Query 038127
Match_columns 438
No_of_seqs 118 out of 150
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 13:15:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ndz_E Endoglucanase D; cellot 95.6 0.038 1.3E-06 46.8 7.9 56 35-93 3-58 (107)
2 1exg_A EXO-1,4-beta-D-glycanas 93.9 0.13 4.6E-06 43.2 6.9 59 31-93 4-62 (110)
3 3icg_A Endoglucanase D; cellul 93.9 0.13 4.6E-06 52.4 8.1 60 31-93 379-438 (515)
4 1e5b_A Xylanase D; hydrolase, 93.1 0.031 1.1E-06 45.7 1.7 51 36-94 4-54 (87)
5 2cwr_A Chitinase; chitin-bindi 91.8 0.49 1.7E-05 39.8 7.4 51 37-94 12-62 (103)
6 1heh_C Endo-1,4-beta-xylanase 87.5 0.18 6E-06 41.4 1.3 54 33-94 2-55 (88)
7 3ndz_E Endoglucanase D; cellot 57.9 82 0.0028 26.3 9.9 103 283-402 3-105 (107)
8 1exg_A EXO-1,4-beta-D-glycanas 45.5 1.3E+02 0.0044 24.9 9.2 99 285-402 10-108 (110)
9 1dp4_A Atrial natriuretic pept 32.5 25 0.00085 33.3 2.9 65 29-105 366-432 (435)
10 3icg_A Endoglucanase D; cellul 30.4 2.1E+02 0.0072 28.9 9.5 106 282-404 382-487 (515)
No 1
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=95.62 E-value=0.038 Score=46.81 Aligned_cols=56 Identities=27% Similarity=0.412 Sum_probs=46.7
Q ss_pred EEEEEEEEEeeCCCeEEEEEEecCcccccccCCCCeEEEEecCCeeEEEeccceeeecC
Q 038127 35 ITIKWDVMSWIPDGYVALVTMTNFQMYRHIMEPGWTLGWTWAKKEVIWSMVGAQATEQG 93 (438)
Q Consensus 35 itI~wDV~~~~~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~EvIwsM~GA~~teqg 93 (438)
.+++|.|.+--.+||.|+|||.|.-- .-|+ ||+|+|++..++-|-++..|..+..|
T Consensus 3 c~v~y~v~~~W~~Gf~~~vtVtN~g~-~~i~--gWtv~~~~p~g~~it~~Wna~~s~sG 58 (107)
T 3ndz_E 3 VEVTYAITNSWGSGASVNVTIKNNGT-TPIN--GWTLKWTMPINQTITNMWSASFVASG 58 (107)
T ss_dssp EEEEEEEEEECSSEEEEEEEEEECSS-SCEE--SCEEEEECCTTEEEEEEESEEEEEET
T ss_pred cEEEEEEcccCCCCEEEEEEEEeCCC-Cccc--CcEEEEEcCCCCEEecccceEEEecC
Confidence 47899998888899999999999742 2365 99999999999999999998766543
No 2
>1exg_A EXO-1,4-beta-D-glycanase; cellulose binding domain, cellulose degradation; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1exh_A
Probab=93.93 E-value=0.13 Score=43.24 Aligned_cols=59 Identities=20% Similarity=0.406 Sum_probs=47.8
Q ss_pred CCCCEEEEEEEEEeeCCCeEEEEEEecCcccccccCCCCeEEEEecCCeeEEEeccceeeecC
Q 038127 31 PTGNITIKWDVMSWIPDGYVALVTMTNFQMYRHIMEPGWTLGWTWAKKEVIWSMVGAQATEQG 93 (438)
Q Consensus 31 p~GnitI~wDV~~~~~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~EvIwsM~GA~~teqg 93 (438)
+.|-.+++|. .+--.+||.|.|||.|.-- .-|+ ||+|.|+...++-|-++..|..+..|
T Consensus 4 ~~~~c~v~y~-~~~W~~Gf~~~vtVtN~g~-~~i~--gWtv~~~~~~g~~i~~~Wna~~s~sG 62 (110)
T 1exg_A 4 GPAGCQVLWG-VNQWNTGFTANVTVKNTSS-APVD--GWTLTFSFPSGQQVTQAWSSTVTQSG 62 (110)
T ss_dssp CCCCEEEECC-EEESSSEEEEEEEEEECSS-SCEE--SEEEEEECSSSCEEEEEESSEEEEET
