Query 038126
Match_columns 169
No_of_seqs 23 out of 25
Neff 1.8
Searched_HMMs 46136
Date Fri Mar 29 07:51:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07021 MetW: Methionine bios 98.5 7.9E-08 1.7E-12 78.9 2.2 93 45-142 16-112 (193)
2 PF08241 Methyltransf_11: Meth 97.2 0.00025 5.4E-09 45.0 2.5 90 47-139 1-95 (95)
3 PF13489 Methyltransf_23: Meth 96.1 0.0016 3.6E-08 45.3 0.4 85 45-141 25-115 (161)
4 TIGR02081 metW methionine bios 96.0 0.01 2.2E-07 45.0 4.1 92 46-142 17-112 (194)
5 TIGR03587 Pse_Me-ase pseudamin 95.3 0.029 6.2E-07 44.3 4.4 92 46-142 47-143 (204)
6 PRK10258 biotin biosynthesis p 93.7 0.1 2.2E-06 40.6 4.2 94 46-143 46-142 (251)
7 PRK05785 hypothetical protein; 93.2 0.21 4.6E-06 39.7 5.3 95 45-145 54-151 (226)
8 TIGR02072 BioC biotin biosynth 92.8 0.22 4.7E-06 36.9 4.5 95 45-142 37-136 (240)
9 TIGR02021 BchM-ChlM magnesium 92.2 0.2 4.4E-06 38.4 3.8 92 45-144 58-160 (219)
10 PF08242 Methyltransf_12: Meth 91.7 0.078 1.7E-06 35.4 0.9 74 47-120 1-79 (99)
11 PRK11036 putative S-adenosyl-L 90.6 0.18 3.9E-06 39.9 2.1 92 45-140 47-148 (255)
12 PRK07580 Mg-protoporphyrin IX 87.8 2 4.3E-05 32.4 5.9 86 46-139 67-163 (230)
13 TIGR02752 MenG_heptapren 2-hep 87.5 0.77 1.7E-05 35.0 3.6 94 46-140 49-150 (231)
14 PLN02233 ubiquinone biosynthes 86.9 2.2 4.7E-05 34.6 6.1 48 93-141 132-182 (261)
15 PTZ00098 phosphoethanolamine N 86.5 0.45 9.7E-06 38.6 1.9 92 47-142 57-157 (263)
16 PRK08317 hypothetical protein; 85.5 0.77 1.7E-05 33.7 2.6 94 47-141 24-124 (241)
17 TIGR01934 MenG_MenH_UbiE ubiqu 85.1 1.4 3E-05 32.5 3.7 93 47-142 44-144 (223)
18 PRK06202 hypothetical protein; 84.7 1.1 2.4E-05 34.8 3.2 92 45-139 63-165 (232)
19 PRK11207 tellurite resistance 84.1 2 4.3E-05 33.2 4.3 91 44-139 32-132 (197)
20 PLN02244 tocopherol O-methyltr 84.0 2.3 4.9E-05 35.9 5.0 94 45-141 121-223 (340)
21 PLN02336 phosphoethanolamine N 83.5 1.1 2.3E-05 38.6 2.9 93 46-141 41-142 (475)
22 PRK01683 trans-aconitate 2-met 83.0 1.6 3.4E-05 34.1 3.4 94 44-141 33-130 (258)
23 PRK00216 ubiE ubiquinone/menaq 81.6 1.7 3.8E-05 32.3 3.1 96 45-141 54-158 (239)
24 smart00828 PKS_MT Methyltransf 81.6 2.4 5.2E-05 32.2 3.9 93 46-142 3-105 (224)
25 TIGR00452 methyltransferase, p 79.6 2.7 5.9E-05 36.1 4.0 92 47-140 126-224 (314)
26 PRK15068 tRNA mo(5)U34 methylt 79.3 2.5 5.4E-05 35.8 3.7 94 46-141 126-226 (322)
27 TIGR00477 tehB tellurite resis 79.1 4.7 0.0001 31.1 4.8 109 45-158 33-160 (195)
28 cd02440 AdoMet_MTases S-adenos 79.1 1.8 3.9E-05 26.1 2.1 92 47-140 3-103 (107)
29 TIGR01983 UbiG ubiquinone bios 77.9 4.8 0.0001 30.4 4.5 92 45-141 48-149 (224)
30 PF02562 PhoH: PhoH-like prote 77.6 2.4 5.2E-05 34.8 3.0 62 82-149 95-161 (205)
31 PLN02396 hexaprenyldihydroxybe 77.5 2.1 4.5E-05 36.9 2.7 92 45-140 134-234 (322)
32 PRK00312 pcm protein-L-isoaspa 76.4 4.8 0.0001 30.8 4.2 93 47-146 83-181 (212)
33 PRK05134 bifunctional 3-demeth 76.2 1.8 3.9E-05 33.2 1.8 97 46-143 52-153 (233)
34 PLN02336 phosphoethanolamine N 76.2 2.6 5.6E-05 36.3 2.9 94 45-141 269-369 (475)
35 PRK11088 rrmA 23S rRNA methylt 75.4 9.5 0.00021 30.7 5.8 90 47-145 90-184 (272)
36 PF05401 NodS: Nodulation prot 75.2 2.4 5.2E-05 35.7 2.4 48 93-142 94-147 (201)
37 PLN02490 MPBQ/MSBQ methyltrans 71.2 4.5 9.7E-05 35.4 3.3 92 47-141 118-215 (340)
38 PF13649 Methyltransf_25: Meth 70.2 2.3 4.9E-05 28.7 1.0 58 66-126 25-87 (101)
39 PLN02232 ubiquinone biosynthes 65.9 5.1 0.00011 30.1 2.2 47 92-139 30-79 (160)
40 PF12847 Methyltransf_18: Meth 64.1 4.9 0.00011 26.7 1.6 94 46-140 5-110 (112)
41 PRK00517 prmA ribosomal protei 60.8 8.6 0.00019 30.8 2.8 103 47-157 124-230 (250)
42 PRK12335 tellurite resistance 60.6 9 0.0002 31.3 2.9 90 45-139 123-221 (287)
43 TIGR02469 CbiT precorrin-6Y C5 59.5 8.5 0.00019 25.6 2.2 95 46-141 23-122 (124)
44 PF12147 Methyltransf_20: Puta 58.6 6.7 0.00014 35.3 2.0 58 109-166 211-278 (311)
45 TIGR03534 RF_mod_PrmC protein- 57.9 40 0.00086 25.7 5.8 109 45-157 90-233 (251)
46 PF11899 DUF3419: Protein of u 57.2 5.7 0.00012 35.4 1.3 35 105-139 293-332 (380)
47 PRK15451 tRNA cmo(5)U34 methyl 57.0 9.4 0.0002 30.4 2.4 91 46-141 60-164 (247)
48 TIGR00406 prmA ribosomal prote 55.7 12 0.00026 30.8 2.9 105 46-152 163-270 (288)
49 PRK08287 cobalt-precorrin-6Y C 54.9 14 0.0003 27.8 2.9 107 46-157 35-148 (187)
50 PLN02585 magnesium protoporphy 54.6 8.9 0.00019 33.0 2.0 94 45-144 147-252 (315)
51 COG3897 Predicted methyltransf 52.1 15 0.00033 31.7 3.0 105 47-156 86-193 (218)
52 TIGR00740 methyltransferase, p 52.0 22 0.00048 27.7 3.7 90 47-141 58-161 (239)
53 PF13847 Methyltransf_31: Meth 50.4 9.8 0.00021 27.5 1.4 96 45-144 6-112 (152)
54 PRK00121 trmB tRNA (guanine-N( 49.8 13 0.00027 29.0 2.0 117 45-161 43-177 (202)
55 TIGR00417 speE spermidine synt 49.3 28 0.0006 28.4 4.0 99 45-146 75-192 (270)
56 PRK14103 trans-aconitate 2-met 48.2 28 0.00062 27.5 3.8 89 45-140 32-125 (255)
57 PRK11873 arsM arsenite S-adeno 47.1 33 0.00072 27.2 4.1 93 47-143 82-185 (272)
58 PF08955 BofC_C: BofC C-termin 45.1 12 0.00027 27.3 1.2 16 131-146 15-31 (75)
59 smart00138 MeTrc Methyltransfe 44.9 12 0.00026 30.7 1.3 48 94-142 191-242 (264)
60 TIGR00537 hemK_rel_arch HemK-r 43.1 52 0.0011 24.5 4.4 69 45-117 22-92 (179)
61 PF08003 Methyltransf_9: Prote 42.1 31 0.00067 31.0 3.5 118 47-169 120-245 (315)
62 COG2226 UbiE Methylase involve 37.6 27 0.00059 29.5 2.3 77 66-144 76-161 (238)
63 PF02887 PK_C: Pyruvate kinase 36.3 13 0.00028 26.6 0.2 21 67-87 57-77 (117)
64 PF01978 TrmB: Sugar-specific 36.2 30 0.00066 22.4 2.0 27 78-105 38-64 (68)
65 COG2126 RPL37A Ribosomal prote 35.7 15 0.00032 26.6 0.4 13 155-167 38-50 (61)
66 PRK13944 protein-L-isoaspartat 35.5 62 0.0013 25.1 3.9 87 46-141 76-173 (205)
67 PF01209 Ubie_methyltran: ubiE 34.2 41 0.00088 27.4 2.8 98 47-145 52-159 (233)
68 PF01558 POR: Pyruvate ferredo 32.9 52 0.0011 24.6 3.0 77 56-142 11-87 (173)
69 PRK00811 spermidine synthase; 32.7 78 0.0017 26.3 4.2 99 44-145 78-196 (283)
70 KOG2902 Dihydroorotase [Nucleo 32.1 16 0.00035 33.2 0.2 22 118-139 74-95 (344)
71 KOG0829 60S ribosomal protein 32.0 18 0.00038 30.4 0.4 10 95-104 141-150 (169)
72 PRK00440 rfc replication facto 30.4 16 0.00035 28.7 -0.1 52 95-151 3-55 (319)
73 TIGR02085 meth_trns_rumB 23S r 30.3 32 0.0007 29.6 1.7 88 65-153 255-346 (374)
74 PF12738 PTCB-BRCT: twin BRCT 29.1 40 0.00086 21.4 1.6 21 136-156 2-22 (63)
75 PRK02006 murD UDP-N-acetylmura 28.6 70 0.0015 28.1 3.5 80 47-132 13-94 (498)
76 PF12681 Glyoxalase_2: Glyoxal 27.8 71 0.0015 20.5 2.6 35 74-109 62-96 (108)
77 cd09011 Glo_EDI_BRP_like_23 Th 26.6 73 0.0016 21.4 2.6 35 74-108 70-104 (120)
78 PF10007 DUF2250: Uncharacteri 26.4 60 0.0013 24.1 2.3 37 49-96 19-55 (92)
79 cd06377 PBP1_iGluR_NMDA_NR3 N- 25.8 73 0.0016 28.5 3.2 86 50-146 5-92 (382)
80 PRK09328 N5-glutamine S-adenos 25.6 1.6E+02 0.0035 22.9 4.7 67 45-113 111-181 (275)
81 cd05014 SIS_Kpsf KpsF-like pro 25.5 67 0.0015 22.2 2.3 24 127-150 41-64 (128)
82 PF03815 LCCL: LCCL domain; I 25.3 36 0.00077 24.8 0.9 28 63-92 31-58 (96)
83 PF13511 DUF4124: Domain of un 25.1 32 0.00069 21.9 0.6 23 131-153 19-41 (60)
84 PRK13942 protein-L-isoaspartat 23.7 1.3E+02 0.0028 23.6 3.8 86 46-139 80-174 (212)
85 COG2813 RsmC 16S RNA G1207 met 23.5 83 0.0018 28.0 3.0 50 115-164 39-97 (300)
86 PF14789 THDPS_M: Tetrahydrodi 23.5 59 0.0013 21.5 1.6 33 68-100 5-40 (41)
87 TIGR03334 IOR_beta indolepyruv 23.4 87 0.0019 24.3 2.8 45 91-141 49-93 (189)
88 COG3824 Predicted Zn-dependent 22.8 26 0.00056 28.6 -0.2 32 111-146 19-50 (136)
89 PRK03612 spermidine synthase; 22.7 1.5E+02 0.0034 26.9 4.6 99 45-146 300-421 (521)
90 TIGR01082 murC UDP-N-acetylmur 22.7 1.1E+02 0.0024 26.4 3.6 90 48-144 6-109 (448)
91 PF13401 AAA_22: AAA domain; P 22.3 37 0.00079 23.0 0.5 34 110-144 89-126 (131)
92 PRK11705 cyclopropane fatty ac 22.0 1.5E+02 0.0033 26.0 4.3 88 47-140 172-266 (383)
93 PF08424 NRDE-2: NRDE-2, neces 21.8 7.3 0.00016 32.7 -3.7 53 93-145 258-317 (321)
94 KOG0026 Anthranilate synthase, 21.5 65 0.0014 28.0 1.9 19 123-141 54-72 (223)
95 KOG1541 Predicted protein carb 21.4 82 0.0018 28.2 2.5 63 56-122 63-127 (270)
96 PF14078 DUF4259: Domain of un 21.4 46 0.00099 24.0 0.8 22 68-89 2-23 (128)
97 COG2229 Predicted GTPase [Gene 20.9 55 0.0012 27.6 1.4 26 124-149 55-82 (187)
98 PTZ00217 flap endonuclease-1; 20.5 59 0.0013 29.1 1.5 46 44-93 130-175 (393)
99 PF03141 Methyltransf_29: Puta 20.4 77 0.0017 30.3 2.3 106 41-149 116-227 (506)
100 PF01380 SIS: SIS domain SIS d 20.4 1.2E+02 0.0026 20.6 2.7 26 128-153 48-73 (131)
101 smart00603 LCCL LCCL domain. 20.1 77 0.0017 22.9 1.8 29 63-93 29-57 (85)
No 1
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.45 E-value=7.9e-08 Score=78.90 Aligned_cols=93 Identities=25% Similarity=0.345 Sum_probs=82.5
Q ss_pred hhhccCCCchhhhhhhhcccccccccccccCCchhhHHHHHHHHhcc-eeeeeecCccc-ccCCceeEEEecccccccCC
Q 038126 45 VRTGRDPETCSVVCKLLKEEDNEAWGVEPFDSDDADANRMSLVRKGI-VQATDIKFPLA-FRAKSFSLAIVSDAVDYLSP 122 (169)
Q Consensus 45 ~aLHvGPdTC~VVskLLkEe~tEAWGVEPyd~edad~~CksLVrKGi-VRvADIkfpLP-YR~KSFSlViVSDalDyLsp 122 (169)
|-|++|-........|.++.+.++.|||-. +.+..+-|+||+ |--.|+.-.|+ |..+||..||.|++|..+.-
T Consensus 16 rVLDLGCGdG~LL~~L~~~k~v~g~GvEid-----~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~ 90 (193)
T PF07021_consen 16 RVLDLGCGDGELLAYLKDEKQVDGYGVEID-----PDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRR 90 (193)
T ss_pred EEEecCCCchHHHHHHHHhcCCeEEEEecC-----HHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhH
Confidence 448999999999999999999999999832 345677799999 99999999997 99999999999999999976
Q ss_pred --CCchhhhhcccCceEEEecC
Q 038126 123 --KTLPELARVSADGVVIFAGY 142 (169)
Q Consensus 123 --kTLPeLaRvsadglVif~G~ 142 (169)
+.|-|+.||...+||-|.-|
T Consensus 91 P~~vL~EmlRVgr~~IVsFPNF 112 (193)
T PF07021_consen 91 PDEVLEEMLRVGRRAIVSFPNF 112 (193)
T ss_pred HHHHHHHHHHhcCeEEEEecCh
Confidence 89999999999999988765
No 2
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.24 E-value=0.00025 Score=45.04 Aligned_cols=90 Identities=17% Similarity=0.197 Sum_probs=62.7
Q ss_pred hccCCCchhhhhhhhcccccccccccccCCchhhHHHHHHHHhcc--eeeeeecCcccccCCceeEEEecccccccCC--
Q 038126 47 TGRDPETCSVVCKLLKEEDNEAWGVEPFDSDDADANRMSLVRKGI--VQATDIKFPLAFRAKSFSLAIVSDAVDYLSP-- 122 (169)
Q Consensus 47 LHvGPdTC~VVskLLkEe~tEAWGVEPyd~edad~~CksLVrKGi--VRvADIkfpLPYR~KSFSlViVSDalDyLsp-- 122 (169)
|-+|..+......|.+....+.+|+|+..- .-..|+...++.. ++.+|+. .||+...||.+|+..+++.|+..
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~--~~~~~~~~~~~~~~~~~~~d~~-~l~~~~~sfD~v~~~~~~~~~~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEE--MLEQARKRLKNEGVSFRQGDAE-DLPFPDNSFDVVFSNSVLHHLEDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HH--HHHHHHHHTTTSTEEEEESBTT-SSSS-TT-EEEEEEESHGGGSSHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHH--HHHHHHhcccccCchheeehHH-hCccccccccccccccceeeccCHH
Confidence 346777777888888877889999998643 4455565555443 7777754 55999999999999999999933
Q ss_pred CCchhhhhccc-CceEEE
Q 038126 123 KTLPELARVSA-DGVVIF 139 (169)
Q Consensus 123 kTLPeLaRvsa-dglVif 139 (169)
+.+-|+.|+-. +|.++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 78888888754 444443
No 3
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=96.15 E-value=0.0016 Score=45.30 Aligned_cols=85 Identities=22% Similarity=0.199 Sum_probs=59.9
Q ss_pred hhhccCCCchhhhhhhhcccccccccccccCCchhhHHHHHHHHhcceeeeeecC---cccccCCceeEEEecccccccC
Q 038126 45 VRTGRDPETCSVVCKLLKEEDNEAWGVEPFDSDDADANRMSLVRKGIVQATDIKF---PLAFRAKSFSLAIVSDAVDYLS 121 (169)
Q Consensus 45 ~aLHvGPdTC~VVskLLkEe~tEAWGVEPyd~edad~~CksLVrKGiVRvADIkf---pLPYR~KSFSlViVSDalDyLs 121 (169)
+.|-+|+.+......| ++...+..|++|.+-.... ..+....| -.+...++|++|+.++.|.|+.
T Consensus 25 ~vLDiGcG~G~~~~~l-~~~~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 25 RVLDIGCGTGSFLRAL-AKRGFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp EEEEESSTTSHHHHHH-HHTTSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSS
T ss_pred EEEEEcCCCCHHHHHH-HHhCCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHHHhhcc
Confidence 4488899998655555 7777799999987533222 22222222 4456788999999999999998
Q ss_pred C--CCchhhhhccc-CceEEEec
Q 038126 122 P--KTLPELARVSA-DGVVIFAG 141 (169)
Q Consensus 122 p--kTLPeLaRvsa-dglVif~G 141 (169)
. ..|-++.|+-. +|+++|+-
T Consensus 93 d~~~~l~~l~~~LkpgG~l~~~~ 115 (161)
T PF13489_consen 93 DPEEFLKELSRLLKPGGYLVISD 115 (161)
T ss_dssp HHHHHHHHHHHCEEEEEEEEEEE
T ss_pred cHHHHHHHHHHhcCCCCEEEEEE
Confidence 6 78888888665 56666654
No 4
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=96.01 E-value=0.01 Score=45.01 Aligned_cols=92 Identities=24% Similarity=0.334 Sum_probs=62.8
Q ss_pred hhccCCCchhhhhhhhcccccccccccccCCchhhHHHHHHHHhcc-eeeeeecCcc-cccCCceeEEEecccccccCC-
Q 038126 46 RTGRDPETCSVVCKLLKEEDNEAWGVEPFDSDDADANRMSLVRKGI-VQATDIKFPL-AFRAKSFSLAIVSDAVDYLSP- 122 (169)
Q Consensus 46 aLHvGPdTC~VVskLLkEe~tEAWGVEPyd~edad~~CksLVrKGi-VRvADIkfpL-PYR~KSFSlViVSDalDyLsp- 122 (169)
.|.+|..+-.+...|.+.-...++|||+-+ +.-..++ ++|+ +..+|+.-.+ |+..++|++|+.+.++.|+..
