Query 038129
Match_columns 118
No_of_seqs 110 out of 303
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 07:53:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038129.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038129hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03195 DUF260: Protein of un 100.0 2.7E-55 5.9E-60 308.9 8.8 101 1-101 1-101 (101)
2 COG3416 Uncharacterized protei 83.5 3.8 8.2E-05 32.9 5.8 65 42-106 12-76 (233)
3 PRK10265 chaperone-modulator p 81.7 3.6 7.8E-05 28.4 4.6 34 74-107 67-100 (101)
4 PF09006 Surfac_D-trimer: Lung 78.0 6.2 0.00014 24.4 4.2 27 80-106 1-27 (46)
5 PF12325 TMF_TATA_bd: TATA ele 73.8 9 0.00019 27.7 4.9 40 74-113 12-51 (120)
6 PF07106 TBPIP: Tat binding pr 73.7 1.7 3.7E-05 32.2 1.1 84 24-107 17-108 (169)
7 PF11333 DUF3135: Protein of u 71.8 20 0.00043 24.3 5.9 66 25-94 15-82 (83)
8 PRK10803 tol-pal system protei 68.8 6.6 0.00014 31.4 3.5 36 78-113 54-89 (263)
9 PF05377 FlaC_arch: Flagella a 68.0 8.2 0.00018 24.6 3.2 33 82-114 4-36 (55)
10 KOG1655 Protein involved in va 67.5 16 0.00035 29.1 5.4 53 34-106 2-54 (218)
11 PF06698 DUF1192: Protein of u 64.6 18 0.00039 23.2 4.3 28 80-107 23-50 (59)
12 PF05308 Mito_fiss_reg: Mitoch 63.8 8 0.00017 31.3 3.1 25 84-108 121-145 (253)
13 PLN02523 galacturonosyltransfe 63.1 40 0.00087 30.5 7.6 59 43-106 144-204 (559)
14 PF13334 DUF4094: Domain of un 62.7 8.1 0.00018 26.8 2.6 25 76-100 71-95 (95)
15 PHA02047 phage lambda Rz1-like 62.3 23 0.0005 25.2 4.8 38 74-111 17-60 (101)
16 PF06295 DUF1043: Protein of u 61.1 17 0.00037 26.1 4.2 36 80-115 27-62 (128)
17 PF09849 DUF2076: Uncharacteri 60.5 28 0.0006 28.1 5.7 62 42-103 12-73 (247)
18 smart00150 SPEC Spectrin repea 60.3 37 0.00081 21.1 5.3 45 70-114 23-67 (101)
19 PF06305 DUF1049: Protein of u 59.4 25 0.00055 21.7 4.3 26 79-104 42-67 (68)
20 PF14197 Cep57_CLD_2: Centroso 58.7 24 0.00052 23.1 4.2 33 75-107 37-69 (69)
21 PRK00888 ftsB cell division pr 58.3 23 0.00049 24.8 4.3 30 79-108 28-57 (105)
22 KOG4098 Molecular chaperone Pr 58.3 21 0.00046 26.7 4.3 61 40-100 49-115 (140)
23 PF05377 FlaC_arch: Flagella a 56.6 9.8 0.00021 24.2 2.0 19 79-97 15-33 (55)
24 PF15397 DUF4618: Domain of un 56.0 18 0.00039 29.5 3.9 57 41-105 52-108 (258)
25 PRK11677 hypothetical protein; 55.9 25 0.00054 26.0 4.3 37 79-115 30-66 (134)
26 PF10883 DUF2681: Protein of u 55.5 29 0.00062 24.0 4.3 29 80-108 32-60 (87)
27 PF04977 DivIC: Septum formati 54.7 43 0.00093 21.0 4.9 30 80-109 19-48 (80)
28 PF05565 Sipho_Gp157: Siphovir 53.8 28 0.00061 25.8 4.4 70 42-115 13-84 (162)
29 PF15300 INT_SG_DDX_CT_C: INTS 52.9 15 0.00033 24.0 2.5 30 37-66 18-51 (65)
30 PHA02562 46 endonuclease subun 51.2 23 0.00051 30.2 4.1 22 19-40 142-163 (562)
31 PF12097 DUF3573: Protein of u 51.1 20 0.00043 30.8 3.5 22 79-100 43-64 (383)
32 PF04977 DivIC: Septum formati 50.6 39 0.00086 21.1 4.2 26 79-104 25-50 (80)
33 PRK00451 glycine dehydrogenase 49.5 16 0.00036 30.3 2.8 35 19-54 2-36 (447)
34 cd04766 HTH_HspR Helix-Turn-He 49.3 38 0.00081 22.4 4.1 31 71-102 59-89 (91)
35 cd00089 HR1 Protein kinase C-r 48.9 38 0.00082 21.6 3.9 29 78-106 42-70 (72)
36 PF13591 MerR_2: MerR HTH fami 48.2 25 0.00055 23.3 3.1 24 76-99 61-84 (84)
37 PLN02742 Probable galacturonos 47.9 1.2E+02 0.0025 27.5 7.9 71 32-106 111-182 (534)
38 KOG4552 Vitamin-D-receptor int 47.5 61 0.0013 26.4 5.6 68 32-107 47-121 (272)
39 PF04728 LPP: Lipoprotein leuc 46.7 58 0.0012 20.8 4.4 26 80-105 12-37 (56)
40 PF00170 bZIP_1: bZIP transcri 46.5 56 0.0012 20.3 4.4 35 79-113 27-61 (64)
41 COG5509 Uncharacterized small 46.4 46 0.00099 21.8 3.9 25 80-104 27-51 (65)
42 PF06005 DUF904: Protein of un 46.1 43 0.00093 22.1 3.9 33 75-107 15-47 (72)
43 PF06818 Fez1: Fez1; InterPro 45.3 43 0.00093 26.5 4.4 35 77-111 9-43 (202)
44 PF12709 Kinetocho_Slk19: Cent 45.0 56 0.0012 22.6 4.4 38 77-114 48-85 (87)
45 PF04012 PspA_IM30: PspA/IM30 44.6 49 0.0011 25.2 4.6 50 56-112 8-57 (221)
46 PF03242 LEA_3: Late embryogen 44.6 7.4 0.00016 27.1 0.0 19 62-80 58-76 (93)
47 KOG4196 bZIP transcription fac 44.4 40 0.00087 25.1 3.9 59 52-110 53-113 (135)
48 PF10828 DUF2570: Protein of u 44.0 32 0.0007 24.0 3.2 34 73-106 13-46 (110)
49 PF11365 DUF3166: Protein of u 43.6 55 0.0012 23.0 4.3 35 81-115 4-38 (96)
50 smart00338 BRLZ basic region l 43.0 81 0.0017 19.5 4.8 31 79-109 27-57 (65)
51 PF08227 DASH_Hsk3: DASH compl 42.6 76 0.0016 19.3 4.3 30 79-108 3-32 (45)
52 KOG3478 Prefoldin subunit 6, K 42.5 1.1E+02 0.0024 22.3 5.8 31 79-109 84-114 (120)
53 PRK09039 hypothetical protein; 41.9 32 0.00069 28.7 3.4 34 77-110 136-169 (343)
54 PF04420 CHD5: CHD5-like prote 41.7 46 0.001 24.7 3.9 38 76-113 64-101 (161)
55 PF05064 Nsp1_C: Nsp1-like C-t 41.5 64 0.0014 22.7 4.5 40 78-117 57-96 (116)
56 TIGR02209 ftsL_broad cell divi 41.1 69 0.0015 20.5 4.3 23 81-103 34-56 (85)
57 PF06156 DUF972: Protein of un 40.8 50 0.0011 23.3 3.8 33 83-115 20-52 (107)
58 PRK10884 SH3 domain-containing 40.4 54 0.0012 25.6 4.3 34 79-112 133-166 (206)
59 PF11471 Sugarporin_N: Maltopo 40.3 68 0.0015 20.4 4.0 28 82-109 29-56 (60)
60 PRK15422 septal ring assembly 40.3 61 0.0013 22.1 4.0 23 77-99 17-39 (79)
61 PF06295 DUF1043: Protein of u 39.3 39 0.00085 24.2 3.1 23 85-107 25-47 (128)
62 PF13600 DUF4140: N-terminal d 38.5 67 0.0014 21.5 4.1 32 76-107 68-99 (104)
63 PF06696 Strep_SA_rep: Strepto 38.4 67 0.0015 17.3 3.9 22 83-104 3-24 (25)
64 PRK14127 cell division protein 37.8 86 0.0019 22.4 4.6 48 47-104 21-70 (109)
65 COG0339 Dcp Zn-dependent oligo 36.7 17 0.00037 33.5 1.1 28 16-43 355-384 (683)
66 PF05529 Bap31: B-cell recepto 35.9 59 0.0013 24.3 3.8 36 78-113 154-189 (192)
67 cd01111 HTH_MerD Helix-Turn-He 35.8 79 0.0017 21.8 4.1 28 76-103 78-105 (107)
68 PF05120 GvpG: Gas vesicle pro 35.2 46 0.001 22.4 2.8 34 72-105 8-41 (79)
69 TIGR01010 BexC_CtrB_KpsE polys 35.1 83 0.0018 25.7 4.8 71 40-110 130-202 (362)
70 PF14282 FlxA: FlxA-like prote 34.2 82 0.0018 21.9 4.0 22 81-102 54-75 (106)
71 PTZ00464 SNF-7-like protein; P 34.1 1.7E+02 0.0037 23.0 6.2 27 78-104 25-51 (211)
72 PF11413 HIF-1: Hypoxia-induci 33.2 11 0.00024 21.8 -0.4 13 17-31 13-25 (34)
73 KOG3966 p53-mediated apoptosis 33.2 54 0.0012 27.7 3.4 76 37-113 3-79 (360)
74 PF07334 IFP_35_N: Interferon- 32.8 72 0.0016 21.5 3.4 25 80-104 2-26 (76)
75 PF14257 DUF4349: Domain of un 32.7 64 0.0014 25.3 3.6 31 76-106 160-190 (262)
76 PF11461 RILP: Rab interacting 32.7 1.1E+02 0.0024 19.7 4.1 25 82-106 7-31 (60)
77 PF00435 Spectrin: Spectrin re 32.4 1.3E+02 0.0027 18.6 7.5 58 56-113 11-69 (105)
78 PRK11677 hypothetical protein; 32.0 60 0.0013 23.9 3.1 23 85-107 29-51 (134)
79 COG3879 Uncharacterized protei 31.5 76 0.0017 25.8 3.9 41 63-105 44-84 (247)
80 PF04859 DUF641: Plant protein 31.3 1.2E+02 0.0026 22.3 4.6 33 80-112 96-128 (131)
81 PF12001 DUF3496: Domain of un 31.1 77 0.0017 22.8 3.5 25 82-106 4-36 (111)
82 PF06152 Phage_min_cap2: Phage 31.1 1.6E+02 0.0035 24.7 6.0 73 12-116 276-359 (361)
83 PF10883 DUF2681: Protein of u 30.9 1.5E+02 0.0033 20.3 4.8 29 78-106 16-44 (87)
84 PF04706 Dickkopf_N: Dickkopf 30.5 21 0.00045 22.3 0.4 15 1-15 22-36 (52)
85 PF15483 DUF4641: Domain of un 30.5 61 0.0013 28.5 3.4 32 73-105 414-445 (445)
86 PF11387 DUF2795: Protein of u 30.5 40 0.00087 20.0 1.7 31 22-52 6-36 (44)
87 PRK13922 rod shape-determining 30.0 1.3E+02 0.0028 23.7 4.9 39 66-104 54-95 (276)
88 PF13874 Nup54: Nucleoporin co 30.0 1.3E+02 0.0029 21.6 4.7 37 79-115 52-88 (141)
89 COG1729 Uncharacterized protei 29.6 50 0.0011 27.0 2.6 33 79-112 57-89 (262)
90 PF10205 KLRAQ: Predicted coil 29.5 96 0.0021 22.0 3.7 36 81-116 29-64 (102)
91 PF08606 Prp19: Prp19/Pso4-lik 29.3 1.5E+02 0.0033 19.7 4.4 30 77-106 7-36 (70)
92 PF07701 HNOBA: Heme NO bindin 29.2 1E+02 0.0022 24.1 4.2 34 82-115 176-210 (219)
93 COG3105 Uncharacterized protei 29.2 1.4E+02 0.003 22.4 4.6 32 81-112 37-68 (138)
94 PRK00888 ftsB cell division pr 29.1 69 0.0015 22.3 2.9 28 87-114 29-56 (105)
95 PF04699 P16-Arc: ARP2/3 compl 29.1 88 0.0019 23.5 3.7 45 19-63 63-112 (152)
96 PF08148 DSHCT: DSHCT (NUC185) 28.8 1.2E+02 0.0027 22.6 4.5 57 44-101 32-89 (180)
97 PRK11239 hypothetical protein; 28.7 95 0.0021 24.9 3.9 31 77-107 182-212 (215)
98 TIGR02780 TrbJ_Ti P-type conju 28.7 1.3E+02 0.0028 23.8 4.7 41 71-111 26-69 (246)
99 TIGR02209 ftsL_broad cell divi 28.7 1.1E+02 0.0025 19.5 3.8 27 85-111 24-50 (85)
100 PRK10803 tol-pal system protei 28.4 75 0.0016 25.4 3.4 28 89-116 58-85 (263)
101 PRK09413 IS2 repressor TnpA; R 28.4 1.2E+02 0.0025 21.1 4.1 26 80-105 80-105 (121)
102 PF14653 IGFL: Insulin growth 28.2 31 0.00067 24.0 1.0 16 9-24 42-57 (89)
103 PF11853 DUF3373: Protein of u 28.2 1.1E+02 0.0024 27.2 4.7 32 70-102 17-48 (489)
104 PF02185 HR1: Hr1 repeat; Int 28.2 1.6E+02 0.0035 18.5 4.4 31 79-109 34-64 (70)
105 PRK13169 DNA replication intia 28.1 1.1E+02 0.0024 21.8 3.9 19 81-99 11-29 (110)
106 PRK15396 murein lipoprotein; P 28.1 1E+02 0.0022 20.8 3.5 28 79-106 26-53 (78)
107 PF08657 DASH_Spc34: DASH comp 28.1 3.3E+02 0.007 22.1 7.8 72 32-109 140-211 (259)
108 cd06457 M3A_MIP Peptidase M3 m 27.8 22 0.00049 30.4 0.3 25 17-41 125-151 (458)
109 PLN02910 polygalacturonate 4-a 27.8 4.6E+02 0.01 24.4 8.5 69 32-107 234-304 (657)
110 PF06156 DUF972: Protein of un 27.7 1.8E+02 0.004 20.4 4.9 29 77-105 21-49 (107)
111 PF05965 FYRC: F/Y rich C-term 27.6 52 0.0011 21.5 2.0 24 31-54 51-76 (86)
112 PRK13169 DNA replication intia 27.5 1.8E+02 0.004 20.7 4.9 35 80-114 17-51 (110)
113 PF12718 Tropomyosin_1: Tropom 26.7 1.3E+02 0.0028 22.0 4.1 28 79-106 36-63 (143)
114 PF13863 DUF4200: Domain of un 26.4 1.6E+02 0.0034 20.2 4.4 55 53-112 61-115 (126)
115 PF04999 FtsL: Cell division p 26.3 1.6E+02 0.0035 19.5 4.3 28 80-107 44-71 (97)
