Query 038128
Match_columns 243
No_of_seqs 282 out of 1216
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 07:52:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04016 C2_Tollip C2 domain pr 99.9 1.6E-22 3.5E-27 157.1 13.2 103 9-112 2-121 (121)
2 cd08681 C2_fungal_Inn1p-like C 99.9 6E-21 1.3E-25 146.9 13.5 102 9-112 1-118 (118)
3 cd04042 C2A_MCTP_PRT C2 domain 99.9 6.2E-21 1.3E-25 147.7 12.6 105 10-114 1-121 (121)
4 cd08682 C2_Rab11-FIP_classI C2 99.8 1.9E-20 4.1E-25 146.0 11.7 101 11-111 1-126 (126)
5 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.8E-19 3.9E-24 140.8 13.4 106 7-115 2-125 (126)
6 cd08678 C2_C21orf25-like C2 do 99.8 1.7E-19 3.6E-24 140.8 13.0 105 11-117 1-124 (126)
7 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.6E-19 3.6E-24 140.2 12.6 103 10-112 1-121 (121)
8 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 2.3E-19 5E-24 139.2 13.0 102 10-111 1-123 (123)
9 cd04019 C2C_MCTP_PRT_plant C2 99.8 2.6E-19 5.7E-24 144.1 13.1 108 10-117 1-136 (150)
10 cd04022 C2A_MCTP_PRT_plant C2 99.8 2.2E-19 4.7E-24 140.2 12.3 104 10-113 1-126 (127)
11 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 3.3E-19 7.3E-24 139.9 13.1 104 10-113 1-133 (133)
12 cd08379 C2D_MCTP_PRT_plant C2 99.8 2.4E-19 5.1E-24 140.3 11.5 99 10-108 1-125 (126)
13 cd04024 C2A_Synaptotagmin-like 99.8 4.5E-19 9.8E-24 138.0 12.9 104 9-112 1-128 (128)
14 cd08376 C2B_MCTP_PRT C2 domain 99.8 4.3E-19 9.4E-24 136.1 12.6 100 10-113 1-115 (116)
15 cd04044 C2A_Tricalbin-like C2 99.8 5.9E-19 1.3E-23 136.4 12.6 106 9-114 2-124 (124)
16 cd08377 C2C_MCTP_PRT C2 domain 99.8 1.6E-18 3.5E-23 133.3 13.6 102 9-112 1-118 (119)
17 cd08375 C2_Intersectin C2 doma 99.8 1.8E-18 3.8E-23 137.1 14.0 102 8-112 14-135 (136)
18 cd04015 C2_plant_PLD C2 domain 99.8 1.1E-18 2.5E-23 141.6 13.0 108 5-113 3-158 (158)
19 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 1.7E-18 3.7E-23 134.3 13.1 102 10-111 1-120 (121)
20 cd04036 C2_cPLA2 C2 domain pre 99.8 1.2E-18 2.6E-23 134.5 12.1 100 10-113 1-118 (119)
21 KOG1030 Predicted Ca2+-depende 99.8 4.6E-19 9.9E-24 142.5 9.8 84 7-90 4-101 (168)
22 cd08378 C2B_MCTP_PRT_plant C2 99.8 1.7E-18 3.7E-23 134.4 12.5 98 11-113 2-120 (121)
23 cd04051 C2_SRC2_like C2 domain 99.8 1E-18 2.3E-23 135.8 11.0 99 10-108 1-125 (125)
24 cd08391 C2A_C2C_Synaptotagmin_ 99.8 5.2E-18 1.1E-22 130.6 12.2 100 9-112 1-121 (121)
25 cd04014 C2_PKC_epsilon C2 doma 99.8 1.4E-17 2.9E-22 130.9 13.4 101 8-114 3-130 (132)
26 cd08381 C2B_PI3K_class_II C2 d 99.8 6.7E-18 1.5E-22 131.3 10.7 89 6-95 10-121 (122)
27 cd04046 C2_Calpain C2 domain p 99.8 1E-17 2.2E-22 130.8 11.7 104 8-114 2-123 (126)
28 cd04028 C2B_RIM1alpha C2 domai 99.8 9E-18 1.9E-22 134.5 11.4 93 7-99 27-140 (146)
29 cd08677 C2A_Synaptotagmin-13 C 99.8 4.4E-18 9.6E-23 131.2 9.2 89 4-95 9-118 (118)
30 cd08382 C2_Smurf-like C2 domai 99.8 1.7E-17 3.7E-22 129.0 12.5 101 10-111 1-123 (123)
31 cd04043 C2_Munc13_fungal C2 do 99.8 2.9E-17 6.2E-22 127.7 13.7 102 10-116 2-124 (126)
32 cd04010 C2B_RasA3 C2 domain se 99.7 1E-17 2.2E-22 134.6 11.1 89 10-100 1-125 (148)
33 cd08373 C2A_Ferlin C2 domain f 99.7 2.9E-17 6.3E-22 128.1 12.8 101 15-117 2-120 (127)
34 cd04027 C2B_Munc13 C2 domain s 99.7 2.9E-17 6.3E-22 128.4 12.4 99 10-110 2-127 (127)
35 cd08395 C2C_Munc13 C2 domain t 99.7 1.4E-17 3.1E-22 129.2 10.2 87 10-97 1-112 (120)
36 cd04049 C2_putative_Elicitor-r 99.7 3.5E-17 7.5E-22 127.1 12.0 91 9-99 1-110 (124)
37 cd08387 C2A_Synaptotagmin-8 C2 99.7 2E-17 4.2E-22 128.5 10.5 90 7-96 14-123 (124)
38 cd08393 C2A_SLP-1_2 C2 domain 99.7 2.1E-17 4.5E-22 129.0 10.4 91 6-96 12-125 (125)
39 cd08385 C2A_Synaptotagmin-1-5- 99.7 2.5E-17 5.4E-22 127.8 10.6 91 6-96 13-123 (124)
40 cd04045 C2C_Tricalbin-like C2 99.7 6.4E-17 1.4E-21 125.4 12.9 90 9-99 1-105 (120)
41 cd04017 C2D_Ferlin C2 domain f 99.7 5.2E-17 1.1E-21 128.2 12.5 105 10-115 2-134 (135)
42 cd04029 C2A_SLP-4_5 C2 domain 99.7 3.1E-17 6.8E-22 128.0 10.9 91 6-96 12-125 (125)
43 cd08685 C2_RGS-like C2 domain 99.7 2.6E-17 5.6E-22 127.5 9.8 89 6-95 9-119 (119)
44 cd04040 C2D_Tricalbin-like C2 99.7 4.2E-17 9E-22 124.8 10.8 98 11-108 1-114 (115)
45 cd08394 C2A_Munc13 C2 domain f 99.7 5.5E-17 1.2E-21 126.4 10.9 85 9-97 2-101 (127)
46 cd08392 C2A_SLP-3 C2 domain fi 99.7 5E-17 1.1E-21 127.5 10.0 90 6-95 12-127 (128)
47 cd04041 C2A_fungal C2 domain f 99.7 7.2E-17 1.6E-21 123.2 10.6 85 9-96 1-107 (111)
48 cd08680 C2_Kibra C2 domain fou 99.7 6.3E-17 1.4E-21 126.3 10.2 91 5-95 10-124 (124)
49 cd08688 C2_KIAA0528-like C2 do 99.7 8.4E-17 1.8E-21 122.7 10.5 87 11-97 1-109 (110)
50 cd04031 C2A_RIM1alpha C2 domai 99.7 1.1E-16 2.4E-21 124.0 11.1 90 6-96 13-125 (125)
51 cd08521 C2A_SLP C2 domain firs 99.7 1E-16 2.2E-21 124.0 10.8 90 6-95 11-123 (123)
52 cd04050 C2B_Synaptotagmin-like 99.7 1.2E-16 2.6E-21 120.8 10.5 85 10-97 1-102 (105)
53 cd08690 C2_Freud-1 C2 domain f 99.7 2.4E-16 5.1E-21 127.4 12.3 106 10-115 3-139 (155)
54 cd04030 C2C_KIAA1228 C2 domain 99.7 1.3E-16 2.8E-21 124.1 10.5 91 6-96 13-127 (127)
55 cd08389 C2A_Synaptotagmin-14_1 99.7 1.5E-16 3.3E-21 124.0 9.8 91 6-96 13-123 (124)
56 cd04039 C2_PSD C2 domain prese 99.7 4.3E-16 9.4E-21 118.7 11.2 79 9-87 1-99 (108)
57 cd08386 C2A_Synaptotagmin-7 C2 99.7 2.8E-16 6E-21 122.0 10.3 92 5-96 12-124 (125)
58 cd08390 C2A_Synaptotagmin-15-1 99.7 2.4E-16 5.2E-21 121.9 9.7 91 6-96 11-122 (123)
59 cd04021 C2_E3_ubiquitin_ligase 99.7 1.7E-15 3.6E-20 118.2 12.8 100 9-110 2-124 (125)
60 KOG0696 Serine/threonine prote 99.7 8.5E-17 1.8E-21 145.5 6.1 94 5-99 176-290 (683)
61 cd04038 C2_ArfGAP C2 domain pr 99.7 1.5E-15 3.2E-20 121.6 12.3 77 9-86 2-92 (145)
62 cd08388 C2A_Synaptotagmin-4-11 99.7 6.6E-16 1.4E-20 121.0 9.9 91 5-95 12-126 (128)
63 cd08404 C2B_Synaptotagmin-4 C2 99.7 4.5E-16 9.8E-21 122.9 8.7 93 7-101 13-127 (136)
64 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 6.5E-16 1.4E-20 125.9 9.9 90 7-96 25-137 (162)
65 cd04026 C2_PKC_alpha_gamma C2 99.7 1.1E-15 2.5E-20 119.6 10.8 93 5-98 9-122 (131)
66 cd08384 C2B_Rabphilin_Doc2 C2 99.6 4.4E-16 9.4E-21 122.3 8.3 94 5-100 9-124 (133)
67 cd08383 C2A_RasGAP C2 domain ( 99.6 1.4E-15 2.9E-20 116.5 10.8 97 10-112 1-117 (117)
68 cd04013 C2_SynGAP_like C2 doma 99.6 2.6E-15 5.7E-20 120.1 12.6 104 8-116 10-142 (146)
69 PLN03008 Phospholipase D delta 99.6 9.4E-16 2E-20 149.2 11.8 111 6-117 11-181 (868)
70 cd08675 C2B_RasGAP C2 domain s 99.6 1.3E-15 2.9E-20 120.7 10.3 88 11-99 1-122 (137)
71 cd04037 C2E_Ferlin C2 domain f 99.6 1.1E-15 2.3E-20 119.1 9.4 102 10-114 1-120 (124)
72 cd04018 C2C_Ferlin C2 domain t 99.6 2.1E-15 4.5E-20 121.5 10.6 88 10-97 1-125 (151)
73 cd04009 C2B_Munc13-like C2 dom 99.6 3.1E-15 6.7E-20 117.8 11.0 79 7-85 14-118 (133)
74 cd08405 C2B_Synaptotagmin-7 C2 99.6 1.1E-15 2.3E-20 120.7 7.5 92 7-100 13-126 (136)
75 cd08691 C2_NEDL1-like C2 domai 99.6 9.6E-15 2.1E-19 115.8 12.9 99 10-110 2-136 (137)
76 KOG1028 Ca2+-dependent phospho 99.6 3.8E-15 8.3E-20 138.2 12.1 116 4-119 162-300 (421)
77 cd08402 C2B_Synaptotagmin-1 C2 99.6 1E-15 2.2E-20 120.8 7.1 91 6-98 12-124 (136)
78 cd08403 C2B_Synaptotagmin-3-5- 99.6 1.2E-15 2.5E-20 120.2 7.3 94 5-100 10-125 (134)
79 cd00275 C2_PLC_like C2 domain 99.6 1.6E-14 3.6E-19 112.1 13.5 100 9-112 2-127 (128)
80 cd04011 C2B_Ferlin C2 domain s 99.6 2.8E-15 6.1E-20 114.3 8.8 86 8-97 3-110 (111)
81 cd00276 C2B_Synaptotagmin C2 d 99.6 1.4E-15 3.1E-20 119.0 7.2 91 7-99 12-124 (134)
82 cd08406 C2B_Synaptotagmin-12 C 99.6 1.8E-15 4E-20 119.8 7.8 91 6-98 12-124 (136)
83 cd08407 C2B_Synaptotagmin-13 C 99.6 1.4E-15 3.1E-20 120.7 7.2 91 6-98 12-126 (138)
84 cd04032 C2_Perforin C2 domain 99.6 3.8E-15 8.3E-20 116.7 9.3 75 9-84 28-118 (127)
85 cd04048 C2A_Copine C2 domain f 99.6 1.3E-14 2.9E-19 112.0 10.8 85 13-97 4-114 (120)
86 cd04052 C2B_Tricalbin-like C2 99.6 1.4E-14 3.1E-19 110.5 10.1 86 25-114 8-110 (111)
87 cd08410 C2B_Synaptotagmin-17 C 99.6 4.9E-15 1.1E-19 117.0 7.4 94 6-100 11-126 (135)
88 cd08408 C2B_Synaptotagmin-14_1 99.6 3.9E-15 8.4E-20 118.2 6.7 93 6-99 12-127 (138)
89 cd08676 C2A_Munc13-like C2 dom 99.6 2.1E-14 4.7E-19 115.8 10.6 84 7-95 26-153 (153)
90 cd08409 C2B_Synaptotagmin-15 C 99.6 5.6E-15 1.2E-19 117.1 7.0 91 6-97 12-124 (137)
91 cd04035 C2A_Rabphilin_Doc2 C2 99.6 2.4E-14 5.2E-19 110.9 9.7 81 7-88 13-116 (123)
92 PLN03200 cellulose synthase-in 99.6 1.2E-14 2.6E-19 152.5 10.3 107 4-114 1975-2101(2102)
93 cd08686 C2_ABR C2 domain in th 99.5 7.9E-14 1.7E-18 107.4 11.3 66 11-82 1-92 (118)
94 cd08692 C2B_Tac2-N C2 domain s 99.5 2.6E-14 5.6E-19 112.7 8.1 91 6-97 11-123 (135)
95 KOG1011 Neurotransmitter relea 99.5 6.7E-14 1.4E-18 131.6 9.0 107 9-117 295-428 (1283)
96 cd04047 C2B_Copine C2 domain s 99.5 4.7E-13 1E-17 101.6 10.3 74 11-85 2-100 (110)
97 KOG2059 Ras GTPase-activating 99.4 2.3E-12 5E-17 122.3 11.4 109 8-117 4-129 (800)
98 PF00168 C2: C2 domain; Inter 99.4 1.8E-12 4E-17 92.4 7.6 67 11-77 1-85 (85)
99 PLN02270 phospholipase D alpha 99.3 1E-11 2.2E-16 121.2 13.1 111 6-117 5-152 (808)
100 cd00030 C2 C2 domain. The C2 d 99.3 1.8E-11 3.9E-16 88.5 10.5 85 11-95 1-102 (102)
101 smart00239 C2 Protein kinase C 99.3 4E-11 8.7E-16 87.2 10.6 78 10-87 1-96 (101)
102 COG5038 Ca2+-dependent lipid-b 99.2 4.6E-11 1E-15 118.8 11.8 113 4-117 431-561 (1227)
103 PLN02223 phosphoinositide phos 99.2 1.5E-10 3.2E-15 109.0 11.9 102 8-112 408-536 (537)
104 cd08374 C2F_Ferlin C2 domain s 99.2 1.4E-10 3.1E-15 91.3 9.5 78 10-87 1-125 (133)
105 KOG1328 Synaptic vesicle prote 99.2 7.1E-12 1.5E-16 119.3 1.7 107 10-117 115-305 (1103)
106 PLN02952 phosphoinositide phos 99.1 5.1E-10 1.1E-14 107.2 12.4 103 8-113 469-597 (599)
107 KOG1028 Ca2+-dependent phospho 99.1 2.2E-10 4.9E-15 106.5 8.5 88 7-96 296-405 (421)
108 COG5038 Ca2+-dependent lipid-b 99.1 4E-10 8.6E-15 112.3 8.8 109 7-115 1038-1163(1227)
109 KOG0169 Phosphoinositide-speci 99.0 1.6E-09 3.4E-14 104.4 11.7 102 10-114 617-745 (746)
110 PLN02230 phosphoinositide phos 99.0 2.6E-09 5.6E-14 102.3 12.8 102 8-112 468-597 (598)
111 PLN02352 phospholipase D epsil 99.0 4.3E-09 9.3E-14 102.7 12.1 108 5-117 6-134 (758)
112 PLN02228 Phosphoinositide phos 99.0 8.6E-09 1.9E-13 98.3 12.9 106 9-117 431-565 (567)
113 PLN02222 phosphoinositide phos 98.9 1.3E-08 2.8E-13 97.4 12.4 102 8-112 451-580 (581)
114 cd08689 C2_fungal_Pkc1p C2 dom 98.9 5.5E-09 1.2E-13 78.5 7.6 74 11-86 1-89 (109)
115 KOG1031 Predicted Ca2+-depende 98.7 5.5E-08 1.2E-12 91.4 8.1 106 8-113 2-136 (1169)
116 KOG2059 Ras GTPase-activating 98.7 4.5E-08 9.7E-13 93.6 7.4 109 8-117 130-280 (800)
117 KOG1264 Phospholipase C [Lipid 98.7 1.5E-07 3.3E-12 91.2 10.4 108 5-116 1061-1192(1267)
118 KOG1328 Synaptic vesicle prote 98.6 1.5E-08 3.3E-13 97.0 1.6 78 6-83 944-1047(1103)
119 KOG1013 Synaptic vesicle prote 98.4 7.4E-08 1.6E-12 85.1 1.3 114 4-117 88-233 (362)
120 KOG1326 Membrane-associated pr 98.2 1.3E-06 2.9E-11 86.4 5.5 76 9-84 613-705 (1105)
121 KOG3837 Uncharacterized conser 98.1 3E-06 6.4E-11 77.1 5.3 111 5-115 363-505 (523)
122 KOG1011 Neurotransmitter relea 98.1 1.2E-05 2.5E-10 76.9 7.5 107 3-110 1119-1251(1283)
123 KOG0905 Phosphoinositide 3-kin 98.0 6.5E-06 1.4E-10 82.8 4.5 93 5-97 1520-1635(1639)
124 cd08684 C2A_Tac2-N C2 domain f 98.0 7.2E-06 1.6E-10 59.7 3.2 71 12-84 2-93 (103)
125 KOG1327 Copine [Signal transdu 97.8 6.2E-05 1.3E-09 71.1 7.9 75 10-85 137-236 (529)
126 KOG1013 Synaptic vesicle prote 97.8 3E-05 6.5E-10 68.9 5.5 78 4-81 228-327 (362)
127 cd08683 C2_C2cd3 C2 domain fou 97.8 7.8E-05 1.7E-09 58.1 6.8 85 11-95 1-143 (143)
128 PLN02964 phosphatidylserine de 97.6 3.1E-05 6.6E-10 75.4 3.0 85 8-99 53-155 (644)
129 PF10358 NT-C2: N-terminal C2 97.6 0.0016 3.6E-08 51.2 12.1 81 36-117 48-139 (143)
130 KOG1924 RhoA GTPase effector D 97.5 0.00058 1.3E-08 66.8 10.0 7 155-161 534-540 (1102)
131 KOG1326 Membrane-associated pr 97.3 0.00026 5.6E-09 70.6 5.0 62 56-117 940-1026(1105)
132 KOG2060 Rab3 effector RIM1 and 97.2 0.0002 4.2E-09 64.8 2.4 93 7-99 267-381 (405)
133 PF15627 CEP76-C2: CEP76 C2 do 97.1 0.007 1.5E-07 48.9 10.0 81 36-116 54-153 (156)
134 PF12416 DUF3668: Cep120 prote 96.9 0.011 2.3E-07 53.8 10.7 104 11-117 2-136 (340)
135 cd08693 C2_PI3K_class_I_beta_d 96.7 0.01 2.2E-07 48.9 8.0 72 9-82 8-119 (173)
136 cd08398 C2_PI3K_class_I_alpha 96.6 0.014 3E-07 47.4 8.1 71 9-82 8-105 (158)
137 cd08380 C2_PI3K_like C2 domain 96.2 0.027 5.9E-07 45.2 7.8 74 9-83 8-107 (156)
138 PF11618 DUF3250: Protein of u 96.0 0.042 9.1E-07 41.7 7.7 77 36-113 19-105 (107)
139 KOG1265 Phospholipase C [Lipid 96.0 0.025 5.3E-07 56.5 7.9 86 5-101 699-809 (1189)
140 KOG1924 RhoA GTPase effector D 95.9 0.1 2.2E-06 51.7 11.5 7 38-44 442-448 (1102)
141 cd04012 C2A_PI3K_class_II C2 d 95.9 0.028 6E-07 46.1 6.8 75 8-82 7-118 (171)
142 cd08687 C2_PKN-like C2 domain 95.7 0.035 7.7E-07 40.8 5.8 63 37-112 30-92 (98)
143 KOG1327 Copine [Signal transdu 94.9 0.072 1.6E-06 50.8 6.6 61 36-96 50-115 (529)
144 cd08397 C2_PI3K_class_III C2 d 94.8 0.1 2.2E-06 42.3 6.5 46 37-82 57-106 (159)
145 cd08399 C2_PI3K_class_I_gamma 94.8 0.16 3.5E-06 42.0 7.7 56 9-65 10-88 (178)
146 KOG1329 Phospholipase D1 [Lipi 94.7 0.12 2.6E-06 51.8 7.9 78 38-115 162-242 (887)
147 KOG1452 Predicted Rho GTPase-a 94.4 0.088 1.9E-06 47.1 5.6 103 7-114 49-168 (442)
148 PF14924 DUF4497: Protein of u 93.0 0.53 1.2E-05 35.7 7.0 61 56-116 30-107 (112)
149 PF00792 PI3K_C2: Phosphoinosi 92.7 0.27 5.8E-06 38.8 5.3 46 38-83 32-85 (142)
150 cd08694 C2_Dock-A C2 domains f 92.4 0.47 1E-05 39.8 6.5 46 36-81 62-114 (196)
151 PF14429 DOCK-C2: C2 domain in 92.1 0.59 1.3E-05 38.5 6.9 47 36-82 68-120 (184)
152 cd08695 C2_Dock-B C2 domains f 90.7 0.94 2E-05 37.8 6.6 47 36-82 62-113 (189)
153 smart00142 PI3K_C2 Phosphoinos 89.9 1.6 3.4E-05 32.4 6.7 29 37-65 59-91 (100)
154 cd08679 C2_DOCK180_related C2 88.3 3.4 7.3E-05 33.9 8.2 47 36-82 61-115 (178)
155 PF15625 CC2D2AN-C2: CC2D2A N- 87.5 1.5 3.3E-05 35.7 5.6 44 40-84 64-107 (168)
156 PTZ00447 apical membrane antig 87.3 2.6 5.7E-05 38.4 7.3 66 44-111 104-171 (508)
157 cd08696 C2_Dock-C C2 domains f 86.6 3.8 8.3E-05 33.9 7.6 47 36-82 63-118 (179)
158 cd08697 C2_Dock-D C2 domains f 81.2 13 0.00028 30.9 8.5 47 36-82 65-123 (185)
159 PF07162 B9-C2: Ciliary basal 80.4 14 0.00031 29.9 8.5 44 37-80 54-101 (168)
160 KOG4027 Uncharacterized conser 80.4 11 0.00025 30.5 7.5 41 41-81 65-109 (187)
161 KOG0694 Serine/threonine prote 77.3 1.3 2.8E-05 43.6 1.6 73 36-114 49-122 (694)
162 PF01060 DUF290: Transthyretin 70.4 16 0.00035 25.7 5.5 26 54-79 11-36 (80)
163 cd05137 RasGAP_CLA2_BUD2 CLA2/ 63.7 8.6 0.00019 35.8 3.8 43 72-115 1-46 (395)
164 KOG4269 Rac GTPase-activating 58.4 8.2 0.00018 39.3 2.7 41 7-52 757-816 (1112)
165 PF10409 PTEN_C2: C2 domain of 54.7 94 0.002 23.7 9.5 73 9-81 4-95 (134)
166 PF06219 DUF1005: Protein of u 54.1 42 0.00092 31.5 6.4 59 55-114 95-168 (460)
167 KOG3543 Ca2+-dependent activat 52.6 80 0.0017 31.4 8.2 100 10-113 342-459 (1218)
168 KOG2181 LIM domain binding pro 51.1 9.3 0.0002 34.3 1.6 41 37-79 68-108 (415)
169 PF03646 FlaG: FlaG protein; 51.0 32 0.0007 25.5 4.4 39 42-85 53-91 (107)
170 PF04234 CopC: CopC domain; I 47.3 36 0.00078 24.8 4.1 67 45-111 21-97 (97)
171 KOG4028 Uncharacterized conser 45.1 66 0.0014 25.4 5.3 24 55-78 74-97 (175)
172 KOG0904 Phosphatidylinositol 3 44.1 56 0.0012 33.6 5.9 27 37-63 390-420 (1076)
173 KOG0132 RNA polymerase II C-te 43.6 3.8E+02 0.0082 27.5 12.2 17 70-86 506-522 (894)
174 PF12416 DUF3668: Cep120 prote 40.7 2.7E+02 0.0059 25.4 9.5 26 56-86 271-296 (340)
175 PRK08868 flagellar protein Fla 40.5 53 0.0011 26.2 4.3 41 40-85 85-125 (144)
176 COG2372 CopC Uncharacterized p 38.6 83 0.0018 24.5 5.0 69 43-111 46-125 (127)
177 PF08174 Anillin: Cell divisio 38.5 78 0.0017 24.5 5.0 25 40-64 65-89 (140)
178 PF10349 WWbp: WW-domain ligan 37.8 1.6E+02 0.0034 22.4 6.4 15 100-114 3-17 (116)
179 PF14472 DUF4429: Domain of un 36.6 70 0.0015 23.3 4.2 15 70-84 21-35 (94)
180 KOG0906 Phosphatidylinositol 3 33.8 35 0.00075 33.9 2.7 43 40-82 77-123 (843)
181 KOG0450 2-oxoglutarate dehydro 32.7 22 0.00047 35.6 1.1 29 7-35 433-461 (1017)
182 KOG2893 Zn finger protein [Gen 30.3 3.7E+02 0.0081 23.5 10.6 7 232-238 250-256 (341)
183 PF08646 Rep_fac-A_C: Replicat 28.9 9.2 0.0002 30.1 -1.8 41 38-81 48-88 (146)
184 PF13860 FlgD_ig: FlgD Ig-like 27.8 2.1E+02 0.0046 19.8 7.2 62 45-113 15-78 (81)
185 smart00686 DM13 Domain present 25.4 82 0.0018 23.7 3.0 34 43-79 66-102 (108)
186 PRK07738 flagellar protein Fla 25.0 1.5E+02 0.0032 22.8 4.3 38 42-84 62-99 (117)
187 PF02248 Como_SCP: Small coat 24.4 1.2E+02 0.0027 25.0 4.0 50 3-52 61-111 (182)
188 PF14186 Aida_C2: Cytoskeletal 23.4 2.2E+02 0.0048 22.8 5.2 33 54-86 82-115 (147)
189 cd04476 RPA1_DBD_C RPA1_DBD_C: 22.2 40 0.00088 26.9 0.8 34 39-75 63-96 (166)
190 PF08877 MepB: MepB protein; 21.6 2.4E+02 0.0053 21.8 5.0 33 49-87 50-82 (123)
191 PF15084 DUF4550: Domain of un 21.1 71 0.0015 23.8 1.8 27 38-64 50-82 (99)
192 PF08530 PepX_C: X-Pro dipepti 21.0 2.3E+02 0.0051 23.3 5.3 28 54-81 110-137 (218)
193 PF11754 Velvet: Velvet factor 20.7 2.5E+02 0.0055 23.4 5.4 48 70-117 98-147 (203)
194 KOG0241 Kinesin-like protein [ 20.7 22 0.00047 36.9 -1.2 96 10-110 687-810 (1714)
No 1
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.89 E-value=1.6e-22 Score=157.12 Aligned_cols=103 Identities=23% Similarity=0.446 Sum_probs=90.4
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCcee
Q 038128 9 QPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFI 73 (243)
Q Consensus 9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~I 73 (243)
++|+|+|++|++|++.+ ++++||||+ ++.||+|||+|.|.|.+....|.|+|||+|.+++|++|
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i 80 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI 80 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence 68999999999998887 789999997 47899999999999987667899999999999999999
Q ss_pred eEEEEEchH-hhhcCCCCCceeecCCCC-ccceEEEEEEEE
Q 038128 74 GSGKVQLTK-AITQGYDDNPWPLWTRSG-KHAGEVNIILRC 112 (243)
Q Consensus 74 G~~~i~L~~-l~~~~~~~~~~~L~~~~g-~~~G~L~l~l~~ 112 (243)
|+++|+|.+ +......+.|+.|..+++ +..|+|+|+|+|
T Consensus 81 G~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 81 AWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 999999964 555555789999987654 578999999986
No 2
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.86 E-value=6e-21 Score=146.89 Aligned_cols=102 Identities=30% Similarity=0.522 Sum_probs=90.7
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCce
Q 038128 9 QPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDDF 72 (243)
Q Consensus 9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~~ 72 (243)
++|+|+|++|++|+..+..+++||||+ ++.||+|||+|.|.+... ...|.|+|||++..+ |++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 579999999999999999999999998 367999999999999764 468999999999876 999
Q ss_pred eeEEEEEchHhhhcCCCCCceeecCCCCccceEEEEEEEE
Q 038128 73 IGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRC 112 (243)
Q Consensus 73 IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l~l~~ 112 (243)
||++.|+|++++.......|+.|. .+++..|+|+|+|+|
T Consensus 80 iG~~~~~l~~~~~~~~~~~w~~L~-~~~~~~G~i~l~l~f 118 (118)
T cd08681 80 IGDTEVDLSPALKEGEFDDWYELT-LKGRYAGEVYLELTF 118 (118)
T ss_pred eEEEEEecHHHhhcCCCCCcEEec-cCCcEeeEEEEEEEC
Confidence 999999999998776678899998 456789999999986
No 3
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.86 E-value=6.2e-21 Score=147.70 Aligned_cols=105 Identities=21% Similarity=0.347 Sum_probs=94.6
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCceee
Q 038128 10 PLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIG 74 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG 74 (243)
.|+|+|++|++|...+..+.+||||+ ++.||+|||+|.|.+.+....|+|+|||++.+++|++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 48999999999999999999999998 788999999999999776678999999999998999999
Q ss_pred EEEEEchHhhhcCCCCCceeecCCCC-ccceEEEEEEEEEe
Q 038128 75 SGKVQLTKAITQGYDDNPWPLWTRSG-KHAGEVNIILRCAN 114 (243)
Q Consensus 75 ~~~i~L~~l~~~~~~~~~~~L~~~~g-~~~G~L~l~l~~~~ 114 (243)
++.|+|.++........|+.|...++ +..|+|.|+++|.+
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 81 SAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence 99999999987777778999986654 68999999999864
No 4
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.84 E-value=1.9e-20 Score=146.03 Aligned_cols=101 Identities=24% Similarity=0.368 Sum_probs=87.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeC------CCceEEEEEEecCCCCCC
Q 038128 11 LEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIH------GVNEMNLVVWNSNTITGD 70 (243)
Q Consensus 11 L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~------~~~~L~v~V~d~~~~~~d 70 (243)
|+|+|++|+||..++..+.+||||+ ++.||+|||+|+|.+.+ ....|.|+|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 5799999999999998899999999 68999999999999966 355799999999999889
Q ss_pred ceeeEEEEEchHhh--hcCCCCCceeecCCCC---ccceEEEEEEE
Q 038128 71 DFIGSGKVQLTKAI--TQGYDDNPWPLWTRSG---KHAGEVNIILR 111 (243)
Q Consensus 71 ~~IG~~~i~L~~l~--~~~~~~~~~~L~~~~g---~~~G~L~l~l~ 111 (243)
++||++.|+|+++. .......||.|..+.+ +..|+|+|+|.
T Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred ceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 99999999999987 3344568999986443 46799999873
No 5
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.82 E-value=1.8e-19 Score=140.83 Aligned_cols=106 Identities=26% Similarity=0.358 Sum_probs=90.9
Q ss_pred cCceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCCC-ceEEEEEEecCCCCCCc
Q 038128 7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHGV-NEMNLVVWNSNTITGDD 71 (243)
Q Consensus 7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~~-~~L~v~V~d~~~~~~d~ 71 (243)
+.+.|+|+|++|+||+.++ .+||||+ ++.||.|||+|.|.+.... ..|+|+|||++.+++|+
T Consensus 2 ~~~~L~V~Vi~A~~L~~~~---~~DPYv~v~l~~~~~~kT~v~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 2 QVRSLQLNVLEAHKLPVKH---VPHPYCVISLNEVKVARTKVREGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred ceeEEEEEEEEeeCCCCCC---CCCeeEEEEECCEeEEEeecCCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 3568999999999998753 6899999 6789999999999975443 57999999999999999
Q ss_pred eeeEEEEEchHhhhcCCCCCceeecCCC---CccceEEEEEEEEEec
Q 038128 72 FIGSGKVQLTKAITQGYDDNPWPLWTRS---GKHAGEVNIILRCANV 115 (243)
Q Consensus 72 ~IG~~~i~L~~l~~~~~~~~~~~L~~~~---g~~~G~L~l~l~~~~~ 115 (243)
+||++.|+|+++........|+.|...+ .+..|+|+|+|+|.+.
T Consensus 79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 79 EIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred eEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 9999999999988777678899998653 3567999999999874
No 6
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.82 E-value=1.7e-19 Score=140.78 Aligned_cols=105 Identities=21% Similarity=0.367 Sum_probs=92.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEe----------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCceee
Q 038128 11 LEVTVIACKGLKDTEWLSKQDPYVY----------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIG 74 (243)
Q Consensus 11 L~V~V~~A~~L~~~~~~g~~dPYv~----------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG 74 (243)
|.|+|++|+||.. ..+++||||+ ++.||+|||+|.|.+......|.|+|||++.+++|+|||
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG 78 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG 78 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence 6899999999987 6789999997 678999999999999766678999999999998899999
Q ss_pred EEEEEchHhhhcCCCCCceeecCCC---CccceEEEEEEEEEecCC
Q 038128 75 SGKVQLTKAITQGYDDNPWPLWTRS---GKHAGEVNIILRCANVWN 117 (243)
Q Consensus 75 ~~~i~L~~l~~~~~~~~~~~L~~~~---g~~~G~L~l~l~~~~~~~ 117 (243)
++.|+|.++........||.|..+. .+..|+|.|++.|.+..+
T Consensus 79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecccc
Confidence 9999999998777677899998652 457999999999987643
No 7
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.82 E-value=1.6e-19 Score=140.17 Aligned_cols=103 Identities=19% Similarity=0.291 Sum_probs=89.9
Q ss_pred eEEEEEEEeeCCCCCC-CCCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCcee
Q 038128 10 PLEVTVIACKGLKDTE-WLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFI 73 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~~-~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~I 73 (243)
.|+|+|++|+||..++ ..+.+||||+ ++.||+|||+|+|.+.+....|.|+|||++.+++|++|
T Consensus 1 ~l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~i 80 (121)
T cd08401 1 SLKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVI 80 (121)
T ss_pred CeEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceE
Confidence 3789999999999864 4578999999 78999999999999987667999999999999999999
Q ss_pred eEEEEEchHhhhcCCCCCceeecCC--CCccceEEEEEEEE
Q 038128 74 GSGKVQLTKAITQGYDDNPWPLWTR--SGKHAGEVNIILRC 112 (243)
Q Consensus 74 G~~~i~L~~l~~~~~~~~~~~L~~~--~g~~~G~L~l~l~~ 112 (243)
|++.|.|+++........||.|... +++..|+|+|+++|
T Consensus 81 G~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 81 GKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 9999999998876667789999853 34568999999876
No 8
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.82 E-value=2.3e-19 Score=139.19 Aligned_cols=102 Identities=22% Similarity=0.443 Sum_probs=89.2
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCceee
Q 038128 10 PLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDDFIG 74 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~~IG 74 (243)
+|+|+|++|++|..++..+.+||||+ ++.||+|||+|.|.+.+. ...|.|+|||++.++++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 58999999999999998889999998 788999999999999765 457999999999998999999
Q ss_pred EEEEEchHhhhcCCCCCceeecCC------CCccceEEEEEEE
Q 038128 75 SGKVQLTKAITQGYDDNPWPLWTR------SGKHAGEVNIILR 111 (243)
Q Consensus 75 ~~~i~L~~l~~~~~~~~~~~L~~~------~g~~~G~L~l~l~ 111 (243)
++.++|.++........|+.|... +++..|.|+|.|+
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 81 KVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred EEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 999999998776667789998852 4457899988874
No 9
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.82 E-value=2.6e-19 Score=144.13 Aligned_cols=108 Identities=20% Similarity=0.251 Sum_probs=92.4
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEe--------------C-CCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCcee
Q 038128 10 PLEVTVIACKGLKDTEWLSKQDPYVY--------------G-GKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDDFI 73 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~-~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~~I 73 (243)
.|+|+|++|++|..++..+++||||+ + +.||+|||+|+|.+.+. ...|.|+|||++.+++|++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 48999999999999999999999999 3 68999999999999754 45899999999988889999
Q ss_pred eEEEEEchHhhhc----CCCCCceeecCCCC--------ccceEEEEEEEEEecCC
Q 038128 74 GSGKVQLTKAITQ----GYDDNPWPLWTRSG--------KHAGEVNIILRCANVWN 117 (243)
Q Consensus 74 G~~~i~L~~l~~~----~~~~~~~~L~~~~g--------~~~G~L~l~l~~~~~~~ 117 (243)
|++.|+|+++... .....||.|....+ +..|+|+|+|+|....+
T Consensus 81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~ 136 (150)
T cd04019 81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYH 136 (150)
T ss_pred EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcce
Confidence 9999999998643 23468999986543 56799999999997655
No 10
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.82 E-value=2.2e-19 Score=140.25 Aligned_cols=104 Identities=20% Similarity=0.309 Sum_probs=89.4
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCC----CceEEEEEEecCCCC-CC
Q 038128 10 PLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHG----VNEMNLVVWNSNTIT-GD 70 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~----~~~L~v~V~d~~~~~-~d 70 (243)
+|+|+|++|++|...+..+.+||||+ ++.||+|||+|.|.+.+. ...|+|+|||++.++ +|
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 58999999999999998889999998 789999999999999643 247999999999886 79
Q ss_pred ceeeEEEEEchHhhh-cCCCCCceeecCCC--CccceEEEEEEEEE
Q 038128 71 DFIGSGKVQLTKAIT-QGYDDNPWPLWTRS--GKHAGEVNIILRCA 113 (243)
Q Consensus 71 ~~IG~~~i~L~~l~~-~~~~~~~~~L~~~~--g~~~G~L~l~l~~~ 113 (243)
+|||++.|+|+++.. ......||.|..+. ++.+|+|+|++.|+
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 999999999999873 34456899998653 35799999999886
No 11
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.81 E-value=3.3e-19 Score=139.91 Aligned_cols=104 Identities=26% Similarity=0.415 Sum_probs=90.6
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEe---------------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCC
Q 038128 10 PLEVTVIACKGLKDTEWLSKQDPYVY---------------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTIT 68 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~~~~g~~dPYv~---------------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~ 68 (243)
+|+|+|++|++|..++..+++||||+ ++.||+|||+|.|.+......|.|+|||++.++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 58999999999999998899999986 567999999999999776678999999999998
Q ss_pred CCceeeEEEEEchHhhhcCC------CCCceeecCC--CCccceEEEEEEEEE
Q 038128 69 GDDFIGSGKVQLTKAITQGY------DDNPWPLWTR--SGKHAGEVNIILRCA 113 (243)
Q Consensus 69 ~d~~IG~~~i~L~~l~~~~~------~~~~~~L~~~--~g~~~G~L~l~l~~~ 113 (243)
+|++||++.|+|.++..... ...||.|... .++..|+|+|+++|.
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 99999999999999876532 3489999854 346799999999983
No 12
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.81 E-value=2.4e-19 Score=140.30 Aligned_cols=99 Identities=21% Similarity=0.426 Sum_probs=86.8
Q ss_pred eEEEEEEEeeC---CCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCC----
Q 038128 10 PLEVTVIACKG---LKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTIT---- 68 (243)
Q Consensus 10 ~L~V~V~~A~~---L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~---- 68 (243)
.|+|+|++|++ |..++..+++||||+ +++||+|||+|.|.+.+....|+|+|||++.++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence 48999999999 888999999999999 688999999999999876678999999999873
Q ss_pred --CCceeeEEEEEchHhhhcCCCCCceeecCCC---CccceEEEE
Q 038128 69 --GDDFIGSGKVQLTKAITQGYDDNPWPLWTRS---GKHAGEVNI 108 (243)
Q Consensus 69 --~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~---g~~~G~L~l 108 (243)
+|++||++.|+|.++..+.....||.|...+ .+..|+|++
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 7999999999999988777778999998654 356788765
No 13
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.81 E-value=4.5e-19 Score=137.97 Aligned_cols=104 Identities=23% Similarity=0.455 Sum_probs=89.9
Q ss_pred ceEEEEEEEeeCCCCCCC--CCCCCcEEe--------------CCCCCcccceEEEEeeC-CCceEEEEEEecCCCCCCc
Q 038128 9 QPLEVTVIACKGLKDTEW--LSKQDPYVY--------------GGKNPTFQEKFMFPLIH-GVNEMNLVVWNSNTITGDD 71 (243)
Q Consensus 9 ~~L~V~V~~A~~L~~~~~--~g~~dPYv~--------------~~~nP~WnE~f~f~i~~-~~~~L~v~V~d~~~~~~d~ 71 (243)
+.|+|+|++|++|...+. .+.+||||+ ++.||+|||+|.|.+.+ ....|+|+|||++.+++|+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 579999999999999888 889999998 78999999999999976 4668999999999998899
Q ss_pred eeeEEEEEchHhhh---cCCCCCceeecCCC----CccceEEEEEEEE
Q 038128 72 FIGSGKVQLTKAIT---QGYDDNPWPLWTRS----GKHAGEVNIILRC 112 (243)
Q Consensus 72 ~IG~~~i~L~~l~~---~~~~~~~~~L~~~~----g~~~G~L~l~l~~ 112 (243)
+||+++|.|.++.. ......|+.|..++ .+..|+|+|+++|
T Consensus 81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 99999999999874 23346899998653 2478999999975
No 14
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.81 E-value=4.3e-19 Score=136.08 Aligned_cols=100 Identities=22% Similarity=0.362 Sum_probs=88.9
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCceee
Q 038128 10 PLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDDFIG 74 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~~IG 74 (243)
.|+|+|++|++|...+..+.+||||+ ++.||+|||+|.|.+.+. ...|+|+|||++.+++|++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 48999999999999998899999998 789999999999999765 568999999999998999999
Q ss_pred EEEEEchHhhhcCCCCCceeecCCCCccceEEEEEEEEE
Q 038128 75 SGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCA 113 (243)
Q Consensus 75 ~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l~l~~~ 113 (243)
++.+.|+++........|+.|... .|+|++.++|.
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~~~----~G~~~~~~~~~ 115 (116)
T cd08376 81 RCEIDLSALPREQTHSLELELEDG----EGSLLLLLTLT 115 (116)
T ss_pred EEEEeHHHCCCCCceEEEEEccCC----CcEEEEEEEec
Confidence 999999998877777789999742 59999998874
No 15
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.80 E-value=5.9e-19 Score=136.45 Aligned_cols=106 Identities=28% Similarity=0.389 Sum_probs=89.0
Q ss_pred ceEEEEEEEeeCCCCCCC-CCCCCcEEe----------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCc
Q 038128 9 QPLEVTVIACKGLKDTEW-LSKQDPYVY----------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDD 71 (243)
Q Consensus 9 ~~L~V~V~~A~~L~~~~~-~g~~dPYv~----------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~ 71 (243)
+.|+|+|++|++|+..+. .+.+||||+ ++.||+|||+|.|.+.+....|.|+|||++.+++|+
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~ 81 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDK 81 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCc
Confidence 579999999999997653 456899986 667999999999999866778999999999998899
Q ss_pred eeeEEEEEchHhhhcCCCCCceeecCCCCccceEEEEEEEEEe
Q 038128 72 FIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCAN 114 (243)
Q Consensus 72 ~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l~l~~~~ 114 (243)
+||+++++|.++........++.....+++..|+|+|+|+|.+
T Consensus 82 ~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 82 LIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred eeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence 9999999999998776554444333467788999999999964
No 16
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.80 E-value=1.6e-18 Score=133.28 Aligned_cols=102 Identities=20% Similarity=0.364 Sum_probs=89.5
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCceee
Q 038128 9 QPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIG 74 (243)
Q Consensus 9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG 74 (243)
+.|+|+|++|++|..++..+.+||||+ ++.||.|||+|.|.+.+....|.|+|||++.++++++||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG 80 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence 579999999999999998899999998 678999999999999776778999999999988899999
Q ss_pred EEEEEchHhhhcCCCCCceeecCCC--CccceEEEEEEEE
Q 038128 75 SGKVQLTKAITQGYDDNPWPLWTRS--GKHAGEVNIILRC 112 (243)
Q Consensus 75 ~~~i~L~~l~~~~~~~~~~~L~~~~--g~~~G~L~l~l~~ 112 (243)
++.++|.++... ...|+.|.... .+..|+|.|++.|
T Consensus 81 ~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 81 KVAIPLLSIKNG--ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred EEEEEHHHCCCC--CceEEECcccCCCCceeeEEEEEEEe
Confidence 999999987543 35799988653 3579999999987
No 17
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.80 E-value=1.8e-18 Score=137.10 Aligned_cols=102 Identities=21% Similarity=0.327 Sum_probs=86.2
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCce
Q 038128 8 GQPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDDF 72 (243)
Q Consensus 8 ~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~~ 72 (243)
.+.|+|+|++|++|...+..+++||||+ ++.||.|||+|+|.+.+. ...|.|+|||++.+++|++
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~ 93 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDF 93 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCe
Confidence 4689999999999999999999999998 789999999999999764 4579999999999989999
Q ss_pred eeEEEEEchHhhhcCC--CC---CceeecCCCCccceEEEEEEEE
Q 038128 73 IGSGKVQLTKAITQGY--DD---NPWPLWTRSGKHAGEVNIILRC 112 (243)
Q Consensus 73 IG~~~i~L~~l~~~~~--~~---~~~~L~~~~g~~~G~L~l~l~~ 112 (243)
||++.|.|.+++.... .. .|+.| +++.+|+|+|+|+|
T Consensus 94 lG~~~i~l~~l~~~~~~~~~~~~~~~~~---~~~~~g~i~l~~~~ 135 (136)
T cd08375 94 LGRTEIRVADILKETKESKGPITKRLLL---HEVPTGEVVVKLDL 135 (136)
T ss_pred eEEEEEEHHHhccccccCCCcEEEEecc---ccccceeEEEEEEe
Confidence 9999999999886321 12 22333 46778999999987
No 18
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.79 E-value=1.1e-18 Score=141.58 Aligned_cols=108 Identities=18% Similarity=0.337 Sum_probs=92.7
Q ss_pred CccCceEEEEEEEeeCCCCCC------------------------------CCCCCCcEEe---------------CCCC
Q 038128 5 NVQGQPLEVTVIACKGLKDTE------------------------------WLSKQDPYVY---------------GGKN 39 (243)
Q Consensus 5 ~~~~~~L~V~V~~A~~L~~~~------------------------------~~g~~dPYv~---------------~~~n 39 (243)
-+..++|+|+|++|++|.++| ..+++||||+ ++.|
T Consensus 3 ~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~n 82 (158)
T cd04015 3 VLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSEN 82 (158)
T ss_pred eEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCC
Confidence 356899999999999999887 2456899999 6789
Q ss_pred CcccceEEEEeeCCCceEEEEEEecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCC---ccceEEEEEEEEE
Q 038128 40 PTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSG---KHAGEVNIILRCA 113 (243)
Q Consensus 40 P~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g---~~~G~L~l~l~~~ 113 (243)
|+|||+|.|.+.+....|+|+|||++.++ +++||++.|+|+++......+.|+.|....+ +..++|+|+++|.
T Consensus 83 P~WnE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 83 PVWNESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred CccceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 99999999999877778999999999885 7899999999999987777789999986544 3568999999984
No 19
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.79 E-value=1.7e-18 Score=134.29 Aligned_cols=102 Identities=22% Similarity=0.309 Sum_probs=88.5
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCceee
Q 038128 10 PLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIG 74 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG 74 (243)
.|.|+|++|++|..++..+++||||+ ++.||+|||+|.|.+.+....|.|+|||++.+++|++||
T Consensus 1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG 80 (121)
T cd04054 1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIG 80 (121)
T ss_pred CEEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEE
Confidence 48999999999999999999999997 788999999999999876778999999999999999999
Q ss_pred EEEEEchHhhhcC-CCCCceeecCC--CCccceEEEEEEE
Q 038128 75 SGKVQLTKAITQG-YDDNPWPLWTR--SGKHAGEVNIILR 111 (243)
Q Consensus 75 ~~~i~L~~l~~~~-~~~~~~~L~~~--~g~~~G~L~l~l~ 111 (243)
++.+.++++.... ....|+.|... .++..|+|+|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 81 KVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 9999999886532 35689999753 3457899999876
No 20
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.79 E-value=1.2e-18 Score=134.47 Aligned_cols=100 Identities=22% Similarity=0.303 Sum_probs=86.7
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEe-----------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCc
Q 038128 10 PLEVTVIACKGLKDTEWLSKQDPYVY-----------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDD 71 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~ 71 (243)
.|+|+|++|++|+..+..+++||||+ ++.||+|||+|.|.+... ...|+|+|||++.+ +|+
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~ 79 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDD 79 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCc
Confidence 48999999999999988899999998 567999999999999654 44799999999998 899
Q ss_pred eeeEEEEEchHhhhcCCCCCceeecCCCCccceEEEEEEEEE
Q 038128 72 FIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCA 113 (243)
Q Consensus 72 ~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l~l~~~ 113 (243)
+||++.++|.++........|+.|.. +.+|+|++++.++
T Consensus 80 ~iG~~~~~l~~l~~g~~~~~~~~L~~---~~~g~l~~~~~~~ 118 (119)
T cd04036 80 HLGTVLFDVSKLKLGEKVRVTFSLNP---QGKEELEVEFLLE 118 (119)
T ss_pred ccEEEEEEHHHCCCCCcEEEEEECCC---CCCceEEEEEEee
Confidence 99999999999877766778999874 2578888888774
No 21
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.79 E-value=4.6e-19 Score=142.49 Aligned_cols=84 Identities=26% Similarity=0.447 Sum_probs=77.9
Q ss_pred cCceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCce
Q 038128 7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDF 72 (243)
Q Consensus 7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~ 72 (243)
..+.|+|+|++|.||..+|+.+++||||+ +++||+|||+|+|.|.+....|+++|||+|.|+.|||
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~ 83 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDF 83 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccc
Confidence 35789999999999999999899999999 8999999999999999999999999999999999999
Q ss_pred eeEEEEEchHhhhcCCCC
Q 038128 73 IGSGKVQLTKAITQGYDD 90 (243)
Q Consensus 73 IG~~~i~L~~l~~~~~~~ 90 (243)
||+++|+|..++......
T Consensus 84 mG~A~I~l~p~~~~~~~~ 101 (168)
T KOG1030|consen 84 MGEATIPLKPLLEAQKMD 101 (168)
T ss_pred cceeeeccHHHHHHhhhh
Confidence 999999999998765433
No 22
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.79 E-value=1.7e-18 Score=134.43 Aligned_cols=98 Identities=24% Similarity=0.429 Sum_probs=84.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeC-CCceEEEEEEecCCCCCCceeeE
Q 038128 11 LEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIH-GVNEMNLVVWNSNTITGDDFIGS 75 (243)
Q Consensus 11 L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~-~~~~L~v~V~d~~~~~~d~~IG~ 75 (243)
|+|+|++|+||..+ ++||||+ ++.||+|||+|+|.+.+ ....|+|+|||++.+ +|++||+
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~ 76 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGG 76 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeee
Confidence 89999999999877 6899998 68899999999999876 456899999999987 7999999
Q ss_pred EEEEchHhhhcC-----CCCCceeecCCCC-ccceEEEEEEEEE
Q 038128 76 GKVQLTKAITQG-----YDDNPWPLWTRSG-KHAGEVNIILRCA 113 (243)
Q Consensus 76 ~~i~L~~l~~~~-----~~~~~~~L~~~~g-~~~G~L~l~l~~~ 113 (243)
+.|+|+++.... ....||.|...++ +.+|+|+|+|.|.
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 999999986543 2358999987654 7889999999984
No 23
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.79 E-value=1e-18 Score=135.77 Aligned_cols=99 Identities=30% Similarity=0.491 Sum_probs=88.1
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEe----------------CCCCCcccceEEEEeeCC-----CceEEEEEEecCCCC
Q 038128 10 PLEVTVIACKGLKDTEWLSKQDPYVY----------------GGKNPTFQEKFMFPLIHG-----VNEMNLVVWNSNTIT 68 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~~~~g~~dPYv~----------------~~~nP~WnE~f~f~i~~~-----~~~L~v~V~d~~~~~ 68 (243)
+|+|+|++|++|...+..+++||||+ ++.||+|||+|.|.+.+. ...|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 58999999999999998899999998 367999999999999765 468999999999988
Q ss_pred CCceeeEEEEEchHhhhcCCC-----CCceeecCCCCccceEEEE
Q 038128 69 GDDFIGSGKVQLTKAITQGYD-----DNPWPLWTRSGKHAGEVNI 108 (243)
Q Consensus 69 ~d~~IG~~~i~L~~l~~~~~~-----~~~~~L~~~~g~~~G~L~l 108 (243)
+|++||++.|+|.+++..... ..||.|...+++..|.|+|
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 899999999999999876543 5789999888999999875
No 24
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.77 E-value=5.2e-18 Score=130.58 Aligned_cols=100 Identities=24% Similarity=0.394 Sum_probs=86.9
Q ss_pred ceEEEEEEEeeCCCCCCC------CCCCCcEEe--------------CCCCCcccceEEEEeeC-CCceEEEEEEecCCC
Q 038128 9 QPLEVTVIACKGLKDTEW------LSKQDPYVY--------------GGKNPTFQEKFMFPLIH-GVNEMNLVVWNSNTI 67 (243)
Q Consensus 9 ~~L~V~V~~A~~L~~~~~------~g~~dPYv~--------------~~~nP~WnE~f~f~i~~-~~~~L~v~V~d~~~~ 67 (243)
+.|+|+|++|+||...+. .+.+||||+ ++.||+|||+|.|.+.+ ....|+|+|||++.+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 579999999999998774 357999998 78899999999999965 456899999999988
Q ss_pred CCCceeeEEEEEchHhhhcCCCCCceeecCCCCccceEEEEEEEE
Q 038128 68 TGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRC 112 (243)
Q Consensus 68 ~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l~l~~ 112 (243)
+|++||++.|+|.++...+....||.|... ..|+|+|+++|
T Consensus 81 -~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~---~~G~~~~~~~~ 121 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV---KSGRLHLKLEW 121 (121)
T ss_pred -CCCcEEEEEEEHHHhcccCccceEEECcCC---CCceEEEEEeC
Confidence 899999999999999877777889999742 67999999875
No 25
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.76 E-value=1.4e-17 Score=130.91 Aligned_cols=101 Identities=23% Similarity=0.391 Sum_probs=87.8
Q ss_pred CceEEEEEEEeeCCCCCCCC----------CCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEE
Q 038128 8 GQPLEVTVIACKGLKDTEWL----------SKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVW 62 (243)
Q Consensus 8 ~~~L~V~V~~A~~L~~~~~~----------g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~ 62 (243)
.+.|+|+|++|++|...+.. +.+||||+ ++.||+|||+|+|.+. ..+.|.|+||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence 46799999999999988762 57999999 6889999999999997 4578999999
Q ss_pred ecCCCCCCceeeEEEEEchHhhh--cCCCCCceeecCCCCccceEEEEEEEEEe
Q 038128 63 NSNTITGDDFIGSGKVQLTKAIT--QGYDDNPWPLWTRSGKHAGEVNIILRCAN 114 (243)
Q Consensus 63 d~~~~~~d~~IG~~~i~L~~l~~--~~~~~~~~~L~~~~g~~~G~L~l~l~~~~ 114 (243)
|++.+++|++||++.|.|+++.. ......|+.|. ..|+|+|+++|.-
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~-----~~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE-----PQGKLHVKIELKG 130 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc-----CCcEEEEEEEEec
Confidence 99988889999999999999887 34567899996 4699999999875
No 26
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.76 E-value=6.7e-18 Score=131.28 Aligned_cols=89 Identities=26% Similarity=0.413 Sum_probs=78.2
Q ss_pred ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEe-eC---CCceEEEEEE
Q 038128 6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPL-IH---GVNEMNLVVW 62 (243)
Q Consensus 6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i-~~---~~~~L~v~V~ 62 (243)
...++|+|+|++|+||..++ .+.+||||+ ++.||+|||+|+|.+ .. ....|+|+||
T Consensus 10 y~~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~ 88 (122)
T cd08381 10 YKNGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVW 88 (122)
T ss_pred EeCCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEE
Confidence 34789999999999999999 889999999 778999999999997 32 2457999999
Q ss_pred ecCCCCCCceeeEEEEEchHhhhcCCCCCceee
Q 038128 63 NSNTITGDDFIGSGKVQLTKAITQGYDDNPWPL 95 (243)
Q Consensus 63 d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L 95 (243)
|++.+++|++||++.|+|.++........||.|
T Consensus 89 d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 89 SHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred eCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 999999999999999999998876666788876
No 27
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.75 E-value=1e-17 Score=130.82 Aligned_cols=104 Identities=22% Similarity=0.395 Sum_probs=88.2
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCcee
Q 038128 8 GQPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFI 73 (243)
Q Consensus 8 ~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~I 73 (243)
...|+|+|++|++|...+..+++||||+ ++.||+|||+|.|.+.+....|+|+|||++.+ +|++|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~l 80 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFL 80 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCce
Confidence 3579999999999999999999999998 78999999999999987777899999999987 58999
Q ss_pred eEEEEEchHhhhcCCCCCceeecC----CCCccceEEEEEEEEEe
Q 038128 74 GSGKVQLTKAITQGYDDNPWPLWT----RSGKHAGEVNIILRCAN 114 (243)
Q Consensus 74 G~~~i~L~~l~~~~~~~~~~~L~~----~~g~~~G~L~l~l~~~~ 114 (243)
|++++.+.++. .....+|.|.. .+++..|+|.|++++.+
T Consensus 81 G~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 81 GQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred EEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 99999998743 33456777753 34578999999998765
No 28
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.75 E-value=9e-18 Score=134.48 Aligned_cols=93 Identities=22% Similarity=0.368 Sum_probs=80.8
Q ss_pred cCceEEEEEEEeeCCCCCC-CCCCCCcEEe-------------------CCCCCcccceEEEEeeCCCceEEEEEE-ecC
Q 038128 7 QGQPLEVTVIACKGLKDTE-WLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHGVNEMNLVVW-NSN 65 (243)
Q Consensus 7 ~~~~L~V~V~~A~~L~~~~-~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~~~~L~v~V~-d~~ 65 (243)
+.+.|+|+|++|+||...+ ..+.+||||+ +++||+|||+|+|.+......|.|+|| |++
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~ 106 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG 106 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence 5689999999999998764 5678999999 789999999999999866668999999 678
Q ss_pred CCCCCceeeEEEEEchHhhhcCCCCCceeecCCC
Q 038128 66 TITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRS 99 (243)
Q Consensus 66 ~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~ 99 (243)
.+++++|||++.|+|+++........||.|....
