Query 038129
Match_columns 118
No_of_seqs 110 out of 303
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 13:18:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038129.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038129hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 88.6 0.7 2.4E-05 25.4 3.7 28 78-105 2-29 (33)
2 4e61_A Protein BIM1; EB1-like 80.1 3.3 0.00011 28.6 5.0 37 75-111 1-37 (106)
3 2l5g_B Putative uncharacterize 74.7 5.6 0.00019 23.3 4.2 32 82-113 6-37 (42)
4 3nmd_A CGMP dependent protein 72.4 6.8 0.00023 25.3 4.6 29 78-106 40-68 (72)
5 3q0x_A Centriole protein; cent 71.4 5.3 0.00018 30.9 4.6 35 79-113 179-213 (228)
6 3r4h_A Coiled coil helix CC-TE 70.6 7.4 0.00025 21.3 3.8 29 78-106 2-30 (34)
7 1nkp_B MAX protein, MYC proto- 67.4 10 0.00035 24.0 4.7 35 76-110 45-79 (83)
8 2zvf_A Alanyl-tRNA synthetase; 67.3 27 0.00091 24.3 7.3 47 59-105 13-59 (171)
9 2ke4_A CDC42-interacting prote 65.0 28 0.00096 23.3 7.4 43 62-105 47-89 (98)
10 2xdj_A Uncharacterized protein 64.9 6.6 0.00023 25.7 3.4 29 78-106 20-48 (83)
11 1zxa_A CGMP-dependent protein 64.8 11 0.00038 23.9 4.3 28 79-106 26-53 (67)
12 3t97_B Nuclear pore complex pr 59.6 19 0.00065 22.8 4.7 38 78-115 10-47 (65)
13 1am9_A Srebp-1A, protein (ster 59.3 16 0.00056 23.3 4.5 29 76-104 48-76 (82)
14 3kin_B Kinesin heavy chain; mo 58.2 27 0.00092 23.8 5.7 86 20-105 20-116 (117)
15 1zme_C Proline utilization tra 57.8 11 0.00037 22.5 3.3 26 77-102 43-68 (70)
16 2wt7_A Proto-oncogene protein 56.2 20 0.00068 21.8 4.4 35 79-113 24-58 (63)
17 1t2k_D Cyclic-AMP-dependent tr 53.5 28 0.00097 20.8 4.7 35 79-113 23-57 (61)
18 3uun_A Dystrophin; triple heli 51.9 41 0.0014 21.0 5.8 45 69-113 27-71 (119)
19 1jnm_A Proto-oncogene C-JUN; B 51.6 32 0.0011 20.7 4.7 37 78-114 22-58 (62)
20 2dgc_A Protein (GCN4); basic d 50.7 29 0.00099 21.3 4.4 30 78-107 30-59 (63)
21 3uul_A Utrophin; spectrin repe 50.3 45 0.0015 21.0 6.5 52 62-113 18-71 (118)
22 1hlo_A Protein (transcription 47.4 21 0.0007 22.5 3.5 25 76-100 55-79 (80)
23 2yy0_A C-MYC-binding protein; 46.9 22 0.00074 21.3 3.3 25 80-104 21-45 (53)
24 3i00_A HIP-I, huntingtin-inter 46.7 24 0.00082 24.5 4.0 23 78-100 40-62 (120)
25 1urf_A Protein kinase C-like 1 46.3 37 0.0013 22.3 4.6 44 37-103 25-68 (81)
26 1dh3_A Transcription factor CR 46.0 40 0.0014 20.0 4.5 28 79-106 23-50 (55)
27 1nlw_A MAD protein, MAX dimeri 44.7 41 0.0014 21.4 4.6 29 77-105 46-74 (80)
28 3l4f_A RHO guanine nucleotide 44.4 52 0.0018 20.5 4.9 39 77-115 6-44 (61)
29 1yhn_B RILP, RAB interacting l 43.5 38 0.0013 21.3 4.1 25 82-106 7-31 (65)
30 3myf_A Sensor protein; HPT, hi 41.7 75 0.0026 21.1 7.5 65 28-100 51-115 (119)
31 2wt7_B Transcription factor MA 41.5 44 0.0015 22.2 4.5 65 42-106 11-83 (90)
32 1gk6_A Vimentin; intermediate 41.3 45 0.0016 20.0 4.2 23 82-104 4-26 (59)
33 3edu_A Beta-I spectrin, spectr 40.7 33 0.0011 24.3 4.1 52 62-113 124-175 (218)
34 3ra3_B P2F; coiled coil domain 40.1 39 0.0013 17.6 3.2 25 80-104 2-26 (28)
35 1ci6_A Transcription factor AT 40.1 42 0.0014 20.4 4.0 33 80-112 25-57 (63)
36 1ykh_B RNA polymerase II holoe 39.4 93 0.0032 21.5 6.8 73 26-115 51-129 (132)
37 2w6a_A ARF GTPase-activating p 39.4 59 0.002 20.3 4.5 34 79-112 28-61 (63)
38 1x8y_A Lamin A/C; structural p 38.7 55 0.0019 21.0 4.6 27 79-105 29-55 (86)
39 2z2q_B Coat protein gamma; wil 38.5 29 0.00099 20.3 2.8 24 71-94 19-42 (44)
40 1lqb_D HIF-1 alpha, hypoxia-in 37.6 8.2 0.00028 21.5 0.3 13 17-31 13-25 (34)
41 3ra3_A P1C; coiled coil domain 37.5 34 0.0011 17.9 2.7 24 82-105 4-27 (28)
42 1gk4_A Vimentin; intermediate 37.4 60 0.002 20.6 4.6 40 58-104 13-52 (84)
43 3t97_C Nuclear pore glycoprote 37.1 67 0.0023 19.9 4.6 37 79-115 13-49 (64)
44 2w6b_A RHO guanine nucleotide 36.8 72 0.0025 19.5 4.9 37 77-113 9-45 (56)
45 1nov_D Nodamura virus coat pro 35.3 35 0.0012 20.0 2.8 24 71-94 19-42 (44)
46 1l8d_A DNA double-strand break 35.1 76 0.0026 20.5 4.9 34 77-110 63-96 (112)
47 3lbx_A Spectrin alpha chain, e 35.0 72 0.0025 22.0 5.1 55 59-113 69-123 (161)
48 2y9y_A Imitation switch protei 34.8 1.9E+02 0.0064 23.7 8.8 83 28-112 132-218 (374)
49 2l10_A Talin-1; helical bundle 34.5 1E+02 0.0035 22.2 5.9 61 55-116 11-73 (158)
50 2wg5_A General control protein 34.3 47 0.0016 22.2 3.8 29 80-108 9-37 (109)
51 2xv5_A Lamin-A/C; structural p 34.0 89 0.0031 19.7 5.1 25 80-104 7-31 (74)
52 3f31_A Spectrin alpha chain, b 33.8 71 0.0024 21.6 4.8 55 58-112 58-112 (149)
53 1k8k_G P16, ARP2/3 complex 16 33.0 47 0.0016 24.0 3.8 44 19-62 62-111 (151)
54 3ol1_A Vimentin; structural ge 32.2 84 0.0029 21.2 4.9 35 78-112 20-54 (119)
55 1yke_B RNA polymerase II holoe 32.2 1.4E+02 0.0046 21.3 6.3 72 26-114 51-128 (151)
56 1nkp_A C-MYC, MYC proto-oncoge 32.0 84 0.0029 20.2 4.7 31 77-107 51-81 (88)
57 1gd2_E Transcription factor PA 31.5 97 0.0033 19.4 5.1 33 79-111 30-62 (70)
58 1lrv_A LRV, leucine-rich repea 31.4 18 0.00062 27.3 1.5 55 1-61 13-74 (244)
59 3o0z_A RHO-associated protein 31.4 54 0.0019 24.1 4.0 38 78-115 90-127 (168)
60 3hls_A Guanylate cyclase solub 31.1 79 0.0027 19.4 4.2 34 82-115 21-54 (66)
61 3pbf_A Pulmonary surfactant-as 30.1 49 0.0017 21.7 3.4 25 79-103 3-27 (148)
62 3qh9_A Liprin-beta-2; coiled-c 30.1 65 0.0022 21.1 3.8 23 79-101 55-77 (81)
63 1nkp_A C-MYC, MYC proto-oncoge 30.0 1.1E+02 0.0036 19.6 4.9 41 76-116 43-83 (88)
64 1buu_A Protein (mannose-bindin 29.6 43 0.0015 22.9 3.1 21 79-99 24-44 (168)
65 3u1c_A Tropomyosin alpha-1 cha 29.3 78 0.0027 20.8 4.2 29 77-105 43-71 (101)
66 4emc_A Monopolin complex subun 29.3 65 0.0022 24.2 4.2 27 81-107 30-56 (190)
67 1ic2_A Tropomyosin alpha chain 28.6 87 0.003 19.6 4.2 49 53-105 20-68 (81)
68 2jr2_A UPF0352 protein CPS_261 28.4 34 0.0012 22.2 2.2 19 42-60 41-59 (76)
69 3mq7_A Bone marrow stromal ant 28.1 90 0.0031 21.9 4.4 32 80-111 73-104 (121)
70 2xdj_A Uncharacterized protein 28.0 61 0.0021 21.0 3.4 27 79-105 28-54 (83)
71 3sjb_C Golgi to ER traffic pro 28.0 79 0.0027 21.1 4.0 37 76-112 47-83 (93)
72 1jcd_A Major outer membrane li 27.3 97 0.0033 18.5 4.0 23 80-102 13-35 (52)
73 3edv_A Spectrin beta chain, br 26.5 1.9E+02 0.0066 21.2 7.7 50 64-113 131-180 (323)
74 2k48_A Nucleoprotein; viral pr 26.4 1E+02 0.0036 21.1 4.5 30 77-106 34-63 (107)
75 1nlw_A MAD protein, MAX dimeri 26.0 1.3E+02 0.0044 19.0 4.8 40 77-116 39-78 (80)
76 2p9x_A Hypothetical protein PH 26.0 22 0.00076 24.1 1.0 15 25-39 44-59 (99)
77 3tnu_B Keratin, type II cytosk 25.9 1.1E+02 0.0037 20.7 4.6 40 58-104 62-101 (129)
78 1uuj_A Platelet-activating fac 25.4 32 0.0011 22.8 1.6 24 80-103 60-83 (88)
79 1nkp_B MAX protein, MYC proto- 25.3 1.3E+02 0.0043 18.7 4.9 40 76-115 38-77 (83)
80 3mov_A Lamin-B1; LMNB1, B-type 25.0 1.2E+02 0.0042 19.8 4.6 38 58-102 24-61 (95)
81 3q0x_A Centriole protein; cent 25.0 1E+02 0.0034 23.6 4.6 32 81-112 188-219 (228)
82 2er8_A Regulatory protein Leu3 24.9 39 0.0013 20.0 1.9 15 1-15 5-19 (72)
