Query 038130
Match_columns 526
No_of_seqs 458 out of 3685
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 07:54:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038130hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 8.8E-45 1.9E-49 410.3 39.0 460 1-479 1-841 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 1.4E-48 3.1E-53 419.4 -2.9 425 18-480 315-787 (889)
3 PLN03210 Resistant to P. syrin 100.0 5.2E-33 1.1E-37 314.7 13.5 453 12-501 344-948 (1153)
4 PLN00113 leucine-rich repeat r 99.9 1.3E-21 2.8E-26 221.5 18.5 150 230-382 92-243 (968)
5 PLN00113 leucine-rich repeat r 99.9 3.2E-21 6.9E-26 218.4 17.2 258 232-495 141-440 (968)
6 KOG0444 Cytoskeletal regulator 99.8 9.5E-22 2.1E-26 194.0 0.8 260 220-498 95-377 (1255)
7 KOG4194 Membrane glycoprotein 99.7 2.7E-18 5.8E-23 168.7 5.2 251 231-495 149-428 (873)
8 KOG0444 Cytoskeletal regulator 99.7 7.3E-19 1.6E-23 173.8 -2.4 262 232-500 56-356 (1255)
9 KOG0472 Leucine-rich repeat pr 99.7 2.9E-18 6.4E-23 161.5 0.5 113 232-348 184-297 (565)
10 KOG4194 Membrane glycoprotein 99.7 1.6E-16 3.5E-21 156.4 7.9 247 233-493 80-351 (873)
11 PLN03194 putative disease resi 99.6 1.4E-15 3E-20 130.9 11.7 107 6-116 19-127 (187)
12 KOG0472 Leucine-rich repeat pr 99.6 5.4E-18 1.2E-22 159.7 -4.5 245 233-495 47-309 (565)
13 PRK15387 E3 ubiquitin-protein 99.6 1.6E-14 3.5E-19 153.6 16.7 227 233-496 203-458 (788)
14 KOG0617 Ras suppressor protein 99.6 5.2E-17 1.1E-21 136.0 -2.2 165 246-460 25-190 (264)
15 PRK15370 E3 ubiquitin-protein 99.6 1.5E-14 3.4E-19 154.6 14.0 230 233-496 180-428 (754)
16 KOG0618 Serine/threonine phosp 99.5 5.7E-16 1.2E-20 160.3 -0.7 227 255-496 219-489 (1081)
17 KOG0617 Ras suppressor protein 99.5 8.6E-17 1.9E-21 134.7 -5.9 161 218-384 20-182 (264)
18 PRK15370 E3 ubiquitin-protein 99.5 3.3E-13 7.1E-18 144.5 12.0 197 231-460 199-405 (754)
19 PRK15387 E3 ubiquitin-protein 99.4 7.1E-13 1.5E-17 141.2 13.6 155 279-459 283-462 (788)
20 PF00931 NB-ARC: NB-ARC domain 99.4 1.2E-16 2.6E-21 155.3 -15.4 120 19-154 156-285 (287)
21 KOG0618 Serine/threonine phosp 99.4 3E-14 6.5E-19 147.8 -3.3 247 231-493 241-510 (1081)
22 cd00116 LRR_RI Leucine-rich re 99.3 2.8E-13 6.2E-18 133.7 0.9 240 249-504 17-298 (319)
23 KOG4658 Apoptotic ATPase [Sign 99.3 1.5E-12 3.3E-17 141.6 6.4 203 230-455 522-730 (889)
24 cd00116 LRR_RI Leucine-rich re 99.2 3.2E-12 6.8E-17 126.3 -0.5 249 232-494 24-318 (319)
25 KOG0532 Leucine-rich repeat (L 99.0 1.9E-11 4.1E-16 121.0 -1.6 172 274-474 94-271 (722)
26 KOG4237 Extracellular matrix p 99.0 4.5E-11 9.8E-16 113.3 -0.9 125 233-360 69-198 (498)
27 KOG4237 Extracellular matrix p 98.9 6.5E-11 1.4E-15 112.3 -5.0 105 230-335 90-198 (498)
28 PF14580 LRR_9: Leucine-rich r 98.8 5.9E-09 1.3E-13 91.5 4.0 61 271-334 12-73 (175)
29 PLN03150 hypothetical protein; 98.8 1.5E-08 3.3E-13 108.3 7.7 106 279-385 419-525 (623)
30 COG4886 Leucine-rich repeat (L 98.7 1.7E-08 3.8E-13 102.7 6.3 181 251-459 112-294 (394)
31 KOG0532 Leucine-rich repeat (L 98.7 9.1E-10 2E-14 109.3 -3.4 141 236-385 103-244 (722)
32 KOG3207 Beta-tubulin folding c 98.7 3.6E-09 7.9E-14 101.9 0.6 85 252-337 118-209 (505)
33 KOG3207 Beta-tubulin folding c 98.7 3.7E-09 8E-14 101.9 -0.0 149 231-382 121-278 (505)
34 PLN03150 hypothetical protein; 98.6 9.3E-08 2E-12 102.3 8.7 104 257-361 420-526 (623)
35 COG4886 Leucine-rich repeat (L 98.6 6.2E-08 1.3E-12 98.7 6.9 182 225-423 110-293 (394)
36 smart00255 TIR Toll - interleu 98.6 5.3E-07 1.2E-11 77.2 11.4 120 13-133 1-123 (140)
37 PF14580 LRR_9: Leucine-rich r 98.5 1E-07 2.2E-12 83.8 5.0 80 408-515 65-145 (175)
38 KOG4341 F-box protein containi 98.5 3.6E-09 7.7E-14 101.5 -4.6 153 348-517 293-459 (483)
39 KOG1259 Nischarin, modulator o 98.5 3E-08 6.4E-13 91.2 1.4 68 223-291 173-250 (490)
40 KOG1259 Nischarin, modulator o 98.4 2.5E-08 5.5E-13 91.7 -0.9 120 255-382 284-406 (490)
41 PF13855 LRR_8: Leucine rich r 98.4 4.3E-07 9.3E-12 65.3 4.3 57 279-335 2-59 (61)
42 PRK15386 type III secretion pr 98.4 1.5E-06 3.2E-11 85.8 8.7 157 279-475 53-212 (426)
43 KOG1909 Ran GTPase-activating 98.3 3.2E-08 6.9E-13 93.0 -4.2 184 299-495 90-310 (382)
44 KOG2120 SCF ubiquitin ligase, 98.2 3.8E-08 8.3E-13 90.4 -5.4 82 280-362 187-272 (419)
45 KOG1909 Ran GTPase-activating 98.2 5E-07 1.1E-11 85.1 1.3 211 275-502 27-288 (382)
46 PF13855 LRR_8: Leucine rich r 98.1 3E-06 6.5E-11 60.9 3.6 61 301-362 1-61 (61)
47 PRK15386 type III secretion pr 98.0 2.1E-05 4.5E-10 77.8 8.4 60 231-295 52-112 (426)
48 KOG0531 Protein phosphatase 1, 97.9 2.7E-06 5.9E-11 87.0 0.4 219 251-499 91-321 (414)
49 PF12799 LRR_4: Leucine Rich r 97.9 1.5E-05 3.2E-10 52.6 3.4 36 278-313 1-36 (44)
50 PF01582 TIR: TIR domain; Int 97.9 2.5E-05 5.3E-10 66.9 5.6 99 16-114 1-105 (141)
51 KOG1859 Leucine-rich repeat pr 97.8 1.2E-06 2.5E-11 90.0 -5.0 98 280-385 166-264 (1096)
52 KOG4341 F-box protein containi 97.7 7.2E-07 1.6E-11 86.0 -6.4 258 231-504 138-422 (483)
53 KOG0531 Protein phosphatase 1, 97.7 1.6E-05 3.4E-10 81.4 2.1 129 227-362 91-220 (414)
54 KOG1859 Leucine-rich repeat pr 97.7 1.3E-06 2.7E-11 89.8 -6.0 110 274-389 183-293 (1096)
55 KOG3665 ZYG-1-like serine/thre 97.6 2.2E-05 4.9E-10 84.1 1.6 150 231-382 122-282 (699)
56 PF12799 LRR_4: Leucine Rich r 97.4 0.00017 3.8E-09 47.5 3.3 39 255-294 1-40 (44)
57 KOG2982 Uncharacterized conser 97.4 5.4E-05 1.2E-09 70.2 0.7 82 253-335 69-156 (418)
58 KOG2120 SCF ubiquitin ligase, 97.3 2.9E-05 6.2E-10 72.0 -1.8 154 326-497 186-352 (419)
59 KOG4579 Leucine-rich repeat (L 97.2 4.9E-05 1.1E-09 62.4 -0.9 91 220-312 42-134 (177)
60 KOG4579 Leucine-rich repeat (L 97.2 3.1E-05 6.7E-10 63.5 -2.8 79 254-334 52-132 (177)
61 KOG3665 ZYG-1-like serine/thre 97.0 0.0005 1.1E-08 73.9 4.1 142 350-515 123-280 (699)
62 PF13676 TIR_2: TIR domain; PD 97.0 0.00058 1.3E-08 54.7 3.3 93 16-114 1-96 (102)
63 KOG2982 Uncharacterized conser 96.6 0.0011 2.3E-08 61.8 2.2 207 254-480 44-266 (418)
64 COG5238 RNA1 Ran GTPase-activa 96.5 0.0016 3.5E-08 59.9 2.5 188 252-453 27-253 (388)
65 KOG1644 U2-associated snRNP A' 96.4 0.0058 1.3E-07 53.9 5.4 54 281-335 45-98 (233)
66 KOG1644 U2-associated snRNP A' 96.3 0.0055 1.2E-07 54.0 4.4 103 255-360 42-150 (233)
67 COG5238 RNA1 Ran GTPase-activa 96.2 0.0017 3.7E-08 59.7 1.1 208 229-454 28-284 (388)
68 KOG2739 Leucine-rich acidic nu 96.0 0.0032 7E-08 57.8 1.6 84 251-336 39-127 (260)
69 KOG2739 Leucine-rich acidic nu 95.9 0.0053 1.1E-07 56.4 2.6 57 278-335 43-101 (260)
70 PF00560 LRR_1: Leucine Rich R 95.9 0.0044 9.6E-08 33.9 1.2 19 280-298 2-20 (22)
71 KOG1947 Leucine rich repeat pr 95.8 0.0019 4.2E-08 67.4 -0.6 182 300-497 187-390 (482)
72 KOG2123 Uncharacterized conser 95.0 0.00095 2.1E-08 61.5 -5.4 97 232-331 20-123 (388)
73 KOG2123 Uncharacterized conser 95.0 0.0015 3.2E-08 60.3 -4.2 64 222-288 32-98 (388)
74 PF00560 LRR_1: Leucine Rich R 94.3 0.022 4.8E-07 31.1 1.0 21 302-323 1-21 (22)
75 smart00367 LRR_CC Leucine-rich 94.3 0.062 1.3E-06 30.7 3.0 24 482-505 1-24 (26)
76 PF13504 LRR_7: Leucine rich r 94.2 0.029 6.3E-07 28.5 1.3 16 408-423 2-17 (17)
77 PF13306 LRR_5: Leucine rich r 94.0 0.24 5.1E-06 41.2 7.4 99 251-358 8-111 (129)
78 KOG1947 Leucine rich repeat pr 93.7 0.021 4.6E-07 59.6 0.5 166 323-505 186-373 (482)
79 KOG3864 Uncharacterized conser 93.7 0.014 3.1E-07 51.5 -0.7 98 408-516 102-210 (221)
80 PF13504 LRR_7: Leucine rich r 92.7 0.078 1.7E-06 26.9 1.4 12 280-291 3-14 (17)
81 KOG3864 Uncharacterized conser 90.7 0.069 1.5E-06 47.3 -0.1 63 375-454 125-188 (221)
82 PF13306 LRR_5: Leucine rich r 88.8 1.9 4.1E-05 35.5 7.3 95 232-334 13-112 (129)
83 KOG0473 Leucine-rich repeat pr 86.4 0.025 5.5E-07 51.1 -5.8 80 231-312 42-122 (326)
84 smart00369 LRR_TYP Leucine-ric 86.2 0.51 1.1E-05 26.8 1.5 19 278-296 2-20 (26)
85 smart00370 LRR Leucine-rich re 86.2 0.51 1.1E-05 26.8 1.5 19 278-296 2-20 (26)
86 KOG0473 Leucine-rich repeat pr 84.4 0.027 5.8E-07 50.9 -6.6 85 251-336 38-122 (326)
87 smart00364 LRR_BAC Leucine-ric 81.6 1 2.2E-05 25.6 1.4 17 407-423 2-18 (26)
88 PF13516 LRR_6: Leucine Rich r 81.1 1.4 3.1E-05 24.3 2.0 22 482-504 1-22 (24)
89 KOG4308 LRR-containing protein 65.8 0.14 3E-06 53.0 -8.5 17 481-497 288-304 (478)
90 smart00365 LRR_SD22 Leucine-ri 59.2 7.4 0.00016 22.2 1.6 13 279-291 3-15 (26)
91 PF08937 DUF1863: MTH538 TIR-l 58.1 26 0.00056 29.1 5.4 26 54-79 58-83 (130)
92 KOG3678 SARM protein (with ste 56.5 57 0.0012 33.2 8.0 92 10-104 609-707 (832)
93 KOG4308 LRR-containing protein 54.9 0.21 4.5E-06 51.7 -9.3 63 251-313 111-184 (478)
94 KOG3763 mRNA export factor TAP 46.0 15 0.00032 38.1 2.4 17 442-458 270-286 (585)
95 smart00368 LRR_RI Leucine rich 40.1 23 0.0005 20.4 1.6 13 408-420 3-15 (28)
96 KOG3763 mRNA export factor TAP 34.7 13 0.00027 38.6 -0.1 36 276-311 216-254 (585)
97 COG1751 Uncharacterized conser 34.0 39 0.00086 28.6 2.7 45 19-67 62-107 (186)
98 KOG4062 6-O-methylguanine-DNA 25.8 54 0.0012 28.0 2.2 58 12-73 77-138 (178)
99 PF11430 EGL-1: Programmed cel 20.7 61 0.0013 17.2 1.0 12 55-66 2-13 (21)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.8e-45 Score=410.29 Aligned_cols=460 Identities=32% Similarity=0.489 Sum_probs=366.6
Q ss_pred CCCCCCCCCCCCCCcEEEecccccccCchHHHHHHHHHhCCCceEeeCCcCCCccchHHHHHHhhhceEE-EEecCCccc
Q 038130 1 MASSSSLHFQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIY-IIFSESDAS 79 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~f~s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l~ 79 (526)
|++|||+ +...+|||||||+|+|.++.|..|++.+|.++|+.+|+|+++++|+.|+..+.+.-+++.+| ++++..+..