116 PRK13879 conjugal transfer pro 26.2 1.5E+02 0.0032 24.1 4.7 42 71-112 28-72 (253)
117 PF12325 TMF_TATA_bd: TATA ele 26.2 1.3E+02 0.0027 21.7 3.9 30 78-107 30-59 (120)
118 PLN02829 Probable galacturonos 26.1 3.9E+02 0.0084 24.8 7.8 68 32-106 220-289 (639)
119 PF00172 Zn_clus: Fungal Zn(2) 25.9 35 0.00077 19.4 0.8 14 1-14 2-15 (40)
120 PRK10884 SH3 domain-containing 25.7 84 0.0018 24.6 3.1 17 81-97 96-112 (206)
121 PF12808 Mto2_bdg: Micro-tubul 25.4 1.8E+02 0.0039 18.2 5.6 43 55-98 7-49 (52)
122 PF04340 DUF484: Protein of un 25.4 1.6E+02 0.0034 22.6 4.6 57 41-106 10-68 (225)
123 TIGR02977 phageshock_pspA phag 24.8 1.8E+02 0.004 22.3 4.9 43 56-98 9-51 (219)
124 KOG0999 Microtubule-associated 24.6 1.4E+02 0.0031 27.6 4.7 52 59-114 92-143 (772)
125 PF07716 bZIP_2: Basic region 24.6 1.7E+02 0.0036 17.6 4.4 26 80-105 27-52 (54)
126 PF07798 DUF1640: Protein of u 24.3 2.4E+02 0.0053 20.9 5.4 63 41-103 6-69 (177)
127 PF02985 HEAT: HEAT repeat; I 24.2 86 0.0019 16.5 2.2 22 41-62 4-25 (31)
128 PRK13749 transcriptional regul 23.9 2.5E+02 0.0054 20.1 5.1 35 80-114 85-119 (121)
129 cd07920 Pumilio Pumilio-family 23.4 2.2E+02 0.0047 22.3 5.2 42 37-79 164-205 (322)
130 PF09789 DUF2353: Uncharacteri 23.4 1.1E+02 0.0023 25.8 3.5 32 76-107 194-225 (319)
131 PLN03188 kinesin-12 family pro 23.4 3.7E+02 0.008 27.1 7.4 82 20-101 382-469 (1320)
132 PF08158 NUC130_3NT: NUC130/3N 22.8 93 0.002 19.3 2.4 37 18-63 5-45 (52)
133 PF11336 DUF3138: Protein of u 22.8 1.2E+02 0.0025 27.2 3.7 29 77-105 24-52 (514)
134 PRK10698 phage shock protein P 22.7 2.1E+02 0.0045 22.4 4.9 44 56-99 9-52 (222)
135 PRK10280 dipeptidyl carboxypep 22.7 36 0.00077 31.1 0.6 26 17-42 355-383 (681)
136 PRK13874 conjugal transfer pro 22.3 2E+02 0.0044 22.8 4.8 42 71-112 27-71 (230)
137 TIGR03017 EpsF chain length de 22.1 1.5E+02 0.0032 24.6 4.2 33 76-108 169-201 (444)
138 PF14257 DUF4349: Domain of un 21.7 2.1E+02 0.0045 22.4 4.7 30 87-116 164-193 (262)
139 TIGR02894 DNA_bind_RsfA transc 21.7 1.7E+02 0.0037 22.4 4.1 27 80-106 113-139 (161)
140 PF10506 MCC-bdg_PDZ: PDZ doma 21.4 2.1E+02 0.0045 18.7 3.9 31 82-112 2-32 (67)
141 PF05308 Mito_fiss_reg: Mitoch 21.3 1.1E+02 0.0023 24.8 3.0 23 76-98 120-142 (253)
142 PF07208 DUF1414: Protein of u 21.3 89 0.0019 19.1 2.0 20 42-61 16-36 (44)
143 cd09071 FAR_C C-terminal domai 21.0 44 0.00095 21.7 0.7 20 36-55 46-65 (92)
144 PF11853 DUF3373: Protein of u 20.7 89 0.0019 27.8 2.6 31 84-115 24-54 (489)
145 PRK11519 tyrosine kinase; Prov 20.6 1.5E+02 0.0032 26.9 4.1 32 78-109 267-298 (719)
146 TIGR00293 prefoldin, archaeal 20.6 2.5E+02 0.0054 19.3 4.5 27 80-106 8-34 (126)
147 PF08172 CASP_C: CASP C termin 20.6 1.9E+02 0.004 23.3 4.3 33 82-114 97-129 (248)
148 PF04508 Pox_A_type_inc: Viral 20.3 1.6E+02 0.0034 15.6 2.8 17 80-96 3-19 (23)
149 cd00584 Prefoldin_alpha Prefol 20.1 2.3E+02 0.005 19.6 4.3 28 79-106 7-34 (129)
150 PF02050 FliJ: Flagellar FliJ 20.1 2.5E+02 0.0055 18.0 4.6 30 77-106 51-80 (123)
151 PRK01203 prefoldin subunit alp 20.0 1.3E+02 0.0028 22.1 3.0 25 80-104 9-33 (130)
No 1
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=100.00 E-value=2.7e-55 Score=308.90 Aligned_cols=101 Identities=53% Similarity=1.042 Sum_probs=99.7
Q ss_pred CchhchHhhhCCCCCCccCCCCCCCCchhHHHHHHHhccchhhhhhhCCCchhHHHHHHHHHHHHhhhccCCCcCcHHHH
Q 038129 1 RCAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADAICIEAECRVQDPVYGCVRMI 80 (118)
Q Consensus 1 ~CaaCk~~Rr~C~~~C~laPyFp~~~~~~F~~vhkvFG~sni~k~L~~l~~~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I 80 (118)
+|||||||||||+++|+||||||++++++|++||||||+|||+|||+++||++|+++|+||+|||++|.+||||||+|+|
T Consensus 1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i 80 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII 80 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038129 81 SLLQQQIHNAESQLVKARAEI 101 (118)
Q Consensus 81 ~~Lq~ql~~~~~EL~~~~~~l 101 (118)
+.|+||++++++||+.++++|
T Consensus 81 ~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 81 SQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999875
No 2
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.50 E-value=3.8 Score=32.91 Aligned_cols=65 Identities=22% Similarity=0.289 Sum_probs=57.0
Q ss_pred hhhhhhCCCchhHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 42 VGNMLQDLPVELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 42 i~k~L~~l~~~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
+..-|+......|+..+..||-||-++.-|--|=-+-.|..+++-|..+..+|+.++.+++..+.
T Consensus 12 lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~ 76 (233)
T COG3416 12 LFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQA 76 (233)
T ss_pred HHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445666777899999999999999999999999999999999999999999999999987765
No 3
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=81.72 E-value=3.6 Score=28.44 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=30.1
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 038129 74 YGCVRMISLLQQQIHNAESQLVKARAEIAVLGSH 107 (118)
Q Consensus 74 ~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~ 107 (118)
.-.+++|..|-.++.+++.|+..++++|..|..+
T Consensus 67 ~~gialvl~LLd~i~~Lr~el~~L~~~l~~~~~~ 100 (101)
T PRK10265 67 WPGIAVALTLLDEIAHLKQENRLLRQRLSRFVAH 100 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3468899999999999999999999999988754
No 4
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=77.99 E-value=6.2 Score=24.36 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
|..|.+|+..++.++..+++-+..|+-
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999988874
No 5
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=73.83 E-value=9 Score=27.71 Aligned_cols=40 Identities=30% Similarity=0.419 Sum_probs=33.3
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhh
Q 038129 74 YGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRH 113 (118)
Q Consensus 74 ~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~ 113 (118)
...+++|..|+.+|.+++.|+..++.+++....+...+..
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~ 51 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELRE 51 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467889999999999999999999999988877666554
No 6
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=73.68 E-value=1.7 Score=32.17 Aligned_cols=84 Identities=19% Similarity=0.137 Sum_probs=51.6
Q ss_pred CCCchhHHHHHHHhccchhhhhhhCCCchhH---HHHHHHHHHHHhhhccCCCcCc-----HHHHHHHHHHHHHHHHHHH
Q 038129 24 ANDPHRFACVHKIYGSSKVGNMLQDLPVELR---AEAADAICIEAECRVQDPVYGC-----VRMISLLQQQIHNAESQLV 95 (118)
Q Consensus 24 ~~~~~~F~~vhkvFG~sni~k~L~~l~~~~R---~~a~~SL~YEA~~R~~DPV~Gc-----~G~I~~Lq~ql~~~~~EL~ 95 (118)
.+-..-|.|.|+-||-+.|.|.|..|-.+.+ ...=.+.||=++--..+-+..- -.-|..|+.++..++.++.
T Consensus 17 ys~~di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k 96 (169)
T PF07106_consen 17 YSAQDIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVK 96 (169)
T ss_pred CcHHHHHHHHHhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445668999999999999999987754432 1122334444433322211111 2347777777777777777
Q ss_pred HHHHHHHHhhch
Q 038129 96 KARAEIAVLGSH 107 (118)
Q Consensus 96 ~~~~~la~~~~~ 107 (118)
.++++|+.....
T Consensus 97 ~l~~eL~~L~~~ 108 (169)
T PF07106_consen 97 SLEAELASLSSE 108 (169)
T ss_pred HHHHHHHHHhcC
Confidence 777777776653
No 7
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=71.81 E-value=20 Score=24.33 Aligned_cols=66 Identities=23% Similarity=0.409 Sum_probs=50.2
Q ss_pred CCchhHHHHHHHhccchhhhhhhCCCchh--HHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHH
Q 038129 25 NDPHRFACVHKIYGSSKVGNMLQDLPVEL--RAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQL 94 (118)
Q Consensus 25 ~~~~~F~~vhkvFG~sni~k~L~~l~~~~--R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL 94 (118)
++|+.|....+ .-+-.++...|++. |-.++.+=|=---.|.++|+..|+-+...+..++..+...|
T Consensus 15 ~dPe~fe~lr~----~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~knP~~~~~~l~~~m~~~~~~l~~~l 82 (83)
T PF11333_consen 15 NDPEAFEQLRQ----ELIEEMIESAPEEMQPRLRALQFHIDMQRSRCKNPLHRCVLLSRMMYEQFYKLNDAL 82 (83)
T ss_pred hCHHHHHHHHH----HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 46778876554 45667888888775 45566666666667899999999999999999998877654
No 8
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=68.76 E-value=6.6 Score=31.45 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhh
Q 038129 78 RMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRH 113 (118)
Q Consensus 78 G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~ 113 (118)
..+..|++||.+++.|+..++.+++...-+-+++..
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 466789999999999999999888876665555544
No 9
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=68.03 E-value=8.2 Score=24.60 Aligned_cols=33 Identities=12% Similarity=0.259 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhc
Q 038129 82 LLQQQIHNAESQLVKARAEIAVLGSHAQELRHH 114 (118)
Q Consensus 82 ~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~ 114 (118)
.|++.+..+...++.++.++...+..-..+-..
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~en 36 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEEN 36 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433333333
No 10
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.51 E-value=16 Score=29.12 Aligned_cols=53 Identities=19% Similarity=0.319 Sum_probs=31.7
Q ss_pred HHHhccchhhhhhhCCCchhHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 34 HKIYGSSKVGNMLQDLPVELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 34 hkvFG~sni~k~L~~l~~~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
||+||..+- ..||..-.++..|+=-- --.+...|.++.+||...+.+|...|.