T Consensus 107 ~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 107 RMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS 140 (146)
T ss_pred CCCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence 8888999999999999986666667899998543
No 29
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.75 E-value=4.4e-18 Score=131.15 Aligned_cols=89 Identities=13% Similarity=0.183 Sum_probs=74.4
Q ss_pred CCccCceEEEEEEEeeCCCCCCCCCCCCcEEe------------------CCCCCcccceEEEEeeCC---CceEEEEEE
Q 038128 4 ANVQGQPLEVTVIACKGLKDTEWLSKQDPYVY------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVW 62 (243)
Q Consensus 4 ~~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~ 62 (243)
+....+.|+|+|++|+||+ ..+.+||||+ +++||+|||+|.|.|... ...|.|+||
T Consensus 9 Y~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~ 85 (118)
T cd08677 9 YDKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLR 85 (118)
T ss_pred EcCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEE
Confidence 3557889999999999998 2466999999 799999999999999643 447999999
Q ss_pred ecCCCCCCceeeEEEEEchHhhhcCCCCCceee
Q 038128 63 NSNTITGDDFIGSGKVQLTKAITQGYDDNPWPL 95 (243)
Q Consensus 63 d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L 95 (243)
|+|++++|++||++.+.|+++........|.+|
T Consensus 86 d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 86 CCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred eCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 999999999999999999987555444556543
No 30
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.75 E-value=1.7e-17 Score=129.01 Aligned_cols=101 Identities=15% Similarity=0.302 Sum_probs=84.8
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCC--Cce
Q 038128 10 PLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITG--DDF 72 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~--d~~ 72 (243)
.|+|+|++|++|..++.++++||||+ ++.||+|||+|+|.+.. ...|+|+|||++.+++ |+|
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCce
Confidence 48999999999999999999999998 78899999999999975 6789999999998875 579
Q ss_pred eeEEEEEchHhhhcCCC-CCceeecCCC----CccceEEEEEEE
Q 038128 73 IGSGKVQLTKAITQGYD-DNPWPLWTRS----GKHAGEVNIILR 111 (243)
Q Consensus 73 IG~~~i~L~~l~~~~~~-~~~~~L~~~~----g~~~G~L~l~l~ 111 (243)
||++.|+|++++..... ..|+.|...+ +...|+|.++++
T Consensus 80 lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~~ 123 (123)
T cd08382 80 LGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSLS 123 (123)
T ss_pred EeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEeC
Confidence 99999999998765433 5688886443 345788888763
No 31
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.75 E-value=2.9e-17 Score=127.72 Aligned_cols=102 Identities=18% Similarity=0.258 Sum_probs=87.4
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEe-----------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCc
Q 038128 10 PLEVTVIACKGLKDTEWLSKQDPYVY-----------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDD 71 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~ 71 (243)
+|+|+|++|++|...+..++.||||+ ++.||+|||+|.|.+... ...|.|+|||++.+++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 68999999999999998899999997 578999999999999764 568999999999988899
Q ss_pred eeeEEEEEchHhhhcC---CCCCceeecCCCCccceEEEEEEEEEecC
Q 038128 72 FIGSGKVQLTKAITQG---YDDNPWPLWTRSGKHAGEVNIILRCANVW 116 (243)
Q Consensus 72 ~IG~~~i~L~~l~~~~---~~~~~~~L~~~~g~~~G~L~l~l~~~~~~ 116 (243)
+||++.+.|.++.... ....|+.|. ..|+|+|++.+..++
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~-----~~g~i~l~~~~~~~~ 124 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLD-----TQGRLLLRVSMEGER 124 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcC-----CCCeEEEEEEEeeec
Confidence 9999999999875432 345788886 368999999887654
No 32
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.75 E-value=1e-17 Score=134.61 Aligned_cols=89 Identities=29% Similarity=0.434 Sum_probs=75.5
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeC--------------C--C
Q 038128 10 PLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIH--------------G--V 54 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~--------------~--~ 54 (243)
+|+|+|++|+||.. ..+.+||||+ ++.||+|||+|+|.+.. . .
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 58999999999987 4678999988 67899999999999941 1 2
Q ss_pred ceEEEEEEecCCCCCCceeeEEEEEchHhhhc-CCCCCceeecCCCC
Q 038128 55 NEMNLVVWNSNTITGDDFIGSGKVQLTKAITQ-GYDDNPWPLWTRSG 100 (243)
Q Consensus 55 ~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~-~~~~~~~~L~~~~g 100 (243)
..|+|+|||++.+++|+|||++.|+|.++... .....||.|..++.
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~ 125 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREE 125 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCccc
Confidence 36999999999988999999999999998776 56678999986543
No 33
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=2.9e-17 Score=128.11 Aligned_cols=101 Identities=22% Similarity=0.352 Sum_probs=88.6
Q ss_pred EEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeC---CCceEEEEEEecCCCCCCceeeEEE
Q 038128 15 VIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIH---GVNEMNLVVWNSNTITGDDFIGSGK 77 (243)
Q Consensus 15 V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~---~~~~L~v~V~d~~~~~~d~~IG~~~ 77 (243)
|++|++|.. +.+++||||+ ++.||+|||+|.|.+.+ ....|+|+|||++.+++|++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 789999998 6789999998 77899999999999964 3568999999999998999999999
Q ss_pred EEchHhhhcCCCCCceeecCCCCc-cceEEEEEEEEEecCC
Q 038128 78 VQLTKAITQGYDDNPWPLWTRSGK-HAGEVNIILRCANVWN 117 (243)
Q Consensus 78 i~L~~l~~~~~~~~~~~L~~~~g~-~~G~L~l~l~~~~~~~ 117 (243)
++|.++........|+.|...+++ ..|+|+|+++|.+...
T Consensus 80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence 999999887777789999866554 5799999999999765
No 34
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.74 E-value=2.9e-17 Score=128.37 Aligned_cols=99 Identities=25% Similarity=0.489 Sum_probs=84.3
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCCCceEEEEEEecCCC--------
Q 038128 10 PLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTI-------- 67 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~-------- 67 (243)
+|+|+|++|++|...+..+++||||+ ++.||+|||+|.|.+......|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence 68999999999999999999999998 78999999999999976667899999999852
Q ss_pred ---CCCceeeEEEEEchHhhhcCCCCCceeecCCCC--ccceEEEEEE
Q 038128 68 ---TGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSG--KHAGEVNIIL 110 (243)
Q Consensus 68 ---~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g--~~~G~L~l~l 110 (243)
++|++||++.|+|.++. +....|+.|..++. +..|+|+|+|
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 46999999999999863 34568999986543 4789998875
No 35
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.74 E-value=1.4e-17 Score=129.18 Aligned_cols=87 Identities=24% Similarity=0.287 Sum_probs=76.1
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEe---------------------CCCCCcccceEEEEeeCC----CceEEEEEEec
Q 038128 10 PLEVTVIACKGLKDTEWLSKQDPYVY---------------------GGKNPTFQEKFMFPLIHG----VNEMNLVVWNS 64 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~~~~g~~dPYv~---------------------~~~nP~WnE~f~f~i~~~----~~~L~v~V~d~ 64 (243)
+|+|+|++|++|...+ .+.+||||+ +++||+|||+|+|.+.+. ...|.|+|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 5899999999999887 489999998 677999999999999642 23699999999
Q ss_pred CCCCCCceeeEEEEEchHhhhcCCCCCceeecC
Q 038128 65 NTITGDDFIGSGKVQLTKAITQGYDDNPWPLWT 97 (243)
Q Consensus 65 ~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~ 97 (243)
+.+++|++||++.|+|.++...+....|+.|..
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 988889999999999999987777778988874
No 36
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.74 E-value=3.5e-17 Score=127.09 Aligned_cols=91 Identities=34% Similarity=0.606 Sum_probs=81.9
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCC----CceEEEEEEecCCCCC
Q 038128 9 QPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHG----VNEMNLVVWNSNTITG 69 (243)
Q Consensus 9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~----~~~L~v~V~d~~~~~~ 69 (243)
++|+|+|++|++|+..+..+++||||+ ++.||+|||+|.|.+... ...|.|+|||++.+++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 579999999999999998899999998 378999999999999765 4679999999999988
Q ss_pred CceeeEEEEEchHhhhcCCCCCceeecCCC
Q 038128 70 DDFIGSGKVQLTKAITQGYDDNPWPLWTRS 99 (243)
Q Consensus 70 d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~ 99 (243)
|++||++.|+|.+++..+....|+.|..+.
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~ 110 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTAELVPAK 110 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCceEeeccc
Confidence 999999999999999888888999998643
No 37
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.73 E-value=2e-17 Score=128.49 Aligned_cols=90 Identities=20% Similarity=0.329 Sum_probs=80.8
Q ss_pred cCceEEEEEEEeeCCCCCCCCCCCCcEEe-----------------CCCCCcccceEEEEeeCC---CceEEEEEEecCC
Q 038128 7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-----------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSNT 66 (243)
Q Consensus 7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~~ 66 (243)
..+.|+|+|++|+||..++..+.+||||+ ++.||+|||+|.|.+... ...|+|+|||++.
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~ 93 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ 93 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC
Confidence 46789999999999999999999999997 778999999999998643 4579999999999
Q ss_pred CCCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128 67 ITGDDFIGSGKVQLTKAITQGYDDNPWPLW 96 (243)
Q Consensus 67 ~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~ 96 (243)
+++|++||++.|.|+++......+.|+.|.
T Consensus 94 ~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 94 FSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCceeEEEEEecccccCCCCcceEEECc
Confidence 989999999999999998777778899886
No 38
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.73 E-value=2.1e-17 Score=128.96 Aligned_cols=91 Identities=26% Similarity=0.449 Sum_probs=79.0
Q ss_pred ccCceEEEEEEEeeCCCCCCCC-CCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEE
Q 038128 6 VQGQPLEVTVIACKGLKDTEWL-SKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVW 62 (243)
Q Consensus 6 ~~~~~L~V~V~~A~~L~~~~~~-g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~ 62 (243)
...+.|+|+|++|+||..++.. +.+||||+ ++.||+|||+|.|.+... ...|.|+||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~ 91 (125)
T cd08393 12 PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVW 91 (125)
T ss_pred CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 3457899999999999999875 78999998 778999999999998642 357999999
Q ss_pred ecCCCCCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128 63 NSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLW 96 (243)
Q Consensus 63 d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~ 96 (243)
|++.++++++||++.|+|.++........||.|.
T Consensus 92 d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 92 HRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred eCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 9999999999999999999986666667888873
No 39
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.73 E-value=2.5e-17 Score=127.83 Aligned_cols=91 Identities=24% Similarity=0.327 Sum_probs=80.6
Q ss_pred ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-----------------CCCCCcccceEEEEeeCC---CceEEEEEEecC
Q 038128 6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-----------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSN 65 (243)
Q Consensus 6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~ 65 (243)
...++|+|+|++|+||..++..+.+||||+ ++.||+|||+|.|.+... ...|+|+|||++
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d 92 (124)
T cd08385 13 FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD 92 (124)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 467899999999999999998899999998 678999999999998642 457999999999
Q ss_pred CCCCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128 66 TITGDDFIGSGKVQLTKAITQGYDDNPWPLW 96 (243)
Q Consensus 66 ~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~ 96 (243)
.+++|++||++.|+|+++........|++|.
T Consensus 93 ~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 93 RFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 9989999999999999987766677898885
No 40
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.73 E-value=6.4e-17 Score=125.40 Aligned_cols=90 Identities=22% Similarity=0.384 Sum_probs=81.3
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCcee
Q 038128 9 QPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFI 73 (243)
Q Consensus 9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~I 73 (243)
+.|+|+|++|++|...+..+++||||+ ++.||+|||+|.|.+.+....|.|+|||++.+++|++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I 80 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL 80 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence 579999999999999998899999998 67899999999999987777999999999999999999
Q ss_pred eEEEEEchHhhhcCCCCCceeecCCC
Q 038128 74 GSGKVQLTKAITQGYDDNPWPLWTRS 99 (243)
Q Consensus 74 G~~~i~L~~l~~~~~~~~~~~L~~~~ 99 (243)
|++++.|.+++.. ..+.||.|.+.+
T Consensus 81 G~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 81 GSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred eEEEEeHHHhhCC-CCCceEEecCCC
Confidence 9999999999876 567899888644
No 41
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.73 E-value=5.2e-17 Score=128.23 Aligned_cols=105 Identities=17% Similarity=0.346 Sum_probs=85.9
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeC----------CCceEEEEEEecC
Q 038128 10 PLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIH----------GVNEMNLVVWNSN 65 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~----------~~~~L~v~V~d~~ 65 (243)
.|+|+|++|++|..++..+++||||+ ++.||+|||+|.|.+.. ....|.|+|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 58999999999999999999999997 78999999999998532 1246999999999
Q ss_pred CCCCCceeeEEEE-EchHhhhc---CCCCCceeecCCCCccceEEEEEEEEEec
Q 038128 66 TITGDDFIGSGKV-QLTKAITQ---GYDDNPWPLWTRSGKHAGEVNIILRCANV 115 (243)
Q Consensus 66 ~~~~d~~IG~~~i-~L~~l~~~---~~~~~~~~L~~~~g~~~G~L~l~l~~~~~ 115 (243)
.+++|++||++.+ ++..+... .....|+.|. +.++..|+|.|++.+.+.
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~-~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY-KGGQSAGELLAAFELIEV 134 (135)
T ss_pred CCCCCccceEEEeeeeeecccCCCCCCCceEEEee-cCCCchhheeEEeEEEEe
Confidence 9999999999987 33333221 3345799997 556789999999999874
No 42
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.73 E-value=3.1e-17 Score=128.04 Aligned_cols=91 Identities=23% Similarity=0.471 Sum_probs=79.2
Q ss_pred ccCceEEEEEEEeeCCCCCCC-CCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEE
Q 038128 6 VQGQPLEVTVIACKGLKDTEW-LSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVW 62 (243)
Q Consensus 6 ~~~~~L~V~V~~A~~L~~~~~-~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~ 62 (243)
-..++|+|+|++|+||...+. .+.+||||+ ++.||+|||+|.|.|... ...|+|+||
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~ 91 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW 91 (125)
T ss_pred CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 367889999999999998764 478999998 678999999999999642 457999999
Q ss_pred ecCCCCCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128 63 NSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLW 96 (243)
Q Consensus 63 d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~ 96 (243)
|++.++++++||++.|.|.++........|+.|.
T Consensus 92 d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 92 HYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred ECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 9999999999999999999987777778898873
No 43
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.72 E-value=2.6e-17 Score=127.49 Aligned_cols=89 Identities=24% Similarity=0.386 Sum_probs=76.7
Q ss_pred ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC--CceEEEEEEec
Q 038128 6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG--VNEMNLVVWNS 64 (243)
Q Consensus 6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~--~~~L~v~V~d~ 64 (243)
...+.|+|+|++|+||..++ .+.+||||+ ++.||+|||+|.|.+... ...|.|+|||+
T Consensus 9 ~~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~ 87 (119)
T cd08685 9 GQNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNK 87 (119)
T ss_pred EcCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence 46789999999999999988 788999999 678999999999998643 34689999999
Q ss_pred CCCC-CCceeeEEEEEchHhhhcCCCCCceee
Q 038128 65 NTIT-GDDFIGSGKVQLTKAITQGYDDNPWPL 95 (243)
Q Consensus 65 ~~~~-~d~~IG~~~i~L~~l~~~~~~~~~~~L 95 (243)
+..+ ++++||++.|+|.++........||.|
T Consensus 88 ~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 88 LSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 8875 478999999999999866666788875
No 44
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.72 E-value=4.2e-17 Score=124.75 Aligned_cols=98 Identities=26% Similarity=0.400 Sum_probs=85.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCceee
Q 038128 11 LEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDDFIG 74 (243)
Q Consensus 11 L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~~IG 74 (243)
|+|+|++|++|...+..+++||||+ ++.+|+|||+|.|.+.+. .+.|.|+|||++.++++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 6899999999999988889999998 778999999999999764 568999999999998999999
Q ss_pred EEEEEchHhhhcCCCCCceeecCCCCccceEEEE
Q 038128 75 SGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNI 108 (243)
Q Consensus 75 ~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l 108 (243)
++.+.|.++........|+.|..+.+...|.|.|
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~g~~~~~~~~~ 114 (115)
T cd04040 81 SAYIDLSDLEPEETTELTLPLDGQGGGKLGAVFL 114 (115)
T ss_pred EEEEEHHHcCCCCcEEEEEECcCCCCccCceEEc
Confidence 9999999988776677889998766677777654
No 45
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.72 E-value=5.5e-17 Score=126.39 Aligned_cols=85 Identities=22% Similarity=0.285 Sum_probs=73.8
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEe-------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCceeeE
Q 038128 9 QPLEVTVIACKGLKDTEWLSKQDPYVY-------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGS 75 (243)
Q Consensus 9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~ 75 (243)
+.|.|+|++|++|..++ ..||||+ ++.||+|||+|.|.+.+....|+|+|||++.+ +|||||+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG~ 77 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRGSQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVGT 77 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCCCCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceEE
Confidence 47999999999997755 3589999 55799999999999988777899999999977 7999999
Q ss_pred EEEEchHhhhcCCC--CCceeecC
Q 038128 76 GKVQLTKAITQGYD--DNPWPLWT 97 (243)
Q Consensus 76 ~~i~L~~l~~~~~~--~~~~~L~~ 97 (243)
+.|+|+++..+... ..||.|..
T Consensus 78 v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 78 VWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred EEEEhHHcccCCCCCCCccEecCh
Confidence 99999999876554 68998884
No 46
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.71 E-value=5e-17 Score=127.51 Aligned_cols=90 Identities=27% Similarity=0.416 Sum_probs=77.3
Q ss_pred ccCceEEEEEEEeeCCCCCCCC-CCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEE
Q 038128 6 VQGQPLEVTVIACKGLKDTEWL-SKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVW 62 (243)
Q Consensus 6 ~~~~~L~V~V~~A~~L~~~~~~-g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~ 62 (243)
...++|+|+|++|+||..++.. +.+||||+ ++.||+|||+|.|.|... ...|.|+||
T Consensus 12 ~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~ 91 (128)
T cd08392 12 FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVW 91 (128)
T ss_pred CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence 3568999999999999998875 88999999 678999999999998643 458999999
Q ss_pred ecCCCCCCceeeEEEEEchHhhhcC---CCCCceee
Q 038128 63 NSNTITGDDFIGSGKVQLTKAITQG---YDDNPWPL 95 (243)
Q Consensus 63 d~~~~~~d~~IG~~~i~L~~l~~~~---~~~~~~~L 95 (243)
|.+.++++++||++.|+|.++.... ....||.|
T Consensus 92 ~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 92 HSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred eCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 9999999999999999999985442 34578877
No 47
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.71 E-value=7.2e-17 Score=123.23 Aligned_cols=85 Identities=25% Similarity=0.402 Sum_probs=73.5
Q ss_pred ceEEEEEEEeeCCCCCCCC-CCCCcEEe-----------------CCCCCcccceEEEEeeCC----CceEEEEEEecCC
Q 038128 9 QPLEVTVIACKGLKDTEWL-SKQDPYVY-----------------GGKNPTFQEKFMFPLIHG----VNEMNLVVWNSNT 66 (243)
Q Consensus 9 ~~L~V~V~~A~~L~~~~~~-g~~dPYv~-----------------~~~nP~WnE~f~f~i~~~----~~~L~v~V~d~~~ 66 (243)
++|+|+|++|++|...+.. +++||||+ ++.||+|||+|.|.+... ...|+|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 5899999999999999987 89999998 678999999999988542 4579999999999
Q ss_pred CCCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128 67 ITGDDFIGSGKVQLTKAITQGYDDNPWPLW 96 (243)
Q Consensus 67 ~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~ 96 (243)
+++|++||+++|+|.+|+. ...|+.+.
T Consensus 81 ~~~dd~lG~~~i~l~~l~~---~~~~~~~~ 107 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE---DRNWMGRR 107 (111)
T ss_pred CCCCCcceEEEEEHHHHhc---CCCCCccc
Confidence 9999999999999999874 33566554
No 48
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.71 E-value=6.3e-17 Score=126.28 Aligned_cols=91 Identities=15% Similarity=0.264 Sum_probs=77.9
Q ss_pred CccCceEEEEEEEeeCCCCCCCCCCCCcEEe--------------------CCCCCcccceEEEEeeCC---CceEEEEE
Q 038128 5 NVQGQPLEVTVIACKGLKDTEWLSKQDPYVY--------------------GGKNPTFQEKFMFPLIHG---VNEMNLVV 61 (243)
Q Consensus 5 ~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V 61 (243)
....+.|+|+|++|+||...+..+.+|+||+ ++.||+|||+|+|.|... ...|.|+|
T Consensus 10 ~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V 89 (124)
T cd08680 10 DSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDV 89 (124)
T ss_pred CCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEE
Confidence 4467899999999999999888888999999 678999999999999643 45899999
Q ss_pred EecCCCCCCceeeEEEEEchHhhhcC-CCCCceee
Q 038128 62 WNSNTITGDDFIGSGKVQLTKAITQG-YDDNPWPL 95 (243)
Q Consensus 62 ~d~~~~~~d~~IG~~~i~L~~l~~~~-~~~~~~~L 95 (243)
||.+.++++++||++.|.|.++.... ....||.|
T Consensus 90 ~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 90 CSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 99999999999999999999984443 35678765
No 49
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.71 E-value=8.4e-17 Score=122.65 Aligned_cols=87 Identities=22% Similarity=0.351 Sum_probs=76.0
Q ss_pred EEEEEEEeeCCCCCCC-CCCCCcEEe--------------CCCCCcc-cceEEEEeeCC---CceEEEEEEecCCCCCCc
Q 038128 11 LEVTVIACKGLKDTEW-LSKQDPYVY--------------GGKNPTF-QEKFMFPLIHG---VNEMNLVVWNSNTITGDD 71 (243)
Q Consensus 11 L~V~V~~A~~L~~~~~-~g~~dPYv~--------------~~~nP~W-nE~f~f~i~~~---~~~L~v~V~d~~~~~~d~ 71 (243)
|+|+|++|++|+.++. .+.+||||+ ++.||+| ||+|.|.+... .+.|+|+|||++.+++|+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 6899999999998874 678999998 7889999 99999999653 358999999999999999
Q ss_pred eeeEEEEEchHhhhc---CCCCCceeecC
Q 038128 72 FIGSGKVQLTKAITQ---GYDDNPWPLWT 97 (243)
Q Consensus 72 ~IG~~~i~L~~l~~~---~~~~~~~~L~~ 97 (243)
+||++.++|.++... ...+.||.|.+
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 999999999999873 34678999874
No 50
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.71 E-value=1.1e-16 Score=124.04 Aligned_cols=90 Identities=23% Similarity=0.406 Sum_probs=76.3
Q ss_pred ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeC----CCceEEEEEE
Q 038128 6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIH----GVNEMNLVVW 62 (243)
Q Consensus 6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~----~~~~L~v~V~ 62 (243)
...++|+|+|++|++|...+..+.+||||+ ++.||+|||+|.|.+.. ....|+|+||
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~ 92 (125)
T cd04031 13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW 92 (125)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence 356789999999999999998889999997 68899999999999643 2457999999
Q ss_pred ecCCCCCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128 63 NSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLW 96 (243)
Q Consensus 63 d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~ 96 (243)
|++.+++|++||+++|+|++.. ......||.|.
T Consensus 93 d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 93 DYDRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred eCCCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 9999988999999999999843 33346788874
No 51
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.71 E-value=1e-16 Score=123.96 Aligned_cols=90 Identities=22% Similarity=0.475 Sum_probs=78.8
Q ss_pred ccCceEEEEEEEeeCCCCCC-CCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEE
Q 038128 6 VQGQPLEVTVIACKGLKDTE-WLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVW 62 (243)
Q Consensus 6 ~~~~~L~V~V~~A~~L~~~~-~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~ 62 (243)
...+.|+|+|++|+||...+ ..+.+||||+ ++.||+|||+|.|.+... ...|.|+||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 35789999999999999988 7788999997 678999999999998653 457999999
Q ss_pred ecCCCCCCceeeEEEEEchHhhhcCCCCCceee
Q 038128 63 NSNTITGDDFIGSGKVQLTKAITQGYDDNPWPL 95 (243)
Q Consensus 63 d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L 95 (243)
|++.++++++||++.|.|.++........||.|
T Consensus 91 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 91 HHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred eCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 999999999999999999998766666788876
No 52
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.70 E-value=1.2e-16 Score=120.76 Aligned_cols=85 Identities=26% Similarity=0.355 Sum_probs=75.0
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCceee
Q 038128 10 PLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDDFIG 74 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~~IG 74 (243)
+|.|+|++|++|+..+..+.+||||+ ++.||+|||+|.|.+.+. ...|+|+|||++. |++||
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 58999999999999888899999999 778999999999999864 5689999999985 88999
Q ss_pred EEEEEchHhhhcC--CCCCceeecC
Q 038128 75 SGKVQLTKAITQG--YDDNPWPLWT 97 (243)
Q Consensus 75 ~~~i~L~~l~~~~--~~~~~~~L~~ 97 (243)
++.|+|.++.... ..+.||.|..
T Consensus 78 ~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 78 SLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred EEEEEHHHhhccccceeeeeEecCC
Confidence 9999999998664 3468999974
No 53
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.70 E-value=2.4e-16 Score=127.35 Aligned_cols=106 Identities=19% Similarity=0.339 Sum_probs=86.8
Q ss_pred eEEEEEEEeeC--CCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---------CceEEE
Q 038128 10 PLEVTVIACKG--LKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---------VNEMNL 59 (243)
Q Consensus 10 ~L~V~V~~A~~--L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---------~~~L~v 59 (243)
.++|+|+.|++ |...+..+..||||+ +++||+|||+|.|.|... ...|+|
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~ 82 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKF 82 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEE
Confidence 45677777777 556666678999998 789999999999999644 235999
Q ss_pred EEEecCCC-CCCceeeEEEEEchHhhhcCCCCCceeecCCCCccceEEEEEEEEEec
Q 038128 60 VVWNSNTI-TGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCANV 115 (243)
Q Consensus 60 ~V~d~~~~-~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l~l~~~~~ 115 (243)
+|||++.| ++|++||++.|+|+.+........|++|+.......|+|+|++++.+.
T Consensus 83 ~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~p 139 (155)
T cd08690 83 EVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLREP 139 (155)
T ss_pred EEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecCC
Confidence 99999986 479999999999999877666677999986555678999999999874
No 54
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.70 E-value=1.3e-16 Score=124.07 Aligned_cols=91 Identities=27% Similarity=0.358 Sum_probs=79.1
Q ss_pred ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEe
Q 038128 6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWN 63 (243)
Q Consensus 6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d 63 (243)
...+.|+|+|++|+||...+..+.+||||+ ++.||+|||+|.|.+... ...|+|+|||
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~ 92 (127)
T cd04030 13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKN 92 (127)
T ss_pred CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence 356899999999999999998899999998 678999999999998543 3579999999
Q ss_pred cCCC--CCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128 64 SNTI--TGDDFIGSGKVQLTKAITQGYDDNPWPLW 96 (243)
Q Consensus 64 ~~~~--~~d~~IG~~~i~L~~l~~~~~~~~~~~L~ 96 (243)
++.+ ++|++||++.|.|+++........||.|.
T Consensus 93 ~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 93 SKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred CCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 9875 67999999999999987766677898874
No 55
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.69 E-value=1.5e-16 Score=123.96 Aligned_cols=91 Identities=21% Similarity=0.271 Sum_probs=78.9
Q ss_pred ccCceEEEEEEEeeCCCCCCCCCCCCcEEe----------------CCCCCcccceEEEE-eeC---CCceEEEEEEecC
Q 038128 6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY----------------GGKNPTFQEKFMFP-LIH---GVNEMNLVVWNSN 65 (243)
Q Consensus 6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~----------------~~~nP~WnE~f~f~-i~~---~~~~L~v~V~d~~ 65 (243)
-..++|+|+|++|+||...+..+.+|+||+ ++.||+|||+|.|. +.. ....|.|+|||++
T Consensus 13 ~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~ 92 (124)
T cd08389 13 PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRGPNPVFNETFTFSRVEPEELNNMALRFRLYGVE 92 (124)
T ss_pred CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccCCCCcccCEEEECCCCHHHhccCEEEEEEEECC
Confidence 456799999999999999998888999988 44899999999998 543 2457999999999
Q ss_pred CCCCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128 66 TITGDDFIGSGKVQLTKAITQGYDDNPWPLW 96 (243)
Q Consensus 66 ~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~ 96 (243)
.++++++||++.|+|+++........|+.|.
T Consensus 93 ~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 93 RMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred CcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 9999999999999999997666677888875
No 56
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.68 E-value=4.3e-16 Score=118.67 Aligned_cols=79 Identities=15% Similarity=0.340 Sum_probs=68.6
Q ss_pred ceEEEEEEEeeCCCCCCCC----CCCCcEEe--------------CCCCCcccceEEEEeeCC--CceEEEEEEecCCCC
Q 038128 9 QPLEVTVIACKGLKDTEWL----SKQDPYVY--------------GGKNPTFQEKFMFPLIHG--VNEMNLVVWNSNTIT 68 (243)
Q Consensus 9 ~~L~V~V~~A~~L~~~~~~----g~~dPYv~--------------~~~nP~WnE~f~f~i~~~--~~~L~v~V~d~~~~~ 68 (243)
+.|.|+|++|++|+..+.. +.+||||+ ++.||+|||+|.|.+.+. ...|.|+|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 5799999999999987643 24899999 789999999999998643 347999999999999
Q ss_pred CCceeeEEEEEchHhhhcC
Q 038128 69 GDDFIGSGKVQLTKAITQG 87 (243)
Q Consensus 69 ~d~~IG~~~i~L~~l~~~~ 87 (243)
+|++||+++|+|.+|+...
T Consensus 81 ~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCcceEEEEEEHHHHHhhC
Confidence 9999999999999998653
No 57
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.68 E-value=2.8e-16 Score=122.01 Aligned_cols=92 Identities=21% Similarity=0.276 Sum_probs=79.6
Q ss_pred CccCceEEEEEEEeeCCCCCCCCCCCCcEEe-----------------CCCCCcccceEEEEeeC----CCceEEEEEEe
Q 038128 5 NVQGQPLEVTVIACKGLKDTEWLSKQDPYVY-----------------GGKNPTFQEKFMFPLIH----GVNEMNLVVWN 63 (243)
Q Consensus 5 ~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~----~~~~L~v~V~d 63 (243)
....++|+|+|++|+||...+..+++||||+ ++.||+|||+|.|.+.. ....|+|+|||
T Consensus 12 ~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d 91 (125)
T cd08386 12 DFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLD 91 (125)
T ss_pred CCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEe
Confidence 3457799999999999999998899999998 67899999999998532 23479999999
Q ss_pred cCCCCCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128 64 SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLW 96 (243)
Q Consensus 64 ~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~ 96 (243)
++.+++|++||+++|+|+++........|+.|.