T Consensus 17 iLDiGcG~G~~~~~l~~~~~~~~~giD~s~--~~i~~a~---~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~ 91 (194)
T TIGR02081 17 VLDLGCGDGELLALLRDEKQVRGYGIEIDQ--DGVLACV---ARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNP 91 (194)
T ss_pred EEEeCCCCCHHHHHHHhccCCcEEEEeCCH--HHHHHHH---HcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCH
Confidence 477888887776666555556778988643 1111221 2332 3457776445 477889999999999999965
Q ss_pred -CCchhhhhcccCceEEEecC
Q 038126 123 -KTLPELARVSADGVVIFAGY 142 (169)
Q Consensus 123 -kTLPeLaRvsadglVif~G~ 142 (169)
+.|-|+.|+...+++.|..+
T Consensus 92 ~~~l~e~~r~~~~~ii~~p~~ 112 (194)
T TIGR02081 92 EEILDEMLRVGRHAIVSFPNF 112 (194)
T ss_pred HHHHHHHHHhCCeEEEEcCCh
Confidence 78899999988776665443
No 5
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=95.29 E-value=0.029 Score=44.27 Aligned_cols=92 Identities=16% Similarity=0.164 Sum_probs=64.4
Q ss_pred hhccCCCchhhhhhhhcc-cccccccccccCCchhhHHHHHHHHhcceeeeeecCcccccCCceeEEEecccccccCC--
Q 038126 46 RTGRDPETCSVVCKLLKE-EDNEAWGVEPFDSDDADANRMSLVRKGIVQATDIKFPLAFRAKSFSLAIVSDAVDYLSP-- 122 (169)
Q Consensus 46 aLHvGPdTC~VVskLLkE-e~tEAWGVEPyd~edad~~CksLVrKGiVRvADIkfpLPYR~KSFSlViVSDalDyLsp-- 122 (169)
.|-+|-.|-.....|.+. ...+..|||+.+ ++-..++....+--+..+|+.- |+...+|.+|+....|.|++|
T Consensus 47 VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~--~~l~~A~~~~~~~~~~~~d~~~--~~~~~sfD~V~~~~vL~hl~p~~ 122 (204)
T TIGR03587 47 ILELGANIGMNLAALKRLLPFKHIYGVEINE--YAVEKAKAYLPNINIIQGSLFD--PFKDNFFDLVLTKGVLIHINPDN 122 (204)
T ss_pred EEEEecCCCHHHHHHHHhCCCCeEEEEECCH--HHHHHHHhhCCCCcEEEeeccC--CCCCCCEEEEEECChhhhCCHHH
Confidence 377787777777777665 467889987753 2222333322333456677755 788899999999999999987
Q ss_pred --CCchhhhhcccCceEEEecC
Q 038126 123 --KTLPELARVSADGVVIFAGY 142 (169)
Q Consensus 123 --kTLPeLaRvsadglVif~G~ 142 (169)
+.+-++.|++.. .|+++.+
T Consensus 123 ~~~~l~el~r~~~~-~v~i~e~ 143 (204)
T TIGR03587 123 LPTAYRELYRCSNR-YILIAEY 143 (204)
T ss_pred HHHHHHHHHhhcCc-EEEEEEe
Confidence 778899999854 5555553
No 6
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=93.75 E-value=0.1 Score=40.65 Aligned_cols=94 Identities=21% Similarity=0.167 Sum_probs=61.6
Q ss_pred hhccCCCchhhhhhhhcccccccccccccCCchhhHHHHHHHHhcceeeeeecCcccccCCceeEEEecccccccCC--C
Q 038126 46 RTGRDPETCSVVCKLLKEEDNEAWGVEPFDSDDADANRMSLVRKGIVQATDIKFPLAFRAKSFSLAIVSDAVDYLSP--K 123 (169)
Q Consensus 46 aLHvGPdTC~VVskLLkEe~tEAWGVEPyd~edad~~CksLVrKGiVRvADIkfpLPYR~KSFSlViVSDalDyLsp--k 123 (169)
.|.+|-.|-.+ +..|.+...+..|+++.. +.-..++.....--+..+|+.- +|+...+|.+|+.+.++.+... +
T Consensus 46 vLDiGcG~G~~-~~~l~~~~~~v~~~D~s~--~~l~~a~~~~~~~~~~~~d~~~-~~~~~~~fD~V~s~~~l~~~~d~~~ 121 (251)
T PRK10258 46 VLDAGCGPGWM-SRYWRERGSQVTALDLSP--PMLAQARQKDAADHYLAGDIES-LPLATATFDLAWSNLAVQWCGNLST 121 (251)
T ss_pred EEEeeCCCCHH-HHHHHHcCCeEEEEECCH--HHHHHHHhhCCCCCEEEcCccc-CcCCCCcEEEEEECchhhhcCCHHH
Confidence 47777777554 444444556778887643 2222233322222345678743 6787889999999999988765 8
Q ss_pred Cchhhhhccc-CceEEEecCC
Q 038126 124 TLPELARVSA-DGVVIFAGYP 143 (169)
Q Consensus 124 TLPeLaRvsa-dglVif~G~P 143 (169)
.|.++.|+-. +|+++|+.+.
T Consensus 122 ~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 122 ALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred HHHHHHHHcCCCeEEEEEeCC
Confidence 8999999765 5888887643
No 7
>PRK05785 hypothetical protein; Provisional
Probab=93.23 E-value=0.21 Score=39.74 Aligned_cols=95 Identities=19% Similarity=0.159 Sum_probs=63.1
Q ss_pred hhhccCCCchhhhhhhhcccccccccccccCCchhhHHHHHHHHhcceeeeeecCcccccCCceeEEEecccccccCC--
Q 038126 45 VRTGRDPETCSVVCKLLKEEDNEAWGVEPFDSDDADANRMSLVRKGIVQATDIKFPLAFRAKSFSLAIVSDAVDYLSP-- 122 (169)
Q Consensus 45 ~aLHvGPdTC~VVskLLkEe~tEAWGVEPyd~edad~~CksLVrKGiVRvADIkfpLPYR~KSFSlViVSDalDyLsp-- 122 (169)
+.|-+|-.|-.+...|.+.-+.+..||++-+ +.=..++ +|.-...+|.. .||+...||.+|+.+.+|.++..
T Consensus 54 ~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~--~Ml~~a~---~~~~~~~~d~~-~lp~~d~sfD~v~~~~~l~~~~d~~ 127 (226)
T PRK05785 54 KVLDVAAGKGELSYHFKKVFKYYVVALDYAE--NMLKMNL---VADDKVVGSFE-ALPFRDKSFDVVMSSFALHASDNIE 127 (226)
T ss_pred eEEEEcCCCCHHHHHHHHhcCCEEEEECCCH--HHHHHHH---hccceEEechh-hCCCCCCCEEEEEecChhhccCCHH
Confidence 4477777777665555444356888988732 1111111 12223345553 57899999999999999998866
Q ss_pred CCchhhhhcccCce-EEEecCCcc
Q 038126 123 KTLPELARVSADGV-VIFAGYPHQ 145 (169)
Q Consensus 123 kTLPeLaRvsadgl-Vif~G~Pgq 145 (169)
+.|-|+.||-...+ ++-.+.|..
T Consensus 128 ~~l~e~~RvLkp~~~ile~~~p~~ 151 (226)
T PRK05785 128 KVIAEFTRVSRKQVGFIAMGKPDN 151 (226)
T ss_pred HHHHHHHHHhcCceEEEEeCCCCc
Confidence 89999999998765 454566643
No 8
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=92.81 E-value=0.22 Score=36.91 Aligned_cols=95 Identities=21% Similarity=0.234 Sum_probs=59.2
Q ss_pred hhhccCCCchhhhhhhhccc-ccccccccccCCchhhHHHHHHHHhc-ceeeeeecCcccccCCceeEEEecccccccCC
Q 038126 45 VRTGRDPETCSVVCKLLKEE-DNEAWGVEPFDSDDADANRMSLVRKG-IVQATDIKFPLAFRAKSFSLAIVSDAVDYLSP 122 (169)
Q Consensus 45 ~aLHvGPdTC~VVskLLkEe-~tEAWGVEPyd~edad~~CksLVrKG-iVRvADIkfpLPYR~KSFSlViVSDalDyLsp 122 (169)
+.|.+|..+-.....|++.. .....|+++.. +.-..++...... .+-++|+. .+|+-..+|.+||.+..+.|+..
T Consensus 37 ~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 37 SVLDIGCGTGYLTRALLKRFPQAEFIALDISA--GMLAQAKTKLSENVQFICGDAE-KLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred eEEEECCCccHHHHHHHHhCCCCcEEEEeChH--HHHHHHHHhcCCCCeEEecchh-hCCCCCCceeEEEEhhhhhhccC
Confidence 34788888777666665543 23347777632 2222333222211 23446664 45666789999999999998855
Q ss_pred --CCchhhhhc-ccCceEEEecC
Q 038126 123 --KTLPELARV-SADGVVIFAGY 142 (169)
Q Consensus 123 --kTLPeLaRv-sadglVif~G~ 142 (169)
+.|.++.|+ ..+|.++|+.+
T Consensus 114 ~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 114 LSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeC
Confidence 778888875 55788888763
No 9
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=92.19 E-value=0.2 Score=38.37 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=58.7
Q ss_pred hhhccCCCchhhhhhhhcccccccccccccC--CchhhHHHHHHHHhcc-----eeeeeecCcccccCCceeEEEecccc
Q 038126 45 VRTGRDPETCSVVCKLLKEEDNEAWGVEPFD--SDDADANRMSLVRKGI-----VQATDIKFPLAFRAKSFSLAIVSDAV 117 (169)
Q Consensus 45 ~aLHvGPdTC~VVskLLkEe~tEAWGVEPyd--~edad~~CksLVrKGi-----VRvADIkfpLPYR~KSFSlViVSDal 117 (169)
+.|-+|-.+-.+...|.+. ..+..|||+-+ ++.+.. .+-..+. ..++|+... | ++|++|+.++.+
T Consensus 58 ~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~---~~~~~~~~~~i~~~~~d~~~~-~---~~fD~ii~~~~l 129 (219)
T TIGR02021 58 RVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARN---RAQGRDVAGNVEFEVNDLLSL-C---GEFDIVVCMDVL 129 (219)
T ss_pred EEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHH---HHHhcCCCCceEEEECChhhC-C---CCcCEEEEhhHH
Confidence 3477777777766666654 55788887642 222222 2222332 455676543 3 899999999999
Q ss_pred cccCC----CCchhhhhcccCceEEEecCCc
Q 038126 118 DYLSP----KTLPELARVSADGVVIFAGYPH 144 (169)
Q Consensus 118 DyLsp----kTLPeLaRvsadglVif~G~Pg 144 (169)
.|+++ +.+-++.|+...++++.....+
T Consensus 130 ~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~ 160 (219)
T TIGR02021 130 IHYPASDMAKALGHLASLTKERVIFTFAPKT 160 (219)
T ss_pred HhCCHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 99876 5667778877777766654333
No 10
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=91.71 E-value=0.078 Score=35.40 Aligned_cols=74 Identities=19% Similarity=0.136 Sum_probs=38.5
Q ss_pred hccCCCchhhhhhhhcc-cccccccccccC--CchhhHHHHHHHHhcc--eeeeeecCcccccCCceeEEEeccccccc
Q 038126 47 TGRDPETCSVVCKLLKE-EDNEAWGVEPFD--SDDADANRMSLVRKGI--VQATDIKFPLAFRAKSFSLAIVSDAVDYL 120 (169)
Q Consensus 47 LHvGPdTC~VVskLLkE-e~tEAWGVEPyd--~edad~~CksLVrKGi--VRvADIkfpLPYR~KSFSlViVSDalDyL 120 (169)
|-+|+.|-.....|+++ ...+..|+++.. ++.+...-+..-.... +++.+.....+.-.++|.+|+.+..|.|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 56889998888888877 677788887764 4445555444443332 33333333333333799999999999999
No 11
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=90.63 E-value=0.18 Score=39.92 Aligned_cols=92 Identities=11% Similarity=0.064 Sum_probs=60.7
Q ss_pred hhhccCCCchhhhhhhhcccccccccccccC--CchhhHHHHHHHHhcc-----eeeeeecCcccccCCceeEEEecccc
Q 038126 45 VRTGRDPETCSVVCKLLKEEDNEAWGVEPFD--SDDADANRMSLVRKGI-----VQATDIKFPLAFRAKSFSLAIVSDAV 117 (169)
Q Consensus 45 ~aLHvGPdTC~VVskLLkEe~tEAWGVEPyd--~edad~~CksLVrKGi-----VRvADIkfpLPYR~KSFSlViVSDal 117 (169)
+.|-+|-.+......|.+. ..+..|||+.+ ++-+..+++. .|+ +..+|+.--.|+-..+|++|+..+.|
T Consensus 47 ~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~---~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 47 RVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEA---KGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred EEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHh---cCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 4588888888776666654 67888988753 2223334332 343 33456543223446799999999999
Q ss_pred cccCC--CCchhhhhccc-CceEEEe
Q 038126 118 DYLSP--KTLPELARVSA-DGVVIFA 140 (169)
Q Consensus 118 DyLsp--kTLPeLaRvsa-dglVif~ 140 (169)
.|+.. +.|.++.|+-. +|+++++
T Consensus 123 ~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 123 EWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 99975 77889888755 5565544
No 12
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=87.75 E-value=2 Score=32.44 Aligned_cols=86 Identities=13% Similarity=0.149 Sum_probs=51.6
Q ss_pred hhccCCCchhhhhhhhcccccccccccccC--CchhhHHHHHHHHhcc---e--eeeeecCcccccCCceeEEEeccccc
Q 038126 46 RTGRDPETCSVVCKLLKEEDNEAWGVEPFD--SDDADANRMSLVRKGI---V--QATDIKFPLAFRAKSFSLAIVSDAVD 118 (169)
Q Consensus 46 aLHvGPdTC~VVskLLkEe~tEAWGVEPyd--~edad~~CksLVrKGi---V--RvADIkfpLPYR~KSFSlViVSDalD 118 (169)
.|-+|..+-.....|++. ..+..|+++-+ ++.+..+.. +.|+ + ..+| ++.-..+|.+|+.++++.
T Consensus 67 vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~---~~~~~~~i~~~~~d----~~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 67 ILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAP---EAGLAGNITFEVGD----LESLLGRFDTVVCLDVLI 138 (230)
T ss_pred EEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHH---hcCCccCcEEEEcC----chhccCCcCEEEEcchhh
Confidence 377787777766666654 34577776522 222333322 2222 2 3345 333468899999999998
Q ss_pred ccCC----CCchhhhhcccCceEEE
Q 038126 119 YLSP----KTLPELARVSADGVVIF 139 (169)
Q Consensus 119 yLsp----kTLPeLaRvsadglVif 139 (169)
+++. ..+-+|.|+...+++|.
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 8765 45566777766655443
No 13
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=87.50 E-value=0.77 Score=35.02 Aligned_cols=94 Identities=14% Similarity=0.108 Sum_probs=58.3
Q ss_pred hhccCCCchhhhhhhhcc--cccccccccccC--CchhhHHHHHHHHhc-ceeeeeecCcccccCCceeEEEeccccccc
Q 038126 46 RTGRDPETCSVVCKLLKE--EDNEAWGVEPFD--SDDADANRMSLVRKG-IVQATDIKFPLAFRAKSFSLAIVSDAVDYL 120 (169)
Q Consensus 46 aLHvGPdTC~VVskLLkE--e~tEAWGVEPyd--~edad~~CksLVrKG-iVRvADIkfpLPYR~KSFSlViVSDalDyL 120 (169)
.|-+|-.|......|.+. ...+..|+|+.+ ++-+..+.+..-... -+..+|+. .+|+...+|.+|+.+..+.++
T Consensus 49 vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~V~~~~~l~~~ 127 (231)
T TIGR02752 49 ALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAM-ELPFDDNSFDYVTIGFGLRNV 127 (231)
T ss_pred EEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechh-cCCCCCCCccEEEEecccccC
Confidence 477787888776666654 346789988753 222334433211111 12335552 356677899999999988887
Q ss_pred CC--CCchhhhhccc-CceEEEe
Q 038126 121 SP--KTLPELARVSA-DGVVIFA 140 (169)
Q Consensus 121 sp--kTLPeLaRvsa-dglVif~ 140 (169)
+. +.|-++.|+-. +|.+++.
T Consensus 128 ~~~~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 128 PDYMQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred CCHHHHHHHHHHHcCcCeEEEEE
Confidence 65 67778777644 5666653
No 14
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=86.95 E-value=2.2 Score=34.64 Aligned_cols=48 Identities=19% Similarity=0.170 Sum_probs=36.4
Q ss_pred eeeeecCcccccCCceeEEEecccccccCC--CCchhhhhcccC-ceEEEec
Q 038126 93 QATDIKFPLAFRAKSFSLAIVSDAVDYLSP--KTLPELARVSAD-GVVIFAG 141 (169)
Q Consensus 93 RvADIkfpLPYR~KSFSlViVSDalDyLsp--kTLPeLaRvsad-glVif~G 141 (169)
..+|+ ..||+...||.+|+.+.+|.++.. +.|-|+.|+-.. |.+++.-
T Consensus 132 ~~~d~-~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 132 IEGDA-TDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred EEccc-ccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence 44665 357888889999999999988854 788999998665 5555543
No 15
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=86.51 E-value=0.45 Score=38.63 Aligned_cols=92 Identities=17% Similarity=0.212 Sum_probs=56.9
Q ss_pred hccCCCchhhhhhhhcccccccccccccC--CchhhHHHHHHHHhccee--eeeecCcccccCCceeEEEecccccccCC
Q 038126 47 TGRDPETCSVVCKLLKEEDNEAWGVEPFD--SDDADANRMSLVRKGIVQ--ATDIKFPLAFRAKSFSLAIVSDAVDYLSP 122 (169)
Q Consensus 47 LHvGPdTC~VVskLLkEe~tEAWGVEPyd--~edad~~CksLVrKGiVR--vADIkfpLPYR~KSFSlViVSDalDyLsp 122 (169)
|.+|..+=.....|.+.-..+..|+++-+ ++.+..++.. ...|+ .+|+. .+||...+|.+|+..+++-++++
T Consensus 57 LDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~-~~~~~~~~FD~V~s~~~l~h~~~ 132 (263)
T PTZ00098 57 LDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDIL-KKDFPENTFDMIYSRDAILHLSY 132 (263)
T ss_pred EEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcc-cCCCCCCCeEEEEEhhhHHhCCH
Confidence 66666665444444443345677777632 2223333321 22333 45653 57788899999999999988864
Q ss_pred ----CCchhhhhc-ccCceEEEecC
Q 038126 123 ----KTLPELARV-SADGVVIFAGY 142 (169)
Q Consensus 123 ----kTLPeLaRv-sadglVif~G~ 142 (169)
+.|-++.|+ ..+|.++++.+
T Consensus 133 ~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 133 ADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 566677664 67888888865
No 16
>PRK08317 hypothetical protein; Provisional
Probab=85.54 E-value=0.77 Score=33.75 Aligned_cols=94 Identities=18% Similarity=0.189 Sum_probs=53.6
Q ss_pred hccCCCchhhhhhhhcc--cccccccccccCC--chhhHHHHHHHHhcceeeeeecCcccccCCceeEEEecccccccCC
Q 038126 47 TGRDPETCSVVCKLLKE--EDNEAWGVEPFDS--DDADANRMSLVRKGIVQATDIKFPLAFRAKSFSLAIVSDAVDYLSP 122 (169)
Q Consensus 47 LHvGPdTC~VVskLLkE--e~tEAWGVEPyd~--edad~~CksLVrKGiVRvADIkfpLPYR~KSFSlViVSDalDyLsp 122 (169)
|.+|..+-.....+.+. ...+..|+++-+- +.+..+....-.+--+..+|+. .+|+...+|.+|+...++.++..
T Consensus 24 LdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~~~~~~~ 102 (241)
T PRK08317 24 LDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD-GLPFPDGSFDAVRSDRVLQHLED 102 (241)
T ss_pred EEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc-cCCCCCCCceEEEEechhhccCC
Confidence 55666654443333332 2346777776431 2222221111122224445653 35667789999999999999866
Q ss_pred --CCchhhhhc-ccCceEEEec
Q 038126 123 --KTLPELARV-SADGVVIFAG 141 (169)
Q Consensus 123 --kTLPeLaRv-sadglVif~G 141 (169)
..+.++.++ ..+|.+++..
T Consensus 103 ~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 103 PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred HHHHHHHHHHHhcCCcEEEEEe
Confidence 677777765 4566666654
No 17
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=85.07 E-value=1.4 Score=32.53 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=53.4
Q ss_pred hccCCCchhhhhhhhcccc--cccccccccCCchhhHHHHHHHH---hcceeeeeecCcccccCCceeEEEecccccccC
Q 038126 47 TGRDPETCSVVCKLLKEED--NEAWGVEPFDSDDADANRMSLVR---KGIVQATDIKFPLAFRAKSFSLAIVSDAVDYLS 121 (169)
Q Consensus 47 LHvGPdTC~VVskLLkEe~--tEAWGVEPyd~edad~~CksLVr---KGiVRvADIkfpLPYR~KSFSlViVSDalDyLs 121 (169)
|.+|..+-.....+++.-. ....|+|+-+ +.-..|+.... +--+...|+. .+|+...+|++|+.+..+.++.
