BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038123
(508 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 92/379 (24%), Positives = 141/379 (37%), Gaps = 79/379 (20%)
Query: 129 ELKISKKEFIEQARESGNFNDASLEFKQRIIKNSGLGDETY---LPRAVFCPGYRPNLKD 185
E I+ +E +E AR + + L R+I+N+G+ + + PG+ K
Sbjct: 21 EHVITMEETLELARRR-HTDHPQLPLALRLIENTGVRTRHIVQPIEDTLEHPGFEDRNKV 79
Query: 186 GREEAAMVLFGAIDDLLAATKIRPKDIRVLV-VNCGVLNTTPSLSAMVINHYKLRHNINS 244
EA + I L ++ DI V++ V+C PSL+A +IN
Sbjct: 80 YEREAKSRVPAVIQRALDDAELLATDIDVIIYVSCTGF-MMPSLTAWLINEMGFDSTTRQ 138
Query: 245 FNLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNTWYGGN-EVDMLLPNCFFRM 303
+ +GC+AG AI+ A D AYP + AL+V+ E S + + V LL N F
Sbjct: 139 IPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFCSLCYQPTDLGVGSLLCNGLFGD 198
Query: 304 GAAAVLLSSCRLDKWRSKYEFKQLVRTHKGMDNRSFKCMHLKEDAEGRQGLSVSKDMIEV 363
G AA ++ GR G V
Sbjct: 199 GIAAAVV--------------------------------------RGRGGTGVR------ 214
Query: 364 GGHALKANITTLGPLVLPVSEQ----------VHFFTNXXXXXXTKPYIPDYKQ-AFEH- 411
L+ N G ++P +E HF + +P P K+ A EH
Sbjct: 215 ----LERN----GSYLIPKTEDWIMYDVKATGFHFLLDKRVPATMEPLAPALKELAGEHG 266
Query: 412 --------ICILATSKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWYELAYLEA 463
+ A ++LD++ LE+ SR TL +GN +S+ V L L
Sbjct: 267 WDASDLDFYIVHAGGPRILDDLSTFLEVDPHAFRFSRATLTEYGNIASAVVLDALRRLFD 326
Query: 464 NAGVKRGDRIWQTAFGSGV 482
GV+ G R FG G+
Sbjct: 327 EGGVEEGARGLLAGFGPGI 345
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 119/278 (42%), Gaps = 37/278 (13%)
Query: 226 PSLSAMVINHYKLRHNINSFNLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNT 285
P ++ L ++ + L G +AG + LAKDL GS L+V +E+ +
Sbjct: 143 PGADYQLVKLLGLSPSVKRYMLYQQGXAAGGTVLRLAKDLAENNKGSRVLIVCSEITAIL 202
Query: 286 WYGGNE--VDMLLPNCFFRMGAAAVLLSSC-RLDKWRSKYEFKQLVRTHKGMDNRSFKCM 342
++G NE +D L+ F GAAA+++ S L R +E +T ++ K +
Sbjct: 203 FHGPNENHLDSLVAQALFGDGAAALIVGSGPHLAVERPIFEIVSTDQTILPDTEKAMK-L 261
Query: 343 HLKEDAEGRQGLSVSKDMIEVGGHALKANITTLGPLVLPVSEQVHFFTNXXXXXXTKPYI 402
HL+ EG + +D+ PL+ V++ + N + I
Sbjct: 262 HLR---EGGLTFQLHRDV----------------PLM--VAKNIE---NAAEKALSPLGI 297
Query: 403 PDYKQAFEHICILATSKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWY------ 456
D+ F + + +LD++++ L L E+ + ASR L +GN S+ V +
Sbjct: 298 TDWNSVF--WMVHPGGRAILDQVERKLNLKEDKLRASRHVLSEYGNLISACVLFIIDEVR 355
Query: 457 ELAYLEANAGVKRG-DRIWQTAFGSGVKCNSVVWKALR 493
+ + E + G D FG G+ +VV +++R
Sbjct: 356 KRSMAEGKSTTGEGLDCGVLFGFGPGMTVETVVLRSVR 393
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 123/301 (40%), Gaps = 48/301 (15%)
Query: 208 RPKDIRVLVVNCGVLNTTPSLSAMVINHYKL---RHNINSFNLGGMGCSAGIIAIDLAKD 264
+PK ++ C TTP L KL R + + GC AG + LAKD
Sbjct: 123 QPKSKITHLIVCS--TTTPDLPGADYQLTKLLGLRPYVKRVGVFQHGCFAGGTVLRLAKD 180
Query: 265 LLNAYPGSYALVVSTEVVSNTWYGGNE--VDMLLPNCFFRMGAAAVLLSSCRLDKWRSKY 322
L G+ LVV +EV + T+ G ++ +D L+ F GAAA+++ S
Sbjct: 181 LAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGS---------- 230
Query: 323 EFKQLVRTHKGMDNRSFKCMHLKEDAEGRQGLSVSKDMIEVGGHALKANITTLGPLVLP- 381
+ K + + + D+EG + GH +A +T +P
Sbjct: 231 --DPVPEIEKPIFEMVWTAQTIAPDSEG-----------AIDGHLREAGLTFHLKGAVPD 277
Query: 382 -VSEQVHFFTNXXXXXXTKPYIPDYKQAF--EHICILATSKKVLDEIQKNLELTEELMEA 438
VS+ + T I DY F H +LD++++ L L E M A
Sbjct: 278 IVSKNI---TKALVEAFEPLGISDYNSIFWIAH----PGGPAILDQVEQKLALKPEKMNA 330
Query: 439 SRKTLERFGNTSSSSVWY---ELAYLEANAGVK-RGDRI-WQT--AFGSGVKCNSVVWKA 491
+R+ L +GN SS+ V + E+ G+K G+ + W FG G+ +VV ++
Sbjct: 331 TREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRS 390
Query: 492 L 492
+
Sbjct: 391 V 391
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 113/268 (42%), Gaps = 43/268 (16%)
Query: 238 LRHNINSFNLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNTWYGGNE--VDML 295
LR + + + GC AG + LAKDL G+ LVV +EV + T+ G ++ +D L
Sbjct: 150 LRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSL 209
Query: 296 LPNCFFRMGAAAVLLSSCRLDKWRSKYEFKQLVRTHKGMDNRSFKCMHLKEDAEGRQGLS 355
+ F GAAA+++ S + K + + + D+EG
Sbjct: 210 VGQALFGDGAAALIVGS------------DPVPEIEKPIFEMVWTAQTIAPDSEG----- 252
Query: 356 VSKDMIEVGGHALKANIT--TLGPLVLPVSEQVHFFTNXXXXXXTKPYIPDYKQAF--EH 411
+ GH +A +T L + VS+ + T I DY F H
Sbjct: 253 ------AIDGHLREAGLTFHLLKDVPGIVSKNI---TKALVEAFEPLGISDYNSIFWIAH 303
Query: 412 ICILATSKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWY---ELAYLEANAGVK 468
+LD++++ L L E M A+R+ L +GN SS+ V + E+ G+K
Sbjct: 304 ----PGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLK 359
Query: 469 -RGDRI-WQT--AFGSGVKCNSVVWKAL 492
G+ + W FG G+ +VV +++
Sbjct: 360 TTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWJ|B Chain B, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWK|A Chain A, Crystal Structure Of The Polyketide Synthase 1 From
Huperzia Serrata
Length = 402
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 98/239 (41%), Gaps = 46/239 (19%)
Query: 238 LRHNINSFNLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNTWYGGNE--VDML 295
LR + L G AG + +AKDL G+ LV +EV + T+ +E +D L
Sbjct: 163 LRPTVKRVMLYQQGXYAGATVLRVAKDLAENNKGARVLVACSEVTAVTFRAPSETHLDGL 222
Query: 296 LPNCFFRMGAAAVLLSSCRLDK-----WRSKYEFKQLVRTHKGMDNRSFK----CMHLKE 346
+ + F GAAA+++ S + + + + + ++ G N + HL +
Sbjct: 223 VGSALFGDGAAALIVGSDPVPQEEKPLFEIHWAGEAVLPDSDGAINGHLREAGLIFHLLK 282
Query: 347 DAEGRQGLSVSKDMIEVGGHALKANITTLGPLVLPVSEQVHFFTNXXXXXXTKPYIPDYK 406
D G ++ K + E PL E VHF P Y
Sbjct: 283 DVPGLISKNIDKVLAE--------------PL-----EYVHF--------------PSYN 309
Query: 407 QAFEHICILATSKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWYELAYLEANA 465
F + +LD+I+ L L+ + M+ASR L +GN SS+SV + L + N+
Sbjct: 310 DMF--WAVHPGGPAILDQIEAKLGLSTDKMQASRDVLASYGNMSSASVLFVLDQIRKNS 366
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 119/279 (42%), Gaps = 41/279 (14%)
Query: 226 PSLSAMVINHYKLRHNINSFNLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNT 285
P + +I L ++ + + GC AG + LAKDL + L+V +E S T
Sbjct: 139 PGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTSVT 198
Query: 286 WYGGNEVDM--LLPNCFFRMGAAAVLLSSCRLDKWRSKYEFKQLVRTHKGMDNRSFKCMH 343
+ G +E DM L+ F GAAA+++ S + + + ++V T +
Sbjct: 199 FRGPSETDMDSLVGQALFADGAAAIIIGSDPVPEVENP--LFEIVSTDQ----------Q 246
Query: 344 LKEDAEGRQGLSVSKDMIEVGGHALKANITTLGPLVLPVSEQVHFFTNXXXXXXTKPY-I 402
L ++ G +GG + +T L V + + N P I
Sbjct: 247 LVPNSHG-----------AIGGLLREVGLTFY--LNKSVPDIISQNINDALSKAFDPLGI 293
Query: 403 PDYKQAF--EHICILATSKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWYELAY 460
DY F H + +LD++++ + L E M+A+R L +GN SS+ V++ +
Sbjct: 294 SDYNSIFWIAH----PGGRAILDQVEEKVNLKPEKMKATRDVLSNYGNMSSACVFFIMDL 349
Query: 461 LEAN---AGVK-RGDRI-WQT--AFGSGVKCNSVVWKAL 492
+ AG+K G+ + W FG G+ +VV +++
Sbjct: 350 MRKKSLEAGLKTTGEGLDWGVLFGFGPGLTIETVVLRSM 388
