BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038126
         (169 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
           (Eye Lens Protein)
 pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
           (Eye Lens Protein)
          Length = 466

 Score = 27.7 bits (60), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 109 SLAIVSDAVDYLSPKTLPELARVSADGVVIFAGYPHQQRAK 149
           SL+I+S  +  L  KTL E A +  D  VI  GY H Q+A+
Sbjct: 128 SLSIISTHLLQL-IKTLVERAAIEID--VILPGYTHLQKAQ 165


>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
 pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
 pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
 pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
          Length = 468

 Score = 27.7 bits (60), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 109 SLAIVSDAVDYLSPKTLPELARVSADGVVIFAGYPHQQRAK 149
           SL+I+S  +  L  KTL E A +  D  VI  GY H Q+A+
Sbjct: 130 SLSIISTHLLQL-IKTLVERAAIEID--VILPGYTHLQKAQ 167


>pdb|1U15|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
           Mutant (Dlm)
 pdb|1U15|B Chain B, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
           Mutant (Dlm)
 pdb|1U15|C Chain C, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
           Mutant (Dlm)
 pdb|1U15|D Chain D, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
           Mutant (Dlm)
 pdb|1U16|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
           Mutant (Dlm) In Complex With Sulfate
          Length = 472

 Score = 27.7 bits (60), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 109 SLAIVSDAVDYLSPKTLPELARVSADGVVIFAGYPHQQRAK 149
           SL+I+S  +  L  KTL E A +  D  VI  GY H Q+A+
Sbjct: 128 SLSIISTHLLQL-IKTLVERAAIEID--VILPGYTHLQKAQ 165


>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
 pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
 pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
 pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
          Length = 468

 Score = 27.7 bits (60), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 109 SLAIVSDAVDYLSPKTLPELARVSADGVVIFAGYPHQQRAK 149
           SL+I+S  +  L  KTL E A +  D  VI  GY H Q+A+
Sbjct: 130 SLSIISTHLLQL-IKTLVERAAIEID--VILPGYTHLQKAQ 167


>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
           (Eye Lens Protein)
 pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
           (Eye Lens Protein)
 pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
           (Eye Lens Protein)
 pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
           (Eye Lens Protein)
          Length = 468

 Score = 27.7 bits (60), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 109 SLAIVSDAVDYLSPKTLPELARVSADGVVIFAGYPHQQRAK 149
           SL+I+S  +  L  KTL E A +  D  VI  GY H Q+A+
Sbjct: 130 SLSIISTHLLQL-IKTLVERAAIEID--VILPGYTHLQKAQ 167


>pdb|1TJU|A Chain A, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
 pdb|1TJU|B Chain B, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
 pdb|1TJU|C Chain C, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
 pdb|1TJU|D Chain D, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
          Length = 474

 Score = 27.7 bits (60), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 109 SLAIVSDAVDYLSPKTLPELARVSADGVVIFAGYPHQQRAK 149
           SL+I+S  +  L  KTL E A +  D  VI  GY H Q+A+
Sbjct: 130 SLSIISTHLLQL-IKTLVERAAIEID--VILPGYSHLQKAQ 167


>pdb|1EU1|A Chain A, The Crystal Structure Of Rhodobacter Sphaeroides
           Dimethylsulfoxide Reductase Reveals Two Distinct
           Molybdenum Coordination Environments
          Length = 780

 Score = 27.7 bits (60), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 64  EDNEAWGVEPFDSDDADANRMSLVRKGIVQATDIKFPLAFR 104
           E+  A   EP+D D A ++++  V   I   T IK+P+  R
Sbjct: 22  ENGRAVAFEPWDKDPAPSHQLPGVLDSIYSPTRIKYPMVRR 62


>pdb|3SLU|A Chain A, Crystal Structure Of Nmb0315
 pdb|3SLU|B Chain B, Crystal Structure Of Nmb0315
          Length = 371

 Score = 27.3 bits (59), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 95  TDIKFPLAFRAKS-FSLAIVSDAVDYLSPKTLPELARVSADGVVIFAG 141
           T I  P  +R         +   +DY +P+  P   R SADGV+ F G
Sbjct: 226 TRISSPFGYRMHPILHTWRLHTGIDYAAPQGTP--VRASADGVITFKG 271


>pdb|1TJV|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
 pdb|1TJV|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
 pdb|1TJV|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
 pdb|1TJV|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
 pdb|1TJW|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
           With Bound Argininosuccinate
 pdb|1TJW|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
           With Bound Argininosuccinate
 pdb|1TJW|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
           With Bound Argininosuccinate
 pdb|1TJW|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
           With Bound Argininosuccinate
          Length = 474