T Consensus 2 nRiFG~~k~-----k~p~psL~dai~~v~~r---------------~dSve~KIskLDaeL~k~~~Qi~k~R~ 54 (218)
T KOG1655|consen 2 NRIFGRGKP-----KEPPPSLQDAIDSVNKR---------------SDSVEKKISKLDAELCKYKDQIKKTRP 54 (218)
T ss_pred cccccCCCC-----CCCChhHHHHHHHHHHh---------------hhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 789999873 34554455555553211 124566666666777766666666654
No 11
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=64.62 E-value=18 Score=23.24 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAVLGSH 107 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~~~~~ 107 (118)
+-.|+..|..+++|++.++++++.-+.+
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~ 50 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSAS 50 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999988865543
No 12
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=63.78 E-value=8 Score=31.29 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchh
Q 038129 84 QQQIHNAESQLVKARAEIAVLGSHA 108 (118)
Q Consensus 84 q~ql~~~~~EL~~~~~~la~~~~~~ 108 (118)
.++|..||.||+.+|+|||.+...+
T Consensus 121 lqKIsALEdELs~LRaQIA~IV~~q 145 (253)
T PF05308_consen 121 LQKISALEDELSRLRAQIAKIVAAQ 145 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3577888889999999998877644
No 13
>PLN02523 galacturonosyltransferase
Probab=63.08 E-value=40 Score=30.47 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=47.8
Q ss_pred hhhhhCCCc--hhHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 43 GNMLQDLPV--ELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 43 ~k~L~~l~~--~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
...+.++|+ .+|..+|+.++++|.. .|.+..+|..|...+..+++++..++.+-+.+..
T Consensus 144 ~~~~~~~~~~~~~~~k~~~~~~~~a~~-----~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~~~~ 204 (559)
T PLN02523 144 EDVLRQFEKEVKERVKVARQMIAESKE-----SFDNQLKIQKLKDTIFAVNEQLTKAKKNGAFASL 204 (559)
T ss_pred hHHHhhcchhHHHHHHHHHHHHHHHHh-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577775 4689999999999993 4556789999999999999999999888766554
No 14
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=62.74 E-value=8.1 Score=26.80 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=19.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 038129 76 CVRMISLLQQQIHNAESQLVKARAE 100 (118)
Q Consensus 76 c~G~I~~Lq~ql~~~~~EL~~~~~~ 100 (118)
-.-.|..|...|..++.||+.+|++
T Consensus 71 Th~aIq~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 71 THEAIQSLDKTISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456788888888888888888753
No 15
>PHA02047 phage lambda Rz1-like protein
Probab=62.26 E-value=23 Score=25.18 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=26.8
Q ss_pred cCcHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhchhhhh
Q 038129 74 YGCVRMISLL------QQQIHNAESQLVKARAEIAVLGSHAQEL 111 (118)
Q Consensus 74 ~Gc~G~I~~L------q~ql~~~~~EL~~~~~~la~~~~~~~~~ 111 (118)
.|.+|.+... +...+++.++|+.++.++..|+.+=+.+
T Consensus 17 g~~y~~~~~~r~~g~~h~~a~~la~qLE~a~~r~~~~Q~~V~~l 60 (101)
T PHA02047 17 GASYGFVQSYRALGIAHEEAKRQTARLEALEVRYATLQRHVQAV 60 (101)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666644 4477888888888888888888765444
No 16
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=61.09 E-value=17 Score=26.10 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhcc
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHHV 115 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~~ 115 (118)
...|+.+|.+++.||+.-|+++..|=...++|+..+
T Consensus 27 q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l 62 (128)
T PF06295_consen 27 QAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNL 62 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777776666666665543
No 17
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=60.53 E-value=28 Score=28.13 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=55.5
Q ss_pred hhhhhhCCCchhHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038129 42 VGNMLQDLPVELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAV 103 (118)
Q Consensus 42 i~k~L~~l~~~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~ 103 (118)
+..-|+.++...|+.-++.||-|+-.|.-|-+|=-+-.|...+.=|++++++|..++.+|..
T Consensus 12 lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 12 LFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456777777899999999999999999999999999999999999999999999999865
No 18
>smart00150 SPEC Spectrin repeats.
Probab=60.33 E-value=37 Score=21.13 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=37.9
Q ss_pred cCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhc
Q 038129 70 QDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHH 114 (118)
Q Consensus 70 ~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~ 114 (118)
.+|+.+....+..+..+...++.++...+..+.......++|...
T Consensus 23 ~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~ 67 (101)
T smart00150 23 SEDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEE 67 (101)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 356678899999999999999999999999999888887777653
No 19
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=59.36 E-value=25 Score=21.73 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVL 104 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~ 104 (118)
..+.+.+++.+++.|++.++++++..
T Consensus 42 ~~~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 42 SRLRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34666778888888888888877653
No 20
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=58.73 E-value=24 Score=23.06 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=26.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 038129 75 GCVRMISLLQQQIHNAESQLVKARAEIAVLGSH 107 (118)
Q Consensus 75 Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~ 107 (118)
|.+.-+......+..+++|+..++.+|..++.|
T Consensus 37 ~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~~ 69 (69)
T PF14197_consen 37 SAERQLGDAYEENNKLKEENEALRKELEELRAQ 69 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 455556677888899999999999998887764
No 21
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=58.30 E-value=23 Score=24.78 Aligned_cols=30 Identities=13% Similarity=0.004 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVLGSHA 108 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~ 108 (118)
.+..+++++..++.|++.++++.+..+.+-
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI 57 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEI 57 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666677766666666665555544433
No 22
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=58.27 E-value=21 Score=26.70 Aligned_cols=61 Identities=18% Similarity=0.122 Sum_probs=45.4
Q ss_pred chhhhhhhCCCchhH------HHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 038129 40 SKVGNMLQDLPVELR------AEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAE 100 (118)
Q Consensus 40 sni~k~L~~l~~~~R------~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~ 100 (118)
+-|++.|++++|..+ .-.+.+-+-|.--=..+-.-|--++|..|..|+.+...||..-+..
T Consensus 49 ~lVi~tlk~~dp~RKCfRmIgGvLVErTVkeVlP~L~~nke~i~~~i~~l~~qL~~k~kElnkfk~~ 115 (140)
T KOG4098|consen 49 KLVIETLKDLDPTRKCFRMIGGVLVERTVKEVLPILQTNKENIEKVIKKLTDQLVQKGKELNKFKKD 115 (140)
T ss_pred HHHHHHHHhcChhhHHHHHhccchhhhhHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567888888988876 3344555555555556666788899999999999999999887653
No 23
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=56.65 E-value=9.8 Score=24.25 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038129 79 MISLLQQQIHNAESQLVKA 97 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~ 97 (118)
.|..++.++.++..++..+
T Consensus 15 ~i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 15 SINTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444
No 24
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=56.03 E-value=18 Score=29.50 Aligned_cols=57 Identities=23% Similarity=0.204 Sum_probs=37.4
Q ss_pred hhhhhhhCCCchhHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038129 41 KVGNMLQDLPVELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLG 105 (118)
Q Consensus 41 ni~k~L~~l~~~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~ 105 (118)
+++.+|+.-+..+..+| ++=+-|.+-.. -.-++.|++|+.++.+.|..++.+|....
T Consensus 52 ~~i~~le~~~~~~l~~a-k~eLqe~eek~-------e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 52 TAIDILEYSNHKQLQQA-KAELQEWEEKE-------ESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HHHHHHHccChHHHHHH-HHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665554444443 33334444432 34689999999999999999998877443
No 25
>PRK11677 hypothetical protein; Provisional
Probab=55.86 E-value=25 Score=25.96 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhcc
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHHV 115 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~~ 115 (118)
-...|+.++++++.||+.-+.++..|=.+.+.|+..+
T Consensus 30 ~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L 66 (134)
T PRK11677 30 QQQALQYELEKNKAELEEYRQELVSHFARSAELLDTM 66 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777777666666666543
No 26
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=55.48 E-value=29 Score=23.95 Aligned_cols=29 Identities=10% Similarity=0.078 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAVLGSHA 108 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~~~~~~ 108 (118)
+..|+.+.++++.|.+.+.+++..|+-.+
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~~vrq 60 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNAKVRQ 60 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666667777777766665543
No 27
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=54.74 E-value=43 Score=20.96 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAVLGSHAQ 109 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~ 109 (118)
+..++.++..++.+++.++.+....+.+-+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554444444333
No 28
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=53.81 E-value=28 Score=25.84 Aligned_cols=70 Identities=14% Similarity=0.280 Sum_probs=51.9
Q ss_pred hhhhhhC--CCchhHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhcc
Q 038129 42 VGNMLQD--LPVELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHHV 115 (118)
Q Consensus 42 i~k~L~~--l~~~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~~ 115 (118)
+..++.+ ++++.-.|++.|| ..-..+-+-|.+.+|..++..+..+++|...++..-.....+...|...+
T Consensus 13 l~~~~e~~~~d~e~~~dtLe~i----~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL 84 (162)
T PF05565_consen 13 LLELLEEGDLDEEAIADTLESI----EDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYL 84 (162)
T ss_pred HHHHHhcCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445544 5566667777773 44556788899999999999999999999999887777777666665443
No 29
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=52.87 E-value=15 Score=24.03 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=25.5
Q ss_pred hcc--chhhhhhhCC--CchhHHHHHHHHHHHHh
Q 038129 37 YGS--SKVGNMLQDL--PVELRAEAADAICIEAE 66 (118)
Q Consensus 37 FG~--sni~k~L~~l--~~~~R~~a~~SL~YEA~ 66 (118)
+|. +.|.++|+.+ |.+.|...+..++.||.
T Consensus 18 pGr~ye~iF~lL~~vqG~~~~r~~fv~~~IkEA~ 51 (65)
T PF15300_consen 18 PGRNYEKIFKLLEQVQGPLEVRKQFVEMIIKEAA 51 (65)
T ss_pred cCCcHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 454 5788999977 68899999999999985
No 30
>PHA02562 46 endonuclease subunit; Provisional
Probab=51.19 E-value=23 Score=30.21 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=10.1
Q ss_pred CCCCCCCCchhHHHHHHHhccc
Q 038129 19 APYFPANDPHRFACVHKIYGSS 40 (118)
Q Consensus 19 aPyFp~~~~~~F~~vhkvFG~s 40 (118)
.|.++.....+-..+.++||.+
T Consensus 142 ~~f~~~~~~er~~il~~l~~~~ 163 (562)
T PHA02562 142 VPFMQLSAPARRKLVEDLLDIS 163 (562)
T ss_pred hhHhcCChHhHHHHHHHHhCCH
Confidence 3444444344444555555544
No 31
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=51.14 E-value=20 Score=30.79 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038129 79 MISLLQQQIHNAESQLVKARAE 100 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~ 100 (118)
.|..||+||.+++.||..++++
T Consensus 43 ~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 43 EISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999988776
No 32
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=50.55 E-value=39 Score=21.13 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVL 104 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~ 104 (118)
-|..|+.++.+++.+...++.++...
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777777777766
No 33
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=49.46 E-value=16 Score=30.25 Aligned_cols=35 Identities=26% Similarity=0.560 Sum_probs=28.2
Q ss_pred CCCCCCCCchhHHHHHHHhccchhhhhhhCCCchhH
Q 038129 19 APYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELR 54 (118)
Q Consensus 19 aPyFp~~~~~~F~~vhkvFG~sni~k~L~~l~~~~R 54 (118)
-||.|.+ +++-..+-+.||.++|-.+...+|.+.|
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 36 (447)
T PRK00451 2 MPYIPHT-EEDIREMLDAIGVKSIDELFADIPEELR 36 (447)
T ss_pred CCCCCCC-HHHHHHHHHHhCCCCHHHHHHhCCHHHH
Confidence 3899997 7888899999999999777776665544
No 34
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=49.32 E-value=38 Score=22.39 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=21.5
Q ss_pred CCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038129 71 DPVYGCVRMISLLQQQIHNAESQLVKARAEIA 102 (118)
Q Consensus 71 DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la 102 (118)
-|+.|. ..+..|..++..++.||+.+++++.
T Consensus 59 ~~l~~i-~~~l~l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 59 VNLAGV-KRILELEEELAELRAELDELRARLR 89 (91)
T ss_pred CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344443 3444588899999999988887764
No 35
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=48.88 E-value=38 Score=21.61 Aligned_cols=29 Identities=10% Similarity=0.275 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 78 RMISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 78 G~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
|.+...+.++......|..++.+|..|..
T Consensus 42 ~~~~~~~~~l~es~~ki~~Lr~~L~k~~~ 70 (72)
T cd00089 42 KLLAEAEQMLRESKQKLELLKMQLEKLKQ 70 (72)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67778888888899999999988888764
No 36
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=48.23 E-value=25 Score=23.26 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 038129 76 CVRMISLLQQQIHNAESQLVKARA 99 (118)
Q Consensus 76 c~G~I~~Lq~ql~~~~~EL~~~~~ 99 (118)
.+++|..|-.++..++.||..+++
T Consensus 61 gi~lil~LLd~i~~L~~el~~L~~ 84 (84)
T PF13591_consen 61 GIALILDLLDRIEQLRRELRELRR 84 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 578899999999999999988763
No 37
>PLN02742 Probable galacturonosyltransferase
Probab=47.93 E-value=1.2e+02 Score=27.45 Aligned_cols=71 Identities=14% Similarity=0.091 Sum_probs=50.8
Q ss_pred HHHHHhccchhhhhh-hCCCchhHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 32 CVHKIYGSSKVGNML-QDLPVELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 32 ~vhkvFG~sni~k~L-~~l~~~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
...++.|.+..-.-+ -.-..+.+-..|+.++++|..-. |+|..++.+|...+..+++|+...+.+-+.+..