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 112/268 (41%), Gaps = 43/268 (16%)
Query: 238 LRHNINSFNLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNTWYGGNE--VDML 295
LR + + + G AG + LAKDL G+ LVV +EV + T+ G ++ +D L
Sbjct: 150 LRPYVKRYMMYQQGAFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSL 209
Query: 296 LPNCFFRMGAAAVLLSSCRLDKWRSKYEFKQLVRTHKGMDNRSFKCMHLKEDAEGRQGLS 355
+ F GAAA+++ S + K + + + D+EG
Sbjct: 210 VGQALFGDGAAALIVGS------------DPVPEIEKPIFEMVWTAQTIAPDSEG----- 252
Query: 356 VSKDMIEVGGHALKANIT--TLGPLVLPVSEQVHFFTNXXXXXXTKPYIPDYKQAF--EH 411
+ GH +A +T L + VS+ + T I DY F H
Sbjct: 253 ------AIDGHLREAGLTFHLLKDVPGIVSKNI---TKALVEAFEPLGISDYNSIFWIAH 303
Query: 412 ICILATSKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWY---ELAYLEANAGVK 468
+LD++++ L L E M A+R+ L +GN SS+ V + E+ G+K
Sbjct: 304 ----PGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLK 359
Query: 469 -RGDRI-WQT--AFGSGVKCNSVVWKAL 492
G+ + W FG G+ +VV +++
Sbjct: 360 TTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 112/268 (41%), Gaps = 43/268 (16%)
Query: 238 LRHNINSFNLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNTWYGGNE--VDML 295
LR + + + G AG + LAKDL G+ LVV +EV + T+ G ++ +D L
Sbjct: 150 LRPYVKRYMMYQQGSFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSL 209
Query: 296 LPNCFFRMGAAAVLLSSCRLDKWRSKYEFKQLVRTHKGMDNRSFKCMHLKEDAEGRQGLS 355
+ F GAAA+++ S + K + + + D+EG
Sbjct: 210 VGQALFGDGAAALIVGS------------DPVPEIEKPIFEMVWTAQTIAPDSEG----- 252
Query: 356 VSKDMIEVGGHALKANIT--TLGPLVLPVSEQVHFFTNXXXXXXTKPYIPDYKQAF--EH 411
+ GH +A +T L + VS+ + T I DY F H
Sbjct: 253 ------AIDGHLREAGLTFHLLKDVPGIVSKNI---TKALVEAFEPLGISDYNSIFWIAH 303
Query: 412 ICILATSKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWY---ELAYLEANAGVK 468
+LD++++ L L E M A+R+ L +GN SS+ V + E+ G+K
Sbjct: 304 ----PGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLK 359
Query: 469 -RGDRI-WQT--AFGSGVKCNSVVWKAL 492
G+ + W FG G+ +VV +++
Sbjct: 360 TTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 111/266 (41%), Gaps = 39/266 (14%)
Query: 238 LRHNINSFNLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNTWYGGNE--VDML 295
LR + + + G AG + LAKDL G+ LVV +EV + T+ G ++ +D L
Sbjct: 149 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSL 208
Query: 296 LPNCFFRMGAAAVLLSSCRLDKWRSKYEFKQLVRTHKGMDNRSFKCMHLKEDAEGRQGLS 355
+ F GAAA+++ S + K + + + D+EG
Sbjct: 209 VGQALFGDGAAALIVGS------------DPVPEIEKPIFEMVWTAQTIAPDSEG----- 251
Query: 356 VSKDMIEVGGHALKANIT--TLGPLVLPVSEQVHFFTNXXXXXXTKPYIPDYKQAFEHIC 413
+ GH +A +T L + VS+ + T I DY F
Sbjct: 252 ------AIDGHLREAGLTFHLLKDVPGIVSKNI---TKALVEAFEPLGISDYNSIF--WI 300
Query: 414 ILATSKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWY---ELAYLEANAGVK-R 469
+LD++++ L L E M A+R+ L +GN SS+ V + E+ G+K
Sbjct: 301 AQPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTT 360
Query: 470 GDRI-WQT--AFGSGVKCNSVVWKAL 492
G+ + W FG G+ +VV +++
Sbjct: 361 GEGLEWGVLFGFGPGLTIETVVLRSV 386
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 112/268 (41%), Gaps = 43/268 (16%)
Query: 238 LRHNINSFNLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNTWYGGNE--VDML 295
LR + + + G AG + LAKDL G+ LVV +EV + T+ G ++ +D L
Sbjct: 149 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSL 208
Query: 296 LPNCFFRMGAAAVLLSSCRLDKWRSKYEFKQLVRTHKGMDNRSFKCMHLKEDAEGRQGLS 355
+ F GAAA+++ S + K + + + D+EG
Sbjct: 209 VGQALFGDGAAALIVGS------------DPVPEIEKPIFEMVWTAQTIAPDSEG----- 251
Query: 356 VSKDMIEVGGHALKANIT--TLGPLVLPVSEQVHFFTNXXXXXXTKPYIPDYKQAF--EH 411
+ GH +A +T L + VS+ + T I DY F H
Sbjct: 252 ------AIDGHLREAGLTFHLLKDVPGIVSKNI---TKALVEAFEPLGISDYNSIFWIAH 302
Query: 412 ICILATSKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWY---ELAYLEANAGVK 468
+LD++++ L L E M A+R+ L +GN SS+ V + E+ G+K
Sbjct: 303 ----PGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLK 358
Query: 469 -RGDRI-WQT--AFGSGVKCNSVVWKAL 492
G+ + W FG G+ +VV +++
Sbjct: 359 TTGEGLEWGVLFGFGPGLTIETVVLRSV 386
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 111/267 (41%), Gaps = 41/267 (15%)
Query: 238 LRHNINSFNLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNTWYGGNE--VDML 295
LR + + + G AG + LAKDL G+ LVV +EV + T+ G ++ +D L
Sbjct: 150 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSL 209
Query: 296 LPNCFFRMGAAAVLLSSCRLDKWRSKYEFKQLVRTHKGMDNRSFKCMHLKEDAEGRQGLS 355
+ F GAAA+++ S + K + + + D+EG
Sbjct: 210 VGQALFGDGAAALIVGS------------DPVPEIEKPIFEMVWTAQTIAPDSEG----- 252
Query: 356 VSKDMIEVGGHALKANITTLGPLVLPVSEQVHFFTNXXXXXXTKPY-IPDYKQAF--EHI 412
+ GH +A +T L+ V V +P I DY F H
Sbjct: 253 ------AIDGHLREAGLTF--HLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIAH- 303
Query: 413 CILATSKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWY---ELAYLEANAGVK- 468
+LD++++ L L E M A+R+ L +GN SS+ V + E+ G+K
Sbjct: 304 ---PGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKT 360
Query: 469 RGDRI-WQT--AFGSGVKCNSVVWKAL 492
G+ + W FG G+ +VV +++
Sbjct: 361 TGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 117/271 (43%), Gaps = 49/271 (18%)
Query: 238 LRHNINSFNLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNTWYGGNE--VDML 295
LR + + + G AG + LAKDL G+ LVV +EV + T+ G ++ +D L
Sbjct: 150 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSL 209
Query: 296 LPNCFFRMGAAAVLLSSCRLDKWRSKYEFKQLVRTHKGM--DNRSFKCMHLKEDAEGRQG 353
+ F GAAA+++ S + + ++V T + + D+ +HL+E G
Sbjct: 210 VGQALFGDGAAALIVGSDPVPEIEKP--IFEMVWTAQTIAPDSEGAIDLHLRE-----AG 262
Query: 354 LSVS--KDMIE-VGGHALKANITTLGPLVLPVSEQVHFFTNXXXXXXTKPYIPDYKQAF- 409
L+ KD+ V + KA + PL I DY F
Sbjct: 263 LTFHLLKDVPGIVSKNITKALVEAFEPL----------------------GISDYNSIFW 300
Query: 410 -EHICILATSKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWY---ELAYLEANA 465
H +LD++++ L L E M A+R+ L +GN SS+ V + E+
Sbjct: 301 IAH----PGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQN 356
Query: 466 GVK-RGDRI-WQT--AFGSGVKCNSVVWKAL 492
G+K G+ + W FG G+ +VV +++
Sbjct: 357 GLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/298 (20%), Positives = 121/298 (40%), Gaps = 42/298 (14%)
Query: 208 RPKD-IRVLVVNCGVLNTTPSLSAMVINHYKLRHNINSFNLGGMGCSAGIIAIDLAKDLL 266
+PK I L+V C P + L ++ F +GC AG + LAKD+
Sbjct: 115 QPKSKITHLIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIA 174
Query: 267 NAYPGSYALVVSTEVVSNTWYGGNE--VDMLLPNCFFRMGAAAVLL-SSCRLDKWRSKYE 323
G+ L+V +E+ + + G +E +D ++ F GAAAV++ + L R +E
Sbjct: 175 ENNKGARVLIVCSEMTTTCFRGPSETHLDSMIGQALFGDGAAAVIVGADPDLTVERPIFE 234
Query: 324 FKQLVRTHKGMDNRSFKCMHLKEDAEGRQGLSVSKDMIEVGGHALKANITTLGPLVLPVS 383
+T V + + GH L++ ++ +P
Sbjct: 235 LVSTAQT------------------------IVPESHGAIEGHLLESGLSFHLYKTVPT- 269
Query: 384 EQVHFFTNXXXXXXTKPYIPDYKQAFEHICILA--TSKKVLDEIQKNLELTEELMEASRK 441