T Consensus 1 ~~~~~~~-~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~ 79 (1153)
T PLN03210 1 MASSSSS-SRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYAS 79 (1153)
T ss_pred CCCCCCC-CCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCccc
Confidence 5665543 45689999999999999999999999999999999999999999999999999999999999 778899999
Q ss_pred hhhcHHHHHHHHHHHhhCCCeEEEEEeeccchhhhhccccHHHHHHHHHh--------hchhhhh---------------
Q 038130 80 SSWCLDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEE--------RFPDKMQ--------------- 136 (526)
Q Consensus 80 ~~~~~~~w~~i~~~~~~~~~~il~~sY~~Lp~~lk~~cf~y~~~Fp~d~~--------i~~~~~~--------------- 136 (526)
++|+.+|..+|.++.+.....|+|++|+.=|+++|+|-..|...|.+... -|++++.
T Consensus 80 s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~ 159 (1153)
T PLN03210 80 SSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPN 159 (1153)
T ss_pred chHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCCC
Confidence 99999999999999988889999999999999999999999998876532 2333221
Q ss_pred --------------------------------------------------------------------------------
Q 038130 137 -------------------------------------------------------------------------------- 136 (526)
Q Consensus 137 -------------------------------------------------------------------------------- 136 (526)
T Consensus 160 E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~v 239 (1153)
T PLN03210 160 EAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSV 239 (1153)
T ss_pred HHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEE
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 038130 137 -------------------------------------------------------------------------------- 136 (526)
Q Consensus 137 -------------------------------------------------------------------------------- 136 (526)
T Consensus 240 fv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~ 319 (1153)
T PLN03210 240 FIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQ 319 (1153)
T ss_pred EeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 038130 137 -------------------------------------------------------------------------------- 136 (526)
Q Consensus 137 -------------------------------------------------------------------------------- 136 (526)
T Consensus 320 ~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L 399 (1153)
T PLN03210 320 WFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYL 399 (1153)
T ss_pred cCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence
Q ss_pred ------------------------------------cCCceEEeehhhccccchHHHHHHHHhhCCCCcccchHHHhhcc
Q 038130 137 ------------------------------------TGKKHICLDVAYFLKEERSDMVLSFLDACGFFAGIGLPVLVNRC 180 (526)
Q Consensus 137 ------------------------------------~~~~Li~lwiAegf~~~~~~~~~~~~~~~~~~~~~~~~~Li~~s 180 (526)
+.++.+++|||++|.+.+.+.+..+.+++++.+..+++.|+++|
T Consensus 400 ~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ks 479 (1153)
T PLN03210 400 RGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKS 479 (1153)
T ss_pred cCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcC
Confidence 23678999999999988888888888888888888899999999
Q ss_pred ceeeecCCeEEechhHHHHHHHHHHhhccCCCCCCCCCCChhhHHHHhhcC-----------------------------
Q 038130 181 LITVSHSNTITMHDSLGDMEREIVQKESINYPGECSPLWHHKDIYEVLIVN----------------------------- 231 (526)
Q Consensus 181 l~~~~~~~~~~mhdl~~dla~~i~~~e~~~~~~~~~~l~~~~~~~~~~~~~----------------------------- 231 (526)
|++.. .+.++|||++|+||+++++++. ..++++.++|.+.++++++..+
T Consensus 480 Li~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m 557 (1153)
T PLN03210 480 LIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGM 557 (1153)
T ss_pred CEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcC
Confidence 99987 6789999999999999998886 6788999999999988876533
Q ss_pred -cceEEEeccCC------CCCCCChhccccC-CCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCC
Q 038130 232 -TLVILNLSEYV------SLNSLPAEILHLE-FLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRL 303 (526)
Q Consensus 232 -~l~~L~l~~~~------~~~~lp~~~~~l~-~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L 303 (526)
+++.|.+..+. ....+|..+..++ .|+.|++.++ .++.+|......+|+.|+++++.+..+|..+..+++|
T Consensus 558 ~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~L 636 (1153)
T PLN03210 558 RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGL 636 (1153)
T ss_pred ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcCCccCCcEEECcCccccccccccccCCCC
Confidence 23444443321 1113455555543 4788888775 3666776556788999999999999999999999999
Q ss_pred CEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcc
Q 038130 304 LYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLD 383 (526)
Q Consensus 304 ~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~ 383 (526)
++|+|++|..++.+|. ++.+++|++|++++|..+..+|..++++++|+ .|++++|.....+|..+ .+ ++|+.|++
T Consensus 637 k~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~-~L~L~~c~~L~~Lp~~i-~l-~sL~~L~L- 711 (1153)
T PLN03210 637 RNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLE-DLDMSRCENLEILPTGI-NL-KSLYRLNL- 711 (1153)
T ss_pred CEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCC-EEeCCCCCCcCccCCcC-CC-CCCCEEeC-
Confidence 9999998877888886 88899999999999999999999999999999 99999976558888765 44 89999999
Q ss_pred cCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc--------------------------------------
Q 038130 384 RSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS-------------------------------------- 425 (526)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~-------------------------------------- 425 (526)
.+|..+...+. ..++|+.|++++|.+..+|..
T Consensus 712 ---sgc~~L~~~p~-------~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~ 781 (1153)
T PLN03210 712 ---SGCSRLKSFPD-------ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781 (1153)
T ss_pred ---CCCCCcccccc-------ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccch
Confidence 56654332221 123666666666666555532
Q ss_pred ---cCCC-CcccccHHHhccCCCCEecccCCccCCcCCCc--cccccccccccccccccC
Q 038130 426 ---LEKN-NFERIPESIIQLSRLVVLNLNYCERLQSLPKL--PFNLQGIFAHHCTALSSI 479 (526)
Q Consensus 426 ---l~~~-~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~--~~~L~~L~l~~c~~L~~l 479 (526)
+++| .+..+|.+++++++|+.|+|++|..++.+|.. +++|+.|++++|..+..+
T Consensus 782 ~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 782 RLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred heeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccc
Confidence 1122 34457878888888888888888888877753 567777777777665543
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-48 Score=419.39 Aligned_cols=425 Identities=20% Similarity=0.235 Sum_probs=278.6
Q ss_pred EecccccccCchHHHHHHHHHhCCCceEeeCCcCCCccchHHHHHHhhhceEEEEecCCccchhhcHHHHHHHHHHHhhC
Q 038130 18 LSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYIIFSESDASSSWCLDELLKIVECRTNY 97 (526)
Q Consensus 18 ~s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~I~~kc~GlPLa~~~~g~~l~~~~~~~~w~~i~~~~~~~ 97 (526)
=|...+|||.+|.++||..-.. .++.+ +++|++||+||+|||||++++|+.|+.|.+.+||+++.+.....
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~------~~~~i---~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~ 385 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLG------SHPDI---EELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSS 385 (889)
T ss_pred cccCccccHHHHHHhhcccccc------ccccH---HHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccc
Confidence 4678899999999999881111 11134 99999999999999999999999999999999999999866221
Q ss_pred --------CC---eEEEEEeeccchhhhhccccHHHHHHHHHhhchhhhhcCCceEEeehhhccccc--hHHHHHHHHhh
Q 038130 98 --------GQ---IVVAVCYRVEPSHVRKQIGSFEDSFSKLEERFPDKMQTGKKHICLDVAYFLKEE--RSDMVLSFLDA 164 (526)
Q Consensus 98 --------~~---~il~~sY~~Lp~~lk~~cf~y~~~Fp~d~~i~~~~~~~~~~Li~lwiAegf~~~--~~~~~~~~~~~ 164 (526)
.. .|+..||++||.++| .||+|||+||+||+| ++++||.+||||||+.. .+..+++.++.
T Consensus 386 ~~~~~~~~~~~i~~iLklSyd~L~~~lK-~CFLycalFPED~~I------~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~ 458 (889)
T KOG4658|consen 386 LAADFSGMEESILPILKLSYDNLPEELK-SCFLYCALFPEDYEI------KKEKLIEYWIAEGFIDPLDGGETAEDVGYD 458 (889)
T ss_pred ccCCCCchhhhhHHhhhccHhhhhHHHH-HHHHhhccCCccccc------chHHHHHHHHhccCcCccccccchhcchHH
Confidence 12 356669999999999 899999999999999 99999999999999966 34566667775
Q ss_pred CCCCcccchHHHhhccceeeec----CCeEEechhHHHHHHHHHH-----hhccCCCCC--C------------CCC-CC
Q 038130 165 CGFFAGIGLPVLVNRCLITVSH----SNTITMHDSLGDMEREIVQ-----KESINYPGE--C------------SPL-WH 220 (526)
Q Consensus 165 ~~~~~~~~~~~Li~~sl~~~~~----~~~~~mhdl~~dla~~i~~-----~e~~~~~~~--~------------~~l-~~ 220 (526)
+ +.+|++++|++... ...|+|||+|||+|.++++ ++....... . ++. +.
T Consensus 459 ~-------i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~ 531 (889)
T KOG4658|consen 459 Y-------IEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLM 531 (889)
T ss_pred H-------HHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEe
Confidence 5 99999999999764 2689999999999999998 443221111 0 000 01
Q ss_pred hhhHHHH---hhcCcceEEEeccCCC-CCCCC-hhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccC
Q 038130 221 HKDIYEV---LIVNTLVILNLSEYVS-LNSLP-AEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELP 294 (526)
Q Consensus 221 ~~~~~~~---~~~~~l~~L~l~~~~~-~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp 294 (526)
..++.+. .....+++|-+.++.. +..++ ..|..++.|++|||++|..+..+|. ++++.+||||+++++.+..+|
T Consensus 532 ~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP 611 (889)
T KOG4658|consen 532 NNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLP 611 (889)
T ss_pred ccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccc
Confidence 1111111 1223466777766542 33343 3466788888888888877788886 777888888888888888888
Q ss_pred ccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCC--CCcCCCcccCcccccceeeccccccccccChhhhc
Q 038130 295 SSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSN--LQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVG 372 (526)
Q Consensus 295 ~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~--~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~ 372 (526)
.++++|+.|.+|++..+.....+|..+..|.+|++|.+..... ....-..+.+|.+|+ .+....... .+...+..
T Consensus 612 ~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~-~ls~~~~s~--~~~e~l~~ 688 (889)
T KOG4658|consen 612 SGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE-NLSITISSV--LLLEDLLG 688 (889)
T ss_pred hHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh-hheeecchh--HhHhhhhh
Confidence 8888888888888887766666666555688888888765320 111112233444444 333322211 11112222
Q ss_pred ccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHh-ccCCCCEecccC
Q 038130 373 SNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESII-QLSRLVVLNLNY 451 (526)
Q Consensus 373 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~-~l~~L~~L~L~~ 451 (526)
. +.|.++...-...+|.. .....++..+ .+|+.|.+.+|.+.+.... ..+.. ... .++++..+.+.+
T Consensus 689 ~-~~L~~~~~~l~~~~~~~----~~~~~~~~~l-~~L~~L~i~~~~~~e~~~~----~~~~~--~~~~~f~~l~~~~~~~ 756 (889)
T KOG4658|consen 689 M-TRLRSLLQSLSIEGCSK----RTLISSLGSL-GNLEELSILDCGISEIVIE----WEESL--IVLLCFPNLSKVSILN 756 (889)
T ss_pred h-HHHHHHhHhhhhccccc----ceeecccccc-cCcceEEEEcCCCchhhcc----ccccc--chhhhHHHHHHHHhhc
Confidence 2 33333322111011111 1111112233 3888888888876552210 00000 011 256677777777
Q ss_pred CccCCcCCC--ccccccccccccccccccCC
Q 038130 452 CERLQSLPK--LPFNLQGIFAHHCTALSSIS 480 (526)
Q Consensus 452 ~~~l~~lp~--~~~~L~~L~l~~c~~L~~l~ 480 (526)
|...+.+.. .+|+|+.|.+..|..++.+.
T Consensus 757 ~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 757 CHMLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred cccccccchhhccCcccEEEEecccccccCC
Confidence 776666653 47788888888887777654
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.2e-33 Score=314.73 Aligned_cols=453 Identities=21% Similarity=0.261 Sum_probs=283.0
Q ss_pred CCCcEEEecccccccCchHHHHHHHHHhCCCceEeeCCcCCCccchHHHHHHhhhceEEEEecCCccchhhcHHHHHHHH
Q 038130 12 NRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYIIFSESDASSSWCLDELLKIV 91 (526)
Q Consensus 12 ~~~~~f~s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~I~~kc~GlPLa~~~~g~~l~~~~~~~~w~~i~ 91 (526)
+.|.| -..+.+|||++|..+||+ + .. ..+++ ++++++||++|+|+|||++++|++++.+ +..+|++++
T Consensus 344 ~~~~v-~~l~~~ea~~LF~~~Af~---~-~~---~~~~~---~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l 411 (1153)
T PLN03210 344 HIYEV-CLPSNELALEMFCRSAFK---K-NS---PPDGF---MELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDML 411 (1153)
T ss_pred eEEEe-cCCCHHHHHHHHHHHhcC---C-CC---CcHHH---HHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHH
Confidence 34444 123567899999999986 1 11 01133 8899999999999999999999999876 679999999
Q ss_pred HHHhhC----CCeEEEEEeeccchh-hhhccccHHHHHHHHHhhchhhhhcCCceEEeehhhccccchHHHHHHHHhhCC
Q 038130 92 ECRTNY----GQIVVAVCYRVEPSH-VRKQIGSFEDSFSKLEERFPDKMQTGKKHICLDVAYFLKEERSDMVLSFLDACG 166 (526)
Q Consensus 92 ~~~~~~----~~~il~~sY~~Lp~~-lk~~cf~y~~~Fp~d~~i~~~~~~~~~~Li~lwiAegf~~~~~~~~~~~~~~~~ 166 (526)
+..... ...++.+||+.|+++ .| .||+++++|+.+..+ ..|..|+|++...... .+....+. .
