BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038127
         (438 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SJX|A Chain A, Three-Dimensional Structure Of A Llama Vhh Domain Oe7
           Binding The Cell Wall Protein Malf1
          Length = 122

 Score = 31.2 bits (69), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 64  IMEPGWTLGWTWAKKEVIWSMVGAQATEQGDCSKFKINIPHSCMKNPTVVDLLPGVPYNQ 123
           I + GW       ++E++ ++    +T+  D  K +  I     KN   + +    P + 
Sbjct: 31  INDMGWYRQAPGTQRELVAAITSGGSTKYADSVKGRFTISKDNAKNTVYLQMNSLKPEDT 90

Query: 124 QIANCC-----KGGVVGSWGQDPSAAVSS 147
            +  C      + G VG WGQ     VSS
Sbjct: 91  AVYYCAAEDRHRIGTVGYWGQGTQVTVSS 119


>pdb|4FJ6|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 33,
           Candidate Sialidase (Bdi_2946) From Parabacteroides
           Distasonis Atcc 8503 At 1.90 A Resolution
 pdb|4FJ6|B Chain B, Crystal Structure Of A Glycoside Hydrolase Family 33,
           Candidate Sialidase (Bdi_2946) From Parabacteroides
           Distasonis Atcc 8503 At 1.90 A Resolution
 pdb|4FJ6|C Chain C, Crystal Structure Of A Glycoside Hydrolase Family 33,
           Candidate Sialidase (Bdi_2946) From Parabacteroides
           Distasonis Atcc 8503 At 1.90 A Resolution
 pdb|4FJ6|D Chain D, Crystal Structure Of A Glycoside Hydrolase Family 33,
           Candidate Sialidase (Bdi_2946) From Parabacteroides
           Distasonis Atcc 8503 At 1.90 A Resolution
          Length = 523

 Score = 28.9 bits (63), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 13/26 (50%)

Query: 168 FTLLGPGRGYTCSQAKNVLPTAFISA 193
           F L GPGRG T      V P  FI A
Sbjct: 322 FLLQGPGRGITXQDGTLVFPIQFIDA 347


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.134    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,298,536
Number of Sequences: 62578
Number of extensions: 556286
Number of successful extensions: 1015
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1015
Number of HSP's gapped (non-prelim): 4
length of query: 438
length of database: 14,973,337
effective HSP length: 102
effective length of query: 336
effective length of database: 8,590,381
effective search space: 2886368016
effective search space used: 2886368016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)