+N + + P + + +A +LD++ + L +E ++ +R+
Sbjct: 270 ----LISNNIKTCLSDAFTPLNISDWNSLFWIAHPGGPAILDQVTAKVGLEKEKLKVTRQ 325
Query: 442 TLERFGNTSSSSVWYELAYLEA----NAGVKRGDRI-WQT--AFGSGVKCNSVVWKAL 492
L+ +GN SS++V++ + + N G+ + W FG G+ +VV +++
Sbjct: 326 VLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGLEWGVLFGFGPGITVETVVLRSV 383
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 117/271 (43%), Gaps = 49/271 (18%)
Query: 238 LRHNINSFNLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNTWYGGNE--VDML 295
LR + + + G AG + LAKDL G+ LVV +EV + T+ G ++ +D L
Sbjct: 150 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSL 209
Query: 296 LPNCFFRMGAAAVLLSSCRLDKWRSKYEFKQLVRTHKGM--DNRSFKCMHLKEDAEGRQG 353
+ F GAAA+++ S + + ++V T + + D+ +HL+E G
Sbjct: 210 VGQALFGDGAAALIVGSDPVPEIEKP--IFEMVWTAQTIAPDSEGAIDVHLRE-----AG 262
Query: 354 LSVS--KDMIE-VGGHALKANITTLGPLVLPVSEQVHFFTNXXXXXXTKPYIPDYKQAF- 409
L+ KD+ V + KA + PL I DY F
Sbjct: 263 LTFHLLKDVPGIVSKNITKALVEAFEPL----------------------GISDYNSIFW 300
Query: 410 -EHICILATSKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWY---ELAYLEANA 465
H +LD++++ L L E M A+R+ L +GN SS+ V + E+
Sbjct: 301 IAH----PGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQN 356
Query: 466 GVK-RGDRI-WQT--AFGSGVKCNSVVWKAL 492
G+K G+ + W FG G+ +VV +++
Sbjct: 357 GLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 113/275 (41%), Gaps = 57/275 (20%)
Query: 238 LRHNINSFNLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNTWYGGNE--VDML 295
LR + + + G AG + LAKDL G+ LVV +EV + T+ G ++ +D L
Sbjct: 150 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSL 209
Query: 296 LPNCFFRMGAAAVLLSSCRLDK-----WRSKYEFKQLVRTHKGMDNRSFK----CMHLKE 346
+ F GAAA+++ S + + + + + + +G + + HL +
Sbjct: 210 VGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDAHLREAGLTFHLLK 269
Query: 347 DAEGRQGLSVSKDMIEVGGHALKANITTLGPLVLPVSEQVHFFTNXXXXXXTKPYIPDYK 406
D G +++K ++E LG I DY
Sbjct: 270 DVPGIVSKNITKALVEA--------FEPLG-------------------------ISDYN 296
Query: 407 QAF--EHICILATSKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWY---ELAYL 461
F H +LD++++ L L E M A+R+ L +GN SS+ V + E+
Sbjct: 297 SIFWIAH----PGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKK 352
Query: 462 EANAGVK-RGDRI-WQT--AFGSGVKCNSVVWKAL 492
G+K G+ + W FG G+ +VV +++
Sbjct: 353 STQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f)
pdb|1I8B|B Chain B, Chalcone Synthase (g256f)
Length = 389
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 116/271 (42%), Gaps = 49/271 (18%)
Query: 238 LRHNINSFNLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNTWYGGNE--VDML 295
LR + + + G AG + LAKDL G+ LVV +EV + T+ G ++ +D L
Sbjct: 150 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSL 209
Query: 296 LPNCFFRMGAAAVLLSSCRLDKWRSKYEFKQLVRTHKGM--DNRSFKCMHLKEDAEGRQG 353
+ F GAAA+++ S + + ++V T + + D+ HL+E G
Sbjct: 210 VGQALFGDGAAALIVGSDPVPEIEKP--IFEMVWTAQTIAPDSEGAIDFHLRE-----AG 262
Query: 354 LSVS--KDMIE-VGGHALKANITTLGPLVLPVSEQVHFFTNXXXXXXTKPYIPDYKQAF- 409
L+ KD+ V + KA + PL I DY F
Sbjct: 263 LTFHLLKDVPGIVSKNITKALVEAFEPL----------------------GISDYNSIFW 300
Query: 410 -EHICILATSKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWY---ELAYLEANA 465
H +LD++++ L L E M A+R+ L +GN SS+ V + E+
Sbjct: 301 IAH----PGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQN 356
Query: 466 GVK-RGDRI-WQT--AFGSGVKCNSVVWKAL 492
G+K G+ + W FG G+ +VV +++
Sbjct: 357 GLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa)
Length = 387
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 110/267 (41%), Gaps = 41/267 (15%)
Query: 238 LRHNINSFNLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNTWYGGNE--VDML 295
LR + + + G AG + LAKDL G+ LVV +EV + T+ G ++ +D L
Sbjct: 148 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSL 207
Query: 296 LPNCFFRMGAAAVLLSSCRLDKWRSKYEFKQLVRTHKGMDNRSFKCMHLKEDAEGRQGLS 355
+ F GAAA+++ S + K + + + D+EG
Sbjct: 208 VGQALFGDGAAALIVGS------------DPVPEIEKPIFEMVWTAQTIAPDSEG----- 250
Query: 356 VSKDMIEVGGHALKANITTLGPLVLPVSEQVHFFTNXXXXXXTKPY-IPDYKQAF--EHI 412
+ GH +A +T L+ V V +P I DY F H
Sbjct: 251 ------AIDGHLREAGLTF--HLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIAH- 301
Query: 413 CILATSKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWY---ELAYLEANAGVK- 468
+LD++++ L L E M A+R+ L +G SS+ V + E+ G+K
Sbjct: 302 ---PGGPAILDQVEQKLALKPEKMNATREVLSEYGAMSSACVLFILDEMRKKSTQNGLKT 358
Query: 469 RGDRI-WQT--AFGSGVKCNSVVWKAL 492
G+ + W FG G+ +VV +++
Sbjct: 359 TGEGLEWGVLFGFGPGLTIETVVLRSV 385
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 111/268 (41%), Gaps = 43/268 (16%)
Query: 238 LRHNINSFNLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNTWYGGNE--VDML 295
LR + + + G AG + LAKDL G+ LVV +EV + T+ G ++ +D L
Sbjct: 150 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSL 209
Query: 296 LPNCFFRMGAAAVLLSSCRLDKWRSKYEFKQLVRTHKGMDNRSFKCMHLKEDAEGRQGLS 355
+ GAAA+++ S + K + + + D+EG
Sbjct: 210 VGQALSGDGAAALIVGS------------DPVPEIEKPIFEMVWTAQTIAPDSEG----- 252
Query: 356 VSKDMIEVGGHALKANIT--TLGPLVLPVSEQVHFFTNXXXXXXTKPYIPDYKQAF--EH 411
+ GH +A +T L + VS+ + T I DY F H
Sbjct: 253 ------AIDGHLREAGLTFHLLKDVPGIVSKNI---TKALVEAFEPLGISDYNSIFWIAH 303
Query: 412 ICILATSKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWY---ELAYLEANAGVK 468
+LD++++ L L E M A+R+ L +GN SS+ V + E+ G+K
Sbjct: 304 ----PGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLK 359
Query: 469 -RGDRI-WQT--AFGSGVKCNSVVWKAL 492
G+ + W FG G+ +VV +++
Sbjct: 360 TTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/298 (20%), Positives = 120/298 (40%), Gaps = 42/298 (14%)
Query: 208 RPKD-IRVLVVNCGVLNTTPSLSAMVINHYKLRHNINSFNLGGMGCSAGIIAIDLAKDLL 266
+PK I L+V C P + L ++ F +GC AG + LAKD+
Sbjct: 115 QPKSKITHLIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIA 174
Query: 267 NAYPGSYALVVSTEVVSNTWYGGNE--VDMLLPNCFFRMGAAAVLL-SSCRLDKWRSKYE 323
G+ L+V +E+ + + G +E +D ++ GAAAV++ + L R +E
Sbjct: 175 ENNKGARVLIVCSEMTTTCFRGPSETHLDSMIGQAILGDGAAAVIVGADPDLTVERPIFE 234
Query: 324 FKQLVRTHKGMDNRSFKCMHLKEDAEGRQGLSVSKDMIEVGGHALKANITTLGPLVLPVS 383
+T V + + GH L++ ++ +P
Sbjct: 235 LVSTAQT------------------------IVPESHGAIEGHLLESGLSFHLYKTVPT- 269
Query: 384 EQVHFFTNXXXXXXTKPYIPDYKQAFEHICILA--TSKKVLDEIQKNLELTEELMEASRK 441
+N + + P + + +A +LD++ + L +E ++ +R+
Sbjct: 270 ----LISNNIKTCLSDAFTPLNISDWNSLFWIAHPGGPAILDQVTAKVGLEKEKLKVTRQ 325
Query: 442 TLERFGNTSSSSVWYELAYLEA----NAGVKRGDRI-WQT--AFGSGVKCNSVVWKAL 492
L+ +GN SS++V++ + + N G+ + W FG G+ +VV +++
Sbjct: 326 VLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGLEWGVLFGFGPGITVETVVLRSV 383
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/297 (21%), Positives = 121/297 (40%), Gaps = 34/297 (11%)