83 3bbp_D GRIP and coiled-coil do 24.7 1E+02 0.0036 19.6 3.9 55 32-97 7-62 (71)
84 3viq_B Mating-type switching p 24.6 1E+02 0.0035 20.2 4.0 21 80-100 10-30 (85)
85 3tnu_A Keratin, type I cytoske 24.5 1.2E+02 0.004 20.6 4.6 41 57-104 63-103 (131)
86 1u5p_A Spectrin alpha chain, b 24.4 1.8E+02 0.0061 20.1 5.7 44 70-113 134-177 (216)
87 4b6x_A AVRRPS4, avirulence pro 24.4 1.6E+02 0.0054 19.5 4.9 36 76-111 53-88 (90)
88 3azd_A Short alpha-tropomyosin 24.3 18 0.0006 20.2 0.2 24 80-103 6-29 (37)
89 2wt7_B Transcription factor MA 24.0 1.6E+02 0.0055 19.4 6.6 33 79-111 49-81 (90)
90 1fxk_C Protein (prefoldin); ar 24.0 1.1E+02 0.0039 20.3 4.4 25 82-106 5-29 (133)
91 3cxj_A Uncharacterized protein 23.5 43 0.0015 24.5 2.2 28 43-70 66-93 (165)
92 3e98_A GAF domain of unknown f 23.2 77 0.0026 24.0 3.7 57 41-106 35-93 (252)
93 3twe_A Alpha4H; unknown functi 23.0 89 0.0031 16.1 3.4 22 81-102 4-25 (27)
94 3vlc_E Golgi to ER traffic pro 22.3 27 0.00094 23.5 0.9 37 77-113 55-91 (94)
95 4emc_A Monopolin complex subun 22.2 79 0.0027 23.8 3.5 36 80-115 36-71 (190)
96 1m3w_A H10H24; four-helix bund 22.0 1E+02 0.0035 16.5 4.0 23 78-100 4-26 (32)
97 2xgj_A ATP-dependent RNA helic 22.0 1.2E+02 0.004 27.5 5.1 55 43-100 862-916 (1010)
98 1gu4_A CAAT/enhancer binding p 22.0 1.4E+02 0.0048 19.0 4.2 28 79-106 44-71 (78)
99 1ofc_X ISWI protein; nuclear p 21.8 3E+02 0.01 21.7 8.7 82 27-112 118-204 (304)
100 1wt6_A Myotonin-protein kinase 21.8 1.2E+02 0.004 19.9 3.8 22 90-111 36-57 (81)
101 3mq7_A Bone marrow stromal ant 21.7 1.3E+02 0.0045 21.0 4.3 27 76-102 76-102 (121)
102 3mud_A DNA repair protein XRCC 21.6 1.5E+02 0.005 21.9 4.8 45 51-106 119-163 (175)
103 2zxx_A Geminin; coiled-coil, c 21.5 1.2E+02 0.0042 19.6 3.9 29 78-106 34-62 (79)
104 3dwl_G Actin-related protein 2 21.4 92 0.0032 22.5 3.6 44 19-62 63-112 (152)
105 1uii_A Geminin; human, DNA rep 21.1 1.5E+02 0.005 19.4 4.2 30 77-106 45-74 (83)
106 2pbi_A Regulator of G-protein 21.1 58 0.002 26.9 2.8 68 28-95 144-236 (424)
107 2dk8_A DNA-directed RNA polyme 21.0 72 0.0024 20.6 2.7 26 41-66 34-59 (81)
108 3swk_A Vimentin; cytoskeleton, 20.8 85 0.0029 20.2 3.0 32 80-111 2-33 (86)
109 2ic6_A Nucleocapsid protein; h 20.7 1.1E+02 0.0038 19.8 3.5 29 77-105 4-32 (78)
110 3kqg_A Langerin, C-type lectin 20.4 1.5E+02 0.0051 20.0 4.5 25 78-102 16-40 (182)
111 1ef1_C Moesin; membrane, FERM 20.4 35 0.0012 22.7 1.1 18 81-98 29-46 (90)
112 2ic9_A Nucleocapsid protein; h 20.1 1.4E+02 0.0046 20.1 4.0 28 78-105 5-32 (96)
113 3w03_C DNA repair protein XRCC 20.1 1.5E+02 0.005 22.0 4.6 30 76-105 150-179 (184)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=88.56 E-value=0.7 Score=25.39 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038129 78 RMISLLQQQIHNAESQLVKARAEIAVLG 105 (118)
Q Consensus 78 G~I~~Lq~ql~~~~~EL~~~~~~la~~~ 105 (118)
|.|..|.++|..++.|++.++-+++..+
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999988765
No 2
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=80.10 E-value=3.3 Score=28.62 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=31.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Q 038129 75 GCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQEL 111 (118)
Q Consensus 75 Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~ 111 (118)
|..|.+..++.++.+.+.++..+++++..++..-..+
T Consensus 1 ~~~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~l 37 (106)
T 4e61_A 1 GPLGSLVAIQAELTKSQETIGSLNEEIEQYKGTVSTL 37 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999998887765544
No 3
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=74.72 E-value=5.6 Score=23.26 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhhhhh
Q 038129 82 LLQQQIHNAESQLVKARAEIAVLGSHAQELRH 113 (118)
Q Consensus 82 ~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~ 113 (118)
.|-++|..+-.|++++.++|..++....+|-+
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999988777654
No 4
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=72.42 E-value=6.8 Score=25.30 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 78 RMISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 78 G~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
..|..|+.+|.+...++..++.+|-.|++
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46888999999999999999999988875
No 5
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=71.38 E-value=5.3 Score=30.85 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhh
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVLGSHAQELRH 113 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~ 113 (118)
-...|++.+.+.++|.++.+++|+.+|.|.+++++
T Consensus 179 kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~ 213 (228)
T 3q0x_A 179 TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLRE 213 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999999999999998888775
No 6
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=70.63 E-value=7.4 Score=21.34 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 78 RMISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 78 G~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
|.+....+++...+.||+.++-+|+.+++
T Consensus 2 gelaaikqelaaikkelaaikfelaaikq 30 (34)
T 3r4h_A 2 GELAAIKQELAAIKKELAAIKFELAAIKQ 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566778888888888888888887764
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=67.41 E-value=10 Score=24.05 Aligned_cols=35 Identities=11% Similarity=0.273 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Q 038129 76 CVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQE 110 (118)
Q Consensus 76 c~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~ 110 (118)
.+..|..|+.++..++.|+..++.+....+.+-+.
T Consensus 45 Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 45 ATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899988888888888888887776665443
No 8
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=67.35 E-value=27 Score=24.30 Aligned_cols=47 Identities=11% Similarity=0.096 Sum_probs=36.3
Q ss_pred HHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038129 59 DAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLG 105 (118)
Q Consensus 59 ~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~ 105 (118)
..++-+...-..-|...-...|..|+.++..++.|+..++.+++.+.
T Consensus 13 ~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 13 ERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555557778889999999999999999999998875
No 9
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=65.02 E-value=28 Score=23.25 Aligned_cols=43 Identities=19% Similarity=0.098 Sum_probs=29.4
Q ss_pred HHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038129 62 CIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLG 105 (118)
Q Consensus 62 ~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~ 105 (118)
+|+.+.=.-||-. +.+-|......|..+++++...+..|+...