T Consensus 111 e~~~~l~~a~~d~~~~~~~~~~~~~~~m~~~i~~ak~~~----~d~~~~~~klr~~l~~~e~~~~~~~~q~~~~~~ 182 (534)
T PLN02742 111 NCQLLLSKAATRGEPITVEEAEPIIRDLAALIYQAQDLH----YDSATTIMTLKAHIQALEERANAATVQSTKFGQ 182 (534)
T ss_pred HHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555442211 11114578889999999987644 559999999999999999999999887776654
No 38
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=47.53 E-value=61 Score=26.36 Aligned_cols=68 Identities=21% Similarity=0.275 Sum_probs=45.5
Q ss_pred HHHHHhcc--chhhhhhhCCC-chhHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHH----HHHHHHh
Q 038129 32 CVHKIYGS--SKVGNMLQDLP-VELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKA----RAEIAVL 104 (118)
Q Consensus 32 ~vhkvFG~--sni~k~L~~l~-~~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~----~~~la~~ 104 (118)
++-++|-. .-+.+||+-.| ..+|+.+|+.|--+-+-|. ..|.+||.++...+.-|..+ +++|+.+
T Consensus 47 ~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD--------~~IQqLqk~LK~aE~iLtta~fqA~qKLksi 118 (272)
T KOG4552|consen 47 NILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRD--------EVIQQLQKNLKSAEVILTTACFQANQKLKSI 118 (272)
T ss_pred HHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445543 33556666666 4568999999865555554 36999999999888777654 6667766
Q ss_pred hch
Q 038129 105 GSH 107 (118)
Q Consensus 105 ~~~ 107 (118)
+..
T Consensus 119 ~~A 121 (272)
T KOG4552|consen 119 KEA 121 (272)
T ss_pred HHH
Confidence 553
No 39
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=46.67 E-value=58 Score=20.79 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAVLG 105 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~~~ 105 (118)
|+.|..++.++..++..++.++..-+
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~~ak 37 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQAAK 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666665554433
No 40
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=46.50 E-value=56 Score=20.26 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhh
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVLGSHAQELRH 113 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~ 113 (118)
.|..|+..+..+..+...++.++..+...-+.|..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677777777777777777777777766665543
No 41
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=46.43 E-value=46 Score=21.84 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAVL 104 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~~ 104 (118)
+-.|.+.|.-+++|++.++++++.-
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK 51 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKK 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677777777777777777643
No 42
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=46.08 E-value=43 Score=22.09 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=20.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 038129 75 GCVRMISLLQQQIHNAESQLVKARAEIAVLGSH 107 (118)
Q Consensus 75 Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~ 107 (118)
..+..|..|+..+..++.+-..+..+....+..
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~e 47 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKEENEELKEE 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 356677788888888877644444444433333
No 43
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=45.31 E-value=43 Score=26.47 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Q 038129 77 VRMISLLQQQIHNAESQLVKARAEIAVLGSHAQEL 111 (118)
Q Consensus 77 ~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~ 111 (118)
.|-|+-|++|+..+++|++.=-++|...|.|-...
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~ 43 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQLREL 43 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 58999999999999999988777777777654433
No 44
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=44.98 E-value=56 Score=22.59 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhc
Q 038129 77 VRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHH 114 (118)
Q Consensus 77 ~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~ 114 (118)
-.-|..|+.++..+..|+..++.+|..-+.--++|+.-
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~l 85 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDTEREEKQELLKL 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999999999999999999888887653
No 45
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=44.56 E-value=49 Score=25.16 Aligned_cols=50 Identities=30% Similarity=0.348 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhh
Q 038129 56 EAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELR 112 (118)
Q Consensus 56 ~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~ 112 (118)
.++++-+-++--+..||. ..|.+.|..++.+|..++..++........+-
T Consensus 8 ~~~~a~~~~~ld~~EDP~-------~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le 57 (221)
T PF04012_consen 8 TLVKANINELLDKAEDPE-------KMLEQAIRDMEEQLRKARQALARVMANQKRLE 57 (221)
T ss_pred HHHHHHHHHHHHhhcCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777876 56677777777777777777776665554443
No 46
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=44.56 E-value=7.4 Score=27.09 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=15.5
Q ss_pred HHHHhhhccCCCcCcHHHH
Q 038129 62 CIEAECRVQDPVYGCVRMI 80 (118)
Q Consensus 62 ~YEA~~R~~DPV~Gc~G~I 80 (118)
-.|-..|..|||-|++--.
T Consensus 58 ~~~~~~W~pDPvTGyyrPe 76 (93)
T PF03242_consen 58 SKEKSSWMPDPVTGYYRPE 76 (93)
T ss_pred cccccccccCCCCccccCC
Confidence 5677899999999997543
No 47
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=44.39 E-value=40 Score=25.12 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHhhhccCC--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Q 038129 52 ELRAEAADAICIEAECRVQDP--VYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQE 110 (118)
Q Consensus 52 ~~R~~a~~SL~YEA~~R~~DP--V~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~ 110 (118)
.+|..+.+-==|-+++|++-= =.+-=.-=..|++|+.+++.|++.++.++..|+.-=..
T Consensus 53 KQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 53 KQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEA 113 (135)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666667778888875410 00000112357778888888888888888877764333
No 48
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=43.96 E-value=32 Score=23.95 Aligned_cols=34 Identities=15% Similarity=0.065 Sum_probs=25.0
Q ss_pred CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 73 VYGCVRMISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 73 V~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
|-|-.|.+|...+.|..+.++.....+.++....
T Consensus 13 vl~L~~~l~~qs~~i~~L~a~n~~q~~tI~qq~~ 46 (110)
T PF10828_consen 13 VLGLGGWLWYQSQRIDRLRAENKAQAQTIQQQED 46 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788898889999998888766666554443
No 49
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=43.61 E-value=55 Score=22.98 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhcc
Q 038129 81 SLLQQQIHNAESQLVKARAEIAVLGSHAQELRHHV 115 (118)
Q Consensus 81 ~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~~ 115 (118)
..|..|++-++.|.+.++..|+..-.+..++.+-+
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL 38 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEEL 38 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888888888888887777643
No 50
>smart00338 BRLZ basic region leucin zipper.
Probab=43.03 E-value=81 Score=19.54 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVLGSHAQ 109 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~ 109 (118)
.|..|+.++..++.+...++.++...+.+.+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~ 57 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELE 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544444444444333
No 51
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=42.60 E-value=76 Score=19.31 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVLGSHA 108 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~ 108 (118)
-++.|..|+.++.+-|+.+.++|...-.|.
T Consensus 3 q~s~L~~qL~qL~aNL~~t~~~l~~~s~Q~ 32 (45)
T PF08227_consen 3 QYSHLASQLAQLQANLADTENLLEMTSIQA 32 (45)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 467899999999999999999988776665
No 52
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=42.55 E-value=1.1e+02 Score=22.35 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVLGSHAQ 109 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~ 109 (118)
-|-.+..+|...+.|....+..++.++.+.|
T Consensus 84 Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q 114 (120)
T KOG3478|consen 84 EIKRLENQIRDSQEEFEKQREAVIKLQQAAQ 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5778888999999999999998888876544
No 53
>PRK09039 hypothetical protein; Validated
Probab=41.88 E-value=32 Score=28.65 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Q 038129 77 VRMISLLQQQIHNAESQLVKARAEIAVLGSHAQE 110 (118)
Q Consensus 77 ~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~ 110 (118)
...|..|++||..++.+|+.++.+|.....+...
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~ 169 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASEKRDRE 169 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777666554433
No 54
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=41.74 E-value=46 Score=24.71 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhh
Q 038129 76 CVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRH 113 (118)
Q Consensus 76 c~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~ 113 (118)
=+.--.+|+++++++++||+..++++...+..-.....
T Consensus 64 eFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~ 101 (161)
T PF04420_consen 64 EFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLS 101 (161)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666779999999999999999999888776554443
No 55
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=41.52 E-value=64 Score=22.71 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhcccC
Q 038129 78 RMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHHVQD 117 (118)
Q Consensus 78 G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~~~~ 117 (118)
..|..|+.++..++..=..+..+|.....|+..|-..+..
T Consensus 57 ~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~ 96 (116)
T PF05064_consen 57 EKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDP 96 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888889999999999888766543
No 56
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=41.10 E-value=69 Score=20.55 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038129 81 SLLQQQIHNAESQLVKARAEIAV 103 (118)
Q Consensus 81 ~~Lq~ql~~~~~EL~~~~~~la~ 103 (118)
..++.++.+++.|-..++.++..
T Consensus 34 ~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 34 QKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 57
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=40.78 E-value=50 Score=23.31 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhcc
Q 038129 83 LQQQIHNAESQLVKARAEIAVLGSHAQELRHHV 115 (118)
Q Consensus 83 Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~~ 115 (118)
|..++..++.++..+-.+-+..+.-.+.|++++
T Consensus 20 l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l 52 (107)
T PF06156_consen 20 LLEELEELKKQLQELLEENARLRIENEHLRERL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444455555555443
No 58
>PRK10884 SH3 domain-containing protein; Provisional
Probab=40.44 E-value=54 Score=25.64 Aligned_cols=34 Identities=15% Similarity=0.265 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhh
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVLGSHAQELR 112 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~ 112 (118)
.|..|+.+..+++.||..+++++...+.+.+.+-
T Consensus 133 ~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 133 VINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666888888888888888888877666555443
No 59
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=40.33 E-value=68 Score=20.44 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 038129 82 LLQQQIHNAESQLVKARAEIAVLGSHAQ 109 (118)
Q Consensus 82 ~Lq~ql~~~~~EL~~~~~~la~~~~~~~ 109 (118)
.+++.+..++.+|..+.+++...+.+.+
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666666666666665555443
No 60
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=40.30 E-value=61 Score=22.12 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038129 77 VRMISLLQQQIHNAESQLVKARA 99 (118)
Q Consensus 77 ~G~I~~Lq~ql~~~~~EL~~~~~ 99 (118)
+-.|.-||-.|..++.+-..+..
T Consensus 17 vdtI~LLqmEieELKekn~~L~~ 39 (79)
T PRK15422 17 IDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554444433
No 61
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=39.30 E-value=39 Score=24.22 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhch
Q 038129 85 QQIHNAESQLVKARAEIAVLGSH 107 (118)
Q Consensus 85 ~ql~~~~~EL~~~~~~la~~~~~ 107 (118)
.+..+++.||..++.+|..||..
T Consensus 25 ~~q~~l~~eL~~~k~el~~yk~~ 47 (128)
T PF06295_consen 25 QKQAKLEQELEQAKQELEQYKQE 47 (128)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999865
No 62
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=38.47 E-value=67 Score=21.54 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 038129 76 CVRMISLLQQQIHNAESQLVKARAEIAVLGSH 107 (118)
Q Consensus 76 c~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~ 107 (118)
-...+..|..++..++.++..++.++...+.+
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 99 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQALEAQ 99 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34477788888888888888888887776654
No 63
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=38.36 E-value=67 Score=17.30 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 038129 83 LQQQIHNAESQLVKARAEIAVL 104 (118)
Q Consensus 83 Lq~ql~~~~~EL~~~~~~la~~ 104 (118)
.+..+.+-++||+.++..++.+
T Consensus 3 Yqakla~YqaeLa~vqk~na~~ 24 (25)
T PF06696_consen 3 YQAKLAQYQAELARVQKANADY 24 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 4566778888999988887754
No 64
>PRK14127 cell division protein GpsB; Provisional
Probab=37.79 E-value=86 Score=22.37 Aligned_cols=48 Identities=19% Similarity=0.127 Sum_probs=22.7
Q ss_pred hCCCchhHHHHHHHHH--HHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038129 47 QDLPVELRAEAADAIC--IEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVL 104 (118)
Q Consensus 47 ~~l~~~~R~~a~~SL~--YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~ 104 (118)
+.-++++=++.+..++ ||+- ...+..|+.++..++.+|...+.++..+
T Consensus 21 RGYd~~EVD~FLd~V~~dye~l----------~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 21 RGYDQDEVDKFLDDVIKDYEAF----------QKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4555555555555543 2221 2234445555555555555554444444
No 65
>COG0339 Dcp Zn-dependent oligopeptidases [Amino acid transport and metabolism]
Probab=36.67 E-value=17 Score=33.51 Aligned_cols=28 Identities=29% Similarity=0.579 Sum_probs=23.0
Q ss_pred CccCCCCCCCC--chhHHHHHHHhccchhh
Q 038129 16 CIFAPYFPAND--PHRFACVHKIYGSSKVG 43 (118)
Q Consensus 16 C~laPyFp~~~--~~~F~~vhkvFG~sni~ 43 (118)
=-+.||||-++ .--|..++++||..=+-
T Consensus 355 ~elrpYF~l~~Vl~GlF~~~~rLfGI~~~e 384 (683)
T COG0339 355 EELRPYFPLNKVLEGLFEVAKRLFGITFVE 384 (683)
T ss_pred HHhhhcCChhHHHHHHHHHHHHHcCeEEEE
Confidence 45889999887 68899999999985443
No 66
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=35.94 E-value=59 Score=24.34 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhh
Q 038129 78 RMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRH 113 (118)
Q Consensus 78 G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~ 113 (118)
+....+..++.+++.||+..+.++...+.|..++..
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567788888888888888888888888877653
No 67
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=35.79 E-value=79 Score=21.81 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038129 76 CVRMISLLQQQIHNAESQLVKARAEIAV 103 (118)
Q Consensus 76 c~G~I~~Lq~ql~~~~~EL~~~~~~la~ 103 (118)
|...+..+..++....++|..++++|..
T Consensus 78 ~~~~~~~~~~~l~~~~~~L~~l~~~L~~ 105 (107)
T cd01111 78 PEACLAQLRQKIEVRRAALNALTTQLAE 105 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888888888888765
No 68
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=35.24 E-value=46 Score=22.44 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=15.5
Q ss_pred CCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038129 72 PVYGCVRMISLLQQQIHNAESQLVKARAEIAVLG 105 (118)
Q Consensus 72 PV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~ 105 (118)
||.|.+-+.-+++.+...---+-+.++.+|+...