T Consensus 44 ldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~--~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~D~i~~~~~~~~~~ 120 (223)
T TIGR01934 44 LDVACGTGDLAIELAKSAPDRGKVTGVDFSS--EMLEVAKKKSELPLNIEFIQADAE-ALPFEDNSFDAVTIAFGLRNVT 120 (223)
T ss_pred EEeCCCCChhHHHHHHhcCCCceEEEEECCH--HHHHHHHHHhccCCCceEEecchh-cCCCCCCcEEEEEEeeeeCCcc
Confidence 6666666555555554433 2566766521 22233333221 1124455664 4667788999999988887665
Q ss_pred C--CCchhhhh-cccCceEEEecC
Q 038126 122 P--KTLPELAR-VSADGVVIFAGY 142 (169)
Q Consensus 122 p--kTLPeLaR-vsadglVif~G~ 142 (169)
. ..|-++.+ +..+|.+++.++
T Consensus 121 ~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 121 DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 4 33444444 466888888774
No 18
>PRK06202 hypothetical protein; Provisional
Probab=84.74 E-value=1.1 Score=34.78 Aligned_cols=92 Identities=14% Similarity=0.069 Sum_probs=54.1
Q ss_pred hhhccCCCchhhhhhhhcc---c--ccccccccccCCchhhHHHHHHHH-hc-ceeeeeecCcccccCCceeEEEecccc
Q 038126 45 VRTGRDPETCSVVCKLLKE---E--DNEAWGVEPFDSDDADANRMSLVR-KG-IVQATDIKFPLAFRAKSFSLAIVSDAV 117 (169)
Q Consensus 45 ~aLHvGPdTC~VVskLLkE---e--~tEAWGVEPyd~edad~~CksLVr-KG-iVRvADIkfpLPYR~KSFSlViVSDal 117 (169)
+.|-+|-.|-.+...|.+. . ..+..||++.+ ++-..++.... .+ -+++.|.. -+|....+|++|+.+.+|
T Consensus 63 ~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~~~~~-~l~~~~~~fD~V~~~~~l 139 (232)
T PRK06202 63 TLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP--RAVAFARANPRRPGVTFRQAVSD-ELVAEGERFDVVTSNHFL 139 (232)
T ss_pred EEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH--HHHHHHHhccccCCCeEEEEecc-cccccCCCccEEEECCee
Confidence 3466666665544444432 1 24788888754 22233333322 12 13344332 133456899999999999
Q ss_pred cccCC----CCchhhhhcccCceEEE
Q 038126 118 DYLSP----KTLPELARVSADGVVIF 139 (169)
Q Consensus 118 DyLsp----kTLPeLaRvsadglVif 139 (169)
.|+.+ +.|-|+.|+...+++|.
T Consensus 140 hh~~d~~~~~~l~~~~r~~~~~~~i~ 165 (232)
T PRK06202 140 HHLDDAEVVRLLADSAALARRLVLHN 165 (232)
T ss_pred ecCChHHHHHHHHHHHHhcCeeEEEe
Confidence 99987 57889999988555444
No 19
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=84.07 E-value=2 Score=33.20 Aligned_cols=91 Identities=13% Similarity=0.149 Sum_probs=54.8
Q ss_pred hhhhccCCCchhhhhhhhcccccccccccccCCchhhHHHHHHHHh-cc----eeeeeecCcccccCCceeEEEeccccc
Q 038126 44 RVRTGRDPETCSVVCKLLKEEDNEAWGVEPFDSDDADANRMSLVRK-GI----VQATDIKFPLAFRAKSFSLAIVSDAVD 118 (169)
Q Consensus 44 ~~aLHvGPdTC~VVskLLkEe~tEAWGVEPyd~edad~~CksLVrK-Gi----VRvADIkfpLPYR~KSFSlViVSDalD 118 (169)
.+.|-+|=.+-.....|.+ ...+..||++. +++-..++.+.++ |+ +.++|+. .+++ ..+|++|+.+.++-
T Consensus 32 ~~vLDiGcG~G~~a~~La~-~g~~V~gvD~S--~~~i~~a~~~~~~~~~~~v~~~~~d~~-~~~~-~~~fD~I~~~~~~~ 106 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAA-NGFDVTAWDKN--PMSIANLERIKAAENLDNLHTAVVDLN-NLTF-DGEYDFILSTVVLM 106 (197)
T ss_pred CcEEEECCCCCHHHHHHHH-CCCEEEEEeCC--HHHHHHHHHHHHHcCCCcceEEecChh-hCCc-CCCcCEEEEecchh
Confidence 3457777777665544554 45677777664 2344455555543 22 2456763 2344 46799999999999
Q ss_pred ccCCCCchh----hhh-cccCceEEE
Q 038126 119 YLSPKTLPE----LAR-VSADGVVIF 139 (169)
Q Consensus 119 yLspkTLPe----LaR-vsadglVif 139 (169)
|+++..++. ++| +..+|.+++
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 998755554 333 356787443
No 20
>PLN02244 tocopherol O-methyltransferase
Probab=84.00 E-value=2.3 Score=35.92 Aligned_cols=94 Identities=20% Similarity=0.204 Sum_probs=62.7
Q ss_pred hhhccCCCchhhhhhhhcccccccccccccCCchhhHHHHHHHHh-cc-----eeeeeecCcccccCCceeEEEeccccc
Q 038126 45 VRTGRDPETCSVVCKLLKEEDNEAWGVEPFDSDDADANRMSLVRK-GI-----VQATDIKFPLAFRAKSFSLAIVSDAVD 118 (169)
Q Consensus 45 ~aLHvGPdTC~VVskLLkEe~tEAWGVEPyd~edad~~CksLVrK-Gi-----VRvADIkfpLPYR~KSFSlViVSDalD 118 (169)
+.|-||-.+-.....|.+.-+.+.-||++.+ +.-..++.+.++ |+ +.++|+ ..+|+...+|++|+..+++.
T Consensus 121 ~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~--~~i~~a~~~~~~~g~~~~v~~~~~D~-~~~~~~~~~FD~V~s~~~~~ 197 (340)
T PLN02244 121 RIVDVGCGIGGSSRYLARKYGANVKGITLSP--VQAARANALAAAQGLSDKVSFQVADA-LNQPFEDGQFDLVWSMESGE 197 (340)
T ss_pred eEEEecCCCCHHHHHHHHhcCCEEEEEECCH--HHHHHHHHHHHhcCCCCceEEEEcCc-ccCCCCCCCccEEEECCchh
Confidence 3467777776666566554456777887543 222334444332 32 345676 45788889999999999999
Q ss_pred ccCC--CCchhhhhccc-CceEEEec
Q 038126 119 YLSP--KTLPELARVSA-DGVVIFAG 141 (169)
Q Consensus 119 yLsp--kTLPeLaRvsa-dglVif~G 141 (169)
++.. +.+-|+.|+-. +|.++++.
T Consensus 198 h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 198 HMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 9876 67889999866 56777654
No 21
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=83.45 E-value=1.1 Score=38.58 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=59.9
Q ss_pred hhccCCCchhhhhhhhcccccccccccccCCchhhHHHHHHH---Hhcceeeeeec-CcccccCCceeEEEecccccccC
Q 038126 46 RTGRDPETCSVVCKLLKEEDNEAWGVEPFDSDDADANRMSLV---RKGIVQATDIK-FPLAFRAKSFSLAIVSDAVDYLS 121 (169)
Q Consensus 46 aLHvGPdTC~VVskLLkEe~tEAWGVEPyd~edad~~CksLV---rKGiVRvADIk-fpLPYR~KSFSlViVSDalDyLs 121 (169)
.|-+|..+..+...|.+. ..+..|||+.+- -.+ .++.+- .+--+..+|+. ..+|+-..+|++|+.+.++.||+
T Consensus 41 vLDlGcG~G~~~~~la~~-~~~v~giD~s~~-~l~-~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~ 117 (475)
T PLN02336 41 VLELGAGIGRFTGELAKK-AGQVIALDFIES-VIK-KNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLS 117 (475)
T ss_pred EEEeCCCcCHHHHHHHhh-CCEEEEEeCCHH-HHH-HHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhCC
Confidence 477888888777766654 467888886431 121 122211 11123446663 34566678999999999999998
Q ss_pred C----CCchhhhhc-ccCceEEEec
Q 038126 122 P----KTLPELARV-SADGVVIFAG 141 (169)
Q Consensus 122 p----kTLPeLaRv-sadglVif~G 141 (169)
+ +.|-++.|+ ..+|+++|.-
T Consensus 118 ~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 118 DKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 6 456677885 5577777753
No 22
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=82.97 E-value=1.6 Score=34.12 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=60.2
Q ss_pred hhhhccCCCchhhhhhhhccc-ccccccccccCCchhhHHHHHHHHhcceeeeeecCcccccCCceeEEEecccccccCC
Q 038126 44 RVRTGRDPETCSVVCKLLKEE-DNEAWGVEPFDSDDADANRMSLVRKGIVQATDIKFPLAFRAKSFSLAIVSDAVDYLSP 122 (169)
Q Consensus 44 ~~aLHvGPdTC~VVskLLkEe-~tEAWGVEPyd~edad~~CksLVrKGiVRvADIkfpLPYR~KSFSlViVSDalDyLsp 122 (169)
++.|.+|-.+-.+...|.+.- ..+..||++.+ +.-..++....+--+..+|+.-..| ..+|.+|+.+.++.++..
T Consensus 33 ~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~--~~i~~a~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~~~l~~~~d 108 (258)
T PRK01683 33 RYVVDLGCGPGNSTELLVERWPAARITGIDSSP--AMLAEARSRLPDCQFVEADIASWQP--PQALDLIFANASLQWLPD 108 (258)
T ss_pred CEEEEEcccCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHhCCCCeEEECchhccCC--CCCccEEEEccChhhCCC
Confidence 356888888777765555442 46788998764 2222222222222355677753222 358999999999999865
Q ss_pred --CCchhhhhccc-CceEEEec
Q 038126 123 --KTLPELARVSA-DGVVIFAG 141 (169)
Q Consensus 123 --kTLPeLaRvsa-dglVif~G 141 (169)
+-|.++.|+-. .|.+++..
T Consensus 109 ~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 109 HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred HHHHHHHHHHhcCCCcEEEEEC
Confidence 67888888754 77777753
No 23
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=81.63 E-value=1.7 Score=32.34 Aligned_cols=96 Identities=17% Similarity=0.148 Sum_probs=52.5
Q ss_pred hhhccCCCchhhhhhhhccc--ccccccccccC--CchhhHHHHH--HHHhcceeeeeecCcccccCCceeEEEeccccc
Q 038126 45 VRTGRDPETCSVVCKLLKEE--DNEAWGVEPFD--SDDADANRMS--LVRKGIVQATDIKFPLAFRAKSFSLAIVSDAVD 118 (169)
Q Consensus 45 ~aLHvGPdTC~VVskLLkEe--~tEAWGVEPyd--~edad~~Cks--LVrKGiVRvADIkfpLPYR~KSFSlViVSDalD 118 (169)
+.|.+|..+=.....+++.- ..+..|+|+-+ ++.+..++.. +-..-.+...|+. .+|+...+|.+|+.+..+.
T Consensus 54 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~I~~~~~l~ 132 (239)
T PRK00216 54 KVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAE-ALPFPDNSFDAVTIAFGLR 132 (239)
T ss_pred eEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccc-cCCCCCCCccEEEEecccc
Confidence 34666655533333333322 36777877632 2333333322 1111123445553 3556667899999988887
Q ss_pred ccCC--CCchhhhh-cccCceEEEec
Q 038126 119 YLSP--KTLPELAR-VSADGVVIFAG 141 (169)
Q Consensus 119 yLsp--kTLPeLaR-vsadglVif~G 141 (169)
++.. ..|-++.+ +..+|.+++..
T Consensus 133 ~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 133 NVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 7765 44555544 46688888765
No 24
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=81.63 E-value=2.4 Score=32.19 Aligned_cols=93 Identities=12% Similarity=0.150 Sum_probs=55.7
Q ss_pred hhccCCCchhhhhhhhccc-ccccccccccCCchhhHHHHHHHH-hc-----ceeeeeecCcccccCCceeEEEeccccc
Q 038126 46 RTGRDPETCSVVCKLLKEE-DNEAWGVEPFDSDDADANRMSLVR-KG-----IVQATDIKFPLAFRAKSFSLAIVSDAVD 118 (169)
Q Consensus 46 aLHvGPdTC~VVskLLkEe-~tEAWGVEPyd~edad~~CksLVr-KG-----iVRvADIkfpLPYR~KSFSlViVSDalD 118 (169)
.|.+|..+......+.++- ..+..|+++- ++.-..++..++ .| -+...|+. ..|+ +.+|.+|+....+.
T Consensus 3 vLDiGcG~G~~~~~la~~~~~~~v~gid~s--~~~~~~a~~~~~~~gl~~~i~~~~~d~~-~~~~-~~~fD~I~~~~~l~ 78 (224)
T smart00828 3 VLDFGCGYGSDLIDLAERHPHLQLHGYTIS--PEQAEVGRERIRALGLQGRIRIFYRDSA-KDPF-PDTYDLVFGFEVIH 78 (224)
T ss_pred EEEECCCCCHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHhcCCCcceEEEecccc-cCCC-CCCCCEeehHHHHH
Confidence 4667777776666665543 3466777652 122223333322 23 23445662 2233 35899999999998
Q ss_pred ccCC--CCchhhhh-cccCceEEEecC
Q 038126 119 YLSP--KTLPELAR-VSADGVVIFAGY 142 (169)
Q Consensus 119 yLsp--kTLPeLaR-vsadglVif~G~ 142 (169)
++.. ..+-++.| +..+|.++++..
T Consensus 79 ~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 79 HIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred hCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 8865 55666666 577888888764
No 25
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=79.57 E-value=2.7 Score=36.14 Aligned_cols=92 Identities=13% Similarity=0.056 Sum_probs=58.4
Q ss_pred hccCCCchhhhhhhhcccccccccccccCCch--hhHHHHHHHHhcceee--eeecCcccccCCceeEEEecccccccCC
Q 038126 47 TGRDPETCSVVCKLLKEEDNEAWGVEPFDSDD--ADANRMSLVRKGIVQA--TDIKFPLAFRAKSFSLAIVSDAVDYLSP 122 (169)
Q Consensus 47 LHvGPdTC~VVskLLkEe~tEAWGVEPyd~ed--ad~~CksLVrKGiVRv--ADIkfpLPYR~KSFSlViVSDalDyLsp 122 (169)
|-||-.+-.....++++......||+|...-- +....+.+-..+.+.+ .|+. -+|.. .+|.+|+...+|.|+..
T Consensus 126 LDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie-~lp~~-~~FD~V~s~gvL~H~~d 203 (314)
T TIGR00452 126 LDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIE-QLHEL-YAFDTVFSMGVLYHRKS 203 (314)
T ss_pred EEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHH-HCCCC-CCcCEEEEcchhhccCC
Confidence 66777777777788877666799999987421 1222222112223322 2332 13332 48999999999999844
Q ss_pred --CCchhhhhc-ccCceEEEe
Q 038126 123 --KTLPELARV-SADGVVIFA 140 (169)
Q Consensus 123 --kTLPeLaRv-sadglVif~ 140 (169)
..|-++.|+ ..+|.+|+.
T Consensus 204 p~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 204 PLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred HHHHHHHHHHhcCCCCEEEEE
Confidence 788899885 456777765
No 26
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=79.34 E-value=2.5 Score=35.80 Aligned_cols=94 Identities=13% Similarity=0.081 Sum_probs=61.0
Q ss_pred hhccCCCchhhhhhhhcccccccccccccCCchhhHH--HHHHHHhcc--eeeeeecCcccccCCceeEEEecccccccC
Q 038126 46 RTGRDPETCSVVCKLLKEEDNEAWGVEPFDSDDADAN--RMSLVRKGI--VQATDIKFPLAFRAKSFSLAIVSDAVDYLS 121 (169)
Q Consensus 46 aLHvGPdTC~VVskLLkEe~tEAWGVEPyd~edad~~--CksLVrKGi--VRvADIkfpLPYR~KSFSlViVSDalDyLs 121 (169)
.|-||-.+=.....+++.....+.||+|....-...+ .+.+-...- +...|+. .+|+ ..+|++|+...+|.|+.
T Consensus 126 VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e-~lp~-~~~FD~V~s~~vl~H~~ 203 (322)
T PRK15068 126 VLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIE-QLPA-LKAFDTVFSMGVLYHRR 203 (322)
T ss_pred EEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHH-HCCC-cCCcCEEEECChhhccC
Confidence 3677777777777777776556999998765332221 111111111 2333442 4577 78999999999998876
Q ss_pred C--CCchhhhhc-ccCceEEEec
Q 038126 122 P--KTLPELARV-SADGVVIFAG 141 (169)
Q Consensus 122 p--kTLPeLaRv-sadglVif~G 141 (169)
. ..|-++.|+ ..+|.+||..
T Consensus 204 dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 204 SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred CHHHHHHHHHHhcCCCcEEEEEE
Confidence 4 677788876 5678888764
No 27
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=79.12 E-value=4.7 Score=31.08 Aligned_cols=109 Identities=13% Similarity=0.149 Sum_probs=61.8
Q ss_pred hhhccCCCchhhhhhhhcccccccccccccCCchhhHHHHHHHHh-cc---eeeeeecCcccccCCceeEEEeccccccc
Q 038126 45 VRTGRDPETCSVVCKLLKEEDNEAWGVEPFDSDDADANRMSLVRK-GI---VQATDIKFPLAFRAKSFSLAIVSDAVDYL 120 (169)
Q Consensus 45 ~aLHvGPdTC~VVskLLkEe~tEAWGVEPyd~edad~~CksLVrK-Gi---VRvADIkfpLPYR~KSFSlViVSDalDyL 120 (169)
+.|-+|-.+.....-|.+ ...+..|+++.+ ++-..++...++ |+ ..++|+. .+|+ .++|.+|+.+..+-++
T Consensus 33 ~vLDiGcG~G~~a~~la~-~g~~V~~iD~s~--~~l~~a~~~~~~~~~~v~~~~~d~~-~~~~-~~~fD~I~~~~~~~~~ 107 (195)
T TIGR00477 33 KTLDLGCGQGRNSLYLSL-AGYDVRAWDHNP--ASIASVLDMKARENLPLRTDAYDIN-AAAL-NEDYDFIFSTVVFMFL 107 (195)
T ss_pred cEEEeCCCCCHHHHHHHH-CCCeEEEEECCH--HHHHHHHHHHHHhCCCceeEeccch-hccc-cCCCCEEEEecccccC
Confidence 457778777776655554 345666665532 333444443332 32 2345664 2333 3689999999999998
Q ss_pred CC----CCchhhhh-cccCce-EEEec---------CCcchhhhhhhhhhcCC
Q 038126 121 SP----KTLPELAR-VSADGV-VIFAG---------YPHQQRAKVSELSKFGR 158 (169)
Q Consensus 121 sp----kTLPeLaR-vsadgl-Vif~G---------~Pgqqrakvaelskfgr 158 (169)
++ +.+-++.| +..+|. +|+.. .|.+.+.+-.||.+.-+
T Consensus 108 ~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~ 160 (195)
T TIGR00477 108 QAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA 160 (195)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC
Confidence 86 34445554 356776 34321 23344566666655443
No 28
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=79.07 E-value=1.8 Score=26.08 Aligned_cols=92 Identities=17% Similarity=0.094 Sum_probs=48.9
Q ss_pred hccCCCchhhhhhhhcccccccccccccCCchhhHHHHHHH-----HhcceeeeeecCcccccCCceeEEEecccccccC
Q 038126 47 TGRDPETCSVVCKLLKEEDNEAWGVEPFDSDDADANRMSLV-----RKGIVQATDIKFPLAFRAKSFSLAIVSDAVDYLS 121 (169)
Q Consensus 47 LHvGPdTC~VVskLLkEe~tEAWGVEPyd~edad~~CksLV-----rKGiVRvADIkfpLPYR~KSFSlViVSDalDyLs 121 (169)
+++|..+-.....+++....+.+|+|+-+. +-..++... .+--+...|+.-+.+....+|.+|+....+.++.