T Consensus 47 vY~~nP~~GD~~s-~~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 47 VYEKTPQMGDPAS-LEPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHCGGGCCGGG-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4665555555544 367777777788888888888777777653
No 10
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=64.90 E-value=6.6 Score=25.74 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 78 RMISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 78 G~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
..++.|++||.+++.|++.++.++....-
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~ 48 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQY 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 35678888888888888888777765443
No 11
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=64.79 E-value=11 Score=23.93 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
.|..|+..++....|+..++.+|-.|++
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888899999999999999988876
No 12
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=59.60 E-value=19 Score=22.75 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhcc
Q 038129 78 RMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHHV 115 (118)
Q Consensus 78 G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~~ 115 (118)
+.+-.+...|.+++...+.+.++++.|+--...|.|+|
T Consensus 10 ~~Ld~i~~el~eLq~~~~~~~aki~e~krkl~eLsHRi 47 (65)
T 3t97_B 10 TRLDIISEDISELQKNQTTTMAKIAQYKRKLMDLSHRT 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34556677888888888999999999999999999986
No 13
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=59.32 E-value=16 Score=23.27 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038129 76 CVRMISLLQQQIHNAESQLVKARAEIAVL 104 (118)
Q Consensus 76 c~G~I~~Lq~ql~~~~~EL~~~~~~la~~ 104 (118)
.+..|..|+.++..++.|+..++..+...
T Consensus 48 Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 48 AIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46778888888888888888888776643
No 14
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=58.20 E-value=27 Score=23.77 Aligned_cols=86 Identities=8% Similarity=0.035 Sum_probs=50.1
Q ss_pred CCCCCCCchhHHHHHHHhccchhhhhhhCCCch--hHHHHHHHHHHHHhhhcc------CCCcCcHH---HHHHHHHHHH
Q 038129 20 PYFPANDPHRFACVHKIYGSSKVGNMLQDLPVE--LRAEAADAICIEAECRVQ------DPVYGCVR---MISLLQQQIH 88 (118)
Q Consensus 20 PyFp~~~~~~F~~vhkvFG~sni~k~L~~l~~~--~R~~a~~SL~YEA~~R~~------DPV~Gc~G---~I~~Lq~ql~ 88 (118)
++.|..+..--....-.||...-+-|+-.+.|. .-+++++||-|-+.++.. +-.....- .+.....++.
T Consensus 20 ~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~~~~~~~l~~~~~~e~~~~~ 99 (117)
T 3kin_B 20 THVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNK 99 (117)
T ss_dssp SSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCBCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecCcCCHHHHHHHHHHHHHHHH
Confidence 355655554444556667776666677777654 568999999999888642 11111222 2223334444
Q ss_pred HHHHHHHHHHHHHHHhh
Q 038129 89 NAESQLVKARAEIAVLG 105 (118)
Q Consensus 89 ~~~~EL~~~~~~la~~~ 105 (118)
.++.++..++.+|..+|
T Consensus 100 ~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 100 ALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 55555566666665554
No 15
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=57.81 E-value=11 Score=22.46 Aligned_cols=26 Identities=12% Similarity=0.268 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038129 77 VRMISLLQQQIHNAESQLVKARAEIA 102 (118)
Q Consensus 77 ~G~I~~Lq~ql~~~~~EL~~~~~~la 102 (118)
-+.|..|+.++..++.+|..++..|+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45688899999999999988887654
No 16
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=56.21 E-value=20 Score=21.77 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhh
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVLGSHAQELRH 113 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~ 113 (118)
.+..|+.++..++.+-..++.++...+.+-++|..
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888888777776666654
No 17
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=53.54 E-value=28 Score=20.80 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhh
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVLGSHAQELRH 113 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~ 113 (118)
.+..|+.++..+..+...++.++...+.+-.+|..
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666665555543
No 18
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=51.89 E-value=41 Score=21.04 Aligned_cols=45 Identities=9% Similarity=0.015 Sum_probs=39.2
Q ss_pred ccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhh
Q 038129 69 VQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRH 113 (118)
Q Consensus 69 ~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~ 113 (118)
..+|+++-...|..+..+...++.||..-+..+.......+.|+.
T Consensus 27 ~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~ 71 (119)
T 3uun_A 27 AQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIG 71 (119)
T ss_dssp HHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999888887777753
No 19
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=51.64 E-value=32 Score=20.68 Aligned_cols=37 Identities=14% Similarity=0.271 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhc
Q 038129 78 RMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHH 114 (118)
Q Consensus 78 G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~ 114 (118)
..+..|+..+..++.+...++.++...+.+-.+|..-
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777777777777776666665443
No 20
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=50.65 E-value=29 Score=21.26 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 038129 78 RMISLLQQQIHNAESQLVKARAEIAVLGSH 107 (118)
Q Consensus 78 G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~ 107 (118)
..+..|+.++..++.+...+..++...+.+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888887776654
No 21
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=50.32 E-value=45 Score=20.96 Aligned_cols=52 Identities=13% Similarity=0.050 Sum_probs=42.3
Q ss_pred HHHHhhh--ccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhh
Q 038129 62 CIEAECR--VQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRH 113 (118)
Q Consensus 62 ~YEA~~R--~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~ 113 (118)
+-|++.. ..+|+++-...|..+..+...++.||..-+..+.......+.|+.
T Consensus 18 L~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~ 71 (118)
T 3uul_A 18 LLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMT 71 (118)
T ss_dssp HHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433 458999999999999999999999999999999888887777754
No 22
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=47.41 E-value=21 Score=22.48 Aligned_cols=25 Identities=8% Similarity=0.280 Sum_probs=17.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 038129 76 CVRMISLLQQQIHNAESQLVKARAE 100 (118)
Q Consensus 76 c~G~I~~Lq~ql~~~~~EL~~~~~~ 100 (118)
.+..|..|+.++..++.|+..++.+
T Consensus 55 Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 55 ATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777777777777777766543
No 23
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=46.94 E-value=22 Score=21.27 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAVL 104 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~~ 104 (118)
+-.|+.++..++.++..++++++..
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 24
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=46.66 E-value=24 Score=24.48 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038129 78 RMISLLQQQIHNAESQLVKARAE 100 (118)
Q Consensus 78 G~I~~Lq~ql~~~~~EL~~~~~~ 100 (118)
.+|..|.++|.++++||+..+.+
T Consensus 40 ~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 40 RVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999998887644
No 25
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=46.27 E-value=37 Score=22.27 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=29.3
Q ss_pred hccchhhhhhhCCCchhHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038129 37 YGSSKVGNMLQDLPVELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAV 103 (118)
Q Consensus 37 FG~sni~k~L~~l~~~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~ 103 (118)
-|+.|+++++.+-++.+|.-...+ |+.+...+.-++.++.+|..
T Consensus 25 ~GAENmi~~y~~g~~~drKlLaeA-----------------------QqmL~DSk~KIe~lRmqI~k 68 (81)
T 1urf_A 25 QGAENMIQTYSNGSTKDRKLLLTA-----------------------QQMLQDSKTKIDIIRMQLRR 68 (81)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchhHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHH
Confidence 589999999998887777543322 55555666666666655543
No 26
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=46.01 E-value=40 Score=20.03 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
.+..|+.++.+++.|...++.++...+.
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777766543
No 27
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=44.66 E-value=41 Score=21.41 Aligned_cols=29 Identities=21% Similarity=0.086 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038129 77 VRMISLLQQQIHNAESQLVKARAEIAVLG 105 (118)
Q Consensus 77 ~G~I~~Lq~ql~~~~~EL~~~~~~la~~~ 105 (118)
+..|..|+.+...++.|...++.+....+
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~ 74 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLK 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666555555544433
No 28
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=44.44 E-value=52 Score=20.50 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhcc
Q 038129 77 VRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHHV 115 (118)
Q Consensus 77 ~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~~ 115 (118)
+..+-.|.+++..++.|....+.-++..+.+...|-+.|
T Consensus 6 VDtVYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~v 44 (61)
T 3l4f_A 6 VDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLV 44 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999988888777666665544
No 29
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=43.46 E-value=38 Score=21.32 Aligned_cols=25 Identities=12% Similarity=0.216 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 82 LLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 82 ~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
..-++-+++++.+-.++.+|+.|+.
T Consensus 7 ~iLqERNELKa~vf~lqeEL~yY~~ 31 (65)
T 1yhn_B 7 QILQERNELKAKVFLLKEELAYFQR 31 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445667888999999999999986
No 30
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=41.69 E-value=75 Score=21.10 Aligned_cols=65 Identities=20% Similarity=0.191 Sum_probs=41.5
Q ss_pred hhHHHHHHHhccchhhhhhhCCCchhHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 038129 28 HRFACVHKIYGSSKVGNMLQDLPVELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAE 100 (118)
Q Consensus 28 ~~F~~vhkvFG~sni~k~L~~l~~~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~ 100 (118)
.-+..+||+-|.+..+.. |..+. -+-..|...|..+|+...-..+..|..++..+..++....++
T Consensus 51 ~l~~~aHkLkGaa~~~Ga-----~~L~~---~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~ 115 (119)
T 3myf_A 51 TMLSTIHKLHGASCYCGV-----PTTQR---LCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQ 115 (119)
T ss_dssp HHHHHHHHHHHHHTTTTC-----HHHHH---HHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCH-----HHHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334578999988776553 11221 233457778888887777777777777777766666655444
No 31
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=41.55 E-value=44 Score=22.19 Aligned_cols=65 Identities=11% Similarity=0.123 Sum_probs=36.4
Q ss_pred hhhhhhCCCch------hHHHHHHHHHHHHhhhcc--CCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 42 VGNMLQDLPVE------LRAEAADAICIEAECRVQ--DPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 42 i~k~L~~l~~~------~R~~a~~SL~YEA~~R~~--DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
+-.+|..++.+ ++.-...-=.|-+++|.+ +-+..--.-+..|+.++..+..|++.+..++..|+.