T Consensus 92 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 92 YDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 999989999999999999987766677888875
No 58
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.68 E-value=2.4e-16 Score=121.91 Aligned_cols=91 Identities=21% Similarity=0.275 Sum_probs=80.2
Q ss_pred ccCceEEEEEEEeeCCCCCC-CCCCCCcEEe-----------------CCCCCcccceEEEEeeCC---CceEEEEEEec
Q 038128 6 VQGQPLEVTVIACKGLKDTE-WLSKQDPYVY-----------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNS 64 (243)
Q Consensus 6 ~~~~~L~V~V~~A~~L~~~~-~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~ 64 (243)
...+.|+|+|++|+||..++ ..+.+||||+ ++.||+|||+|.|.+... ...|.|+|||+
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 90 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDV 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence 45678999999999999988 6788999997 788999999999998643 35799999999
Q ss_pred CCCCCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128 65 NTITGDDFIGSGKVQLTKAITQGYDDNPWPLW 96 (243)
Q Consensus 65 ~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~ 96 (243)
+.++++++||++.|+|+++........|++|.
T Consensus 91 ~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 91 DRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred CcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 99888999999999999998877777898875
No 59
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.66 E-value=1.7e-15 Score=118.19 Aligned_cols=100 Identities=26% Similarity=0.457 Sum_probs=81.1
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCcee
Q 038128 9 QPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFI 73 (243)
Q Consensus 9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~I 73 (243)
.+|+|+|++|+ |...+..+++||||+ ++.+|+|||+|.|.+.+ ...|.|+|||++.+++|++|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEE
Confidence 46999999998 555555788999997 67899999999999864 46899999999999899999
Q ss_pred eEEEEEchHhhhcCCC-----CCceeecCCC---CccceEEEEEE
Q 038128 74 GSGKVQLTKAITQGYD-----DNPWPLWTRS---GKHAGEVNIIL 110 (243)
Q Consensus 74 G~~~i~L~~l~~~~~~-----~~~~~L~~~~---g~~~G~L~l~l 110 (243)
|++++.|.+++..... ..|+.|...+ +...|+|++++
T Consensus 80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 80 GEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999999865331 2467777443 26789988876
No 60
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.66 E-value=8.5e-17 Score=145.47 Aligned_cols=94 Identities=24% Similarity=0.398 Sum_probs=83.5
Q ss_pred CccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeC--CCceEEEEEEe
Q 038128 5 NVQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIH--GVNEMNLVVWN 63 (243)
Q Consensus 5 ~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~--~~~~L~v~V~d 63 (243)
.++...|+|+|.+|+||..+|-+|.+||||+ .++||+|||+|+|.+.. .++.|.|||||
T Consensus 176 ~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWD 255 (683)
T KOG0696|consen 176 HIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWD 255 (683)
T ss_pred EecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEec
Confidence 3567789999999999999999999999999 78999999999999964 46689999999
Q ss_pred cCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCC
Q 038128 64 SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRS 99 (243)
Q Consensus 64 ~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~ 99 (243)
||+.+++||+|..++.|++|.... .+.||.|++.+
T Consensus 256 WDrTsRNDFMGslSFgisEl~K~p-~~GWyKlLsqe 290 (683)
T KOG0696|consen 256 WDRTSRNDFMGSLSFGISELQKAP-VDGWYKLLSQE 290 (683)
T ss_pred ccccccccccceecccHHHHhhcc-hhhHHHHhhhh
Confidence 999999999999999999987654 57899988653
No 61
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.66 E-value=1.5e-15 Score=121.62 Aligned_cols=77 Identities=23% Similarity=0.474 Sum_probs=71.3
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCceee
Q 038128 9 QPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIG 74 (243)
Q Consensus 9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG 74 (243)
+.|+|+|++|+||...+. +.+||||+ ++.||+|||+|.|.+.+....|+|+|||++.+++|++||
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG 80 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG 80 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence 679999999999998887 78999998 788999999999999887778999999999999999999
Q ss_pred EEEEEchHhhhc
Q 038128 75 SGKVQLTKAITQ 86 (243)
Q Consensus 75 ~~~i~L~~l~~~ 86 (243)
++.++|.+++..
T Consensus 81 ~a~i~l~~l~~~ 92 (145)
T cd04038 81 EAEIDLEPLVEA 92 (145)
T ss_pred EEEEEHHHhhhh
Confidence 999999998754
No 62
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.66 E-value=6.6e-16 Score=121.04 Aligned_cols=91 Identities=25% Similarity=0.346 Sum_probs=74.2
Q ss_pred CccCceEEEEEEEeeCCCCCCCC-CCCCcEEe-----------------CCCCCcccceEEEE-eeC---CCceEEEEEE
Q 038128 5 NVQGQPLEVTVIACKGLKDTEWL-SKQDPYVY-----------------GGKNPTFQEKFMFP-LIH---GVNEMNLVVW 62 (243)
Q Consensus 5 ~~~~~~L~V~V~~A~~L~~~~~~-g~~dPYv~-----------------~~~nP~WnE~f~f~-i~~---~~~~L~v~V~ 62 (243)
.....+|+|+|++|+||+..+.. +.+||||+ ++.||+|||+|.|. +.. ....|+|+||
T Consensus 12 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~ 91 (128)
T cd08388 12 NSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL 91 (128)
T ss_pred ECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence 34577999999999999998876 88999998 78999999999994 432 2347999999
Q ss_pred ecCCCCCCceeeEEEEEchHhhhc--CCCCCceee
Q 038128 63 NSNTITGDDFIGSGKVQLTKAITQ--GYDDNPWPL 95 (243)
Q Consensus 63 d~~~~~~d~~IG~~~i~L~~l~~~--~~~~~~~~L 95 (243)
|++.+++|++||++.|+|.++... +....|..|
T Consensus 92 d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 92 SFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred EcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 999999999999999999987544 233455554
No 63
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.65 E-value=4.5e-16 Score=122.92 Aligned_cols=93 Identities=20% Similarity=0.289 Sum_probs=78.4
Q ss_pred cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeC---CCceEEEEEEec
Q 038128 7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIH---GVNEMNLVVWNS 64 (243)
Q Consensus 7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~---~~~~L~v~V~d~ 64 (243)
..+.|.|+|++|+||...+..+.+||||+ ++.||+|||+|.|.+.. ....|+|+|||+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~ 92 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDS 92 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEEC
Confidence 56789999999999999998999999998 67899999999999864 234699999999
Q ss_pred CCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCc
Q 038128 65 NTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGK 101 (243)
Q Consensus 65 ~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~ 101 (243)
+.++++++||++.|.+.. .......|++|....++
T Consensus 93 d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~ 127 (136)
T cd08404 93 DRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRR 127 (136)
T ss_pred CCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCC
Confidence 999999999999999987 33445678888754443
No 64
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.65 E-value=6.5e-16 Score=125.90 Aligned_cols=90 Identities=20% Similarity=0.323 Sum_probs=77.6
Q ss_pred cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeC----CCceEEEEEEe
Q 038128 7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIH----GVNEMNLVVWN 63 (243)
Q Consensus 7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~----~~~~L~v~V~d 63 (243)
..++|+|+|++|+||...+..+.+||||+ ++.||+|||+|.|.+.. ....|+|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 35789999999999999998899999997 67899999999998632 23479999999
Q ss_pred cCCCCCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128 64 SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLW 96 (243)
Q Consensus 64 ~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~ 96 (243)
++.+++|+|||++.|.+.++...+....|+.|.
T Consensus 105 ~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 105 HDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred CCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence 999989999999999999987666667777765
No 65
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.65 E-value=1.1e-15 Score=119.63 Aligned_cols=93 Identities=28% Similarity=0.409 Sum_probs=81.6
Q ss_pred CccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC--CceEEEEEEe
Q 038128 5 NVQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG--VNEMNLVVWN 63 (243)
Q Consensus 5 ~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~--~~~L~v~V~d 63 (243)
+++.++|+|+|++|++|...+..+.+||||+ ++.+|+|||+|.|.+... ...|+|+|||
T Consensus 9 ~~~~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d 88 (131)
T cd04026 9 SVKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWD 88 (131)
T ss_pred EECCCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEE
Confidence 5677999999999999999888888999997 578999999999998654 4579999999
Q ss_pred cCCCCCCceeeEEEEEchHhhhcCCCCCceeecCC
Q 038128 64 SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTR 98 (243)
Q Consensus 64 ~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~ 98 (243)
++.++++++||+++++|.++... ....||.|.+.
T Consensus 89 ~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 89 WDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 99988899999999999998754 56789999854
No 66
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.65 E-value=4.4e-16 Score=122.32 Aligned_cols=94 Identities=22% Similarity=0.405 Sum_probs=78.6
Q ss_pred CccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEE
Q 038128 5 NVQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVW 62 (243)
Q Consensus 5 ~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~ 62 (243)
....+.|.|+|++|++|...+..+.+||||+ ++.||+|||+|.|.+... ...|+|+||
T Consensus 9 ~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~ 88 (133)
T cd08384 9 NTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVW 88 (133)
T ss_pred cCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEE
Confidence 3467899999999999999998899999987 678999999999998643 357999999
Q ss_pred ecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCC
Q 038128 63 NSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSG 100 (243)
Q Consensus 63 d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g 100 (243)
|++.+++|++||++.|.+.. .......|++++...+
T Consensus 89 d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~ 124 (133)
T cd08384 89 DKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPD 124 (133)
T ss_pred eCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCC
Confidence 99998889999999999985 2334457888875433
No 67
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.65 E-value=1.4e-15 Score=116.49 Aligned_cols=97 Identities=22% Similarity=0.281 Sum_probs=76.8
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCC---CceEEEEEEecCCCCCCc
Q 038128 10 PLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSNTITGDD 71 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~~~~~d~ 71 (243)
.|+|+|++|++|+.+ +.+||||+ + .||+|||+|.|.+.+. ...|.|.+||++.++++.
T Consensus 1 ~L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~ 76 (117)
T cd08383 1 SLRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDI 76 (117)
T ss_pred CeEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCee
Confidence 378999999999876 68999998 5 8999999999999763 356889999988776666
Q ss_pred eeeEEEEEchHhhhcCCCCCceeecCCCC--ccceEEEEEEEE
Q 038128 72 FIGSGKVQLTKAITQGYDDNPWPLWTRSG--KHAGEVNIILRC 112 (243)
Q Consensus 72 ~IG~~~i~L~~l~~~~~~~~~~~L~~~~g--~~~G~L~l~l~~ 112 (243)
++|.+.| ..+........|+.|...+. +..|+|+|+++|
T Consensus 77 ~~g~v~l--~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 77 VIGKVAL--SKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEEe--cCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 7776554 44444555678999986543 578999999986
No 68
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.65 E-value=2.6e-15 Score=120.11 Aligned_cols=104 Identities=17% Similarity=0.307 Sum_probs=86.1
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEEecCC-CC---
Q 038128 8 GQPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNT-IT--- 68 (243)
Q Consensus 8 ~~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~-~~--- 68 (243)
.+.|.|.|++|++|+.++ ++||+ ++.||.|+|+|.|.+......|+|.||+.+. ++
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence 357999999999998754 78998 7789999999999987777889999976542 22
Q ss_pred CCceeeEEEEEchHhhhcCCCCCceeecCCCCc----------cceEEEEEEEEEecC
Q 038128 69 GDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGK----------HAGEVNIILRCANVW 116 (243)
Q Consensus 69 ~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~----------~~G~L~l~l~~~~~~ 116 (243)
++++||.+.|++++|......+.||.|...+++ ..++|+|+++|.+..
T Consensus 85 ~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred CCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 578999999999999877777899999976543 237999999998753
No 69
>PLN03008 Phospholipase D delta
Probab=99.64 E-value=9.4e-16 Score=149.23 Aligned_cols=111 Identities=18% Similarity=0.342 Sum_probs=95.7
Q ss_pred ccCceEEEEEEEeeCCCCCCC------------------------------------------CCCCCcEEe--------
Q 038128 6 VQGQPLEVTVIACKGLKDTEW------------------------------------------LSKQDPYVY-------- 35 (243)
Q Consensus 6 ~~~~~L~V~V~~A~~L~~~~~------------------------------------------~g~~dPYv~-------- 35 (243)
+..++|.|+|.+|++|+++++ .+++||||+
T Consensus 11 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv 90 (868)
T PLN03008 11 LLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATL 90 (868)
T ss_pred EeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcce
Confidence 578899999999999986322 235799999
Q ss_pred -------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCc---cceE
Q 038128 36 -------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGK---HAGE 105 (243)
Q Consensus 36 -------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~---~~G~ 105 (243)
++.||+|||+|.|.|.+....|+|+|||+|.++ +++||++.|+|++|......+.|++|+..+++ ..++
T Consensus 91 ~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~k 169 (868)
T PLN03008 91 ARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETA 169 (868)
T ss_pred eeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcE
Confidence 778999999999999987789999999999996 68999999999999887777899999976653 4689
Q ss_pred EEEEEEEEecCC
Q 038128 106 VNIILRCANVWN 117 (243)
Q Consensus 106 L~l~l~~~~~~~ 117 (243)
|+|+|+|.+...
T Consensus 170 l~v~lqf~pv~~ 181 (868)
T PLN03008 170 IFIDMKFTPFDQ 181 (868)
T ss_pred EEEEEEEEEccc
Confidence 999999999765
No 70
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.64 E-value=1.3e-15 Score=120.71 Aligned_cols=88 Identities=30% Similarity=0.561 Sum_probs=77.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEe------------------CCCCCcccceEEEEeeCC----------------Cce
Q 038128 11 LEVTVIACKGLKDTEWLSKQDPYVY------------------GGKNPTFQEKFMFPLIHG----------------VNE 56 (243)
Q Consensus 11 L~V~V~~A~~L~~~~~~g~~dPYv~------------------~~~nP~WnE~f~f~i~~~----------------~~~ 56 (243)
|+|+|++|++|..+ ..+++||||+ ++.+|+|||+|.|.+... ...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 68999999999988 7889999997 578999999999998653 347
Q ss_pred EEEEEEecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCC
Q 038128 57 MNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRS 99 (243)
Q Consensus 57 L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~ 99 (243)
|+|+|||++.+++++|||++.|+|.++........||.|..++
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 9999999999888999999999999988777778999998654
No 71
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.64 E-value=1.1e-15 Score=119.11 Aligned_cols=102 Identities=18% Similarity=0.214 Sum_probs=79.2
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEe----------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCce
Q 038128 10 PLEVTVIACKGLKDTEWLSKQDPYVY----------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDDF 72 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~~~~g~~dPYv~----------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~~ 72 (243)
.|+|+|++|++|...+..+++||||+ ++.||+|||+|.|.+... ...|.|+|||++.+++|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 48999999999999999999999998 678999999999998543 5689999999999989999
Q ss_pred eeEEEEEchHhhhcCCCCCce-eecCCCCccceEEEEEEEEEe
Q 038128 73 IGSGKVQLTKAITQGYDDNPW-PLWTRSGKHAGEVNIILRCAN 114 (243)
Q Consensus 73 IG~~~i~L~~l~~~~~~~~~~-~L~~~~g~~~G~L~l~l~~~~ 114 (243)
||++.|+|++.... ..|. .+...+....|.++.+..+.+
T Consensus 81 iG~~~i~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (124)
T cd04037 81 IGETVIDLEDRFFS---KHRATCGLPPTYEESGPNQWRDSLKP 120 (124)
T ss_pred eEEEEEeecccccc---hHHHhccCCCcccccCceecCcccCc
Confidence 99999999976532 1222 222233335566666555544
No 72
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=2.1e-15 Score=121.53 Aligned_cols=88 Identities=20% Similarity=0.353 Sum_probs=73.8
Q ss_pred eEEEEEEEeeCCCCCCCCC--------------CCCcEEe--------------CCCCCcccceEEEEeeC--CCceEEE
Q 038128 10 PLEVTVIACKGLKDTEWLS--------------KQDPYVY--------------GGKNPTFQEKFMFPLIH--GVNEMNL 59 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~~~~g--------------~~dPYv~--------------~~~nP~WnE~f~f~i~~--~~~~L~v 59 (243)
+|+|+|++|++|+.++..+ .+||||+ ++.||+|||+|.|.+.. ....|+|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 5899999999999987543 6899999 78899999999999743 3458999
Q ss_pred EEEecCCCCCCceeeEEEEEchHhhhcCCC-------CCceeecC
Q 038128 60 VVWNSNTITGDDFIGSGKVQLTKAITQGYD-------DNPWPLWT 97 (243)
Q Consensus 60 ~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~-------~~~~~L~~ 97 (243)
+|||+|.+++|++||++.|+|.+|...+.. ..|+.|..
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 999999999999999999999998765432 36777764
No 73
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.63 E-value=3.1e-15 Score=117.80 Aligned_cols=79 Identities=22% Similarity=0.297 Sum_probs=70.3
Q ss_pred cCceEEEEEEEeeCCCCCCCCCCCCcEEe---------------------CCCCCcccceEEEEeeCC-----CceEEEE
Q 038128 7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY---------------------GGKNPTFQEKFMFPLIHG-----VNEMNLV 60 (243)
Q Consensus 7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------------~~~nP~WnE~f~f~i~~~-----~~~L~v~ 60 (243)
..++|+|+|++|++|...+..+++||||+ ++.||+|||+|.|.+... ...|.|+
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 45789999999999999988899999997 567999999999998642 4479999
Q ss_pred EEecCCCCCCceeeEEEEEchHhhh
Q 038128 61 VWNSNTITGDDFIGSGKVQLTKAIT 85 (243)
Q Consensus 61 V~d~~~~~~d~~IG~~~i~L~~l~~ 85 (243)
|||++.+++|+|||++.|+|++|..
T Consensus 94 V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 94 VKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEecCCCCCCcEeEEEEEeHHHCCc
Confidence 9999999889999999999998864
No 74
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.62 E-value=1.1e-15 Score=120.72 Aligned_cols=92 Identities=20% Similarity=0.315 Sum_probs=77.2
Q ss_pred cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEec
Q 038128 7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNS 64 (243)
Q Consensus 7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~ 64 (243)
..++|+|+|++|+||...+..+++||||+ ++.||+|||+|.|.+... ...|.|+|||+
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~ 92 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDK 92 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence 46789999999999999888899999987 678999999999998532 34799999999
Q ss_pred CCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCC
Q 038128 65 NTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSG 100 (243)
Q Consensus 65 ~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g 100 (243)
+.+++|++||++.|++.+. ......|++|+...+
T Consensus 93 ~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~ 126 (136)
T cd08405 93 DRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPR 126 (136)
T ss_pred CCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCC
Confidence 9999999999999999864 333457778775443
No 75
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.62 E-value=9.6e-15 Score=115.84 Aligned_cols=99 Identities=17% Similarity=0.363 Sum_probs=79.7
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEe---------------------------CCCCCcc-cceEEEEeeCCCceEEEEE
Q 038128 10 PLEVTVIACKGLKDTEWLSKQDPYVY---------------------------GGKNPTF-QEKFMFPLIHGVNEMNLVV 61 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~~~~g~~dPYv~---------------------------~~~nP~W-nE~f~f~i~~~~~~L~v~V 61 (243)
.+.|++++|+||+ +++++++||||+ +++||+| ||+|.|.+.. ...|+|+|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEE
Confidence 4789999999998 778899999997 3689999 9999999963 35799999
Q ss_pred EecCCCCC---CceeeEEEEEchHhhhcCC---CCCceeecCCCC--ccceEEEEEE
Q 038128 62 WNSNTITG---DDFIGSGKVQLTKAITQGY---DDNPWPLWTRSG--KHAGEVNIIL 110 (243)
Q Consensus 62 ~d~~~~~~---d~~IG~~~i~L~~l~~~~~---~~~~~~L~~~~g--~~~G~L~l~l 110 (243)
||++..++ |++||++.|+|.+|+.... ...|+.|..+.. ...|+|.|++
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 99865443 7999999999999976643 345788775442 4678888875
No 76
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=3.8e-15 Score=138.15 Aligned_cols=116 Identities=25% Similarity=0.245 Sum_probs=98.0
Q ss_pred CCccCceEEEEEEEeeCCCCCCCCCCCCcEEe-----------------CCCCCcccceEEEEeeC---CCceEEEEEEe
Q 038128 4 ANVQGQPLEVTVIACKGLKDTEWLSKQDPYVY-----------------GGKNPTFQEKFMFPLIH---GVNEMNLVVWN 63 (243)
Q Consensus 4 ~~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~---~~~~L~v~V~d 63 (243)
+..+...|+|+|++|++|..++..+.+||||+ +++||+|||+|.|.|.. ..+.|.|.|||
T Consensus 162 Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~ 241 (421)
T KOG1028|consen 162 YDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYD 241 (421)
T ss_pred ecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEe
Confidence 45678899999999999999996678999999 78899999999999853 35589999999
Q ss_pred cCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCC---CccceEEEEEEEEEecCCcc
Q 038128 64 SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRS---GKHAGEVNIILRCANVWNFL 119 (243)
Q Consensus 64 ~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~---g~~~G~L~l~l~~~~~~~~~ 119 (243)
.|+|++|++||++.++|..+........|.+|.... .+..|+|.++++|.+.++..
T Consensus 242 ~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~l 300 (421)
T KOG1028|consen 242 FDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRL 300 (421)
T ss_pred cCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeE
Confidence 999999999999999999887666566788888642 23348999999999986643
No 77
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.62 E-value=1e-15 Score=120.83 Aligned_cols=91 Identities=21% Similarity=0.234 Sum_probs=76.6
Q ss_pred ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEe
Q 038128 6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWN 63 (243)
Q Consensus 6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d 63 (243)
...++|+|+|++|++|..++..+++||||+ ++.||+|||+|.|.+... ...|+|+|||
T Consensus 12 ~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d 91 (136)
T cd08402 12 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence 356789999999999999999999999997 677999999999998643 2479999999
Q ss_pred cCCCCCCceeeEEEEEchHhhhcCCCCCceeecCC
Q 038128 64 SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTR 98 (243)
Q Consensus 64 ~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~ 98 (243)
++.+++|++||++.|.+... ......|++|+..
T Consensus 92 ~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~ 124 (136)
T cd08402 92 YDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLAS 124 (136)
T ss_pred CCCCCCCceeEEEEECCccC--ChHHHHHHHHHhC
Confidence 99999999999999999752 3344578888754
No 78
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.61 E-value=1.2e-15 Score=120.17 Aligned_cols=94 Identities=19% Similarity=0.267 Sum_probs=77.1
Q ss_pred CccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEE
Q 038128 5 NVQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVW 62 (243)
Q Consensus 5 ~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~ 62 (243)
....++|+|+|++|++|..++..+++||||+ ++.||+|||+|.|.+... ...|+|+||
T Consensus 10 ~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~ 89 (134)
T cd08403 10 LPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVV 89 (134)
T ss_pred cCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 3467899999999999999999999999986 678999999999998532 236999999
Q ss_pred ecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCC
Q 038128 63 NSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSG 100 (243)
Q Consensus 63 d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g 100 (243)
|++.+++|++||++.|.+.. .......|++++...+
T Consensus 90 d~~~~~~~~~IG~~~l~~~~--~~~~~~~w~~~~~~~~ 125 (134)
T cd08403 90 DYDRVGHNELIGVCRVGPNA--DGQGREHWNEMLANPR 125 (134)
T ss_pred ECCCCCCCceeEEEEECCCC--CCchHHHHHHHHHCCC
Confidence 99999999999999998772 2333456888775444
No 79
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.61 E-value=1.6e-14 Score=112.06 Aligned_cols=100 Identities=23% Similarity=0.341 Sum_probs=82.4
Q ss_pred ceEEEEEEEeeCCCCCC--CCCCCCcEEe--------------------CC-CCCcccceEEEEeeCCC-ceEEEEEEec
Q 038128 9 QPLEVTVIACKGLKDTE--WLSKQDPYVY--------------------GG-KNPTFQEKFMFPLIHGV-NEMNLVVWNS 64 (243)
Q Consensus 9 ~~L~V~V~~A~~L~~~~--~~g~~dPYv~--------------------~~-~nP~WnE~f~f~i~~~~-~~L~v~V~d~ 64 (243)
..|+|+|++|+||...+ ..+..|+||+ ++ .||+|||+|.|.+.... ..|.|+|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 36899999999999887 5778999985 23 39999999999997544 4799999999
Q ss_pred CCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCC--ccceEEEEEEEE
Q 038128 65 NTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSG--KHAGEVNIILRC 112 (243)
Q Consensus 65 ~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g--~~~G~L~l~l~~ 112 (243)
+.+ +|++||++.+.|++|.. ...++.|...++ ...|.|.+++++
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~---g~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQ---GYRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcC---ceEEEEecCCCCCCCcceeEEEEEEE
Confidence 988 89999999999998743 346788887666 357888888876
No 80
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.61 E-value=2.8e-15 Score=114.26 Aligned_cols=86 Identities=24% Similarity=0.308 Sum_probs=71.8
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCC-----CceEEEEEEecCCCC
Q 038128 8 GQPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHG-----VNEMNLVVWNSNTIT 68 (243)
Q Consensus 8 ~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~-----~~~L~v~V~d~~~~~ 68 (243)
.-.|+|+|++|++|. .+++||||+ ++.||+|||+|.|.+... ...|+|+|||++.++
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~ 78 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR 78 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence 347899999999998 467999999 678999999999998543 357999999999998
Q ss_pred CCceeeEEEEEchHhhhcCC---CCCceeecC
Q 038128 69 GDDFIGSGKVQLTKAITQGY---DDNPWPLWT 97 (243)
Q Consensus 69 ~d~~IG~~~i~L~~l~~~~~---~~~~~~L~~ 97 (243)
+|++||+++|+|.++..... ...|+.|..
T Consensus 79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 89999999999999876532 346888763
No 81
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.61 E-value=1.4e-15 Score=118.99 Aligned_cols=91 Identities=20% Similarity=0.290 Sum_probs=78.9
Q ss_pred cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEec
Q 038128 7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNS 64 (243)
Q Consensus 7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~ 64 (243)
+.++|+|+|++|+||...+..+.+|+||+ ++.+|+|||+|.|.+... ...|+|+|||+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~ 91 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK 91 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence 46799999999999999988889999997 577999999999999754 35799999999
Q ss_pred CCCCCCceeeEEEEEchHhhhcCCCCCceeecCCC
Q 038128 65 NTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRS 99 (243)
Q Consensus 65 ~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~ 99 (243)
+.++++++||++.|.|++ .......|+.|....
T Consensus 92 ~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~ 124 (134)
T cd00276 92 DSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASP 124 (134)
T ss_pred CCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence 998889999999999998 444557899998653
No 82
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.61 E-value=1.8e-15 Score=119.84 Aligned_cols=91 Identities=16% Similarity=0.138 Sum_probs=75.4
Q ss_pred ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEe
Q 038128 6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWN 63 (243)
Q Consensus 6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d 63 (243)
...++|+|+|++|+||...+..+.+||||+ ++.||+|||+|.|.|... ...|+|+|||
T Consensus 12 ~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~ 91 (136)
T cd08406 12 PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAE 91 (136)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEe
Confidence 356789999999999999988889999999 678999999999999642 4579999999
Q ss_pred cCCCCCCceeeEEEEEchHhhhcCCCCCceeecCC
Q 038128 64 SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTR 98 (243)
Q Consensus 64 ~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~ 98 (243)
++.++++++||++.|.... .......|.+++..
T Consensus 92 ~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~ 124 (136)
T cd08406 92 STEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLAS 124 (136)
T ss_pred CCCCCCCCeeEEEEECCCC--CChhHHHHHHHHHC
Confidence 9999999999999997653 23334567777643
No 83
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.61 E-value=1.4e-15 Score=120.69 Aligned_cols=91 Identities=22% Similarity=0.200 Sum_probs=74.1
Q ss_pred ccCceEEEEEEEeeCCCCCCC--CCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEE
Q 038128 6 VQGQPLEVTVIACKGLKDTEW--LSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVV 61 (243)
Q Consensus 6 ~~~~~L~V~V~~A~~L~~~~~--~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V 61 (243)
-..++|+|+|++|+||...+. .+.+||||+ ++.||+|||+|.|.|... ...|.|+|
T Consensus 12 ~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V 91 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEV 91 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEE
Confidence 357889999999999998873 345899999 789999999999999643 35799999
Q ss_pred EecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCC
Q 038128 62 WNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTR 98 (243)
Q Consensus 62 ~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~ 98 (243)
||+|.+++|++||++.|.+.. .......|.+++..
T Consensus 92 ~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~ 126 (138)
T cd08407 92 LNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDN 126 (138)
T ss_pred EeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhC
Confidence 999999999999999999864 23333466666643
No 84
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.60 E-value=3.8e-15 Score=116.66 Aligned_cols=75 Identities=25% Similarity=0.492 Sum_probs=65.9
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEee--CCCceEEEEEEecCCCCCCce
Q 038128 9 QPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLI--HGVNEMNLVVWNSNTITGDDF 72 (243)
Q Consensus 9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~--~~~~~L~v~V~d~~~~~~d~~ 72 (243)
++|+|+|++|++|.. +..++.||||+ ++.||+|||+|.|.+. +....|+|+|||++.+++|++
T Consensus 28 ~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~ 106 (127)
T cd04032 28 ATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDL 106 (127)
T ss_pred EEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCe
Confidence 589999999999984 67788999997 7789999999999853 345689999999999999999
Q ss_pred eeEEEEEchHhh
Q 038128 73 IGSGKVQLTKAI 84 (243)
Q Consensus 73 IG~~~i~L~~l~ 84 (243)
||+++|.|....
T Consensus 107 IG~~~i~l~~~~ 118 (127)
T cd04032 107 LGTCSVVPEAGV 118 (127)
T ss_pred eEEEEEEecCCc
Confidence 999999999654
No 85
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.59 E-value=1.3e-14 Score=112.00 Aligned_cols=85 Identities=26% Similarity=0.502 Sum_probs=73.0
Q ss_pred EEEEEeeCCCCCCCCCCCCcEEe---------------------CCCCCcccceEEEEee-CCCceEEEEEEecCC----
Q 038128 13 VTVIACKGLKDTEWLSKQDPYVY---------------------GGKNPTFQEKFMFPLI-HGVNEMNLVVWNSNT---- 66 (243)
Q Consensus 13 V~V~~A~~L~~~~~~g~~dPYv~---------------------~~~nP~WnE~f~f~i~-~~~~~L~v~V~d~~~---- 66 (243)
...++|++|...+..+++||||+ ++.||+|||+|.|.+. +....|+|+|||++.
T Consensus 4 ~~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~ 83 (120)
T cd04048 4 ELSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKD 83 (120)
T ss_pred EEEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCC
Confidence 35589999999999999999996 6689999999999874 345579999999997
Q ss_pred CCCCceeeEEEEEchHhhhcCCCCCceeecC
Q 038128 67 ITGDDFIGSGKVQLTKAITQGYDDNPWPLWT 97 (243)
Q Consensus 67 ~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~ 97 (243)
+++|++||+++++|.+|+.......|+.|..
