKU), a disorder which involves an inability to
metabolize phenylalanine. HAL failure in humans results
in the disease histidinemia.
Length = 444
Score = 25.9 bits (58), Expect = 7.6
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 54 ATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGA 88
++ +A K + +N+ IL I+ LLA AQ
Sbjct: 409 VSMGLIAARKLREIVDNLRRILAIE--LLAAAQAL 441
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.378
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,389,657
Number of extensions: 550136
Number of successful extensions: 511
Number of sequences better than 10.0: 1
Number of HSP's gapped: 510
Number of HSP's successfully gapped: 34
Length of query: 130
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 44
Effective length of database: 7,123,158
Effective search space: 313418952
Effective search space used: 313418952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)