T Consensus 11 LN~~L~gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 11 LNRHLRGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666643 345667777888888875 222333344445555555555555555555555543
No 32
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=41.35 E-value=45 Score=19.99 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 038129 82 LLQQQIHNAESQLVKARAEIAVL 104 (118)
Q Consensus 82 ~Lq~ql~~~~~EL~~~~~~la~~ 104 (118)
.++..|..++++|..++++++..
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q 26 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARL 26 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556665555555543
No 33
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=40.71 E-value=33 Score=24.35 Aligned_cols=52 Identities=12% Similarity=0.006 Sum_probs=29.2
Q ss_pred HHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhh
Q 038129 62 CIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRH 113 (118)
Q Consensus 62 ~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~ 113 (118)
+-|...-..+|+.+-...+..|+.+...++.+|...+.++.......+.|..
T Consensus 124 l~ek~~~l~~~~g~dl~~v~~l~~~h~~~e~dL~~~~~~v~~l~~~a~~L~~ 175 (218)
T 3edu_A 124 IDEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQT 175 (218)
T ss_dssp HHHHHHCCC-------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444568888888889999999999999999999888888776666653
No 34
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=40.10 E-value=39 Score=17.65 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAVL 104 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~~ 104 (118)
|..|.+....++.|++.+.-+++..
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 4567788888888888887777653
No 35
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=40.07 E-value=42 Score=20.39 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhh
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAVLGSHAQELR 112 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~ 112 (118)
+..|+.++..++.+...++.++...+..-+.|.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544444443
No 36
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=39.41 E-value=93 Score=21.50 Aligned_cols=73 Identities=16% Similarity=0.280 Sum_probs=48.0
Q ss_pred CchhHHHHHHHhc------cchhhhhhhCCCchhHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 038129 26 DPHRFACVHKIYG------SSKVGNMLQDLPVELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARA 99 (118)
Q Consensus 26 ~~~~F~~vhkvFG------~sni~k~L~~l~~~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~ 99 (118)
.+..|+...+-+. ...|-.++..||.......- -...|..|+.++..+..||..+-.
T Consensus 51 ~~~~f~~~~~ela~dli~k~kqIe~LIdsLP~~~~see~-----------------Q~~ri~~L~~E~~~~~~el~~~v~ 113 (132)
T 1ykh_B 51 PPEEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEE-----------------QLRKIDMLQKKLVEVEDEKIEAIK 113 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578876666554 56777888888855432211 124577888888888888888777
Q ss_pred HHHHhhchhhhhhhcc
Q 038129 100 EIAVLGSHAQELRHHV 115 (118)
Q Consensus 100 ~la~~~~~~~~~~~~~ 115 (118)
+-.....+-+++++.+
T Consensus 114 e~e~ll~~v~~~l~~i 129 (132)
T 1ykh_B 114 KKEKLMRHVDSMIEDF 129 (132)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7666666655555544
No 37
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=39.39 E-value=59 Score=20.29 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhh
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVLGSHAQELR 112 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~ 112 (118)
-|.+|..-.+.+..||..++.+|...++-+.+|+
T Consensus 28 kiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 28 KVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 4667777777777788888877777776666654
No 38
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=38.66 E-value=55 Score=20.98 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVLG 105 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~~ 105 (118)
-+..++..|..++++|..++.+++...
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~ql 55 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQL 55 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666665443
No 39
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=38.46 E-value=29 Score=20.31 Aligned_cols=24 Identities=4% Similarity=-0.049 Sum_probs=19.7
Q ss_pred CCCcCcHHHHHHHHHHHHHHHHHH
Q 038129 71 DPVYGCVRMISLLQQQIHNAESQL 94 (118)
Q Consensus 71 DPV~Gc~G~I~~Lq~ql~~~~~EL 94 (118)
.-|.|.+|+|...-+++-.+-.+|
T Consensus 19 S~iPGPVG~~asGi~~l~~l~~~l 42 (44)
T 2z2q_B 19 SNIPGPIGVAASGISGLSALFEGF 42 (44)
T ss_pred hcCCCchhHHHHhHHHHHHHHHHh
Confidence 358899999999999988776655
No 40
>1lqb_D HIF-1 alpha, hypoxia-inducible factor 1 alpha; protein-peptide complex, tumor suppressor, cancer, proteosomal degradation, ubiquitin; 2.00A {Homo sapiens}
Probab=37.58 E-value=8.2 Score=21.50 Aligned_cols=13 Identities=38% Similarity=1.007 Sum_probs=10.0
Q ss_pred ccCCCCCCCCchhHH
Q 038129 17 IFAPYFPANDPHRFA 31 (118)
Q Consensus 17 ~laPyFp~~~~~~F~ 31 (118)
++|||.|-| .+|+
T Consensus 13 mLAPYIpMd--dDFq 25 (34)
T 1lqb_D 13 MLAPYIPMD--DDFQ 25 (34)
T ss_pred HhcCccccC--cccc
Confidence 689999966 5565
No 41
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=37.53 E-value=34 Score=17.93 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 038129 82 LLQQQIHNAESQLVKARAEIAVLG 105 (118)
Q Consensus 82 ~Lq~ql~~~~~EL~~~~~~la~~~ 105 (118)
.|.-+...++..++.+++++++.+
T Consensus 4 alefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHhc
Confidence 355555666777777777777654
No 42
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=37.41 E-value=60 Score=20.63 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=21.1
Q ss_pred HHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038129 58 ADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVL 104 (118)
Q Consensus 58 ~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~ 104 (118)
...-+-|+..|.... +..++..|..++++|..++.+++..
T Consensus 13 LE~~l~e~e~~~~~~-------~~~~q~~i~~lE~eL~~~r~e~~~q 52 (84)
T 1gk4_A 13 LERQMREMEENFAVE-------AANYQDTIGRLQDEIQNMKEEMARH 52 (84)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666654433 4455555555555555555555543
No 43
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=37.12 E-value=67 Score=19.89 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhcc
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHHV 115 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~~ 115 (118)
-|..|...+..++.+=..+-.+|.....|+..|-..+
T Consensus 13 kI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L 49 (64)
T 3t97_C 13 KITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLL 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999998888888999999999988876544
No 44
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=36.83 E-value=72 Score=19.50 Aligned_cols=37 Identities=11% Similarity=0.192 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhh
Q 038129 77 VRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRH 113 (118)
Q Consensus 77 ~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~ 113 (118)
|..+..|..|+..++.|...++.-|..-+.....|-+
T Consensus 9 VDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~ 45 (56)
T 2w6b_A 9 VDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEK 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788999999999998888887776655544443
No 45
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=35.33 E-value=35 Score=19.96 Aligned_cols=24 Identities=17% Similarity=0.092 Sum_probs=19.5
Q ss_pred CCCcCcHHHHHHHHHHHHHHHHHH
Q 038129 71 DPVYGCVRMISLLQQQIHNAESQL 94 (118)
Q Consensus 71 DPV~Gc~G~I~~Lq~ql~~~~~EL 94 (118)
.-|.|.+|++...-+++-.+-++|
T Consensus 19 S~iPGPVG~~asGi~gl~~l~~~~ 42 (44)
T 1nov_D 19 STIPGPVGVAATGIKGIIETIGSL 42 (44)
T ss_pred hcCCCchhHHHHhHHHHHHHHHHh
Confidence 358899999999999888776654
No 46
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=35.13 E-value=76 Score=20.51 Aligned_cols=34 Identities=15% Similarity=0.205 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Q 038129 77 VRMISLLQQQIHNAESQLVKARAEIAVLGSHAQE 110 (118)
Q Consensus 77 ~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~ 110 (118)
...|...+.++..++.++..++.++......-..
T Consensus 63 ~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~ 96 (112)
T 1l8d_A 63 EELLSKYHLDLNNSKNTLAKLIDRKSELERELRR 96 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666655544333
No 47
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=34.97 E-value=72 Score=22.00 Aligned_cols=55 Identities=15% Similarity=0.041 Sum_probs=44.0
Q ss_pred HHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhh
Q 038129 59 DAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRH 113 (118)
Q Consensus 59 ~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~ 113 (118)
.+=+.|...-+.|+.||-...|..+..+-..+++||...+..+.......++|+.
T Consensus 69 ~~Wi~ek~~~a~~~~~~d~~~v~~ll~kH~afe~El~a~~~~~~~l~~~g~~Li~ 123 (161)
T 3lbx_A 69 GKWIMEKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFT 123 (161)
T ss_dssp HHHHHHHHHHHHTTSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhhhccCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444566666778888999999999999999999999999988888777666653
No 48
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=34.84 E-value=1.9e+02 Score=23.72 Aligned_cols=83 Identities=14% Similarity=0.205 Sum_probs=59.4
Q ss_pred hhHHHHHHHhccchhhhhhhCCC-chhHHHHHHHHHHHHhhhccCCCcC---cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038129 28 HRFACVHKIYGSSKVGNMLQDLP-VELRAEAADAICIEAECRVQDPVYG---CVRMISLLQQQIHNAESQLVKARAEIAV 103 (118)
Q Consensus 28 ~~F~~vhkvFG~sni~k~L~~l~-~~~R~~a~~SL~YEA~~R~~DPV~G---c~G~I~~Lq~ql~~~~~EL~~~~~~la~ 103 (118)
..|..+.-.||..++-.+-..+. -..-+++- -++.+=+.--+=|.| -++.|-..+.++...+.+...+...++.