T Consensus 84 ~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 84 LSDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 7889999999999999987776677888854
No 86
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=1.4e-14 Score=110.55 Aligned_cols=86 Identities=19% Similarity=0.252 Sum_probs=73.3
Q ss_pred CCCCCCCcEEe---------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCceeeEEEEEchHhhhc-C
Q 038128 25 EWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQ-G 87 (243)
Q Consensus 25 ~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~-~ 87 (243)
.+.|++||||+ ++.||+|||+|.|.+.+. ...|+|+|||++.+ +|++||++.|+|++++.. .
T Consensus 8 ~~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~ 86 (111)
T cd04052 8 SKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATS 86 (111)
T ss_pred ccCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhh
Confidence 35677899998 778999999999999765 45799999999999 899999999999999764 3
Q ss_pred CCCCceeecCCCCccceEEEEEEEEEe
Q 038128 88 YDDNPWPLWTRSGKHAGEVNIILRCAN 114 (243)
Q Consensus 88 ~~~~~~~L~~~~g~~~G~L~l~l~~~~ 114 (243)
....||.|.. +..|+|+|++.|.+
T Consensus 87 ~~~~w~~L~~---~~~G~i~~~~~~~p 110 (111)
T cd04052 87 VGQQWFPLSG---NGQGRIRISALWKP 110 (111)
T ss_pred ccceeEECCC---CCCCEEEEEEEEec
Confidence 4468999874 46899999999986
No 87
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.57 E-value=4.9e-15 Score=117.04 Aligned_cols=94 Identities=21% Similarity=0.324 Sum_probs=74.9
Q ss_pred ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEe
Q 038128 6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWN 63 (243)
Q Consensus 6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d 63 (243)
...+.|+|+|++|++|...+..+.+||||+ ++.||+|||+|.|.+... ...|.|+|||
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d 90 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYG 90 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence 356899999999999999998899999998 668999999999999532 2369999999
Q ss_pred cCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCC
Q 038128 64 SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSG 100 (243)
Q Consensus 64 ~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g 100 (243)
++.+++|++||++.|....+ .......|+.|+...+
T Consensus 91 ~d~~~~~~~iG~~~l~~~~~-~~~~~~~W~~l~~~~~ 126 (135)
T cd08410 91 HNVKSSNDFIGRIVIGQYSS-GPSETNHWRRMLNSQR 126 (135)
T ss_pred CCCCCCCcEEEEEEEcCccC-CchHHHHHHHHHhCCC
Confidence 99999999999998654321 1122456888875544
No 88
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.57 E-value=3.9e-15 Score=118.24 Aligned_cols=93 Identities=20% Similarity=0.270 Sum_probs=76.2
Q ss_pred ccCceEEEEEEEeeCCCCCCCCCCCCcEEe--------------------CCCCCcccceEEEEeeCC---CceEEEEEE
Q 038128 6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY--------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVW 62 (243)
Q Consensus 6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~ 62 (243)
...++|+|+|++|+||...+..+.+|+||+ ++.||+|||+|.|.|... ...|.|+||
T Consensus 12 ~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~ 91 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVY 91 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEE
Confidence 456899999999999999998889999999 668999999999999643 347999999
Q ss_pred ecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCC
Q 038128 63 NSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRS 99 (243)
Q Consensus 63 d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~ 99 (243)
|.+.++++++||++.|.+...- ......|.+++...
T Consensus 92 ~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~~ 127 (138)
T cd08408 92 NKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKESK 127 (138)
T ss_pred ECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhCC
Confidence 9999999999999999877422 12234677776433
No 89
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.57 E-value=2.1e-14 Score=115.85 Aligned_cols=84 Identities=30% Similarity=0.451 Sum_probs=72.8
Q ss_pred cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------------------------------CCCCCccc
Q 038128 7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------------------------------GGKNPTFQ 43 (243)
Q Consensus 7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------------------------------~~~nP~Wn 43 (243)
....|+|+|++|++|..++..+++||||+ ++.||+||
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~Wn 105 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWN 105 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccc
Confidence 45689999999999999999999999985 35799999
Q ss_pred ceEEEEeeCC-CceEEEEEEecCCCCCCceeeEEEEEchHhhhcCCCCCceee
Q 038128 44 EKFMFPLIHG-VNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPL 95 (243)
Q Consensus 44 E~f~f~i~~~-~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L 95 (243)
|+|.|.+.+. ...|.|+|||++ |+|||+++|+|+++.. ...+.||.|
T Consensus 106 E~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 106 ETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred cEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 9999999764 458999999997 8999999999999873 446788876
No 90
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.57 E-value=5.6e-15 Score=117.06 Aligned_cols=91 Identities=19% Similarity=0.274 Sum_probs=75.3
Q ss_pred ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEe
Q 038128 6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWN 63 (243)
Q Consensus 6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d 63 (243)
...++|+|+|++|+||...+ .+.+|+||+ ++.||+|||+|.|.|... ...|.|+|||
T Consensus 12 ~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~ 90 (137)
T cd08409 12 PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQ 90 (137)
T ss_pred CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEe
Confidence 35689999999999999888 778999999 688999999999999632 3479999999
Q ss_pred cCCCCCCceeeEEEEEchHhhhcCCCCCceeecC
Q 038128 64 SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWT 97 (243)
Q Consensus 64 ~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~ 97 (243)
++.++++++||++.|.............|.+++.
T Consensus 91 ~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 91 SGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred CCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 9999899999999998654433444567777774
No 91
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.56 E-value=2.4e-14 Score=110.90 Aligned_cols=81 Identities=28% Similarity=0.494 Sum_probs=69.5
Q ss_pred cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEe-eC---CCceEEEEEEe
Q 038128 7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPL-IH---GVNEMNLVVWN 63 (243)
Q Consensus 7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i-~~---~~~~L~v~V~d 63 (243)
..++|+|+|++|++|...+..+.+||||+ ++.||+|||+|.|.. .. ....|.|+|||
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d 92 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD 92 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence 45789999999999999888889999998 567999999999964 32 13579999999
Q ss_pred cCCCCCCceeeEEEEEchHhhhcCC
Q 038128 64 SNTITGDDFIGSGKVQLTKAITQGY 88 (243)
Q Consensus 64 ~~~~~~d~~IG~~~i~L~~l~~~~~ 88 (243)
++.+ ++++||++.|+|++|.....
T Consensus 93 ~~~~-~~~~iG~~~i~l~~l~~~~~ 116 (123)
T cd04035 93 EDRF-GNDFLGETRIPLKKLKPNQT 116 (123)
T ss_pred cCCc-CCeeEEEEEEEcccCCCCcc
Confidence 9988 89999999999999876544
No 92
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.55 E-value=1.2e-14 Score=152.51 Aligned_cols=107 Identities=16% Similarity=0.302 Sum_probs=92.5
Q ss_pred CCccCceEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCC--CceEEEEEEecCC
Q 038128 4 ANVQGQPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHG--VNEMNLVVWNSNT 66 (243)
Q Consensus 4 ~~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~--~~~L~v~V~d~~~ 66 (243)
+...-+.|+|+|++|+||. +.++++||||+ ++.||+|||.|+|.+.+. ...|+|+|||+|.
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred HhhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 3445689999999999998 55788999999 788999999999888764 3579999999999
Q ss_pred CCCCceeeEEEEEchHhhhcCCCCCceeecCCCCccceE---EEEEEEEEe
Q 038128 67 ITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGE---VNIILRCAN 114 (243)
Q Consensus 67 ~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~---L~l~l~~~~ 114 (243)
|+ ++.||.++|+|.+++.++....||.|. +++++.|+ |+|+++|.+
T Consensus 2053 f~-kd~~G~~~i~l~~vv~~~~~~~~~~L~-~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2053 FG-KSSLGKVTIQIDRVVMEGTYSGEYSLN-PESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred cC-CCCCceEEEEHHHHhcCceeeeeeecC-cccccCCCcceEEEEEEecC
Confidence 95 558999999999999998889999999 45566777 999999975
No 93
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.54 E-value=7.9e-14 Score=107.36 Aligned_cols=66 Identities=23% Similarity=0.470 Sum_probs=56.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCCCceEEEEEEec-------
Q 038128 11 LEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNS------- 64 (243)
Q Consensus 11 L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~------- 64 (243)
|+|+|++|+||+ +.+||||+ +++||+|||+|+|.+.. ...|.|.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~ 74 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKL 74 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccc
Confidence 689999999995 45899999 67999999999999964 56899999998
Q ss_pred CCCCCCceeeEEEEEchH
Q 038128 65 NTITGDDFIGSGKVQLTK 82 (243)
Q Consensus 65 ~~~~~d~~IG~~~i~L~~ 82 (243)
|..++|++||.+.|.|+-
T Consensus 75 d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 75 DGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred cccCcccEEEEEEEEECH
Confidence 466789999998888864
No 94
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.53 E-value=2.6e-14 Score=112.75 Aligned_cols=91 Identities=8% Similarity=0.164 Sum_probs=72.0
Q ss_pred ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CC-CCCcccceEEEEeeCC--CceEEEEEEe
Q 038128 6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GG-KNPTFQEKFMFPLIHG--VNEMNLVVWN 63 (243)
Q Consensus 6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~-~nP~WnE~f~f~i~~~--~~~L~v~V~d 63 (243)
-..++|+|+|++|+||+........|+||+ ++ .+|+|||+|.|+|... +..|.|+|||
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d 90 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYS 90 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEe
Confidence 356789999999999998755566799999 45 3699999999999643 2368999999
Q ss_pred cCCCCCCceeeEEEEEchHhhhcCCCCCceeecC
Q 038128 64 SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWT 97 (243)
Q Consensus 64 ~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~ 97 (243)
++.++++++||++.+.++.. .....+.|.+++.
T Consensus 91 ~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~ 123 (135)
T cd08692 91 RSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIA 123 (135)
T ss_pred CCCCcCCceEEEEEECCccC-CchhhhhHHHHHh
Confidence 99999999999999998753 2223456777664
No 95
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=6.7e-14 Score=131.57 Aligned_cols=107 Identities=25% Similarity=0.451 Sum_probs=91.6
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCCCceEEEEEEecCCC-------
Q 038128 9 QPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTI------- 67 (243)
Q Consensus 9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~------- 67 (243)
..++++|+.|.+|..+|..|++||||. ..+||+|||+|.|.+.+....|+|+|||+|..
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrq 374 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQ 374 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHH
Confidence 478999999999999999999999999 67899999999999999999999999998742
Q ss_pred ----CCCceeeEEEEEchHhhhcCCCCCceeecCCCCc--cceEEEEEEEEEecCC
Q 038128 68 ----TGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGK--HAGEVNIILRCANVWN 117 (243)
Q Consensus 68 ----~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~--~~G~L~l~l~~~~~~~ 117 (243)
..|||||++.|.+..| +++++.||.|..+..+ ..|.|+|.|..+.+.+
T Consensus 375 kl~resddflgqtvievrtl--sgemdvwynlekrtdksavsgairlhisveikge 428 (1283)
T KOG1011|consen 375 KLTRESDDFLGQTVIEVRTL--SGEMDVWYNLEKRTDKSAVSGAIRLHISVEIKGE 428 (1283)
T ss_pred HhhhcccccccceeEEEEec--ccchhhhcchhhccchhhccceEEEEEEEEEcCc
Confidence 3589999999998864 4667899999876543 6788888888776554
No 96
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.47 E-value=4.7e-13 Score=101.57 Aligned_cols=74 Identities=22% Similarity=0.442 Sum_probs=63.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEe--------------------CCCCCcccceEEEEeeC---C--CceEEEEEEecC
Q 038128 11 LEVTVIACKGLKDTEWLSKQDPYVY--------------------GGKNPTFQEKFMFPLIH---G--VNEMNLVVWNSN 65 (243)
Q Consensus 11 L~V~V~~A~~L~~~~~~g~~dPYv~--------------------~~~nP~WnE~f~f~i~~---~--~~~L~v~V~d~~ 65 (243)
+.+..++|++|...+..+++||||+ +++||+|| +|.|.+.+ . ...|+|+|||++
T Consensus 2 ~~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d 80 (110)
T cd04047 2 VVELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD 80 (110)
T ss_pred EEEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence 3456679999999999999999997 57899999 78887632 1 458999999999
Q ss_pred CCCCCceeeEEEEEchHhhh
Q 038128 66 TITGDDFIGSGKVQLTKAIT 85 (243)
Q Consensus 66 ~~~~d~~IG~~~i~L~~l~~ 85 (243)
.+++|++||++++.|++|+.
T Consensus 81 ~~~~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 81 SSGKHDLIGEFETTLDELLK 100 (110)
T ss_pred CCCCCcEEEEEEEEHHHHhc
Confidence 99999999999999999883
No 97
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.39 E-value=2.3e-12 Score=122.25 Aligned_cols=109 Identities=21% Similarity=0.290 Sum_probs=99.1
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCce
Q 038128 8 GQPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDF 72 (243)
Q Consensus 8 ~~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~ 72 (243)
...|.|+|.+||||+..+..+..|+||. +++.|-|.|+|.|.|...-..|.|-|||+| +++|+.
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~ 82 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDI 82 (800)
T ss_pred ccceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-cccccc
Confidence 3568999999999999999999999999 899999999999999988889999999999 889999
Q ss_pred eeEEEEEchHhhhcCCCCCceeecCCC--CccceEEEEEEEEEecCC
Q 038128 73 IGSGKVQLTKAITQGYDDNPWPLWTRS--GKHAGEVNIILRCANVWN 117 (243)
Q Consensus 73 IG~~~i~L~~l~~~~~~~~~~~L~~~~--g~~~G~L~l~l~~~~~~~ 117 (243)
||.+.|.-++|......+.||.|..-+ .+..|+|+|++.+.+...
T Consensus 83 IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~ 129 (800)
T KOG2059|consen 83 IGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQ 129 (800)
T ss_pred cceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccC
Confidence 999999999988777788999998654 468999999999998655
No 98
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.37 E-value=1.8e-12 Score=92.39 Aligned_cols=67 Identities=33% Similarity=0.648 Sum_probs=59.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEe-----------------CCCCCcccceEEEEee-CCCceEEEEEEecCCCCCCce
Q 038128 11 LEVTVIACKGLKDTEWLSKQDPYVY-----------------GGKNPTFQEKFMFPLI-HGVNEMNLVVWNSNTITGDDF 72 (243)
Q Consensus 11 L~V~V~~A~~L~~~~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~-~~~~~L~v~V~d~~~~~~d~~ 72 (243)
|+|+|++|++|...+..+..|+||+ ++.+|+|||+|.|.+. .....|.|+|||++.+++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 7899999999999888889999999 6689999999999974 344569999999999988999
Q ss_pred eeEEE
Q 038128 73 IGSGK 77 (243)
Q Consensus 73 IG~~~ 77 (243)
||+++
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99975
No 99
>PLN02270 phospholipase D alpha
Probab=99.34 E-value=1e-11 Score=121.16 Aligned_cols=111 Identities=16% Similarity=0.202 Sum_probs=94.9
Q ss_pred ccCceEEEEEEEeeCCCCCC------------------CCCCCCcEEe---------------C-CCCCcccceEEEEee
Q 038128 6 VQGQPLEVTVIACKGLKDTE------------------WLSKQDPYVY---------------G-GKNPTFQEKFMFPLI 51 (243)
Q Consensus 6 ~~~~~L~V~V~~A~~L~~~~------------------~~g~~dPYv~---------------~-~~nP~WnE~f~f~i~ 51 (243)
+..++|+|+|++|++|++.+ ..+.+|+||. + ..||+|+|+|.+.+.
T Consensus 5 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 5 LLHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred eeecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeec
Confidence 67899999999999998631 1134699999 3 359999999999999
Q ss_pred CCCceEEEEEEecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCcc---ceEEEEEEEEEecCC
Q 038128 52 HGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKH---AGEVNIILRCANVWN 117 (243)
Q Consensus 52 ~~~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~---~G~L~l~l~~~~~~~ 117 (243)
+....|+|+|+|.|.++ .++||.+.|++.+|+.....+.||+|+..+++. ..+|+|+|+|.+...
T Consensus 85 h~~~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 152 (808)
T PLN02270 85 HMASNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK 152 (808)
T ss_pred cCcceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence 99999999999999996 679999999999999888889999999877653 358999999999654
No 100
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.33 E-value=1.8e-11 Score=88.46 Aligned_cols=85 Identities=31% Similarity=0.605 Sum_probs=71.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeC-CCceEEEEEEecCCCCCCceee
Q 038128 11 LEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIH-GVNEMNLVVWNSNTITGDDFIG 74 (243)
Q Consensus 11 L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~-~~~~L~v~V~d~~~~~~d~~IG 74 (243)
|.|.|++|++|.........|+||+ ++.+|.|||.|.|.+.. ....|.|+||+++..+.+++||
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 5799999999988666778999997 56899999999999987 5668999999999887799999
Q ss_pred EEEEEchHhh-hcCCCCCceee
Q 038128 75 SGKVQLTKAI-TQGYDDNPWPL 95 (243)
Q Consensus 75 ~~~i~L~~l~-~~~~~~~~~~L 95 (243)
.+.+.+.++. .......|+.|
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcCCcCcceecC
Confidence 9999999987 44444556543
No 101
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.29 E-value=4e-11 Score=87.20 Aligned_cols=78 Identities=29% Similarity=0.554 Sum_probs=66.9
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEe-----------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCc
Q 038128 10 PLEVTVIACKGLKDTEWLSKQDPYVY-----------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDD 71 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~ 71 (243)
+|.|+|++|++|.........++||+ ++.+|.|||+|.|.+... ...|+|+|||++..+.+.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD 80 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence 47899999999998776667899877 345999999999999776 678999999999887799
Q ss_pred eeeEEEEEchHhhhcC
Q 038128 72 FIGSGKVQLTKAITQG 87 (243)
Q Consensus 72 ~IG~~~i~L~~l~~~~ 87 (243)
+||.+.++|.++..+.
T Consensus 81 ~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 81 FIGQVTIPLSDLLLGG 96 (101)
T ss_pred eeEEEEEEHHHcccCc
Confidence 9999999999876543
No 102
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.25 E-value=4.6e-11 Score=118.84 Aligned_cols=113 Identities=24% Similarity=0.378 Sum_probs=96.8
Q ss_pred CCccCceEEEEEEEeeCCCCCC--CCCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEEecCC
Q 038128 4 ANVQGQPLEVTVIACKGLKDTE--WLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNT 66 (243)
Q Consensus 4 ~~~~~~~L~V~V~~A~~L~~~~--~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~ 66 (243)
.+..-|.|+|+|.+|++|+..+ +.+..|+|++ ++.||+|||+|.+.|......|.|+|||++.
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~ 510 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS 510 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc
Confidence 3456689999999999999887 6788999999 7789999999999999888899999999998
Q ss_pred CCCCceeeEEEEEchHhhhcCCCCC-ceeecCCCCccceEEEEEEEEEecCC
Q 038128 67 ITGDDFIGSGKVQLTKAITQGYDDN-PWPLWTRSGKHAGEVNIILRCANVWN 117 (243)
Q Consensus 67 ~~~d~~IG~~~i~L~~l~~~~~~~~-~~~L~~~~g~~~G~L~l~l~~~~~~~ 117 (243)
+.+|+++|++.++|..|..+..... .++++ ++.+..|+|...++|.+...
T Consensus 511 ~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~-~~~k~vGrL~yDl~ffp~~e 561 (1227)
T COG5038 511 FKSDKVVGSTQLDLALLHQNPVKKNELYEFL-RNTKNVGRLTYDLRFFPVIE 561 (1227)
T ss_pred cCCcceeeeEEechHHhhhccccccceeeee-ccCccceEEEEeeeeecccC
Confidence 9899999999999998877765544 44555 56678999999999988655
No 103
>PLN02223 phosphoinositide phospholipase C
Probab=99.20 E-value=1.5e-10 Score=109.03 Aligned_cols=102 Identities=25% Similarity=0.343 Sum_probs=78.5
Q ss_pred CceEEEEEEEeeCCCC-----CCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCCC-ceEEEEEE
Q 038128 8 GQPLEVTVIACKGLKD-----TEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHGV-NEMNLVVW 62 (243)
Q Consensus 8 ~~~L~V~V~~A~~L~~-----~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~~-~~L~v~V~ 62 (243)
..+|+|+|+++.+|.. .+.....|+||+ ++.||+|||+|+|.|...+ ..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 4679999999998741 123356899999 6889999999999997554 47999999
Q ss_pred ecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCcc--ceEEEEEEEE
Q 038128 63 NSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKH--AGEVNIILRC 112 (243)
Q Consensus 63 d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~--~G~L~l~l~~ 112 (243)
|+|..++|+|||+..++++.|.. .-+++.|.+++++. .-+|.+++.|
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~---GyR~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIE---GIRAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcC---CceeEeccCCCcCCCCCceEEEEEEe
Confidence 99988889999999999997754 23678888877754 3345544443
No 104
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.19 E-value=1.4e-10 Score=91.34 Aligned_cols=78 Identities=26% Similarity=0.445 Sum_probs=63.3
Q ss_pred eEEEEEEEeeCCCC--CCCCCC--CCcEEe-----------------CCCC--CcccceEEEEeeC--------------
Q 038128 10 PLEVTVIACKGLKD--TEWLSK--QDPYVY-----------------GGKN--PTFQEKFMFPLIH-------------- 52 (243)
Q Consensus 10 ~L~V~V~~A~~L~~--~~~~g~--~dPYv~-----------------~~~n--P~WnE~f~f~i~~-------------- 52 (243)
.|+|.|.+|+++.. ++..+. +|+||+ +++| +.||+.|.|.+..
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 38999999999654 334564 999999 6677 9999999998743
Q ss_pred -------C---CceEEEEEEecCCCCCCceeeEEEEEchHhhhcC
Q 038128 53 -------G---VNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQG 87 (243)
Q Consensus 53 -------~---~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~ 87 (243)
. ...|+|+|||.|.+++|++||++++.|..+....
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 1 2359999999999999999999999999776543
No 105
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.17 E-value=7.1e-12 Score=119.28 Aligned_cols=107 Identities=24% Similarity=0.389 Sum_probs=89.2
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEe---------------------------------------------CCCCCcccc
Q 038128 10 PLEVTVIACKGLKDTEWLSKQDPYVY---------------------------------------------GGKNPTFQE 44 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~~~~g~~dPYv~---------------------------------------------~~~nP~WnE 44 (243)
.|.|.+.+|+||.+++.+|.+|||+. +++||+|+|
T Consensus 115 ~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~E 194 (1103)
T KOG1328|consen 115 LLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSE 194 (1103)
T ss_pred HHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhh
Confidence 45677889999999999999999998 789999999
Q ss_pred eEEEEeeCCCc-eEEEEEEecCCC---------------------------------CC---CceeeEEEEEchHhhhcC
Q 038128 45 KFMFPLIHGVN-EMNLVVWNSNTI---------------------------------TG---DDFIGSGKVQLTKAITQG 87 (243)
Q Consensus 45 ~f~f~i~~~~~-~L~v~V~d~~~~---------------------------------~~---d~~IG~~~i~L~~l~~~~ 87 (243)
+|.|+|.+-.. .+++.|||+|.- +. |||+|++.|+|.+|-..
T Consensus 195 kF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~- 273 (1103)
T KOG1328|consen 195 KFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPD- 273 (1103)
T ss_pred heeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCcc-
Confidence 99999987654 799999998641 33 89999999999987543
Q ss_pred CCCCceeecCCCC--ccceEEEEEEEEEecCC
Q 038128 88 YDDNPWPLWTRSG--KHAGEVNIILRCANVWN 117 (243)
Q Consensus 88 ~~~~~~~L~~~~g--~~~G~L~l~l~~~~~~~ 117 (243)
..+.||+|..++. +..|.++|+|.+..+..
T Consensus 274 Gld~WFkLepRS~~S~VqG~~~LklwLsT~e~ 305 (1103)
T KOG1328|consen 274 GLDQWFKLEPRSDKSKVQGQVKLKLWLSTKEE 305 (1103)
T ss_pred hHHHHhccCcccccccccceEEEEEEEeeecc
Confidence 3578999997764 67899999998876554
No 106
>PLN02952 phosphoinositide phospholipase C
Probab=99.13 E-value=5.1e-10 Score=107.24 Aligned_cols=103 Identities=22% Similarity=0.334 Sum_probs=80.0
Q ss_pred CceEEEEEEEeeCCCCC------CCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC-CceEEEEE
Q 038128 8 GQPLEVTVIACKGLKDT------EWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG-VNEMNLVV 61 (243)
Q Consensus 8 ~~~L~V~V~~A~~L~~~------~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~-~~~L~v~V 61 (243)
..+|.|+|++|.+|... +.....|+||+ ++.||+|||+|.|.+... ...|+|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999887421 12233588987 568999999999998754 45789999
Q ss_pred EecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCccceEEEEEEEEE
Q 038128 62 WNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCA 113 (243)
Q Consensus 62 ~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l~l~~~ 113 (243)
||+|..++|+|||++.|+|+.|... -+|+.|.+++++..+.+.|-|+|.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~G---yR~VpL~~~~G~~l~~a~Llv~f~ 597 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPG---IRSVPLHDKKGEKLKNVRLLMRFI 597 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCC---ceeEeCcCCCCCCCCCEEEEEEEE
Confidence 9999988899999999999987543 358899888887666666666654
No 107
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=2.2e-10 Score=106.45 Aligned_cols=88 Identities=27% Similarity=0.395 Sum_probs=72.3
Q ss_pred cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEec
Q 038128 7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNS 64 (243)
Q Consensus 7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~ 64 (243)
.+++|+|.|++|+||+.++..+..|+||+ ++.||+|||+|.|.|... ...|.|+|||+
T Consensus 296 ~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~ 375 (421)
T KOG1028|consen 296 TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDH 375 (421)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEc
Confidence 46899999999999999999999999999 789999999999998632 23699999999
Q ss_pred CCCCCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128 65 NTITGDDFIGSGKVQLTKAITQGYDDNPWPLW 96 (243)
Q Consensus 65 ~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~ 96 (243)
+.++++++||.+.+-... .......|.++.
T Consensus 376 d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~ 405 (421)
T KOG1028|consen 376 DTLGSNDLIGRCILGSDS--TGEEVRHWQEML 405 (421)
T ss_pred ccccccceeeEEEecCCC--CchHHHHHHHHH
Confidence 999999999998887664 222234555554
No 108
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.07 E-value=4e-10 Score=112.34 Aligned_cols=109 Identities=17% Similarity=0.282 Sum_probs=86.5
Q ss_pred cCceEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCCC-ceEEEEEEecCCCCCC
Q 038128 7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGV-NEMNLVVWNSNTITGD 70 (243)
Q Consensus 7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~-~~L~v~V~d~~~~~~d 70 (243)
..+.|+|.+++|.||+..|.++.+||||+ +++||+|||+|++.|.+.. ..|+|.|+|||.-.++
T Consensus 1038 nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~kn 1117 (1227)
T COG5038 1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKN 1117 (1227)
T ss_pred ccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCc
Confidence 47889999999999999999999999999 8999999999999998654 4799999999998899
Q ss_pred ceeeEEEEEchHhhhcCCCCCceeecCCC-CccceEEEEEEEEEec
Q 038128 71 DFIGSGKVQLTKAITQGYDDNPWPLWTRS-GKHAGEVNIILRCANV 115 (243)
Q Consensus 71 ~~IG~~~i~L~~l~~~~~~~~~~~L~~~~-g~~~G~L~l~l~~~~~ 115 (243)
++||.+.|+|..|..+........|..+. ....|.+++...|...
T Consensus 1118 d~lg~~~idL~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~r~~ 1163 (1227)
T COG5038 1118 DLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFRSK 1163 (1227)
T ss_pred cccccccccHhhcCcCCccceeeeccCcceEecccEeecceecchh
Confidence 99999999999876655444334444322 2345555555555543
No 109
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.05 E-value=1.6e-09 Score=104.43 Aligned_cols=102 Identities=25% Similarity=0.419 Sum_probs=80.2
Q ss_pred eEEEEEEEeeCCCCC-CC---CCCCCcEEe--------------------CCCCCcccceEEEEeeCC-CceEEEEEEec
Q 038128 10 PLEVTVIACKGLKDT-EW---LSKQDPYVY--------------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNS 64 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~-~~---~g~~dPYv~--------------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~ 64 (243)
+|.|+|+++.++... +. ....||||. ++-||.|+|+|+|.|... ...|+|+|+|.
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 799999999966432 21 234677766 677999999999999755 45789999999
Q ss_pred CCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCc--cceEEEEEEEEEe
Q 038128 65 NTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGK--HAGEVNIILRCAN 114 (243)
Q Consensus 65 ~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~--~~G~L~l~l~~~~ 114 (243)
|..++|||+|+.+|++++|.. + -+.+.|.+++|+ ..-+|.|++.|.+
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~-G--yRhVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQ-G--YRHVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred CCCCcccccceeeccHHHhhC-c--eeeeeecCCCCccccceeEEEEEEEec
Confidence 999999999999999998754 2 356788887775 4567888887764
No 110
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.04 E-value=2.6e-09 Score=102.30 Aligned_cols=102 Identities=22% Similarity=0.320 Sum_probs=78.6
Q ss_pred CceEEEEEEEeeCCCC------CCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC-CceEEEEE
Q 038128 8 GQPLEVTVIACKGLKD------TEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG-VNEMNLVV 61 (243)
Q Consensus 8 ~~~L~V~V~~A~~L~~------~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~-~~~L~v~V 61 (243)
..+|.|+|+.+.++.. .+.....|+||+ ++.||+|||+|+|.+... ...|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 4689999999998641 122334799999 678999999999998644 55799999
Q ss_pred EecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCcc--ceEEEEEEEE
Q 038128 62 WNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKH--AGEVNIILRC 112 (243)
Q Consensus 62 ~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~--~G~L~l~l~~ 112 (243)
+|+|...+|+|||+..|+|+.|.. + -+.+.|.+++|.. .-+|.+++.|
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~-G--yR~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQ-G--IHAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhC-c--cceEeccCCCcCCCCCCeeEEEEEe
Confidence 999988889999999999998754 2 3567888777743 3466666655
No 111
>PLN02352 phospholipase D epsilon
Probab=98.98 E-value=4.3e-09 Score=102.72 Aligned_cols=108 Identities=14% Similarity=0.185 Sum_probs=86.3
Q ss_pred CccCceEEEEEEEeeCCCCC----CCC-CCCCcEEe------------CCCCCcccceEEEEeeCCC-ceEEEEEEecCC
Q 038128 5 NVQGQPLEVTVIACKGLKDT----EWL-SKQDPYVY------------GGKNPTFQEKFMFPLIHGV-NEMNLVVWNSNT 66 (243)
Q Consensus 5 ~~~~~~L~V~V~~A~~L~~~----~~~-g~~dPYv~------------~~~nP~WnE~f~f~i~~~~-~~L~v~V~d~~~ 66 (243)
.+..++|+++|.+|+-+... +.. ...|+||. +..||+|+|+|.+.+.+.. ..|+|+|+|
T Consensus 6 ~~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--- 82 (758)
T PLN02352 6 KFFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKTSHEYDRVWNQTFQILCAHPLDSTITITLKT--- 82 (758)
T ss_pred cccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecCCCCCCCccccceeEEeeeecCCcEEEEEec---
Confidence 36789999999999844321 111 12389999 4569999999999998887 689999998
Q ss_pred CCCCceeeEEEEEchHhhhcCC-CCCceeecCCCCcc-c-eEEEEEEEEEecCC
Q 038128 67 ITGDDFIGSGKVQLTKAITQGY-DDNPWPLWTRSGKH-A-GEVNIILRCANVWN 117 (243)
Q Consensus 67 ~~~d~~IG~~~i~L~~l~~~~~-~~~~~~L~~~~g~~-~-G~L~l~l~~~~~~~ 117 (243)
...+||.+.|++.+|+.... .+.||+|+..+++. . .+|+|+|+|.+...