Query: 202 LAATKIRPKDIRVLVVNCGVLNTTPSLSAMVINHYKLRHNINSFNLGGMGCSAGIIAIDL 261
LA R +I +LV+ P + ++ L +I+ + MGC+A + A+
Sbjct: 125 LAGLPYRAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGT 184
Query: 262 AKDLLNAYPGSYALVVSTEVVSNTWYGGNEVDMLLPNCFFRMGAAAVLLSSCRLDKWRSK 321
A + + A+P ALVV E+ S ++++ ++ + F G AA+++ + ++ + K
Sbjct: 185 ATNYVRAHPAMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQE---K 241
Query: 322 YE-FKQLVRTHKGMDNRSFKCMHLKEDAEGRQGLSVSKDMIEVGGHALKANITTLGPLVL 380
E K +VR+ SF Q L ++D I +G +
Sbjct: 242 LEPGKVVVRS-------SFS-----------QLLDNTEDGIVLG--------VNHNGITC 275
Query: 381 PVSEQVHFFTNXXXXXXTKPYIPDYKQAFEHICILAT---SKKVLDEIQKNLELTEELME 437
+SE + + + D I + A K++++ ++L ++ EL
Sbjct: 276 ELSENLPGYIFSGVAPVVTEMLWDNGLQISDIDLWAIHPGGPKIIEQSVRSLGISAELAA 335
Query: 438 ASRKTLERFGNTSSSSVWYELAYLEANAGVKRGDRIWQT-AFGSGVKCNSVVWKALR 493
S L RFGN S S+ + L + A + AFG GV +++ +R
Sbjct: 336 QSWDVLARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIR 392
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 112/275 (40%), Gaps = 42/275 (15%)
Query: 238 LRHNINSFNLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNTWYGGNE--VDML 295
LR N+ + G AG + +AKDL G+ L + +EV + T+ +E +D L
Sbjct: 168 LRPNVRRVMMYQQGXFAGATVLRVAKDLAENNAGARVLAICSEVTAVTFRAPSETHIDGL 227
Query: 296 LPNCFFRMGAAAVLL-SSCRLDKWRSKYEFKQLVRTHKGMDNRSFKCMHLKEDAEGRQGL 354
+ + F GAAAV++ S R R YE MH G L
Sbjct: 228 VGSALFGDGAAAVIVGSDPRPGIERPIYE------------------MHWA----GEMVL 265
Query: 355 SVSKDMIEVGGHALKANIT--TLGPLVLPVSEQVHFFTNXXXXXXTKPYIPDYKQAFEHI 412
S I+ GH +A + L + +++ + F TK +
Sbjct: 266 PESDGAID--GHLTEAGLVFHLLKDVPGLITKNIGGFLKD-----TKNLVGASSWNELFW 318
Query: 413 CILATSKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWYEL-----AYLEANAGV 467
+ +LD+++ LEL + +ASR L +GN SS+SV + L LE+N
Sbjct: 319 AVHPGGPAILDQVEAKLELEKGKFQASRDILSDYGNMSSASVLFVLDRVRERSLESNKST 378
Query: 468 KRGDRIWQ--TAFGSGVKCNSVVWKALRNVEKPER 500
W FG G+ +++ +AL +++ ER
Sbjct: 379 FGEGSEWGFLIGFGPGLTVETLLLRAL-PLQQAER 412
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 114/288 (39%), Gaps = 53/288 (18%)
Query: 226 PSLSAMVINHYKLRHNINSFNLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNT 285
P + N L ++ L GC AG + AKDL G+ LVV +E+ T
Sbjct: 725 PGADYKLANLLGLEPSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSEITVVT 784
Query: 286 WYGGNE--VDMLLPNCFFRMGAAAVLLSSCRLDKWRSKYEFKQLVRTHKGMDNRSFKCMH 343
+ G +E +D L+ F G+AAV++ S ++ F+ +
Sbjct: 785 FRGPSEDALDSLVGQALFGDGSAAVIVGS----------------DPDISIERPLFQLVS 828
Query: 344 LKEDAEGRQGLSVSKDMIEVG-GHALKANITTLGPLVLPVSEQVHFFTNXXXXXXTKPYI 402
+ +++ ++ EVG L N+ TL +SE V T+ +
Sbjct: 829 AAQTFIPNSAGAIAGNLREVGLTFHLWPNVPTL------ISENVE-------KCLTQAFD 875
Query: 403 P----DYKQAF--EHICILATSKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWY 456
P D+ F H +LD ++ L L ++ +EA+R L +GN SS+ V +
Sbjct: 876 PLGISDWNSLFWIAH----PGGPAILDAVEAKLNLDKKKLEATRHVLSEYGNMSSACVLF 931
Query: 457 ELAYLEANAGVKRGDRI-------WQT--AFGSGVKCNSVVWKALRNV 495
L + + +G+R W FG G+ +VV ++ V
Sbjct: 932 ILDEMRKKS--LKGERATTGEGLDWGVLFGFGPGLTIETVVLHSIPMV 977
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 12/160 (7%)
Query: 202 LAATKIRPKDIRVLVVNCGVLNTTPSLSAMVINHYKLRHNINSFNLGGMGCSAGIIAIDL 261
LA R +I +LV+ P + ++ L +I+ + MGC+A + A+
Sbjct: 125 LAGLPYRAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGT 184
Query: 262 AKDLLNAYPGSYALVVSTEVVSNTWYGGNEVDMLLPNCFFRMGAAAVLLSSCRLD----- 316
A + + A+P ALVV E+ S ++++ ++ + F G AA+++ + ++
Sbjct: 185 ATNYVRAHPAMKALVVCIELFSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEP 244
Query: 317 -KWRSKYEFKQLVRTHK-----GMDNRSFKCMHLKEDAEG 350
K + F QL+ + G+++ C L E+ G
Sbjct: 245 GKVVVRSSFSQLLDNTEDGIVLGVNHNGITC-ELSENLPG 283
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 208 RPK-DIRVLVVNCGVLNTTPSLSAMVINHYKLRHNINSFNLGGMGCSAGIIAIDLAKDLL 266
RP DI LVV P + ++ LR ++ L GC AG A+ LAKDL
Sbjct: 143 RPAADITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLA 202
Query: 267 NAYPGSYALVVSTEVVSNTWYGGNE--VDMLLPNCFFRMGAAAVLLSSCRLDKWRSKYEF 324
G+ LVV+ E+ + G +E LL F GAAAV++ + D R +E
Sbjct: 203 ENSRGARVLVVAAELTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLFEI 262
Query: 325 KQLVRT 330
+T
Sbjct: 263 VSAAQT 268
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 418 SKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWYELAYL-----EANAGVKRGDR 472
S ++D++ L L + ASR+ L +GN S ++V + L L EA A + +
Sbjct: 333 SSTIMDQVDAALGLEPGKLAASRRVLSDYGNMSGATVIFALDELRRQRKEAAAAGEWPEL 392
Query: 473 IWQTAFGSGVKCNSVVWKALRNV 495
AFG G+ ++++ A +V
Sbjct: 393 GVMMAFGPGMTVDAMLLHATSHV 415
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 208 RPK-DIRVLVVNCGVLNTTPSLSAMVINHYKLRHNINSFNLGGMGCSAGIIAIDLAKDLL 266
RP DI LVV P + ++ LR ++ L GC AG A+ LAKDL
Sbjct: 113 RPAADITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLA 172
Query: 267 NAYPGSYALVVSTEVVSNTWYGGNE--VDMLLPNCFFRMGAAAVLLSSCRLDKWRSKYEF 324
G+ LVV+ E+ + G +E LL F GAAAV++ + D R +E
Sbjct: 173 ENSRGARVLVVAAELTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLFEI 232
Query: 325 KQLVRT 330
+T
Sbjct: 233 VSAAQT 238
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 418 SKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWYELAYL-----EANAGVKRGDR 472
S ++D++ L L + ASR+ L +GN S ++V + L L EA A + +
Sbjct: 303 SSTIMDQVDAALGLEPGKLAASRRVLSDYGNMSGATVIFALDELRRQRKEAAAAGEWPEL 362
Query: 473 IWQTAFGSGVKCNSVVWKA 491
AFG G+ ++++ A
Sbjct: 363 GVMMAFGPGMTVDAMLLHA 381
>pdb|3OV2|A Chain A, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|B Chain B, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|C Chain C, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|D Chain D, Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/297 (19%), Positives = 115/297 (38%), Gaps = 40/297 (13%)
Query: 208 RPKDIRVLVVNCGVLNT-TPSLSAMVINHYKLRHNINSFNLGGMGCSAGIIAIDLAKDLL 266
RPK +V C + P + L +N + C G + +AKDL
Sbjct: 119 RPKSEITHLVFCSISGIDMPGADYRLATLLGLPLTVNRLMIYSQACHMGAAMLRIAKDLA 178
Query: 267 NAYPGSYALVVSTEVVSNTWYGGNEVDM--LLPNCFFRMGAAAVLLSSCRLDKWRSKYEF 324
G+ LVV+ E+ ++ G NE D L F GA AV++ + L+
Sbjct: 179 ENNRGARVLVVACEITVLSFRGPNEGDFEALAGQAGFGDGAGAVVVGADPLE-------- 230
Query: 325 KQLVRTHKGMDNRSFKCMHLKEDAEGRQGLSVSKDMIEVGGHALKANITTLGPLVLPVSE 384
G++ ++ ++ +V++ VGGH + G +++
Sbjct: 231 --------GIEKPIYEIAAAMQE-------TVAESQGAVGGH-----LRAFGWTFYFLNQ 270
Query: 385 QVHFFTNXXXXXXTKPYIPDYKQAFEHICILATSKK--VLDEIQKNLELTEELMEASRKT 442
+ + P + + + +A ++D I+ L+L+ + + +R
Sbjct: 271 LPAIIADNLGRSLERALAPLGVREWNDVFWVAHPGNWAIIDAIEAKLQLSPDKLSTARHV 330
Query: 443 LERFGNTSSSSVWYELAYLEANAGVK----RGDRI-WQT--AFGSGVKCNSVVWKAL 492
+GN S++V++ + L + V+ GD + W FG G+ +VV +++
Sbjct: 331 FTEYGNMQSATVYFVMDELRKRSAVEGRSTTGDGLQWGVLLGFGPGLSIETVVLRSM 387
>pdb|2H84|A Chain A, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