T Consensus 132 ~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~--~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L~~Ki~~ 209 (374)
T 2y9y_A 132 RKFITVSGKYGRNSIQAIARELAPGKTLEEVR--AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEALRRKLSE 209 (374)
T ss_dssp HHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH--HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH--HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678899999999999999886 22222222 122222222233444 6888999999999999999999999999
Q ss_pred hhchhhhhh
Q 038129 104 LGSHAQELR 112 (118)
Q Consensus 104 ~~~~~~~~~ 112 (118)
|+.+-++|.
T Consensus 210 y~~P~~~L~ 218 (374)
T 2y9y_A 210 YKNPFFDLK 218 (374)
T ss_dssp CSSHHHHCC
T ss_pred ccCCHHHce
Confidence 998877763
No 49
>2l10_A Talin-1; helical bundle, cytoskeleton, focal adhesion, structu protein; NMR {Mus musculus}
Probab=34.54 E-value=1e+02 Score=22.17 Aligned_cols=61 Identities=20% Similarity=0.172 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhhc-cCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhhhhhhccc
Q 038129 55 AEAADAICIEAECRV-QDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVL-GSHAQELRHHVQ 116 (118)
Q Consensus 55 ~~a~~SL~YEA~~R~-~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~-~~~~~~~~~~~~ 116 (118)
++|+++ |-+|..+. .+++.=..+.+..+|.+|.++.++|..+=.++..- |....+|-++++
T Consensus 11 d~Ai~~-I~~as~~l~~~~~~~~~~~~~~~Q~eL~~aA~~Ln~A~~~vv~aargsp~~La~as~ 73 (158)
T 2l10_A 11 DNALRA-VGDASKRLLSDLLPPSTGTFQEAQSRLNEAAAGLNQAATELVQASRGTPQDLARASG 73 (158)
T ss_dssp HHHHHH-HHHHHHHHTTTCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 455555 34444444 55555555578899999999999999999888865 666666666553
No 50
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=34.30 E-value=47 Score=22.18 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAVLGSHA 108 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~~~~~~ 108 (118)
..+|+.++..++.|+..++.++...+++.
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~~P 37 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRSPP 37 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45788899999999999999999888754
No 51
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=33.96 E-value=89 Score=19.72 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAVL 104 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~~ 104 (118)
...++..|..++++|..++++++..
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~q 31 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQ 31 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666655544
No 52
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=33.81 E-value=71 Score=21.60 Aligned_cols=55 Identities=13% Similarity=0.006 Sum_probs=42.3
Q ss_pred HHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhh
Q 038129 58 ADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELR 112 (118)
Q Consensus 58 ~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~ 112 (118)
+.+-+.|...-..|+.||-...|..+..+...+++||..-+..+.......+.|+
T Consensus 58 l~~Wi~ek~~~~~~~~~~d~~~v~~~l~kH~afe~El~a~~~~l~~v~~~g~~Li 112 (149)
T 3f31_A 58 LEKWIQEKLQIASDENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMI 112 (149)
T ss_dssp HHHHHHHHHHHTTSCSSCSSSCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666678899998888999999999999999988887777766555554
No 53
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=32.95 E-value=47 Score=23.98 Aligned_cols=44 Identities=16% Similarity=0.052 Sum_probs=33.4
Q ss_pred CCCCCCC---CchhHHHHHHHhcc---chhhhhhhCCCchhHHHHHHHHH
Q 038129 19 APYFPAN---DPHRFACVHKIYGS---SKVGNMLQDLPVELRAEAADAIC 62 (118)
Q Consensus 19 aPyFp~~---~~~~F~~vhkvFG~---sni~k~L~~l~~~~R~~a~~SL~ 62 (118)
+||-..+ +...+..|++|... +-|.++++.|++++.+-.|+-|+
T Consensus 62 pP~~~k~q~~K~~~~~~Vl~VL~siK~sdI~~~v~~L~~e~~D~LMKYiY 111 (151)
T 1k8k_G 62 PPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIY 111 (151)
T ss_dssp CCSSCSCHHHHHHHHHHHHHHHHHSCGGGHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHHhChhhhhHHHHHHH
Confidence 5666666 34556677777554 67999999999999999999765
No 54
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=32.23 E-value=84 Score=21.22 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhh
Q 038129 78 RMISLLQQQIHNAESQLVKARAEIAVLGSHAQELR 112 (118)
Q Consensus 78 G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~ 112 (118)
+.|..|.+||..+..|-+.+..++...+.....+.
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk 54 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 54 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999998888888888877777776655554
No 55
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=32.22 E-value=1.4e+02 Score=21.25 Aligned_cols=72 Identities=18% Similarity=0.284 Sum_probs=44.0
Q ss_pred CchhHHHHHHHhc------cchhhhhhhCCCchhHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 038129 26 DPHRFACVHKIYG------SSKVGNMLQDLPVELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARA 99 (118)
Q Consensus 26 ~~~~F~~vhkvFG------~sni~k~L~~l~~~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~ 99 (118)
.+..|+..-+-+. ...|-.++..||.....+.- -...|..|+.++..+..||..+-.
T Consensus 51 ~~~~f~~~~~ela~dli~kakqIe~LIdsLPg~~~seee-----------------Q~~ri~~Le~E~~~~~~el~~~v~ 113 (151)
T 1yke_B 51 PPEEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEE-----------------QLRKIDMLQKKLVEVEDEKIEAIK 113 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSCHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567876655554 56777888888854422211 123467788888887777777766
Q ss_pred HHHHhhchhhhhhhc
Q 038129 100 EIAVLGSHAQELRHH 114 (118)
Q Consensus 100 ~la~~~~~~~~~~~~ 114 (118)
+-.....+-++++..
T Consensus 114 eae~ll~~v~~~l~~ 128 (151)
T 1yke_B 114 KKEKLLRHVDSLIED 128 (151)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 655555544444443
No 56
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=32.03 E-value=84 Score=20.16 Aligned_cols=31 Identities=16% Similarity=-0.004 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 038129 77 VRMISLLQQQIHNAESQLVKARAEIAVLGSH 107 (118)
Q Consensus 77 ~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~ 107 (118)
+-.|..|+.+...+..++..++.+....+.+
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~r 81 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHK 81 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655555555444444433
No 57
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=31.53 E-value=97 Score=19.39 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVLGSHAQEL 111 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~ 111 (118)
.|..|+.++..++.+...+.++....+.+-..|
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666655555555555555555444433
No 58
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=31.42 E-value=18 Score=27.34 Aligned_cols=55 Identities=24% Similarity=0.247 Sum_probs=33.2
Q ss_pred CchhchHhh-----hCCCCC--CccCCCCCCCCchhHHHHHHHhccchhhhhhhCCCchhHHHHHHHH
Q 038129 1 RCAACRHLR-----RRCPSD--CIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADAI 61 (118)
Q Consensus 1 ~CaaCk~~R-----r~C~~~--C~laPyFp~~~~~~F~~vhkvFG~sni~k~L~~l~~~~R~~a~~SL 61 (118)
.|+.|.|.- .+|.++ |+..+|=+.. .+|.+.+ ..-+..++++-.++-|..+++.|
T Consensus 13 ~c~~c~~~~~~~~~~~c~~~~~c~~~~~~~ri--~~~~~~~----p~l~~~ll~d~~~~VR~~AA~~l 74 (244)
T 1lrv_A 13 DCRVCSFRMSLLLTGRCTPGDACVAVESGRQI--DRFFRNN----PHLAVQYLADPFWERRAIAVRYS 74 (244)
T ss_dssp CTTTSTTTTTTGGGTSSBTTTBCSSSSCHHHH--HHHHHHC----GGGGGGGTTCSSHHHHHHHHTTS
T ss_pred cccCCCCcccchhcCCCCCCchHhhcCcHHHH--HHHHcCC----HHHHHHHhcCCCHHHHHHHHHhC
Confidence 499999998 789988 9998874322 2232211 12233444555566666666654
No 59
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=31.35 E-value=54 Score=24.13 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhcc
Q 038129 78 RMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHHV 115 (118)
Q Consensus 78 G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~~ 115 (118)
-.|..|+..+..++.||..++..+..-.....+|.+.|
T Consensus 90 e~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl 127 (168)
T 3o0z_A 90 EMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDML 127 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666665555555554443
No 60
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=31.09 E-value=79 Score=19.41 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhcc
Q 038129 82 LLQQQIHNAESQLVKARAEIAVLGSHAQELRHHV 115 (118)
Q Consensus 82 ~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~~ 115 (118)
.|..++++...+|...-.+|..-+.....|++++
T Consensus 21 ~L~~~lE~~~~~Lee~t~~L~~EK~ktd~LL~~m 54 (66)
T 3hls_A 21 KLTQELEMLTDRLQLTLRALEDEKKKTDTLLYSV 54 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4667777788888888888888888888888764
No 61
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=30.15 E-value=49 Score=21.74 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAV 103 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~ 103 (118)
++..|+.++.+++.+|..++..+..