T Consensus 83 --~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 134 (758)
T PLN02352 83 --KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAEL 134 (758)
T ss_pred --CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhh
Confidence 36799999999999988755 78999999877653 3 58999999999765
No 112
>PLN02228 Phosphoinositide phospholipase C
Probab=98.96 E-value=8.6e-09 Score=98.34 Aligned_cols=106 Identities=20% Similarity=0.268 Sum_probs=81.7
Q ss_pred ceEEEEEEEeeCCCC---C---CCCCCCCcEEe-------------------CCCCCcc-cceEEEEeeCC-CceEEEEE
Q 038128 9 QPLEVTVIACKGLKD---T---EWLSKQDPYVY-------------------GGKNPTF-QEKFMFPLIHG-VNEMNLVV 61 (243)
Q Consensus 9 ~~L~V~V~~A~~L~~---~---~~~g~~dPYv~-------------------~~~nP~W-nE~f~f~i~~~-~~~L~v~V 61 (243)
.+|+|+|++|.+|.. . +.....|+||+ ++.||+| ||+|+|.+... ...|+|+|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998731 1 12334788998 4569999 99999998654 45799999
Q ss_pred EecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCc--cceEEEEEEEEEecCC
Q 038128 62 WNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGK--HAGEVNIILRCANVWN 117 (243)
Q Consensus 62 ~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~--~~G~L~l~l~~~~~~~ 117 (243)
+|+|..+.|+|||+..|+|+.|.. + -+.+.|.+.+++ ...+|.+++.|.+...
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~-G--YR~VpL~~~~G~~l~~atLfv~~~~~~~~~ 565 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKS-G--VRAVRLHDRAGKAYKNTRLLVSFALDPPYT 565 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhC-C--eeEEEccCCCCCCCCCeEEEEEEEEcCccc
Confidence 999988889999999999998743 3 356788877775 3567888888877543
No 113
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.92 E-value=1.3e-08 Score=97.41 Aligned_cols=102 Identities=24% Similarity=0.323 Sum_probs=76.6
Q ss_pred CceEEEEEEEeeCCC----C--CCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC-CceEEEEE
Q 038128 8 GQPLEVTVIACKGLK----D--TEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG-VNEMNLVV 61 (243)
Q Consensus 8 ~~~L~V~V~~A~~L~----~--~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~-~~~L~v~V 61 (243)
..+|.|+|+.+.++. . .+.....|+||+ ++.||+|||+|+|.|... ...|+|+|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 357999999998742 2 122345788997 557899999999998654 45799999
Q ss_pred EecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCc--cceEEEEEEEE
Q 038128 62 WNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGK--HAGEVNIILRC 112 (243)
Q Consensus 62 ~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~--~~G~L~l~l~~ 112 (243)
+|+|..+.|+|||+..|+|+.|.. + -+.+.|.++++. ..-+|.+++.|
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~-G--yR~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQ-G--IRAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhC-c--cceEEccCCCcCCCCCeeEEEEEEe
Confidence 999988889999999999997754 2 356788877764 33466666665
No 114
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.91 E-value=5.5e-09 Score=78.50 Aligned_cols=74 Identities=18% Similarity=0.349 Sum_probs=61.4
Q ss_pred EEEEEEEeeCCCCCC---CCCCCCcEEe------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCceeeE
Q 038128 11 LEVTVIACKGLKDTE---WLSKQDPYVY------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGS 75 (243)
Q Consensus 11 L~V~V~~A~~L~~~~---~~g~~dPYv~------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~ 75 (243)
|+|+|..|+||.... +.+++|+||+ -+.|++|||+|.|.| +...+|+|+|||+..- +.--||.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~srnd~WnE~F~i~V-dk~nEiel~VyDk~~~-~~~Pi~l 78 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPSRNDRWNEDFEIPV-EKNNEEEVIVYDKGGD-QPVPVGL 78 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCCCCCcccceEEEEe-cCCcEEEEEEEeCCCC-eecceee
Confidence 689999999999887 6778999999 568999999999999 4678999999998632 3446788
Q ss_pred EEEEchHhhhc
Q 038128 76 GKVQLTKAITQ 86 (243)
Q Consensus 76 ~~i~L~~l~~~ 86 (243)
.=|.|++|..+
T Consensus 79 lW~~~sdi~Ee 89 (109)
T cd08689 79 LWLRLSDIAEE 89 (109)
T ss_pred ehhhHHHHHHH
Confidence 88888887643
No 115
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.68 E-value=5.5e-08 Score=91.42 Aligned_cols=106 Identities=19% Similarity=0.305 Sum_probs=84.5
Q ss_pred CceEEEEEEEeeCCCCCCCCC-CCCcEEe--------------CCCCCccc-ceEEEEeeCC---CceEEEEEEecCCCC
Q 038128 8 GQPLEVTVIACKGLKDTEWLS-KQDPYVY--------------GGKNPTFQ-EKFMFPLIHG---VNEMNLVVWNSNTIT 68 (243)
Q Consensus 8 ~~~L~V~V~~A~~L~~~~~~g-~~dPYv~--------------~~~nP~Wn-E~f~f~i~~~---~~~L~v~V~d~~~~~ 68 (243)
-++|.|+|+.|++|+.+|... ..|.||+ +++||.|| +-|.|.+.+. +..|.|++.|+|..+
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys 81 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS 81 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence 367899999999999988643 4788888 88999998 6788888654 346999999999999
Q ss_pred CCceeeEEEEEchHhhhcCC----------CCCceeecCCCCccceEEEEEEEEE
Q 038128 69 GDDFIGSGKVQLTKAITQGY----------DDNPWPLWTRSGKHAGEVNIILRCA 113 (243)
Q Consensus 69 ~d~~IG~~~i~L~~l~~~~~----------~~~~~~L~~~~g~~~G~L~l~l~~~ 113 (243)
.+|-||.+.|+|+-|..+.. ...||.+.+.--..+|+|.|-+++.
T Consensus 82 andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkvd 136 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKVD 136 (1169)
T ss_pred cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEEe
Confidence 99999999999998864421 2478888754445778888877754
No 116
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.67 E-value=4.5e-08 Score=93.57 Aligned_cols=109 Identities=19% Similarity=0.285 Sum_probs=80.9
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEe------------------CCCCCcccceEEEEeeCC----------------
Q 038128 8 GQPLEVTVIACKGLKDTEWLSKQDPYVY------------------GGKNPTFQEKFMFPLIHG---------------- 53 (243)
Q Consensus 8 ~~~L~V~V~~A~~L~~~~~~g~~dPYv~------------------~~~nP~WnE~f~f~i~~~---------------- 53 (243)
...+.+.+++++.+-... ++.+|||++ ++.+|.|||.|.|.+...
T Consensus 130 ~~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~ 208 (800)
T KOG2059|consen 130 SSGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDD 208 (800)
T ss_pred CCcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCc
Confidence 333444444555444333 445999998 788999999999998533
Q ss_pred CceEEEEEEe-cCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCC-------ccceEEEEEEEEEecCC
Q 038128 54 VNEMNLVVWN-SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSG-------KHAGEVNIILRCANVWN 117 (243)
Q Consensus 54 ~~~L~v~V~d-~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g-------~~~G~L~l~l~~~~~~~ 117 (243)
...|+|++|+ ++...+++|+|++++++..+........||.|..+.. ...|.++|.++|.+..-
T Consensus 209 ~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~V 280 (800)
T KOG2059|consen 209 MLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHV 280 (800)
T ss_pred eeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeecee
Confidence 1258899999 5566669999999999999886666778999987532 25689999999988654
No 117
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.66 E-value=1.5e-07 Score=91.16 Aligned_cols=108 Identities=19% Similarity=0.309 Sum_probs=80.1
Q ss_pred CccCceEEEEEEEeeCCCCCCCCCCCCcEEe--------------------CCCCCccc-ceEEEEeeCCCc-eEEEEEE
Q 038128 5 NVQGQPLEVTVIACKGLKDTEWLSKQDPYVY--------------------GGKNPTFQ-EKFMFPLIHGVN-EMNLVVW 62 (243)
Q Consensus 5 ~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------------~~~nP~Wn-E~f~f~i~~~~~-~L~v~V~ 62 (243)
++..-+|.|.|+.|+.|.... .+.+.|||+ +++||+|| |+|+|.|.+..- .|+|+|+
T Consensus 1061 ~l~p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~ 1139 (1267)
T KOG1264|consen 1061 GLLPMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVY 1139 (1267)
T ss_pred cccceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEe
Confidence 455668999999999998544 344668887 89999999 999999987654 7999999
Q ss_pred ecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCC--ccceEEEEEEEEEecC
Q 038128 63 NSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSG--KHAGEVNIILRCANVW 116 (243)
Q Consensus 63 d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g--~~~G~L~l~l~~~~~~ 116 (243)
|.|.|+...||++++++++.|.. + -+.+.|++.-. -...+|.|.|.+.+..
T Consensus 1140 eeDmfs~~~FiaqA~yPv~~ik~-G--fRsVpLkN~ySEdlELaSLLv~i~m~~~~ 1192 (1267)
T KOG1264|consen 1140 EEDMFSDPNFLAQATYPVKAIKS-G--FRSVPLKNGYSEDLELASLLVFIEMRPVL 1192 (1267)
T ss_pred cccccCCcceeeeeecchhhhhc-c--ceeeecccCchhhhhhhhheeeeEecccc
Confidence 99999888899999999997653 2 23445543311 1334556666665543
No 118
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.59 E-value=1.5e-08 Score=97.00 Aligned_cols=78 Identities=24% Similarity=0.397 Sum_probs=69.4
Q ss_pred ccCceEEEEEEEeeCCCCCCCCCCCCcEEe---------------------CCCCCcccceEEEEeeCC-----CceEEE
Q 038128 6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY---------------------GGKNPTFQEKFMFPLIHG-----VNEMNL 59 (243)
Q Consensus 6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------------~~~nP~WnE~f~f~i~~~-----~~~L~v 59 (243)
....+|.|.|+-|+++...|.+|.+||||+ +++||+|+|+|+|.|..+ ...|.|
T Consensus 944 ~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen 944 GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEE
Confidence 456789999999999999999999999999 899999999999999532 235999
Q ss_pred EEEecCCCCCCceeeEEEEEchHh
Q 038128 60 VVWNSNTITGDDFIGSGKVQLTKA 83 (243)
Q Consensus 60 ~V~d~~~~~~d~~IG~~~i~L~~l 83 (243)
+|+|+|-++.|||-|++.+.|.++
T Consensus 1024 TVMDHD~L~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1024 TVMDHDYLRSNDFAGEAFLELGDV 1047 (1103)
T ss_pred EeeccceecccccchHHHHhhCCC
Confidence 999999999999999999888775
No 119
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=7.4e-08 Score=85.14 Aligned_cols=114 Identities=22% Similarity=0.271 Sum_probs=85.9
Q ss_pred CCccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC----CceEEEE
Q 038128 4 ANVQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG----VNEMNLV 60 (243)
Q Consensus 4 ~~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~----~~~L~v~ 60 (243)
+..+++++.++|.+|++|+.+++.+..|+|++ +++|+.|+|+........ ...+++.
T Consensus 88 y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~ 167 (362)
T KOG1013|consen 88 YDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKV 167 (362)
T ss_pred hhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhhee
Confidence 44578899999999999999999999999999 789999998877664322 2358889
Q ss_pred EEecCCCCCCceeeEEEEEchHhhhcCCC--CCce--eecCC-----CCccceEEEEEEEEEecCC
Q 038128 61 VWNSNTITGDDFIGSGKVQLTKAITQGYD--DNPW--PLWTR-----SGKHAGEVNIILRCANVWN 117 (243)
Q Consensus 61 V~d~~~~~~d~~IG~~~i~L~~l~~~~~~--~~~~--~L~~~-----~g~~~G~L~l~l~~~~~~~ 117 (243)
|+|++.+.+++++|+.++.|.+|...... ..|| .|... +-+..|+|.+++.|.....
T Consensus 168 vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~ 233 (362)
T KOG1013|consen 168 VCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTP 233 (362)
T ss_pred eccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCC
Confidence 99999999999999999999887544322 2333 23211 1146788988888765443
No 120
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.24 E-value=1.3e-06 Score=86.39 Aligned_cols=76 Identities=21% Similarity=0.330 Sum_probs=68.7
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEe----------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCc
Q 038128 9 QPLEVTVIACKGLKDTEWLSKQDPYVY----------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDD 71 (243)
Q Consensus 9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~----------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~ 71 (243)
..++|+|++|.+|...|..+++|||++ +++||+|.+.|++.+.-. +..|+|+|+|+|.++.|+
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~ 692 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDE 692 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccc
Confidence 367899999999999999999999999 899999999999998654 557999999999999999
Q ss_pred eeeEEEEEchHhh
Q 038128 72 FIGSGKVQLTKAI 84 (243)
Q Consensus 72 ~IG~~~i~L~~l~ 84 (243)
.||+.+|+|+.-.
T Consensus 693 ~iget~iDLEnR~ 705 (1105)
T KOG1326|consen 693 KIGETTIDLENRW 705 (1105)
T ss_pred hhhceehhhhhcc
Confidence 9999999998643
No 121
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=98.15 E-value=3e-06 Score=77.13 Aligned_cols=111 Identities=16% Similarity=0.234 Sum_probs=81.0
Q ss_pred CccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---C--------
Q 038128 5 NVQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---V-------- 54 (243)
Q Consensus 5 ~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~-------- 54 (243)
++....|+++|+++.++......--.|-|++ ++.+|.|+|.|.+.|... .
T Consensus 363 dl~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fk 442 (523)
T KOG3837|consen 363 DLKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFK 442 (523)
T ss_pred ccchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHH
Confidence 4555678888888887764332111333443 778999999999999541 1
Q ss_pred -ceEEEEEEecCCC-CCCceeeEEEEEchHhhhcCCCCCceeecCCCCccceEEEEEEEEEec
Q 038128 55 -NEMNLVVWNSNTI-TGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCANV 115 (243)
Q Consensus 55 -~~L~v~V~d~~~~-~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l~l~~~~~ 115 (243)
..++|+|+++..| ..|.|+|.+.|.|..|...-+....++|++......|+|.++|++..-
T Consensus 443 r~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR~P 505 (523)
T KOG3837|consen 443 RLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIRQP 505 (523)
T ss_pred hcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEecc
Confidence 1389999998754 458999999999997766666667778876555578999999998764
No 122
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=1.2e-05 Score=76.92 Aligned_cols=107 Identities=21% Similarity=0.213 Sum_probs=82.6
Q ss_pred CCCccCceEEEEEEEeeCCCCCCCCCCCCcEEe---------------------CCCCCcccceEEEEeeCCC----ceE
Q 038128 3 AANVQGQPLEVTVIACKGLKDTEWLSKQDPYVY---------------------GGKNPTFQEKFMFPLIHGV----NEM 57 (243)
Q Consensus 3 ~~~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------------~~~nP~WnE~f~f~i~~~~----~~L 57 (243)
.+|.-...++|.|+.|.+|+=. ..+...|||. ++-.|.+||+|.|.+.++. .+|
T Consensus 1119 hpgtgehkvtvkvvaandlkwq-tsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL 1197 (1283)
T KOG1011|consen 1119 HPGTGEHKVTVKVVAANDLKWQ-TSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYEL 1197 (1283)
T ss_pred CCCCCcceEEEEEEecccccch-hccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEE
Confidence 5677788999999999999743 2455678887 5567999999999996432 369
Q ss_pred EEEEEecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCC-CCccceEEEEEE
Q 038128 58 NLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTR-SGKHAGEVNIIL 110 (243)
Q Consensus 58 ~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~-~g~~~G~L~l~l 110 (243)
.|.|.|......|+.||.+.+.|.++...+....|+.|..+ +.+..|-+.|+|
T Consensus 1198 ~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgrrihmDeTGLtiLRI 1251 (1283)
T KOG1011|consen 1198 QFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGRRIHMDETGLTILRI 1251 (1283)
T ss_pred EEeehhheeecccceeeeeeeehhhHhhcCceeEeeeccccccccccchhHHHH
Confidence 99999988766789999999999999888877889988754 234555544443
No 123
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.98 E-value=6.5e-06 Score=82.80 Aligned_cols=93 Identities=23% Similarity=0.308 Sum_probs=77.6
Q ss_pred CccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEE-eeC---CCceEEEEE
Q 038128 5 NVQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFP-LIH---GVNEMNLVV 61 (243)
Q Consensus 5 ~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~-i~~---~~~~L~v~V 61 (243)
+.+.++|.|.|.-+|+|....-....|+||+ ++.+|.|||.++.+ +.. ..++|.+.|
T Consensus 1520 sY~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sV 1599 (1639)
T KOG0905|consen 1520 SYNNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSV 1599 (1639)
T ss_pred EEcCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeee
Confidence 4578899999999999965554556899999 88999999999887 322 246899999
Q ss_pred EecCCCCCCceeeEEEEEchHhhhcCCCCCceeecC
Q 038128 62 WNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWT 97 (243)
Q Consensus 62 ~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~ 97 (243)
|..+.+..+.|+|.+.|+|.++....+...||.|..
T Consensus 1600 ls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1600 LSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred ecccceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 999988889999999999999877777778999864
No 124
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.95 E-value=7.2e-06 Score=59.69 Aligned_cols=71 Identities=20% Similarity=0.295 Sum_probs=53.2
Q ss_pred EEEEEEeeCCCCCCCCC-CCCcEEe-----------------CCCCCcccceEEEEeeCC---CceEEEEEEecCCCCCC
Q 038128 12 EVTVIACKGLKDTEWLS-KQDPYVY-----------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSNTITGD 70 (243)
Q Consensus 12 ~V~V~~A~~L~~~~~~g-~~dPYv~-----------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~~~~~d 70 (243)
-|||++|+||.--...+ ....|++ +..||+|.|+|.|.|... +..|.|.|++ .+.+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 58999999997433222 2345666 678999999999998532 3368888888 45678
Q ss_pred ceeeEEEEEchHhh
Q 038128 71 DFIGSGKVQLTKAI 84 (243)
Q Consensus 71 ~~IG~~~i~L~~l~ 84 (243)
+.||+|.+.|+++-
T Consensus 80 e~iG~~sL~l~s~g 93 (103)
T cd08684 80 RTIGECSLSLRTLS 93 (103)
T ss_pred ceeeEEEeecccCC
Confidence 99999999998753
No 125
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.82 E-value=6.2e-05 Score=71.09 Aligned_cols=75 Identities=21% Similarity=0.383 Sum_probs=61.0
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEe--------------------CCCCCcccceEEEEee-----CCCceEEEEEEec
Q 038128 10 PLEVTVIACKGLKDTEWLSKQDPYVY--------------------GGKNPTFQEKFMFPLI-----HGVNEMNLVVWNS 64 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~~~~g~~dPYv~--------------------~~~nP~WnE~f~f~i~-----~~~~~L~v~V~d~ 64 (243)
......++|++|.++++++++|+|.. ++++|.|.+ |.+.+. +..+.|+|+|||.
T Consensus 137 ~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~ 215 (529)
T KOG1327|consen 137 DVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDY 215 (529)
T ss_pred ceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEecc
Confidence 44445567899999999999999988 789999954 555542 3356799999999
Q ss_pred CCCCCCceeeEEEEEchHhhh
Q 038128 65 NTITGDDFIGSGKVQLTKAIT 85 (243)
Q Consensus 65 ~~~~~d~~IG~~~i~L~~l~~ 85 (243)
+..+++++||++...+.++..
T Consensus 216 ~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 216 DSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred CCCCCcCceeEecccHHHhcc
Confidence 999989999999999998754
No 126
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=3e-05 Score=68.88 Aligned_cols=78 Identities=27% Similarity=0.371 Sum_probs=65.6
Q ss_pred CCccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCCC---ceEEEEE
Q 038128 4 ANVQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHGV---NEMNLVV 61 (243)
Q Consensus 4 ~~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~~---~~L~v~V 61 (243)
......-|.|++++|..|..+|..+-+|+||+ ++.+|.||+.|.|+|...+ ..+.|.|
T Consensus 228 ~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsv 307 (362)
T KOG1013|consen 228 YSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSV 307 (362)
T ss_pred cCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEee
Confidence 34556679999999999999999999999999 7889999999999996542 3699999
Q ss_pred EecCCCCCCceeeEEEEEch
Q 038128 62 WNSNTITGDDFIGSGKVQLT 81 (243)
Q Consensus 62 ~d~~~~~~d~~IG~~~i~L~ 81 (243)
||.+.-+.++++|-+..-+.
T Consensus 308 gd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 308 GDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred cccCCCcCccCCCccccccc
Confidence 99998767899998765443
No 127
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.80 E-value=7.8e-05 Score=58.12 Aligned_cols=85 Identities=26% Similarity=0.423 Sum_probs=60.2
Q ss_pred EEEEEEEeeCCCCC---------CC----CCCCCcEEe------------------CCCCCcccceEEEEee--------
Q 038128 11 LEVTVIACKGLKDT---------EW----LSKQDPYVY------------------GGKNPTFQEKFMFPLI-------- 51 (243)
Q Consensus 11 L~V~V~~A~~L~~~---------~~----~g~~dPYv~------------------~~~nP~WnE~f~f~i~-------- 51 (243)
|.|.|++|.+|+.. ++ .-..|.||+ ++-.|+|+.+|+|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46788888888631 11 012567777 6778999999999874
Q ss_pred C--------CCceEEEEEEecCC----------CCCCceeeEEEEEchHhhhcC-CCCCceee
Q 038128 52 H--------GVNEMNLVVWNSNT----------ITGDDFIGSGKVQLTKAITQG-YDDNPWPL 95 (243)
Q Consensus 52 ~--------~~~~L~v~V~d~~~----------~~~d~~IG~~~i~L~~l~~~~-~~~~~~~L 95 (243)
+ ...+|+|+||+++. ..+|-+||.++|++.+|+... ....||.+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 12359999998652 234669999999999998764 45678764
No 128
>PLN02964 phosphatidylserine decarboxylase
Probab=97.64 E-value=3.1e-05 Score=75.40 Aligned_cols=85 Identities=14% Similarity=0.289 Sum_probs=64.2
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCc
Q 038128 8 GQPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDD 71 (243)
Q Consensus 8 ~~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~ 71 (243)
.+.+.|+|++|+ +++ .|.|+. ++.||+|||...|.|... ....+|.|||++++++++
T Consensus 53 ~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~ 125 (644)
T PLN02964 53 SGIALLTLVGAE----MKF---KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNT 125 (644)
T ss_pred cCeEEEEeehhh----hcc---CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHH
Confidence 567889999986 232 366665 789999999999998644 346799999999999999
Q ss_pred eeeEEEEEchHhhhcCCCC--CceeecCCC
Q 038128 72 FIGSGKVQLTKAITQGYDD--NPWPLWTRS 99 (243)
Q Consensus 72 ~IG~~~i~L~~l~~~~~~~--~~~~L~~~~ 99 (243)
+++.|+++|.++....... ..|.+.+.+
T Consensus 126 lv~~~e~~~t~f~~kqi~elkeaF~lfD~d 155 (644)
T PLN02964 126 LVGYCELDLFDFVTQEPESACESFDLLDPS 155 (644)
T ss_pred hhhheeecHhhccHHHHHHHHHHHHHHCCC
Confidence 9999999988876553322 335666544
No 129
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=97.61 E-value=0.0016 Score=51.22 Aligned_cols=81 Identities=14% Similarity=0.227 Sum_probs=55.0
Q ss_pred CCCCCcccceEEEEee----CC-----CceEEEEEEecCCCCCCceeeEEEEEchHhhhcCCC--CCceeecCCCCccce
Q 038128 36 GGKNPTFQEKFMFPLI----HG-----VNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYD--DNPWPLWTRSGKHAG 104 (243)
Q Consensus 36 ~~~nP~WnE~f~f~i~----~~-----~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~--~~~~~L~~~~g~~~G 104 (243)
.+..-.|||+|.|.+. .. ...|+|.|+....-++...||.+.|+|.++...... ...+.|... .+...
T Consensus 48 ~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~-~~~~a 126 (143)
T PF10358_consen 48 KNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC-KKSNA 126 (143)
T ss_pred cccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC-CCCCc
Confidence 4556799999999872 11 224888888874333336899999999999875422 334444432 35678
Q ss_pred EEEEEEEEEecCC
Q 038128 105 EVNIILRCANVWN 117 (243)
Q Consensus 105 ~L~l~l~~~~~~~ 117 (243)
.|+|+|++....+
T Consensus 127 ~L~isi~~~~~~~ 139 (143)
T PF10358_consen 127 TLSISISLSELRE 139 (143)
T ss_pred EEEEEEEEEECcc
Confidence 8888888887544
No 130
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.54 E-value=0.00058 Score=66.77 Aligned_cols=7 Identities=57% Similarity=1.137 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 038128 155 PPAGYGG 161 (243)
Q Consensus 155 pp~~~~~ 161 (243)
||.|+.+
T Consensus 534 pp~gG~g 540 (1102)
T KOG1924|consen 534 PPTGGTG 540 (1102)
T ss_pred CCCCCCC
Confidence 3334443
No 131
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.33 E-value=0.00026 Score=70.64 Aligned_cols=62 Identities=21% Similarity=0.433 Sum_probs=48.4
Q ss_pred eEEEEEEecCCCCCCceeeEEEEEchHhhhc----------------------CCCCCceeecCCCC---ccceEEEEEE
Q 038128 56 EMNLVVWNSNTITGDDFIGSGKVQLTKAITQ----------------------GYDDNPWPLWTRSG---KHAGEVNIIL 110 (243)
Q Consensus 56 ~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~----------------------~~~~~~~~L~~~~g---~~~G~L~l~l 110 (243)
.|.|+|||.|.|++|||||.++++|+++... .....||.+...++ ...|+++++|
T Consensus 940 rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~a~~~~~~~l~Gkvem~l 1019 (1105)
T KOG1326|consen 940 RLIIQIWDNDKFSKDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQAEEGDAKVLAGKVEMSL 1019 (1105)
T ss_pred heEEEecccCccChhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccceeeecCCCcceecceeeeeh
Confidence 4999999999999999999999999886531 22236888876544 2579999999
Q ss_pred EEEecCC
Q 038128 111 RCANVWN 117 (243)
Q Consensus 111 ~~~~~~~ 117 (243)
.+..+.+
T Consensus 1020 eilt~~E 1026 (1105)
T KOG1326|consen 1020 EILTEKE 1026 (1105)
T ss_pred hhhhhhh
Confidence 8876544
No 132
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.0002 Score=64.76 Aligned_cols=93 Identities=22% Similarity=0.286 Sum_probs=72.6
Q ss_pred cCceEEEEEEEeeCCCCCCCC-CCCCcEEe-------------------CCCCCcccceEEEEeeCCCceEEEEEEe-cC
Q 038128 7 QGQPLEVTVIACKGLKDTEWL-SKQDPYVY-------------------GGKNPTFQEKFMFPLIHGVNEMNLVVWN-SN 65 (243)
Q Consensus 7 ~~~~L~V~V~~A~~L~~~~~~-g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d-~~ 65 (243)
..+.|+|.|++|++|..+-.. ..+++||+ ++.+|.+.....|+-......|.++||. ..
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdyg 346 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYG 346 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecccc
Confidence 456899999999999765432 25888888 6667777777777777777889999994 56
Q ss_pred CCCCCceeeEEEEEchHhhhcC-CCCCceeecCCC
Q 038128 66 TITGDDFIGSGKVQLTKAITQG-YDDNPWPLWTRS 99 (243)
Q Consensus 66 ~~~~d~~IG~~~i~L~~l~~~~-~~~~~~~L~~~~ 99 (243)
++.+++|+|.++|-|++|.... ....||+|....
T Consensus 347 Rmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 347 RMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred ccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 7778999999999999986655 556899988543
No 133
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=97.08 E-value=0.007 Score=48.88 Aligned_cols=81 Identities=17% Similarity=0.280 Sum_probs=63.2
Q ss_pred CCCCCcccceEEEEeeCCC--------------ceEEEEEEecCCCCCCceeeEEEEEchHhhhcCCC--CCceeecCCC
Q 038128 36 GGKNPTFQEKFMFPLIHGV--------------NEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYD--DNPWPLWTRS 99 (243)
Q Consensus 36 ~~~nP~WnE~f~f~i~~~~--------------~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~--~~~~~L~~~~ 99 (243)
.+.+|.|+|.|.|.+..+. ..|+|.|...|..+...++|+-.++..+++..+.. ...++|....
T Consensus 54 ~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~ 133 (156)
T PF15627_consen 54 CACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVG 133 (156)
T ss_pred cccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccC
Confidence 7889999999999995331 23888888877776679999999999999888776 4455676544
Q ss_pred Cc---cceEEEEEEEEEecC
Q 038128 100 GK---HAGEVNIILRCANVW 116 (243)
Q Consensus 100 g~---~~G~L~l~l~~~~~~ 116 (243)
.. ..|.|.|++.+.+..