T ss_pred CCCcEEEEEE-eCCCCCCEEEEEEEEeCCC-Cccc--ceEEEEEcCCCcEEecccceEEEccC
Confidence 3477899998 6777899999999999642 2355 99999999999888888888776544
No 3
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM glucanase, carbohydrate metabolism, cellulose degradation, glycosidase; HET: BTB; 2.10A {Clostridium cellulovorans}
Probab=93.87 E-value=0.13 Score=52.44 Aligned_cols=60 Identities=27% Similarity=0.427 Sum_probs=50.3
Q ss_pred CCCCEEEEEEEEEeeCCCeEEEEEEecCcccccccCCCCeEEEEecCCeeEEEeccceeeecC
Q 038127 31 PTGNITIKWDVMSWIPDGYVALVTMTNFQMYRHIMEPGWTLGWTWAKKEVIWSMVGAQATEQG 93 (438)
Q Consensus 31 p~GnitI~wDV~~~~~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~EvIwsM~GA~~teqg 93 (438)
+.|-.+++|.|.+--.+||.|.|||.|.-- .-|+ ||+|+|++..++-|-+...|..+..|
T Consensus 379 ~~~~~~~~~~~~~~W~~g~~~~v~v~n~~~-~~~~--~W~~~~~~~~~~~i~~~wn~~~~~~g 438 (515)
T 3icg_A 379 PQSAVEVTYAITNSWGSGASVNVTIKNNGT-TPIN--GWTLKWTMPINQTITNMWSASFVASG 438 (515)
T ss_dssp --CCEEEEEEEEEECSSEEEEEEEEEECSS-SCEE--SCEEEEECCTTEEEEEEESEEEEEET
T ss_pred CCCceEEEEEEecCCCCccEEEEEEEeCCC-CCcC--CeEEEEEeCCCCEeeccccceEEecC
Confidence 457799999999999999999999999753 3465 99999999999999999999877644
No 4
>1e5b_A Xylanase D; hydrolase, xylan binding domain, beta-sheet; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1e5c_A 1xbd_A 2xbd_A
Probab=93.15 E-value=0.031 Score=45.74 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=41.3
Q ss_pred EEEEEEEEeeCCCeEEEEEEecCcccccccCCCCeEEEEecCCeeEEEeccceeeecCC
Q 038127 36 TIKWDVMSWIPDGYVALVTMTNFQMYRHIMEPGWTLGWTWAKKEVIWSMVGAQATEQGD 94 (438)
Q Consensus 36 tI~wDV~~~~~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~EvIwsM~GA~~teqgd 94 (438)
+.+|.|.+.-++||.|.|+|.| + .||+|.|++..++=|-++..|..+..|.
T Consensus 4 ta~y~v~~~W~~Gf~~~vtVtn------~--~gWtv~~~~~~g~~i~~~Wn~~~s~sg~ 54 (87)
T 1e5b_A 4 SVTATRAEEWSDGFNVTYSVSG------S--SAWTVNLALNGSQTIQASWNANVTGSGS 54 (87)
T ss_dssp CCBCCBCCCCSSEEEEEEBCCS------C--SSCCCEEECCTTCCEEEEESBCCEESSS
T ss_pred EEEEEECccCCCCEEEEEEEEc------c--CceEEEEEcCCCCEEeeeeceeEecCCC
Confidence 4567776666799999999998 3 4999999999999888888887765443
No 5
>2cwr_A Chitinase; chitin-binding domain, endoglucanase, hyperthermophilic, hydrolase; 1.70A {Pyrococcus furiosus} PDB: 2czn_A
Probab=91.81 E-value=0.49 Score=39.76 Aligned_cols=51 Identities=20% Similarity=0.078 Sum_probs=41.1
Q ss_pred EEEEEEEeeCCCeEEEEEEecCcccccccCCCCeEEEEecCCeeEEEeccceeeecCC
Q 038127 37 IKWDVMSWIPDGYVALVTMTNFQMYRHIMEPGWTLGWTWAKKEVIWSMVGAQATEQGD 94 (438)
Q Consensus 37 I~wDV~~~~~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~EvIwsM~GA~~teqgd 94 (438)
.+|.+ +-=.+||.|.|||.|-- + .||+|.|++..++=|-++..|..+..|.
