BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038126
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M2Y6|Y3972_ARATH Uncharacterized protein At3g49720 OS=Arabidopsis thaliana
GN=At3g49720 PE=1 SV=1
Length = 261
Score = 179 bits (454), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 86/122 (70%), Positives = 104/122 (85%), Gaps = 4/122 (3%)
Query: 51 PETCSVVCKLLKEEDNEAWGVEPFDSDDADANRMSLVRKGIVQATDIKFPLAFRAKSFSL 110
P+TCSVV LLKEE+ EAWGVEP+D +DAD++ S V KG+V+ DIKFPL +RAKSFSL
Sbjct: 99 PDTCSVVSSLLKEEETEAWGVEPYDIEDADSHCKSFVSKGLVRVADIKFPLPYRAKSFSL 158
Query: 111 AIVSDAVDYLSP----KTLPELARVSADGVVIFAGYPHQQRAKVSELSKFGRPAKLRSST 166
IVSDA+DYLSP KT+PELARV++DGVV+FAG P QQRAKV+ELSKFGRPAK+RS++
Sbjct: 159 VIVSDALDYLSPKYLNKTVPELARVASDGVVLFAGLPGQQRAKVAELSKFGRPAKMRSAS 218
Query: 167 WW 168
WW
Sbjct: 219 WW 220
>sp|Q8N5I2|ARRD1_HUMAN Arrestin domain-containing protein 1 OS=Homo sapiens GN=ARRDC1 PE=2
SV=1
Length = 433
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 24 FRPDFNPGRVI--PGPQCSGTVRVRTGRDPE------TCSVVCKLLKEEDNEAWGVEPFD 75
F + GRV+ PG +GTVRVR G TC C + + ++ AW VE
Sbjct: 7 FEISLSHGRVVYSPGEPLAGTVRVRLGAPLPFRAIRVTCIGSCGVSNKANDTAWVVE--- 63
Query: 76 SDDADANRMSLVRKGIVQATDIKFPLAF 103
+ + +SL KG + A + FP F
Sbjct: 64 -EGYFNSSLSLADKGSLPAGEHSFPFQF 90
>sp|Q8YRP3|SPEA_NOSS1 Biosynthetic arginine decarboxylase OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=speA PE=3 SV=1
Length = 679
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 19/123 (15%)
Query: 57 VCKLLKEEDNEA------WGVEPFDSDDADANRMSLVRKGIVQATDIKFPL--AFRAKSF 108
V ++ K ED+EA WG +P+ S +A A +++ KG + F L A + +S
Sbjct: 49 VSRVWKIEDSEALYRIEGWG-QPYFSINA-AGHVTVSPKGDRGGSLDLFELVNALKQRSL 106
Query: 109 SLA-------IVSDAVDYLSPKTLPELARVSADGVV--IFAGYPHQQRAKVSELSKFGRP 159
L I+ D ++ L+ +AR + GV +F +QQR + +L +FGRP
Sbjct: 107 GLPLLIRFSDILEDRIERLNACFAKAIARYNYPGVYRGVFPVKCNQQRHLIEDLVRFGRP 166
Query: 160 AKL 162
+
Sbjct: 167 HQF 169
>sp|P52412|ACP2_CUPLA Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata
GN=ACL1.2 PE=2 SV=1
Length = 137
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 40 SGTVRVRTGRDPETCSVVCKLLKEE-----DNEAWGVEPFDSDDADANRMSLVRKGIVQA 94
S ++RV PET + VC ++K++ D++ GV F + AD SL IV
Sbjct: 46 SFSLRVNCQAKPETVTKVCNIVKKQLALPDDSDVSGVSKFSALGAD----SLDTVEIVMG 101
Query: 95 TDIKFPLAFRAKSF-SLAIVSDAVDYL 120
+ +F ++ +S S+ V DA D +
Sbjct: 102 LEEEFGISVEEESAQSIQTVQDAADLI 128
>sp|Q0BBR2|Y2855_BURCM UPF0042 nucleotide-binding protein Bamb_2855 OS=Burkholderia
ambifaria (strain ATCC BAA-244 / AMMD) GN=Bamb_2855 PE=3
SV=2
Length = 302
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 106 KSFSLAIVSDA----VDYLSPKTLPELARVSADG 135