T Consensus 134 ~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 134 PESKVPVGILDLRLELLPNL 153 (156)
T ss_pred CCCccceeEEEEEEEeecCC
Confidence 33 689999999998753
No 134
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.91 E-value=0.011 Score=53.80 Aligned_cols=104 Identities=13% Similarity=0.181 Sum_probs=75.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeC--------CCceEEEEEEecC-CC
Q 038128 11 LEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIH--------GVNEMNLVVWNSN-TI 67 (243)
Q Consensus 11 L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~--------~~~~L~v~V~d~~-~~ 67 (243)
+.|.|++++++..... ....+. .+..|.||-.+.|.+.. ....|+|+|+..| ..
T Consensus 2 ivl~i~egr~F~~~~~---~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPR---HPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCCC---ccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 6789999999876521 112222 66789999999988742 1235999999887 55
Q ss_pred CCCceeeEEEEEchHh---hhc--CCCCCceeecCCCC---ccceEEEEEEEEEecCC
Q 038128 68 TGDDFIGSGKVQLTKA---ITQ--GYDDNPWPLWTRSG---KHAGEVNIILRCANVWN 117 (243)
Q Consensus 68 ~~d~~IG~~~i~L~~l---~~~--~~~~~~~~L~~~~g---~~~G~L~l~l~~~~~~~ 117 (243)
++.+.||-+.++|..+ ... .....||.|++.++ +.+-+|.|.|.+.....
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 6788999999999987 333 23458999997633 35678999988887655
No 135
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=96.66 E-value=0.01 Score=48.87 Aligned_cols=72 Identities=14% Similarity=0.250 Sum_probs=50.7
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEe--------------------CCCCCcccceEEEEee--C--CCceEEEEEEec
Q 038128 9 QPLEVTVIACKGLKDTEWLSKQDPYVY--------------------GGKNPTFQEKFMFPLI--H--GVNEMNLVVWNS 64 (243)
Q Consensus 9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------------~~~nP~WnE~f~f~i~--~--~~~~L~v~V~d~ 64 (243)
..|+|+|+.+.+|...+ ...+.||+ ...++.|||.++|+|. + ....|.|+||+.
T Consensus 8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 47899999999987512 23455555 2467899999999874 2 245799999986
Q ss_pred CCCC----------------CCceeeEEEEEchH
Q 038128 65 NTIT----------------GDDFIGSGKVQLTK 82 (243)
Q Consensus 65 ~~~~----------------~d~~IG~~~i~L~~ 82 (243)
.... ++..||.+.+.|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 5321 24688888888776
No 136
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.58 E-value=0.014 Score=47.42 Aligned_cols=71 Identities=13% Similarity=0.211 Sum_probs=51.5
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEee--C--CCceEEEEEEecC
Q 038128 9 QPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLI--H--GVNEMNLVVWNSN 65 (243)
Q Consensus 9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~--~--~~~~L~v~V~d~~ 65 (243)
+.|+|+|++++++...+ ..|.||+ ...++.|||-++|.|. + ....|.|+||+.+
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPCSNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCCCCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 47899999999887543 3466766 2257899999999874 2 2457999999865
Q ss_pred CCC----CCceeeEEEEEchH
Q 038128 66 TIT----GDDFIGSGKVQLTK 82 (243)
Q Consensus 66 ~~~----~d~~IG~~~i~L~~ 82 (243)
..+ ....||.+.+.|-+
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred cccCCCCceEEEEEEEEEEEC
Confidence 321 23469999998876
No 137
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.19 E-value=0.027 Score=45.22 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=50.0
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEe--------------------CCCCCcccceEEEEee--C--CCceEEEEEEec
Q 038128 9 QPLEVTVIACKGLKDTEWLSKQDPYVY--------------------GGKNPTFQEKFMFPLI--H--GVNEMNLVVWNS 64 (243)
Q Consensus 9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------------~~~nP~WnE~f~f~i~--~--~~~~L~v~V~d~ 64 (243)
..|+|+|....++...+ ....+.||+ .+.+..|||.++|.+. + .+..|.|+||+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 35677777777665411 112344444 2367999999999873 2 245799999997
Q ss_pred CCCC--CCceeeEEEEEchHh
Q 038128 65 NTIT--GDDFIGSGKVQLTKA 83 (243)
Q Consensus 65 ~~~~--~d~~IG~~~i~L~~l 83 (243)
+..+ ++..||.+.+.|-+.
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred ecCCCCcceEEEEEeEEeEcc
Confidence 7543 468999999998863
No 138
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=96.04 E-value=0.042 Score=41.65 Aligned_cols=77 Identities=14% Similarity=0.193 Sum_probs=48.3
Q ss_pred CCCCCcccceEEEEeeCC--------CceEEEEEEecCCCCCCceeeEEEEEchHhhhcCC--CCCceeecCCCCccceE
Q 038128 36 GGKNPTFQEKFMFPLIHG--------VNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGY--DDNPWPLWTRSGKHAGE 105 (243)
Q Consensus 36 ~~~nP~WnE~f~f~i~~~--------~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~--~~~~~~L~~~~g~~~G~ 105 (243)
.+.+|.+|.+-.|.|..+ ...|.||++..... ..++||.++|.|.+++.... ......|...+++.-|.
T Consensus 19 ~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~-d~~tla~~~i~l~~ll~~~~~~i~~~~~l~g~~~~~~g~ 97 (107)
T PF11618_consen 19 RGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGS-DFETLAAGQISLRPLLESNGERIHGSATLVGVSGEDFGT 97 (107)
T ss_dssp ESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS--EEEEEEEEE--SHHHH--S--EEEEEEE-BSSS-TSEE
T ss_pred eCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccC-CeEEEEEEEeechhhhcCCCceEEEEEEEeccCCCeEEE
Confidence 688999999888888643 24599999987633 36799999999999986654 23456777777788999
Q ss_pred EEEEEEEE
Q 038128 106 VNIILRCA 113 (243)
Q Consensus 106 L~l~l~~~ 113 (243)
|+..+++.
T Consensus 98 l~y~~rl~ 105 (107)
T PF11618_consen 98 LEYWIRLR 105 (107)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEec
Confidence 99998875
No 139
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.02 E-value=0.025 Score=56.47 Aligned_cols=86 Identities=27% Similarity=0.446 Sum_probs=61.6
Q ss_pred CccCceEEEEEEEeeCCCCCCCCCCCCcEEe----------------------CCCCCcccc-eEEEE--eeCCCceEEE
Q 038128 5 NVQGQPLEVTVIACKGLKDTEWLSKQDPYVY----------------------GGKNPTFQE-KFMFP--LIHGVNEMNL 59 (243)
Q Consensus 5 ~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~----------------------~~~nP~WnE-~f~f~--i~~~~~~L~v 59 (243)
++=..+|.|+|+++.-|..++ ..-||. ++.||+|+| .|+|. +......|+|
T Consensus 699 gvIA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRi 774 (1189)
T KOG1265|consen 699 GVIAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRI 774 (1189)
T ss_pred ceEEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheee
Confidence 445678999999999887664 335655 889999985 67776 3456678999
Q ss_pred EEEecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCc
Q 038128 60 VVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGK 101 (243)
Q Consensus 60 ~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~ 101 (243)
.|+++. .+|||.-.++|+.|. .+. +.+.|.+..+.
T Consensus 775 avyeEg----gK~ig~RIlpvd~l~-~GY--rhv~LRse~Nq 809 (1189)
T KOG1265|consen 775 AVYEEG----GKFIGQRILPVDGLN-AGY--RHVCLRSESNQ 809 (1189)
T ss_pred eeeccC----Cceeeeeccchhccc-Ccc--eeEEecCCCCC
Confidence 999985 679999999998653 333 23445444443
No 140
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=95.93 E-value=0.1 Score=51.70 Aligned_cols=7 Identities=29% Similarity=0.676 Sum_probs=2.7
Q ss_pred CCCcccc
Q 038128 38 KNPTFQE 44 (243)
Q Consensus 38 ~nP~WnE 44 (243)
.+|.|+-
T Consensus 442 ~DPdf~y 448 (1102)
T KOG1924|consen 442 MDPDFKY 448 (1102)
T ss_pred CCCCcch
Confidence 3344433
No 141
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=95.92 E-value=0.028 Score=46.08 Aligned_cols=75 Identities=20% Similarity=0.210 Sum_probs=51.7
Q ss_pred CceEEEEEEEeeCCCCCCCCCCCCcEEe--------------C----------CCCCcccceEEEEee--C--CCceEEE
Q 038128 8 GQPLEVTVIACKGLKDTEWLSKQDPYVY--------------G----------GKNPTFQEKFMFPLI--H--GVNEMNL 59 (243)
Q Consensus 8 ~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~----------~~nP~WnE~f~f~i~--~--~~~~L~v 59 (243)
...|.|+|.++.++.........|.||. . .....|||.++|.+. + .+..|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 3467888989888876543333555655 1 124669999999874 2 2457999
Q ss_pred EEEecCCCC---------CCceeeEEEEEchH
Q 038128 60 VVWNSNTIT---------GDDFIGSGKVQLTK 82 (243)
Q Consensus 60 ~V~d~~~~~---------~d~~IG~~~i~L~~ 82 (243)
+||+....+ ++..||.+.+.|-+
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEc
Confidence 999866543 35689999988775
No 142
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=95.71 E-value=0.035 Score=40.77 Aligned_cols=63 Identities=11% Similarity=0.135 Sum_probs=44.9
Q ss_pred CCCCcccceEEEEeeCCCceEEEEEEecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCccceEEEEEEEE
Q 038128 37 GKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRC 112 (243)
Q Consensus 37 ~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l~l~~ 112 (243)
..+-.||++|+|++.. .++|+|.|+=+| ...+.|...+.|++... .....| ...|.|..+++|
T Consensus 30 ~s~q~WDQ~Fti~LdR-sRELEI~VywrD---~RslCav~~lrLEd~~~----~~~~~l-----epqg~l~~ev~f 92 (98)
T cd08687 30 KSNQAWDQSFTLELER-SRELEIAVYWRD---WRSLCAVKFLKLEDERH----EVQLDM-----EPQLCLVAELTF 92 (98)
T ss_pred cccccccceeEEEeec-ccEEEEEEEEec---chhhhhheeeEhhhhcc----cceecc-----ccccEEEEEEEe
Confidence 3478899999999863 568999998776 35678888888887322 122223 367888888887
No 143
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=94.87 E-value=0.072 Score=50.76 Aligned_cols=61 Identities=21% Similarity=0.426 Sum_probs=45.5
Q ss_pred CCCCCcccceEEEEee-CCCceEEEEEEecCC----CCCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128 36 GGKNPTFQEKFMFPLI-HGVNEMNLVVWNSNT----ITGDDFIGSGKVQLTKAITQGYDDNPWPLW 96 (243)
Q Consensus 36 ~~~nP~WnE~f~f~i~-~~~~~L~v~V~d~~~----~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~ 96 (243)
+.+||.|.++|.+... +....|+|+++|.+. +..++|+|++...|..++........+.|+
T Consensus 50 ~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~ 115 (529)
T KOG1327|consen 50 NVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLK 115 (529)
T ss_pred ccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcc
Confidence 8899999999888874 455678999988653 455789999999999987665443333333
No 144
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=94.78 E-value=0.1 Score=42.31 Aligned_cols=46 Identities=11% Similarity=0.298 Sum_probs=36.6
Q ss_pred CCCCcccceEEEEee--C--CCceEEEEEEecCCCCCCceeeEEEEEchH
Q 038128 37 GKNPTFQEKFMFPLI--H--GVNEMNLVVWNSNTITGDDFIGSGKVQLTK 82 (243)
Q Consensus 37 ~~nP~WnE~f~f~i~--~--~~~~L~v~V~d~~~~~~d~~IG~~~i~L~~ 82 (243)
+....|||-++|.|. + .+..|.|+|||.+..++...||.+++.|-+
T Consensus 57 ~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 57 KNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 456889999999884 2 245799999998765567799999998875
No 145
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=94.77 E-value=0.16 Score=41.95 Aligned_cols=56 Identities=9% Similarity=0.061 Sum_probs=35.3
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEee--C--CCceEEEEEEecC
Q 038128 9 QPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLI--H--GVNEMNLVVWNSN 65 (243)
Q Consensus 9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~--~--~~~~L~v~V~d~~ 65 (243)
..++|+|.++.++ +.+.......||+ -+.++.|||-++|.|. + ....|.|+||+..
T Consensus 10 ~~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 10 RKFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 3677888777533 2222222334444 3456889999999874 2 2457999999863
No 146
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=94.71 E-value=0.12 Score=51.80 Aligned_cols=78 Identities=13% Similarity=0.122 Sum_probs=61.2
Q ss_pred CCCcccceEEEEeeCCCceEEEEEEecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCc---cceEEEEEEEEEe
Q 038128 38 KNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGK---HAGEVNIILRCAN 114 (243)
Q Consensus 38 ~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~---~~G~L~l~l~~~~ 114 (243)
.++.|.+.|.+-+......+++++.+.+.++...++|.+++++..++.+.....|+.++..+++ ..-.+.+++.|..
T Consensus 162 e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~ 241 (887)
T KOG1329|consen 162 ENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILDNDGKPHQKGSNESLRLGFTP 241 (887)
T ss_pred ccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeeccCCccccCCcccceEEeeEe
Confidence 5789999998888888889999999999887788999999999998887777888888766553 2233444455544
Q ss_pred c
Q 038128 115 V 115 (243)
Q Consensus 115 ~ 115 (243)
.
T Consensus 242 ~ 242 (887)
T KOG1329|consen 242 M 242 (887)
T ss_pred e
Confidence 3
No 147
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=94.45 E-value=0.088 Score=47.07 Aligned_cols=103 Identities=16% Similarity=0.147 Sum_probs=63.0
Q ss_pred cCceEEEEEEEeeCCCCCCC--CCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCC
Q 038128 7 QGQPLEVTVIACKGLKDTEW--LSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITG 69 (243)
Q Consensus 7 ~~~~L~V~V~~A~~L~~~~~--~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~ 69 (243)
..++|.|.+.++++|+.... .-..+.||+ .+.--.|.|+|++++.+ ...|.+-|+.|+.-.+
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~R 127 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQRR 127 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchhh
Confidence 46789999999999975332 224677888 34456799999998864 2356777877775555
Q ss_pred CceeeEEEEEchHhhhcCCCCCceeecCCCCccceEEEEEEEEEe
Q 038128 70 DDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCAN 114 (243)
Q Consensus 70 d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l~l~~~~ 114 (243)
++++=.--|.+..+.... .+..+-|. -+.+|.+.|+|.|..
T Consensus 128 HKLC~~g~l~~~~v~rqs-pd~~~Al~---lePrgq~~~r~~~~D 168 (442)
T KOG1452|consen 128 HKLCHLGLLEAFVVDRQS-PDRVVALY---LEPRGQPPLRLPLAD 168 (442)
T ss_pred ccccccchhhhhhhhhcC-Ccceeeee---cccCCCCceecccCC
Confidence 655433334444332222 22223222 236777777777653
No 148
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=92.95 E-value=0.53 Score=35.74 Aligned_cols=61 Identities=21% Similarity=0.367 Sum_probs=43.2
Q ss_pred eEEEEEEecCC---CCCCceeeEEEEEchHhhhc--------------CCCCCceeecCCCCccceEEEEEEEEEecC
Q 038128 56 EMNLVVWNSNT---ITGDDFIGSGKVQLTKAITQ--------------GYDDNPWPLWTRSGKHAGEVNIILRCANVW 116 (243)
Q Consensus 56 ~L~v~V~d~~~---~~~d~~IG~~~i~L~~l~~~--------------~~~~~~~~L~~~~g~~~G~L~l~l~~~~~~ 116 (243)
.|.+.+|+... .....+||.+.|+|.+++.. ......|.|.+..++..|+|.|.+|+.--.
T Consensus 30 pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~~G~I~l~iRLsclG 107 (112)
T PF14924_consen 30 PLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNPVGEISLYIRLSCLG 107 (112)
T ss_pred ceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCceeeeEEEEEEEecCc
Confidence 46666654322 34567999999999987621 122356889887778899999999987543
No 149
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=92.69 E-value=0.27 Score=38.80 Aligned_cols=46 Identities=13% Similarity=0.241 Sum_probs=35.8
Q ss_pred CCCcccceEEEEee----CCCceEEEEEEecCCCCCC----ceeeEEEEEchHh
Q 038128 38 KNPTFQEKFMFPLI----HGVNEMNLVVWNSNTITGD----DFIGSGKVQLTKA 83 (243)
Q Consensus 38 ~nP~WnE~f~f~i~----~~~~~L~v~V~d~~~~~~d----~~IG~~~i~L~~l 83 (243)
.++.|||.++|.|. ..+..|.|+||+.+....+ ..||.+.+.|-+.
T Consensus 32 ~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 32 SRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred ccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 68999999999973 2355799999998766544 6999999998763
No 150
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=92.42 E-value=0.47 Score=39.80 Aligned_cols=46 Identities=11% Similarity=0.139 Sum_probs=32.8
Q ss_pred CCCCCcccceEEEEeeCC---CceEEEEEEecCCC-CC---CceeeEEEEEch
Q 038128 36 GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSNTI-TG---DDFIGSGKVQLT 81 (243)
Q Consensus 36 ~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~~~-~~---d~~IG~~~i~L~ 81 (243)
...+|.|+|++.+.|... ...|.|++.+.... .+ +..+|-+-++|-
T Consensus 62 h~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 62 QVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred ecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 788999999999999533 34688998764321 12 356888878775
No 151
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=92.12 E-value=0.59 Score=38.51 Aligned_cols=47 Identities=15% Similarity=0.248 Sum_probs=30.9
Q ss_pred CCCCCcccceEEEEeeCC---CceEEEEEEecCCCC-C--CceeeEEEEEchH
Q 038128 36 GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSNTIT-G--DDFIGSGKVQLTK 82 (243)
Q Consensus 36 ~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~~~~-~--d~~IG~~~i~L~~ 82 (243)
.+.+|.|+|+|.+.|... ...|.|++++...-. + +..+|-+.++|.+
T Consensus 68 h~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 68 HNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp T-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred cCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 678999999999999643 336889998754322 1 2699999999886
No 152
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=90.73 E-value=0.94 Score=37.83 Aligned_cols=47 Identities=17% Similarity=0.331 Sum_probs=33.1
Q ss_pred CCCCCcccceEEEEeeCC---CceEEEEEEecCCCC-C-CceeeEEEEEchH
Q 038128 36 GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSNTIT-G-DDFIGSGKVQLTK 82 (243)
Q Consensus 36 ~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~~~~-~-d~~IG~~~i~L~~ 82 (243)
.+.+|.|+|+|.+.|... ...|.|++++..... + ...+|-+-++|-+
T Consensus 62 H~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 62 HNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred cCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 788999999999999633 346888887643221 1 2568888777753
No 153
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=89.91 E-value=1.6 Score=32.38 Aligned_cols=29 Identities=10% Similarity=0.277 Sum_probs=21.7
Q ss_pred CCCCcccceEEEEee--C--CCceEEEEEEecC
Q 038128 37 GKNPTFQEKFMFPLI--H--GVNEMNLVVWNSN 65 (243)
Q Consensus 37 ~~nP~WnE~f~f~i~--~--~~~~L~v~V~d~~ 65 (243)
.....|||-++|.|. + ....|.|+||+..
T Consensus 59 ~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 59 FPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred CCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 345889999999874 2 2457999999864
No 154
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=88.29 E-value=3.4 Score=33.88 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=35.3
Q ss_pred CCCCCcccceEEEEeeCC---CceEEEEEEecCCC-----CCCceeeEEEEEchH
Q 038128 36 GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSNTI-----TGDDFIGSGKVQLTK 82 (243)
Q Consensus 36 ~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~~~-----~~d~~IG~~~i~L~~ 82 (243)
...+|.|+|+|.+.|... ...|.|++++...- .....+|-+-++|.+
T Consensus 61 ~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 61 YHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred cCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 448999999999999543 33689999875422 236789999998875
No 155
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=87.49 E-value=1.5 Score=35.69 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=36.4
Q ss_pred CcccceEEEEeeCCCceEEEEEEecCCCCCCceeeEEEEEchHhh
Q 038128 40 PTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAI 84 (243)
Q Consensus 40 P~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~ 84 (243)
-.|+|+|.+.|..--..|.|+||.... ..+.+|+++.|+|-...
T Consensus 64 v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 64 VHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGST 107 (168)
T ss_pred EeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence 456889999998767789999999987 46899999999977643
No 156
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=87.29 E-value=2.6 Score=38.41 Aligned_cols=66 Identities=8% Similarity=0.192 Sum_probs=48.1
Q ss_pred ceEEEEeeCCCceEEEEEEecCCCCCCceeeEEEEEchHhhhcC--CCCCceeecCCCCccceEEEEEEE
Q 038128 44 EKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQG--YDDNPWPLWTRSGKHAGEVNIILR 111 (243)
Q Consensus 44 E~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~--~~~~~~~L~~~~g~~~G~L~l~l~ 111 (243)
+...+.|..-+.+|+|.|+..... +...||.+.|.+++-+-+. -.+.||.+. ++|+..++|.|++.
T Consensus 104 qRV~IkIRQcDnTLkI~lfKKkLv-kk~hIgdI~InIn~dIIdk~FPKnkWy~c~-kDGq~~cRIqLSFh 171 (508)
T PTZ00447 104 QRVDIKIRQCDETLRVDLFTTKLT-KKVHIGQIKIDINASVISKSFPKNEWFVCF-KDGQEICKVQMSFY 171 (508)
T ss_pred eeeeeeeeecCceEEEEEEecccc-ceeEEEEEEecccHHHHhccCCccceEEEe-cCCceeeeEEEEeh
Confidence 444445555667899999988765 5788999999998754332 246788885 77888888888764
No 157
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=86.65 E-value=3.8 Score=33.88 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=33.0
Q ss_pred CCCCCcccceEEEEeeCC---CceEEEEEEecCCCC------CCceeeEEEEEchH
Q 038128 36 GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSNTIT------GDDFIGSGKVQLTK 82 (243)
Q Consensus 36 ~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~~~~------~d~~IG~~~i~L~~ 82 (243)
.+.+|.|+|+|.+.|.-. ...|.|++++.+.-. .+..+|-+-++|-+
T Consensus 63 Hnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 63 HNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 789999999999999533 335888887743211 13568877777654
No 158
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=81.21 E-value=13 Score=30.92 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=33.3
Q ss_pred CCCCCcccceEEEEeeCC---CceEEEEEEecCC--C-------CCCceeeEEEEEchH
Q 038128 36 GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSNT--I-------TGDDFIGSGKVQLTK 82 (243)
Q Consensus 36 ~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~~--~-------~~d~~IG~~~i~L~~ 82 (243)
.+.+|.|.|+|.+.|.-. ...|.|++++.+- - ..+..+|-+-++|-+
T Consensus 65 h~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 65 HNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred cCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 779999999999998533 3368888887541 1 113568888887764
No 159
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=80.41 E-value=14 Score=29.89 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=32.9
Q ss_pred CCCCcccceEEEEeeCC----CceEEEEEEecCCCCCCceeeEEEEEc
Q 038128 37 GKNPTFQEKFMFPLIHG----VNEMNLVVWNSNTITGDDFIGSGKVQL 80 (243)
Q Consensus 37 ~~nP~WnE~f~f~i~~~----~~~L~v~V~d~~~~~~d~~IG~~~i~L 80 (243)
+..-.||.-|++.+... -..|.|+||..|.++++.+.|=..+.|
T Consensus 54 ~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 54 DDVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred CCceEEeccEEEEEEeCCCCCCceEEEEEEEEcccCCeEEeEEeEEEe
Confidence 34577998888887422 237999999999999998887655544
No 160
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.38 E-value=11 Score=30.50 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=28.7
Q ss_pred cccceEEEEeeCCC----ceEEEEEEecCCCCCCceeeEEEEEch
Q 038128 41 TFQEKFMFPLIHGV----NEMNLVVWNSNTITGDDFIGSGKVQLT 81 (243)
Q Consensus 41 ~WnE~f~f~i~~~~----~~L~v~V~d~~~~~~d~~IG~~~i~L~ 81 (243)
+||--|++.+.... ..|.+.|+.+|-+++|.+.|-..|.|-
T Consensus 65 v~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GYg~~hiP 109 (187)
T KOG4027|consen 65 VINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGYGMLHIP 109 (187)
T ss_pred EEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeeeeeEecC
Confidence 45555555543222 259999999999999999987776654
No 161
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=77.35 E-value=1.3 Score=43.61 Aligned_cols=73 Identities=10% Similarity=-0.089 Sum_probs=46.8
Q ss_pred CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCceeeEEEEEchHhhhc-CCCCCceeecCCCCccceEEEEEEEEEe
Q 038128 36 GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQ-GYDDNPWPLWTRSGKHAGEVNIILRCAN 114 (243)
Q Consensus 36 ~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~-~~~~~~~~L~~~~g~~~G~L~l~l~~~~ 114 (243)
.+..|.|+|+|.+.+.. ...+.|.|+.+..+..+.+...+++..+++... .....|..+. ..|+|.+.+.+..
T Consensus 49 ~~~~~~~~~~F~~~v~~-~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w~~~~-----~~g~~~~~~~~~~ 122 (694)
T KOG0694|consen 49 ELRIPELRETFHVEVVA-GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLWVLIE-----ELGTLLKPAALTG 122 (694)
T ss_pred CCCCchhhhheeeeeec-CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhccccc-----cccceeeeecccC
Confidence 67899999999999653 456777777776665666666666666666542 2223454433 3466666555544
No 162
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=70.45 E-value=16 Score=25.75 Aligned_cols=26 Identities=15% Similarity=0.500 Sum_probs=21.4
Q ss_pred CceEEEEEEecCCCCCCceeeEEEEE
Q 038128 54 VNEMNLVVWNSNTITGDDFIGSGKVQ 79 (243)
Q Consensus 54 ~~~L~v~V~d~~~~~~d~~IG~~~i~ 79 (243)
...++|++|+++.+..|++|+++..+
T Consensus 11 ~~~~~V~L~e~d~~~~Ddll~~~~Td 36 (80)
T PF01060_consen 11 AKNVKVKLWEDDYFDPDDLLDETKTD 36 (80)
T ss_pred CCCCEEEEEECCCCCCCceeEEEEEC
Confidence 34578999999987789999987763
No 163
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=63.73 E-value=8.6 Score=35.82 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=31.1
Q ss_pred eeeEEEEEchHhhhc-CCCCCceeecCCCCc--cceEEEEEEEEEec
Q 038128 72 FIGSGKVQLTKAITQ-GYDDNPWPLWTRSGK--HAGEVNIILRCANV 115 (243)
Q Consensus 72 ~IG~~~i~L~~l~~~-~~~~~~~~L~~~~g~--~~G~L~l~l~~~~~ 115 (243)
+||.+.|+++.++.. .....||.+.+.+.+ ..|.| |+++|.+.
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~~~~l-lk~~~~~~ 46 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVGEGLI-IKVSSEEN 46 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcCcceE-EEEEeeec
Confidence 589999999996555 456789998875543 34555 67777664
No 164
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=58.41 E-value=8.2 Score=39.32 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=30.2
Q ss_pred cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeC
Q 038128 7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIH 52 (243)
Q Consensus 7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~ 52 (243)
.-+.+.+.+.+|+.|+.. .+.||. ++..+.||++|++.+..
T Consensus 757 ~ygflh~~vhsat~lkqs-----~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~ 816 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLKQS-----RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE 816 (1112)
T ss_pred cccceeeeeccccccccc-----cceeeehhhhhhccccccccceeeecccCCCCChhcccchhh
Confidence 446788888998888753 233444 78899999999988854
No 165
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=54.67 E-value=94 Score=23.67 Aligned_cols=73 Identities=11% Similarity=0.195 Sum_probs=42.2
Q ss_pred ceEEEEEEEeeCCCCCCCCCCCCcEEe--CCC------CCccc-------ceEEEEeeCC---CceEEEEEEecCC-CCC
Q 038128 9 QPLEVTVIACKGLKDTEWLSKQDPYVY--GGK------NPTFQ-------EKFMFPLIHG---VNEMNLVVWNSNT-ITG 69 (243)
Q Consensus 9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~--~~~------nP~Wn-------E~f~f~i~~~---~~~L~v~V~d~~~-~~~ 69 (243)
..|.|+-+.-..++..+..+.++||++ +.. ...|+ +.+.|.+... .-.+.|++++.+. ...
T Consensus 4 ~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~ 83 (134)
T PF10409_consen 4 RPLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMS 83 (134)
T ss_dssp -EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTECC
T ss_pred eeEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeEeCCEEEEEEeCCCcccc
Confidence 456666666677776666677899999 211 11222 2234443321 2368899998773 335
Q ss_pred CceeeEEEEEch
Q 038128 70 DDFIGSGKVQLT 81 (243)
Q Consensus 70 d~~IG~~~i~L~ 81 (243)
++.|..+.+.-.
T Consensus 84 ~~~~f~~~FnT~ 95 (134)
T PF10409_consen 84 KEKMFRFWFNTG 95 (134)
T ss_dssp CEEEEEEEEEGG
T ss_pred cCeEEEEEEeee
Confidence 677777776654
No 166
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=54.10 E-value=42 Score=31.48 Aligned_cols=59 Identities=10% Similarity=0.200 Sum_probs=37.5
Q ss_pred ceEEEEEEecCC-----C-CCCceeeEEEEEchHhhhcCC-----CCCceeecCCCC----ccceEEEEEEEEEe
Q 038128 55 NEMNLVVWNSNT-----I-TGDDFIGSGKVQLTKAITQGY-----DDNPWPLWTRSG----KHAGEVNIILRCAN 114 (243)
Q Consensus 55 ~~L~v~V~d~~~-----~-~~d~~IG~~~i~L~~l~~~~~-----~~~~~~L~~~~g----~~~G~L~l~l~~~~ 114 (243)
..|+|.||.-++ + .+.++||.++|+|+ +..... .+.|+.|-..+. ....+|+|.++.++
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~Ep 168 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEP 168 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccC
Confidence 359999997432 2 45689999999998 332221 246777664432 13567888877654
No 167
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=52.60 E-value=80 Score=31.41 Aligned_cols=100 Identities=16% Similarity=0.200 Sum_probs=62.0
Q ss_pred eEEEEEEEeeCCCCCCCCCCCCcEEe-------------CCCCCcccceEEEEeeCCCceEEEEEEecCCC---CCCcee
Q 038128 10 PLEVTVIACKGLKDTEWLSKQDPYVY-------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTI---TGDDFI 73 (243)
Q Consensus 10 ~L~V~V~~A~~L~~~~~~g~~dPYv~-------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~---~~d~~I 73 (243)
.++|.|.+..+|+...- +.-.||. ...-|.|.-.=.|...+....++|.++.+..- -.|+-|
T Consensus 342 smevvvmevqglksvap--nrivyctmevegeklqtdqaeaskp~wgtqgdfstthplpvvkvklftestgvlaledkel 419 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVAP--NRIVYCTMEVEGEKLQTDQAEASKPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALEDKEL 419 (1218)
T ss_pred eeeEEEeeeccccccCC--CeeEEEEEEecccccccchhhhcCCCCCcCCCcccCCCCceeEEEEEeecceeEEeechhh
Confidence 56788888888876543 2346777 44579998877777777777788888776421 136668
Q ss_pred eEEEEEchHhhhcCCCCCceeecCCCC--ccceEEEEEEEEE
Q 038128 74 GSGKVQLTKAITQGYDDNPWPLWTRSG--KHAGEVNIILRCA 113 (243)
Q Consensus 74 G~~~i~L~~l~~~~~~~~~~~L~~~~g--~~~G~L~l~l~~~ 113 (243)
|++.+.-.. .......|+.+...++ +..-+|+|.++..