 Score = 27.3 bits (59), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 109 SLAIVSDAVDYLSPKTLPELARVSADGVVIFAGYPHQQRAK 149
           SL+I+S  +  L  KTL E A +  D  VI  GY H Q+A+
Sbjct: 130 SLSIISTHLLQL-IKTLVERAAIEID--VILPGYDHLQKAQ 167


>pdb|1XWO|A Chain A, Crystal Structrue Of Goose Delta Crystallin
 pdb|1XWO|B Chain B, Crystal Structrue Of Goose Delta Crystallin
 pdb|1XWO|C Chain C, Crystal Structrue Of Goose Delta Crystallin
 pdb|1XWO|D Chain D, Crystal Structrue Of Goose Delta Crystallin
          Length = 465

 Score = 26.9 bits (58), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 109 SLAIVSDAVDYLSPKTLPELARVSADGVVIFAGYPHQQRAK 149
           SL+++S  +  L  KTL E A +  D  VI  GY H Q+A+
Sbjct: 127 SLSVISTHLLQL-IKTLVERAAIEID--VILPGYTHLQKAQ 164


>pdb|1CLM|A Chain A, Structure Of Paramecium Tetraurelia Calmodulin At 1.8
           Angstroms Resolution
          Length = 148

 Score = 26.9 bits (58), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 16/92 (17%)

Query: 51  PETCSVVCKLLKEEDNEAWGVEPFDSDDADANRMSLVRKGIVQATDIKFPLAFRAKSFSL 110
           PE  S++ + +KE+D+E   +E F   D D N       G++ A +++  +     +   
Sbjct: 66  PEFLSLMARKMKEQDSEEELIEAFKVFDRDGN-------GLISAAELRHVMT----NLGE 114

Query: 111 AIVSDAVDYLSPKTLPELARVSADGVVIFAGY 142
            +  D VD +  +     A +  DG + +  +
Sbjct: 115 KLTDDEVDEMIRE-----ADIDGDGHINYEEF 141


>pdb|1EXR|A Chain A, The 1.0 Angstrom Crystal Structure Of Ca+2 Bound
           Calmodulin
 pdb|1N0Y|A Chain A, Crystal Structure Of Pb-Bound Calmodulin
 pdb|1N0Y|B Chain B, Crystal Structure Of Pb-Bound Calmodulin
 pdb|1OSA|A Chain A, Crystal Structure Of Recombinant Paramecium Tetraurelia
           Calmodulin At 1.68 Angstroms Resolution
          Length = 148

 Score = 26.9 bits (58), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 16/92 (17%)

Query: 51  PETCSVVCKLLKEEDNEAWGVEPFDSDDADANRMSLVRKGIVQATDIKFPLAFRAKSFSL 110
           PE  S++ + +KE+D+E   +E F   D D N       G++ A +++  +     +   
Sbjct: 66  PEFLSLMARKMKEQDSEEELIEAFKVFDRDGN-------GLISAAELRHVMT----NLGE 114

Query: 111 AIVSDAVDYLSPKTLPELARVSADGVVIFAGY 142
            +  D VD +  +     A +  DG + +  +
Sbjct: 115 KLTDDEVDEMIRE-----ADIDGDGHINYEEF 141


>pdb|3RZU|A Chain A, The Crystal Structure Of The Catalytic Domain Of Amsh
 pdb|3RZU|B Chain B, The Crystal Structure Of The Catalytic Domain Of Amsh
 pdb|3RZU|C Chain C, The Crystal Structure Of The Catalytic Domain Of Amsh
 pdb|3RZU|D Chain D, The Crystal Structure Of The Catalytic Domain Of Amsh
 pdb|3RZU|E Chain E, The Crystal Structure Of The Catalytic Domain Of Amsh
 pdb|3RZU|F Chain F, The Crystal Structure Of The Catalytic Domain Of Amsh
 pdb|3RZU|G Chain G, The Crystal Structure Of The Catalytic Domain Of Amsh
          Length = 187

 Score = 26.6 bits (57), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 23 GFRPDFNPGRVIPGPQCSGTVRVRTGRDPETCSVVC-KLLKEEDNEAWGVEPFDSDDAD 80
          G R    PGR+ P  Q        T R  ETC ++C KL++ E      + P  S  +D
Sbjct: 16 GLRHVVVPGRLCP--QFLQLASANTARGVETCGILCGKLMRNEFTITHVLIPKQSAGSD 72


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,271,267
Number of Sequences: 62578
Number of extensions: 205507
Number of successful extensions: 470
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 465
Number of HSP's gapped (non-prelim): 20
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)