KS +L + DA VD L P LPELAR ADG
Sbjct: 14 KSVALNALEDAGYYCVDNLPPHVLPELARYLADG 47
>sp|B1YN45|Y2713_BURA4 UPF0042 nucleotide-binding protein BamMC406_2713 OS=Burkholderia
ambifaria (strain MC40-6) GN=BamMC406_2713 PE=3 SV=2
Length = 302
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 106 KSFSLAIVSDA----VDYLSPKTLPELARVSADG 135
KS +L + DA VD L P LPELAR ADG
Sbjct: 14 KSVALNALEDAGYYCVDNLPPHVLPELARYLADG 47
>sp|P52414|ACP4_CUPLA Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata GN=ACL1
PE=3 SV=1
Length = 139
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 44 RVRTGRDPETCSVVCKLLKEE-----DNEAWGVEPFDSDDADANRMSLVRKGIVQATDIK 98
RV PET + VC+++K++ D+E G+ F + AD SL IV + +
Sbjct: 52 RVSCQAKPETVAKVCRIVKKQLALPDDSEVNGLSKFSALGAD----SLDTVEIVMGLEEE 107
Query: 99 FPLAFRAKSF-SLAIVSDAVDYL 120
F ++ +S S+ V DA D +
Sbjct: 108 FGISVEEESAQSIQTVQDAADLI 130
>sp|Q03019|TWINE_DROME Cdc25-like protein phosphatase twine OS=Drosophila melanogaster
GN=twe PE=1 SV=2
Length = 426
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 61 LKEEDNE--AWGVEPFDSDDADANRMSLVRKGIVQATDIKFPL 101
++EED+E A G E FD DAD + RK VQ T +++ L
Sbjct: 10 VEEEDDESGACGQENFDPHDADMEYQAKRRKSAVQETPLQWML 52
>sp|P52411|ACP1_CUPLA Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata
GN=ACL1.1 PE=2 SV=1
Length = 140
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 35/143 (24%)
Query: 1 MAKSRTGSGYCNDRILSGCNKSGFRPDFNPGRV-----------------IPGPQCSGTV 43
MA + G+ C + F P PGR+ + + S +
Sbjct: 1 MASAAAGASIC-------IKSASFSP-LAPGRISSLRSVSLPVSRKSFPSLKSSKSSFAL 52
Query: 44 RVRTGRDPETCSVVCKLLKEE-----DNEAWGVEPFDSDDADANRMSLVRKGIVQATDIK 98
RV PET + VC ++K++ D+E G+ F + AD SL IV + +
Sbjct: 53 RVSCQAKPETVAKVCGIVKKQLALPDDSEVNGLSKFSALGAD----SLDTVEIVMGLEEE 108
Query: 99 FPLAFRAKSF-SLAIVSDAVDYL 120
F ++ +S S+ V DA D +
Sbjct: 109 FGISVEEESAQSIQTVQDAADLI 131
>sp|P27620|TAGA_BACSU Putative N-acetylmannosaminyltransferase OS=Bacillus subtilis
(strain 168) GN=tagA PE=2 SV=1
Length = 256
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 87 VRKGIVQATDIKFPLAFRAKSFSLAIVSDAVDYLSPKTL--PELARVSADGVVIFAGYPH 144
V KG+V ++P + +A SD Y+ +TL ++AR + D V + GYPH
Sbjct: 114 VIKGVVSKISSEYP------NIKIAGYSDG--YVQDRTLVAKQIARANPDMVFVALGYPH 165
Query: 145 QQR 147
Q++
Sbjct: 166 QEK 168
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,621,718
Number of Sequences: 539616
Number of extensions: 2636415
Number of successful extensions: 6648
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 6646
Number of HSP's gapped (non-prelim): 15
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)