T Consensus 420 grvil~ptp--ns~ks~ewh~mtvpknsqdqdlkiklavrmd 459 (1218)
T KOG3543|consen 420 GRVILQPTP--NSAKSPEWHTMTVPKNSQDQDLKIKLAVRMD 459 (1218)
T ss_pred CeEEEecCC--CCcCCccceeeecCCCCcCccceEEEEEecc
Confidence 887765442 2222345666654443 3344555555554
No 168
>KOG2181 consensus LIM domain binding protein LDB1/NLI/CLIM [Transcription]
Probab=51.13 E-value=9.3 Score=34.27 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=28.9
Q ss_pred CCCCcccceEEEEeeCCCceEEEEEEecCCCCCCceeeEEEEE
Q 038128 37 GKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQ 79 (243)
Q Consensus 37 ~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~~~i~ 79 (243)
+.| .|=+.|.-.+.+++..|.|.++.+|.- +.-.||+..|+
T Consensus 68 sdN-~WWDaFstEFFeDDa~Lt~~fclEdgp-kRYtIgRtlIP 108 (415)
T KOG2181|consen 68 SDN-QWWDAFSTEFFEDDAKLTFVFCLEDGP-KRYTIGRTLIP 108 (415)
T ss_pred chh-hhHHhhhhhhhcCCceEEEEEEecCCc-ceeeeccchhH
Confidence 344 555667777777788898888877644 35578888776
No 169
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=50.95 E-value=32 Score=25.47 Aligned_cols=39 Identities=8% Similarity=0.176 Sum_probs=27.9
Q ss_pred ccceEEEEeeCCCceEEEEEEecCCCCCCceeeEEEEEchHhhh
Q 038128 42 FQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAIT 85 (243)
Q Consensus 42 WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~ 85 (243)
+|..+.|.+.+....+.|+|.|.+ .+++|-+ |+-++++.
T Consensus 53 ~~~~l~F~vde~~~~~vVkViD~~---T~eVIRq--IP~Ee~l~ 91 (107)
T PF03646_consen 53 LNTSLRFSVDEESGRVVVKVIDKE---TGEVIRQ--IPPEELLD 91 (107)
T ss_dssp SS--EEEEEEEETTEEEEEEEETT---T-SEEEE--E-HHHHHH
T ss_pred cCCceEEEEecCCCcEEEEEEECC---CCcEEEe--CCcHHHHH
Confidence 777899999888788999999987 4667765 77776653
No 170
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=47.28 E-value=36 Score=24.76 Aligned_cols=67 Identities=13% Similarity=0.234 Sum_probs=30.9
Q ss_pred eEEEEeeCCCc--eEEEEEEecCC--CCC--Cceee---EEEEEchHhhhcCCCCCceeecCCCC-ccceEEEEEEE
Q 038128 45 KFMFPLIHGVN--EMNLVVWNSNT--ITG--DDFIG---SGKVQLTKAITQGYDDNPWPLWTRSG-KHAGEVNIILR 111 (243)
Q Consensus 45 ~f~f~i~~~~~--~L~v~V~d~~~--~~~--d~~IG---~~~i~L~~l~~~~~~~~~~~L~~~~g-~~~G~L~l~l~ 111 (243)
++.+.+.+..+ .-.|+|+|.+. +.. -..-+ .+++.|..-+..+.-...|..+..+| ...|++.++++
T Consensus 21 ~v~L~F~e~v~~~~s~v~v~~~~g~~v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV~wrvvs~DGH~~~G~~~F~V~ 97 (97)
T PF04234_consen 21 EVTLTFSEPVEPGFSSVTVTDPDGKRVDLGEPTVDGDGKTLTVPLPPPLPPGTYTVSWRVVSADGHPVSGSFSFTVK 97 (97)
T ss_dssp SEEEEESS---CCC-EEEEEEEEETTSCTCEEEEEESTTEEEEEESS---SEEEEEEEEEEETTSCEEEEEEEEEE-
T ss_pred EEEEEeCCCCccCccEEEEEcCCCceeecCcceecCCceEEEEECCCCCCCceEEEEEEEEecCCCCcCCEEEEEEC
Confidence 34555544433 45667766542 211 11222 45555555333333345566665666 57788877763
No 171
>KOG4028 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.13 E-value=66 Score=25.36 Aligned_cols=24 Identities=13% Similarity=0.440 Sum_probs=18.9
Q ss_pred ceEEEEEEecCCCCCCceeeEEEE
Q 038128 55 NEMNLVVWNSNTITGDDFIGSGKV 78 (243)
Q Consensus 55 ~~L~v~V~d~~~~~~d~~IG~~~i 78 (243)
..|.|.||++|++++.++.|--.+
T Consensus 74 prl~~qiw~~dnfgr~eiagyg~~ 97 (175)
T KOG4028|consen 74 PRLHFQIWHHDNFGRCEIAGYGFC 97 (175)
T ss_pred ceeeeeeeecCcccceeecccceE
Confidence 369999999999988887765443
No 172
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=44.08 E-value=56 Score=33.64 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=18.3
Q ss_pred CCCCcccceEEEEee--CC--CceEEEEEEe
Q 038128 37 GKNPTFQEKFMFPLI--HG--VNEMNLVVWN 63 (243)
Q Consensus 37 ~~nP~WnE~f~f~i~--~~--~~~L~v~V~d 63 (243)
..++.||+.++|+|. +. ...|.|.|+.
T Consensus 390 ~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~ 420 (1076)
T KOG0904|consen 390 CSFPLWNEWLEFDIYIKDLPRMARLCLAIYA 420 (1076)
T ss_pred ccchhccceeEeeeecCCCChhhhheeeeeE
Confidence 567999999999984 22 2246666654
No 173
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=43.64 E-value=3.8e+02 Score=27.46 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=12.2
Q ss_pred CceeeEEEEEchHhhhc
Q 038128 70 DDFIGSGKVQLTKAITQ 86 (243)
Q Consensus 70 d~~IG~~~i~L~~l~~~ 86 (243)
|.-+|.+.|++++|..+
T Consensus 506 D~~lGVt~IP~~kLt~d 522 (894)
T KOG0132|consen 506 DVELGVTYIPWEKLTDD 522 (894)
T ss_pred hcccCeeEeehHhcCHH
Confidence 44579999998876543
No 174
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=40.72 E-value=2.7e+02 Score=25.44 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=19.9
Q ss_pred eEEEEEEecCCCCCCceeeEEEEEchHhhhc
Q 038128 56 EMNLVVWNSNTITGDDFIGSGKVQLTKAITQ 86 (243)
Q Consensus 56 ~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~ 86 (243)
.|.|.++.. +..||.+.|+|..++..
T Consensus 271 ~L~I~Lc~g-----~~~Lg~~~v~l~~Ll~~ 296 (340)
T PF12416_consen 271 KLQIHLCCG-----NQSLGSTSVPLQPLLPK 296 (340)
T ss_pred CeEEEEeeC-----CcEEEEEEEEhhhccCC
Confidence 466666663 56799999999998754
No 175
>PRK08868 flagellar protein FlaG; Provisional
Probab=40.54 E-value=53 Score=26.20 Aligned_cols=41 Identities=7% Similarity=0.192 Sum_probs=31.4
Q ss_pred CcccceEEEEeeCCCceEEEEEEecCCCCCCceeeEEEEEchHhhh
Q 038128 40 PTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAIT 85 (243)
Q Consensus 40 P~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~ 85 (243)
-.+|..+.|.+.+....+.|+|.|.+ .+++|=+ |+-++++.
T Consensus 85 ~~~n~~L~F~vdeetgr~VVkViD~~---T~EVIRQ--IP~Ee~L~ 125 (144)
T PRK08868 85 KSINKGLSFRVDEESGRDVVTIYEAS---TGDIIRQ--IPDEEMLE 125 (144)
T ss_pred HhhcCceEEEEecCCCCEEEEEEECC---CCceeee--CCCHHHHH
Confidence 45678899999988888999999987 4667655 66666553
No 176
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=38.62 E-value=83 Score=24.54 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=38.8
Q ss_pred cceEEEEeeCCCc--eEEEEEEecCCC-------CCCcee-eEEEEEchHhhhcCCCCCceeecCCCC-ccceEEEEEEE
Q 038128 43 QEKFMFPLIHGVN--EMNLVVWNSNTI-------TGDDFI-GSGKVQLTKAITQGYDDNPWPLWTRSG-KHAGEVNIILR 111 (243)
Q Consensus 43 nE~f~f~i~~~~~--~L~v~V~d~~~~-------~~d~~I-G~~~i~L~~l~~~~~~~~~~~L~~~~g-~~~G~L~l~l~ 111 (243)
-++|++...+... ...++|.+-+.. ..++-= =..+|++..-+..+.-...|...+.++ ..+|.+.++++
T Consensus 46 P~~i~L~Fse~ve~~fs~~~l~~~d~~~v~t~~~~~~~~~~~~l~v~l~~~L~aG~Y~v~WrvvS~DGH~v~G~~sFsV~ 125 (127)
T COG2372 46 PAAITLEFSEGVEPGFSGAKLTGPDGEEVATAGTKLDEQNHTQLEVPLPQPLKAGVYTVDWRVVSSDGHVVKGSISFSVG 125 (127)
T ss_pred ceeEEEecCCccCCCcceeEEECCCCCccccCcccccccCCcEEEecCcccCCCCcEEEEEEEEecCCcEeccEEEEEec
Confidence 3667777665533 255566554321 011100 125666666555555566777777776 57888887764
No 177
>PF08174 Anillin: Cell division protein anillin; InterPro: IPR012966 This is a conserved domain in the anillin family of proteins, which are involved in cell division []. In Schizosaccharomyces pombe (Fission yeast, anillin (Mid2) is involved in septin ring organisation and cell separation [, ]. The domain is found adjacent to a 'pleckstrin homology' (PH) domain. The PH domain occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton (IPR001849 from INTERPRO).
Probab=38.54 E-value=78 Score=24.45 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=14.1
Q ss_pred CcccceEEEEeeCCCceEEEEEEec
Q 038128 40 PTFQEKFMFPLIHGVNEMNLVVWNS 64 (243)
Q Consensus 40 P~WnE~f~f~i~~~~~~L~v~V~d~ 64 (243)
-.|++.|.|.....+-.|+|+||+.
T Consensus 65 i~f~~~~~~~~~~~dF~v~vevy~~ 89 (140)
T PF08174_consen 65 ICFPDTFEFSNVGPDFEVTVEVYNE 89 (140)
T ss_pred EecCceeeecccCCCcEEEEEEEEE
Confidence 3445555555544455667777664
No 178
>PF10349 WWbp: WW-domain ligand protein; InterPro: IPR018826 This entry represents a sequence domain found in WW domain-binding protein that is characterised by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis []. This domain lies just downstream of IPR004182 from INTERPRO in many sequences.
Probab=37.77 E-value=1.6e+02 Score=22.42 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=11.1
Q ss_pred CccceEEEEEEEEEe
Q 038128 100 GKHAGEVNIILRCAN 114 (243)
Q Consensus 100 g~~~G~L~l~l~~~~ 114 (243)
+.+.|+++|+|+|+.
T Consensus 3 GGw~g~~~fKltFk~ 17 (116)
T PF10349_consen 3 GGWEGQAEFKLTFKS 17 (116)
T ss_pred CCccCceEEEEEeCC
Confidence 346677888888876
No 179
>PF14472 DUF4429: Domain of unknown function (DUF4429)
Probab=36.59 E-value=70 Score=23.28 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=12.0
Q ss_pred CceeeEEEEEchHhh
Q 038128 70 DDFIGSGKVQLTKAI 84 (243)
Q Consensus 70 d~~IG~~~i~L~~l~ 84 (243)
....|+.+|+|++|.
T Consensus 21 ~~~~G~~~ipl~~i~ 35 (94)
T PF14472_consen 21 KRALGEKTIPLSAIS 35 (94)
T ss_pred hccCCCEEEEHHHcc
Confidence 345899999999874
No 180
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.84 E-value=35 Score=33.93 Aligned_cols=43 Identities=19% Similarity=0.402 Sum_probs=32.4
Q ss_pred CcccceEEEEee--C--CCceEEEEEEecCCCCCCceeeEEEEEchH
Q 038128 40 PTFQEKFMFPLI--H--GVNEMNLVVWNSNTITGDDFIGSGKVQLTK 82 (243)
Q Consensus 40 P~WnE~f~f~i~--~--~~~~L~v~V~d~~~~~~d~~IG~~~i~L~~ 82 (243)
=.|||=++|.+. + ....|.|++||.+.-++..|+|..++.|..
T Consensus 77 ~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 77 INWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred cchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 349998888774 2 245799999998766677899998887653
No 181
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=32.65 E-value=22 Score=35.63 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=20.9
Q ss_pred cCceEEEEEEEeeCCCCCCCCCCCCcEEe
Q 038128 7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY 35 (243)
Q Consensus 7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~ 35 (243)
.+++++|.|..--++...-.++.+.|||.
T Consensus 433 T~GTvHvVvNNQIgFTTDPR~aRSspYcT 461 (1017)
T KOG0450|consen 433 TGGTVHVVVNNQIGFTTDPRFARSSPYCT 461 (1017)
T ss_pred cCCeEEEEEccccccccCcccccCCCCch
Confidence 56788888876555554445677889998
No 182
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=30.28 E-value=3.7e+02 Score=23.46 Aligned_cols=7 Identities=14% Similarity=0.382 Sum_probs=3.9
Q ss_pred CCCCCce
Q 038128 232 HGHGGDY 238 (243)
Q Consensus 232 ~~~~~~~ 238 (243)
.+|+.||
T Consensus 250 g~~~~~f 256 (341)
T KOG2893|consen 250 GGYDDRF 256 (341)
T ss_pred CCccccc
Confidence 3466555
No 183
>PF08646 Rep_fac-A_C: Replication factor-A C terminal domain; InterPro: IPR013955 Replication factor A (RP-A) binds and subsequently stabilises single-stranded DNA intermediates and thus prevents complementary DNA from reannealing. It also plays an essential role in several cellular processes in DNA metabolism including replication, recombination and repair of DNA []. Replication factor-A protein is also known as Replication protein A 70 kDa DNA-binding subunit. This entry is found at the C terminus of Replication factor A.; PDB: 1L1O_F 3U50_C.
Probab=28.95 E-value=9.2 Score=30.06 Aligned_cols=41 Identities=12% Similarity=0.459 Sum_probs=28.6
Q ss_pred CCCcccceEEEEeeCCCceEEEEEEecCCCCCCceeeEEEEEch
Q 038128 38 KNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLT 81 (243)
Q Consensus 38 ~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~~~i~L~ 81 (243)
.+|.|.-.+.+.|.+....+.|.+||+. ..+|||...-.|.
T Consensus 48 ~~~~~ry~l~~~i~D~tg~~~~~~F~~~---a~~l~G~~a~el~ 88 (146)
T PF08646_consen 48 ENPKYRYRLSLKISDGTGSIWVTLFDEE---AEQLLGMSADELK 88 (146)
T ss_dssp SS-EEEEEEEEEEEETTEEEEEEEEHHH---HHHHHCCHHCCCH
T ss_pred CCeeEEEEEEEEEEeCCCeEEEEEEhHH---HHHHhCCCHHHHH
Confidence 4688888888888888889999999976 2455554433333
No 184
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=27.79 E-value=2.1e+02 Score=19.83 Aligned_cols=62 Identities=11% Similarity=0.280 Sum_probs=32.1
Q ss_pred eEEEEeeCCCceEEEEEEecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCc--cceEEEEEEEEE
Q 038128 45 KFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGK--HAGEVNIILRCA 113 (243)
Q Consensus 45 ~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~--~~G~L~l~l~~~ 113 (243)
.|.|.+.+....++|+|+|.+ ..+|-++.+ ..+ ..+.....|+-++.++. ..|.-.|++.-.
T Consensus 15 ~~~~~l~~~a~~v~v~I~d~~----G~~V~t~~~--~~~-~~G~~~~~WdG~d~~G~~~~~G~Y~~~v~a~ 78 (81)
T PF13860_consen 15 SIEYTLPEDADNVTVTIYDSN----GQVVRTISL--GSQ-SAGEHSFTWDGKDDDGNPVPDGTYTFRVTAT 78 (81)
T ss_dssp EEEEEECSSCEEEEEEEEETT----S-EEEEEEE--EEC-SSEEEEEEE-SB-TTS-B--SEEEEEEEEEE
T ss_pred EEEEeCCCcccEEEEEEEcCC----CCEEEEEEc--CCc-CCceEEEEECCCCCCcCCCCCCCEEEEEEEE
Confidence 344557777778999999975 345544433 221 12222334554444443 467766666544
No 185
>smart00686 DM13 Domain present in fly proteins (CG14681, CG12492, CG6217), worm H06A10.1 and Arabidopsis thaliana MBG8.9.
Probab=25.43 E-value=82 Score=23.75 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=18.3
Q ss_pred cceEEEEeeCCCc--eE-EEEEEecCCCCCCceeeEEEEE
Q 038128 43 QEKFMFPLIHGVN--EM-NLVVWNSNTITGDDFIGSGKVQ 79 (243)
Q Consensus 43 nE~f~f~i~~~~~--~L-~v~V~d~~~~~~d~~IG~~~i~ 79 (243)
||+++|.+....+ .+ .|.|||.+. ..-.|.+.|+
T Consensus 66 ~e~ivl~LP~~~ti~di~w~SV~~~~~---~~nFG~V~ip 102 (108)
T smart00686 66 NEDIVLRLPESLTIDDIKWFSVWCLKT---AHNFGHVLFP 102 (108)
T ss_pred CCEEEEECCCCCeEecCCEEEEEcccc---CCcceeEEcc
Confidence 5666776654432 22 467777652 1224666664
No 186
>PRK07738 flagellar protein FlaG; Provisional
Probab=24.98 E-value=1.5e+02 Score=22.78 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=29.1
Q ss_pred ccceEEEEeeCCCceEEEEEEecCCCCCCceeeEEEEEchHhh
Q 038128 42 FQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAI 84 (243)
Q Consensus 42 WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~ 84 (243)
+|..+.|.+.+....+.|+|.|.+ .+++|=+ |+-.+++
T Consensus 62 ~~~~L~F~vdeet~~~vVkVvD~~---T~EVIRQ--IPpEe~L 99 (117)
T PRK07738 62 SQTSLKFELHEKLNEYYVQVVDER---TNEVIRE--IPPKKLL 99 (117)
T ss_pred cCCceEEEEecCCCcEEEEEEECC---CCeeeee--CCCHHHH
Confidence 567889999988888999999987 3566654 6666554
No 187
>PF02248 Como_SCP: Small coat protein; InterPro: IPR003182 The virus capsid is composed 60 icosahedral units, each of which is composed of one copy of each of the two coat proteins. This family contains the small coat protein (SCP) [] of the comoviridae viral family.; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 1PGW_1 1PGL_1 1BMV_1 1NY7_1 2BFU_S.
Probab=24.40 E-value=1.2e+02 Score=25.02 Aligned_cols=50 Identities=14% Similarity=0.206 Sum_probs=23.0
Q ss_pred CCCccCceEEEEEEE-eeCCCCCCCCCCCCcEEeCCCCCcccceEEEEeeC
Q 038128 3 AANVQGQPLEVTVIA-CKGLKDTEWLSKQDPYVYGGKNPTFQEKFMFPLIH 52 (243)
Q Consensus 3 ~~~~~~~~L~V~V~~-A~~L~~~~~~g~~dPYv~~~~nP~WnE~f~f~i~~ 52 (243)
.|.=..++|++.|+- |...+..++...+..+++.+.|-.--+.+.+.+.+
T Consensus 61 taAWkrGTLh~kVv~~gssvkrsdw~st~qi~l~~s~n~~s~~a~~~~is~ 111 (182)
T PF02248_consen 61 TAAWKRGTLHFKVVMRGSSVKRSDWRSTSQISLTNSENSSSYNARSWVISE 111 (182)
T ss_dssp CECCEEEEEEEEEEEEETTS-CCC--BEEEEEEESSSSTTS--SEEEEEBS
T ss_pred HhHhhcCeEEEEEEEEecccccccccceEEEEEEecCCcccccceeEEEcC
Confidence 344567889888754 43444555554444555533333333334444443
No 188
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=23.36 E-value=2.2e+02 Score=22.76 Aligned_cols=33 Identities=3% Similarity=-0.175 Sum_probs=19.8
Q ss_pred CceEEEEEEecCCCCC-CceeeEEEEEchHhhhc
Q 038128 54 VNEMNLVVWNSNTITG-DDFIGSGKVQLTKAITQ 86 (243)
Q Consensus 54 ~~~L~v~V~d~~~~~~-d~~IG~~~i~L~~l~~~ 86 (243)
+..|.||+.++..-++ -+..+.+-+.++++...
T Consensus 82 Gaai~fE~kH~K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 82 GAAIFFEFKHYKPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp T-EEEEEEEEEETTTTCEEEEEEEEEEGGG--SE
T ss_pred ceEEEEEEEeeeccceeeeeeEEEEEEhhhccCC
Confidence 4568888888654332 34567788888876544
No 189
>cd04476 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-C, RPA1 contains three other OB folds: DBD-A, DBD-B, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in DNA binding and trimerization. It contains two structural insertions not found to date in other OB-folds: a zinc ribbon and a three-helix bundle. RPA1 DBD-C also contains a Cys4-type zinc-binding motif, which plays a role in the ssDNA binding fun
Probab=22.21 E-value=40 Score=26.93 Aligned_cols=34 Identities=15% Similarity=0.363 Sum_probs=26.7
Q ss_pred CCcccceEEEEeeCCCceEEEEEEecCCCCCCceeeE
Q 038128 39 NPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGS 75 (243)
Q Consensus 39 nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~ 75 (243)
+|.|.-.+.+.|.+....+.+.+||.. ..++||.
T Consensus 63 ~~~~ry~l~~~i~D~Tg~~~~~~F~~~---ae~l~G~ 96 (166)
T cd04476 63 NPEYRYILSLNVADHTGEAWLTLFDEV---AEQIFGK 96 (166)
T ss_pred CccEEEEEEEEEEeCCCCEEEEEehHH---HHHHhCC
Confidence 788888888888888888999999865 3556665
No 190
>PF08877 MepB: MepB protein; InterPro: IPR011235 This is a family of uncharacterised bacterial proteins.
Probab=21.61 E-value=2.4e+02 Score=21.83 Aligned_cols=33 Identities=12% Similarity=0.044 Sum_probs=23.4
Q ss_pred EeeCCCceEEEEEEecCCCCCCceeeEEEEEchHhhhcC
Q 038128 49 PLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQG 87 (243)
Q Consensus 49 ~i~~~~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~ 87 (243)
+..+....|.|.|.|.+ ..|...++.+.|+..+
T Consensus 50 ~~~d~~d~liI~v~d~~------~~G~FiFpk~~L~~kg 82 (123)
T PF08877_consen 50 DEEDSFDFLIINVIDGD------RFGQFIFPKEVLIEKG 82 (123)
T ss_pred ccccCCCEEEEEEEeCC------ceeEEEecHHHHHHCC
Confidence 33455567888888754 3699999988776654
No 191
>PF15084 DUF4550: Domain of unknown function (DUF4550)
Probab=21.10 E-value=71 Score=23.82 Aligned_cols=27 Identities=11% Similarity=0.411 Sum_probs=19.8
Q ss_pred CCCcccceEEEEeeCC------CceEEEEEEec
Q 038128 38 KNPTFQEKFMFPLIHG------VNEMNLVVWNS 64 (243)
Q Consensus 38 ~nP~WnE~f~f~i~~~------~~~L~v~V~d~ 64 (243)
.-..|.++|.+.+..+ .-.|+|.|||.
T Consensus 50 ~Wv~W~~~~~i~vt~e~l~kl~~h~i~~kiwDt 82 (99)
T PF15084_consen 50 VWVSWTHTFNINVTKELLKKLYFHKITLKIWDT 82 (99)
T ss_pred EEEEEEEEEEeccCHHHHHHHHcCeEEEEEEcc
Confidence 3477899999888533 23599999985
No 192
>PF08530 PepX_C: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; InterPro: IPR013736 This domain is found at the C terminus of cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). The domain, which is a beta sandwich, is also found in serine peptidases belonging to MEROPS peptidase family S15: Xaa-Pro dipeptidyl-peptidases. Members of this entry, that are not characterised as peptidases, show extensive low-level similarity to the Xaa-Pro dipeptidyl-peptidases. ; GO: 0008239 dipeptidyl-peptidase activity; PDB: 2B4K_D 1RYY_F 2B9V_O 1NX9_B 3PUH_B 3I2I_A 3I2G_A 1JU4_A 3I2K_A 1L7R_A ....
Probab=21.00 E-value=2.3e+02 Score=23.33 Aligned_cols=28 Identities=7% Similarity=0.084 Sum_probs=17.1
Q ss_pred CceEEEEEEecCCCCCCceeeEEEEEch
Q 038128 54 VNEMNLVVWNSNTITGDDFIGSGKVQLT 81 (243)
Q Consensus 54 ~~~L~v~V~d~~~~~~d~~IG~~~i~L~ 81 (243)
+..|.+.|+|.+..++..+|-...+.+.
T Consensus 110 d~~l~v~L~dv~pdG~~~~it~G~l~~s 137 (218)
T PF08530_consen 110 DADLFVRLSDVDPDGTSTLITRGWLRAS 137 (218)
T ss_dssp S-EEEEEEEEEETTSSEEEEEEEEEEGG
T ss_pred CcEEEEEEEEeCCCCCEEEccceEEEcc
Confidence 3457777777766665566666555554
No 193
>PF11754 Velvet: Velvet factor; InterPro: IPR021740 The velvet factor is conserved in many fungal species and is found to have gained different roles depending on the organism's need, expanding the conserved role in developmental programmes []. The velvet factor orthologues can be adapted to the fungal-specific life cycle and may be involved in diverse functions such as sclerotia formation and toxin production, as in Aspergillus parasiticus [], nutrition-dependent sporulation, as in A. fumigatus [], or the microconidia-to-macroconidia ratio and cell wall formation, as in the heterothallic fungus Gibberella moniliformis (Fusarium verticillioides).
Probab=20.71 E-value=2.5e+02 Score=23.40 Aligned_cols=48 Identities=8% Similarity=0.017 Sum_probs=33.5
Q ss_pred CceeeEEEEEchHhhhcCCC--CCceeecCCCCccceEEEEEEEEEecCC
Q 038128 70 DDFIGSGKVQLTKAITQGYD--DNPWPLWTRSGKHAGEVNIILRCANVWN 117 (243)
Q Consensus 70 d~~IG~~~i~L~~l~~~~~~--~~~~~L~~~~g~~~G~L~l~l~~~~~~~ 117 (243)
+.++|.+...+..+...+.. ..+|..-+-+-+..|.-+|++++.+...
T Consensus 98 r~L~Gs~vss~~~l~d~~~~~~g~fFvF~DLsVR~eG~frLrf~l~~i~~ 147 (203)
T PF11754_consen 98 RNLVGSLVSSAFRLKDPDGKEPGGFFVFPDLSVRTEGRFRLRFSLFDIGP 147 (203)
T ss_pred ccCcccEeeeeEEecCCCCCeEEEEEEeCCceECcCCEEEEEEEEEEecC
Confidence 57889988887766555544 3455444434478899999999887655
No 194
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=20.67 E-value=22 Score=36.90 Aligned_cols=96 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred eEEEEE-EEeeCCCCCCCCCC--CCcEEe-----------------------CCCCCcccceEEEEeeCCCceEEEEEEe
Q 038128 10 PLEVTV-IACKGLKDTEWLSK--QDPYVY-----------------------GGKNPTFQEKFMFPLIHGVNEMNLVVWN 63 (243)
Q Consensus 10 ~L~V~V-~~A~~L~~~~~~g~--~dPYv~-----------------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d 63 (243)
...||+ +-|.||......|. +.|-+. ..+.=.|.|+|. ...++....-|
T Consensus 687 ~y~VTLQIPaanL~~nrkrGa~vsEPaI~VrR~g~gsQiWt~ekLenkLiDMRd~Yqe~ke~~~-----~~~~~~~k~~D 761 (1714)
T KOG0241|consen 687 DYQVTLQIPAANLSANRKRGAFVSEPAIQVRRKGKGSQIWTIEKLENKLIDMRDLYQEWKEKVP-----PAKRLYGKRGD 761 (1714)
T ss_pred ceeEEEEcchhcCCcccccCceeccceeEEEecCCCceeeeHHHhHhHHhhHHHHHHHHHhcCC-----chhhhccccCC
Q ss_pred --cCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCccceEEEEEE
Q 038128 64 --SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIIL 110 (243)
Q Consensus 64 --~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l~l 110 (243)
.+.-..+.+||.+.|=|+.|+.+-...-.+.+++..|+..|.|+|++
T Consensus 762 PFyesQEnhnLiGVANvFLE~LF~DvkL~Y~vPIIsQqGEVAGRLhVev 810 (1714)
T KOG0241|consen 762 PFYESQENHNLIGVANVFLEVLFHDVKLQYAVPIISQQGEVAGRLHVEV 810 (1714)
T ss_pred ccccccccccchhhHHHHHHHHHhhheeccccceecccccccceeEEEE
Done!