pdb|2H84|B Chain B, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
Length = 374
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 214 VLVVNCGVLNTTPSLSAMVINHYKLRHNINSFNLGGMGCSAGIIAIDLAKDLLNAYPGSY 273
V V + G++ P ++ +I+ L ++ +L MGC AG+ ++ A L A P +
Sbjct: 121 VSVTSTGII--IPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNR 178
Query: 274 ALVVSTEVVSNTWYGGNEVDMLLPNCFFRMGAAAVLL 310
LVV TEV S + + D ++ + F G+AA ++
Sbjct: 179 ILVVCTEVCSLHFSNTDGGDQMVASSIFADGSAAYII 215
>pdb|3OV3|A Chain A, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|B Chain B, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|C Chain C, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|D Chain D, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/297 (19%), Positives = 115/297 (38%), Gaps = 40/297 (13%)
Query: 208 RPKDIRVLVVNCGVLNT-TPSLSAMVINHYKLRHNINSFNLGGMGCSAGIIAIDLAKDLL 266
RPK +V C + P + L +N + C G + +AKDL
Sbjct: 119 RPKSEITHLVFCSISGIDMPGADYRLATLLGLPLTVNRLMIYSQACHMGAAMLRIAKDLA 178
Query: 267 NAYPGSYALVVSTEVVSNTWYGGNEVDM--LLPNCFFRMGAAAVLLSSCRLDKWRSKYEF 324
G+ LVV+ E+ ++ G NE D L F GA AV++ + L+
Sbjct: 179 ENNRGARVLVVACEITVLSFRGPNEGDFEALAFQAGFGDGAGAVVVGADPLE-------- 230
Query: 325 KQLVRTHKGMDNRSFKCMHLKEDAEGRQGLSVSKDMIEVGGHALKANITTLGPLVLPVSE 384
G++ ++ ++ +V++ VGGH + G +++
Sbjct: 231 --------GIEKPIYEIAAAMQE-------TVAESQGAVGGH-----LRAFGWTFYFLNQ 270
Query: 385 QVHFFTNXXXXXXTKPYIPDYKQAFEHICILATSKK--VLDEIQKNLELTEELMEASRKT 442
+ + P + + + +A ++D I+ L+L+ + + +R
Sbjct: 271 LPAIIADNLGRSLERALAPLGVREWNDVFWVAHPGNWAIIDAIEAKLQLSPDKLSTARHV 330
Query: 443 LERFGNTSSSSVWYELAYLEANAGVK----RGDRI-WQT--AFGSGVKCNSVVWKAL 492
+GN S++V++ + L + V+ GD + W FG G+ +VV +++
Sbjct: 331 FTEYGNMQSATVYFVMDELRKRSAVEGRSTTGDGLQWGVLLGFGPGLSIETVVLRSM 387
>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
Length = 413
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 113/284 (39%), Gaps = 42/284 (14%)
Query: 223 NTTPSLSAM---VINHYKLRHNINSFNLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVST 279
TTP L V L ++ + GC AG + +AKDL G+ LV+ +
Sbjct: 155 TTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICS 214
Query: 280 EVVSNTWYGGNE--VDMLLPNCFFRMGAAAVLLSSCRLDKWRSKYEFKQLVRTHKGMDNR 337
E + T+ G +E +D L+ F GA+A+++ + + + K
Sbjct: 215 ETTAVTFRGPSETHLDSLVGQALFGDGASALIVGA------------DPIPQVEKACFEI 262
Query: 338 SFKCMHLKEDAEGRQGLSVSKDMIEVG-GHALKANITTLGPLVLPVSEQVHFFTNXXXXX 396
+ + ++EG G V EVG LK + L +S + N
Sbjct: 263 VWTAQTVVPNSEGAIGGKVR----EVGLTFQLKGAVPDL------ISANIE---NCMVEA 309
Query: 397 XTKPYIPDYKQAFEHICILATSKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWY 456
++ I D+ + F + + +LD ++ L L + +R + +GN SS+ V +
Sbjct: 310 FSQFKISDWNKLF--WVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHF 367
Query: 457 EL-----AYLEANAGVKRGDRIWQT---AFGSGVKCNSVVWKAL 492
L A L+ N G+ + FG G+ +VV K++
Sbjct: 368 ILDQTRKASLQ-NGCSTTGEGLEMGVLFGFGPGLTIETVVLKSV 410
>pdb|3S3L|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae
pdb|3S3L|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae
pdb|3T5Y|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae -
Malonic Acid Covalently Linked To The Catalytic Cystein
C116
pdb|3T6S|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae In
Complex With Coa
Length = 357
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 115/274 (41%), Gaps = 36/274 (13%)
Query: 229 SAMVINHYKLRHNINSFNLGGMGCSAGIIAIDLAKDLLNAY--PGSYALVVSTEVVS--- 283
+A + H + ++ +F L C+ G+ AI+LA L + G AL+ + + +
Sbjct: 94 AASYVAHEAVGRHVPAFGLA-QRCNGGMGAIELAGAYLGSGIGAGHAALLTTGDRFAGPR 152
Query: 284 -NTWYGGNEVDMLLPNCFFRMGAAAVLLSSCRLDKWRSKYEFKQLVRTHKGMDNRSFKCM 342
+ W N VD+ + + GAAA++LS+ + F +++ T G+DN S + +
Sbjct: 153 IDRW---NSVDVTM----YGDGAAALVLST--------RDGFARVLSTATGVDN-SLEIL 196
Query: 343 HLKEDAEGRQGLSVSKDMIEVGGHALKANITTLGPLVLPVSEQVHFFTNXXXXXXTKPYI 402
A G + + +E A T G + + + H + + T+ +
Sbjct: 197 -----ARGDE--PFAPHPVEPSPVADLGTRTVRGAELADLPDLTHRYIDLLVAAKTQ-AL 248
Query: 403 PDYKQAFE---HICILATSKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWYELA 459
D A E H I + + E+ L L +E S G+ + + LA
Sbjct: 249 EDAGTAIEDIAHAVIPVSRRGTGHELHDLLGLPDE--RTSWAYGRTTGHVGAGDQYAGLA 306
Query: 460 YLEANAGVKRGDRIWQTAFGSGVKCNSVVWKALR 493
+L NA V+ GDR+ G+G C + V + LR
Sbjct: 307 HLVENALVQPGDRVLLFGGGAGYTCTAAVVEILR 340
>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
Length = 397
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 113/284 (39%), Gaps = 42/284 (14%)
Query: 223 NTTPSLSAM---VINHYKLRHNINSFNLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVST 279
TTP L V L ++ + GC AG + +AKDL G+ LV+ +
Sbjct: 139 TTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICS 198
Query: 280 EVVSNTWYGGNE--VDMLLPNCFFRMGAAAVLLSSCRLDKWRSKYEFKQLVRTHKGMDNR 337
E + T+ G +E +D L+ F GA+A+++ + + + K
Sbjct: 199 ETTAVTFRGPSETHLDSLVGQALFGDGASALIVGA------------DPIPQVEKACFEI 246
Query: 338 SFKCMHLKEDAEGRQGLSVSKDMIEVG-GHALKANITTLGPLVLPVSEQVHFFTNXXXXX 396
+ + ++EG G V EVG LK + L +S + N
Sbjct: 247 VWTAQTVVPNSEGAIGGKVR----EVGLTFQLKGAVPDL------ISANIE---NCMVEA 293
Query: 397 XTKPYIPDYKQAFEHICILATSKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWY 456
++ I D+ + F + + +LD ++ L L + +R + +GN SS+ V +
Sbjct: 294 FSQFKISDWNKLF--WVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHF 351
Query: 457 EL-----AYLEANAGVKRGDRIWQT---AFGSGVKCNSVVWKAL 492
L A L+ N G+ + FG G+ +VV K++
Sbjct: 352 ILDQTRKASLQ-NGCSTTGEGLEMGVLFGFGPGLTIETVVLKSV 394
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 109/290 (37%), Gaps = 38/290 (13%)
Query: 214 VLVVNCGVLNTTPSLSAMVINHYKLRHNINSFNLGGMGCSAGIIAIDLAKDLLNAYPGSY 273
V +CGV PS L N+N + + G AG + AKDL G+
Sbjct: 141 VFCTSCGV--DMPSADFQCAKLLGLHANVNKYCIYMQGXYAGGTVMRYAKDLAENNRGAR 198
Query: 274 ALVVSTEVVSNTWYGGNE--VDMLLPNCFFRMGAAAVLLSSCRLDKWRSKYEFKQLVRTH 331
LVV E+ NE +D + F GAAA+++ S +
Sbjct: 199 VLVVCAELTIMMLRAPNETHLDNAIGISLFGDGAAALIIGSDPI---------------- 242
Query: 332 KGMDNRSFKCMHLKEDAEGRQGLSVSKDMIEVGGHALKANITTLGPLVLPVSEQVHFFTN 391
G++ F+ + K+ + + E G + ++ P+ + + +
Sbjct: 243 IGVEKPMFEIVCTKQTVIPNTEDVIHLHLRETG---MMFYLSKGSPMTISNNVEACLIDV 299
Query: 392 XXXXXXTKPYIPDYKQAF--EHICILATSKKVLDEIQKNLELTEELMEASRKTLERFGNT 449
T P D+ F H + +LD+++ L+L E A+R L +GN
Sbjct: 300 FKSVGITPP--EDWNSLFWIPH----PGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNM 353
Query: 450 SSSSVWYELAYLEANAGVK----RGDRI-WQT--AFGSGVKCNSVVWKAL 492
S+SV Y L + + K G+ + W FG G+ +++ +L
Sbjct: 354 VSASVGYILDEMRRKSAAKGLETYGEGLEWGVLLGFGPGITVETILLHSL 403
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 109/290 (37%), Gaps = 38/290 (13%)
Query: 214 VLVVNCGVLNTTPSLSAMVINHYKLRHNINSFNLGGMGCSAGIIAIDLAKDLLNAYPGSY 273
V +CGV PS L N+N + + G AG + AKDL G+
Sbjct: 141 VFCTSCGV--DMPSADFQCAKLLGLHANVNKYCIYMQGXYAGGTVMRYAKDLAENNRGAR 198