T Consensus 3 ldig~G~G~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 3 LDLGCGTGALALALASGPGARVTGVDISPV--ALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred EEEcCCccHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 456666656656666545667777775321 111222111 1222334555544444567899998888877742
Q ss_pred C---CCchhhhh-cccCceEEEe
Q 038126 122 P---KTLPELAR-VSADGVVIFA 140 (169)
Q Consensus 122 p---kTLPeLaR-vsadglVif~ 140 (169)
. ..+-.+.+ +..+|+++++
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 2 33333332 4567777765
No 29
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=77.93 E-value=4.8 Score=30.37 Aligned_cols=92 Identities=12% Similarity=0.160 Sum_probs=55.3
Q ss_pred hhhccCCCchhhhhhhhcccccccccccccC--CchhhHHHHHHHHhcc--eee--eeec-CcccccCCceeEEEecccc
Q 038126 45 VRTGRDPETCSVVCKLLKEEDNEAWGVEPFD--SDDADANRMSLVRKGI--VQA--TDIK-FPLAFRAKSFSLAIVSDAV 117 (169)
Q Consensus 45 ~aLHvGPdTC~VVskLLkEe~tEAWGVEPyd--~edad~~CksLVrKGi--VRv--ADIk-fpLPYR~KSFSlViVSDal 117 (169)
+.|.+|..+-.....+.+. ..+..|+|+-. ++.+.. .+.+.++ +++ +|+. ++.+. ..+|.+|+.++.+
T Consensus 48 ~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~---~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~i~~~~~l 122 (224)
T TIGR01983 48 RVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKL---HAKKDPLLKIEYRCTSVEDLAEKG-AKSFDVVTCMEVL 122 (224)
T ss_pred eEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHH---HHHHcCCCceEEEeCCHHHhhcCC-CCCccEEEehhHH
Confidence 3488888887766655553 34577777622 122222 2333444 443 3332 33333 4689999999999
Q ss_pred cccCC--CCchhhhhc-ccCceEEEec
Q 038126 118 DYLSP--KTLPELARV-SADGVVIFAG 141 (169)
Q Consensus 118 DyLsp--kTLPeLaRv-sadglVif~G 141 (169)
.+... ..|.++.++ ..+|.++++.
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 98866 566676664 5677777665
No 30
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=77.60 E-value=2.4 Score=34.78 Aligned_cols=62 Identities=27% Similarity=0.561 Sum_probs=38.4
Q ss_pred HHHHHHHhcceeeeeecCcccccCCce--eEEEecccccccCC---CCchhhhhcccCceEEEecCCcchhhh
Q 038126 82 NRMSLVRKGIVQATDIKFPLAFRAKSF--SLAIVSDAVDYLSP---KTLPELARVSADGVVIFAGYPHQQRAK 149 (169)
Q Consensus 82 ~CksLVrKGiVRvADIkfpLPYR~KSF--SlViVSDalDyLsp---kTLPeLaRvsadglVif~G~Pgqqrak 149 (169)
.=+.|+.+|.+.+.++.| .|-.|| ++||+-+| .-+|| |++ |.|+..+.=+||+|-|.|+-.+
T Consensus 95 ~~~~~~~~~~Ie~~~~~~---iRGrt~~~~~iIvDEa-QN~t~~~~k~i--lTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 95 KLEELIQNGKIEIEPLAF---IRGRTFDNAFIIVDEA-QNLTPEELKMI--LTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp CHHHHHHTTSEEEEEGGG---GTT--B-SEEEEE-SG-GG--HHHHHHH--HTTB-TT-EEEEEE--------
T ss_pred hHHHHhhcCeEEEEehhh---hcCccccceEEEEecc-cCCCHHHHHHH--HcccCCCcEEEEecCceeecCC
Confidence 446788999999998887 577888 78887665 55677 666 8999999999999999998655
No 31
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=77.46 E-value=2.1 Score=36.87 Aligned_cols=92 Identities=11% Similarity=0.103 Sum_probs=57.3
Q ss_pred hhhccCCCchhhhhhhhcccccccccccccCCchhhHHHHHHHHh-cc-----eeeeeecCcccccCCceeEEEeccccc
Q 038126 45 VRTGRDPETCSVVCKLLKEEDNEAWGVEPFDSDDADANRMSLVRK-GI-----VQATDIKFPLAFRAKSFSLAIVSDAVD 118 (169)
Q Consensus 45 ~aLHvGPdTC~VVskLLkEe~tEAWGVEPyd~edad~~CksLVrK-Gi-----VRvADIkfpLPYR~KSFSlViVSDalD 118 (169)
+.|-||-.+-.. +..|.+...+.+|||+.+- .-..++.-.+. ++ +..+|+. .||+...+|++|+..+.|.
T Consensus 134 ~ILDIGCG~G~~-s~~La~~g~~V~GID~s~~--~i~~Ar~~~~~~~~~~~i~~~~~dae-~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 134 KFIDIGCGGGLL-SEPLARMGATVTGVDAVDK--NVKIARLHADMDPVTSTIEYLCTTAE-KLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred EEEEeeCCCCHH-HHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhcCcccceeEEecCHH-HhhhccCCCCEEEEhhHHH
Confidence 446677666654 4445555678999988741 11122211111 11 2334432 3566678999999999999
Q ss_pred ccCC--CCchhhhhcc-cCceEEEe
Q 038126 119 YLSP--KTLPELARVS-ADGVVIFA 140 (169)
Q Consensus 119 yLsp--kTLPeLaRvs-adglVif~ 140 (169)
++.. ..|.+++|+- .+|.++++
T Consensus 210 Hv~d~~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 210 HVANPAEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred hcCCHHHHHHHHHHHcCCCcEEEEE
Confidence 9977 8888999875 55555554
No 32
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=76.44 E-value=4.8 Score=30.81 Aligned_cols=93 Identities=15% Similarity=0.128 Sum_probs=48.3
Q ss_pred hccCCCchhhhhhhhcccccccccccccCCchhhHHHHHH-HHhcc--e--eeeeecCcccccCCceeEEEecccccccC
Q 038126 47 TGRDPETCSVVCKLLKEEDNEAWGVEPFDSDDADANRMSL-VRKGI--V--QATDIKFPLAFRAKSFSLAIVSDAVDYLS 121 (169)
Q Consensus 47 LHvGPdTC~VVskLLkEe~tEAWGVEPyd~edad~~CksL-VrKGi--V--RvADIkfpLPYR~KSFSlViVSDalDyLs 121 (169)
|.+|..|-.... +|.+...+..|||.. ++.-..++.. -+-|+ | ...|..-++| ..++|.+|++.-+..++.
T Consensus 83 LeiG~GsG~~t~-~la~~~~~v~~vd~~--~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I~~~~~~~~~~ 158 (212)
T PRK00312 83 LEIGTGSGYQAA-VLAHLVRRVFSVERI--KTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP-AYAPFDRILVTAAAPEIP 158 (212)
T ss_pred EEECCCccHHHH-HHHHHhCEEEEEeCC--HHHHHHHHHHHHHCCCCceEEEECCcccCCC-cCCCcCEEEEccCchhhh
Confidence 677777765433 333333468888876 3333333322 23344 2 2334322232 136899999887766652
Q ss_pred CCCchhhhhcccCceEEEecC-Ccch
Q 038126 122 PKTLPELARVSADGVVIFAGY-PHQQ 146 (169)
Q Consensus 122 pkTLPeLaRvsadglVif~G~-Pgqq 146 (169)
+.+ +..+...|++++.=. .++|
T Consensus 159 -~~l--~~~L~~gG~lv~~~~~~~~~ 181 (212)
T PRK00312 159 -RAL--LEQLKEGGILVAPVGGEEQQ 181 (212)
T ss_pred -HHH--HHhcCCCcEEEEEEcCCCce
Confidence 222 234566787666443 3443
No 33
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=76.25 E-value=1.8 Score=33.19 Aligned_cols=97 Identities=10% Similarity=0.064 Sum_probs=51.5
Q ss_pred hhccCCCchhhhhhhhcccccccccccccC--CchhhHHHHHHHHhcceeeeeecCcccccCCceeEEEecccccccCC-
Q 038126 46 RTGRDPETCSVVCKLLKEEDNEAWGVEPFD--SDDADANRMSLVRKGIVQATDIKFPLAFRAKSFSLAIVSDAVDYLSP- 122 (169)
Q Consensus 46 aLHvGPdTC~VVskLLkEe~tEAWGVEPyd--~edad~~CksLVrKGiVRvADIkfpLPYR~KSFSlViVSDalDyLsp- 122 (169)
.|.+|..+=.....|.+ ...+.+|+|+-. ++.+..++.......-+...|+.--+......|.+||.+..+.++..
T Consensus 52 vLdiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~ 130 (233)
T PRK05134 52 VLDVGCGGGILSESMAR-LGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDP 130 (233)
T ss_pred EEEeCCCCCHHHHHHHH-cCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccCCH
Confidence 36777766444444444 345688887631 12222222211111112233333222234578999999999998754
Q ss_pred -CCchhhhhc-ccCceEEEecCC
Q 038126 123 -KTLPELARV-SADGVVIFAGYP 143 (169)
Q Consensus 123 -kTLPeLaRv-sadglVif~G~P 143 (169)
..|-.+.|+ ..+|.++|+...
T Consensus 131 ~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 131 ASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred HHHHHHHHHHcCCCcEEEEEecC
Confidence 344455544 557787777543
No 34
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=76.19 E-value=2.6 Score=36.31 Aligned_cols=94 Identities=9% Similarity=0.015 Sum_probs=59.5
Q ss_pred hhhccCCCchhhhhhhhcccccccccccccCCchhhHHHHHHHH----hcceeeeeecCcccccCCceeEEEeccccccc
Q 038126 45 VRTGRDPETCSVVCKLLKEEDNEAWGVEPFDSDDADANRMSLVR----KGIVQATDIKFPLAFRAKSFSLAIVSDAVDYL 120 (169)
Q Consensus 45 ~aLHvGPdTC~VVskLLkEe~tEAWGVEPyd~edad~~CksLVr----KGiVRvADIkfpLPYR~KSFSlViVSDalDyL 120 (169)
+.|-+|-.+-...-.|.++-..+..||++.+ ++-..++.-.. +--+..+|+. -+|+...+|.+|+..+++.|+
T Consensus 269 ~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~--~~l~~A~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~I~s~~~l~h~ 345 (475)
T PLN02336 269 KVLDVGCGIGGGDFYMAENFDVHVVGIDLSV--NMISFALERAIGRKCSVEFEVADCT-KKTYPDNSFDVIYSRDTILHI 345 (475)
T ss_pred EEEEEeccCCHHHHHHHHhcCCEEEEEECCH--HHHHHHHHHhhcCCCceEEEEcCcc-cCCCCCCCEEEEEECCccccc
Confidence 3466776665554455555566889998863 32222322211 1123456653 356667899999999999999
Q ss_pred CC--CCchhhhhcc-cCceEEEec
Q 038126 121 SP--KTLPELARVS-ADGVVIFAG 141 (169)
Q Consensus 121 sp--kTLPeLaRvs-adglVif~G 141 (169)
.. +.|.++.|+- .+|.++++-
T Consensus 346 ~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 346 QDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred CCHHHHHHHHHHHcCCCeEEEEEE
Confidence 65 7788888874 566666653
No 35
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=75.37 E-value=9.5 Score=30.70 Aligned_cols=90 Identities=19% Similarity=0.127 Sum_probs=55.8
Q ss_pred hccCCCchhhhhhhhccc----ccccccccccCCchhhHHHHHHHHhcceeeeeecCcccccCCceeEEEecccccccCC
Q 038126 47 TGRDPETCSVVCKLLKEE----DNEAWGVEPFDSDDADANRMSLVRKGIVQATDIKFPLAFRAKSFSLAIVSDAVDYLSP 122 (169)
Q Consensus 47 LHvGPdTC~VVskLLkEe----~tEAWGVEPyd~edad~~CksLVrKGiVRvADIkfpLPYR~KSFSlViVSDalDyLsp 122 (169)
|.+|-.|-.....|.+.- ..+..|+++.. ++=...+.-...--+.++|+. .||+...||++|+.. ++|
T Consensus 90 LDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~--~~l~~A~~~~~~~~~~~~d~~-~lp~~~~sfD~I~~~-----~~~ 161 (272)
T PRK11088 90 LDIGCGEGYYTHALADALPEITTMQLFGLDISK--VAIKYAAKRYPQVTFCVASSH-RLPFADQSLDAIIRI-----YAP 161 (272)
T ss_pred EEECCcCCHHHHHHHHhcccccCCeEEEECCCH--HHHHHHHHhCCCCeEEEeecc-cCCCcCCceeEEEEe-----cCC
Confidence 778888888766665432 12567887743 111111110111124677865 578888999999864 357
Q ss_pred CCchhhhhcc-cCceEEEecCCcc
Q 038126 123 KTLPELARVS-ADGVVIFAGYPHQ 145 (169)
Q Consensus 123 kTLPeLaRvs-adglVif~G~Pgq 145 (169)
..+.|+.|+= .+|.+|++. |++
T Consensus 162 ~~~~e~~rvLkpgG~li~~~-p~~ 184 (272)
T PRK11088 162 CKAEELARVVKPGGIVITVT-PGP 184 (272)
T ss_pred CCHHHHHhhccCCCEEEEEe-CCC
Confidence 8899999985 467777764 443
No 36
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=75.22 E-value=2.4 Score=35.67 Aligned_cols=48 Identities=23% Similarity=0.414 Sum_probs=30.6
Q ss_pred eeeeecCcccccCCceeEEEecccccccCC-CC----chhh-hhcccCceEEEecC
Q 038126 93 QATDIKFPLAFRAKSFSLAIVSDAVDYLSP-KT----LPEL-ARVSADGVVIFAGY 142 (169)
Q Consensus 93 RvADIkfpLPYR~KSFSlViVSDalDyLsp-kT----LPeL-aRvsadglVif~G~ 142 (169)
.++|+.- .+=...|.||++|..+-||++ .. +-.+ +.+..+|.+||.-.
T Consensus 94 ~~~dvp~--~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 94 IQADVPE--FWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp EES-TTT-----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECcCCC--CCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4455544 444789999999999999998 23 3333 34889999999653
No 37
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=71.20 E-value=4.5 Score=35.40 Aligned_cols=92 Identities=14% Similarity=0.137 Sum_probs=53.8
Q ss_pred hccCCCchhhhhhhhcc-cccccccccccCCchhhHHHHHHHH-hc-ceeeeeecCcccccCCceeEEEecccccccCC-
Q 038126 47 TGRDPETCSVVCKLLKE-EDNEAWGVEPFDSDDADANRMSLVR-KG-IVQATDIKFPLAFRAKSFSLAIVSDAVDYLSP- 122 (169)
Q Consensus 47 LHvGPdTC~VVskLLkE-e~tEAWGVEPyd~edad~~CksLVr-KG-iVRvADIkfpLPYR~KSFSlViVSDalDyLsp- 122 (169)
|.+|..|=.+...|.+. ...+..|+++-+ +.-...+.... ++ -+...|+. .+|+...+|++||.++++.|+..
T Consensus 118 LDLGcGtG~~~l~La~~~~~~~VtgVD~S~--~mL~~A~~k~~~~~i~~i~gD~e-~lp~~~~sFDvVIs~~~L~~~~d~ 194 (340)
T PLN02490 118 VDVGGGTGFTTLGIVKHVDAKNVTILDQSP--HQLAKAKQKEPLKECKIIEGDAE-DLPFPTDYADRYVSAGSIEYWPDP 194 (340)
T ss_pred EEEecCCcHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHhhhccCCeEEeccHH-hCCCCCCceeEEEEcChhhhCCCH
Confidence 55665553333333332 235677776532 11112222111 11 12345553 36777889999999999998766
Q ss_pred -CCchhhhhc-ccCceEEEec
Q 038126 123 -KTLPELARV-SADGVVIFAG 141 (169)
Q Consensus 123 -kTLPeLaRv-sadglVif~G 141 (169)
++|-|+.|+ ..+|.+++++
T Consensus 195 ~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 195 QRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred HHHHHHHHHhcCCCcEEEEEE
Confidence 788888886 5577877776
No 38
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=70.23 E-value=2.3 Score=28.71 Aligned_cols=58 Identities=22% Similarity=0.271 Sum_probs=36.8
Q ss_pred cccccccccCCchhhHHHHHHHH-hc---ceeeeeecCcccccCCceeEEEeccc-ccccCCCCch
Q 038126 66 NEAWGVEPFDSDDADANRMSLVR-KG---IVQATDIKFPLAFRAKSFSLAIVSDA-VDYLSPKTLP 126 (169)
Q Consensus 66 tEAWGVEPyd~edad~~CksLVr-KG---iVRvADIkfpLPYR~KSFSlViVSDa-lDyLspkTLP 126 (169)
...+||+.- +++=..++...+ .| -..++|+.. ||+...+|.+|+.+.. ++|++++.+.
T Consensus 25 ~~~~gvD~s--~~~l~~~~~~~~~~~~~~~~~~~D~~~-l~~~~~~~D~v~~~~~~~~~~~~~~~~ 87 (101)
T PF13649_consen 25 SRVIGVDIS--PEMLELAKKRFSEDGPKVRFVQADARD-LPFSDGKFDLVVCSGLSLHHLSPEELE 87 (101)
T ss_dssp SEEEEEES---HHHHHHHHHHSHHTTTTSEEEESCTTC-HHHHSSSEEEEEE-TTGGGGSSHHHHH
T ss_pred ceEEEEECC--HHHHHHHHHhchhcCCceEEEECCHhH-CcccCCCeeEEEEcCCccCCCCHHHHH
Confidence 666776532 123344555543 23 456788866 8888889999999766 9999964433
No 39
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=65.86 E-value=5.1 Score=30.07 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=37.5
Q ss_pred eeeeeecCcccccCCceeEEEecccccccCC--CCchhhhhcccCc-eEEE
Q 038126 92 VQATDIKFPLAFRAKSFSLAIVSDAVDYLSP--KTLPELARVSADG-VVIF 139 (169)
Q Consensus 92 VRvADIkfpLPYR~KSFSlViVSDalDyLsp--kTLPeLaRvsadg-lVif 139 (169)
+.++|+. .||+-..+|++|+.+..|.++.. +.|-|+.|+-..| .+++
T Consensus 30 ~~~~d~~-~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 30 WIEGDAI-DLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred EEEechh-hCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 4567875 68999999999999999988865 7889999987765 4443
No 40
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=64.05 E-value=4.9 Score=26.73 Aligned_cols=94 Identities=16% Similarity=0.112 Sum_probs=53.3
Q ss_pred hhccCCCchhhhhhhhc-ccccccccccccC--CchhhHHHHH--HHHhcceeeeeecCcccccCCceeEEEecc-cccc
Q 038126 46 RTGRDPETCSVVCKLLK-EEDNEAWGVEPFD--SDDADANRMS--LVRKGIVQATDIKFPLAFRAKSFSLAIVSD-AVDY 119 (169)
Q Consensus 46 aLHvGPdTC~VVskLLk-Ee~tEAWGVEPyd--~edad~~Cks--LVrKGiVRvADIkfpLPYR~KSFSlViVSD-alDy 119 (169)
.|.+|-.|=...-.|++ ....+..|||+.+ ++-+..+.+. +-.+=-+..+|+ ...+--...|.+|+.+. .++.
T Consensus 5 vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~~~~~~ 83 (112)
T PF12847_consen 5 VLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSGFTLHF 83 (112)
T ss_dssp EEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECSGSGGG
T ss_pred EEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECCCcccc
Confidence 36677777777777777 4778899998743 2223333311 111222456787 34444445599999999 5553
Q ss_pred cCC-----CCchhhh-hcccCceEEEe
Q 038126 120 LSP-----KTLPELA-RVSADGVVIFA 140 (169)
Q Consensus 120 Lsp-----kTLPeLa-RvsadglVif~ 140 (169)
+-+ +.|-.+. ++..+|+++++
T Consensus 84 ~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 84 LLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp CCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 332 2333343 34455655553
No 41
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=60.85 E-value=8.6 Score=30.76 Aligned_cols=103 Identities=16% Similarity=0.178 Sum_probs=52.6
Q ss_pred hccCCCchhhhhhhhcccccccccccccC--CchhhHHHHHHHHhcceeeeeecCcccccCCceeEEEecccccccCCCC
Q 038126 47 TGRDPETCSVVCKLLKEEDNEAWGVEPFD--SDDADANRMSLVRKGIVQATDIKFPLAFRAKSFSLAIVSDAVDYLSPKT 124 (169)
Q Consensus 47 LHvGPdTC~VVskLLkEe~tEAWGVEPyd--~edad~~CksLVrKGiVRvADIkfpLPYR~KSFSlViVSDalDyLspkT 124 (169)
|-+|-.|-.....+.+.......|++..+ ++-+..|+ -+.|+ . ..+. ++....+|++|+. +.+-..-.+.