T Consensus 3 ~~e~l~~~~~~l~~~l~~~~~~~~~ 27 (148)
T 3pbf_A 3 LDEELQTELYEIKHQILQTMGVLSL 27 (148)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999888843
No 62
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=30.11 E-value=65 Score=21.10 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038129 79 MISLLQQQIHNAESQLVKARAEI 101 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~l 101 (118)
-|..|++++..-.+|+..++.+|
T Consensus 55 El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 55 EVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444444444444444444443
No 63
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=30.04 E-value=1.1e+02 Score=19.65 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhccc
Q 038129 76 CVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHHVQ 116 (118)
Q Consensus 76 c~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~~~ 116 (118)
=++++..-...|..++.+...+..++...+.++++|...++
T Consensus 43 K~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 43 KVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888999999999999999888888888887664
No 64
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=29.64 E-value=43 Score=22.95 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038129 79 MISLLQQQIHNAESQLVKARA 99 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~ 99 (118)
.|..|+.++..++.+|..+++
T Consensus 24 ~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 24 KLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344444555555555544443
No 65
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=29.30 E-value=78 Score=20.82 Aligned_cols=29 Identities=17% Similarity=0.088 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038129 77 VRMISLLQQQIHNAESQLVKARAEIAVLG 105 (118)
Q Consensus 77 ~G~I~~Lq~ql~~~~~EL~~~~~~la~~~ 105 (118)
=.-|..|+..+..++.+|..++..|....
T Consensus 43 E~Ei~sL~kk~~~lE~eld~~ee~L~ea~ 71 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQVLEELHKSE 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577788888888888888877776554
No 66
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=29.27 E-value=65 Score=24.22 Aligned_cols=27 Identities=11% Similarity=0.329 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhch
Q 038129 81 SLLQQQIHNAESQLVKARAEIAVLGSH 107 (118)
Q Consensus 81 ~~Lq~ql~~~~~EL~~~~~~la~~~~~ 107 (118)
..|.+|+.....|+..++.+|+..+.+
T Consensus 30 ~~L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 30 FVLSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555555555555555555443
No 67
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=28.60 E-value=87 Score=19.61 Aligned_cols=49 Identities=27% Similarity=0.184 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038129 53 LRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLG 105 (118)
Q Consensus 53 ~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~ 105 (118)
.|.+....-+=+++-|.. -.-.-|..|+..+..++.+|..+...|....
T Consensus 20 ~~~~~~e~~l~~~e~~~~----~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSK----QLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444431 1235577788888888888887777766543
No 68
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=28.35 E-value=34 Score=22.22 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=15.4
Q ss_pred hhhhhhCCCchhHHHHHHH
Q 038129 42 VGNMLQDLPVELRAEAADA 60 (118)
Q Consensus 42 i~k~L~~l~~~~R~~a~~S 60 (118)
++++|+++++.+|...+++
T Consensus 41 vTnlln~V~~~qR~~iAe~ 59 (76)
T 2jr2_A 41 VTNIIAQVPESKRVAVVDN 59 (76)
T ss_dssp HHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 5667779999999888776
No 69
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=28.07 E-value=90 Score=21.86 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAVLGSHAQEL 111 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~ 111 (118)
|..|+.+|..+..+|..+-+++...|...+.+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 44444444444444444444444444444433
No 70
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=27.95 E-value=61 Score=20.96 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVLG 105 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~~ 105 (118)
-|..|+.+|..+.-++.....+|...+
T Consensus 28 Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~ 54 (83)
T 2xdj_A 28 QLSDNQSDIDSLRGQIQENQYQLNQVV 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 71
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=27.95 E-value=79 Score=21.13 Aligned_cols=37 Identities=8% Similarity=0.030 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhh
Q 038129 76 CVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELR 112 (118)
Q Consensus 76 c~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~ 112 (118)
=+.---.|.+++..+.+||+.++.+|...+..=+-.+
T Consensus 47 eFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~ 83 (93)
T 3sjb_C 47 NYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHL 83 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566678999999999999999999988777554443
No 72
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=27.27 E-value=97 Score=18.45 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038129 80 ISLLQQQIHNAESQLVKARAEIA 102 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la 102 (118)
|..|..++.++..++..++.++.
T Consensus 13 V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 13 AQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555554444444443
No 73
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=26.50 E-value=1.9e+02 Score=21.22 Aligned_cols=50 Identities=12% Similarity=0.137 Sum_probs=39.5
Q ss_pred HHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhh
Q 038129 64 EAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRH 113 (118)
Q Consensus 64 EA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~ 113 (118)
|...-..+|+.+-...+..++.+...++.+|...+..+.......+.|..
T Consensus 131 ~k~~~l~~~~~~d~~~v~~l~~~h~~~~~~l~~~~~~v~~l~~~a~~L~~ 180 (323)
T 3edv_A 131 DKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQA 180 (323)
T ss_dssp HHHHTCCCCCCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444458888889999999999999999999998888877776666654
No 74
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=26.41 E-value=1e+02 Score=21.09 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 77 VRMISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 77 ~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
.+-|..||..+...+.+|..++.+|..-..
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~ 63 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEK 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999888875433
No 75
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=25.99 E-value=1.3e+02 Score=18.98 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhccc
Q 038129 77 VRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHHVQ 116 (118)
Q Consensus 77 ~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~~~ 116 (118)
++++..-...|..++.+...+..++...+.+...|...+.
T Consensus 39 ~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 39 LSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999988888876654
No 76
>2p9x_A Hypothetical protein PH0832; pyrococcus horikoshii OT3, NPPSFA, national project on prote structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=25.99 E-value=22 Score=24.14 Aligned_cols=15 Identities=40% Similarity=1.035 Sum_probs=13.0
Q ss_pred CCchhHH-HHHHHhcc
Q 038129 25 NDPHRFA-CVHKIYGS 39 (118)
Q Consensus 25 ~~~~~F~-~vhkvFG~ 39 (118)
++|++|- .|.++||.
T Consensus 44 eDP~kFkeaV~~LFGE 59 (99)
T 2p9x_A 44 DDPQKFKEAVSKLFGE 59 (99)
T ss_dssp HCHHHHHHHHHHHHCH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 5799997 79999996
No 77
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=25.90 E-value=1.1e+02 Score=20.72 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=19.8
Q ss_pred HHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038129 58 ADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVL 104 (118)
Q Consensus 58 ~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~ 104 (118)
...-+-|+..|..- -+..++..|..++++|..++.+++..
T Consensus 62 LE~~l~e~e~~~~~-------~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 62 LQNAIADAEQRGEL-------ALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444455555332 34445555555555555555555443
No 78
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=25.39 E-value=32 Score=22.82 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAV 103 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~ 103 (118)
|-.||..|..++++++.++++|..
T Consensus 60 ViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 60 VIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567999999999999999888864
No 79
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=25.28 E-value=1.3e+02 Score=18.69 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=28.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhcc
Q 038129 76 CVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHHV 115 (118)
Q Consensus 76 c~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~~ 115 (118)
=+.++..--..|..++.++..++.++...+.+...|...+
T Consensus 38 K~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 38 RAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666667777777777777777777777777666554
No 80
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=24.96 E-value=1.2e+02 Score=19.83 Aligned_cols=38 Identities=11% Similarity=0.087 Sum_probs=17.1
Q ss_pred HHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038129 58 ADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIA 102 (118)
Q Consensus 58 ~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la 102 (118)
...-+-|.+.|...- +..++..|..++++|..++.+++
T Consensus 24 LE~~l~e~E~~~~~e-------~~~~q~~i~~lE~eL~~~r~e~~ 61 (95)
T 3mov_A 24 CLERIQELEDLLAKE-------KDNSRRMLTDKEREMAEIRDQMQ 61 (95)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555544333 33344444444444444444444
No 81
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=24.96 E-value=1e+02 Score=23.59 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhh
Q 038129 81 SLLQQQIHNAESQLVKARAEIAVLGSHAQELR 112 (118)
Q Consensus 81 ~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~ 112 (118)
...+.+.+...++|+..+.++|..|.+++.+.
T Consensus 188 ~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~ 219 (228)
T 3q0x_A 188 SRTRDDRDSMVAQLAQCRQQLAQLREQYDKHL 219 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444444444445555555554444444433
No 82
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=24.87 E-value=39 Score=20.05 Aligned_cols=15 Identities=27% Similarity=0.984 Sum_probs=11.9
Q ss_pred CchhchHhhhCCCCC
Q 038129 1 RCAACRHLRRRCPSD 15 (118)
Q Consensus 1 ~CaaCk~~Rr~C~~~ 15 (118)
+|..|+-.+-+|...