Query: 274 ALVVSTEVVSNTWYGGNE--VDMLLPNCFFRMGAAAVLLSSCRLDKWRSKYEFKQLVRTH 331
LVV E+ NE +D + F GAAA+++ S +
Sbjct: 199 VLVVCAELTIMGLRAPNETHLDNAIGISLFGDGAAALIIGSDPI---------------- 242
Query: 332 KGMDNRSFKCMHLKEDAEGRQGLSVSKDMIEVGGHALKANITTLGPLVLPVSEQVHFFTN 391
G++ F+ + K+ + + E G + ++ P+ + + +
Sbjct: 243 IGVEKPMFEIVCTKQTVIPNTEDVIHLHLRETG---MMFYLSKGSPMTISNNVEACLIDV 299
Query: 392 XXXXXXTKPYIPDYKQAF--EHICILATSKKVLDEIQKNLELTEELMEASRKTLERFGNT 449
T P D+ F H + +LD+++ L+L E A+R L +GN
Sbjct: 300 FKSVGITPP--EDWNSLFWIPH----PGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNM 353
Query: 450 SSSSVWYELAYLEANAGVK----RGDRI-WQT--AFGSGVKCNSVVWKAL 492
S+SV Y L + + K G+ + W FG G+ +++ +L
Sbjct: 354 VSASVGYILDEMRRKSAAKGLETYGEGLEWGVLLGFGPGITVETILLHSL 403
>pdb|3H78|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Pqsd C112a
Mutant In Complex With Anthranilic Acid
pdb|3H78|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Pqsd C112a
Mutant In Complex With Anthranilic Acid
Length = 359
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 409 FEHICILATSKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWYELAYLEANAGVK 468
+H+ + ++LD +Q+ L + + T++R GN +S+S LA + ++
Sbjct: 274 IDHVICHQPNLRILDAVQEQLGIPQHKFAV---TVDRLGNMASASTPVTLAMFWPD--IQ 328
Query: 469 RGDRIWQTAFGSGVKCNSVVWKALRNVEKP 498
G R+ +GSG + +++ V +P
Sbjct: 329 PGQRVLVLTYGSGATWGAALYRKPEEVNRP 358
>pdb|3H76|A Chain A, Crystal Structure Of Pqsd, A Key Enzyme In Pseudomonas
Aeruginosa Quinolone Signal Biosynthesis Pathway
pdb|3H76|B Chain B, Crystal Structure Of Pqsd, A Key Enzyme In Pseudomonas
Aeruginosa Quinolone Signal Biosynthesis Pathway
Length = 359
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 409 FEHICILATSKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWYELAYLEANAGVK 468
+H+ + ++LD +Q+ L + + T++R GN +S+S LA + ++
Sbjct: 274 IDHVICHQPNLRILDAVQEQLGIPQHKFAV---TVDRLGNMASASTPVTLAMFWPD--IQ 328
Query: 469 RGDRIWQTAFGSGVKCNSVVWKALRNVEKP 498
G R+ +GSG + +++ V +P
Sbjct: 329 PGQRVLVLTYGSGATWGAALYRKPEEVNRP 358
>pdb|3H77|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Pqsd In A
Covalent Complex With Anthranilate
pdb|3H77|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Pqsd In A
Covalent Complex With Anthranilate
Length = 359
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 409 FEHICILATSKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWYELAYLEANAGVK 468
+H+ + ++LD +Q+ L + + T++R GN +S+S LA + ++
Sbjct: 274 IDHVICHQPNLRILDAVQEQLGIPQHKFAV---TVDRLGNMASASTPVTLAMFWPD--IQ 328
Query: 469 RGDRIWQTAFGSGVKCNSVVWKALRNVEKP 498
G R+ +GSG + +++ V +P
Sbjct: 329 PGQRVLVLTYGSGATWGAALYRKPEEVNRP 358
>pdb|3T5Y|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae -
Malonic Acid Covalently Linked To The Catalytic Cystein
C116
pdb|3T6S|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae In
Complex With Coa
pdb|3T8E|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae Soaked
With Cervik
pdb|3T8E|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae Soaked
With Cervik
Length = 357
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 115/279 (41%), Gaps = 46/279 (16%)
Query: 229 SAMVINHYKLRHNINSFNL-----GGMGCSAGIIAIDLAKDLLNAY--PGSYALVVSTEV 281
+A + H + ++ +F L GGMG AI+LA L + G AL+ + +
Sbjct: 94 AASYVAHEAVGRHVPAFGLAQRXNGGMG------AIELAGAYLGSGIGAGHAALLTTGDR 147
Query: 282 VS----NTWYGGNEVDMLLPNCFFRMGAAAVLLSSCRLDKWRSKYEFKQLVRTHKGMDNR 337
+ + W N VD+ + + GAAA++LS+ + F +++ T G+DN
Sbjct: 148 FAGPRIDRW---NSVDVTM----YGDGAAALVLST--------RDGFARVLSTATGVDN- 191
Query: 338 SFKCMHLKEDAEGRQGLSVSKDMIEVGGHALKANITTLGPLVLPVSEQVHFFTNXXXXXX 397
S + + A G + + +E A T G + + + H + +
Sbjct: 192 SLEIL-----ARGDE--PFAPHPVEPSPVADLGTRTVRGAELADLPDLTHRYIDLLVAAK 244
Query: 398 TKPYIPDYKQAFE---HICILATSKKVLDEIQKNLELTEELMEASRKTLERFGNTSSSSV 454
T+ + D A E H I + + E+ L L +E S G+ +
Sbjct: 245 TQ-ALEDAGTAIEDIAHAVIPVSRRGTGHELHDLLGLPDE--RTSWAYGRTTGHVGAGDQ 301
Query: 455 WYELAYLEANAGVKRGDRIWQTAFGSGVKCNSVVWKALR 493
+ LA+L NA V+ GDR+ G+G C + V + LR
Sbjct: 302 YAGLAHLVENALVQPGDRVLLFGGGAGYTCTAAVVEILR 340
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
pdb|2EBD|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
Length = 309
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 443 LERFGNTSSSSVWYELAYLEANAGVKRGDRIWQTAFGSGVKCNSVVWK 490
++++GNTS++S+ L VKRGD I TA G G+ +V+ +
Sbjct: 261 IQKYGNTSAASIPIALHEAIKEGKVKRGDLILMTAMGGGLTWGAVLLR 308
>pdb|3GWA|A Chain A, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWA|B Chain B, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
Length = 365
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 421 VLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWYELAYLEANAGVKRGDRIWQTAFGS 480
+LD ++K +++ E +E GNT SS++ L + AN + RG R+ FG
Sbjct: 298 MLDALRKKMKIPEHKFPV---LMEHCGNTVSSTLPLALETMRANGTLARGMRLMLLGFGV 354
Query: 481 G 481
G
Sbjct: 355 G 355
>pdb|1M1M|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
pdb|1M1M|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
Length = 355
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 119/303 (39%), Gaps = 44/303 (14%)
Query: 188 EEAAMVLFGAIDDLLAATKIRPKDIRVLVV--NCGVLNTTPSLSAMVINHYKLRHNINSF 245
E AA + A L+ + DI ++V N L T P+ + MV + I F
Sbjct: 79 ESAASMATEACRRALSNAGLSAADIDGVIVTTNTHFLQTPPA-APMVAASLGAK-GILGF 136
Query: 246 NLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNTWYGGNEVDML-LPNCF-FRM 303
+L GC+ A+ A D++ + LVV TE +S T +DM NCF F
Sbjct: 137 DLS-AGCAGFGYALGAAADMIRGGGAATMLVVGTEKLSPT------IDMYDRGNCFIFAD 189
Query: 304 GAAAVLLSSCRLDKWRSKYEFKQLVRTHKGMDNRSFKCMHLKEDAEGRQGLSVSKDMIEV 363
GAAAV++ + F+ + T G D G Q ++ +D+ +
Sbjct: 190 GAAAVVVG---------ETPFQGIGPTVAGSD--------------GEQADAIRQDIDWI 226
Query: 364 GGHALKANITTLGPLVLPVSEQVHFFTNXXXXXXTKPYIPDYKQAFEHICILA---TSKK 420
N + P V V + + + + I + + +
Sbjct: 227 ---TFAQNPSGPRPFVRLEGPAVFRWAAFKMGDVGRRAMDAAGVRPDQIDVFVPHQANSR 283
Query: 421 VLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWYELAYLEANAGVKRGDRIWQTAFGS 480
+ + + KNL+L + + A+ +E GNTS++S+ +A L K GD +G+
Sbjct: 284 INELLVKNLQLRPDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGA 341
Query: 481 GVK 483
G+
Sbjct: 342 GLS 344
>pdb|2AHB|A Chain A, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
pdb|2AHB|B Chain B, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
Length = 356
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 119/303 (39%), Gaps = 44/303 (14%)
Query: 188 EEAAMVLFGAIDDLLAATKIRPKDIRVLVV--NCGVLNTTPSLSAMVINHYKLRHNINSF 245
E AA + A L+ + DI ++V N L T P+ + MV + I F
Sbjct: 80 ESAASMATEACRRALSNAGLSAADIDGVIVTTNTHFLQTPPA-APMVAASLGAK-GILGF 137
Query: 246 NLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNTWYGGNEVDML-LPNCF-FRM 303
