BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038128
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
Query: 11 LEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVN 55
LEV +++ KGL+D ++L+ DPYV G P + E F+F + G
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 56 EMNLVVWNSNTITGDDFIGSGKVQLTKAITQG 87
E+ +++ + T DD +G + L +G
Sbjct: 72 ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEG 103
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 20/99 (20%)
Query: 2 EAANVQGQPLEVTVIACKGLKDTEWLSKQDPYVY--------------------GGKNPT 41
E N + + V VIA GL + L DPYV NP
Sbjct: 1 ELHNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPK 60
Query: 42 FQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQL 80
+ E+ +F ++ + + V++ N +T DDF+G V L
Sbjct: 61 WNEEILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPL 99
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 20/90 (22%)
Query: 11 LEVTVIACKGLKDTEWLSKQDPYVY--------------------GGKNPTFQEKFMFPL 50
+ V VIA GL + L DPYV NP + E+ +F +
Sbjct: 22 VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRV 81
Query: 51 IHGVNEMNLVVWNSNTITGDDFIGSGKVQL 80
+ + V++ N +T DDF+G V L
Sbjct: 82 HPQQHRLLFEVFDENRLTRDDFLGQVDVPL 111
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 39 NPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYD-DNPWP--- 94
NP + E+F F + + + V++ N +T DDF+G V L+ T+ + P+
Sbjct: 72 NPKWNEEFYFRVNPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTFKD 131
Query: 95 LWTRSGKHAGEVNIILRCANVW 116
R H V LR +
Sbjct: 132 FLLRPRSHKSRVKGFLRLKMAY 153
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 25/96 (26%)
Query: 10 PLEVTVIACKGLKDTEWLSKQDPYV--------------YGGKNPTFQEKFMFPLIHGVN 55
+ +TV+ +GL+ + DPYV YG NP ++E F F + +
Sbjct: 18 KISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSD 77
Query: 56 EMNLVVWNSN-----------TITGDDFIGSGKVQL 80
+ + V + + DDF+G +++
Sbjct: 78 RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEV 113
>pdb|2GTR|A Chain A, Human Chromodomain Y-Like Protein
pdb|2GTR|B Chain B, Human Chromodomain Y-Like Protein
pdb|2GTR|C Chain C, Human Chromodomain Y-Like Protein
Length = 261
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 30 QDPYVYGGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKV 78
Q PY G++P MFP I G N ++ + +T + G G V
Sbjct: 135 QTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLV 183
>pdb|1PC3|A Chain A, Crystal Structure Of The Extracellular Phosphate Abc
Transport Receptor (Psts-1) And Immunodominant Antigen
Of M. Tuberculosis.
pdb|1PC3|B Chain B, Crystal Structure Of The Extracellular Phosphate Abc
Transport Receptor (Psts-1) And Immunodominant Antigen
Of M. Tuberculosis
Length = 350
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 24 TEWLSKQDPYVYGGKNPTFQEKFMFPLIHGV 54
T++LSKQDP + GK+P F FP + G
Sbjct: 172 TQYLSKQDPEGW-GKSPGFGTTVDFPAVPGA 201
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 18/86 (20%)
Query: 11 LEVTVIACKGLKDTEWLSKQDPY--------------VYGGKNPTFQEKFMFPL--IHGV 54
L+V V+ L ++ K DP+ VY NP + + F FP+ IH V
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDV 74
Query: 55 NEMNLVVWNSNTITGDDFIGSGKVQL 80
+ + V++ + DF+G + L
Sbjct: 75 --LEVTVFDEDGDKPPDFLGKVAIPL 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,701,085
Number of Sequences: 62578
Number of extensions: 219240
Number of successful extensions: 434
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 9
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)