T Consensus 8 Pvrgv~wv~e~I~~~Ae~E~~Dp~~i~~~L~~L~ 41 (79)
T PF05120_consen 8 PVRGVVWVAEQIQEQAERELYDPAAIRRELAELQ 41 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 4444444444444444332223455666665443
No 69
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=35.13 E-value=83 Score=25.69 Aligned_cols=71 Identities=14% Similarity=0.130 Sum_probs=46.7
Q ss_pred chhhhhh-hCCCchhHHHHHHHHHHHHhhhccCC-CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Q 038129 40 SKVGNML-QDLPVELRAEAADAICIEAECRVQDP-VYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQE 110 (118)
Q Consensus 40 sni~k~L-~~l~~~~R~~a~~SL~YEA~~R~~DP-V~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~ 110 (118)
++|+.+= +.-+|+.=...+++++-+++....+= -.-.-..+..++.|+..++.+|..++.+|..|+..+.-
T Consensus 130 s~ii~I~~~~~dP~~A~~ian~l~~~~~~~i~~~~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~ 202 (362)
T TIGR01010 130 SGILTLNVTAFDAEEAQKINQRLLKEGERLINRLNERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKV 202 (362)
T ss_pred CCeEEEEEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4444432 24456666777788754444433220 00124567789999999999999999999999987654
No 70
>PF14282 FlxA: FlxA-like protein
Probab=34.24 E-value=82 Score=21.87 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038129 81 SLLQQQIHNAESQLVKARAEIA 102 (118)
Q Consensus 81 ~~Lq~ql~~~~~EL~~~~~~la 102 (118)
..|+.||..++++|..++.+.+
T Consensus 54 q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 54 QLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444443
No 71
>PTZ00464 SNF-7-like protein; Provisional
Probab=34.11 E-value=1.7e+02 Score=22.96 Aligned_cols=27 Identities=15% Similarity=0.307 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038129 78 RMISLLQQQIHNAESQLVKARAEIAVL 104 (118)
Q Consensus 78 G~I~~Lq~ql~~~~~EL~~~~~~la~~ 104 (118)
..+..|+.+|..+..|+..++..+..-
T Consensus 25 ~r~~~l~kKi~~ld~E~~~ak~~~k~~ 51 (211)
T PTZ00464 25 GRSEVVDARINKIDAELMKLKEQIQRT 51 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777777777777666544
No 72
>PF11413 HIF-1: Hypoxia-inducible factor-1; InterPro: IPR021537 Hypoxia-inducible factors (HIFs) are transcription factors that respond to changes in available oxygen in the cellular environment. Specifically, they respond to decreases in oxygen, mediating the effects of hypoxia []. HIFs are heterodimers, composed of an alpha and a beta subunit. At least 3 different alpha subunits are known to exist, termed HIF-1, -2 and -3 alpha. Beta subunits, meanwhile, are constitutively-expressed aryl hydrocarbon receptor nuclear translocators (ARNTs). In addition to their role in hypoxia, HIFs have been shown to be involved in a range of processes, including angiogenesis, metal transport, mitochondrial function and cell growth []. This entry represents HIF alpha subunits.; PDB: 3HQU_S 1LQB_D 1LM8_H 3HQR_S.
Probab=33.18 E-value=11 Score=21.85 Aligned_cols=13 Identities=38% Similarity=1.007 Sum_probs=7.0
Q ss_pred ccCCCCCCCCchhHH
Q 038129 17 IFAPYFPANDPHRFA 31 (118)
Q Consensus 17 ~laPyFp~~~~~~F~ 31 (118)
++|||.|-| .+|+
T Consensus 13 mLAPYIpMd--dDFq 25 (34)
T PF11413_consen 13 MLAPYIPMD--DDFQ 25 (34)
T ss_dssp GTSBB--SS----EE
T ss_pred HhcCccccC--ccce
Confidence 689999987 4554
No 73
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=33.18 E-value=54 Score=27.71 Aligned_cols=76 Identities=9% Similarity=0.078 Sum_probs=46.2
Q ss_pred hccchhhhhhhCCCchhHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhchhhhhhh
Q 038129 37 YGSSKVGNMLQDLPVELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKAR-AEIAVLGSHAQELRH 113 (118)
Q Consensus 37 FG~sni~k~L~~l~~~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~-~~la~~~~~~~~~~~ 113 (118)
+|..-++-+-.++..++..+-++.+.-.=--+..||+.|..-+- .++.++.+.++|-.+-. ..+-..|-++++..|
T Consensus 3 wg~~~vl~i~dev~~qe~~~~~~~~~~D~arg~~ds~~gi~~v~-iree~akq~~ee~~~r~~~~vL~~rrp~~~~~k 79 (360)
T KOG3966|consen 3 WGMTLVLHIDDEVNRQEHMVKFQIIARDFARGFIDSFKGITFVR-IREEEAKQVKEEPPKRVERTVLMMRRPKQGIFK 79 (360)
T ss_pred cceeEEEEeecccchHHHHHHHHHHHHHHhhcCCccccchhhhh-hhHHHHHHhhhcCCchHHHHHHhhcCccccccc
Confidence 34444444445555555555566666665667889999987554 88899998887754433 333333444444443
No 74
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=32.82 E-value=72 Score=21.54 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAVL 104 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~~ 104 (118)
|..|+.+..+++.||.++.++|..-
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~ 26 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQN 26 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777788888888777777653
No 75
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=32.70 E-value=64 Score=25.28 Aligned_cols=31 Identities=10% Similarity=0.248 Sum_probs=20.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 76 CVRMISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 76 c~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
-+.-+..++++|.+++.||+.++.++..+..
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777766666665544
No 76
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=32.69 E-value=1.1e+02 Score=19.67 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 82 LLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 82 ~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
..-++-+.+++.+-.++.+|+.|+.
T Consensus 7 ~VL~ERNeLK~~v~~leEEL~~yk~ 31 (60)
T PF11461_consen 7 EVLQERNELKARVFLLEEELAYYKS 31 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445667788888888888888886
No 77
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=32.37 E-value=1.3e+02 Score=18.63 Aligned_cols=58 Identities=10% Similarity=0.100 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhhc-cCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhh
Q 038129 56 EAADAICIEAECRV-QDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRH 113 (118)
Q Consensus 56 ~a~~SL~YEA~~R~-~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~ 113 (118)
+.+.+-+-++...+ ..++.+-...+..+..+...++.++...+..+.......+.|..
T Consensus 11 ~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~ 69 (105)
T PF00435_consen 11 DELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLID 69 (105)
T ss_dssp HHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666665 44458889999999999999999999999999998888777743
No 78
>PRK11677 hypothetical protein; Provisional
Probab=32.01 E-value=60 Score=23.94 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhch
Q 038129 85 QQIHNAESQLVKARAEIAVLGSH 107 (118)
Q Consensus 85 ~ql~~~~~EL~~~~~~la~~~~~ 107 (118)
.+...++.||..++.+|..|+.+
T Consensus 29 ~~q~~le~eLe~~k~ele~Ykqe 51 (134)
T PRK11677 29 RQQQALQYELEKNKAELEEYRQE 51 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999864
No 79
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.48 E-value=76 Score=25.85 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=32.2
Q ss_pred HHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038129 63 IEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLG 105 (118)
Q Consensus 63 YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~ 105 (118)
+|-..|.+|+ --.-.+..+|.+..++++|+..+.+.+..++
T Consensus 44 ~~~~~~~r~~--~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 44 GESVRRARDL--DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred Ccchhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444554 4567788999999999999999999999998
No 80
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=31.28 E-value=1.2e+02 Score=22.30 Aligned_cols=33 Identities=15% Similarity=0.352 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhh
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAVLGSHAQELR 112 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~ 112 (118)
+..|+.++..-..|+..++.+|.........|-
T Consensus 96 ~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Le 128 (131)
T PF04859_consen 96 VKKLEAELRAKDSEIDRLREKLDELNRANKSLE 128 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667888888888888889988888777666554
No 81
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=31.15 E-value=77 Score=22.76 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHhhc
Q 038129 82 LLQQQIHNAESQLVKAR--------AEIAVLGS 106 (118)
Q Consensus 82 ~Lq~ql~~~~~EL~~~~--------~~la~~~~ 106 (118)
++...|..++.||.+++ .+|..|+.
T Consensus 4 QmElrIkdLeselsk~Ktsq~d~~~~eLEkYkq 36 (111)
T PF12001_consen 4 QMELRIKDLESELSKMKTSQEDSNKTELEKYKQ 36 (111)
T ss_pred HHHHHHHHHHHHHHHhHhHhhhhhHHHHHHHHH
Confidence 45566777777777766 67777765
No 82
>PF06152 Phage_min_cap2: Phage minor capsid protein 2; InterPro: IPR009319 This entry is represented by Bacteriophage A118, Gp4, the minor capsid protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=31.08 E-value=1.6e+02 Score=24.69 Aligned_cols=73 Identities=19% Similarity=0.307 Sum_probs=41.2
Q ss_pred CCCCC--ccCCCCCCCCchhHHHHHHHhccchhhhhhhCCCchhHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHH
Q 038129 12 CPSDC--IFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHN 89 (118)
Q Consensus 12 C~~~C--~laPyFp~~~~~~F~~vhkvFG~sni~k~L~~l~~~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~ 89 (118)
|-++| .+.||||.... .-+...+++ ++.+ .|||..+.| .++.+|..
T Consensus 276 ~g~NCrH~~~p~~~Gi~~----------------~~~~~~d~~---~~~~--~y~~~Q~QR-----------~~ER~IR~ 323 (361)
T PF06152_consen 276 FGPNCRHSLYPFIPGIST----------------EEQPKYDPE---ENYE--NYEATQKQR-----------YLERQIRK 323 (361)
T ss_pred cccCCCCcccCCCCCCCC----------------CccCcCChh---hhhh--hhhhhHHHH-----------HHHHHHHH
Confidence 44565 58899997654 112222222 2222 477777764 47777777
Q ss_pred HHHHHHHHH---------HHHHHhhchhhhhhhccc
Q 038129 90 AESQLVKAR---------AEIAVLGSHAQELRHHVQ 116 (118)
Q Consensus 90 ~~~EL~~~~---------~~la~~~~~~~~~~~~~~ 116 (118)
.+.+|..++ ..=+..|.++..++..+.
T Consensus 324 ~Kr~~~~~~~~~d~~~~~~~~~~~r~~q~~~r~~~~ 359 (361)
T PF06152_consen 324 WKRRLAAAEALGDDENIQKAKAKVRQQQAKYRDFIK 359 (361)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777665443 233455666666666553
No 83
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=30.94 E-value=1.5e+02 Score=20.33 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 78 RMISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 78 G~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
+++..+.|++.+++.|.+.++++.+..+.
T Consensus 16 ~i~~y~~~k~~ka~~~~~kL~~en~qlk~ 44 (87)
T PF10883_consen 16 LILAYLWWKVKKAKKQNAKLQKENEQLKT 44 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678888888887777666554443
No 84
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=30.52 E-value=21 Score=22.31 Aligned_cols=15 Identities=47% Similarity=1.245 Sum_probs=13.2
Q ss_pred CchhchHhhhCCCCC
Q 038129 1 RCAACRHLRRRCPSD 15 (118)
Q Consensus 1 ~CaaCk~~Rr~C~~~ 15 (118)
.|..||-++++|..|
T Consensus 22 ~C~~Cr~~~~rC~Rd 36 (52)
T PF04706_consen 22 KCLPCRKRRKRCTRD 36 (52)
T ss_pred cChhhccCCCCCCCC
Confidence 388999999999976
No 85
>PF15483 DUF4641: Domain of unknown function (DUF4641)
Probab=30.52 E-value=61 Score=28.52 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=25.3
Q ss_pred CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038129 73 VYGCVRMISLLQQQIHNAESQLVKARAEIAVLG 105 (118)
Q Consensus 73 V~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~ 105 (118)
+-||-.-+ .||.+|+.|+++|+.++.....++
T Consensus 414 ~qGCpRC~-~LQkEIedLreQLaamqsl~~kfq 445 (445)
T PF15483_consen 414 AQGCPRCL-VLQKEIEDLREQLAAMQSLADKFQ 445 (445)
T ss_pred CCCCcccH-HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34666665 489999999999999998877664
No 86
>PF11387 DUF2795: Protein of unknown function (DUF2795); InterPro: IPR021527 This family of proteins has no known function.
Probab=30.50 E-value=40 Score=19.98 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=20.0
Q ss_pred CCCCCchhHHHHHHHhccchhhhhhhCCCch
Q 038129 22 FPANDPHRFACVHKIYGSSKVGNMLQDLPVE 52 (118)
Q Consensus 22 Fp~~~~~~F~~vhkvFG~sni~k~L~~l~~~ 52 (118)
||+++.+--..+.+-=....|+..|+.||..
T Consensus 6 yPa~k~~Lv~~A~~~gA~~~vl~~L~~lP~~ 36 (44)
T PF11387_consen 6 YPADKDELVRHARRNGAPDDVLDALERLPDR 36 (44)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHCCcc
Confidence 7888744444444443346789999999854
No 87
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=30.02 E-value=1.3e+02 Score=23.72 Aligned_cols=39 Identities=13% Similarity=0.165 Sum_probs=23.2
Q ss_pred hhhccCCCcCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038129 66 ECRVQDPVYGCVR---MISLLQQQIHNAESQLVKARAEIAVL 104 (118)
Q Consensus 66 ~~R~~DPV~Gc~G---~I~~Lq~ql~~~~~EL~~~~~~la~~ 104 (118)
-.+..+.+.+... -+..+..+...+++|++.++.+++.+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 54 VNAPREFVSGVFESLASLFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444333 45566777777888877777776644
No 88
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=30.02 E-value=1.3e+02 Score=21.64 Aligned_cols=37 Identities=14% Similarity=0.265 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhcc
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHHV 115 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~~ 115 (118)
.+..+...+..++..-..+..+|..++..+..|.|++
T Consensus 52 ~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~ 88 (141)
T PF13874_consen 52 RLKEINDKLEELQKHDLETSARLEEARRRHQELSHRL 88 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666667788888888888888865
No 89
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.62 E-value=50 Score=27.01 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhh
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVLGSHAQELR 112 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~ 112 (118)
.|-.|+.||.+++-+++.++. +...+.|.++.+
T Consensus 57 ~~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~ 89 (262)
T COG1729 57 RLTQLEQQLRQLQGKIEELRG-IQELQYQNNQNV 89 (262)
T ss_pred ccHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHH
Confidence 477889999999999998887 666666664443
No 90
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=29.54 E-value=96 Score=22.02 Aligned_cols=36 Identities=28% Similarity=0.319 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhccc
Q 038129 81 SLLQQQIHNAESQLVKARAEIAVLGSHAQELRHHVQ 116 (118)
Q Consensus 81 ~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~~~ 116 (118)
..|..+|...+.+|..+..++.+..-..++|..+|.
