BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>038128
MEAANVQGQPLEVTVIACKGLKDTEWLSKQDPYVYGGKNPTFQEKFMFPLIHGVNEMNLV
VWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCANVWNFLV
LYLSSFILNTGMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPP
PGPHPYGAPHPAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHGHGGDYIL
RHN

High Scoring Gene Products

Symbol, full name Information P value
AT4G34150 protein from Arabidopsis thaliana 2.4e-28
AT1G63220 protein from Arabidopsis thaliana 1.2e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  038128
        (243 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2124321 - symbol:AT4G34150 "AT4G34150" species...   316  2.4e-28   1
TAIR|locus:2038461 - symbol:AT1G63220 "AT1G63220" species...   105  1.2e-05   1


>TAIR|locus:2124321 [details] [associations]
            symbol:AT4G34150 "AT4G34150" species:3702 "Arabidopsis
            thaliana" [GO:0009409 "response to cold" evidence=IEP] [GO:0005829
            "cytosol" evidence=IDA] [GO:0009506 "plasmodesma" evidence=IDA]
            [GO:0006612 "protein targeting to membrane" evidence=RCA]
            [GO:0006944 "cellular membrane fusion" evidence=RCA] [GO:0009611
            "response to wounding" evidence=RCA] [GO:0009612 "response to
            mechanical stimulus" evidence=RCA] [GO:0009646 "response to absence
            of light" evidence=RCA] [GO:0010200 "response to chitin"
            evidence=RCA] [GO:0010363 "regulation of plant-type hypersensitive
            response" evidence=RCA] [GO:0030968 "endoplasmic reticulum unfolded
            protein response" evidence=RCA] [GO:0043069 "negative regulation of
            programmed cell death" evidence=RCA] [GO:0052542 "defense response
            by callose deposition" evidence=RCA] InterPro:IPR000008
            InterPro:IPR008973 Pfam:PF00168 SMART:SM00239 GO:GO:0005829
            GO:GO:0009506 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009409
            InterPro:IPR018029 SUPFAM:SSF49562 PROSITE:PS50004
            InterPro:IPR021934 PROSITE:PS51516 eggNOG:NOG85357 EMBL:AF412098
            EMBL:BT000766 EMBL:BT014883 IPI:IPI00522312 RefSeq:NP_567956.1
            UniGene:At.20546 ProteinModelPortal:Q945K9 SMR:Q945K9 IntAct:Q945K9
            STRING:Q945K9 PaxDb:Q945K9 PRIDE:Q945K9 EnsemblPlants:AT4G34150.1
            GeneID:829563 KEGG:ath:AT4G34150 TAIR:At4g34150
            HOGENOM:HOG000029763 InParanoid:Q945K9 OMA:TDINRDP PhylomeDB:Q945K9
            ProtClustDB:CLSN2721561 Genevestigator:Q945K9 Uniprot:Q945K9
        Length = 247

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 63/125 (50%), Positives = 84/125 (67%)

Query:     4 ANVQGQPLEVTVIACKGLKDTEWLSKQDPYV---YGG------------KNPTFQEKFMF 48
             A +QGQ LEVTV+ C+ LKDTEW S+QDPYV   YGG            KN  FQEKF+F
Sbjct:     5 AGIQGQILEVTVVGCQKLKDTEWFSRQDPYVVLEYGGRSHRTRTCTDGGKNAVFQEKFIF 64

Query:    49 PLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNI 108
              LI G+ ++ + VWNSNT++ DDFIG+  +QL K ++Q YDD  W L +++G+ AGEV +
Sbjct:    65 TLIEGLRDLKVAVWNSNTLSTDDFIGNATIQLQKVLSQEYDDCTWTLQSKTGRFAGEVQL 124

Query:   109 ILRCA 113
             +L  A
Sbjct:   125 LLHYA 129


>TAIR|locus:2038461 [details] [associations]
            symbol:AT1G63220 "AT1G63220" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000008 InterPro:IPR008973 Pfam:PF00168
            SMART:SM00239 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC022355
            InterPro:IPR018029 SUPFAM:SSF49562 PROSITE:PS50004 EMBL:AY054623
            EMBL:AY081504 EMBL:AY085843 IPI:IPI00525156 PIR:H96657
            RefSeq:NP_176511.1 UniGene:At.24672 PDB:1WFJ PDBsum:1WFJ
            ProteinModelPortal:Q9C8S6 SMR:Q9C8S6 PaxDb:Q9C8S6 PRIDE:Q9C8S6
            EnsemblPlants:AT1G63220.1 GeneID:842627 KEGG:ath:AT1G63220
            TAIR:At1g63220 eggNOG:NOG289233 HOGENOM:HOG000005983
            InParanoid:Q9C8S6 OMA:GLENTDF PhylomeDB:Q9C8S6
            ProtClustDB:CLSN2682388 EvolutionaryTrace:Q9C8S6
            Genevestigator:Q9C8S6 GermOnline:AT1G63220 Uniprot:Q9C8S6
        Length = 147

 Score = 105 (42.0 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 26/92 (28%), Positives = 44/92 (47%)

Query:    11 LEVTVIACKGLKDTEWLSKQDPYVY--------------G-GKNPTFQEKFMFPLIHGVN 55
             LEV +++ KGL+D ++L+  DPYV               G G  P + E F+F +  G  
Sbjct:     6 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 65

Query:    56 EMNLVVWNSNTITGDDFIGSGKVQLTKAITQG 87
             E+   +++ +  T DD +G   + L     +G
Sbjct:    66 ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEG 97


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.136   0.438    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      243       161   0.00074  107 3  11 22  0.40    32
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  174 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.77u 0.12s 13.89t   Elapsed:  00:00:01
  Total cpu time:  13.77u 0.12s 13.89t   Elapsed:  00:00:01
  Start:  Fri May 10 16:18:00 2013   End:  Fri May 10 16:18:01 2013

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