T Consensus 412 ~~L~~~~~~~I~~~L~~SYd~L~~~~~k-~~Fl~ia~ff~~~~~---------~~v~~~l~~~~~~~~~-~l~~L~~k-s 479 (1153)
T PLN03210 412 PRLRNGLDGKIEKTLRVSYDGLNNKKDK-AIFRHIACLFNGEKV---------NDIKLLLANSDLDVNI-GLKNLVDK-S 479 (1153)
T ss_pred HHHHhCccHHHHHHHHHhhhccCccchh-hhhheehhhcCCCCH---------HHHHHHHHhcCCCchh-ChHHHHhc-C
Confidence 887532 223677799999886 66 899999999887655 3345555553221100 01111110 0
Q ss_pred CC----cccchHHHhh---ccce-----eeecCCeEEechhHHHHHHHHHH--------------------hhccC----
Q 038130 167 FF----AGIGLPVLVN---RCLI-----TVSHSNTITMHDSLGDMEREIVQ--------------------KESIN---- 210 (526)
Q Consensus 167 ~~----~~~~~~~Li~---~sl~-----~~~~~~~~~mhdl~~dla~~i~~--------------------~e~~~---- 210 (526)
.. ....+..|+. |..+ ...+......+.-+.++.....+ .+.|.
T Consensus 480 Li~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~ 559 (1153)
T PLN03210 480 LIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRN 559 (1153)
T ss_pred CEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCcc
Confidence 00 0000111110 0000 00000000000001111000000 00000
Q ss_pred -----C-CC-----CCCCCCChhhHHH--------------------HhhcCcceEEEeccCCCCCCCChhccccCCCcE
Q 038130 211 -----Y-PG-----ECSPLWHHKDIYE--------------------VLIVNTLVILNLSEYVSLNSLPAEILHLEFLKK 259 (526)
Q Consensus 211 -----~-~~-----~~~~l~~~~~~~~--------------------~~~~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~ 259 (526)
. .. .......+.+... .....+++.|++.++ .+..+|..+..+++|+.
T Consensus 560 L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~ 638 (1153)
T PLN03210 560 LLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGS-KLEKLWDGVHSLTGLRN 638 (1153)
T ss_pred ccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCc-cccccccccccCCCCCE
Confidence 0 00 0000000011100 112346677787774 46677877888999999
Q ss_pred EeeCCCCCCCcCCCCCCCCcccEEEeccc-CCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCC
Q 038130 260 LNLLGCSKLKRLPEFSSSGKIEEIWLDGT-AIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNL 338 (526)
Q Consensus 260 L~l~~~~~~~~lp~~~~l~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~ 338 (526)
|++++|..++.+|.+..+++|+.|+++++ .+..+|.+++++++|++|++++|..++.+|..+ ++++|++|++++|..+
T Consensus 639 L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L 717 (1153)
T PLN03210 639 IDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRL 717 (1153)
T ss_pred EECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCc
Confidence 99999888888999999999999999854 567899999999999999999998888899866 7889999999888766
Q ss_pred CcCCCcccCc--------------------------------------------------ccccceeeccccccccccCh
Q 038130 339 QRLPDDFGNL--------------------------------------------------EASNSTLYAKGTAAKREVPS 368 (526)
Q Consensus 339 ~~lp~~~~~l--------------------------------------------------~~L~~~L~l~~~~~~~~~~~ 368 (526)
..+|....++ ++|+ .|++++|.....+|.
T Consensus 718 ~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~-~L~Ls~n~~l~~lP~ 796 (1153)
T PLN03210 718 KSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT-RLFLSDIPSLVELPS 796 (1153)
T ss_pred cccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccch-heeCCCCCCccccCh
Confidence 5555322111 2344 455555544455666
Q ss_pred hhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCC-CCCCCc--------cCCCCcccccHHHh
Q 038130 369 SIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGI-LELPDS--------LEKNNFERIPESII 439 (526)
Q Consensus 369 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~lp~~--------l~~~~l~~lp~~l~ 439 (526)
.+..+ ++|+.|++ .+|..+...+.. . . +++|+.|++++|.. ..+|.. +++|.++.+|.++.
T Consensus 797 si~~L-~~L~~L~L----s~C~~L~~LP~~---~-~-L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~ 866 (1153)
T PLN03210 797 SIQNL-HKLEHLEI----ENCINLETLPTG---I-N-LESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIE 866 (1153)
T ss_pred hhhCC-CCCCEEEC----CCCCCcCeeCCC---C-C-ccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHh
Confidence 66555 77777777 555443332211 1 2 34888888888743 334432 77888999999999
Q ss_pred ccCCCCEecccCCccCCcCCCc---cccccccccccccccccCCC-----------------CCCCCEEeccCCCCCCHH
Q 038130 440 QLSRLVVLNLNYCERLQSLPKL---PFNLQGIFAHHCTALSSISY-----------------KSSTQLFDLSDNFKLDRN 499 (526)
Q Consensus 440 ~l~~L~~L~L~~~~~l~~lp~~---~~~L~~L~l~~c~~L~~l~~-----------------~~~L~~L~l~~c~~l~~~ 499 (526)
.+++|+.|++++|+.++.+|.. +++|+.+++.+|.+|+.++. +|....+.+.+|.++...
T Consensus 867 ~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~ 946 (1153)
T PLN03210 867 KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQE 946 (1153)
T ss_pred cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCch
Confidence 9999999999999999998864 45677788999998876542 233455678889888876
Q ss_pred HH
Q 038130 500 AV 501 (526)
Q Consensus 500 ~~ 501 (526)
+.
T Consensus 947 a~ 948 (1153)
T PLN03210 947 AL 948 (1153)
T ss_pred hh
Confidence 63
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=1.3e-21 Score=221.52 Aligned_cols=150 Identities=26% Similarity=0.395 Sum_probs=90.4
Q ss_pred cCcceEEEeccCCCCCCCChhcc-ccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCc-ccCccccCCCCCCEEe
Q 038130 230 VNTLVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIE-ELPSSIGCLSRLLYLY 307 (526)
Q Consensus 230 ~~~l~~L~l~~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~ 307 (526)
.+.+++|++++|.....+|..+. .+++|++|++++|.....+|. ..+++|++|++++|.+. .+|..++++++|++|+
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 170 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD 170 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCChHHhcCCCCCEEE
Confidence 35666666666555455665443 566666666666654444443 34556666666666665 5566666666666666
Q ss_pred ccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEc
Q 038130 308 LSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSL 382 (526)
Q Consensus 308 L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 382 (526)
+++|.+.+.+|..++++++|++|++++|...+.+|..++++++|+ .|++++|.+.+.+|..+..+ ++|++|++
T Consensus 171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~~p~~l~~l-~~L~~L~L 243 (968)
T PLN00113 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK-WIYLGYNNLSGEIPYEIGGL-TSLNHLDL 243 (968)
T ss_pred CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc-EEECcCCccCCcCChhHhcC-CCCCEEEC
Confidence 666655556666666666666666666655555666666666666 66666666655556555555 66666666
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=3.2e-21 Score=218.38 Aligned_cols=258 Identities=22% Similarity=0.298 Sum_probs=117.9
Q ss_pred cceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCc-ccCccccCCCCCCEEecc
Q 038130 232 TLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIE-ELPSSIGCLSRLLYLYLS 309 (526)
Q Consensus 232 ~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~ 309 (526)
.+++|++++|.....+|..++++++|++|++++|.....+|. +..+.+|++|++++|.+. .+|..++++++|++|+++
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 344444444333334444444444444444444433333332 444444444444444443 334444444444444444
Q ss_pred CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCC---
Q 038130 310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSW--- 386 (526)
Q Consensus 310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~--- 386 (526)
+|.+.+.+|..++++++|++|++++|...+.+|..++++++|+ .|++++|.+.+.+|..+..+ ++|+.|+++.|.
T Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ-YLFLYQNKLSGPIPPSIFSL-QKLISLDLSDNSLSG 298 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC-EEECcCCeeeccCchhHhhc-cCcCEEECcCCeecc
Confidence 4444444444444444444444444443334444444444444 44444444433444444333 444444442220
Q ss_pred -----------------CCCCCCCCCCCcccCcccccCcccEEEccCCCCCC-CCCc-----------cCCCCcc-cccH
Q 038130 387 -----------------GGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILE-LPDS-----------LEKNNFE-RIPE 436 (526)
Q Consensus 387 -----------------~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-lp~~-----------l~~~~l~-~lp~ 436 (526)
.++.. .+..+..+..++ +|+.|++++|.+++ +|.. +++|.++ .+|.
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~---~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNF---TGKIPVALTSLP-RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred CCChhHcCCCCCcEEECCCCcc---CCcCChhHhcCC-CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence 11111 001111122222 56666666665543 3322 3444443 3455
Q ss_pred HHhccCCCCEecccCCccCCcCCCc---cccccccccccccccccC----CCCCCCCEEeccCCCC
Q 038130 437 SIIQLSRLVVLNLNYCERLQSLPKL---PFNLQGIFAHHCTALSSI----SYKSSTQLFDLSDNFK 495 (526)
Q Consensus 437 ~l~~l~~L~~L~L~~~~~l~~lp~~---~~~L~~L~l~~c~~L~~l----~~~~~L~~L~l~~c~~ 495 (526)
++..+++|+.|++++|...+.+|.. .++|+.|++++|.-...+ ..+++|+.|++++|.-
T Consensus 375 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 440 (968)
T PLN00113 375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL 440 (968)
T ss_pred hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcc
Confidence 5555555666666655554455532 456677777666543333 2477888888887753
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=9.5e-22 Score=193.97 Aligned_cols=260 Identities=25% Similarity=0.306 Sum_probs=205.0
Q ss_pred ChhhHHHHhhcCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCcccCccc
Q 038130 220 HHKDIYEVLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELPSSI 297 (526)
Q Consensus 220 ~~~~~~~~~~~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~lp~~i 297 (526)
++.++.+ ...+.+||++. +.++..|..+..-+++-+|+||+|+ +..+|. +.++..|-+|||++|.+..+|+.+
T Consensus 95 iP~diF~---l~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~ 169 (1255)
T KOG0444|consen 95 IPTDIFR---LKDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQI 169 (1255)
T ss_pred CCchhcc---cccceeeecch-hhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHH
Confidence 3444443 36789999999 6789999999999999999999964 788886 789999999999999999999999
Q ss_pred cCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCC-CCcCCCcccCcccccceeeccccccccccChhhhcccCC
Q 038130 298 GCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSN-LQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNN 376 (526)
Q Consensus 298 ~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~-~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~ 376 (526)
.+|.+|++|+|++|.+...--..+-.+++|++|.+++.+. +..+|..+..|.+|+ .++++.|++ ..+|..+..+ .+
T Consensus 170 RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~-dvDlS~N~L-p~vPecly~l-~~ 246 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLR-DVDLSENNL-PIVPECLYKL-RN 246 (1255)
T ss_pred HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhh-hccccccCC-CcchHHHhhh-hh
Confidence 9999999999999975432222234578889999987443 456899999999999 999999999 8899999888 99
Q ss_pred cceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc-----------cCCCCc--ccccHHHhccCC
Q 038130 377 LYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS-----------LEKNNF--ERIPESIIQLSR 443 (526)
Q Consensus 377 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~-----------l~~~~l--~~lp~~l~~l~~ 443 (526)
|+.|+++.| ......... +...+|++|+++.|+++.+|+. +.+|.+ ..+|+.++.+.+
T Consensus 247 LrrLNLS~N----~iteL~~~~-----~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~ 317 (1255)
T KOG0444|consen 247 LRRLNLSGN----KITELNMTE-----GEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ 317 (1255)
T ss_pred hheeccCcC----ceeeeeccH-----HHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhh
Confidence 999999544 322222111 1223899999999999988876 455554 478999999999
Q ss_pred CCEecccCCccCCcCCCcc---ccccccccccccccccCC----CCCCCCEEeccCCCCCCH
Q 038130 444 LVVLNLNYCERLQSLPKLP---FNLQGIFAHHCTALSSIS----YKSSTQLFDLSDNFKLDR 498 (526)
Q Consensus 444 L~~L~L~~~~~l~~lp~~~---~~L~~L~l~~c~~L~~l~----~~~~L~~L~l~~c~~l~~ 498 (526)
|+.+...+| .++-+|+.+ +.|+.|.+. |..|-.+| .++.|+.||+..||+|.-
T Consensus 318 Levf~aanN-~LElVPEglcRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 318 LEVFHAANN-KLELVPEGLCRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred hHHHHhhcc-ccccCchhhhhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcCccC
Confidence 999988876 788888753 468888775 44555555 589999999999998864
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.72 E-value=2.7e-18 Score=168.74 Aligned_cols=251 Identities=23% Similarity=0.206 Sum_probs=186.2
Q ss_pred CcceEEEeccCCCCCCCC-hhccccCCCcEEeeCCCCCCCcCC--CCCCCCcccEEEecccCCcccCcc-ccCCCCCCEE
Q 038130 231 NTLVILNLSEYVSLNSLP-AEILHLEFLKKLNLLGCSKLKRLP--EFSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYL 306 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp--~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L 306 (526)
..+|+||++.| .+..+| ..+..-.+++.|+|++|. ++.+. .|.++.+|-.|.|+.|.|+.+|.. |.+|++|+.|
T Consensus 149 ~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 149 PALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESL 226 (873)
T ss_pred hhhhhhhhhhc-hhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCcccccCHHHhhhcchhhhh
Confidence 46789999985 444444 345555789999999976 44443 488888999999999999999864 6779999999
Q ss_pred eccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccCh-hhhcccCCcceEEcccC
Q 038130 307 YLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPS-SIVGSNNNLYELSLDRS 385 (526)
Q Consensus 307 ~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~-~l~~~~~~L~~L~l~~~ 385 (526)
+|.+|.+...--..+..|++|+.|.+..|.....-...|..|..++ +|++..|++ ..+.. +++++ +.|+.|+++.|
T Consensus 227 dLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme-~l~L~~N~l-~~vn~g~lfgL-t~L~~L~lS~N 303 (873)
T KOG4194|consen 227 DLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME-HLNLETNRL-QAVNEGWLFGL-TSLEQLDLSYN 303 (873)
T ss_pred hccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccc-eeecccchh-hhhhccccccc-chhhhhccchh
Confidence 9999874332234578899999999998654433334577888888 999999999 55544 55666 99999999766
Q ss_pred CCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc------------cCCCCcccccH-HHhccCCCCEecccCC
Q 038130 386 WGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS------------LEKNNFERIPE-SIIQLSRLVVLNLNYC 452 (526)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~------------l~~~~l~~lp~-~l~~l~~L~~L~L~~~ 452 (526)
... .+...-..++++|+.|+|++|+++++|.. ++.|+++.+.+ .+..+++|++|+|++|
T Consensus 304 aI~--------rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 304 AIQ--------RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN 375 (873)
T ss_pred hhh--------eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC
Confidence 211 11111224556999999999999998876 78888887764 4667899999999998
Q ss_pred ccCCcCC------CccccccccccccccccccCC-----CCCCCCEEeccCCCC
Q 038130 453 ERLQSLP------KLPFNLQGIFAHHCTALSSIS-----YKSSTQLFDLSDNFK 495 (526)
Q Consensus 453 ~~l~~lp------~~~~~L~~L~l~~c~~L~~l~-----~~~~L~~L~l~~c~~ 495 (526)
..-..+- ..+++|+.|.+.+. +++.++ .++.|++|++.+|+.