+L GC+ A+ A D++ + LVV TE +S T +DM NCF F
Sbjct: 138 DLS-AGCAGFGYALGAAADMIRGGGAATMLVVGTEKLSPT------IDMYDAGNCFIFAD 190
Query: 304 GAAAVLLSSCRLDKWRSKYEFKQLVRTHKGMDNRSFKCMHLKEDAEGRQGLSVSKDMIEV 363
GAAAV++ + F+ + T G D G Q ++ +D+ +
Sbjct: 191 GAAAVVVG---------ETPFQGIGPTVAGSD--------------GEQADAIRQDIDWI 227
Query: 364 GGHALKANITTLGPLVLPVSEQVHFFTNXXXXXXTKPYIPDYKQAFEHICILA---TSKK 420
N + P V V + + + + I + + +
Sbjct: 228 ---TFAQNPSGPRPFVRLEGPAVFRWAAFKMGDVGRRAMDAAGVRPDQIDVFVPHQANSR 284
Query: 421 VLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWYELAYLEANAGVKRGDRIWQTAFGS 480
+ + + KNL+L + + A+ +E GNTS++S+ +A L K GD +G+
Sbjct: 285 INELLVKNLQLRPDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGA 342
Query: 481 GVK 483
G+
Sbjct: 343 GLS 345
>pdb|2AJ9|A Chain A, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
pdb|2AJ9|B Chain B, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
Length = 356
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 119/303 (39%), Gaps = 44/303 (14%)
Query: 188 EEAAMVLFGAIDDLLAATKIRPKDIRVLVV--NCGVLNTTPSLSAMVINHYKLRHNINSF 245
E AA + A L+ + DI ++V N L T P+ + MV + I F
Sbjct: 80 ESAASMATEACRRALSNAGLSAADIDGVIVTTNTHFLQTPPA-APMVAASLGAK-GILGF 137
Query: 246 NLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNTWYGGNEVDML-LPNCF-FRM 303
+L GC+ A+ A D++ + LVV TE +S T +DM NCF F
Sbjct: 138 DLS-AGCAGFGYALGAAADMIRGGGAATMLVVGTEKLSPT------IDMYDAGNCFIFAD 190
Query: 304 GAAAVLLSSCRLDKWRSKYEFKQLVRTHKGMDNRSFKCMHLKEDAEGRQGLSVSKDMIEV 363
GAAAV++ + F+ + T G D G Q ++ +D+ +
Sbjct: 191 GAAAVVVG---------ETPFQGIGPTVAGSD--------------GEQADAIRQDIDWI 227
Query: 364 GGHALKANITTLGPLVLPVSEQVHFFTNXXXXXXTKPYIPDYKQAFEHICILA---TSKK 420
N + P V V + + + + I + + +
Sbjct: 228 ---TFAQNPSGPRPFVRLEGPAVFRWAAFKMGDVGRRAMDAAGVRPDQIDVFVPHQANSR 284
Query: 421 VLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWYELAYLEANAGVKRGDRIWQTAFGS 480
+ + + KNL+L + + A+ +E GNTS++S+ +A L K GD +G+
Sbjct: 285 INELLVKNLQLRPDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGA 342
Query: 481 GVK 483
G+
Sbjct: 343 GLS 345
>pdb|1HZP|A Chain A, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|1HZP|B Chain B, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|2QX1|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QX1|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QNX|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNX|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNZ|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QNZ|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QO1|A Chain A, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh.
pdb|2QO1|B Chain B, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh
Length = 335
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 119/303 (39%), Gaps = 44/303 (14%)
Query: 188 EEAAMVLFGAIDDLLAATKIRPKDIRVLVV--NCGVLNTTPSLSAMVINHYKLRHNINSF 245
E AA + A L+ + DI ++V N L T P+ + MV + I F
Sbjct: 59 ESAASMATEACRRALSNAGLSAADIDGVIVTTNTHFLQTPPA-APMVAASLGAK-GILGF 116
Query: 246 NLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNTWYGGNEVDML-LPNCF-FRM 303
+L GC+ A+ A D++ + LVV TE +S T +DM NCF F
Sbjct: 117 DLSA-GCAGFGYALGAAADMIRGGGAATMLVVGTEKLSPT------IDMYDRGNCFIFAD 169
Query: 304 GAAAVLLSSCRLDKWRSKYEFKQLVRTHKGMDNRSFKCMHLKEDAEGRQGLSVSKDMIEV 363
GAAAV++ + F+ + T G D G Q ++ +D+ +
Sbjct: 170 GAAAVVVG---------ETPFQGIGPTVAGSD--------------GEQADAIRQDIDWI 206
Query: 364 GGHALKANITTLGPLVLPVSEQVHFFTNXXXXXXTKPYIPDYKQAFEHICILA---TSKK 420
N + P V V + + + + I + + +
Sbjct: 207 ---TFAQNPSGPRPFVRLEGPAVFRWAAFKMGDVGRRAMDAAGVRPDQIDVFVPHQANSR 263
Query: 421 VLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWYELAYLEANAGVKRGDRIWQTAFGS 480
+ + + KNL+L + + A+ +E GNTS++S+ +A L K GD +G+
Sbjct: 264 INELLVKNLQLRPDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGA 321
Query: 481 GVK 483
G+
Sbjct: 322 GLS 324
>pdb|2QNY|A Chain A, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And Ss-(2-Hydroxyethyl) O-Decyl
Ester Carbono(Dithioperoxoic) Acid
pdb|2QNY|B Chain B, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And Ss-(2-Hydroxyethyl) O-Decyl
Ester Carbono(Dithioperoxoic) Acid
pdb|2QO0|A Chain A, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And 11-(Decyldithiocarbonyloxy)-
Undecanoic Acid
pdb|2QO0|B Chain B, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And 11-(Decyldithiocarbonyloxy)-
Undecanoic Acid
Length = 335
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 119/303 (39%), Gaps = 44/303 (14%)
Query: 188 EEAAMVLFGAIDDLLAATKIRPKDIRVLVV--NCGVLNTTPSLSAMVINHYKLRHNINSF 245
E AA + A L+ + DI ++V N L T P+ + MV + I F
Sbjct: 59 ESAASMATEACRRALSNAGLSAADIDGVIVTTNTHFLQTPPA-APMVAASLGAK-GILGF 116
Query: 246 NLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNTWYGGNEVDML-LPNCF-FRM 303
+L GC+ A+ A D++ + LVV TE +S T +DM NCF F
Sbjct: 117 DLSA-GCAGFGYALGAAADMIRGGGAATMLVVGTEKLSPT------IDMYDRGNCFIFAD 169
Query: 304 GAAAVLLSSCRLDKWRSKYEFKQLVRTHKGMDNRSFKCMHLKEDAEGRQGLSVSKDMIEV 363
GAAAV++ + F+ + T G D G Q ++ +D+ +
Sbjct: 170 GAAAVVVG---------ETPFQGIGPTVAGSD--------------GEQADAIRQDIDWI 206
Query: 364 GGHALKANITTLGPLVLPVSEQVHFFTNXXXXXXTKPYIPDYKQAFEHICILATSK---K 420
N + P V V + + + + I + + +
Sbjct: 207 ---TFAQNPSGPRPFVRLEGPAVFRWAAFKMGDVGRRAMDAAGVRPDQIDVFVPHQFNSR 263
Query: 421 VLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWYELAYLEANAGVKRGDRIWQTAFGS 480
+ + + KNL+L + + A+ +E GNTS++S+ +A L K GD +G+
Sbjct: 264 INELLVKNLQLRPDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGA 321
Query: 481 GVK 483
G+
Sbjct: 322 GLS 324
>pdb|1UB7|A Chain A, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|B Chain B, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|C Chain C, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|D Chain D, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus
Length = 322
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 7/71 (9%)
Query: 420 KVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWYELAYLEA-NAG-VKRGDRIWQTA 477
+++D ++ L L E + + ++R+GNTS++S+ LA EA +AG ++ GD + +
Sbjct: 251 RIIDAARERLGLPWERVAVN---VDRYGNTSTASI--PLALKEAVDAGRIREGDHVLLVS 305
Query: 478 FGSGVKCNSVV 488
FG+G+ + V
Sbjct: 306 FGAGLTWAAAV 316
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 447 GNTSSSSVWYELAYLEANAGVKRGDRIWQTAFGSGVKCN--SVVW 489
GN +SV L+ L+ +K+GDRI GSG+ C+ VVW
Sbjct: 301 GNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 345
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 447 GNTSSSSVWYELAYLEANAGVKRGDRIWQTAFGSGVKCN--SVVW 489
GN +SV L+ L+ +K+GDRI GSG+ C+ VVW
Sbjct: 300 GNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 344
>pdb|3FK5|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh (Xoo4209) From Xanthomonas Oryzae Pv.
