RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 038122
         (130 letters)



>d1pdaa1 c.94.1.1 (A:3-219) Porphobilinogen deaminase
           (hydroxymethylbilane synthase), N-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 217

 Score = 65.8 bits (160), Expect = 7e-15
 Identities = 29/71 (40%), Positives = 40/71 (56%)

Query: 37  EGNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSN 96
            GNV  RL KL+ G   A + A+AGLK L +   +   LP +  L AV QGA+GI C  +
Sbjct: 147 RGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLD 206

Query: 97  DKKMAKYLGSL 107
           D +  + L +L
Sbjct: 207 DSRTRELLAAL 217


>d1pdaa2 d.50.2.1 (A:220-307) Porphobilinogen deaminase
           (hydroxymethylbilane synthase), C-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 88

 Score = 38.6 bits (90), Expect = 2e-05
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 108 NHEETRQAVVCERAFLGTLDGSC 130
           NH ET   V  ERA    L+G+C
Sbjct: 1   NHHETALRVTAERAMNTRLEGAC 23


>d1jb7b_ b.40.4.3 (B:) Core domain of telomere end binding protein
           beta subunit {Oxytricha nova [TaxId: 200597]}
          Length = 216

 Score = 24.7 bits (53), Expect = 4.5
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 7   NGEIDIAVHSMKDVPTYLLDKTILPCNLQREGNVQARLRKLNEGVIQATLS 57
           N E  + VHS K      L+ T  P NL R+   +  ++      +QA ++
Sbjct: 103 NLEARLIVHSFKPNLQERLNPTRYPVNLFRDDEFKTTIQHFRHTALQAAIN 153


>d1nbwa1 c.8.6.1 (A:92-256) Swiveling domain of the glycerol
           dehydratase reactivase alpha subunit {Klebsiella
           pneumoniae [TaxId: 573]}
          Length = 165

 Score = 24.3 bits (53), Expect = 4.7
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 79  DMLLAVAQGAIG--IACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGT 125
            ++ AV   A G  +   SN   +A + G L+ EET+  V   RA +G 
Sbjct: 105 GVMAAVEVAAPGQVVRILSNPYGIATFFG-LSPEETQAIVPIARALIGN 152


>d1ddma_ b.55.1.2 (A:) Numb {Fruit fly (Drosophila melanogaster)
           [TaxId: 7227]}
          Length = 135

 Score = 23.4 bits (50), Expect = 7.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 101 AKYLGSLNHEETRQAVVCERA 121
            KYLG +   E+R   VCE A
Sbjct: 19  VKYLGCVEVFESRGMQVCEEA 39


>d2d0oa1 c.8.6.1 (A:93-254) Diol dehydratase-reactivating factor
           large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}
          Length = 162

 Score = 23.5 bits (51), Expect = 8.5
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 79  DMLLAV---AQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGT 125
            ML A+     G + I   SN   +A     L+ EET+  V   RA +G 
Sbjct: 102 GMLAAIEVAVPGKV-IETLSNPYGIATVFN-LSPEETKNIVPMARALIGN 149


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0695    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 431,877
Number of extensions: 16913
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 10
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.3 bits)