T Consensus 376 ~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 376 ELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred eEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcc
Confidence 6444333 23678888888764 445554 588999999998864
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.70 E-value=7.3e-19 Score=173.81 Aligned_cols=262 Identities=19% Similarity=0.228 Sum_probs=146.5
Q ss_pred cceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCC-cCC-CCCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130 232 TLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLK-RLP-EFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS 309 (526)
Q Consensus 232 ~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~lp-~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 309 (526)
+++.|.++.| .+.++...+..++.||.+++..|+.-. .+| ++..+..|..|||+.|++.++|..+.+-+++-.|+|+
T Consensus 56 kLEHLs~~HN-~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS 134 (1255)
T KOG0444|consen 56 KLEHLSMAHN-QLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLS 134 (1255)
T ss_pred hhhhhhhhhh-hhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcc
Confidence 4555555553 333444445556666666666543221 244 3666666677777777777777766666677777777
Q ss_pred CCccCcccCcCC-CCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCC
Q 038130 310 DCKRLKSLPSSL-SQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGG 388 (526)
Q Consensus 310 ~~~~~~~lp~~i-~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 388 (526)
+|. +..+|..+ .+|+.|-.|++++ +.++.+|+.+..|..|+ .|.+++|.+...-...+..+ ++|+.|.+++....
T Consensus 135 ~N~-IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~Lq-tL~Ls~NPL~hfQLrQLPsm-tsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 135 YNN-IETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQ-TLKLSNNPLNHFQLRQLPSM-TSLSVLHMSNTQRT 210 (1255)
T ss_pred cCc-cccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhh-hhhcCCChhhHHHHhcCccc-hhhhhhhcccccch
Confidence 665 44555543 4566666677766 45666666677777777 77777665421111111112 44444444322110
Q ss_pred CCCCCC-----------------CCCcccCcccccCcccEEEccCCCCCCCCCc-----------cCCCCcccccHHHhc
Q 038130 389 DKQMGL-----------------SSPITLPLDGLHTTLTSLYLNYCGILELPDS-----------LEKNNFERIPESIIQ 440 (526)
Q Consensus 389 ~~~~~~-----------------~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~-----------l~~~~l~~lp~~l~~ 440 (526)
-.++.. .+..+.-+..+. +|+.|+|++|.++++... ++.|+++.+|..+..
T Consensus 211 l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~-~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcK 289 (1255)
T KOG0444|consen 211 LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLR-NLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCK 289 (1255)
T ss_pred hhcCCCchhhhhhhhhccccccCCCcchHHHhhhh-hhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhh
Confidence 000000 000000022222 667777777776664332 677778888888888
Q ss_pred cCCCCEecccCCc-cCCcCCCccc---cccccccccccccccCC----CCCCCCEEeccCCCCCCHHH
Q 038130 441 LSRLVVLNLNYCE-RLQSLPKLPF---NLQGIFAHHCTALSSIS----YKSSTQLFDLSDNFKLDRNA 500 (526)
Q Consensus 441 l~~L~~L~L~~~~-~l~~lp~~~~---~L~~L~l~~c~~L~~l~----~~~~L~~L~l~~c~~l~~~~ 500 (526)
++.|+.|.+.+|+ ..+.+|.... +|+.+...+ ..|+.+| .|+.|+.|.++.|.-++-..
T Consensus 290 L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLiTLPe 356 (1255)
T KOG0444|consen 290 LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLITLPE 356 (1255)
T ss_pred hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccceeechh
Confidence 8888888777775 3455665443 344444332 3444444 58899999999887766443
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.69 E-value=2.9e-18 Score=161.49 Aligned_cols=113 Identities=36% Similarity=0.513 Sum_probs=54.0
Q ss_pred cceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCcccc-CCCCCCEEeccC
Q 038130 232 TLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIG-CLSRLLYLYLSD 310 (526)
Q Consensus 232 ~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~ 310 (526)
.++.||... +.++.+|..++.+.+|..|++..| .+..+|.|.++..|..|.++.|.|+.+|..++ .|.+|.+||+..
T Consensus 184 ~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd 261 (565)
T KOG0472|consen 184 RLKHLDCNS-NLLETLPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD 261 (565)
T ss_pred HHHhcccch-hhhhcCChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc
Confidence 445555544 345555555555555555555553 24445555555444444444444444444433 444444444444
Q ss_pred CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCc
Q 038130 311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNL 348 (526)
Q Consensus 311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l 348 (526)
|+ +++.|.+++.+.+|..||+++ +.+..+|..+++|
T Consensus 262 Nk-lke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl 297 (565)
T KOG0472|consen 262 NK-LKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL 297 (565)
T ss_pred cc-cccCchHHHHhhhhhhhcccC-CccccCCcccccc
Confidence 33 344444444444444444444 2233344444444
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.66 E-value=1.6e-16 Score=156.40 Aligned_cols=247 Identities=23% Similarity=0.281 Sum_probs=171.8
Q ss_pred ceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCC-cccEEEecccCCcccC-ccccCCCCCCEEeccC
Q 038130 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSG-KIEEIWLDGTAIEELP-SSIGCLSRLLYLYLSD 310 (526)
Q Consensus 233 l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~-~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~ 310 (526)
.+.|++++|.....-+..|.++++|+.+.+..| .++.+|.++... +++.|+|.+|.|.++. +.+..++.|+.|||+.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 467999996655555677889999999999885 588899876554 4899999999998764 3578889999999999
Q ss_pred CccCcccCc-CCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCC
Q 038130 311 CKRLKSLPS-SLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGD 389 (526)
Q Consensus 311 ~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 389 (526)
|. +..+|. ++..-.++++|++++|.....-...|..+.+|. .|.++.|.+ ..+|...++.+++|+.|++..|
T Consensus 159 N~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~-tlkLsrNri-ttLp~r~Fk~L~~L~~LdLnrN---- 231 (873)
T KOG4194|consen 159 NL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLL-TLKLSRNRI-TTLPQRSFKRLPKLESLDLNRN---- 231 (873)
T ss_pred ch-hhcccCCCCCCCCCceEEeeccccccccccccccccchhe-eeecccCcc-cccCHHHhhhcchhhhhhcccc----
Confidence 86 444543 455667899999999765444445688888888 999999999 8888887775599999999544
Q ss_pred CCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc------------cCCCCccccc-HHHhccCCCCEecccCCccCC
Q 038130 390 KQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS------------LEKNNFERIP-ESIIQLSRLVVLNLNYCERLQ 456 (526)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~------------l~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~ 456 (526)
. ......+.+.++. +|+.|.+..|.+..+.+. ++.|+++.+. .|+-+|+.|+.|++++|. +.
T Consensus 232 ~---irive~ltFqgL~-Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~ 306 (873)
T KOG4194|consen 232 R---IRIVEGLTFQGLP-SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQ 306 (873)
T ss_pred c---eeeehhhhhcCch-hhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh-hh
Confidence 1 1111122255555 888888888877765544 4555665554 466777777778777773 22
Q ss_pred cCC----CccccccccccccccccccCC-----CCCCCCEEeccCC
Q 038130 457 SLP----KLPFNLQGIFAHHCTALSSIS-----YKSSTQLFDLSDN 493 (526)
Q Consensus 457 ~lp----~~~~~L~~L~l~~c~~L~~l~-----~~~~L~~L~l~~c 493 (526)
.+. .+-++|+.|++++.. +..++ .+.+|++|+++.|
T Consensus 307 rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 307 RIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred eeecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhccccc
Confidence 222 124566666665432 22222 2566666666666
No 11
>PLN03194 putative disease resistance protein; Provisional
Probab=99.65 E-value=1.4e-15 Score=130.90 Aligned_cols=107 Identities=29% Similarity=0.506 Sum_probs=98.4
Q ss_pred CCCCCCCCCcEEEecccccccCchHHHHHHHHHhCCCceEeeC-CcCCCccchHHHHHHhhhceEE-EEecCCccchhhc
Q 038130 6 SLHFQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGN-DLKRGDEISQSLGDAVEVSSIY-IIFSESDASSSWC 83 (526)
Q Consensus 6 ~~~~~~~~~~~f~s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~-~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l~~~~~ 83 (526)
|+++-..+|||||||+|+|..+.|..+++.+|..+|+.+|.|+ ++++|+.|...|.+..+++.++ ++++..+..+.|+
T Consensus 19 ~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WC 98 (187)
T PLN03194 19 SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFC 98 (187)
T ss_pred cCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhH
Confidence 3445577899999999999999999999999999999999999 8999999999999999999999 7778889999999
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEeeccchhhhhc
Q 038130 84 LDELLKIVECRTNYGQIVVAVCYRVEPSHVRKQ 116 (526)
Q Consensus 84 ~~~w~~i~~~~~~~~~~il~~sY~~Lp~~lk~~ 116 (526)
.+||..|.++. ..|+|+.|+.-|+++|+|
T Consensus 99 LdEL~~I~e~~----~~ViPIFY~VdPsdVr~q 127 (187)
T PLN03194 99 LHELALIMESK----KRVIPIFCDVKPSQLRVV 127 (187)
T ss_pred HHHHHHHHHcC----CEEEEEEecCCHHHhhcc
Confidence 99999999863 369999999999999985
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.64 E-value=5.4e-18 Score=159.71 Aligned_cols=245 Identities=26% Similarity=0.369 Sum_probs=180.7
Q ss_pred ceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCc
Q 038130 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCK 312 (526)
Q Consensus 233 l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~ 312 (526)
+..+.++.| .+..+.+.+.++..|.+|++.+|......|.++.+..++.|+.+.|.+..+|+.++.+..|+.|++++|.
T Consensus 47 l~~lils~N-~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 47 LQKLILSHN-DLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE 125 (565)
T ss_pred hhhhhhccC-chhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc
Confidence 345556663 3444445577788888888888665544556888888888888888888888888888888888888876
Q ss_pred cCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCC
Q 038130 313 RLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQM 392 (526)
Q Consensus 313 ~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 392 (526)
...+|++++.+..|..|+..+ +....+|+++.++.++. .+++.+|++ ..+|+....+ +.|++|+.-.|
T Consensus 126 -~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~-~l~~~~n~l-~~l~~~~i~m-~~L~~ld~~~N------- 193 (565)
T KOG0472|consen 126 -LKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLS-KLDLEGNKL-KALPENHIAM-KRLKHLDCNSN------- 193 (565)
T ss_pred -eeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHH-Hhhccccch-hhCCHHHHHH-HHHHhcccchh-------
Confidence 566777788888888888776 45677788888888888 888888888 6677766665 88888777322
Q ss_pred CCCCCcccCcccccCcccEEEccCCCCCCCCCc----------cCCCCcccccHHHh-ccCCCCEecccCCccCCcCCC-
Q 038130 393 GLSSPITLPLDGLHTTLTSLYLNYCGILELPDS----------LEKNNFERIPESII-QLSRLVVLNLNYCERLQSLPK- 460 (526)
Q Consensus 393 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~----------l~~~~l~~lp~~l~-~l~~L~~L~L~~~~~l~~lp~- 460 (526)
.....+..++++- +|..|++..|++..+|.. ++.|.++.+|.... ++++|..|++++| .++++|.