Oryzae Kacc10331
Length = 338
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 447 GNTSSSSVWYELAYLEANAGVKRGDRIWQTAFGSGVKCN--SVVW 489
GN +SV L+ L+ +K+GDRI GSG+ C+ VVW
Sbjct: 294 GNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 338
>pdb|3IL3|A Chain A, Structure Of Haemophilus Influenzae Fabh
Length = 323
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 120/297 (40%), Gaps = 42/297 (14%)
Query: 188 EEAAMVLFGAIDDLLAATKIRPKDIRVLVV-NCGVLNTTPSLSAMVINHYKLRHNINSFN 246
E A + F A + + A +I P+DI +++V + PS + V + I SF+
Sbjct: 56 ETVATMGFEAAKNAIEAAQINPQDIELIIVATTSHSHAYPSAACQVQGLLNIDDAI-SFD 114
Query: 247 LGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNTWYGGNEVDMLLPNCFFRMGAA 306
L + + A+ +A + A ALV+ +++ S + ++L F GA
Sbjct: 115 LAA-AXTGFVYALSVADQFIRAGKVKKALVIGSDLNSRKLDETDRSTVVL----FGDGAG 169
Query: 307 AVLLSSCRLDKWRSKYEFKQLVRTHKGMDNRSFKCMHLKEDAEGRQGLSVSKDMIEVGGH 366
AV+L + E + ++ TH +H D L+ + IE G+
Sbjct: 170 AVILEAS---------EQEGIISTH----------LHASADKNNALVLAQPERGIEKSGY 210
Query: 367 ALKANITTLGPLVLPVSEQVH--FFTNXXXXXXTKPYIPDYKQAFEHICILATSKKVLDE 424
T V +S V N +P QA I I AT+KK+
Sbjct: 211 IEMQGNETFKLAVRELSNVVEETLLANNLDKKDLDWLVP--HQANLRI-ITATAKKL--- 264
Query: 425 IQKNLELTEELMEASRKTLERFGNTSSSSVWYELAYLEANAGVKRGDRIWQTAFGSG 481
+++++ ++ TL+++ N S+++V L + ++RG + AFG G
Sbjct: 265 ---EMDMSQVVV-----TLDKYANNSAATVPVALDEAIRDGRIQRGQLLLLEAFGGG 313
>pdb|1U6S|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-ketoacyl-acyl Carrier Protein Synthase
Iii And Lauroyl Coenzyme A
pdb|1U6S|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-ketoacyl-acyl Carrier Protein Synthase
Iii And Lauroyl Coenzyme A
pdb|1U6E|A Chain A, 1.85 Angstrom Crystal Structure Of The C112a Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier
Protein Synthase Iii (Fabh)
pdb|1U6E|B Chain B, 1.85 Angstrom Crystal Structure Of The C112a Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier
Protein Synthase Iii (Fabh)
Length = 335
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 427 KNLELTEELMEASRKTLERFGNTSSSSVWYELAYLEANAGVKRGDRIWQTAFGSGVK 483
KNL+L + + A+ +E GNTS++S+ +A L K GD +G+G+
Sbjct: 270 KNLQLRPDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLS 324
>pdb|1TAM|A Chain A, Human Immunodeficiency Virus, Nmr, Minimized Average
Structure
Length = 132
Score = 29.3 bits (64), Expect = 5.3, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 303 MGAAAVLLSSCRLDKW---------RSKYEFKQLVRTHKGMDNRSFKCMHLKEDAEG-RQ 352
MGA A +LS LD+W + KY+ K +V + ++ + L E +EG RQ
Sbjct: 1 MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVN-PGLLETSEGCRQ 59
Query: 353 GLSVSKDMIEVGGHALKANITTLGPL 378
L + ++ G L++ T+ L
Sbjct: 60 ILGQLQPSLQTGSEELRSLYNTVATL 85
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 431 LTEELMEASRKTLERFGNTSSSSVWYELAYLEANAGVKRGDRIWQTAFGSGVKC 484
L +E+M R+T + SS ++ VK GDRI T GSG C
Sbjct: 82 LIDEIMNMKRRTQIVYPKDSS--------FIAMMLDVKEGDRIIDTGVGSGAMC 127
>pdb|1XPL|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPM|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
Length = 390
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 9/84 (10%)
Query: 245 FNLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNTWYGGNE-------VDMLLP 297
F + C A AI LAKD L P LV++T+ G E V M++
Sbjct: 104 FEMKEAXCYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIA 163
Query: 298 N--CFFRMGAAAVLLSSCRLDKWR 319
+ + AV + D WR
Sbjct: 164 HNPSILALNEDAVAYTEDVYDFWR 187
>pdb|1XPK|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
pdb|1XPK|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 9/84 (10%)
Query: 245 FNLGGMGCSAGIIAIDLAKDLLNAYPGSYALVVSTEVVSNTWYGGNE-------VDMLLP 297
F + C A AI LAKD L P LV++T+ G E V M++
Sbjct: 104 FEMKEAXCYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIA 163
Query: 298 N--CFFRMGAAAVLLSSCRLDKWR 319
+ + AV + D WR
Sbjct: 164 HNPSILALNEDAVAYTEDVYDFWR 187
>pdb|2HMX|A Chain A, Human Immunodeficiency Virus Type 1 Matrix Protein
Length = 133
Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 303 MGAAAVLLSSCRLDKW---------RSKYEFKQLVRTHKGMDNRSFKCMHLKEDAEG-RQ 352
MGA A +LS LDKW + +Y+ K +V + ++ + L E +EG RQ
Sbjct: 2 MGARASVLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVN-PGLLETSEGCRQ 60
Query: 353 GLSVSKDMIEVGGHALKANITTLGPL 378
L + ++ G L++ T+ L
Sbjct: 61 ILGQLQPSLQTGSEELRSLYNTIAVL 86
>pdb|1HIW|A Chain A, Trimeric Hiv-1 Matrix Protein
pdb|1HIW|B Chain B, Trimeric Hiv-1 Matrix Protein
pdb|1HIW|C Chain C, Trimeric Hiv-1 Matrix Protein
pdb|1HIW|Q Chain Q, Trimeric Hiv-1 Matrix Protein
pdb|1HIW|R Chain R, Trimeric Hiv-1 Matrix Protein
pdb|1HIW|S Chain S, Trimeric Hiv-1 Matrix Protein
pdb|2GOL|A Chain A, Xray Structure Of Gag278
Length = 133
Score = 28.9 bits (63), Expect = 7.3, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 303 MGAAAVLLSSCRLDKW---------RSKYEFKQLVRTHKGMDNRSFKCMHLKEDAEG-RQ 352
MGA A +LS LDKW + +Y+ K +V + ++ + L E +EG RQ
Sbjct: 2 MGARASVLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVN-PGLLETSEGCRQ 60
Query: 353 GLSVSKDMIEVGGHALKANITTLGPL 378
L + ++ G L++ T+ L
Sbjct: 61 ILGQLQPSLQTGSEELRSLYNTIAVL 86
>pdb|3IL9|A Chain A, Structure Of E. Coli Fabh
pdb|3IL9|B Chain B, Structure Of E. Coli Fabh
Length = 340
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 442 TLERFGNTSSSSVWYELAYLEANAGVKRGDRIWQTAFGSGVKCNSVVWK 490
TL+R GNTS++SV L + +K G + AFG G S + +
Sbjct: 291 TLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVR 339
>pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HND|A Chain A, Crystal Structure Of Beta-ketoacyl-acp Synthase Iii-coa
Complex
pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Malonyl-Coa
pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
Tetragonal Form
pdb|2EFT|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2EFT|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2GYO|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
pdb|2GYO|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
Length = 317
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 420 KVLDEIQKNLELTEELMEASRKTLERFGNTSSSSVWYELAYLEANAGVKRGDRIWQTAFG 479
+++ K L ++ M+ TL+R GNTS++SV L + +K G + AFG
Sbjct: 249 RIISATAKKLGMS---MDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFG 305
Query: 480 SG 481
G
Sbjct: 306 GG 307
>pdb|1MZS|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii With
Bound Dichlorobenzyloxy-Indole-Carboxylic Acid Inhibitor
Length = 317
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 442 TLERFGNTSSSSVWYELAYLEANAGVKRGDRIWQTAFGSGVKCNSVVWK 490
TL+R GNTS++SV L + +K G + AFG G S + +
Sbjct: 268 TLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVR 316
>pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Degraded Form Of Acetyl-Coa
Length = 317
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 442 TLERFGNTSSSSVWYELAYLEANAGVKRGDRIWQTAFGSG 481
TL+R GNTS++SV L + +K G + AFG G
Sbjct: 268 TLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGG 307
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,057,916
Number of Sequences: 62578
Number of extensions: 621316
Number of successful extensions: 1395
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1302
Number of HSP's gapped (non-prelim): 117
length of query: 508
length of database: 14,973,337
effective HSP length: 103
effective length of query: 405
effective length of database: 8,527,803
effective search space: 3453760215
effective search space used: 3453760215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)