T Consensus 124 LDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~---~~~~~-~-~~~~--~~~~~~~fD~Vva-ni~~~~~~~l 195 (250)
T PRK00517 124 LDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENA---ELNGV-E-LNVY--LPQGDLKADVIVA-NILANPLLEL 195 (250)
T ss_pred EEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH---HHcCC-C-ceEE--EccCCCCcCEEEE-cCcHHHHHHH
Confidence 66777774333333443334477775532 22233332 23343 1 1122 2222237998864 3332111256
Q ss_pred chhhhhc-ccCceEEEecCCcchhhhh-hhhhhcC
Q 038126 125 LPELARV-SADGVVIFAGYPHQQRAKV-SELSKFG 157 (169)
Q Consensus 125 LPeLaRv-sadglVif~G~Pgqqrakv-aelskfg 157 (169)
+|++.|+ ..+|.+|++|.-..+...+ +.+.+.|
T Consensus 196 ~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~G 230 (250)
T PRK00517 196 APDLARLLKPGGRLILSGILEEQADEVLEAYEEAG 230 (250)
T ss_pred HHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCC
Confidence 7887775 4589999999655554444 4455554
No 42
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=60.55 E-value=9 Score=31.26 Aligned_cols=90 Identities=10% Similarity=0.109 Sum_probs=54.5
Q ss_pred hhhccCCCchhhhhhhhcccccccccccccCCchhhHHHHHHHHh-cc---eeeeeecCcccccCCceeEEEeccccccc
Q 038126 45 VRTGRDPETCSVVCKLLKEEDNEAWGVEPFDSDDADANRMSLVRK-GI---VQATDIKFPLAFRAKSFSLAIVSDAVDYL 120 (169)
Q Consensus 45 ~aLHvGPdTC~VVskLLkEe~tEAWGVEPyd~edad~~CksLVrK-Gi---VRvADIkfpLPYR~KSFSlViVSDalDyL 120 (169)
+.|.+|=.+.....-|.+. ..+..||+.- +.+-..++...++ |+ +.+.|+.-+- . ..+|++|+.+..|-|+
T Consensus 123 ~vLDlGcG~G~~~~~la~~-g~~V~avD~s--~~ai~~~~~~~~~~~l~v~~~~~D~~~~~-~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALL-GFDVTAVDIN--QQSLENLQEIAEKENLNIRTGLYDINSAS-I-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CEEEeCCCCCHHHHHHHHC-CCEEEEEECC--HHHHHHHHHHHHHcCCceEEEEechhccc-c-cCCccEEEEcchhhhC
Confidence 3478888888766666654 4566666543 1233334443332 33 3345654322 2 6789999999999999
Q ss_pred CCCCchhhhh-----cccCceEEE
Q 038126 121 SPKTLPELAR-----VSADGVVIF 139 (169)
Q Consensus 121 spkTLPeLaR-----vsadglVif 139 (169)
++..+|++.+ +..+|++++
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 8866665543 356787544
No 43
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=59.47 E-value=8.5 Score=25.60 Aligned_cols=95 Identities=9% Similarity=0.065 Sum_probs=45.7
Q ss_pred hhccCCCchhhhhhhhcc-cccccccccccC--CchhhHHHHHHHHhc-ceeeeeecCcccccCCceeEEEecccccccC
Q 038126 46 RTGRDPETCSVVCKLLKE-EDNEAWGVEPFD--SDDADANRMSLVRKG-IVQATDIKFPLAFRAKSFSLAIVSDAVDYLS 121 (169)
Q Consensus 46 aLHvGPdTC~VVskLLkE-e~tEAWGVEPyd--~edad~~CksLVrKG-iVRvADIkfpLPYR~KSFSlViVSDalDyLs 121 (169)
.|-+|..+=.....|++. .+.+.+|+|+.+ ++-+..+.+.+--.. -+...|+...+++=.++|..|+.....+-+
T Consensus 23 vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~- 101 (124)
T TIGR02469 23 LWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGGLL- 101 (124)
T ss_pred EEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcchhH-
Confidence 455666554444445544 246788988743 222333433331111 112234332244434578888875433221
Q ss_pred CCCchhhhhc-ccCceEEEec
Q 038126 122 PKTLPELARV-SADGVVIFAG 141 (169)
Q Consensus 122 pkTLPeLaRv-sadglVif~G 141 (169)
++.+.++.|+ ..+|.++++.
T Consensus 102 ~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 102 QEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred HHHHHHHHHHcCCCCEEEEEe
Confidence 1445555554 3466666654
No 44
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=58.57 E-value=6.7 Score=35.25 Aligned_cols=58 Identities=31% Similarity=0.496 Sum_probs=41.4
Q ss_pred eEEEecccccccCC-----CCchhhhh-cccCceEEEecCCc--chh--hhhhhhhhcCCccccccCc
Q 038126 109 SLAIVSDAVDYLSP-----KTLPELAR-VSADGVVIFAGYPH--QQR--AKVSELSKFGRPAKLRSST 166 (169)
Q Consensus 109 SlViVSDalDyLsp-----kTLPeLaR-vsadglVif~G~Pg--qqr--akvaelskfgrpaK~rsss 166 (169)
.|+|||-..|+++. .+|--|++ +..+|.+|+||+|= |.. |++--=-+-|.|=-||-+|
T Consensus 211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRs 278 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRS 278 (311)
T ss_pred CEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecC
Confidence 69999999999998 56888888 88999999999874 332 2222112456666666543
No 45
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=57.92 E-value=40 Score=25.68 Aligned_cols=109 Identities=18% Similarity=0.188 Sum_probs=57.9
Q ss_pred hhhccCCCchhhhhhhhccc-ccccccccccCCchhhHHHHHHHH-hcc----eeeeeecCcccccCCceeEEEec----
Q 038126 45 VRTGRDPETCSVVCKLLKEE-DNEAWGVEPFDSDDADANRMSLVR-KGI----VQATDIKFPLAFRAKSFSLAIVS---- 114 (169)
Q Consensus 45 ~aLHvGPdTC~VVskLLkEe-~tEAWGVEPyd~edad~~CksLVr-KGi----VRvADIkfpLPYR~KSFSlViVS---- 114 (169)
+.|-+|..+-.....+.+.- .....|+|... ++-..++..++ .|+ +..+|+.-++ ...+|++||..
T Consensus 90 ~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~--~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 90 RVLDLGTGSGAIALALAKERPDARVTAVDISP--EALAVARKNAARLGLDNVTFLQSDWFEPL--PGGKFDLIVSNPPYI 165 (251)
T ss_pred eEEEEeCcHhHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCCeEEEEECchhccC--cCCceeEEEECCCCC
Confidence 45777888887777777652 44677887542 22223333222 232 3445653333 35789998761
Q ss_pred --ccccccCC----------------------CCchhhhhc-ccCceEEEecCCcchhhhhhhhhhcC
Q 038126 115 --DAVDYLSP----------------------KTLPELARV-SADGVVIFAGYPHQQRAKVSELSKFG 157 (169)
Q Consensus 115 --DalDyLsp----------------------kTLPeLaRv-sadglVif~G~Pgqqrakvaelskfg 157 (169)
..+..+.+ +-++++.|+ ...|.++|.-...|-..-.+.+.|.|
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~g 233 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAG 233 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCC
Confidence 12222222 113455555 66788777654555433344455544
No 46
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=57.22 E-value=5.7 Score=35.35 Aligned_cols=35 Identities=31% Similarity=0.569 Sum_probs=27.2
Q ss_pred CCceeEEEecccccccCC----CCchhhhhcccC-ceEEE
Q 038126 105 AKSFSLAIVSDAVDYLSP----KTLPELARVSAD-GVVIF 139 (169)
Q Consensus 105 ~KSFSlViVSDalDyLsp----kTLPeLaRvsad-glVif 139 (169)
+.||+.++.||+.|||+| ..+-+|.|+.+. |-|++
T Consensus 293 ~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~ 332 (380)
T PF11899_consen 293 PGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLW 332 (380)
T ss_pred CCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 689999999999999999 445566776654 55655
No 47
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=57.00 E-value=9.4 Score=30.39 Aligned_cols=91 Identities=10% Similarity=0.158 Sum_probs=55.6
Q ss_pred hhccCCCchhhhhhhhc---ccccccccccccCCchhhHHHHHHHHh-c---ce--eeeeecCcccccCCceeEEEeccc
Q 038126 46 RTGRDPETCSVVCKLLK---EEDNEAWGVEPFDSDDADANRMSLVRK-G---IV--QATDIKFPLAFRAKSFSLAIVSDA 116 (169)
Q Consensus 46 aLHvGPdTC~VVskLLk---Ee~tEAWGVEPyd~edad~~CksLVrK-G---iV--RvADIkfpLPYR~KSFSlViVSDa 116 (169)
.|.+|-.|=.....|++ ....+..|||+-+ +.-..++..+.+ | -| ..+|+. .+|+ .+|++|+.+-+
T Consensus 60 vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~--~ml~~A~~~~~~~~~~~~v~~~~~d~~-~~~~--~~~D~vv~~~~ 134 (247)
T PRK15451 60 VYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSP--AMIERCRRHIDAYKAPTPVDVIEGDIR-DIAI--ENASMVVLNFT 134 (247)
T ss_pred EEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEeCChh-hCCC--CCCCEEehhhH
Confidence 37777777665555554 3567889988743 222233333321 2 12 334442 2343 35899998889
Q ss_pred ccccCC----CCchhhhhc-ccCceEEEec
Q 038126 117 VDYLSP----KTLPELARV-SADGVVIFAG 141 (169)
Q Consensus 117 lDyLsp----kTLPeLaRv-sadglVif~G 141 (169)
|.+|.+ +.+.++.|+ ..+|.++++.
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999986 678888887 4567777765
No 48
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=55.65 E-value=12 Score=30.83 Aligned_cols=105 Identities=13% Similarity=0.080 Sum_probs=53.5
Q ss_pred hhccCCCchhhhhhhhcccccccccccccC--CchhhHHHHHHHHhcceeeeeecCcccccCCceeEEEecccccccCCC
Q 038126 46 RTGRDPETCSVVCKLLKEEDNEAWGVEPFD--SDDADANRMSLVRKGIVQATDIKFPLAFRAKSFSLAIVSDAVDYLSPK 123 (169)
Q Consensus 46 aLHvGPdTC~VVskLLkEe~tEAWGVEPyd--~edad~~CksLVrKGiVRvADIkfpLPYR~KSFSlViVSDalDyLspk 123 (169)
.|-+|-.|-.....+.+-......||+..+ ++-+..|++.---...+.+..-. .++.-..+|.+|+. +.+----.+
T Consensus 163 VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~-~~~~~~~~fDlVva-n~~~~~l~~ 240 (288)
T TIGR00406 163 VIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY-LEQPIEGKADVIVA-NILAEVIKE 240 (288)
T ss_pred EEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc-cccccCCCceEEEE-ecCHHHHHH
Confidence 366777775444344444444667776442 33344444321111112221111 23333568999875 433111125
Q ss_pred Cchhhhhc-ccCceEEEecCCcchhhhhhh
Q 038126 124 TLPELARV-SADGVVIFAGYPHQQRAKVSE 152 (169)
Q Consensus 124 TLPeLaRv-sadglVif~G~Pgqqrakvae 152 (169)
.++++.|+ ..+|.+|++|.-..|...+.+
T Consensus 241 ll~~~~~~LkpgG~li~sgi~~~~~~~v~~ 270 (288)
T TIGR00406 241 LYPQFSRLVKPGGWLILSGILETQAQSVCD 270 (288)
T ss_pred HHHHHHHHcCCCcEEEEEeCcHhHHHHHHH
Confidence 67777665 567899999976555555544
No 49
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=54.93 E-value=14 Score=27.79 Aligned_cols=107 Identities=12% Similarity=0.062 Sum_probs=56.2
Q ss_pred hhccCCCchhhhhhhhccc-ccccccccccC--CchhhHHHHHHHHhccee--eeeecCcccccCCceeEEEeccccccc
Q 038126 46 RTGRDPETCSVVCKLLKEE-DNEAWGVEPFD--SDDADANRMSLVRKGIVQ--ATDIKFPLAFRAKSFSLAIVSDAVDYL 120 (169)
Q Consensus 46 aLHvGPdTC~VVskLLkEe-~tEAWGVEPyd--~edad~~CksLVrKGiVR--vADIkfpLPYR~KSFSlViVSDalDyL 120 (169)
.|-+|..|-.+...+.+.- ..+..|+|+.. ++-+..|.+.+-. .-|+ ..|+..++ ..+|++|+......++
T Consensus 35 vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~~~---~~~~D~v~~~~~~~~~ 110 (187)
T PRK08287 35 LIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPIEL---PGKADAIFIGGSGGNL 110 (187)
T ss_pred EEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchhhc---CcCCCEEEECCCccCH
Confidence 3677777766665555543 35677887753 2334444433210 1133 34553333 2579999876554443
Q ss_pred CCCCchhhhh-cccCceEEEec-CCcchhhhhhhhhhcC
Q 038126 121 SPKTLPELAR-VSADGVVIFAG-YPHQQRAKVSELSKFG 157 (169)
Q Consensus 121 spkTLPeLaR-vsadglVif~G-~Pgqqrakvaelskfg 157 (169)
+..+.++.| +..+|.+++.. .+.+......-+.+.|
T Consensus 111 -~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g 148 (187)
T PRK08287 111 -TAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCG 148 (187)
T ss_pred -HHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCC
Confidence 234444433 45678877754 3344433344455555
No 50
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=54.59 E-value=8.9 Score=32.97 Aligned_cols=94 Identities=13% Similarity=0.062 Sum_probs=54.6
Q ss_pred hhhccCCCchhhhhhhhcccccccccccccC--CchhhHHHHHHHH------hcceeeeeecCcccccCCceeEEEeccc
Q 038126 45 VRTGRDPETCSVVCKLLKEEDNEAWGVEPFD--SDDADANRMSLVR------KGIVQATDIKFPLAFRAKSFSLAIVSDA 116 (169)
Q Consensus 45 ~aLHvGPdTC~VVskLLkEe~tEAWGVEPyd--~edad~~CksLVr------KGiVRvADIkfpLPYR~KSFSlViVSDa 116 (169)
+.|.+|=.|-.+--.|.+. ..+..|++..+ ++.+..+-+.+.. .--..+.|+.. -..+|++|+..|.
T Consensus 147 ~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~----l~~~fD~Vv~~~v 221 (315)
T PLN02585 147 TVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES----LSGKYDTVTCLDV 221 (315)
T ss_pred EEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh----cCCCcCEEEEcCE
Confidence 4577777777766666654 45677776554 3334444443311 11233456533 2578999999999
Q ss_pred ccccCC----CCchhhhhcccCceEEEecCCc
Q 038126 117 VDYLSP----KTLPELARVSADGVVIFAGYPH 144 (169)
Q Consensus 117 lDyLsp----kTLPeLaRvsadglVif~G~Pg 144 (169)
|-|+.. +-+-.|+++.. +.+|++-.|.
T Consensus 222 L~H~p~~~~~~ll~~l~~l~~-g~liIs~~p~ 252 (315)
T PLN02585 222 LIHYPQDKADGMIAHLASLAE-KRLIISFAPK 252 (315)
T ss_pred EEecCHHHHHHHHHHHHhhcC-CEEEEEeCCc
Confidence 988765 23445566654 4445543454
No 51
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=52.09 E-value=15 Score=31.72 Aligned_cols=105 Identities=15% Similarity=0.185 Sum_probs=74.3
Q ss_pred hccCCCchhhhhhhhcccccccccccccCCchhhHHHHHHHHhcceeeeeecCcccccCCceeEEEecccccccCC---C
Q 038126 47 TGRDPETCSVVCKLLKEEDNEAWGVEPFDSDDADANRMSLVRKGIVQATDIKFPLAFRAKSFSLAIVSDAVDYLSP---K 123 (169)
Q Consensus 47 LHvGPdTC~VVskLLkEe~tEAWGVEPyd~edad~~CksLVrKGiVRvADIkfpLPYR~KSFSlViVSDalDyLsp---k 123 (169)
|.-|++--++.+.+.--.+--+=++.||-+...+-|-++=. |-+.-+.--+=.-+.-|.++|++|.. |=.+ |
T Consensus 86 ~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang----v~i~~~~~d~~g~~~~~Dl~LagDlf-y~~~~a~~ 160 (218)
T COG3897 86 LGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG----VSILFTHADLIGSPPAFDLLLAGDLF-YNHTEADR 160 (218)
T ss_pred cccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc----ceeEEeeccccCCCcceeEEEeecee-cCchHHHH
Confidence 56677777777777665555566777888887777766543 33333333333366789999999975 3333 9
Q ss_pred CchhhhhcccCceEEEecCCcchhhhhhhhhhc
Q 038126 124 TLPELARVSADGVVIFAGYPHQQRAKVSELSKF 156 (169)
Q Consensus 124 TLPeLaRvsadglVif~G~Pgqqrakvaelskf 156 (169)
++|=+.|+.+.|..++.|-||-..--...|..|
T Consensus 161 l~~~~~~l~~~g~~vlvgdp~R~~lpk~~l~~~ 193 (218)
T COG3897 161 LIPWKDRLAEAGAAVLVGDPGRAYLPKKRLEFL 193 (218)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCchhhhhhh
Confidence 999999999999999999999765544555544
No 52
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=52.00 E-value=22 Score=27.68 Aligned_cols=90 Identities=12% Similarity=0.205 Sum_probs=55.0
Q ss_pred hccCCCchhhhhhhhc---ccccccccccccCCchhhHHHHHHHHh-c-----ceeeeeecCcccccCCceeEEEecccc
Q 038126 47 TGRDPETCSVVCKLLK---EEDNEAWGVEPFDSDDADANRMSLVRK-G-----IVQATDIKFPLAFRAKSFSLAIVSDAV 117 (169)
Q Consensus 47 LHvGPdTC~VVskLLk---Ee~tEAWGVEPyd~edad~~CksLVrK-G-----iVRvADIkfpLPYR~KSFSlViVSDal 117 (169)
|.+|-.|=.....|++ ..+.+..||++.+ +.-..|+..++. + -+...|+. -+|. ++|++|+.+.+|
T Consensus 58 LDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~--~ml~~a~~~~~~~~~~~~v~~~~~d~~-~~~~--~~~d~v~~~~~l 132 (239)
T TIGR00740 58 YDLGCSRGAATLSARRNINQPNVKIIGIDNSQ--PMVERCRQHIAAYHSEIPVEILCNDIR-HVEI--KNASMVILNFTL 132 (239)
T ss_pred EEecCCCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEECChh-hCCC--CCCCEEeeecch
Confidence 5555555444444444 3467788888753 333344443332 2 23445553 2333 358999999999
Q ss_pred cccCC----CCchhhhhc-ccCceEEEec
Q 038126 118 DYLSP----KTLPELARV-SADGVVIFAG 141 (169)
Q Consensus 118 DyLsp----kTLPeLaRv-sadglVif~G 141 (169)
.|+++ +.|.++.|+ ..+|.++++.
T Consensus 133 ~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 133 QFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 99986 577888886 4578887774
No 53
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=50.38 E-value=9.8 Score=27.45 Aligned_cols=96 Identities=18% Similarity=0.236 Sum_probs=62.8
Q ss_pred hhhccCCCchhhhhhhhcc--cccccccccccCCchhhHHHHHHHH-hcc----eeeeeecCccc--ccCCceeEEEecc
Q 038126 45 VRTGRDPETCSVVCKLLKE--EDNEAWGVEPFDSDDADANRMSLVR-KGI----VQATDIKFPLA--FRAKSFSLAIVSD 115 (169)
Q Consensus 45 ~aLHvGPdTC~VVskLLkE--e~tEAWGVEPyd~edad~~CksLVr-KGi----VRvADIkfpLP--YR~KSFSlViVSD 115 (169)
+.|.+|-.|-...-.|+++ ...+..||+.-+ ++=..++...+ .|+ +...|+.= || |. ..|++||...
T Consensus 6 ~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~--~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 6 KILDLGCGTGRLLIQLAKELNPGAKIIGVDISE--EMIEYAKKRAKELGLDNIEFIQGDIED-LPQELE-EKFDIIISNG 81 (152)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH--HHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSS-TTEEEEEEES
T ss_pred EEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH--HHHHHhhcccccccccccceEEeehhc-cccccC-CCeeEEEEcC
Confidence 3467777777777777743 256788887532 23333444332 343 34577766 76 66 9999999999
Q ss_pred cccccCC--CCchhhhhcccCceEEEecCCc
Q 038126 116 AVDYLSP--KTLPELARVSADGVVIFAGYPH 144 (169)
Q Consensus 116 alDyLsp--kTLPeLaRvsadglVif~G~Pg 144 (169)
++.++.. +.|-++.|+-.++-+++...+.