T Consensus 5 AC~~Cr~rK~kCd~~ 19 (72)
T 2er8_A 5 ACVECRQQKSKCDAH 19 (72)
T ss_dssp CCHHHHHTTCCCCSG
T ss_pred hhHHHHhcccCCCCC
Confidence 588898888888753
No 83
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=24.68 E-value=1e+02 Score=19.63 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=27.0
Q ss_pred HHHHHhccchhhhhhhCCC-chhHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHH
Q 038129 32 CVHKIYGSSKVGNMLQDLP-VELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKA 97 (118)
Q Consensus 32 ~vhkvFG~sni~k~L~~l~-~~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~ 97 (118)
+++.+|--.+.-.+.+.|. ...+.+-+++|+.|+++= ...|..|+..++.||...
T Consensus 7 ~~~~w~~~~s~eel~~~L~~~~k~~~Hl~~LL~EsEat-----------narL~eq~~lLK~EIRRl 62 (71)
T 3bbp_D 7 EPPLWHAEFTKEELVQKLSSTTKSADHLNGLLRETEAT-----------NAILMEQIKLLKSEIRRL 62 (71)
T ss_dssp ----------------------CTTSHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
T ss_pred CcchhhccCCHHHHHHHHHHHHHHHHHHHHHHHhccch-----------HHHHHHHHHHHHHHHHHH
Confidence 4455555556666666665 446788899999998763 234888888888888765
No 84
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=24.64 E-value=1e+02 Score=20.24 Aligned_cols=21 Identities=43% Similarity=0.455 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038129 80 ISLLQQQIHNAESQLVKARAE 100 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~ 100 (118)
|..|+.++.+++.++..+.++
T Consensus 10 i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 10 VHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554443
No 85
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.51 E-value=1.2e+02 Score=20.61 Aligned_cols=41 Identities=22% Similarity=0.230 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038129 57 AADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVL 104 (118)
Q Consensus 57 a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~ 104 (118)
....-+-|+..|..- -+..++..|..++++|..++.+++..
T Consensus 63 sLE~~l~e~e~~~~~-------~l~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 63 SLENSLEETKGRYCM-------QLAQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555332 34455555555555555555555443
No 86
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=24.43 E-value=1.8e+02 Score=20.08 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=35.9
Q ss_pred cCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhh
Q 038129 70 QDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRH 113 (118)
Q Consensus 70 ~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~ 113 (118)
..|+.+-...+..|..+...++.||...+..+.......++|+.
T Consensus 134 ~~~~g~dl~~v~~ll~kh~~~~~el~~~~~~i~~l~~~g~~L~~ 177 (216)
T 1u5p_A 134 SEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSD 177 (216)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 45677789999999999999999999988888777776666653
No 87
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=24.37 E-value=1.6e+02 Score=19.46 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Q 038129 76 CVRMISLLQQQIHNAESQLVKARAEIAVLGSHAQEL 111 (118)
Q Consensus 76 c~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~ 111 (118)
--..|..-++++.++.++|+.++.+++.|..-...+
T Consensus 53 NpaeIA~~~~~L~qAraDL~~l~r~~av~g~E~RRI 88 (90)
T 4b6x_A 53 NPAEIANTSQQLRHARADLADLQRRFAVLRNEDRRI 88 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 346788889999999999999999999987665543
No 88
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=24.29 E-value=18 Score=20.18 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAV 103 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~ 103 (118)
|..++..+..++.++..++.+++.
T Consensus 6 i~avKkKiq~lq~q~d~aee~~~~ 29 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNYHLENEVAR 29 (37)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544443
No 89
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=23.96 E-value=1.6e+02 Score=19.38 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVLGSHAQEL 111 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~ 111 (118)
.+..|+.+...+..|+..++.+++....--+.+
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~ 81 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDAY 81 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777766665444433
No 90
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=23.95 E-value=1.1e+02 Score=20.31 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 82 LLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 82 ~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
.|..++.+++.++..+..++...+.
T Consensus 5 ~l~~~~q~l~~~~~~l~~~~~~l~~ 29 (133)
T 1fxk_C 5 EIVAQLNIYQSQVELIQQQMEAVRA 29 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 91
>3cxj_A Uncharacterized protein; PSI-II, structural genomics structure initiative; 2.80A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=23.48 E-value=43 Score=24.54 Aligned_cols=28 Identities=14% Similarity=-0.019 Sum_probs=23.7
Q ss_pred hhhhhCCCchhHHHHHHHHHHHHhhhcc
Q 038129 43 GNMLQDLPVELRAEAADAICIEAECRVQ 70 (118)
Q Consensus 43 ~k~L~~l~~~~R~~a~~SL~YEA~~R~~ 70 (118)
.+.|.++++++|...+.+|.|+....-.
T Consensus 66 ~~~L~~l~~~eR~~fl~~i~~~Ll~~~v 93 (165)
T 3cxj_A 66 QAGIRALSMEKRTEFIWKVRFTLNRFGV 93 (165)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 3678899999999999999999876543
No 92
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=23.17 E-value=77 Score=24.03 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=21.6
Q ss_pred hhhhhhhCCCc--hhHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 41 KVGNMLQDLPV--ELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 41 ni~k~L~~l~~--~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
.|...|++=|. .++++.+.+| ++-.|.. |.|+-..+|+..+.+++..++.+|...-.
T Consensus 35 ~V~~yL~~~PdFf~~~~~Ll~~L------~lph~~~---~aVSL~erQ~~~LR~r~~~Le~~L~~Li~ 93 (252)
T 3e98_A 35 QVAAYLSQHPEFFVEHDELIPEL------RIPHQPG---DAVSLVERQVRLLRERNIEMRHRLSQLMD 93 (252)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHhhCHHHHHhC------CCCCCCC---CcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555442 4556666554 5566653 77888899999998888888888765433
No 93
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.00 E-value=89 Score=16.13 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038129 81 SLLQQQIHNAESQLVKARAEIA 102 (118)
Q Consensus 81 ~~Lq~ql~~~~~EL~~~~~~la 102 (118)
-.|..+++.+++.|.+++.+|-
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3566778888888888877663
No 94
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=22.30 E-value=27 Score=23.49 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhh
Q 038129 77 VRMISLLQQQIHNAESQLVKARAEIAVLGSHAQELRH 113 (118)
Q Consensus 77 ~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~ 113 (118)
+.---.|..++..+.+||+.++++|...+..-.-++.
T Consensus 55 FAKWAKL~Rk~DKl~~ele~l~~~L~s~ks~fd~~l~ 91 (94)
T 3vlc_E 55 YAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHLH 91 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHTTTTHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677788888888888887777766665544443
No 95
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=22.17 E-value=79 Score=23.75 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhcc
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAVLGSHAQELRHHV 115 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~~~~~ 115 (118)
+...+.+|..++.+|++++++...+..+..+-.|++
T Consensus 36 l~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i 71 (190)
T 4emc_A 36 LDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENS 71 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 446677777777777777777777666655555544
No 96
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=22.01 E-value=1e+02 Score=16.46 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038129 78 RMISLLQQQIHNAESQLVKARAE 100 (118)
Q Consensus 78 G~I~~Lq~ql~~~~~EL~~~~~~ 100 (118)
|.||.|..+.-..-+||-++..+
T Consensus 4 geiwklheeflkkfeellklhee 26 (32)
T 1m3w_A 4 GEIWKLHEEFLKKFEELLKLHEE 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 78999998877666777666543
No 97
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=21.98 E-value=1.2e+02 Score=27.50 Aligned_cols=55 Identities=9% Similarity=0.131 Sum_probs=39.5
Q ss_pred hhhhhCCCchhHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 038129 43 GNMLQDLPVELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAE 100 (118)
Q Consensus 43 ~k~L~~l~~~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~ 100 (118)
.+.+.+|+|++=..++++++||.. +...|.. .+.+.....++..+..+|..++.+
T Consensus 862 ~g~~~~l~p~~~aa~~s~~v~~~~-~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~ 916 (1010)
T 2xgj_A 862 NGNFNELKPEQAAALLSCFAFQER-CKEAPRL--KPELAEPLKAMREIAAKIAKIMKD 916 (1010)
T ss_dssp HTTTTTCCHHHHHHHHHHHHCCCC-CSCCCCC--CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccCCCCHHHHHHHHeeeEeecC-CCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345679999999999999999985 2233432 266666777777777777777654
No 98
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=21.96 E-value=1.4e+02 Score=18.99 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 79 MISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 79 ~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
-+..|..+...|+.++..++.++..++.
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777777766654
No 99
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=21.80 E-value=3e+02 Score=21.74 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=57.2
Q ss_pred chhHHHHHHHhccchhhhhhhCCCchhHHHH--HHHHHHHHhhhccCCCcC---cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038129 27 PHRFACVHKIYGSSKVGNMLQDLPVELRAEA--ADAICIEAECRVQDPVYG---CVRMISLLQQQIHNAESQLVKARAEI 101 (118)
Q Consensus 27 ~~~F~~vhkvFG~sni~k~L~~l~~~~R~~a--~~SL~YEA~~R~~DPV~G---c~G~I~~Lq~ql~~~~~EL~~~~~~l 101 (118)
-..|.++.--||..++-++-..++-..-+++ -..+.||=. +=|.| -++.|-..+..+...+.+-..+...+
T Consensus 118 f~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry----~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~~Ki 193 (304)
T 1ofc_X 118 FNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC----TELQDIERIMGQIERGEGKIQRRLSIKKALDQKM 193 (304)
T ss_dssp HHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG----GGCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH----HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667789999999999999888863333332 222333321 22444 35777788888888888888899999
Q ss_pred HHhhchhhhhh
Q 038129 102 AVLGSHAQELR 112 (118)
Q Consensus 102 a~~~~~~~~~~ 112 (118)
+.|+.+-++|.