T Consensus 194 -~L~tlP~~lg~l~-~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde 270 (565)
T KOG0472|consen 194 -LLETLPPELGGLE-SLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDE 270 (565)
T ss_pred -hhhcCChhhcchh-hhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchH
Confidence 2222333344444 888888888888877754 67788888997766 8999999999998 7888996
Q ss_pred --ccccccccccccccccccC----CCCCCCCEEeccCCCC
Q 038130 461 --LPFNLQGIFAHHCTALSSI----SYKSSTQLFDLSDNFK 495 (526)
Q Consensus 461 --~~~~L~~L~l~~c~~L~~l----~~~~~L~~L~l~~c~~ 495 (526)
.+.+|+.|++++.. +..+ +++ .|+.|-+.|||-
T Consensus 271 ~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred HHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCch
Confidence 36678899998743 3333 356 889999999984
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=1.6e-14 Score=153.65 Aligned_cols=227 Identities=24% Similarity=0.287 Sum_probs=119.2
Q ss_pred ceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCc
Q 038130 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCK 312 (526)
Q Consensus 233 l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~ 312 (526)
-..|+++++ .+..+|..+. ++|+.|.+.+|. ++.+|.. .++|++|++++|.++.+|.. .++|+.|++++|.
T Consensus 203 ~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~-Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 203 NAVLNVGES-GLTTLPDCLP--AHITTLVIPDNN-LTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CcEEEcCCC-CCCcCCcchh--cCCCEEEccCCc-CCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 345666663 4455665443 356666666543 4445542 35566666666666655532 2344555555543
Q ss_pred cCcccCcCCC-----------------CCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccC
Q 038130 313 RLKSLPSSLS-----------------QLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNN 375 (526)
Q Consensus 313 ~~~~lp~~i~-----------------~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~ 375 (526)
+..+|.... .+++|+.|++++| .+..+|.... .|+ .|++++|.+ ..+|. .+.
T Consensus 274 -L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N-~L~~Lp~lp~---~L~-~L~Ls~N~L-~~LP~----lp~ 342 (788)
T PRK15387 274 -LTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN-QLASLPALPS---ELC-KLWAYNNQL-TSLPT----LPS 342 (788)
T ss_pred -hhhhhhchhhcCEEECcCCccccccccccccceeECCCC-ccccCCCCcc---ccc-ccccccCcc-ccccc----ccc
Confidence 223332110 1244555555553 2333333221 233 444555555 33442 114
Q ss_pred CcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc--------cCCCCcccccHHHhccCCCCEe
Q 038130 376 NLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS--------LEKNNFERIPESIIQLSRLVVL 447 (526)
Q Consensus 376 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~--------l~~~~l~~lp~~l~~l~~L~~L 447 (526)
+|+.|+++.| .. ...+ ..+++|+.|++++|.++.+|.. +++|.++.+|.. .++|+.|
T Consensus 343 ~Lq~LdLS~N----~L-s~LP-------~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l---~s~L~~L 407 (788)
T PRK15387 343 GLQELSVSDN----QL-ASLP-------TLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL---PSELKEL 407 (788)
T ss_pred ccceEecCCC----cc-CCCC-------CCCcccceehhhccccccCcccccccceEEecCCcccCCCCc---ccCCCEE
Confidence 5566666332 11 0000 1123555566666655555533 455666666532 3567778
Q ss_pred cccCCccCCcCCCccccccccccccccccccCC----CCCCCCEEeccCCCCC
Q 038130 448 NLNYCERLQSLPKLPFNLQGIFAHHCTALSSIS----YKSSTQLFDLSDNFKL 496 (526)
Q Consensus 448 ~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~----~~~~L~~L~l~~c~~l 496 (526)
++++| .+..+|..+.+|+.|+++++. ++.+| .+++|+.|++++|+--
T Consensus 408 dLS~N-~LssIP~l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 408 MVSGN-RLTSLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred EccCC-cCCCCCcchhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCCC
Confidence 88877 466677777778888887643 45565 4889999999999743
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=5.2e-17 Score=136.02 Aligned_cols=165 Identities=27% Similarity=0.390 Sum_probs=125.1
Q ss_pred CCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCC
Q 038130 246 SLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLK 325 (526)
Q Consensus 246 ~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~ 325 (526)
.+|. +.++.+...|-+++|......|.+..+.+|++|++.+|+|+++|.+++.|++|+.|+++-|+ +..+|.+++.++
T Consensus 25 ~~~g-Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p 102 (264)
T KOG0617|consen 25 ELPG-LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFP 102 (264)
T ss_pred hccc-ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCc
Confidence 3444 44477778888888764444556888888999999999999999999999999999998776 667899999999
Q ss_pred CCcEEeecCCCCCC-cCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCccc
Q 038130 326 SLKLLNLHGCSNLQ-RLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDG 404 (526)
Q Consensus 326 ~L~~L~l~~~~~~~-~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 404 (526)
-|+.|++.+|+..+ .+|..|-.|+.|+ .|.+++|.+ ..+|..++.+ ++|+.|.+..|
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlr-alyl~dndf-e~lp~dvg~l-t~lqil~lrdn------------------- 160 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLR-ALYLGDNDF-EILPPDVGKL-TNLQILSLRDN------------------- 160 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHH-HHHhcCCCc-ccCChhhhhh-cceeEEeeccC-------------------
Confidence 99999998866543 4788888888888 889999988 8888888777 77777666222
Q ss_pred ccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCC
Q 038130 405 LHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK 460 (526)
Q Consensus 405 ~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~ 460 (526)
.+-++|..++.++.|++|.+.+| .+..+|+
T Consensus 161 -------------------------dll~lpkeig~lt~lrelhiqgn-rl~vlpp 190 (264)
T KOG0617|consen 161 -------------------------DLLSLPKEIGDLTRLRELHIQGN-RLTVLPP 190 (264)
T ss_pred -------------------------chhhCcHHHHHHHHHHHHhcccc-eeeecCh
Confidence 23345667777777777777776 4555553
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.58 E-value=1.5e-14 Score=154.62 Aligned_cols=230 Identities=23% Similarity=0.338 Sum_probs=130.8
Q ss_pred ceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEeccCC
Q 038130 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDC 311 (526)
Q Consensus 233 l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~ 311 (526)
...|++++ ..+..+|..+. +.|+.|++++|. ++.+|. +. .+|++|++++|.++.+|..+. .+|+.|+|++|
T Consensus 180 ~~~L~L~~-~~LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 180 KTELRLKI-LGLTTIPACIP--EQITTLILDNNE-LKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred ceEEEeCC-CCcCcCCcccc--cCCcEEEecCCC-CCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 45566665 34555555432 456666666643 444553 22 356666666666666665443 35666666665
Q ss_pred ccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCC
Q 038130 312 KRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQ 391 (526)
Q Consensus 312 ~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 391 (526)
. +..+|..+. .+|+.|++++| .+..+|..+. .+|+ .|++++|.+ ..+|..+. ++|+.|+++.| ..
T Consensus 252 ~-L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~-~L~Ls~N~L-t~LP~~lp---~sL~~L~Ls~N----~L 316 (754)
T PRK15370 252 R-ITELPERLP--SALQSLDLFHN-KISCLPENLP--EELR-YLSVYDNSI-RTLPAHLP---SGITHLNVQSN----SL 316 (754)
T ss_pred c-cCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCc-EEECCCCcc-ccCcccch---hhHHHHHhcCC----cc
Confidence 5 335555442 35666666653 3345555443 2455 666666666 44554331 34555555322 11
Q ss_pred CCCCCCcccCcccccCcccEEEccCCCCCCCCCc---------cCCCCcccccHHHhccCCCCEecccCCccCCcCCC-c
Q 038130 392 MGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS---------LEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK-L 461 (526)
Q Consensus 392 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~---------l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~-~ 461 (526)
.. .+ . ..+++|+.|++++|.++++|.. +++|.++.+|..+ .++|+.|+|++| .+..+|. +
T Consensus 317 t~-LP---~---~l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N-~Lt~LP~~l 386 (754)
T PRK15370 317 TA-LP---E---TLPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETL--PPTITTLDVSRN-ALTNLPENL 386 (754)
T ss_pred cc-CC---c---cccccceeccccCCccccCChhhcCcccEEECCCCCCCcCChhh--cCCcCEEECCCC-cCCCCCHhH
Confidence 10 00 0 1113566666666655555532 4555666667655 368999999998 5667775 4
Q ss_pred cccccccccccccccccCC--------CCCCCCEEeccCCCCC
Q 038130 462 PFNLQGIFAHHCTALSSIS--------YKSSTQLFDLSDNFKL 496 (526)
Q Consensus 462 ~~~L~~L~l~~c~~L~~l~--------~~~~L~~L~l~~c~~l 496 (526)
+.+|+.|+++++. +..++ .++++..|++.+||--
T Consensus 387 ~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 387 PAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 5679999998853 45554 2578899999999854
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.54 E-value=5.7e-16 Score=160.28 Aligned_cols=227 Identities=24% Similarity=0.312 Sum_probs=144.9
Q ss_pred CCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecC
Q 038130 255 EFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHG 334 (526)
Q Consensus 255 ~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~ 334 (526)
++|+.|..++|... .+-.-..-.+|++++++.+++..+|+.++.+.+|+.+++..|. +..+|..+....+|+.|.+..
T Consensus 219 ~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 219 PSLTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred cchheeeeccCcce-eeccccccccceeeecchhhhhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhh
Confidence 44555555555433 2111223344566666666666666666666666666666654 355665566666666666655
Q ss_pred CCCCCcCCCcccCcccccceeeccccccccccChhhhc-------------------------ccCCcceEEcccCCCCC
Q 038130 335 CSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVG-------------------------SNNNLYELSLDRSWGGD 389 (526)
Q Consensus 335 ~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~-------------------------~~~~L~~L~l~~~~~~~ 389 (526)
| .+..+|...++++.|+ +|++..|++ ..+|..++. .++.|+.|.+.+|
T Consensus 297 n-el~yip~~le~~~sL~-tLdL~~N~L-~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN---- 369 (1081)
T KOG0618|consen 297 N-ELEYIPPFLEGLKSLR-TLDLQSNNL-PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN---- 369 (1081)
T ss_pred h-hhhhCCCcccccceee-eeeehhccc-cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC----
Confidence 3 4455555555566666 666666665 555543322 1233444444333
Q ss_pred CCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc------------cCCCCcccccHHHhccCCCCEecccCCccCCc
Q 038130 390 KQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS------------LEKNNFERIPESIIQLSRLVVLNLNYCERLQS 457 (526)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~------------l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~ 457 (526)
.........+.++. +|+.|+|++|++.++|+. ++||.++.+|..+..++.|++|...+| .+..
T Consensus 370 ---~Ltd~c~p~l~~~~-hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~ 444 (1081)
T KOG0618|consen 370 ---HLTDSCFPVLVNFK-HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLS 444 (1081)
T ss_pred ---cccccchhhhcccc-ceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceee
Confidence 11111222244555 999999999999999987 899999999999999999999998887 7788
Q ss_pred CCCc--cccccccccccccccccCC----CC-CCCCEEeccCCCCC
Q 038130 458 LPKL--PFNLQGIFAHHCTALSSIS----YK-SSTQLFDLSDNFKL 496 (526)
Q Consensus 458 lp~~--~~~L~~L~l~~c~~L~~l~----~~-~~L~~L~l~~c~~l 496 (526)
+|++ ++.|+.++++ |..|..+. .. |+|++||++||+.+
T Consensus 445 fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 445 FPELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred chhhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCccc
Confidence 8874 6789999987 45555433 12 79999999999863
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=8.6e-17 Score=134.70 Aligned_cols=161 Identities=24% Similarity=0.346 Sum_probs=139.9
Q ss_pred CCChhhHHHHhhcCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCcc
Q 038130 218 LWHHKDIYEVLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPSS 296 (526)
Q Consensus 218 l~~~~~~~~~~~~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~~ 296 (526)
++...++.+++.....+.|.++. +.+..+|+.+..+.+|++|++++|. ++.+| .++.+++|+.|+++-|.+..+|..
T Consensus 20 iSsf~~~~gLf~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprg 97 (264)
T KOG0617|consen 20 ISSFEELPGLFNMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRG 97 (264)
T ss_pred cccHhhcccccchhhhhhhhccc-CceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccc
Confidence 44555666666667778889998 5778889889999999999999864 67777 599999999999999999999999
Q ss_pred ccCCCCCCEEeccCCccCc-ccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccC
Q 038130 297 IGCLSRLLYLYLSDCKRLK-SLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNN 375 (526)
Q Consensus 297 i~~L~~L~~L~L~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~ 375 (526)
||.++.|+.|||.+|.... .+|..+..++.|+.|++++ +..+.+|..++++++|+ .|.+.+|.+ -.+|..++.+ +
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lq-il~lrdndl-l~lpkeig~l-t 173 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQ-ILSLRDNDL-LSLPKEIGDL-T 173 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhccee-EEeeccCch-hhCcHHHHHH-H
Confidence 9999999999999987654 6899899999999999999 46788999999999999 999999999 8899999888 8
Q ss_pred CcceEEccc
Q 038130 376 NLYELSLDR 384 (526)
Q Consensus 376 ~L~~L~l~~ 384 (526)
.|++|.+..