T Consensus 12 c~y~~-n~W~~Gf~~~vtVtN~g----~--~gWtv~~~~~~g~~it~~Wna~~s~sg~ 62 (103)
T 2cwr_A 12 LEVKV-NDWGSGAEYDVTLNLDG----Q--YDWTVKVKLAPGATVGSFWSANKQEGNG 62 (103)
T ss_dssp EEEEE-EECSSEEEEEEEEEESS----C--CCCEEEEEECTTCEEEEEESEEEEEETT
T ss_pred EEEEE-CCCCCceEEEEEEeCCC----C--CcEEEEEECCCCcEEecccceEEecCCC
Confidence 36764 54578999999999983 3 4999999999999999999888776443
No 6
>1heh_C Endo-1,4-beta-xylanase D; hydrolase(xylan degradation), hydrolase, xylan binding domain, beta-sheet; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1hej_C
Probab=87.49 E-value=0.18 Score=41.39 Aligned_cols=54 Identities=11% Similarity=0.085 Sum_probs=42.3
Q ss_pred CCEEEEEEEEEeeCCCeEEEEEEecCcccccccCCCCeEEEEecCCeeEEEeccceeeecCC
Q 038127 33 GNITIKWDVMSWIPDGYVALVTMTNFQMYRHIMEPGWTLGWTWAKKEVIWSMVGAQATEQGD 94 (438)
Q Consensus 33 GnitI~wDV~~~~~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~EvIwsM~GA~~teqgd 94 (438)
|--+.+|.|.+-=.+||.|.|||. + + .||+|.|++..++=|-++..|..+..|.
T Consensus 2 g~Ctaty~~~n~W~~Gf~a~vtVt-----g-~--~gWtv~~~~~~gq~vt~~Wna~~s~sg~ 55 (88)
T 1heh_C 2 GSCSVSAVRGEEWADRFNVTYSVS-----G-S--SSWVVTLGLNGGQSVQSSWNAALTGSSG 55 (88)
T ss_dssp CCCCCCCCCCSBCSSEEEEEEECS-----S-C--CSCCCEEECCSSCCCCCEESSEEECSSS
T ss_pred CceEEEEEEcccCCCceEEEEEEe-----c-c--ccEEEEEECCCCCEEEccccccCccCCC
Confidence 334567777666679999999998 3 2 5999999999999898888887765443
No 7
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=57.95 E-value=82 Score=26.29 Aligned_cols=103 Identities=17% Similarity=0.280 Sum_probs=66.9
Q ss_pred eeEeEEEeeccccceEEEEEEEecccccCccceeeEeecCCCCCcceEEeeecccCCCCCCCCceeEEEecchhhhHhhh
Q 038127 283 IRVHWHVKLNYKKYWRVKMSITNFNYQVNYTEWTLVVQHPNLNNVTEVFSFNYKPLIPYDSTNDTGMFYGIKFFNDILLQ 362 (438)
Q Consensus 283 V~IhWHvk~nYk~~WrvkiTi~N~~~~~ny~~W~lvVqhpn~~~~t~vySFN~t~L~~y~~~NdT~m~~Gl~~yN~ll~~ 362 (438)
.++-..|..+...|..+.|||+|=. ......|.+-+..|.=..++++..=..+. .-++..+-.. .||--|..
T Consensus 3 c~v~y~v~~~W~~Gf~~~vtVtN~g-~~~i~gWtv~~~~p~g~~it~~Wna~~s~------sG~~vt~~n~-~wN~~la~ 74 (107)
T 3ndz_E 3 VEVTYAITNSWGSGASVNVTIKNNG-TTPINGWTLKWTMPINQTITNMWSASFVA------SGTTLSVTNA-GYNGTIAA 74 (107)
T ss_dssp EEEEEEEEEECSSEEEEEEEEEECS-SSCEESCEEEEECCTTEEEEEEESEEEEE------ETTEEEEEEC-STTCEECT
T ss_pred cEEEEEEcccCCCCEEEEEEEEeCC-CCcccCcEEEEEcCCCCEEecccceEEEe------cCCEEEEEEC-CcccccCC
Confidence 4577888899999999999999976 36788999999999755566655443331 1234555443 34433321
Q ss_pred cCCCCceeEEEEEeecCCCcccccCCCCceeeEeeCCccC
Q 038127 363 SGPEGNVQSELILQKDMNTFTYKQGWAFPRKIYFNGDECS 402 (438)
Q Consensus 363 ~g~~G~vQSeilf~Kd~~~ft~~~GwaFP~rVyFNGeEC~ 402 (438)
. |- -.++-|.-.. .+..+-|....+||..|.