T Consensus 82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9988775 6778888887766555655554
No 54
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=49.82 E-value=13 Score=28.99 Aligned_cols=117 Identities=15% Similarity=0.068 Sum_probs=68.1
Q ss_pred hhhccCCCchhhhhhhhcc-cccccccccccC--CchhhHHHHHHH-Hhcceeeeee-c-CcccccCCceeEEEeccccc
Q 038126 45 VRTGRDPETCSVVCKLLKE-EDNEAWGVEPFD--SDDADANRMSLV-RKGIVQATDI-K-FPLAFRAKSFSLAIVSDAVD 118 (169)
Q Consensus 45 ~aLHvGPdTC~VVskLLkE-e~tEAWGVEPyd--~edad~~CksLV-rKGiVRvADI-k-fpLPYR~KSFSlViVSDalD 118 (169)
+.|-+|..|-.....|.+. .....+|||+.+ ++.+..+++..- ..--+..+|+ . ++..+...+|++|++.-...
T Consensus 43 ~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p 122 (202)
T PRK00121 43 IHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDP 122 (202)
T ss_pred eEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCCC
Confidence 3467777777666666553 346799999876 444555554321 1112455677 2 23226678899998643222
Q ss_pred ccC----------CCCchhhhhc-ccCceEEEec-CCcchhhhhhhhhhcCCccc
Q 038126 119 YLS----------PKTLPELARV-SADGVVIFAG-YPHQQRAKVSELSKFGRPAK 161 (169)
Q Consensus 119 yLs----------pkTLPeLaRv-sadglVif~G-~PgqqrakvaelskfgrpaK 161 (169)
+.. +..|-++.|+ ..+|+++|+- .+.+.+.-...+++.|....
T Consensus 123 ~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 123 WPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence 211 2346666654 4578888765 45555566666777775444
No 55
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=49.27 E-value=28 Score=28.35 Aligned_cols=99 Identities=22% Similarity=0.181 Sum_probs=49.9
Q ss_pred hhhccCCCchhhhhhhhccc-ccccccccccCCchhhHHHHHHHHh--cc-------eeeeeecCcccccCCceeEEEec
Q 038126 45 VRTGRDPETCSVVCKLLKEE-DNEAWGVEPFDSDDADANRMSLVRK--GI-------VQATDIKFPLAFRAKSFSLAIVS 114 (169)
Q Consensus 45 ~aLHvGPdTC~VVskLLkEe-~tEAWGVEPyd~edad~~CksLVrK--Gi-------VRvADIkfpLPYR~KSFSlViVS 114 (169)
+.|.+|..+..+...+++.. ..+.-+||.- +++-..|+....+ |. +.++|----|....+.|.+||+
T Consensus 75 ~VL~iG~G~G~~~~~ll~~~~~~~v~~veid--~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~- 151 (270)
T TIGR00417 75 HVLVIGGGDGGVLREVLKHKSVEKATLVDID--EKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV- 151 (270)
T ss_pred EEEEEcCCchHHHHHHHhCCCcceEEEEeCC--HHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE-
Confidence 33888999988888888754 2233344331 0122333332211 11 1223321112223578998764
Q ss_pred ccccccCC-CC------chhh-hhcccCceEEEec-CCcch
Q 038126 115 DAVDYLSP-KT------LPEL-ARVSADGVVIFAG-YPHQQ 146 (169)
Q Consensus 115 DalDyLsp-kT------LPeL-aRvsadglVif~G-~Pgqq 146 (169)
|.-+...| .. +-.+ .++..+|++++.. .|..+
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~ 192 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQ 192 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccC
Confidence 66554444 11 1122 4578899988864 45443
No 56
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=48.21 E-value=28 Score=27.46 Aligned_cols=89 Identities=7% Similarity=0.056 Sum_probs=55.5
Q ss_pred hhhccCCCchhhhhhhhccc-ccccccccccCCchhhHHHHHHHHhcc-eeeeeecCcccccCCceeEEEecccccccCC
Q 038126 45 VRTGRDPETCSVVCKLLKEE-DNEAWGVEPFDSDDADANRMSLVRKGI-VQATDIKFPLAFRAKSFSLAIVSDAVDYLSP 122 (169)
Q Consensus 45 ~aLHvGPdTC~VVskLLkEe-~tEAWGVEPyd~edad~~CksLVrKGi-VRvADIkfpLPYR~KSFSlViVSDalDyLsp 122 (169)
+.|-+|-.|-.+...|.+.- ..+..|+++-+ +.-..++ ++++ ++.+|+. .++. ..+|++|+.+.+|.++..
T Consensus 32 ~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~--~~~~~a~---~~~~~~~~~d~~-~~~~-~~~fD~v~~~~~l~~~~d 104 (255)
T PRK14103 32 RVVDLGCGPGNLTRYLARRWPGAVIEALDSSP--EMVAAAR---ERGVDARTGDVR-DWKP-KPDTDVVVSNAALQWVPE 104 (255)
T ss_pred EEEEEcCCCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHH---hcCCcEEEcChh-hCCC-CCCceEEEEehhhhhCCC
Confidence 34777777766655554431 45788998853 1111121 1232 4567764 3332 368999999999999865
Q ss_pred --CCchhhhhc-ccCceEEEe
Q 038126 123 --KTLPELARV-SADGVVIFA 140 (169)
Q Consensus 123 --kTLPeLaRv-sadglVif~ 140 (169)
+.|.++.|+ ..+|.++|.
T Consensus 105 ~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 105 HADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred HHHHHHHHHHhCCCCcEEEEE
Confidence 667777774 567777775
No 57
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=47.13 E-value=33 Score=27.16 Aligned_cols=93 Identities=15% Similarity=0.132 Sum_probs=51.2
Q ss_pred hccCCCchhhhhhhhc--ccccccccccccC--CchhhHHHHHHHHhcc----eeeeeecCcccccCCceeEEEeccccc
Q 038126 47 TGRDPETCSVVCKLLK--EEDNEAWGVEPFD--SDDADANRMSLVRKGI----VQATDIKFPLAFRAKSFSLAIVSDAVD 118 (169)
Q Consensus 47 LHvGPdTC~VVskLLk--Ee~tEAWGVEPyd--~edad~~CksLVrKGi----VRvADIkfpLPYR~KSFSlViVSDalD 118 (169)
|-+|..+-.....+.+ ....+.-||++-+ ++-+..+-. +.|+ +..+|+. .+|+-..+|.+||..-++.
T Consensus 82 LDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~---~~g~~~v~~~~~d~~-~l~~~~~~fD~Vi~~~v~~ 157 (272)
T PRK11873 82 LDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANAR---KAGYTNVEFRLGEIE-ALPVADNSVDVIISNCVIN 157 (272)
T ss_pred EEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHH---HcCCCCEEEEEcchh-hCCCCCCceeEEEEcCccc
Confidence 5566666322222222 2234677877643 233333222 2232 2346663 4666667999998776775
Q ss_pred ccCC--CCchhhhhcc-cCceEEEecCC
Q 038126 119 YLSP--KTLPELARVS-ADGVVIFAGYP 143 (169)
Q Consensus 119 yLsp--kTLPeLaRvs-adglVif~G~P 143 (169)
+... +.+.++.|+- .+|.+++++.+
T Consensus 158 ~~~d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 158 LSPDKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 5432 6788887754 57788887643
No 58
>PF08955 BofC_C: BofC C-terminal domain; InterPro: IPR015050 The C-terminal domain of the bacterial protein, bypass of forespore C (BofC), contains a three-stranded beta-sheet and three alpha-helices. The exact function is unknown []. ; PDB: 2BW2_A.
Probab=45.13 E-value=12 Score=27.32 Aligned_cols=16 Identities=38% Similarity=0.839 Sum_probs=13.3
Q ss_pred cccCc-eEEEecCCcch
Q 038126 131 VSADG-VVIFAGYPHQQ 146 (169)
Q Consensus 131 vsadg-lVif~G~Pgqq 146 (169)
+++|| |.+|-|-|++.
T Consensus 15 i~~dG~LslF~G~P~~~ 31 (75)
T PF08955_consen 15 ISEDGVLSLFEGPPGEE 31 (75)
T ss_dssp EETTTEEEEBSSS-STT
T ss_pred EcCCCcEEEEecCCCCC
Confidence 67899 89999999987
No 59
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=44.94 E-value=12 Score=30.65 Aligned_cols=48 Identities=19% Similarity=0.249 Sum_probs=36.3
Q ss_pred eeeecCcccccCCceeEEEecccccccCC----CCchhhhhcccCceEEEecC
Q 038126 94 ATDIKFPLAFRAKSFSLAIVSDAVDYLSP----KTLPELARVSADGVVIFAGY 142 (169)
Q Consensus 94 vADIkfpLPYR~KSFSlViVSDalDyLsp----kTLPeLaRvsadglVif~G~ 142 (169)
..|+-- +|+...+|.+|+..+.|-|+++ +.+.+++|+-..|=+++.|.
T Consensus 191 ~~dl~~-~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 191 KHNLLA-ESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred eccCCC-CCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 445543 3445678999999999999986 68889988877776666663
No 60
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=43.10 E-value=52 Score=24.49 Aligned_cols=69 Identities=12% Similarity=-0.094 Sum_probs=38.6
Q ss_pred hhhccCCCchhhhhhhhccccccccccccc--CCchhhHHHHHHHHhcceeeeeecCcccccCCceeEEEecccc
Q 038126 45 VRTGRDPETCSVVCKLLKEEDNEAWGVEPF--DSDDADANRMSLVRKGIVQATDIKFPLAFRAKSFSLAIVSDAV 117 (169)
Q Consensus 45 ~aLHvGPdTC~VVskLLkEe~tEAWGVEPy--d~edad~~CksLVrKGiVRvADIkfpLPYR~KSFSlViVSDal 117 (169)
+.|-+|..+..+...+.+... +..|+|.- -++-+..|++..-..--+..+|+-- .+ ..+|.+|+.....
T Consensus 22 ~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~--~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 22 DVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK-GV--RGKFDVILFNPPY 92 (179)
T ss_pred eEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc-cc--CCcccEEEECCCC
Confidence 347788888776666665543 77888743 2344556665332121223345421 22 3489999876543
No 61
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=42.08 E-value=31 Score=31.01 Aligned_cols=118 Identities=14% Similarity=0.106 Sum_probs=75.8
Q ss_pred hccCCCchhhhhhhhcccccccccccccCCchhhHH-HHHHHH-hcceeeeeec-CcccccCCceeEEEecccccccCC-
Q 038126 47 TGRDPETCSVVCKLLKEEDNEAWGVEPFDSDDADAN-RMSLVR-KGIVQATDIK-FPLAFRAKSFSLAIVSDAVDYLSP- 122 (169)
Q Consensus 47 LHvGPdTC~VVskLLkEe~tEAWGVEPyd~edad~~-CksLVr-KGiVRvADIk-fpLPYR~KSFSlViVSDalDyLsp- 122 (169)
|-||+..=+-.=+++.++-..+-|++|...--.+-. ++.++. +-.+..-.+- -.||- ..+|..|+.-=.|=|+..
T Consensus 120 LDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~P 198 (315)
T PF08003_consen 120 LDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSP 198 (315)
T ss_pred EEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehhccCCH
Confidence 888999888888999999999999999887654432 233332 2111111100 12355 789999999999988876
Q ss_pred -CCchhhhhc-ccCceEE-Eec-CCcchhhhhhhhhhcCCccccccCcccC
Q 038126 123 -KTLPELARV-SADGVVI-FAG-YPHQQRAKVSELSKFGRPAKLRSSTWWI 169 (169)
Q Consensus 123 -kTLPeLaRv-sadglVi-f~G-~PgqqrakvaelskfgrpaK~rsssWW~ 169 (169)
.+|-+|... -..|.+| -|- .+|..- .-|-=-+|-||||+ .||+
T Consensus 199 l~~L~~Lk~~L~~gGeLvLETlvi~g~~~---~~L~P~~rYa~m~n-v~Fi 245 (315)
T PF08003_consen 199 LDHLKQLKDSLRPGGELVLETLVIDGDEN---TVLVPEDRYAKMRN-VWFI 245 (315)
T ss_pred HHHHHHHHHhhCCCCEEEEEEeeecCCCc---eEEccCCcccCCCc-eEEe
Confidence 777788663 3344444 332 344331 22555689999997 5553
No 62
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=37.65 E-value=27 Score=29.46 Aligned_cols=77 Identities=23% Similarity=0.233 Sum_probs=51.6
Q ss_pred cccccccccC--CchhhHHHHHHHHhccee--eeeecCcccccCCceeEEEecccccccCC--CCchhhhhcccCce---
Q 038126 66 NEAWGVEPFD--SDDADANRMSLVRKGIVQ--ATDIKFPLAFRAKSFSLAIVSDAVDYLSP--KTLPELARVSADGV--- 136 (169)
Q Consensus 66 tEAWGVEPyd--~edad~~CksLVrKGiVR--vADIkfpLPYR~KSFSlViVSDalDyLsp--kTLPeLaRvsadgl--- 136 (169)
.+.+|+.+.+ ++-+-..++.+=-++ |+ ++|. .-|||.-+||++|.+|=.|..++- +-|-|+.||---|-
T Consensus 76 g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dA-e~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 76 GEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDA-ENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred ceEEEEECCHHHHHHHHHHhhccCccc-eEEEEech-hhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEE
Confidence 5667776543 333444443322222 22 4444 369999999999999999999987 89999999987654
Q ss_pred EEEecCCc
Q 038126 137 VIFAGYPH 144 (169)
Q Consensus 137 Vif~G~Pg 144 (169)
|+-.+.|.
T Consensus 154 vle~~~p~ 161 (238)
T COG2226 154 VLEFSKPD 161 (238)
T ss_pred EEEcCCCC
Confidence 55555554
No 63
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=36.34 E-value=13 Score=26.55 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=13.2
Q ss_pred ccccccccCCchhhHHHHHHH
Q 038126 67 EAWGVEPFDSDDADANRMSLV 87 (169)
Q Consensus 67 EAWGVEPyd~edad~~CksLV 87 (169)
=.|||.|+-+++.+.+...++
T Consensus 57 l~~GV~p~~~~~~~~~~~~~~ 77 (117)
T PF02887_consen 57 LYWGVYPVLIEEFDKDTEELI 77 (117)
T ss_dssp GSTTEEEEECSSHSHSHHHHH
T ss_pred cccceEEEEeccccccHHHHH
Confidence 369999976666553343333
No 64
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=36.24 E-value=30 Score=22.39 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHhcceeeeeecCcccccC
Q 038126 78 DADANRMSLVRKGIVQATDIKFPLAFRA 105 (169)
Q Consensus 78 dad~~CksLVrKGiVRvADIkfpLPYR~ 105 (169)
.+...-+.|+++|+|+...-+ |--|++
T Consensus 38 ~v~~~L~~L~~~GlV~~~~~~-~~~Y~a 64 (68)
T PF01978_consen 38 TVYRALKSLEEKGLVEREEGR-PKVYRA 64 (68)
T ss_dssp HHHHHHHHHHHTTSEEEEEEC-CEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEcCc-eEEEEE
Confidence 466778999999999998855 444444
No 65
>COG2126 RPL37A Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]
Probab=35.66 E-value=15 Score=26.57 Aligned_cols=13 Identities=54% Similarity=1.158 Sum_probs=11.6
Q ss_pred hcCCccccccCcc
Q 038126 155 KFGRPAKLRSSTW 167 (169)
Q Consensus 155 kfgrpaK~rsssW 167 (169)
=|||.+|||+-+|
T Consensus 38 Gfgrs~r~R~y~W 50 (61)
T COG2126 38 GFGRSARMRSYNW 50 (61)
T ss_pred CCCCccccccchh
Confidence 4899999999998
No 66
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=35.50 E-value=62 Score=25.13 Aligned_cols=87 Identities=21% Similarity=0.187 Sum_probs=52.4
Q ss_pred hhccCCCchhhh---hhhhcccccccccccccC--CchhhHHHHHHHHhcc-----eeeeeecCcccccCCceeEEEecc
Q 038126 46 RTGRDPETCSVV---CKLLKEEDNEAWGVEPFD--SDDADANRMSLVRKGI-----VQATDIKFPLAFRAKSFSLAIVSD 115 (169)
Q Consensus 46 aLHvGPdTC~VV---skLLkEe~tEAWGVEPyd--~edad~~CksLVrKGi-----VRvADIkfpLPYR~KSFSlViVSD 115 (169)
.|.+|-.|-... +++++ ...+..|+|..+ ++.+..|. -+.|+ +..+|..-.+|- .++|+.|++..
T Consensus 76 VLDiG~GsG~~~~~la~~~~-~~g~V~~iD~~~~~~~~a~~~l---~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~ 150 (205)
T PRK13944 76 ILEVGTGSGYQAAVCAEAIE-RRGKVYTVEIVKELAIYAAQNI---ERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVTA 150 (205)
T ss_pred EEEECcCccHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHH---HHcCCCCcEEEEECCcccCCcc-CCCccEEEEcc
Confidence 366777776644 44443 235788888763 22233333 33342 344677655553 46899999998
Q ss_pred cccccCCCCchhhhh-cccCceEEEec
Q 038126 116 AVDYLSPKTLPELAR-VSADGVVIFAG 141 (169)
Q Consensus 116 alDyLspkTLPeLaR-vsadglVif~G 141 (169)
++..+. +++.| +..+|.+++.-
T Consensus 151 ~~~~~~----~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 151 AASTIP----SALVRQLKDGGVLVIPV 173 (205)
T ss_pred Ccchhh----HHHHHhcCcCcEEEEEE
Confidence 887664 45544 67788877643
No 67
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=34.24 E-value=41 Score=27.43 Aligned_cols=98 Identities=19% Similarity=0.171 Sum_probs=48.2
Q ss_pred hccCCCchhhhhhhhcc--cccccccccccC--CchhhHHHHHHHHhcc-eeeeeecCcccccCCceeEEEecccccccC
Q 038126 47 TGRDPETCSVVCKLLKE--EDNEAWGVEPFD--SDDADANRMSLVRKGI-VQATDIKFPLAFRAKSFSLAIVSDAVDYLS 121 (169)
Q Consensus 47 LHvGPdTC~VVskLLkE--e~tEAWGVEPyd--~edad~~CksLVrKGi-VRvADIkfpLPYR~KSFSlViVSDalDyLs 121 (169)
|-+|-.|=.+...|.+. ...+.=|+++.+ ++-+..+.+..-..-+ ...+|. .-||++..||+.|..+=.|..+.
T Consensus 52 LDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da-~~lp~~d~sfD~v~~~fglrn~~ 130 (233)
T PF01209_consen 52 LDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDA-EDLPFPDNSFDAVTCSFGLRNFP 130 (233)
T ss_dssp EEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BT-TB--S-TT-EEEEEEES-GGG-S
T ss_pred EEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCH-HHhcCCCCceeEEEHHhhHHhhC
Confidence 55555554444445443 245666665543 2223333333221111 112333 35899999999999999998887
Q ss_pred C--CCchhhhhcccC-ceEEE--ecCCcc
Q 038126 122 P--KTLPELARVSAD-GVVIF--AGYPHQ 145 (169)
Q Consensus 122 p--kTLPeLaRvsad-glVif--~G~Pgq 145 (169)
. +.|.|+.||-.. |.+++ .+.|.+
T Consensus 131 d~~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 131 DRERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp SHHHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred CHHHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 6 899999998754 44333 345654
No 68
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=32.88 E-value=52 Score=24.61 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=48.8
Q ss_pred hhhhhhcccccccccccccCCchhhHHHHHHHHhcceeeeeecCcccccCCceeEEEecccccccCCCCchhhhhcccCc
Q 038126 56 VVCKLLKEEDNEAWGVEPFDSDDADANRMSLVRKGIVQATDIKFPLAFRAKSFSLAIVSDAVDYLSPKTLPELARVSADG 135 (169)
Q Consensus 56 VVskLLkEe~tEAWGVEPyd~edad~~CksLVrKGiVRvADIkfpLPYR~KSFSlViVSDalDyLspkTLPeLaRvsadg 135 (169)
++++.+.++.-.+...+-|.++---..+. --||++|=.-...++...+.++|+.|...+. .-+..+..+|
T Consensus 11 ila~a~~~~G~~v~~~~~ygs~~rGG~~~-----~~vris~~~~~~~~~~~~~Dilv~l~~~~~~-----~~~~~l~~~g 80 (173)
T PF01558_consen 11 ILARAAAREGYYVQSTPEYGSEIRGGPVV-----SHVRISDEPIIPSPPVGEADILVALDPEALE-----RHLKGLKPGG 80 (173)
T ss_dssp HHHHHHHHTTSEEEEEEEEESSSSSSCEE-----EEEEEESS--SSSS-TSSESEEEESSHHHHH-----HCGTTCETTE
T ss_pred HHHHHHHHcCCCEEEEeCCChhhcCCeEE-----EEEEEecCcCccCcccCCCCEEEEcCHHHHH-----HHhcCcCcCe
Confidence 55667777888888888888763222111 1367777213445555799999999864443 3455577889
Q ss_pred eEEEecC
Q 038126 136 VVIFAGY 142 (169)
Q Consensus 136 lVif~G~ 142 (169)
+||+-..