T Consensus 174 ~lrelhiqg 182 (264)
T KOG0617|consen 174 RLRELHIQG 182 (264)
T ss_pred HHHHHhccc
Confidence 888888843
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.46 E-value=3.3e-13 Score=144.55 Aligned_cols=197 Identities=24% Similarity=0.378 Sum_probs=114.5
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS 309 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 309 (526)
..++.|++++| .+..+|..+. .+|++|++++|. ++.+|. +. .+|+.|+|++|.+..+|..+. .+|++|+++
T Consensus 199 ~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLF 270 (754)
T ss_pred cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECc
Confidence 35778888874 5667776553 578888888764 555664 22 357888888888887777664 478888888
Q ss_pred CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCC
Q 038130 310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGD 389 (526)
Q Consensus 310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 389 (526)
+|. +..+|..+. .+|+.|++++|. +..+|..+. .+|+ .|++++|.+ ..+|..+. ++|+.|.+..|
T Consensus 271 ~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~-~L~Ls~N~L-t~LP~~l~---~sL~~L~Ls~N---- 335 (754)
T PRK15370 271 HNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGIT-HLNVQSNSL-TALPETLP---PGLKTLEAGEN---- 335 (754)
T ss_pred CCc-cCccccccC--CCCcEEECCCCc-cccCcccch--hhHH-HHHhcCCcc-ccCCcccc---ccceeccccCC----
Confidence 765 445776553 478888887753 445665432 2455 666666666 44554332 45666666332
Q ss_pred CCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc---------cCCCCcccccHHHhccCCCCEecccCCccCCcCCC
Q 038130 390 KQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS---------LEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK 460 (526)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~---------l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~ 460 (526)
....... .++++|+.|++++|.++.+|.. +++|.++.+|..+. .+|+.|++++| .+..+|.
T Consensus 336 ~Lt~LP~-------~l~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N-~L~~LP~ 405 (754)
T PRK15370 336 ALTSLPA-------SLPPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPENLP--AALQIMQASRN-NLVRLPE 405 (754)
T ss_pred ccccCCh-------hhcCcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccC-CcccCch
Confidence 1111100 1123555666666655544432 45555555555443 24555666655 3344443
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.45 E-value=7.1e-13 Score=141.21 Aligned_cols=155 Identities=25% Similarity=0.295 Sum_probs=90.4
Q ss_pred cccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCC-----------------CCCCcEEeecCCCCCCcC
Q 038130 279 KIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQ-----------------LKSLKLLNLHGCSNLQRL 341 (526)
Q Consensus 279 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~-----------------l~~L~~L~l~~~~~~~~l 341 (526)
+|+.|++++|.++.+|.. +++|++|++++|.+. .+|..... ..+|++|++++| .+..+
T Consensus 283 ~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~-~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N-~Ls~L 357 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDN-QLASL 357 (788)
T ss_pred hcCEEECcCCcccccccc---ccccceeECCCCccc-cCCCCcccccccccccCccccccccccccceEecCCC-ccCCC
Confidence 345555555555555542 356777777776533 34431111 124556666553 33444
Q ss_pred CCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCC
Q 038130 342 PDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILE 421 (526)
Q Consensus 342 p~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 421 (526)
|.... +|. .|++++|.+ ..+|.. +.+|+.|+++.| .. ...+ ..+++|+.|++++|.+++
T Consensus 358 P~lp~---~L~-~L~Ls~N~L-~~LP~l----~~~L~~LdLs~N----~L-t~LP-------~l~s~L~~LdLS~N~Lss 416 (788)
T PRK15387 358 PTLPS---ELY-KLWAYNNRL-TSLPAL----PSGLKELIVSGN----RL-TSLP-------VLPSELKELMVSGNRLTS 416 (788)
T ss_pred CCCCc---ccc-eehhhcccc-ccCccc----ccccceEEecCC----cc-cCCC-------CcccCCCEEEccCCcCCC
Confidence 44322 334 555666655 345532 256777777433 11 1111 122478888888888888
Q ss_pred CCCc--------cCCCCcccccHHHhccCCCCEecccCCccCCcCC
Q 038130 422 LPDS--------LEKNNFERIPESIIQLSRLVVLNLNYCERLQSLP 459 (526)
Q Consensus 422 lp~~--------l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 459 (526)
+|.. +++|.++.+|..+..+++|+.|+|++|+.-+..|
T Consensus 417 IP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 417 LPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred CCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHH
Confidence 7764 6788888888888888888888888887555443
No 20
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.43 E-value=1.2e-16 Score=155.33 Aligned_cols=120 Identities=15% Similarity=0.121 Sum_probs=90.5
Q ss_pred ecccccccCchHHHHHHHHHhCCCceEeeCCcCCCccchHHHHHHhhhceEEEEecCCccchhhcHHHHHHHHHHHhhCC
Q 038130 19 SFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYIIFSESDASSSWCLDELLKIVECRTNYG 98 (526)
Q Consensus 19 s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~I~~kc~GlPLa~~~~g~~l~~~~~~~~w~~i~~~~~~~~ 98 (526)
.++.+|+|++|.+.++. .. ...++.+ ++++++|+++|+|+|||++++|++++.+.+.++|.++++......
T Consensus 156 ~L~~~ea~~L~~~~~~~---~~---~~~~~~~---~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~ 226 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGR---KE---SESPEDL---EDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSL 226 (287)
T ss_dssp S--HHHHHHHHHHHHTS---HS-------TTS---CTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCH
T ss_pred ccccccccccccccccc---cc---ccccccc---ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45777899999998765 11 1112234 899999999999999999999999977778889999997762221
Q ss_pred -------Ce---EEEEEeeccchhhhhccccHHHHHHHHHhhchhhhhcCCceEEeehhhccccch
Q 038130 99 -------QI---VVAVCYRVEPSHVRKQIGSFEDSFSKLEERFPDKMQTGKKHICLDVAYFLKEER 154 (526)
Q Consensus 99 -------~~---il~~sY~~Lp~~lk~~cf~y~~~Fp~d~~i~~~~~~~~~~Li~lwiAegf~~~~ 154 (526)
.. ++..||+.||.++| .||.||++||+++.| +++.+|.+|+||||+...
T Consensus 227 ~~~~~~~~~~~~~l~~s~~~L~~~~~-~~f~~L~~f~~~~~i------~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 227 RESRDYDRSVFSALELSYDSLPDELR-RCFLYLSIFPEGVPI------PRERLIRLWVAEGFISSK 285 (287)
T ss_dssp TCSSGSCHHHHHHHHHHHHSSHTCCH-HHHHHGGGSGTTS-E------EHHHHHHHHTT-HHTC--
T ss_pred cccccccccccccceechhcCCccHH-HHHhhCcCCCCCceE------CHHHHHHHHHHCCCCccc
Confidence 11 34449999999999 799999999999999 888999999999998653
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.36 E-value=3e-14 Score=147.76 Aligned_cols=247 Identities=27% Similarity=0.296 Sum_probs=166.6
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS 309 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 309 (526)
.++.+++++. +.+..+|+++..+.+|+.|+..+|. +..+|. +....+|++|++..|.++.+|...+.++.|++|+|.
T Consensus 241 ~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 241 LNLQYLDISH-NNLSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccceeeecch-hhhhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence 4567777777 4556677777777778877777754 355553 777777777777777777777777777778888887
Q ss_pred CCccCcccCcCCC-CCC-CCcEEeecCCCCCCcCCC-cccCcccccceeeccccccccccChhhhcccCCcceEEcccCC
Q 038130 310 DCKRLKSLPSSLS-QLK-SLKLLNLHGCSNLQRLPD-DFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSW 386 (526)
Q Consensus 310 ~~~~~~~lp~~i~-~l~-~L~~L~l~~~~~~~~lp~-~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 386 (526)
.|. +..+|+.+- .+. .|+.|+.+. +.+..+|. +=..+..|+ .|.+.+|.++...-+.+.+. .+|+.|+++.|.
T Consensus 319 ~N~-L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq-~LylanN~Ltd~c~p~l~~~-~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 319 SNN-LPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQ-ELYLANNHLTDSCFPVLVNF-KHLKVLHLSYNR 394 (1081)
T ss_pred hcc-ccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHH-HHHHhcCcccccchhhhccc-cceeeeeecccc
Confidence 765 555665321 122 245555554 33444442 122345677 88899998877776666666 999999996651
Q ss_pred CCCCCCCCCCCcccC-cccccCcccEEEccCCCCCCCCCc-----------cCCCCcccccHHHhccCCCCEecccCCcc
Q 038130 387 GGDKQMGLSSPITLP-LDGLHTTLTSLYLNYCGILELPDS-----------LEKNNFERIPESIIQLSRLVVLNLNYCER 454 (526)
Q Consensus 387 ~~~~~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~lp~~-----------l~~~~l~~lp~~l~~l~~L~~L~L~~~~~ 454 (526)
. . ..+.. +.++. .|+.|+||||+++.+|+. ..+|.+..+| .+..++.|+.++++.|..
T Consensus 395 L-------~-~fpas~~~kle-~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 395 L-------N-SFPASKLRKLE-ELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred c-------c-cCCHHHHhchH-HhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchh
Confidence 1 1 11111 33443 899999999999999976 5788999999 889999999999998742
Q ss_pred -CCcCCC-cc-ccccccccccccccc----cCCCCCCCCEEeccCC
Q 038130 455 -LQSLPK-LP-FNLQGIFAHHCTALS----SISYKSSTQLFDLSDN 493 (526)
Q Consensus 455 -l~~lp~-~~-~~L~~L~l~~c~~L~----~l~~~~~L~~L~l~~c 493 (526)
...+|. .+ ++|++|++++...+. .++.+..+...++.-+
T Consensus 465 ~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 465 SEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 223343 35 799999999987432 3444555555555544
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.32 E-value=2.8e-13 Score=133.75 Aligned_cols=240 Identities=20% Similarity=0.161 Sum_probs=125.5
Q ss_pred hhccccCCCcEEeeCCCCCCC----cCCC-CCCCCcccEEEecccCCcc-------cCccccCCCCCCEEeccCCccCcc
Q 038130 249 AEILHLEFLKKLNLLGCSKLK----RLPE-FSSSGKIEEIWLDGTAIEE-------LPSSIGCLSRLLYLYLSDCKRLKS 316 (526)
Q Consensus 249 ~~~~~l~~L~~L~l~~~~~~~----~lp~-~~~l~~L~~L~L~~~~i~~-------lp~~i~~L~~L~~L~L~~~~~~~~ 316 (526)
..+..+..|++|++++|.... .++. +...+.+++|+++++.+.. ++..+..+++|+.|++++|.+...
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 334445556666666654211 1221 3444555666666554431 234455666777777777665443
Q ss_pred cCcCCCCCCC---CcEEeecCCCCCC----cCCCcccCc-ccccceeeccccccccc----cChhhhcccCCcceEEccc
Q 038130 317 LPSSLSQLKS---LKLLNLHGCSNLQ----RLPDDFGNL-EASNSTLYAKGTAAKRE----VPSSIVGSNNNLYELSLDR 384 (526)
Q Consensus 317 lp~~i~~l~~---L~~L~l~~~~~~~----~lp~~~~~l-~~L~~~L~l~~~~~~~~----~~~~l~~~~~~L~~L~l~~ 384 (526)
.+..+..+.+ |++|++++|.... .+...+..+ ++|+ .|++++|.+++. ++..+... ++|++|++..
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~-~L~L~~n~l~~~~~~~~~~~~~~~-~~L~~L~l~~ 174 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE-KLVLGRNRLEGASCEALAKALRAN-RDLKELNLAN 174 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCce-EEEcCCCcCCchHHHHHHHHHHhC-CCcCEEECcC
Confidence 4433333333 7777777664331 122234444 5666 777777766422 22223233 5677777733
Q ss_pred CCCCCCCCCCCCC--cccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCC----c-
Q 038130 385 SWGGDKQMGLSSP--ITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQ----S- 457 (526)
Q Consensus 385 ~~~~~~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~----~- 457 (526)
|.... .+. ....+... ++|+.|++++|.+++ .....++..+..+++|+.|++++|+.-. .
T Consensus 175 ----n~l~~-~~~~~l~~~l~~~-~~L~~L~L~~n~i~~-------~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 175 ----NGIGD-AGIRALAEGLKAN-CNLEVLDLNNNGLTD-------EGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred ----CCCch-HHHHHHHHHHHhC-CCCCEEeccCCccCh-------HHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 22110 000 00001122 378888888776543 1333455556677788888888875322 1
Q ss_pred ---CCCcccccccccccccccc--------ccCCCCCCCCEEeccCCCCCCHHHHHHH
Q 038130 458 ---LPKLPFNLQGIFAHHCTAL--------SSISYKSSTQLFDLSDNFKLDRNAVRII 504 (526)
Q Consensus 458 ---lp~~~~~L~~L~l~~c~~L--------~~l~~~~~L~~L~l~~c~~l~~~~~~~~ 504 (526)
++...+.|+.|++.+|.-- +.++.+++|+++++++|. +...+...+
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~~~ 298 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGAQLL 298 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHHHHH
Confidence 1111257888888777432 234457899999999984 444444333
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.32 E-value=1.5e-12 Score=141.61 Aligned_cols=203 Identities=27% Similarity=0.316 Sum_probs=124.9
Q ss_pred cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCC-CCcCCC--CCCCCcccEEEeccc-CCcccCccccCCCCCCE
Q 038130 230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSK-LKRLPE--FSSSGKIEEIWLDGT-AIEELPSSIGCLSRLLY 305 (526)
Q Consensus 230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~-~~~lp~--~~~l~~L~~L~L~~~-~i~~lp~~i~~L~~L~~ 305 (526)
....|...+.++ ....++.... ++.|++|-+.++.. +..++. |..++.|++|||++| .+..+|.+|+.|.+|||
T Consensus 522 ~~~~rr~s~~~~-~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 522 WNSVRRMSLMNN-KIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hhheeEEEEecc-chhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 345566666663 3344444333 55788888888753 555554 777888899999944 45688999999999999
Q ss_pred EeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecccccc--ccccChhhhcccCCcceEEcc
Q 038130 306 LYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAA--KREVPSSIVGSNNNLYELSLD 383 (526)
Q Consensus 306 L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~--~~~~~~~l~~~~~~L~~L~l~ 383 (526)
|+++++. +..+|.++.+|..|.+|++..+.....+|..+..|.+|+ +|.+..... +......+..+ .+|+.+...