T Consensus 75 ~---G~-s~~fGf~g~~-----~G~~~~P~~~~lnG~~C~ 105 (107)
T 3ndz_E 75 N---GG-TQSFGFNINY-----SGVLSKPTGFTVNGTECT 105 (107)
T ss_dssp T---TE-EEEEEEEEEE-----CSSCCCCSCCEETTEECE
T ss_pred C---Cc-cEEEEEEEeC-----CCCCCCCcEEEECCCccc
Confidence 1 21 2345444221 233577999999999995
No 8
>1exg_A EXO-1,4-beta-D-glycanase; cellulose binding domain, cellulose degradation; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1exh_A
Probab=45.46 E-value=1.3e+02 Score=24.89 Aligned_cols=99 Identities=16% Similarity=0.282 Sum_probs=62.7
Q ss_pred EeEEEeeccccceEEEEEEEecccccCccceeeEeecCCCCCcceEEeeecccCCCCCCCCceeEEEecchhhhHhhhcC
Q 038127 285 VHWHVKLNYKKYWRVKMSITNFNYQVNYTEWTLVVQHPNLNNVTEVFSFNYKPLIPYDSTNDTGMFYGIKFFNDILLQSG 364 (438)
Q Consensus 285 IhWHvk~nYk~~WrvkiTi~N~~~~~ny~~W~lvVqhpn~~~~t~vySFN~t~L~~y~~~NdT~m~~Gl~~yN~ll~~~g 364 (438)
+... ..+...+..++|||+|=. ......|.+-+..|.=..+++. .|.+.-. ..++..+-. ..||--|.-
T Consensus 10 v~y~-~~~W~~Gf~~~vtVtN~g-~~~i~gWtv~~~~~~g~~i~~~--Wna~~s~----sG~~vt~~n-~~wN~~la~-- 78 (110)
T 1exg_A 10 VLWG-VNQWNTGFTANVTVKNTS-SAPVDGWTLTFSFPSGQQVTQA--WSSTVTQ----SGSAVTVRN-APWNGSIPA-- 78 (110)
T ss_dssp EECC-EEESSSEEEEEEEEEECS-SSCEESEEEEEECSSSCEEEEE--ESSEEEE----ETTEEEEEE-CSGGGEECS--
T ss_pred EEEE-eCCCCCCEEEEEEEEeCC-CCcccceEEEEEcCCCcEEecc--cceEEEc----cCCEEEEec-ccccceeCC--
Confidence 3334 578899999999999965 4677899999999874445554 4444221 123555555 456655432
Q ss_pred CCCceeEEEEEeecCCCcccccCCCCceeeEeeCCccC
Q 038127 365 PEGNVQSELILQKDMNTFTYKQGWAFPRKIYFNGDECS 402 (438)
Q Consensus 365 ~~G~vQSeilf~Kd~~~ft~~~GwaFP~rVyFNGeEC~ 402 (438)
| ...++-|.-.. .+...-|....+||..|.