T Consensus 81 ~vi~ns~ 87 (173)
T PF01558_consen 81 VVIINSS 87 (173)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 9888764
No 69
>PRK00811 spermidine synthase; Provisional
Probab=32.68 E-value=78 Score=26.27 Aligned_cols=99 Identities=20% Similarity=0.146 Sum_probs=53.6
Q ss_pred hhhhccCCCchhhhhhhhccc-ccccccccccCCchhhHHHHHHHH---hcc-------eeeeeecCcccccCCceeEEE
Q 038126 44 RVRTGRDPETCSVVCKLLKEE-DNEAWGVEPFDSDDADANRMSLVR---KGI-------VQATDIKFPLAFRAKSFSLAI 112 (169)
Q Consensus 44 ~~aLHvGPdTC~VVskLLkEe-~tEAWGVEPyd~edad~~CksLVr---KGi-------VRvADIkfpLPYR~KSFSlVi 112 (169)
.+.|.+|-.+..+...+|+.. ..+.-+||.-. ++-..|+.... .|. +.+.|..--++-..++|.+||
T Consensus 78 ~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~--~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 78 KRVLIIGGGDGGTLREVLKHPSVEKITLVEIDE--RVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CEEEEEecCchHHHHHHHcCCCCCEEEEEeCCH--HHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 445889999999989898752 23444444321 12223333221 122 455665444444567899887
Q ss_pred ecccccccCC-CCc--hh-----hhhcccCceEEEe-cCCcc
Q 038126 113 VSDAVDYLSP-KTL--PE-----LARVSADGVVIFA-GYPHQ 145 (169)
Q Consensus 113 VSDalDyLsp-kTL--Pe-----LaRvsadglVif~-G~Pgq 145 (169)
+ |+-|-..| ..| .| ..++..+|++++- +.|..
T Consensus 156 ~-D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~ 196 (283)
T PRK00811 156 V-DSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFY 196 (283)
T ss_pred E-CCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCccc
Confidence 5 66443333 111 22 2456788887773 44543
No 70
>KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism]
Probab=32.10 E-value=16 Score=33.18 Aligned_cols=22 Identities=50% Similarity=0.480 Sum_probs=18.1
Q ss_pred cccCCCCchhhhhcccCceEEE
Q 038126 118 DYLSPKTLPELARVSADGVVIF 139 (169)
Q Consensus 118 DyLspkTLPeLaRvsadglVif 139 (169)
=|||++|+||+-|..+.-=+|-
T Consensus 74 lYLs~~ttPe~I~eAa~~~~ir 95 (344)
T KOG2902|consen 74 LYLSDKTTPEEIREAAESGVIR 95 (344)
T ss_pred EeecCCCCHHHHHHHHHhCcee
Confidence 4999999999999988764443
No 71
>KOG0829 consensus 60S ribosomal protein L18A [Translation, ribosomal structure and biogenesis]
Probab=31.97 E-value=18 Score=30.43 Aligned_cols=10 Identities=60% Similarity=1.089 Sum_probs=9.0
Q ss_pred eeecCccccc
Q 038126 95 TDIKFPLAFR 104 (169)
Q Consensus 95 ADIkfpLPYR 104 (169)
.+||||||.|
T Consensus 141 ~kikFPL~~r 150 (169)
T KOG0829|consen 141 SKIKFPLPHR 150 (169)
T ss_pred cCcccccccc
Confidence 5699999999
No 72
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=30.37 E-value=16 Score=28.74 Aligned_cols=52 Identities=13% Similarity=0.277 Sum_probs=29.3
Q ss_pred eeecCcccccCCceeEEE-ecccccccCCCCchhhhhcccCceEEEecCCcchhhhhh
Q 038126 95 TDIKFPLAFRAKSFSLAI-VSDAVDYLSPKTLPELARVSADGVVIFAGYPHQQRAKVS 151 (169)
Q Consensus 95 ADIkfpLPYR~KSFSlVi-VSDalDyLspkTLPeLaRvsadglVif~G~Pgqqrakva 151 (169)
.|+-+.-.|||++|+=++ =+++++-|.. +.+-.....++|+|-||-=|.-.+
T Consensus 3 ~~~~w~~kyrP~~~~~~~g~~~~~~~l~~-----~i~~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 3 MEEIWVEKYRPRTLDEIVGQEEIVERLKS-----YVKEKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred ccCccchhhCCCcHHHhcCcHHHHHHHHH-----HHhCCCCCeEEEECCCCCCHHHHH
Confidence 355566789999998544 3333333321 111111123799999998775444
No 73
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=30.33 E-value=32 Score=29.62 Aligned_cols=88 Identities=14% Similarity=0.056 Sum_probs=53.7
Q ss_pred cccccccc--ccCCchhhHHHHHHH-HhcceeeeeecCcccccCCceeEEEecc-cccccCCCCchhhhhcccCceEEEe
Q 038126 65 DNEAWGVE--PFDSDDADANRMSLV-RKGIVQATDIKFPLAFRAKSFSLAIVSD-AVDYLSPKTLPELARVSADGVVIFA 140 (169)
Q Consensus 65 ~tEAWGVE--Pyd~edad~~CksLV-rKGiVRvADIkfpLPYR~KSFSlViVSD-alDyLspkTLPeLaRvsadglVif~ 140 (169)
..+.+||| |--++++..|.+.+= .+--+..+|+.-.++-..++|.+||+ | --.=+.++.+..|++...+++|..+
T Consensus 255 ~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~-DPPr~G~~~~~l~~l~~~~p~~ivyvs 333 (374)
T TIGR02085 255 DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLV-NPPRRGIGKELCDYLSQMAPKFILYSS 333 (374)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEE-CCCCCCCcHHHHHHHHhcCCCeEEEEE
Confidence 46788988 556777777765541 11124556664334433356887665 4 1111122566778888889999999
Q ss_pred cCCcchhhhhhhh
Q 038126 141 GYPHQQRAKVSEL 153 (169)
Q Consensus 141 G~Pgqqrakvael 153 (169)
-.|..+-.-++.|
T Consensus 334 c~p~TlaRDl~~L 346 (374)
T TIGR02085 334 CNAQTMAKDIAEL 346 (374)
T ss_pred eCHHHHHHHHHHh
Confidence 9999885555555
No 74
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=29.13 E-value=40 Score=21.37 Aligned_cols=21 Identities=24% Similarity=0.613 Sum_probs=15.9
Q ss_pred eEEEecCCcchhhhhhhhhhc
Q 038126 136 VVIFAGYPHQQRAKVSELSKF 156 (169)
Q Consensus 136 lVif~G~Pgqqrakvaelskf 156 (169)
+|-|+|+++.+|..+.++-..
T Consensus 2 ~i~~sg~~~~~~~~l~~~i~~ 22 (63)
T PF12738_consen 2 VICFSGFSGKERSQLRKLIEA 22 (63)
T ss_dssp EEEEEEB-TTTCCHHHHHHHC
T ss_pred EEEECCCCHHHHHHHHHHHHH
Confidence 578999999999888876543
No 75
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=28.55 E-value=70 Score=28.07 Aligned_cols=80 Identities=13% Similarity=0.080 Sum_probs=42.0
Q ss_pred hccCCCchhhhhhhhcccccccccccccCCchhhHHHHHHHHhcc-eeeeeecCc-ccccCCceeEEEecccccccCCCC
Q 038126 47 TGRDPETCSVVCKLLKEEDNEAWGVEPFDSDDADANRMSLVRKGI-VQATDIKFP-LAFRAKSFSLAIVSDAVDYLSPKT 124 (169)
Q Consensus 47 LHvGPdTC~VVskLLkEe~tEAWGVEPyd~edad~~CksLVrKGi-VRvADIkfp-LPYR~KSFSlViVSDalDyLspkT 124 (169)
+++|-.-.+ ++++|+....+..|.+..+ ....-+.|...|+ +++..-.+. -.. ..+.+||+|-++.--.+.+
T Consensus 13 ~G~G~sG~s-~a~~L~~~G~~v~~~D~~~---~~~~~~~L~~~~~~~~~~~g~~~~~~~--~~~d~vv~sp~I~~~~~~~ 86 (498)
T PRK02006 13 LGLGESGLA-MARWCARHGARLRVADTRE---APPNLAALRAELPDAEFVGGPFDPALL--DGVDLVALSPGLSPLEAAL 86 (498)
T ss_pred EeecHhHHH-HHHHHHHCCCEEEEEcCCC---CchhHHHHHhhcCCcEEEeCCCchhHh--cCCCEEEECCCCCCccccc
Confidence 455555556 7777877777766655433 2222234555542 344332221 112 2689999999875433223
Q ss_pred chhhhhcc
Q 038126 125 LPELARVS 132 (169)
Q Consensus 125 LPeLaRvs 132 (169)
-|++.+..
T Consensus 87 ~~~~~~a~ 94 (498)
T PRK02006 87 APLVAAAR 94 (498)
T ss_pred CHHHHHHH
Confidence 35554433
No 76
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=27.78 E-value=71 Score=20.52 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=25.8
Q ss_pred cCCchhhHHHHHHHHhcceeeeeecCcccccCCcee
Q 038126 74 FDSDDADANRMSLVRKGIVQATDIKFPLAFRAKSFS 109 (169)
Q Consensus 74 yd~edad~~CksLVrKGiVRvADIkfpLPYR~KSFS 109 (169)
|.++|.++-.+.|.+.|+--+.++.- -||..++|-
T Consensus 62 ~~v~dv~~~~~~l~~~G~~~~~~~~~-~~~g~~~~~ 96 (108)
T PF12681_consen 62 FEVEDVDALYERLKELGAEIVTEPRD-DPWGQRSFY 96 (108)
T ss_dssp EEESHHHHHHHHHHHTTSEEEEEEEE-ETTSEEEEE
T ss_pred EEEcCHHHHHHHHHHCCCeEeeCCEE-cCCCeEEEE
Confidence 45599999999999999666666654 566555554
No 77
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=26.64 E-value=73 Score=21.39 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=23.0
Q ss_pred cCCchhhHHHHHHHHhcceeeeeecCcccccCCce
Q 038126 74 FDSDDADANRMSLVRKGIVQATDIKFPLAFRAKSF 108 (169)
Q Consensus 74 yd~edad~~CksLVrKGiVRvADIkfpLPYR~KSF 108 (169)
+..+|.|+-+..|..+|.+.+..--...||-.++|
T Consensus 70 ~~v~dvd~~~~~l~~~g~~~~~~~~~~~~~g~r~~ 104 (120)
T cd09011 70 FEEEDFDAFLDKLKRYDNIEYVHPIKEHPWGQRVV 104 (120)
T ss_pred EEehhhHHHHHHHHhcCCcEEecCcccCCCccEEE
Confidence 36689999999999998654432223455654444
No 78
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=26.38 E-value=60 Score=24.15 Aligned_cols=37 Identities=11% Similarity=0.273 Sum_probs=31.0
Q ss_pred cCCCchhhhhhhhcccccccccccccCCchhhHHHHHHHHhcceeeee
Q 038126 49 RDPETCSVVCKLLKEEDNEAWGVEPFDSDDADANRMSLVRKGIVQATD 96 (169)
Q Consensus 49 vGPdTC~VVskLLkEe~tEAWGVEPyd~edad~~CksLVrKGiVRvAD 96 (169)
.|||.=..+++.+ -.+++++..-|+.|.+.|+|.=-+
T Consensus 19 ~~~Dy~k~ia~~l-----------~~~~~~v~~~l~~Le~~GLler~~ 55 (92)
T PF10007_consen 19 AGPDYAKSIARRL-----------KIPLEEVREALEKLEEMGLLERVE 55 (92)
T ss_pred HCCCcHHHHHHHH-----------CCCHHHHHHHHHHHHHCCCeEEec
Confidence 5999998888877 367889999999999999986433
No 79
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=25.84 E-value=73 Score=28.50 Aligned_cols=86 Identities=17% Similarity=0.305 Sum_probs=62.0
Q ss_pred CCCchhhhhhhhcccccccccccccCCchhhHHHHHHHHhcceeeeeecCcccccCCceeEEEecccccccCC-CCchhh
Q 038126 50 DPETCSVVCKLLKEEDNEAWGVEPFDSDDADANRMSLVRKGIVQATDIKFPLAFRAKSFSLAIVSDAVDYLSP-KTLPEL 128 (169)
Q Consensus 50 GPdTC~VVskLLkEe~tEAWGVEPyd~edad~~CksLVrKGiVRvADIkfpLPYR~KSFSlViVSDalDyLsp-kTLPeL 128 (169)
-|+.|.|..++-.. ...-|+-+.+ ++. ..-+|-.+-|+...+ -|||| |+|+-+.+.++.=+| ++.-.+
T Consensus 5 ~~~~~~~~~~~~~~--i~iG~if~~~-~~~----~~af~~Av~~~N~~~-~l~~~---~~L~~~~~~~~~~dsf~~~~~v 73 (382)
T cd06377 5 HPQPCQVLARIGHT--VRLGALLVRA-PAP----RDRVLAALARANRAP-LLPYN---LSLEVVAAAAPSRDPASLLRSV 73 (382)
T ss_pred CCCCCchhhhcCCc--eeeeEEecCC-chH----HHHHHHHHHHhcccc-ccccC---ceeEEeEEEcCCCChHHHHHHH
Confidence 48889888876433 5666666655 332 333566666776653 57777 899999999999888 777777
Q ss_pred hhc-ccCceEEEecCCcch
Q 038126 129 ARV-SADGVVIFAGYPHQQ 146 (169)
Q Consensus 129 aRv-sadglVif~G~Pgqq 146 (169)
-+. -+.||+..-|+|...
T Consensus 74 C~~ll~~GV~AIfg~p~s~ 92 (382)
T cd06377 74 CQTVVVQGVSALLAFPQTR 92 (382)
T ss_pred HHhHhhCCeEEEEecCCCH
Confidence 777 588999999976654
No 80
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=25.62 E-value=1.6e+02 Score=22.92 Aligned_cols=67 Identities=19% Similarity=0.087 Sum_probs=37.4
Q ss_pred hhhccCCCchhhhhhhhccc-ccccccccccC--CchhhHHHHHHH-HhcceeeeeecCcccccCCceeEEEe
Q 038126 45 VRTGRDPETCSVVCKLLKEE-DNEAWGVEPFD--SDDADANRMSLV-RKGIVQATDIKFPLAFRAKSFSLAIV 113 (169)
Q Consensus 45 ~aLHvGPdTC~VVskLLkEe-~tEAWGVEPyd--~edad~~CksLV-rKGiVRvADIkfpLPYR~KSFSlViV 113 (169)
+.|.+|..+-.+...|.+.- ..+..|+|..+ ++-+..|.+... ..--+..+|+.-+++ ..+|.+||.
T Consensus 111 ~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~ 181 (275)
T PRK09328 111 RVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVS 181 (275)
T ss_pred EEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEE
Confidence 34777887776666665543 46677777543 234444444111 112234456644444 578999876
No 81
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=25.46 E-value=67 Score=22.18 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=16.8
Q ss_pred hhhhcccCceEEEecCCcchhhhh
Q 038126 127 ELARVSADGVVIFAGYPHQQRAKV 150 (169)
Q Consensus 127 eLaRvsadglVif~G~Pgqqrakv 150 (169)
++..++.+.+||+.+++|+.+.-+
T Consensus 41 ~~~~~~~~d~vi~iS~sG~t~~~~ 64 (128)
T cd05014 41 DLGMVTPGDVVIAISNSGETDELL 64 (128)
T ss_pred ccCcCCCCCEEEEEeCCCCCHHHH
Confidence 345567788888888888775443
No 82
>PF03815 LCCL: LCCL domain; InterPro: IPR004043 The LCCL domain has been named after the best characterised proteins that were found to contain it, namely Limulus factor C, Coch-5b2 and Lgl1. It is an about 100 amino acids domain whose C-terminal part contains a highly conserved histidine in a conserved motif YxxxSxxCxAAVHxGVI. The LCCL module is thought to be an autonomously folding domain that has been used for the construction of various modular proteins through exon-shuffling. It has been found in various metazoan proteins in association with complement B-type domains, C-type lectin domains, von Willebrand type A domains, CUB domains, discoidin lectin domains or CAP domains. It has been proposed that the LCCL domain could be involved in lipopolysaccharide (LPS) binding [, ]. Secondary structure prediction suggests that the LCCL domain contains six beta strands and two alpha helices []. Some proteins known to contain a LCCL domain include Limulus factor C, a LPS endotoxin-sensitive trypsin type serine protease which serves to protect the organism from bacterial infection; vertebrate cochlear protein cochlin or coch-5b2 (Cochlin is probably a secreted protein, mutations affecting the LCCL domain of coch-5b2 cause the deafness disorder DFNA9 in humans); and mammalian late gestation lung protein Lgl1, contains two tandem copies of the LCCL domain [].; PDB: 1JBI_A.
Probab=25.27 E-value=36 Score=24.78 Aligned_cols=28 Identities=7% Similarity=0.378 Sum_probs=21.8
Q ss_pred ccccccccccccCCchhhHHHHHHHHhcce
Q 038126 63 EEDNEAWGVEPFDSDDADANRMSLVRKGIV 92 (169)
Q Consensus 63 Ee~tEAWGVEPyd~edad~~CksLVrKGiV 92 (169)
++....||-.+|. +-++-|++-|+-|++
T Consensus 31 ~~~~~v~Gt~~Y~--~~SsIC~AAIHaGvi 58 (96)
T PF03815_consen 31 DSKGTVYGTDVYS--ADSSICKAAIHAGVI 58 (96)
T ss_dssp SSS--EESSSSEE--TTSBHHHHHHHHTSS
T ss_pred CCCCeEECCcccc--CCCHHHHHHHhCCEE
Confidence 3448999999997 456899999999988
No 83
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=25.14 E-value=32 Score=21.93 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=17.0
Q ss_pred cccCceEEEecCCcchhhhhhhh
Q 038126 131 VSADGVVIFAGYPHQQRAKVSEL 153 (169)
Q Consensus 131 vsadglVif~G~Pgqqrakvael 153 (169)
++++|.|.|+-.|-+..++..++
T Consensus 19 ~D~~G~v~ysd~P~~~~~~~~~i 41 (60)
T PF13511_consen 19 VDENGVVHYSDTPPPDGAKAETI 41 (60)
T ss_pred ECCCCCEEECccCCCCCCCeEEe
Confidence 57999999999888654444444
No 84
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=23.65 E-value=1.3e+02 Score=23.63 Aligned_cols=86 Identities=10% Similarity=0.108 Sum_probs=49.4
Q ss_pred hhccCCCchhhhhhhhcc--cccccccccccC--CchhhHHHHHHHHhcc----eeeeeecCcccccCCceeEEEecccc
Q 038126 46 RTGRDPETCSVVCKLLKE--EDNEAWGVEPFD--SDDADANRMSLVRKGI----VQATDIKFPLAFRAKSFSLAIVSDAV 117 (169)
Q Consensus 46 aLHvGPdTC~VVskLLkE--e~tEAWGVEPyd--~edad~~CksLVrKGi----VRvADIkfpLPYR~KSFSlViVSDal 117 (169)
.|.+|..|-+....|.+. ......|||+.+ ++-+..+++. -|+ +..+|..-.+| -...|++|+++-++
T Consensus 80 VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~---~g~~~v~~~~gd~~~~~~-~~~~fD~I~~~~~~ 155 (212)
T PRK13942 80 VLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK---LGYDNVEVIVGDGTLGYE-ENAPYDRIYVTAAG 155 (212)
T ss_pred EEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH---cCCCCeEEEECCcccCCC-cCCCcCEEEECCCc
Confidence 378888888766444432 346889999863 2224444443 243 34455443332 23679999988766
Q ss_pred cccCCCCchhhh-hcccCceEEE
Q 038126 118 DYLSPKTLPELA-RVSADGVVIF 139 (169)
Q Consensus 118 DyLspkTLPeLa-RvsadglVif 139 (169)
..+. +.+. .+..+|.+++
T Consensus 156 ~~~~----~~l~~~LkpgG~lvi 174 (212)
T PRK13942 156 PDIP----KPLIEQLKDGGIMVI 174 (212)
T ss_pred ccch----HHHHHhhCCCcEEEE
Confidence 4432 2332 4567777655
No 85
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=23.52 E-value=83 Score=27.97 Aligned_cols=50 Identities=36% Similarity=0.491 Sum_probs=40.0
Q ss_pred ccccccCCCCchh--------hhhcccCceEEEec-CCcchhhhhhhhhhcCCcccccc
Q 038126 115 DAVDYLSPKTLPE--------LARVSADGVVIFAG-YPHQQRAKVSELSKFGRPAKLRS 164 (169)
Q Consensus 115 DalDyLspkTLPe--------LaRvsadglVif~G-~PgqqrakvaelskfgrpaK~rs 164 (169)
|++=|+=||+..| |+|++.++.|+.+| .=.=.|+-...+.|+|-|.|.-|
T Consensus 39 d~~l~~~pK~~~e~e~qLa~ll~~~~~g~~i~v~g~~~~g~~s~~k~l~~~~~~~~~~~ 97 (300)
T COG2813 39 DAVLLYWPKHKAEAEFQLAQLLARLPPGGEIVVVGEKRDGVRSAEKMLEKYGGPTKTDS 97 (300)
T ss_pred CEEEEEccCchHHHHHHHHHHHhhCCCCCeEEEEecccchHHHHHHHHHHhcCccccch
Confidence 5555777899888 58999999999888 55566777889999999988643
No 86
>PF14789 THDPS_M: Tetrahydrodipicolinate N-succinyltransferase middle; PDB: 3R5A_F 3R5B_A 3R5C_B 3R5D_D 3FSY_C 3FSX_A 2RIJ_A.