T Consensus 600 L~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr-~L~l~~s~~~~~~~~l~el~~L-e~L~~ls~~ 676 (889)
T KOG4658|consen 600 LDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR-VLRLPRSALSNDKLLLKELENL-EHLENLSIT 676 (889)
T ss_pred ccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhccccc-EEEeeccccccchhhHHhhhcc-cchhhheee
Confidence 9998865 668888888999999999888776677776677788888 887766431 12222223222 555555442
Q ss_pred cCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccC
Q 038130 384 RSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERL 455 (526)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l 455 (526)
. +........ .....+.+..+.+.+.++ .....+..+..+.+|+.|.+.+|...
T Consensus 677 ~----~s~~~~e~l--~~~~~L~~~~~~l~~~~~------------~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 677 I----SSVLLLEDL--LGMTRLRSLLQSLSIEGC------------SKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred c----chhHhHhhh--hhhHHHHHHhHhhhhccc------------ccceeecccccccCcceEEEEcCCCc
Confidence 1 111000000 001111122333443332 33344556778888888888888754
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.17 E-value=3.2e-12 Score=126.28 Aligned_cols=249 Identities=16% Similarity=0.110 Sum_probs=114.7
Q ss_pred cceEEEeccCCCC----CCCChhccccCCCcEEeeCCCCCCC------cCC-CCCCCCcccEEEecccCCc-ccCccccC
Q 038130 232 TLVILNLSEYVSL----NSLPAEILHLEFLKKLNLLGCSKLK------RLP-EFSSSGKIEEIWLDGTAIE-ELPSSIGC 299 (526)
Q Consensus 232 ~l~~L~l~~~~~~----~~lp~~~~~l~~L~~L~l~~~~~~~------~lp-~~~~l~~L~~L~L~~~~i~-~lp~~i~~ 299 (526)
.++.|+++++... ..++..+...+.|+.|+++++.... .++ .+..+.+|+.|+++++.+. ..+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 3566666664321 1233444455566666666643321 011 1444556666666666654 23333333
Q ss_pred CCC---CCEEeccCCccCc----ccCcCCCCC-CCCcEEeecCCCCCC----cCCCcccCcccccceeeccccccccc--
Q 038130 300 LSR---LLYLYLSDCKRLK----SLPSSLSQL-KSLKLLNLHGCSNLQ----RLPDDFGNLEASNSTLYAKGTAAKRE-- 365 (526)
Q Consensus 300 L~~---L~~L~L~~~~~~~----~lp~~i~~l-~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~~L~l~~~~~~~~-- 365 (526)
+.+ |++|++++|.... .+...+..+ ++|+.|++++|.... .++..+..++.|+ .|++++|.+.+.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~ 182 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLK-ELNLANNGIGDAGI 182 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcC-EEECcCCCCchHHH
Confidence 333 6666666665431 222233444 666666666655432 1223344455566 666666665322
Q ss_pred --cChhhhcccCCcceEEcccCCCCCCCCCCCC-CcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHh-cc
Q 038130 366 --VPSSIVGSNNNLYELSLDRSWGGDKQMGLSS-PITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESII-QL 441 (526)
Q Consensus 366 --~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~-~l 441 (526)
++..+... ++|+.|+++. |....... .....+... ++|++|++++|.++.. .+..+...+. ..
T Consensus 183 ~~l~~~l~~~-~~L~~L~L~~----n~i~~~~~~~l~~~~~~~-~~L~~L~ls~n~l~~~-------~~~~l~~~~~~~~ 249 (319)
T cd00116 183 RALAEGLKAN-CNLEVLDLNN----NGLTDEGASALAETLASL-KSLEVLNLGDNNLTDA-------GAAALASALLSPN 249 (319)
T ss_pred HHHHHHHHhC-CCCCEEeccC----CccChHHHHHHHHHhccc-CCCCEEecCCCcCchH-------HHHHHHHHHhccC
Confidence 22222233 4666666632 21100000 000001122 3677777776654320 1111111111 13
Q ss_pred CCCCEecccCCccC----CcCC---Ccccccccccccccccccc--------CCCC-CCCCEEeccCCC
Q 038130 442 SRLVVLNLNYCERL----QSLP---KLPFNLQGIFAHHCTALSS--------ISYK-SSTQLFDLSDNF 494 (526)
Q Consensus 442 ~~L~~L~L~~~~~l----~~lp---~~~~~L~~L~l~~c~~L~~--------l~~~-~~L~~L~l~~c~ 494 (526)
+.|++|++++|... ..+. +..++|+.++++++.--.. +... +.|++|+|.++|
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 56677777666422 0111 1124566666665432211 1223 678888888876
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.04 E-value=1.9e-11 Score=120.97 Aligned_cols=172 Identities=25% Similarity=0.332 Sum_probs=87.6
Q ss_pred CCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccc
Q 038130 274 FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNS 353 (526)
Q Consensus 274 ~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 353 (526)
+..+..|..|.|..|.+..+|..+++|..|.+|+|+.|. +..+|..++.|+ |+.|-+++ +.++.+|+.++.+..|.
T Consensus 94 ~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~- 169 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLA- 169 (722)
T ss_pred HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHH-
Confidence 444444444555555555555555555555555555544 334444444332 45554444 33455555555444455
Q ss_pred eeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCccc
Q 038130 354 TLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFER 433 (526)
Q Consensus 354 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~ 433 (526)
.|+.+.|.+ ..+|+.+..+ .+|+.|++..| ..... +..+. .. .|..||++.| ++..
T Consensus 170 ~ld~s~nei-~slpsql~~l-~slr~l~vrRn----~l~~l----p~El~-~L-pLi~lDfScN------------kis~ 225 (722)
T KOG0532|consen 170 HLDVSKNEI-QSLPSQLGYL-TSLRDLNVRRN----HLEDL----PEELC-SL-PLIRLDFSCN------------KISY 225 (722)
T ss_pred Hhhhhhhhh-hhchHHhhhH-HHHHHHHHhhh----hhhhC----CHHHh-CC-ceeeeecccC------------ceee
Confidence 555555555 5555555544 55555555322 10000 00011 11 5677777766 4455
Q ss_pred ccHHHhccCCCCEecccCCccCCcCCCc------ccccccccccccc
Q 038130 434 IPESIIQLSRLVVLNLNYCERLQSLPKL------PFNLQGIFAHHCT 474 (526)
Q Consensus 434 lp~~l~~l~~L~~L~L~~~~~l~~lp~~------~~~L~~L~l~~c~ 474 (526)
+|..+.+|+.|++|-|.+|+ +.+-|.- ..-.++|++.-|.
T Consensus 226 iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred cchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhcc
Confidence 67778888888888888774 4444421 1235666666663
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.00 E-value=4.5e-11 Score=113.34 Aligned_cols=125 Identities=26% Similarity=0.316 Sum_probs=89.3
Q ss_pred ceEEEeccCCCCCCCC-hhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEE-EecccCCcccCcc-ccCCCCCCEEec
Q 038130 233 LVILNLSEYVSLNSLP-AEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEI-WLDGTAIEELPSS-IGCLSRLLYLYL 308 (526)
Q Consensus 233 l~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L-~L~~~~i~~lp~~-i~~L~~L~~L~L 308 (526)
-..++|.. +.+..+| ..|+.+++||.|||++|.....-|+ |.++..+-.| .+++|.|+.+|.. |++|..|+.|.+
T Consensus 69 tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 35677777 4566666 5688999999999999765444454 8888888444 4556999999875 788999999988
Q ss_pred cCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCC-cccCcccccceeecccc
Q 038130 309 SDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPD-DFGNLEASNSTLYAKGT 360 (526)
Q Consensus 309 ~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~~L~l~~~ 360 (526)
.-|...-...+.+..+++|..|.+.+| ....++. .+..+..++ ++.+..|
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~-tlhlA~n 198 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIK-TLHLAQN 198 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccc-hHhhhcC
Confidence 877755555566777888888888774 3455554 466666666 6655444
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.87 E-value=6.5e-11 Score=112.28 Aligned_cols=105 Identities=26% Similarity=0.333 Sum_probs=81.3
Q ss_pred cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCcccC-ccccCCCCCCEE
Q 038130 230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELP-SSIGCLSRLLYL 306 (526)
Q Consensus 230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L 306 (526)
..++|.|||++|.....-|+.|..++.|..|-+-+++.++.+|. |.++..++.|.+.-|++..++ ..+..|++|..|
T Consensus 90 l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lL 169 (498)
T KOG4237|consen 90 LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLL 169 (498)
T ss_pred hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchh
Confidence 35789999999877777789999999999998888778999985 889999999988888888554 457888888888
Q ss_pred eccCCccCcccCc-CCCCCCCCcEEeecCC
Q 038130 307 YLSDCKRLKSLPS-SLSQLKSLKLLNLHGC 335 (526)
Q Consensus 307 ~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~ 335 (526)
.+..|. ...++. .+..+..++++.+..|
T Consensus 170 slyDn~-~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 170 SLYDNK-IQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred cccchh-hhhhccccccchhccchHhhhcC
Confidence 888765 344444 5566666666655443
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.76 E-value=5.9e-09 Score=91.52 Aligned_cols=61 Identities=30% Similarity=0.499 Sum_probs=8.8
Q ss_pred CCCCCCCCcccEEEecccCCcccCcccc-CCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecC
Q 038130 271 LPEFSSSGKIEEIWLDGTAIEELPSSIG-CLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHG 334 (526)
Q Consensus 271 lp~~~~l~~L~~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~ 334 (526)
.+.+.+..+++.|+|+++.|+.+. .++ .+.+|+.|++++|. +..++ .+..+++|++|++++
T Consensus 12 ~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~ 73 (175)
T PF14580_consen 12 IAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSN 73 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--S
T ss_pred cccccccccccccccccccccccc-chhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCC
Confidence 333444444555555555555442 233 34555555555554 22232 244445555555544
No 29
>PLN03150 hypothetical protein; Provisional
Probab=98.75 E-value=1.5e-08 Score=108.26 Aligned_cols=106 Identities=24% Similarity=0.342 Sum_probs=93.2
Q ss_pred cccEEEecccCCc-ccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeec
Q 038130 279 KIEEIWLDGTAIE-ELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYA 357 (526)
Q Consensus 279 ~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l 357 (526)
.++.|+|+++.+. .+|..++.+++|++|+|++|.+.+.+|..++.+++|+.|++++|...+.+|..+++|++|+ .|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~-~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR-ILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC-EEEC
Confidence 4678899999887 7899999999999999999988889999899999999999999888888999999999999 9999
Q ss_pred cccccccccChhhhcccCCcceEEcccC
Q 038130 358 KGTAAKREVPSSIVGSNNNLYELSLDRS 385 (526)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 385 (526)
++|.+.+.+|..+.....++..+++..|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCC
Confidence 9999988999988765566777888555
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.71 E-value=1.7e-08 Score=102.71 Aligned_cols=181 Identities=29% Similarity=0.351 Sum_probs=121.8
Q ss_pred ccccCCCcEEeeCCCCCCCcCCCCCCCC--cccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCc
Q 038130 251 ILHLEFLKKLNLLGCSKLKRLPEFSSSG--KIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLK 328 (526)
Q Consensus 251 ~~~l~~L~~L~l~~~~~~~~lp~~~~l~--~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 328 (526)
+..+..+..|++.++. +..++...... +|+.|++++|.+..+|..++.+++|+.|+++.|. +..+|...+.+++|+
T Consensus 112 ~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCcc-cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhh
Confidence 4456778888887754 55566544333 7888888888888887778888888888888876 566777666788888
Q ss_pred EEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCc
Q 038130 329 LLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTT 408 (526)
Q Consensus 329 ~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (526)
.|++++ +.+..+|..++.+..|. .+.+++|.. ...+..+... .++..|.+..|...+ . ...+..+ ++
T Consensus 190 ~L~ls~-N~i~~l~~~~~~~~~L~-~l~~~~N~~-~~~~~~~~~~-~~l~~l~l~~n~~~~----~----~~~~~~l-~~ 256 (394)
T COG4886 190 NLDLSG-NKISDLPPEIELLSALE-ELDLSNNSI-IELLSSLSNL-KNLSGLELSNNKLED----L----PESIGNL-SN 256 (394)
T ss_pred heeccC-CccccCchhhhhhhhhh-hhhhcCCcc-eecchhhhhc-ccccccccCCceeee----c----cchhccc-cc
Confidence 888888 45677777666666677 888888855 4555555555 666666653331111 0 1112233 37
Q ss_pred ccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCC
Q 038130 409 LTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLP 459 (526)
Q Consensus 409 L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 459 (526)
++.|++++|.++.+ +. ++.+.+|+.|+++++.....+|
T Consensus 257 l~~L~~s~n~i~~i------------~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 257 LETLDLSNNQISSI------------SS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cceecccccccccc------------cc-ccccCccCEEeccCccccccch
Confidence 88888888866553 32 6678888899888876555444
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.70 E-value=9.1e-10 Score=109.26 Aligned_cols=141 Identities=28% Similarity=0.405 Sum_probs=81.0
Q ss_pred EEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccC
Q 038130 236 LNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRL 314 (526)
Q Consensus 236 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~ 314 (526)
+.++. +.+..+|..+.++..|.+|+|+.|. +..+|. ++.+ -|++|-+++|+++.+|..++.+.+|..||.+.|. +
T Consensus 103 liLy~-n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i 178 (722)
T KOG0532|consen 103 LILYH-NCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-I 178 (722)
T ss_pred HHHHh-ccceecchhhhhhhHHHHhhhccch-hhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhh-h
Confidence 33443 3445566666666666666666643 444443 3322 3566666666666666666666666666666655 4
Q ss_pred cccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccC
Q 038130 315 KSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRS 385 (526)
Q Consensus 315 ~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 385 (526)
..+|..++.+.+|+.|.+.. +.+..+|+.++.| .|. .||++.|++ ..+|..+..+ +.|++|.|.+|
T Consensus 179 ~slpsql~~l~slr~l~vrR-n~l~~lp~El~~L-pLi-~lDfScNki-s~iPv~fr~m-~~Lq~l~LenN 244 (722)
T KOG0532|consen 179 QSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSL-PLI-RLDFSCNKI-SYLPVDFRKM-RHLQVLQLENN 244 (722)
T ss_pred hhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCC-cee-eeecccCce-eecchhhhhh-hhheeeeeccC
Confidence 45555566666666666665 3345555555544 355 666666666 5666666555 66666666443
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3.6e-09 Score=101.93 Aligned_cols=85 Identities=19% Similarity=0.153 Sum_probs=51.1
Q ss_pred cccCCCcEEeeCCCCCCCcCC---CCCCCCcccEEEecccCCc---ccCccccCCCCCCEEeccCCccCcccCcC-CCCC
Q 038130 252 LHLEFLKKLNLLGCSKLKRLP---EFSSSGKIEEIWLDGTAIE---ELPSSIGCLSRLLYLYLSDCKRLKSLPSS-LSQL 324 (526)
Q Consensus 252 ~~l~~L~~L~l~~~~~~~~lp---~~~~l~~L~~L~L~~~~i~---~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~l 324 (526)
+++++|+...|.++. +...+ ....+++++.|+|+.|-+. .+-.-+..|++|+.|+|+.|.+.-...+. -..+
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 467888888888754 44444 3567777888888877665 23334567778888888877643211111 1134
Q ss_pred CCCcEEeecCCCC
Q 038130 325 KSLKLLNLHGCSN 337 (526)
Q Consensus 325 ~~L~~L~l~~~~~ 337 (526)
++|+.|.++.|..
