BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038128
(243 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A0QIY2|IF2_MYCA1 Translation initiation factor IF-2 OS=Mycobacterium avium (strain
104) GN=infB PE=3 SV=1
Length = 914
Score = 35.4 bits (80), Expect = 0.32, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 161 GYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPA-----PGPYPYGAPPNQHPNGPPPGAHP 215
G P P P P+P+A P G +P+ + P GAP P P PGA P
Sbjct: 157 GATPGPRPGPAPKPAARTPRVGNNPFSSAQPVDRPIPRPVPRPGAP---RPGAPRPGASP 213
>sp|Q73VV4|IF2_MYCPA Translation initiation factor IF-2 OS=Mycobacterium
paratuberculosis (strain ATCC BAA-968 / K-10) GN=infB
PE=3 SV=1
Length = 925
Score = 35.4 bits (80), Expect = 0.37, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 161 GYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPA-----PGPYPYGAPPNQHPNGPPPGAHP 215
G P P P P+P+A P G +P+ + P GAP P P PGA P
Sbjct: 157 GATPGPRPGPAPKPAARTPRVGNNPFSSAQPVDRPIPRPVPRPGAP---RPGAPRPGASP 213
>sp|Q1E878|HSE1_COCIM Class E vacuolar protein-sorting machinery protein HSE1
OS=Coccidioides immitis (strain RS) GN=HSE1 PE=3 SV=1
Length = 612
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 127 ILNTGMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPY 186
+L MT PA H + P+ P Y P + GYP PP PQ Y P P P
Sbjct: 364 LLEASMTHPAQSH---YNRPAQPPFAYPPSGTHPGYPHHAPPQQEPQ-RYYTPRPSQDPQ 419
Query: 187 GAPHPAPGPYPYGAPPNQHP 206
APH PG YGA P+ P
Sbjct: 420 SAPHNTPG--YYGAEPSTLP 437
>sp|P17931|LEG3_HUMAN Galectin-3 OS=Homo sapiens GN=LGALS3 PE=1 SV=5
Length = 250
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 141 PAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYP-QPSAYAPPPGPHPYGAPHPAPGPYPYG 199
P SYP + P P G YP Q PP YP P AY P P Y P PG YP
Sbjct: 37 PGASYPGAYPGQAPP----GAYPGQAPPGAYPGAPGAYPGAPAPGVYPGPPSGPGAYPSS 92
Query: 200 APPNQHPNGPPPGAHPYGAPPGP 222
P+ G P PYGAP GP
Sbjct: 93 GQPSA--TGAYPATGPYGAPAGP 113
>sp|P16110|LEG3_MOUSE Galectin-3 OS=Mus musculus GN=Lgals3 PE=1 SV=3
Length = 264
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 144 SYPSSDPPPYHP-PAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGA--PHPAPGPYPYGA 200
+YP PP +P A G YP Q PPS YP P+A PGP GA PAPG +P G
Sbjct: 43 AYPGQAPPGAYPGQAPPGAYPGQAPPSAYPGPTAPGAYPGPTAPGAYPGQPAPGAFP-GQ 101
Query: 201 P--PNQHP--NGPPPGAHPYGAPPGPPSYGYGAP 230
P P +P +G P A PYG P GP + Y P
Sbjct: 102 PGAPGAYPQCSGGYPAAGPYGVPAGPLTVPYDLP 135
>sp|P08699|LEG3_RAT Galectin-3 OS=Rattus norvegicus GN=Lgals3 PE=1 SV=4
Length = 262
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 50/102 (49%), Gaps = 16/102 (15%)
Query: 141 PAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGA-PHP-APGPYP- 197
P SYP + P P GGYP Q PPS YP P+ + PGP GA P P APG +P
Sbjct: 36 PGASYPGAYPGQAPP----GGYPGQAPPSAYPGPTGPSAYPGPTAPGAYPGPTAPGAFPG 91
Query: 198 -------YGAPPNQHPNGPP--PGAHPYGAPPGPPSYGYGAP 230
Y + P +P+ P P P+GAP GP + Y P
Sbjct: 92 QPGGPGAYPSAPGAYPSAPGAYPATGPFGAPTGPLTVPYDMP 133
>sp|Q32L53|LFG1_BOVIN Protein lifeguard 1 OS=Bos taurus GN=GRINA PE=2 SV=1
Length = 366
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 49/92 (53%), Gaps = 14/92 (15%)
Query: 152 PYHP-PAGYGGYPPQPPP---SGYPQPSAYAPPPGPHPYGAPHPAPGPYPYG-APPNQHP 206
P+ P P G GYP P P GYPQ PPG +P G P+P PG YP G PP +P
Sbjct: 41 PFQPSPYGQPGYPQGPSPYPQGGYPQGPY---PPGGYPQG-PYP-PGGYPQGPYPPGGYP 95
Query: 207 NGPPPGA----HPYGAPPGPPSYGYGAPQHGH 234
GP P + +PYG P P+ G+P HG+
Sbjct: 96 QGPYPQSPFPPNPYGQPQAFPAQDPGSPHHGN 127
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.140 0.475
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,015,646
Number of Sequences: 539616
Number of extensions: 8453448
Number of successful extensions: 98935
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1508
Number of HSP's successfully gapped in prelim test: 2511
Number of HSP's that attempted gapping in prelim test: 30222
Number of HSP's gapped (non-prelim): 28044
length of query: 243
length of database: 191,569,459
effective HSP length: 114
effective length of query: 129
effective length of database: 130,053,235
effective search space: 16776867315
effective search space used: 16776867315
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)