T Consensus 194 ~~~~~P~~~L~ 204 (304)
T 1ofc_X 194 SRYRAPFHQLR 204 (304)
T ss_dssp HTCSSHHHHCC
T ss_pred HHhcCcHHHhc
Confidence 99998876653
No 100
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=21.80 E-value=1.2e+02 Score=19.87 Aligned_cols=22 Identities=5% Similarity=0.095 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHhhchhhhh
Q 038129 90 AESQLVKARAEIAVLGSHAQEL 111 (118)
Q Consensus 90 ~~~EL~~~~~~la~~~~~~~~~ 111 (118)
++..+-.+..+|..+....+.|
T Consensus 36 vr~~ni~~eskL~eae~rn~eL 57 (81)
T 1wt6_A 36 IRTDNQNFASQLREAEARNRDL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 101
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.74 E-value=1.3e+02 Score=21.00 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=19.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038129 76 CVRMISLLQQQIHNAESQLVKARAEIA 102 (118)
Q Consensus 76 c~G~I~~Lq~ql~~~~~EL~~~~~~la 102 (118)
--|-|-.|.++|..+.+|+..++.+..
T Consensus 76 LqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 76 LEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 457777777777777777777766654
No 102
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=21.57 E-value=1.5e+02 Score=21.93 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=34.6
Q ss_pred chhHHHHHHHHHHHHhhhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 51 VELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 51 ~~~R~~a~~SL~YEA~~R~~DPV~Gc~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
.+.|.++++-|+=. |...+..|+..++.++.+|...+.+-...+.
T Consensus 119 a~~paE~ireli~~-----------AertV~kLqkeiD~LEDeL~~eKek~k~i~~ 163 (175)
T 3mud_A 119 VENPAEVIRELICY-----------CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQ 163 (175)
T ss_dssp CSCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888887765 4567899999999999999888876555443
No 103
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=21.54 E-value=1.2e+02 Score=19.59 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 78 RMISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 78 G~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
.--..|..+|.+.+.|++.++.+...++.
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888877555443
No 104
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=21.43 E-value=92 Score=22.47 Aligned_cols=44 Identities=9% Similarity=0.180 Sum_probs=33.1
Q ss_pred CCCCCCCC---chhHHHHHHHhcc---chhhhhhhCCCchhHHHHHHHHH
Q 038129 19 APYFPAND---PHRFACVHKIYGS---SKVGNMLQDLPVELRAEAADAIC 62 (118)
Q Consensus 19 aPyFp~~~---~~~F~~vhkvFG~---sni~k~L~~l~~~~R~~a~~SL~ 62 (118)
+||-..++ ...+..|.+|+.. +-|.++++.|.+++.+-.|+-|+
T Consensus 63 pP~~~~~~~~K~~~~~~Vl~vL~siK~sdI~~~v~~L~~~~~D~LMKYiY 112 (152)
T 3dwl_G 63 VPYGNDVQEVRTQYLNAFVDVLSNIRAADIPAFVKECSTEEIDNIVNFIY 112 (152)
T ss_dssp CCCSCSCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHccHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 46665533 3456678887765 55999999999999999998765
No 105
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=21.13 E-value=1.5e+02 Score=19.43 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038129 77 VRMISLLQQQIHNAESQLVKARAEIAVLGS 106 (118)
Q Consensus 77 ~G~I~~Lq~ql~~~~~EL~~~~~~la~~~~ 106 (118)
..--..|..+|..++.|++..+.++...+.
T Consensus 45 L~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777888888888777777665543
No 106
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=21.11 E-value=58 Score=26.88 Aligned_cols=68 Identities=12% Similarity=0.152 Sum_probs=44.2
Q ss_pred hhHHHHHHHhccchhhhhhh---CCCchhHHHHHHHHHHHHh----hhccCCCcCcHHH------------------HHH
Q 038129 28 HRFACVHKIYGSSKVGNMLQ---DLPVELRAEAADAICIEAE----CRVQDPVYGCVRM------------------ISL 82 (118)
Q Consensus 28 ~~F~~vhkvFG~sni~k~L~---~l~~~~R~~a~~SL~YEA~----~R~~DPV~Gc~G~------------------I~~ 82 (118)
+.+..+++.|+..+-.=+++ ++.++.+.+-..-+|++.+ +++.-|+.||+-. +..
T Consensus 144 e~~~~l~~~~~~~w~~i~~qa~~q~~~~k~r~k~~r~v~~~qe~a~w~vhrp~pg~~~~~e~~~~~~~~~~~~~~~~~~~ 223 (424)
T 2pbi_A 144 ENYDFLNKKINYKWDFVIMQAKEQYRTGKERNKADRYALDCQEKAYWLVHRSPPGMNNVLDYGLDRVTNPNEVKKQTVTA 223 (424)
T ss_dssp HHHHHHHHHTGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHSCCTTSCCTTCCCSCBSSCTTCCCCCCHHH
T ss_pred HHHhhhhhhhcCchHHHHHHHHHHHhhhhccchhhhhhhhhhhhhhhhhhCCCCCCccccccccccccCccccccccHHH
Confidence 44556677776655555554 3445555556666776655 7889999998743 456
Q ss_pred HHHHHHHHHHHHH
Q 038129 83 LQQQIHNAESQLV 95 (118)
Q Consensus 83 Lq~ql~~~~~EL~ 95 (118)
++.++.+++.|+.
T Consensus 224 ~r~~veqLk~~l~ 236 (424)
T 2pbi_A 224 VRKEIMYYQQALM 236 (424)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777763
No 107
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=21.00 E-value=72 Score=20.62 Aligned_cols=26 Identities=15% Similarity=0.205 Sum_probs=21.1
Q ss_pred hhhhhhhCCCchhHHHHHHHHHHHHh
Q 038129 41 KVGNMLQDLPVELRAEAADAICIEAE 66 (118)
Q Consensus 41 ni~k~L~~l~~~~R~~a~~SL~YEA~ 66 (118)
.+.+++-++++++|..++|.|+-+-.
T Consensus 34 ~L~~~~p~~~~~~r~~aIN~LL~~gk 59 (81)
T 2dk8_A 34 VIQNEMPHIEAQQRAVAINRLLSMGQ 59 (81)
T ss_dssp HHHHHCTTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 36677778899999999999987643
No 108
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=20.82 E-value=85 Score=20.16 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Q 038129 80 ISLLQQQIHNAESQLVKARAEIAVLGSHAQEL 111 (118)
Q Consensus 80 I~~Lq~ql~~~~~EL~~~~~~la~~~~~~~~~ 111 (118)
|..|++||..+..+-+.+..++...+.....+
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edf 33 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRL 33 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 45677888777777777777776666554444
No 109
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=20.70 E-value=1.1e+02 Score=19.79 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038129 77 VRMISLLQQQIHNAESQLVKARAEIAVLG 105 (118)
Q Consensus 77 ~G~I~~Lq~ql~~~~~EL~~~~~~la~~~ 105 (118)
.+-|-.|+..+...+.+|..++.+|..-.
T Consensus 4 M~~l~eLq~e~~~~E~QL~~A~QKLkdA~ 32 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKDAE 32 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999988886543
No 110
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=20.45 E-value=1.5e+02 Score=20.04 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038129 78 RMISLLQQQIHNAESQLVKARAEIA 102 (118)
Q Consensus 78 G~I~~Lq~ql~~~~~EL~~~~~~la 102 (118)
..+..|+.++..++.+|..+++.|.
T Consensus 16 ~~~~~l~~~~~~l~~~l~~~~~~l~ 40 (182)
T 3kqg_A 16 EKASALNTKIRALQGSLENMSKLLK 40 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666665544
No 111
>1ef1_C Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.137.5.1
Probab=20.42 E-value=35 Score=22.67 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038129 81 SLLQQQIHNAESQLVKAR 98 (118)
Q Consensus 81 ~~Lq~ql~~~~~EL~~~~ 98 (118)
..|++||..++.||+.++
T Consensus 29 k~lq~QL~~Lk~ELe~lk 46 (90)
T 1ef1_C 29 ERVQKHLKALTSELANAR 46 (90)
T ss_dssp HHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456666666666666553
No 112
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=20.08 E-value=1.4e+02 Score=20.13 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038129 78 RMISLLQQQIHNAESQLVKARAEIAVLG 105 (118)
Q Consensus 78 G~I~~Lq~ql~~~~~EL~~~~~~la~~~ 105 (118)
+-|-.||..+...+.+|..++..|..-.
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLkdA~ 32 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAE 32 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888899999999988888876543
No 113
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=20.05 E-value=1.5e+02 Score=21.99 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038129 76 CVRMISLLQQQIHNAESQLVKARAEIAVLG 105 (118)
Q Consensus 76 c~G~I~~Lq~ql~~~~~EL~~~~~~la~~~ 105 (118)
|.+.+..|+.++.+++.|...++.+.....
T Consensus 150 ~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l 179 (184)
T 3w03_C 150 CLDTIAENQAKNEHLQKENERLLRDWNDVQ 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777777777665443
Done!