Probab=23.46 E-value=59 Score=21.48 Aligned_cols=33 Identities=33% Similarity=0.754 Sum_probs=23.4
Q ss_pred cc-cccccCCchhhHHHHHHHHhc-ceeeeee-cCc
Q 038126 68 AW-GVEPFDSDDADANRMSLVRKG-IVQATDI-KFP 100 (169)
Q Consensus 68 AW-GVEPyd~edad~~CksLVrKG-iVRvADI-kfp 100 (169)
|| +-.|+++|+...+--+|-.+| .+.|.-| |||
T Consensus 5 aWT~~GP~~~~~~~~~r~~lr~~g~~~~V~~VDKFP 40 (41)
T PF14789_consen 5 AWTNAGPCEPEDFEENRLRLRARGRPLTVYSVDKFP 40 (41)
T ss_dssp EEETTEEEEHHHHHHHHHHHHHTT----EEEEESS-
T ss_pred eecCCCCcCHHHHHHHHHHHHhCCCCcEEEEEcCCC
Confidence 45 356999999999999999999 7777655 565
No 87
>TIGR03334 IOR_beta indolepyruvate ferredoxin oxidoreductase, beta subunit. This model represents the beta subunit of indolepyruvate ferredoxin oxidoreductase, an alpha(2)/beta(2) tetramer, as found in Pyrococcus furiosus and Methanobacterium thermoautotrophicum. Cofactors for the tetramer include TPP, 4Fe4S, and 3Fe-4S. It shows considerable sequence similarity to subunits of several other ketoacid oxidoreductases.
Probab=23.39 E-value=87 Score=24.30 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=29.4
Q ss_pred ceeeeeecCcccccCCceeEEEecccccccCCCCchhhhhcccCceEEEec
Q 038126 91 IVQATDIKFPLAFRAKSFSLAIVSDAVDYLSPKTLPELARVSADGVVIFAG 141 (169)
Q Consensus 91 iVRvADIkfpLPYR~KSFSlViVSDalDyLspkTLPeLaRvsadglVif~G 141 (169)
-||+.||.-|++.+ ...+++|+-|...++ .-+..+..+|+||+--
T Consensus 49 ~vris~i~sp~~~~-~~~Dilvald~~~~~-----~~~~~l~~~g~ii~n~ 93 (189)
T TIGR03334 49 HIRIGEVYGSMIPE-GGADLLLAFEPLEAL-----RYLPYLSEGGEVILNT 93 (189)
T ss_pred EEEEccccCCccCC-CCCCEEEEeCHHHHH-----HHHHhcCCCcEEEEeC
Confidence 46788866565554 456888888865543 3455567778887654
No 88
>COG3824 Predicted Zn-dependent protease [General function prediction only]
Probab=22.80 E-value=26 Score=28.62 Aligned_cols=32 Identities=28% Similarity=0.544 Sum_probs=24.2
Q ss_pred EEecccccccCCCCchhhhhcccCceEEEecCCcch
Q 038126 111 AIVSDAVDYLSPKTLPELARVSADGVVIFAGYPHQQ 146 (169)
Q Consensus 111 ViVSDalDyLspkTLPeLaRvsadglVif~G~Pgqq 146 (169)
.+|+||+|.|. +|++-+..+-||.++-||.|+
T Consensus 19 ~La~~A~d~lP----~efr~l~~~vvi~i~dfp~d~ 50 (136)
T COG3824 19 ELASDALDHLP----QEFRDLMGNVVILIADFPPDE 50 (136)
T ss_pred HHHHHHHHhCc----HHHHHHhcCeEEEeccCChHH
Confidence 36889999986 567777777666677799985
No 89
>PRK03612 spermidine synthase; Provisional
Probab=22.70 E-value=1.5e+02 Score=26.90 Aligned_cols=99 Identities=19% Similarity=0.075 Sum_probs=55.7
Q ss_pred hhhccCCCchhhhhhhhcccc-cccccccccCCchhhHHHHH---H--------HH-hcceeeeeecCcccccCCceeEE
Q 038126 45 VRTGRDPETCSVVCKLLKEED-NEAWGVEPFDSDDADANRMS---L--------VR-KGIVQATDIKFPLAFRAKSFSLA 111 (169)
Q Consensus 45 ~aLHvGPdTC~VVskLLkEe~-tEAWGVEPyd~edad~~Cks---L--------Vr-KGiVRvADIkfpLPYR~KSFSlV 111 (169)
+.|.+|..+..+...+++... .+...||.-+ ++-..|+. + -. +=-+..+|..--+.-..++|++|
T Consensus 300 rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~--~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvI 377 (521)
T PRK03612 300 RVLVLGGGDGLALREVLKYPDVEQVTLVDLDP--AMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVI 377 (521)
T ss_pred eEEEEcCCccHHHHHHHhCCCcCeEEEEECCH--HHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEE
Confidence 348899999999989998755 6777776421 12222222 0 00 11244567654455556789998
Q ss_pred EecccccccCCC--------Cchh-hhhcccCceEEEec-CCcch
Q 038126 112 IVSDAVDYLSPK--------TLPE-LARVSADGVVIFAG-YPHQQ 146 (169)
Q Consensus 112 iVSDalDyLspk--------TLPe-LaRvsadglVif~G-~Pgqq 146 (169)
|+ |.-|--.|. -+.+ ..++..+|++++.. .|.-+
T Consensus 378 i~-D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~ 421 (521)
T PRK03612 378 IV-DLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA 421 (521)
T ss_pred EE-eCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc
Confidence 76 544322221 0112 23578899988754 34433
No 90
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=22.66 E-value=1.1e+02 Score=26.36 Aligned_cols=90 Identities=16% Similarity=0.127 Sum_probs=52.3
Q ss_pred ccCCCchhhhhhhhcccccccccccccCCchhhHHHHHHHHhcceeeeeecCcccccCCceeEEEecccccccCC-----
Q 038126 48 GRDPETCSVVCKLLKEEDNEAWGVEPFDSDDADANRMSLVRKGIVQATDIKFPLAFRAKSFSLAIVSDAVDYLSP----- 122 (169)
Q Consensus 48 HvGPdTC~VVskLLkEe~tEAWGVEPyd~edad~~CksLVrKGiVRvADIkfpLPYR~KSFSlViVSDalDyLsp----- 122 (169)
++|=--++-++++|++..-+.-|.+..+.+ ..+.|-+.|+.-.-+ +-+-.. +.+.+||+|-++..-.|
T Consensus 6 GiggsGm~~la~~L~~~G~~v~~~D~~~~~----~~~~l~~~gi~~~~g-~~~~~~--~~~d~vV~spgi~~~~p~~~~a 78 (448)
T TIGR01082 6 GIGGIGMSGIAEILLNRGYQVSGSDIAENA----TTKRLEALGIPIYIG-HSAENL--DDADVVVVSAAIKDDNPEIVEA 78 (448)
T ss_pred EECHHHHHHHHHHHHHCCCeEEEECCCcch----HHHHHHHCcCEEeCC-CCHHHC--CCCCEEEECCCCCCCCHHHHHH
Confidence 344444666788999888887776654432 334566667644322 111112 24899999999876554
Q ss_pred -------CCchhhh-hccc-CceEEEecCCc
Q 038126 123 -------KTLPELA-RVSA-DGVVIFAGYPH 144 (169)
Q Consensus 123 -------kTLPeLa-Rvsa-dglVif~G~Pg 144 (169)
.+-+||+ ++.. .-+|..||-=|
T Consensus 79 ~~~~i~v~~~~el~~~~~~~~~~IaITGTnG 109 (448)
T TIGR01082 79 KERGIPVIRRAEMLAELMRFRHSIAVAGTHG 109 (448)
T ss_pred HHcCCceEeHHHHHHHHHhcCcEEEEECCCC
Confidence 2344554 4432 24777777544
No 91
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=22.34 E-value=37 Score=23.04 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=25.8
Q ss_pred EEEeccccccc-CC---CCchhhhhcccCceEEEecCCc
Q 038126 110 LAIVSDAVDYL-SP---KTLPELARVSADGVVIFAGYPH 144 (169)
Q Consensus 110 lViVSDalDyL-sp---kTLPeLaRvsadglVif~G~Pg 144 (169)
.+|+=|-.|+| +. .+|-+|.. +..--||++|.|.
T Consensus 89 ~~lviDe~~~l~~~~~l~~l~~l~~-~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 89 VLLVIDEADHLFSDEFLEFLRSLLN-ESNIKVVLVGTPE 126 (131)
T ss_dssp EEEEEETTHHHHTHHHHHHHHHHTC-SCBEEEEEEESST
T ss_pred eEEEEeChHhcCCHHHHHHHHHHHh-CCCCeEEEEEChh
Confidence 78888999999 77 34444444 7777899999983
No 92
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=22.00 E-value=1.5e+02 Score=25.96 Aligned_cols=88 Identities=14% Similarity=0.105 Sum_probs=49.1
Q ss_pred hccCCCchhhhhhhhcccccccccccccC--CchhhHHHHHHHHhcceeeeeecCcccccCCceeEEEecccccccCCCC
Q 038126 47 TGRDPETCSVVCKLLKEEDNEAWGVEPFD--SDDADANRMSLVRKGIVQATDIKFPLAFRAKSFSLAIVSDAVDYLSPKT 124 (169)
Q Consensus 47 LHvGPdTC~VVskLLkEe~tEAWGVEPyd--~edad~~CksLVrKGiVRvADIkfpLPYR~KSFSlViVSDalDyLspkT 124 (169)
|-+|-.+......+.+.-..+.-||++.+ ++-+..+++.+ .--+...|..- + ..+|.+|+...+++++.++.
T Consensus 172 LDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l--~v~~~~~D~~~-l---~~~fD~Ivs~~~~ehvg~~~ 245 (383)
T PRK11705 172 LDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL--PVEIRLQDYRD-L---NGQFDRIVSVGMFEHVGPKN 245 (383)
T ss_pred EEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC--eEEEEECchhh-c---CCCCCEEEEeCchhhCChHH
Confidence 66666666666666655455677776532 22233333211 00122234321 1 36899999999999987643
Q ss_pred ----chhhhhc-ccCceEEEe
Q 038126 125 ----LPELARV-SADGVVIFA 140 (169)
Q Consensus 125 ----LPeLaRv-sadglVif~ 140 (169)
+.++.|+ ..+|.+++.
T Consensus 246 ~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 246 YRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred HHHHHHHHHHHcCCCcEEEEE
Confidence 4455554 456777664
No 93
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=21.77 E-value=7.3 Score=32.74 Aligned_cols=53 Identities=25% Similarity=0.321 Sum_probs=42.7
Q ss_pred eeeeecCcccccC-------CceeEEEecccccccCCCCchhhhhcccCceEEEecCCcc
Q 038126 93 QATDIKFPLAFRA-------KSFSLAIVSDAVDYLSPKTLPELARVSADGVVIFAGYPHQ 145 (169)
Q Consensus 93 RvADIkfpLPYR~-------KSFSlViVSDalDyLspkTLPeLaRvsadglVif~G~Pgq 145 (169)
+-.|-+.-||.|+ .-|..|+.+|+-+||-+-.-|+....--+..+.|.|.|--
T Consensus 258 ~~r~~~~~lP~R~~de~~~dDp~RvVlf~DI~~~L~~l~~~~~~~~L~~~fl~f~glp~~ 317 (321)
T PF08424_consen 258 RSRDANHWLPARTMDEDDEDDPFRVVLFSDIEPFLFRLPSPENKLELVDAFLQFLGLPPL 317 (321)
T ss_pred HhhHHhhcCCCCCCCCcccCCcccccCHHHHHHHHHhcCCchHHHHHHHHHHHHcCCCCc
Confidence 3445667789998 2378999999999999966688888888888889998853
No 94
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=21.48 E-value=65 Score=27.96 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=17.5
Q ss_pred CCchhhhhcccCceEEEec
Q 038126 123 KTLPELARVSADGVVIFAG 141 (169)
Q Consensus 123 kTLPeLaRvsadglVif~G 141 (169)
-|.|||+|+..++++|--|
T Consensus 54 iTV~El~~~NP~~LliSPG 72 (223)
T KOG0026|consen 54 LTVEELKRKNPRGLLISPG 72 (223)
T ss_pred ccHHHHhhcCCCeEEecCC
Confidence 6999999999999999876
No 95
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=21.40 E-value=82 Score=28.20 Aligned_cols=63 Identities=24% Similarity=0.304 Sum_probs=44.0
Q ss_pred hhhhhhccccccccccc--ccCCchhhHHHHHHHHhcceeeeeecCcccccCCceeEEEecccccccCC
Q 038126 56 VVCKLLKEEDNEAWGVE--PFDSDDADANRMSLVRKGIVQATDIKFPLAFRAKSFSLAIVSDAVDYLSP 122 (169)
Q Consensus 56 VVskLLkEe~tEAWGVE--Pyd~edad~~CksLVrKGiVRvADIkfpLPYR~KSFSlViVSDalDyLsp 122 (169)
+....|.+++-.-=||+ |--++-|-. ..+. |=+-.-|.--+||||+-+|.-||.--|+.+|=-
T Consensus 63 LSg~vL~~~Gh~wiGvDiSpsML~~a~~---~e~e-gdlil~DMG~GlpfrpGtFDg~ISISAvQWLcn 127 (270)
T KOG1541|consen 63 LSGSVLSDSGHQWIGVDISPSMLEQAVE---RELE-GDLILCDMGEGLPFRPGTFDGVISISAVQWLCN 127 (270)
T ss_pred cchheeccCCceEEeecCCHHHHHHHHH---hhhh-cCeeeeecCCCCCCCCCccceEEEeeeeeeecc
Confidence 34556656663333654 444444443 3455 666778999999999999999999999998854
No 96
>PF14078 DUF4259: Domain of unknown function (DUF4259)
Probab=21.38 E-value=46 Score=23.97 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=16.2
Q ss_pred cccccccCCchhhHHHHHHHHh
Q 038126 68 AWGVEPFDSDDADANRMSLVRK 89 (169)
Q Consensus 68 AWGVEPyd~edad~~CksLVrK 89 (169)
+||..|||-+.+---.-.|...
T Consensus 2 aWg~g~FdnD~a~D~l~el~~~ 23 (128)
T PF14078_consen 2 AWGTGPFDNDTALDFLDELRDA 23 (128)
T ss_pred CCCCCCCCCchHHHHHHHHHHh
Confidence 7999999988865555555544
No 97
>COG2229 Predicted GTPase [General function prediction only]
Probab=20.94 E-value=55 Score=27.59 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=20.2
Q ss_pred CchhhhhcccCc--eEEEecCCcchhhh
Q 038126 124 TLPELARVSADG--VVIFAGYPHQQRAK 149 (169)
Q Consensus 124 TLPeLaRvsadg--lVif~G~Pgqqrak 149 (169)
+-+|.-+...++ -|-+-|.|||.|.+
T Consensus 55 va~D~g~~~~~~~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 55 VAMDFGSIELDEDTGVHLFGTPGQERFK 82 (187)
T ss_pred EeecccceEEcCcceEEEecCCCcHHHH
Confidence 346666677776 77888999999986
No 98
>PTZ00217 flap endonuclease-1; Provisional
Probab=20.47 E-value=59 Score=29.06 Aligned_cols=46 Identities=26% Similarity=0.220 Sum_probs=35.1
Q ss_pred hhhhccCCCchhhhhhhhcccccccccccccCCchhhHHHHHHHHhccee
Q 038126 44 RVRTGRDPETCSVVCKLLKEEDNEAWGVEPFDSDDADANRMSLVRKGIVQ 93 (169)
Q Consensus 44 ~~aLHvGPdTC~VVskLLkEe~tEAWGVEPyd~edad~~CksLVrKGiVR 93 (169)
+|+..|-|+.-..+-+||+.-.-+.. +-|| +||+.|-.|.+.|+|-
T Consensus 130 ~r~~~vt~~~~~~~~~lL~~~Gip~i-~AP~---EAdaq~A~L~~~g~v~ 175 (393)
T PTZ00217 130 KRTVRVTKEQNEDAKKLLRLMGIPVI-EAPC---EAEAQCAELVKKGKVY 175 (393)
T ss_pred hhcccCCHHHHHHHHHHHHHcCCceE-ECCc---CHHHHHHHHHHCCCeE
Confidence 44577778888888899966544433 6677 7889999999999875
No 99
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=20.42 E-value=77 Score=30.28 Aligned_cols=106 Identities=22% Similarity=0.297 Sum_probs=77.5
Q ss_pred hhhhhhhccCCCchhhhhhhhcccccccccccccCCchhhHHHHHHHHhcceeeeee--cCcccccCCceeEEEeccccc
Q 038126 41 GTVRVRTGRDPETCSVVCKLLKEEDNEAWGVEPFDSDDADANRMSLVRKGIVQATDI--KFPLAFRAKSFSLAIVSDAVD 118 (169)
Q Consensus 41 ~ev~~aLHvGPdTC~VVskLLkEe~tEAWGVEPyd~edad~~CksLVrKGiVRvADI--kfpLPYR~KSFSlViVSDalD 118 (169)
+.|+-+|-||=.+=+.-+.||+.+ --+-.+.|+|.. .+..+--.++|+--+--+ ..-|||=+.+|.+|=.|..+.
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~-V~t~s~a~~d~~--~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERN-VTTMSFAPNDEH--EAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCC-ceEEEcccccCC--chhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccc
Confidence 456666899988888888888544 446667776544 344555567897655333 567899999999999998875
Q ss_pred ccCC---CCchhhhhc-ccCceEEEecCCcchhhh
Q 038126 119 YLSP---KTLPELARV-SADGVVIFAGYPHQQRAK 149 (169)
Q Consensus 119 yLsp---kTLPeLaRv-sadglVif~G~Pgqqrak 149 (169)
--.+ .-|-|+-|| -.-|..+.+|.|-++|.+
T Consensus 193 ~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~ 227 (506)
T PF03141_consen 193 PWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTD 227 (506)
T ss_pred cchhcccceeehhhhhhccCceEEecCCcccccch
Confidence 4444 778999997 467999999999886543
No 100
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=20.36 E-value=1.2e+02 Score=20.60 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=16.7
Q ss_pred hhhcccCceEEEecCCcchhhhhhhh
Q 038126 128 LARVSADGVVIFAGYPHQQRAKVSEL 153 (169)
Q Consensus 128 LaRvsadglVif~G~Pgqqrakvael 153 (169)
+..++.+.+||+..++|..+.-+..+
T Consensus 48 ~~~~~~~d~vi~is~sg~~~~~~~~~ 73 (131)
T PF01380_consen 48 LENLDPDDLVIIISYSGETRELIELL 73 (131)
T ss_dssp GGGCSTTEEEEEEESSSTTHHHHHHH
T ss_pred cccccccceeEeeeccccchhhhhhh
Confidence 55667777777777777765444433
No 101
>smart00603 LCCL LCCL domain.
Probab=20.07 E-value=77 Score=22.93 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=23.9
Q ss_pred ccccccccccccCCchhhHHHHHHHHhccee
Q 038126 63 EEDNEAWGVEPFDSDDADANRMSLVRKGIVQ 93 (169)
Q Consensus 63 Ee~tEAWGVEPyd~edad~~CksLVrKGiVR 93 (169)
++....||-..|+. -++-|++-|+-|++.
T Consensus 29 ~~~~~V~Gt~~Y~~--dS~iC~AAiHaGvi~ 57 (85)
T smart00603 29 LEKAKVFGTIVYAS--LSSICRAAVHAGVIS 57 (85)
T ss_pred cCCCeEEeccccCC--CCHHHHHhhhCCEEc
Confidence 44488999888876 467899999999984
Done!