T Consensus 79 --G-~s~~fGf~~~~-----~g~~~~Pt~~~lnG~~C~ 108 (110)
T 1exg_A 79 --G-GTAQFGFNGSH-----TGTNAAPTAFSLNGTPCT 108 (110)
T ss_dssp --S-EEEEEEEEEEC-----SSSCCCCSCEEETTEEEE
T ss_pred --C-cEEEEEEEEeC-----CCCCCCCceEEEcCcccC
Confidence 2 12455555321 123456899999999994
No 9
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=32.52 E-value=25 Score=33.26 Aligned_cols=65 Identities=14% Similarity=0.315 Sum_probs=33.7
Q ss_pred CCCCCCEEEEEEEEEee-CCCeEEEEEEecCcccccccCCCCeEEEEe-cCCeeEEEeccceeeecCCcccccCCCCcc
Q 038127 29 LDPTGNITIKWDVMSWI-PDGYVALVTMTNFQMYRHIMEPGWTLGWTW-AKKEVIWSMVGAQATEQGDCSKFKINIPHS 105 (438)
Q Consensus 29 ldp~GnitI~wDV~~~~-~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W-~~~EvIwsM~GA~~teqgdCs~f~~~~ph~ 105 (438)
.|++|+..-.|+|+++. .+|-.. .+..+.+.. + ...+ .+..++|. -|--+.....| .|.++.++|
T Consensus 366 fd~~g~~~~~~~i~~~~~~~g~~~--~vg~~~~~~----~----~l~~~~~~~i~W~-~~~~P~~~p~C-gf~~~~~~C 432 (435)
T 1dp4_A 366 IDRNGDRDTDFSLWDMDPETGAFR--VVLNYNGTS----Q----ELMAVSEHKLYWP-LGYPPPDVPKC-GFDNEDPAC 432 (435)
T ss_dssp ECTTSBBCCCEEEEEECTTTCCEE--EEEEECTTT----C----CEEESTTCCCCCT-TSSCCCSSCTT-CC-------
T ss_pred ECCCCCccceeEEEEecCCCCcEE--EEEEecCCC----c----eEEEcCCceeeCC-CCCCCCCCCCC-CcCCCcCCC
Confidence 36788877789999994 456333 333333221 1 2344 56778884 34445566777 555554443
No 10
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM glucanase, carbohydrate metabolism, cellulose degradation, glycosidase; HET: BTB; 2.10A {Clostridium cellulovorans}
Probab=30.40 E-value=2.1e+02 Score=28.93 Aligned_cols=106 Identities=17% Similarity=0.265 Sum_probs=68.2
Q ss_pred ceeEeEEEeeccccceEEEEEEEecccccCccceeeEeecCCCCCcceEEeeecccCCCCCCCCceeEEEecchhhhHhh
Q 038127 282 PIRVHWHVKLNYKKYWRVKMSITNFNYQVNYTEWTLVVQHPNLNNVTEVFSFNYKPLIPYDSTNDTGMFYGIKFFNDILL 361 (438)
Q Consensus 282 pV~IhWHvk~nYk~~WrvkiTi~N~~~~~ny~~W~lvVqhpn~~~~t~vySFN~t~L~~y~~~NdT~m~~Gl~~yN~ll~ 361 (438)
+.++-..|..+...|..+.|||+|=. ......|.+-+..|.-..++++.+=+.+. ..++..+-.. .||--|.
T Consensus 382 ~~~~~~~~~~~W~~g~~~~v~v~n~~-~~~~~~W~~~~~~~~~~~i~~~wn~~~~~------~g~~~~~~~~-~~n~~~~ 453 (515)
T 3icg_A 382 AVEVTYAITNSWGSGASVNVTIKNNG-TTPINGWTLKWTMPINQTITNMWSASFVA------SGTTLSVTNA-GYNGTIA 453 (515)
T ss_dssp CEEEEEEEEEECSSEEEEEEEEEECS-SSCEESCEEEEECCTTEEEEEEESEEEEE------ETTEEEEEEC-STTCEEC
T ss_pred ceEEEEEEecCCCCccEEEEEEEeCC-CCCcCCeEEEEEeCCCCEeeccccceEEe------cCCeEEEecC-ccccccC
Confidence 34577888999999999999999976 36778999999999765666665443331 1234555443 3343322
Q ss_pred hcCCCCceeEEEEEeecCCCcccccCCCCceeeEeeCCccCCC
Q 038127 362 QSGPEGNVQSELILQKDMNTFTYKQGWAFPRKIYFNGDECSMP 404 (438)
Q Consensus 362 ~~g~~G~vQSeilf~Kd~~~ft~~~GwaFP~rVyFNGeEC~mP 404 (438)
. .| .-.++=|.-.. .+..+=|....+||..|.-.
T Consensus 454 ~---~g-~s~~~gf~~~~-----~g~~~~p~~~~lng~~c~~~ 487 (515)
T 3icg_A 454 A---NG-GTQSFGFNINY-----SGVLSKPTGFTVNGTECTVK 487 (515)
T ss_dssp T---TT-EEEEEEEEEEE-----CSSCCCCSCCEETTEECEEC
T ss_pred C---CC-ceEEEEEEEeC-----CCCCCCCceEEECCcccCCC
Confidence 1 02 22234343221 23456789999999999763
Done!