T Consensus 29 ~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~ 64 (102)
T PF10205_consen 29 AELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVE 64 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888889999999999988888888887764
No 91
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=29.31 E-value=1.5e+02 Score=19.72 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 77 VRMISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 77 ~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
-|+++.||++-..+.-|.-.++++|...+.
T Consensus 7 P~lL~~lQnEWDa~mLE~f~LRk~l~~~rq 36 (70)
T PF08606_consen 7 PSLLSTLQNEWDALMLENFTLRKQLDQTRQ 36 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777887777777777777776666553
No 92
>PF07701 HNOBA: Heme NO binding associated; InterPro: IPR011645 The HNOBA (Haem NO Binding) domain is found associated with the HNOB domain and IPR001054 from INTERPRO in soluble cyclases and signalling proteins. The HNOB domain is predicted to function as a haem-dependent sensor for gaseous ligands, and transduce diverse downstream signals in both bacteria and animals.; GO: 0004383 guanylate cyclase activity, 0006182 cGMP biosynthetic process; PDB: 2P04_B 2P08_A 3HLS_E.
Probab=29.17 E-value=1e+02 Score=24.09 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=29.4
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhhchhhhhhhcc
Q 038129 82 LLQQQIH-NAESQLVKARAEIAVLGSHAQELRHHV 115 (118)
Q Consensus 82 ~Lq~ql~-~~~~EL~~~~~~la~~~~~~~~~~~~~ 115 (118)
.|..+++ +..++|.....+|..-+...++|+|++
T Consensus 176 ~l~~~le~~~~~~Le~~~~~l~~ek~ktd~LL~~m 210 (219)
T PF07701_consen 176 KLAKQLEQEKSAELEESMRELEEEKKKTDELLYSM 210 (219)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666777 888999999999999999999999875
No 93
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.15 E-value=1.4e+02 Score=22.37 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhh
Q 038129 81 SLLQQQIHNAESQLVKARAEIAVLGSHAQELR 112 (118)
Q Consensus 81 ~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~ 112 (118)
..+|.+++.++.+|..-+.||..+=...+.|+
T Consensus 37 ~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLl 68 (138)
T COG3105 37 QKLQYELEKVKAQLDEYRQELVKHFARSAELL 68 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777777766666665554
No 94
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=29.07 E-value=69 Score=22.33 Aligned_cols=28 Identities=14% Similarity=0.130 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhhc
Q 038129 87 IHNAESQLVKARAEIAVLGSHAQELRHH 114 (118)
Q Consensus 87 l~~~~~EL~~~~~~la~~~~~~~~~~~~ 114 (118)
+.+++.|++.++++++..+...+.|...
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~e 56 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAE 56 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555544444443
No 95
>PF04699 P16-Arc: ARP2/3 complex 16 kDa subunit (p16-Arc); InterPro: IPR006789 The Arp2/3 protein complex has been implicated in the control of actin polymerisation. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. The precise function of p16-Arc is currently unknown. Its structure consists of a single domain containing a bundle of seven alpha helices [, ].; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_G 1TYQ_G 1U2V_G 2P9U_G 2P9L_G 1K8K_G 3DXM_G 2P9N_G 3DXK_G 2P9I_G ....
Probab=29.07 E-value=88 Score=23.46 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=30.0
Q ss_pred CCCCCCCC--chhHHHHHHHhc---cchhhhhhhCCCchhHHHHHHHHHH
Q 038129 19 APYFPAND--PHRFACVHKIYG---SSKVGNMLQDLPVELRAEAADAICI 63 (118)
Q Consensus 19 aPyFp~~~--~~~F~~vhkvFG---~sni~k~L~~l~~~~R~~a~~SL~Y 63 (118)
+||-..+. ...+..|++|+. .+.|.++++.|++++.+-.|+-|+.
T Consensus 63 pP~~~k~~~K~~~~~~Vl~vL~s~k~sdI~~~v~~L~~~~~D~LMKYiYk 112 (152)
T PF04699_consen 63 PPYGSKDAVKDRALQLVLEVLTSIKSSDIENAVKSLDSDQQDILMKYIYK 112 (152)
T ss_dssp --TT-S-HHHHHHHHHHHHHHHCS-GGGHHHHHCCS-HHHHHHHHHHHHH
T ss_pred CCcCCCcchHHHHHHHHHHHHHHccHHHHHHHHHhCCHHHHhHHHHHHHH
Confidence 46666552 235556776654 4789999999999999999998764
No 96
>PF08148 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 This C-terminal domain is found in DOB1/SK12/helY-like DEAD box helicases [].; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; PDB: 4A4Z_A 2XGJ_B 3L9O_A.
Probab=28.78 E-value=1.2e+02 Score=22.55 Aligned_cols=57 Identities=16% Similarity=0.152 Sum_probs=31.4
Q ss_pred hhhhCCCchhHHHHHHHHHHHHhhhccCCCcCcHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 038129 44 NMLQDLPVELRAEAADAICIEAECRVQDPVYGCVR-MISLLQQQIHNAESQLVKARAEI 101 (118)
Q Consensus 44 k~L~~l~~~~R~~a~~SL~YEA~~R~~DPV~Gc~G-~I~~Lq~ql~~~~~EL~~~~~~l 101 (118)
+.+.+++|.+=..++.+++||.........+ ..+ .+.....++.....+|..++.+.
T Consensus 32 g~f~~L~p~elAa~lS~~v~e~~~~~~~~~~-~~~~~l~~~~~~l~~~~~~l~~~~~~~ 89 (180)
T PF08148_consen 32 GVFDDLDPAELAALLSCFVYEPRREDEEERY-PPSPRLREALEQLQEIAERLAKVEREH 89 (180)
T ss_dssp TCCCCS-HHHHHHHHHHHC-----SS----------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHhhcccccCcccccc-cccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567899999999999999999887764311 111 55556666666666666665543
No 97
>PRK11239 hypothetical protein; Provisional
Probab=28.72 E-value=95 Score=24.85 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 038129 77 VRMISLLQQQIHNAESQLVKARAEIAVLGSH 107 (118)
Q Consensus 77 ~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~ 107 (118)
.+.+..|...+..+++|++.++++++....|
T Consensus 182 ~~~~~~Le~rv~~Le~eva~L~~~l~~l~~~ 212 (215)
T PRK11239 182 NAVDGDLQARVEALEIEVAELKQRLDSLLAH 212 (215)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456779999999999999999998887653
No 98
>TIGR02780 TrbJ_Ti P-type conjugative transfer protein TrbJ. The TrbJ protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbJ is a homolog of the F-type TraE protein (which is believed to be an inner membrane pore-forming protein, TIGR02761) as well as the vir system VirB5 protein.
Probab=28.70 E-value=1.3e+02 Score=23.81 Aligned_cols=41 Identities=7% Similarity=0.208 Sum_probs=26.3
Q ss_pred CCCcCcHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhchhhhh
Q 038129 71 DPVYGCVRMISLLQ---QQIHNAESQLVKARAEIAVLGSHAQEL 111 (118)
Q Consensus 71 DPV~Gc~G~I~~Lq---~ql~~~~~EL~~~~~~la~~~~~~~~~ 111 (118)
=||+-|...+..+. +.+.+...++..+++++..|..+-+++
T Consensus 26 i~V~D~an~~q~i~~aa~~~~q~~~Qi~qlqnQiq~y~nql~n~ 69 (246)
T TIGR02780 26 VTCINCANFSQQILTAAESVEQLNNQIQQLQNQIQRYENQLKNT 69 (246)
T ss_pred ceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37777777666554 445555566666777777777766654
No 99
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=28.65 E-value=1.1e+02 Score=19.48 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhh
Q 038129 85 QQIHNAESQLVKARAEIAVLGSHAQEL 111 (118)
Q Consensus 85 ~ql~~~~~EL~~~~~~la~~~~~~~~~ 111 (118)
.++.++..++..++.++...+....+|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L 50 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDL 50 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 100
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=28.42 E-value=75 Score=25.37 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhhchhhhhhhccc
Q 038129 89 NAESQLVKARAEIAVLGSHAQELRHHVQ 116 (118)
Q Consensus 89 ~~~~EL~~~~~~la~~~~~~~~~~~~~~ 116 (118)
+++.+|..++.++...|++-.++.|.++
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~ 85 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLN 85 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5566666666666666666666666554
No 101
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=28.40 E-value=1.2e+02 Score=21.14 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAVLG 105 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~~~ 105 (118)
|..|..++.+++.|++.++..++.++
T Consensus 80 i~~L~~el~~L~~E~diLKKa~~~~~ 105 (121)
T PRK09413 80 IKELQRLLGKKTMENELLKEAVEYGR 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566666666666666665555444
No 102
>PF14653 IGFL: Insulin growth factor-like family
Probab=28.24 E-value=31 Score=24.01 Aligned_cols=16 Identities=38% Similarity=0.982 Sum_probs=13.6
Q ss_pred hhCCCCCCccCCCCCC
Q 038129 9 RRRCPSDCIFAPYFPA 24 (118)
Q Consensus 9 Rr~C~~~C~laPyFp~ 24 (118)
-++|.++|.|.|.|.-
T Consensus 42 T~~Cg~~Ctf~pcfe~ 57 (89)
T PF14653_consen 42 TRKCGPNCTFWPCFEK 57 (89)
T ss_pred ccccCCCCCccCcccc
Confidence 3789999999999963
No 103
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=28.22 E-value=1.1e+02 Score=27.22 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=22.3
Q ss_pred cCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038129 70 QDPVYGCVRMISLLQQQIHNAESQLVKARAEIA 102 (118)
Q Consensus 70 ~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la 102 (118)
-.|.....--+..+| ||++|+.||+.+++|+.
T Consensus 17 s~~~~a~~~~~~~~q-kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 17 SLPAAAMADDIDLLQ-KIEALKKQLEELKAQQD 48 (489)
T ss_pred ccchhhhhhhhHHHH-HHHHHHHHHHHHHHhhc
Confidence 344444555555566 88888888888888876
No 104
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=28.21 E-value=1.6e+02 Score=18.53 Aligned_cols=31 Identities=16% Similarity=0.302 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVLGSHAQ 109 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~ 109 (118)
+....+.++......|..++.+|..++....
