BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038130
         (526 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
          Length = 176

 Score = 92.0 bits (227), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 69/118 (58%), Gaps = 2/118 (1%)

Query: 15  DVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGN-DLKRGDEISQSLGDAVEVSSI-YII 72
           DVFLSF+G DTR NF S LY  L ++ I TF  + +L+ G   S  L   +EVS    ++
Sbjct: 10  DVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVV 69

Query: 73  FSESDASSSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEER 130
            SE+ A+SSWCLDEL+ I++        V+ + Y VEP+HVR Q G   + F K   R
Sbjct: 70  VSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR 127


>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
           Resistance Protein L6
 pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
           Resistance Protein L6
          Length = 204

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 3/120 (2%)

Query: 15  DVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGND-LKRGDEISQSLGDAVEVSSIYI-I 72
           +VFLSF+G DTR+ FT  LY +L +  I TF  +D L +G EI  +L  A++ S IY+ I
Sbjct: 37  EVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPI 96

Query: 73  FSESDASSSWCLDELLKIVECR-TNYGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEERF 131
            S   A S WCL EL +IV  +  +  +I++ + Y V+PS VR Q G ++ +F K   +F
Sbjct: 97  ISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF 156


>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 33.9 bits (76), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 37/113 (32%), Gaps = 1/113 (0%)

Query: 240 EYVSLNSLPAEIXXXXXXXXXXXXGCSKLKRLPEFSSSGKIEEIWLDG-TAIEELPSSIG 298
           E+  + SLPA I                    P      K+EE+ L G TA+   P   G
Sbjct: 191 EWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250

Query: 299 CLSRLLYLYLSDCXXXXXXXXXXXXXXXXXXXXXHGCSNLQRLPDDFGNLEAS 351
             + L  L L DC                      GC NL RLP     L A+
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303


>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
           Novel E3 Ligase
          Length = 622

 Score = 30.0 bits (66), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 409 LTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNL 449
           LTSL +   G+L L  S+ +N   R+PES+I LS    +NL
Sbjct: 253 LTSLPMLPSGLLSL--SVYRNQLTRLPESLIHLSSETTVNL 291


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,019,305
Number of Sequences: 62578
Number of extensions: 529964
Number of successful extensions: 1150
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1146
Number of HSP's gapped (non-prelim): 8
length of query: 526
length of database: 14,973,337
effective HSP length: 103
effective length of query: 423
effective length of database: 8,527,803
effective search space: 3607260669
effective search space used: 3607260669
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)