T Consensus 34 ~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~~ 64 (70)
T PF02185_consen 34 VLSEAESQLRESNQKIELLREQLEKLQQRSQ 64 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 5666777777777777777777777766543
No 105
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=28.14 E-value=1.1e+02 Score=21.78 Aligned_cols=19 Identities=16% Similarity=0.073 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038129 81 SLLQQQIHNAESQLVKARA 99 (118)
Q Consensus 81 ~~Lq~ql~~~~~EL~~~~~ 99 (118)
..|.+++..+-.++..+++
T Consensus 11 ~~le~~l~~l~~el~~LK~ 29 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKK 29 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444333333333
No 106
>PRK15396 murein lipoprotein; Provisional
Probab=28.13 E-value=1e+02 Score=20.78 Aligned_cols=28 Identities=11% Similarity=0.266 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
-+.+|+.++..+..+...+.+.....+.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~ 53 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRS 53 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666655555544
No 107
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=28.12 E-value=3.3e+02 Score=22.08 Aligned_cols=72 Identities=19% Similarity=0.275 Sum_probs=46.1
Q ss_pred HHHHHhccchhhhhhhCCCchhHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 038129 32 CVHKIYGSSKVGNMLQDLPVELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQ 109 (118)
Q Consensus 32 ~vhkvFG~sni~k~L~~l~~~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~ 109 (118)
.|..+-|...+-.+..+++++.=-..+..| -..-|+.|.-.-|..|.++..++..+++.+.++++.-+.|=+
T Consensus 140 avA~vlG~~m~~e~~~d~dvevLL~~ae~L------~~vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~ 211 (259)
T PF08657_consen 140 AVALVLGGVMHEEIVEDVDVEVLLRGAEKL------CNVYPLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLE 211 (259)
T ss_pred HHHHhccCcccccccccCCHHHHHHHHHHH------HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555554444443344443333333322 234599999999999999999999999999888876555433
No 108
>cd06457 M3A_MIP Peptidase M3 mitochondrial intermediate peptidase (MIP; EC 3.4.24.59) belongs to the widespread subfamily M3A, that show similarity to the Thimet oligopeptidase (TOP). It is one of three peptidases responsible for the proteolytic processing of both, nuclear and mitochondrial encoded precursor polypeptides targeted to the various subcompartments of the mitochondria. It cleaves intermediate-size proteins initially processed by mitochondrial processing peptidase (MPP) to yield a processing intermediate with a typical N-terminal octapeptide that is sequentially cleaved by MIP to mature-size protein. MIP cleaves precursor proteins of respiratory components, including subunits of the electron transport chain and tri-carboxylic acid cycle enzymes, and components of the mitochondrial genetic machinery, including ribosomal proteins, translation factors, and proteins required for mitochondrial DNA metabolism. It has been suggested that the human MIP (HMIP polypeptide; gene symbo
Probab=27.84 E-value=22 Score=30.39 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=19.0
Q ss_pred ccCCCCCCCC--chhHHHHHHHhccch
Q 038129 17 IFAPYFPAND--PHRFACVHKIYGSSK 41 (118)
Q Consensus 17 ~laPyFp~~~--~~~F~~vhkvFG~sn 41 (118)
-++||||-+. ..-|..+.++||+.=
T Consensus 125 ~l~~YFpl~~vl~gl~~~~~~lfgi~~ 151 (458)
T cd06457 125 NLSPYFSLGTVMEGLSRLFSRLYGIRL 151 (458)
T ss_pred HhcccCcHHHHHHHHHHHHHHHhCeEE
Confidence 4788999765 456778889999854
No 109
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=27.80 E-value=4.6e+02 Score=24.38 Aligned_cols=69 Identities=17% Similarity=0.168 Sum_probs=51.2
Q ss_pred HHHHHhccchhhhhhhCCCc--hhHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 038129 32 CVHKIYGSSKVGNMLQDLPV--ELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSH 107 (118)
Q Consensus 32 ~vhkvFG~sni~k~L~~l~~--~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~ 107 (118)
...++.|.+. .=.+||+ ..+-.+|.-++++|.. =-|.|..++.+|...+..++.|+...+.+-+.+..-
T Consensus 234 e~~r~ls~a~---~d~dlp~~~~~k~~~M~~~l~~ak~----~~~d~~~~~~KLraml~~~Ee~~~~~k~qs~~l~ql 304 (657)
T PLN02910 234 ENKRAIGEAT---SDAELHSSALDQAKAMGHVLSIAKD----QLYDCHTMARKLRAMLQSTERKVDALKKKSAFLIQL 304 (657)
T ss_pred HHHHHHhhcc---cccccCchHHHHHHHHHHHHHHHHh----cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443 2235665 5678899999988764 456799999999999999999999998877766543
No 110
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=27.67 E-value=1.8e+02 Score=20.41 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038129 77 VRMISLLQQQIHNAESQLVKARAEIAVLG 105 (118)
Q Consensus 77 ~G~I~~Lq~ql~~~~~EL~~~~~~la~~~ 105 (118)
+.-|..|+.++..+-+|-+.++-+....|
T Consensus 21 ~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr 49 (107)
T PF06156_consen 21 LEELEELKKQLQELLEENARLRIENEHLR 49 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555554444444444333
No 111
>PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=27.55 E-value=52 Score=21.54 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=17.7
Q ss_pred HHHHHHhccc--hhhhhhhCCCchhH
Q 038129 31 ACVHKIYGSS--KVGNMLQDLPVELR 54 (118)
Q Consensus 31 ~~vhkvFG~s--ni~k~L~~l~~~~R 54 (118)
.+-..+||.+ .|.++|+.||..++
T Consensus 51 isG~~~FGls~p~V~~lie~Lp~a~~ 76 (86)
T PF05965_consen 51 ISGPEMFGLSNPAVQRLIESLPGADK 76 (86)
T ss_dssp --HHHHHSTTSHHHHHHHTTSTTGGG
T ss_pred CCHhHhcCCCCHHHHHHHHhCCCcch
Confidence 3567899986 48999999996543
No 112
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=27.52 E-value=1.8e+02 Score=20.66 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhc
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHH 114 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~ 114 (118)
|..+..++..++.++..+-.+-+..+.-.+.|+.+
T Consensus 17 l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~ 51 (110)
T PRK13169 17 LGVLLKELGALKKQLAELLEENTALRLENDKLRER 51 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555544444444443
No 113
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=26.67 E-value=1.3e+02 Score=22.04 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
-|..|+..+..++.+|..+..+|...+.
T Consensus 36 EI~sL~~K~~~lE~eld~~~~~l~~~k~ 63 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKLEEQLKEAKE 63 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777766555
No 114
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=26.41 E-value=1.6e+02 Score=20.18 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhh
Q 038129 53 LRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELR 112 (118)
Q Consensus 53 ~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~ 112 (118)
.|..|+...--|...+.. --.-|..|..+|..++.++..+...+..|.....-|-
T Consensus 61 k~~rA~k~a~~e~k~~~~-----k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~ 115 (126)
T PF13863_consen 61 KRERAEKRAEEEKKKKEE-----KEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFLE 115 (126)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555443 4567888889999999999999988888887665543
No 115
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=26.28 E-value=1.6e+02 Score=19.45 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAVLGSH 107 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~~~~~ 107 (118)
+..++.+..+++.|-..++-|++...++
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l~~~ 71 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATLSSP 71 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCH
Confidence 6666677777777766666666665553
No 116
>PRK13879 conjugal transfer protein TrbJ; Provisional
Probab=26.16 E-value=1.5e+02 Score=24.08 Aligned_cols=42 Identities=10% Similarity=0.072 Sum_probs=28.4
Q ss_pred CCCcCcHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhchhhhhh
Q 038129 71 DPVYGCVRMISL---LQQQIHNAESQLVKARAEIAVLGSHAQELR 112 (118)
Q Consensus 71 DPV~Gc~G~I~~---Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~ 112 (118)
-||+-+...+.. .-.++.+...++...+++|..|+.+-+|+.
T Consensus 28 ipV~D~an~aqni~~a~~~v~q~~~Qi~Qlq~Qiqqy~nql~Nl~ 72 (253)
T PRK13879 28 IPVIDGTNLSQNIMTAIESVAQTLKQIEQYQTQLQQYENMLQNTM 72 (253)
T ss_pred CCeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 488888777554 344555666677777777777777766654
No 117
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=26.16 E-value=1.3e+02 Score=21.71 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 038129 78 RMISLLQQQIHNAESQLVKARAEIAVLGSH 107 (118)
Q Consensus 78 G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~ 107 (118)
|-+..|++++..+..+-..+.++|...-..
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~ 59 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKLMEE 59 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777766666666554433
No 118
>PLN02829 Probable galacturonosyltransferase
Probab=26.15 E-value=3.9e+02 Score=24.77 Aligned_cols=68 Identities=21% Similarity=0.299 Sum_probs=51.2
Q ss_pred HHHHHhccchhhhhhhCCCc--hhHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 32 CVHKIYGSSKVGNMLQDLPV--ELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 32 ~vhkvFG~sni~k~L~~l~~--~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
.+.++.|.+.. =.+||+ ..+-.+|+.++++|..- -|.|..++..|...+..++.|+...+.+-+.+..
T Consensus 220 e~~r~l~~a~~---d~~lp~~~~~~~~~m~~~i~~ak~~----~~d~~~~~~KLr~~l~~~Ee~~~~~~~q~~~l~~ 289 (639)
T PLN02829 220 EVQRVLGDASK---DSDLPKNANEKLKAMEQTLAKGKQM----QDDCSIVVKKLRAMLHSAEEQLRVHKKQTMFLTQ 289 (639)
T ss_pred HHHHHHhhccC---CCCCChhHHHHHHHHHHHHHHHHhc----ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555444 235563 56889999999988754 4669999999999999999999999887766654
No 119
>PF00172 Zn_clus: Fungal Zn(2)-Cys(6) binuclear cluster domain; InterPro: IPR001138 The N-terminal region of a number of fungal transcriptional regulatory proteins contains a Cys-rich motif that is involved in zinc-dependent binding of DNA. The region forms a binuclear Zn cluster, in which two Zn atoms are bound by six Cys residues [, ]. A wide range of proteins are known to contain this domain. These include the proteins involved in arginine, proline, pyrimidine, quinate, maltose and galactose metabolism; amide and GABA catabolism; leucine biosynthesis, amongst others.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1AJY_A 1ZME_C 2VEQ_A 1CLD_A 1PYI_B 1D66_A 3COQ_A 1AW6_A 2ER8_A 2ERE_A ....
Probab=25.87 E-value=35 Score=19.39 Aligned_cols=14 Identities=29% Similarity=0.933 Sum_probs=10.5
Q ss_pred CchhchHhhhCCCC
Q 038129 1 RCAACRHLRRRCPS 14 (118)
Q Consensus 1 ~CaaCk~~Rr~C~~ 14 (118)
+|..|+..+.+|..
T Consensus 2 aC~~Cr~rK~kCd~ 15 (40)
T PF00172_consen 2 ACDRCRRRKVKCDG 15 (40)
T ss_dssp SBHHHHHHTS--ST
T ss_pred cChHHHhhCcCcCC
Confidence 68899999999986
No 120
>PRK10884 SH3 domain-containing protein; Provisional
Probab=25.68 E-value=84 Score=24.56 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038129 81 SLLQQQIHNAESQLVKA 97 (118)
Q Consensus 81 ~~Lq~ql~~~~~EL~~~ 97 (118)
-.|+.|+..++++|+.+
T Consensus 96 p~le~el~~l~~~l~~~ 112 (206)
T PRK10884 96 PDLENQVKTLTDKLNNI 112 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 121
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=25.44 E-value=1.8e+02 Score=18.19 Aligned_cols=43 Identities=21% Similarity=0.214 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHH
Q 038129 55 AEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKAR 98 (118)
Q Consensus 55 ~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~ 98 (118)
.+...-|.-|=++|..|+- |+-.-|..|..+...++++|+..+
T Consensus 7 ~ELe~klkaerE~R~~d~~-~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 7 EELERKLKAEREARSLDRS-AARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHhHHhccCCch-hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777788888874 455666666666666666666554
No 122
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=25.36 E-value=1.6e+02 Score=22.57 Aligned_cols=57 Identities=18% Similarity=0.235 Sum_probs=24.2
Q ss_pred hhhhhhhCCCc--hhHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 41 KVGNMLQDLPV--ELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 41 ni~k~L~~l~~--~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
.|...|++=|. .+.++++.+|. +..|. -|.|+-.+.|+..+++++..++.+|...-.
T Consensus 10 ~V~~yL~~~PdFf~~~~~ll~~l~------~ph~~---~~avSL~erQ~~~LR~~~~~L~~~l~~Li~ 68 (225)
T PF04340_consen 10 DVAAYLRQHPDFFERHPELLAELR------LPHPS---GGAVSLVERQLERLRERNRQLEEQLEELIE 68 (225)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHhCHHHHHHcC------CCCCC---CCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555442 45666666653 44453 369999999999999999999888876544
No 123
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=24.78 E-value=1.8e+02 Score=22.32 Aligned_cols=43 Identities=7% Similarity=0.056 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHH
Q 038129 56 EAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKAR 98 (118)
Q Consensus 56 ~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~ 98 (118)
+++++=+-++--...||+-.-==.|..+...|..++..|+.+.
T Consensus 9 ~iv~a~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~ 51 (219)
T TIGR02977 9 DIVNSNLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTI 51 (219)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666777765444455555555555555555443
No 124
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.56 E-value=1.4e+02 Score=27.63 Aligned_cols=52 Identities=13% Similarity=0.241 Sum_probs=42.3
Q ss_pred HHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhc
Q 038129 59 DAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHH 114 (118)
Q Consensus 59 ~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~ 114 (118)
.||+-|+.++-.- -.+-|..|++.+.++..+|..++++....-.-++.+..+
T Consensus 92 esLLqESaakE~~----yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~ 143 (772)
T KOG0999|consen 92 ESLLQESAAKEEY----YLQKILELENELKQLRQELTNVQEENERLEKVHSDLKES 143 (772)
T ss_pred HHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4677777777653 578999999999999999999999999887777766554
No 125
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=24.55 E-value=1.7e+02 Score=17.57 Aligned_cols=26 Identities=31% Similarity=0.334 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAVLG 105 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~~~ 105 (118)
+..|+.++..++.+...++.+++..+
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666666666666666665543
No 126
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=24.28 E-value=2.4e+02 Score=20.94 Aligned_cols=63 Identities=21% Similarity=0.044 Sum_probs=27.6
Q ss_pred hhhhhhhCCC-chhHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038129 41 KVGNMLQDLP-VELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAV 103 (118)
Q Consensus 41 ni~k~L~~l~-~~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~ 103 (118)
.+.+.|+.-. +....+++-+++-++-.-..+-++.-+..-..+.++....++.++.++.++..
T Consensus 6 ~~v~~Le~~Gft~~QAe~i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~ 69 (177)
T PF07798_consen 6 KFVKRLEAAGFTEEQAEAIMKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQN 69 (177)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554322 33344444444333333222333333444445555555555555555555543
No 127
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=24.24 E-value=86 Score=16.50 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=16.9
Q ss_pred hhhhhhhCCCchhHHHHHHHHH
Q 038129 41 KVGNMLQDLPVELRAEAADAIC 62 (118)
Q Consensus 41 ni~k~L~~l~~~~R~~a~~SL~ 62 (118)
.+.++|++-.++-|..|+.+|-
T Consensus 4 ~l~~~l~D~~~~VR~~a~~~l~ 25 (31)
T PF02985_consen 4 ILLQLLNDPSPEVRQAAAECLG 25 (31)
T ss_dssp HHHHHHT-SSHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHH
Confidence 4678888888999999988764
No 128
>PRK13749 transcriptional regulator MerD; Provisional
Probab=23.86 E-value=2.5e+02 Score=20.09 Aligned_cols=35 Identities=11% Similarity=0.281 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhc
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHH 114 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~ 114 (118)
+..+..++..-.++|..++.+|.....-.+|-.+|
T Consensus 85 ~~~~~~~v~~~i~~L~~l~~~L~~l~~~~~~~~~~ 119 (121)
T PRK13749 85 LAVLRQLVERRREALADLEVQLATMPTEPAQHAES 119 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 44456677777788888888888776665554443
No 129
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=23.41 E-value=2.2e+02 Score=22.26 Aligned_cols=42 Identities=26% Similarity=0.298 Sum_probs=32.8
Q ss_pred hccchhhhhhhCCCchhHHHHHHHHHHHHhhhccCCCcCcHHH
Q 038129 37 YGSSKVGNMLQDLPVELRAEAADAICIEAECRVQDPVYGCVRM 79 (118)
Q Consensus 37 FG~sni~k~L~~l~~~~R~~a~~SL~YEA~~R~~DPV~Gc~G~ 79 (118)
+|-.-+.++|+.++++++...++.|.-....=..|| ||.+=+
T Consensus 164 ~G~~vvq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~-~Gn~vv 205 (322)
T cd07920 164 YGCRVIQRCLEHCSEEQREPLLEEILEHALELVQDQ-FGNYVV 205 (322)
T ss_pred cccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCC-chhhHH
Confidence 577778888888888889999998888877777775 776533
No 130
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=23.37 E-value=1.1e+02 Score=25.82 Aligned_cols=32 Identities=9% Similarity=0.080 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 038129 76 CVRMISLLQQQIHNAESQLVKARAEIAVLGSH 107 (118)
Q Consensus 76 c~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~ 107 (118)
-.---..|+.+|.++++|...++..|..|+.-
T Consensus 194 Li~ENRyL~erl~q~qeE~~l~k~~i~KYK~~ 225 (319)
T PF09789_consen 194 LIMENRYLKERLKQLQEEKELLKQTINKYKSA 225 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345689999999999999999999999873
No 131
>PLN03188 kinesin-12 family protein; Provisional
Probab=23.37 E-value=3.7e+02 Score=27.05 Aligned_cols=82 Identities=12% Similarity=0.161 Sum_probs=56.6
Q ss_pred CCCCCCCchhHHHHHHHhccchhhhhhhCCCch--hHHHHHHHHHHHHhhhcc--CCCcCc--HHHHHHHHHHHHHHHHH
Q 038129 20 PYFPANDPHRFACVHKIYGSSKVGNMLQDLPVE--LRAEAADAICIEAECRVQ--DPVYGC--VRMISLLQQQIHNAESQ 93 (118)
Q Consensus 20 PyFp~~~~~~F~~vhkvFG~sni~k~L~~l~~~--~R~~a~~SL~YEA~~R~~--DPV~Gc--~G~I~~Lq~ql~~~~~E 93 (118)
.+.|..+..--..+.--||-..-+-|+-.+.|. ...++++||-|-..++.. .|+..- -+.|..|+..|.+++.|
T Consensus 382 ~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~E 461 (1320)
T PLN03188 382 RHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDE 461 (1320)
T ss_pred CcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHH
Confidence 456666655555566667766666777778774 468999999999988752 343331 24556677888888888
Q ss_pred HHHHHHHH
Q 038129 94 LVKARAEI 101 (118)
Q Consensus 94 L~~~~~~l 101 (118)
|..++...
T Consensus 462 L~rLK~~~ 469 (1320)
T PLN03188 462 LQRVKANG 469 (1320)
T ss_pred HHHHHHhc
Confidence 88887764
No 132
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=22.81 E-value=93 Score=19.26 Aligned_cols=37 Identities=22% Similarity=0.432 Sum_probs=24.8
Q ss_pred cCCCCCCCCchhHHHHHHHhccchhhhhhh----CCCchhHHHHHHHHHH
Q 038129 18 FAPYFPANDPHRFACVHKIYGSSKVGNMLQ----DLPVELRAEAADAICI 63 (118)
Q Consensus 18 laPyFp~~~~~~F~~vhkvFG~sni~k~L~----~l~~~~R~~a~~SL~Y 63 (118)
.+||+|.+ ...|. .-+..+|+ .++|+.|...+.||+-
T Consensus 5 va~cYp~~-~~~Fp--------~~L~~lL~~~~~~L~p~lR~~lv~aLiL 45 (52)
T PF08158_consen 5 VAHCYPKE-TKDFP--------QELIDLLRNHHTVLDPDLRMKLVKALIL 45 (52)
T ss_pred cccccHHH-HHHHH--------HHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 46777763 34443 23445554 5899999999999974
No 133
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=22.80 E-value=1.2e+02 Score=27.17 Aligned_cols=29 Identities=28% Similarity=0.321 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038129 77 VRMISLLQQQIHNAESQLVKARAEIAVLG 105 (118)
Q Consensus 77 ~G~I~~Lq~ql~~~~~EL~~~~~~la~~~ 105 (118)
...|..|+.|+..|+.|...++++|+.-.
T Consensus 24 a~~i~~L~~ql~aLq~~v~eL~~~laa~~ 52 (514)
T PF11336_consen 24 ADQIKALQAQLQALQDQVNELRAKLAAKP 52 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45688899999999999999999887543
No 134
>PRK10698 phage shock protein PspA; Provisional
Probab=22.75 E-value=2.1e+02 Score=22.35 Aligned_cols=44 Identities=18% Similarity=0.126 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 038129 56 EAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARA 99 (118)
Q Consensus 56 ~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~ 99 (118)
++++|=+-++--...||.-.-==+|..++..+..++..++.+.+
T Consensus 9 ~ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A 52 (222)
T PRK10698 9 DIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALA 52 (222)
T ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666666654444555555555555555554433
No 135
>PRK10280 dipeptidyl carboxypeptidase II; Provisional
Probab=22.69 E-value=36 Score=31.08 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=21.3
Q ss_pred ccCCCCCCCCc---hhHHHHHHHhccchh
Q 038129 17 IFAPYFPANDP---HRFACVHKIYGSSKV 42 (118)
Q Consensus 17 ~laPyFp~~~~---~~F~~vhkvFG~sni 42 (118)
-++||||-+.- --|..+.++||.+=+
T Consensus 355 ~l~~YFpl~~Vl~~Glf~l~~~LfGi~f~ 383 (681)
T PRK10280 355 QLKPYFELNTVLNEGVFWTANQLFGIKFV 383 (681)
T ss_pred HcCCcCcHHHHHHHhHHHHHHHHcCeEEE
Confidence 58999998863 468899999998744
No 136
>PRK13874 conjugal transfer protein TrbJ; Provisional
Probab=22.34 E-value=2e+02 Score=22.80 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=27.3
Q ss_pred CCCcCcHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhchhhhhh
Q 038129 71 DPVYGCVRMISLLQ---QQIHNAESQLVKARAEIAVLGSHAQELR 112 (118)
Q Consensus 71 DPV~Gc~G~I~~Lq---~ql~~~~~EL~~~~~~la~~~~~~~~~~ 112 (118)
=|||.+...+.... +.++++..++..+++++.+|..+-+|+.
T Consensus 27 ~~V~D~~N~~qn~ltaa~~l~Qi~nQiqqlqnQ~qm~~Nq~~Nl~ 71 (230)
T PRK13874 27 WIVYDPTNYAQNVLTAARALQQINNQITSLQNEAQMLINQARNLA 71 (230)
T ss_pred CceeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 37777766655443 4455555667777788888877776653
No 137
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=22.14 E-value=1.5e+02 Score=24.63 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 038129 76 CVRMISLLQQQIHNAESQLVKARAEIAVLGSHA 108 (118)
Q Consensus 76 c~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~ 108 (118)
.-..+..|..|+..++.+|..+..+|..|+..+
T Consensus 169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 169 AQKAALWFVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344678899999999999999999999999865
No 138
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=21.73 E-value=2.1e+02 Score=22.36 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhhccc
Q 038129 87 IHNAESQLVKARAEIAVLGSHAQELRHHVQ 116 (118)
Q Consensus 87 l~~~~~EL~~~~~~la~~~~~~~~~~~~~~ 116 (118)
+-.++.||..++.+|...+.+.+.|.++|.
T Consensus 164 ~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 164 LLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346677888888888888888888877764
No 139
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=21.67 E-value=1.7e+02 Score=22.38 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
+..|+.++..++.|+..+..++..|..
T Consensus 113 ~~~l~~~~e~Le~e~~~L~~~~~~~~e 139 (161)
T TIGR02894 113 NESLQKRNEELEKELEKLRQRLSTIEE 139 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777666665554
No 140
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=21.39 E-value=2.1e+02 Score=18.72 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhhhh
Q 038129 82 LLQQQIHNAESQLVKARAEIAVLGSHAQELR 112 (118)
Q Consensus 82 ~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~ 112 (118)
.|+..|+.++..+..+..-+..++.+...|.
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls 32 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELS 32 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677778888888888888888877776664
No 141
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=21.33 E-value=1.1e+02 Score=24.85 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 038129 76 CVRMISLLQQQIHNAESQLVKAR 98 (118)
Q Consensus 76 c~G~I~~Lq~ql~~~~~EL~~~~ 98 (118)
...-|..|+.+|..|.+||+.+-
T Consensus 120 AlqKIsALEdELs~LRaQIA~IV 142 (253)
T PF05308_consen 120 ALQKISALEDELSRLRAQIAKIV 142 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999874
No 142
>PF07208 DUF1414: Protein of unknown function (DUF1414); InterPro: IPR009857 This family consists of several hypothetical bacterial proteins of around 70 residues in length. Members of this family are often referred to as YejL. The function of this family is unknown.; PDB: 2JPQ_A 2JUZ_B 2JUW_B 2QTI_A 2OTA_A 2JR2_A 2JRX_A.
Probab=21.25 E-value=89 Score=19.05 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=13.6
Q ss_pred hhhhhh-CCCchhHHHHHHHH
Q 038129 42 VGNMLQ-DLPVELRAEAADAI 61 (118)
Q Consensus 42 i~k~L~-~l~~~~R~~a~~SL 61 (118)
++++|+ ++|+++|...+++-
T Consensus 16 vTniln~~V~~~qR~~iAe~F 36 (44)
T PF07208_consen 16 VTNILNTSVPPAQRQAIAEKF 36 (44)
T ss_dssp HHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHH
Confidence 345554 89999998887763
No 143
>cd09071 FAR_C C-terminal domain of fatty acyl CoA reductases. C-terminal domain of fatty acyl CoA reductases, a family of SDR-like proteins. SDRs or short-chain dehydrogenases/reductases are Rossmann-fold NAD(P)H-binding proteins. Many proteins in this FAR_C family may function as fatty acyl-CoA reductases (FARs), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as the biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. The function of this C-terminal domain is unclear.
Probab=20.96 E-value=44 Score=21.67 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=17.4
Q ss_pred HhccchhhhhhhCCCchhHH
Q 038129 36 IYGSSKVGNMLQDLPVELRA 55 (118)
Q Consensus 36 vFG~sni~k~L~~l~~~~R~ 55 (118)
.|...|+.++.+.+++++|.
T Consensus 46 ~F~~~n~~~L~~~l~~~Dr~ 65 (92)
T cd09071 46 RFDNDNTRALWERLSEEDRE 65 (92)
T ss_pred EeeCcHHHHHHHHCCHHHHH
Confidence 46779999999999998886
No 144
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.68 E-value=89 Score=27.82 Aligned_cols=31 Identities=13% Similarity=0.287 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhhhcc
Q 038129 84 QQQIHNAESQLVKARAEIAVLGSHAQELRHHV 115 (118)
Q Consensus 84 q~ql~~~~~EL~~~~~~la~~~~~~~~~~~~~ 115 (118)
-.++..+| +|+.+++||+..+.|...+...|
T Consensus 24 ~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v 54 (489)
T PF11853_consen 24 ADDIDLLQ-KIEALKKQLEELKAQQDDLNDRV 54 (489)
T ss_pred hhhhHHHH-HHHHHHHHHHHHHHhhccccccc
Confidence 34444444 66666666666666655554444
No 145
>PRK11519 tyrosine kinase; Provisional
Probab=20.64 E-value=1.5e+02 Score=26.94 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 038129 78 RMISLLQQQIHNAESQLVKARAEIAVLGSHAQ 109 (118)
Q Consensus 78 G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~ 109 (118)
..+..|++|+..++.+|..+...|+.|+.++.
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~ 298 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAFRQDKD 298 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56788999999999999999999999998754
No 146
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=20.60 E-value=2.5e+02 Score=19.31 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
+..|++++..++..+..+...+..++.
T Consensus 8 ~~ql~~~i~~l~~~i~~l~~~i~e~~~ 34 (126)
T TIGR00293 8 LQILQQQVESLQAQIAALRALIAELET 34 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555543
No 147
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=20.60 E-value=1.9e+02 Score=23.27 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhc
Q 038129 82 LLQQQIHNAESQLVKARAEIAVLGSHAQELRHH 114 (118)
Q Consensus 82 ~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~ 114 (118)
.|+.++.+.+.++..++.+++..+.-.-.|-+.
T Consensus 97 ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEK 129 (248)
T PF08172_consen 97 ELEEELRKQQQTISSLRREVESLRADNVKLYEK 129 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666665554444443
No 148
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=20.30 E-value=1.6e+02 Score=15.60 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038129 80 ISLLQQQIHNAESQLVK 96 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~ 96 (118)
|..|...|..++.+|+.
T Consensus 3 ~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSE 19 (23)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566666666666654
No 149
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.15 E-value=2.3e+02 Score=19.58 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
.+..|+.++..+++++..++..+..|..
T Consensus 7 ~~~~l~~~i~~l~~~~~~l~~~~~e~~~ 34 (129)
T cd00584 7 QLQVLQQEIEELQQELARLNEAIAEYEQ 34 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666655543
No 150
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=20.06 E-value=2.5e+02 Score=17.98 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 77 VRMISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 77 ~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
.+.|..|...|...+.++..++.++...+.
T Consensus 51 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 51 QRYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666555443
No 151
>PRK01203 prefoldin subunit alpha; Provisional
Probab=20.03 E-value=1.3e+02 Score=22.15 Aligned_cols=25 Identities=12% Similarity=0.290 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAVL 104 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~~ 104 (118)
+..+++|+..++.|+..++.-+..+
T Consensus 9 ~~~~~~q~e~l~~ql~~L~~a~se~ 33 (130)
T PRK01203 9 LNYIESLISSVDSQIDSLNKTLSEV 33 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544444
Done!