T Consensus 197 ~~lK~L~l~~CGl 209 (505)
T KOG3207|consen 197 SHLKQLVLNSCGL 209 (505)
T ss_pred hhhheEEeccCCC
Confidence 5555555555543
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=3.7e-09 Score=101.90 Aligned_cols=149 Identities=19% Similarity=0.164 Sum_probs=98.0
Q ss_pred CcceEEEeccCCCCCCCC--hhccccCCCcEEeeCCCCCCCcCC--C-CCCCCcccEEEecccCCcccCcc--ccCCCCC
Q 038130 231 NTLVILNLSEYVSLNSLP--AEILHLEFLKKLNLLGCSKLKRLP--E-FSSSGKIEEIWLDGTAIEELPSS--IGCLSRL 303 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~lp--~-~~~l~~L~~L~L~~~~i~~lp~~--i~~L~~L 303 (526)
..|+.+.+.++ .+...+ .....|++++.|||++|-.....+ . ...+++|+.|+|+.|.+...-.+ -..+.+|
T Consensus 121 kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 45677777764 333333 356789999999999975433333 2 57899999999999987633222 2467899
Q ss_pred CEEeccCCccCc-ccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccCh-hhhcccCCcceEE
Q 038130 304 LYLYLSDCKRLK-SLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPS-SIVGSNNNLYELS 381 (526)
Q Consensus 304 ~~L~L~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~-~l~~~~~~L~~L~ 381 (526)
+.|.|+.|.+.- .+-.....+++|..|++..|.....-.....-+..|+ .|++++|++ -..+. .....++.|+.|+
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~-~LdLs~N~l-i~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ-ELDLSNNNL-IDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh-hccccCCcc-cccccccccccccchhhhh
Confidence 999999998652 2222345688999999999754333323344556677 899999887 33331 2222236666666
Q ss_pred c
Q 038130 382 L 382 (526)
Q Consensus 382 l 382 (526)
+
T Consensus 278 l 278 (505)
T KOG3207|consen 278 L 278 (505)
T ss_pred c
Confidence 6
No 34
>PLN03150 hypothetical protein; Provisional
Probab=98.62 E-value=9.3e-08 Score=102.29 Aligned_cols=104 Identities=31% Similarity=0.401 Sum_probs=66.0
Q ss_pred CcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCc-ccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecC
Q 038130 257 LKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIE-ELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHG 334 (526)
Q Consensus 257 L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~ 334 (526)
++.|+|++|.....+|. +..+.+|+.|+|++|.+. .+|..++.+++|++|+|++|.+.+.+|..++++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55666666554444553 666666677777766665 6666677777777777777666666676666777777777776
Q ss_pred CCCCCcCCCcccCc-ccccceeeccccc
Q 038130 335 CSNLQRLPDDFGNL-EASNSTLYAKGTA 361 (526)
Q Consensus 335 ~~~~~~lp~~~~~l-~~L~~~L~l~~~~ 361 (526)
|...+.+|..++.+ ..+. .+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~-~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRA-SFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCc-eEEecCCc
Confidence 66666666665543 2334 55665554
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.61 E-value=6.2e-08 Score=98.66 Aligned_cols=182 Identities=27% Similarity=0.354 Sum_probs=140.2
Q ss_pred HHHhhcCcceEEEeccCCCCCCCChhccccC-CCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCccccCCCC
Q 038130 225 YEVLIVNTLVILNLSEYVSLNSLPAEILHLE-FLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPSSIGCLSR 302 (526)
Q Consensus 225 ~~~~~~~~l~~L~l~~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~ 302 (526)
........++.|++.+ +.+..++.....+. +|+.|++++|. +..+| .+..+++|+.|+++.|++..+|...+.+++
T Consensus 110 ~~~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~ 187 (394)
T COG4886 110 SELLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSN 187 (394)
T ss_pred hhhhcccceeEEecCC-cccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCchhhhhhhhhhhhhh
Confidence 3344446788999988 56677887677664 99999999964 66675 689999999999999999999998889999
Q ss_pred CCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEc
Q 038130 303 LLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSL 382 (526)
Q Consensus 303 L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 382 (526)
|+.|++++|. +..+|..+..+..|++|.+++|. ....+..+.++..+. .+.+.+|.+ ..++..+..+ ++++.|++
T Consensus 188 L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~-~l~l~~n~~-~~~~~~~~~l-~~l~~L~~ 262 (394)
T COG4886 188 LNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLS-GLELSNNKL-EDLPESIGNL-SNLETLDL 262 (394)
T ss_pred hhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhccccc-ccccCCcee-eeccchhccc-cccceecc
Confidence 9999999987 67788877777789999999864 445566788888888 888888887 5556666666 88999999
Q ss_pred ccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCC
Q 038130 383 DRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELP 423 (526)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp 423 (526)
+.| ....... +... .+++.|+++++.++..+
T Consensus 263 s~n----~i~~i~~-----~~~~-~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 263 SNN----QISSISS-----LGSL-TNLRELDLSGNSLSNAL 293 (394)
T ss_pred ccc----ccccccc-----cccc-CccCEEeccCccccccc
Confidence 544 2222222 2233 39999999999877643
No 36
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=98.60 E-value=5.3e-07 Score=77.24 Aligned_cols=120 Identities=37% Similarity=0.617 Sum_probs=93.0
Q ss_pred CCcEEEeccc-ccccCchHHHHHHHHHhCCCceEeeCCcCCCccchHHHHHHhhhceEE-EEecCCccchhhcHHHHHHH
Q 038130 13 RNDVFLSFKG-EDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIY-IIFSESDASSSWCLDELLKI 90 (526)
Q Consensus 13 ~~~~f~s~~~-~d~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l~~~~~~~~w~~i 90 (526)
+|||||||++ ++.+.-|..++..++...++.++.|+..+.+... .+|.+...++... +++...++.+.|...||..+
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 5999999999 6778889999999999999999999855443333 3888999899988 66678899999999999999
Q ss_pred HHHHhh-CCCeEEEEEeeccchhhhhccccHHHHHHHHHhhchh
Q 038130 91 VECRTN-YGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEERFPD 133 (526)
Q Consensus 91 ~~~~~~-~~~~il~~sY~~Lp~~lk~~cf~y~~~Fp~d~~i~~~ 133 (526)
.+.... ....|+|+.|+.-|...+.+=-.+-..++.++.-|++
T Consensus 80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~ 123 (140)
T smart00255 80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPE 123 (140)
T ss_pred HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCC
Confidence 988754 5668999999988765554333444555665555554
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.53 E-value=1e-07 Score=83.78 Aligned_cols=80 Identities=21% Similarity=0.267 Sum_probs=34.9
Q ss_pred cccEEEccCCCCCCCCCccCCCCcccccHHH-hccCCCCEecccCCccCCcCCCccccccccccccccccccCCCCCCCC
Q 038130 408 TLTSLYLNYCGILELPDSLEKNNFERIPESI-IQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQ 486 (526)
Q Consensus 408 ~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l-~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~~~~~L~ 486 (526)
+|+.|++++|.++ .+++.+ ..+++|++|.+++|. |.+...+..+..+++|+
T Consensus 65 ~L~~L~L~~N~I~------------~i~~~l~~~lp~L~~L~L~~N~----------------I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 65 RLKTLDLSNNRIS------------SISEGLDKNLPNLQELYLSNNK----------------ISDLNELEPLSSLPKLR 116 (175)
T ss_dssp T--EEE--SS---------------S-CHHHHHH-TT--EEE-TTS-------------------SCCCCGGGGG-TT--
T ss_pred hhhhcccCCCCCC------------ccccchHHhCCcCCEEECcCCc----------------CCChHHhHHHHcCCCcc
Confidence 7777777776543 333344 357777777777772 22233344445566677
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHhhhHHh
Q 038130 487 LFDLSDNFKLDRNAVRIIVEDALQDIQLM 515 (526)
Q Consensus 487 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~ 515 (526)
.|++.+||--.....+..+...+|+++++
T Consensus 117 ~L~L~~NPv~~~~~YR~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 117 VLSLEGNPVCEKKNYRLFVIYKLPSLKVL 145 (175)
T ss_dssp EEE-TT-GGGGSTTHHHHHHHH-TT-SEE
T ss_pred eeeccCCcccchhhHHHHHHHHcChhhee
Confidence 77777776666666666666666666655
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.52 E-value=3.6e-09 Score=101.46 Aligned_cols=153 Identities=21% Similarity=0.233 Sum_probs=101.3
Q ss_pred cccccceeecccc-ccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCcc
Q 038130 348 LEASNSTLYAKGT-AAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSL 426 (526)
Q Consensus 348 l~~L~~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l 426 (526)
+..|+ .++.+++ .++......++..+.+|+.|-+ .+|..+...+... +....+.|+.+++..|....
T Consensus 293 c~~lq-~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l----~~c~~fsd~~ft~--l~rn~~~Le~l~~e~~~~~~----- 360 (483)
T KOG4341|consen 293 CHALQ-VLCYSSCTDITDEVLWALGQHCHNLQVLEL----SGCQQFSDRGFTM--LGRNCPHLERLDLEECGLIT----- 360 (483)
T ss_pred hhHhh-hhcccCCCCCchHHHHHHhcCCCceEEEec----cccchhhhhhhhh--hhcCChhhhhhcccccceeh-----
Confidence 44555 6666554 2323333445556677777777 6776554444333 22334477777777765321
Q ss_pred CCCCcccccHHHhccCCCCEecccCCccCCcC-----C---Ccccccccccccccccccc-----CCCCCCCCEEeccCC
Q 038130 427 EKNNFERIPESIIQLSRLVVLNLNYCERLQSL-----P---KLPFNLQGIFAHHCTALSS-----ISYKSSTQLFDLSDN 493 (526)
Q Consensus 427 ~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~l-----p---~~~~~L~~L~l~~c~~L~~-----l~~~~~L~~L~l~~c 493 (526)
. ..+-..-.+++.|+.|.+++|..+... . .....|..+.+.+|+.++. +..+++|+.+++.+|
T Consensus 361 ---d-~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 361 ---D-GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ---h-hhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 0 012222346899999999999765544 1 2345788999999987654 557999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhhHHhhh
Q 038130 494 FKLDRNAVRIIVEDALQDIQLMAA 517 (526)
Q Consensus 494 ~~l~~~~~~~~~~~~~~~~~~~~~ 517 (526)
..+++.+...+.+ ..|++.|++.
T Consensus 437 q~vtk~~i~~~~~-~lp~i~v~a~ 459 (483)
T KOG4341|consen 437 QDVTKEAISRFAT-HLPNIKVHAY 459 (483)
T ss_pred hhhhhhhhHHHHh-hCccceehhh
Confidence 9999999988855 4889999875
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.52 E-value=3e-08 Score=91.19 Aligned_cols=68 Identities=22% Similarity=0.228 Sum_probs=36.5
Q ss_pred hHHHHhh-cCcceEEEeccCCC--------CCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCc
Q 038130 223 DIYEVLI-VNTLVILNLSEYVS--------LNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIE 291 (526)
Q Consensus 223 ~~~~~~~-~~~l~~L~l~~~~~--------~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~ 291 (526)
|..|++. .+.+++|.+++... -..+|-.+.-+++|..+.++.|. .+.+.+ ...-+.|+.+...++-+.
T Consensus 173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~~~ 250 (490)
T KOG1259|consen 173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTTIQ 250 (490)
T ss_pred chHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeeccccc
Confidence 3444433 24567777765321 12234445557788888888875 233333 233445666766655544
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.45 E-value=2.5e-08 Score=91.65 Aligned_cols=120 Identities=21% Similarity=0.220 Sum_probs=54.4
Q ss_pred CCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeec
Q 038130 255 EFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLH 333 (526)
Q Consensus 255 ~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~ 333 (526)
+.|.+|||++|. ++.+. +..-.+.+|.|+++.|.|..+.. +..|++|+.|||++|. +..+-.+-.+|.++++|.++
T Consensus 284 q~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehh
Confidence 445555555532 22232 23444455555555555554433 4555555555555543 22232222344555555555
Q ss_pred CCCCCCcCCCcccCcccccceeeccccccccccC--hhhhcccCCcceEEc
Q 038130 334 GCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVP--SSIVGSNNNLYELSL 382 (526)
Q Consensus 334 ~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~--~~l~~~~~~L~~L~l 382 (526)
+| .++.+ .++++|-+|. .||+++|++ ..+. .+|+++ +.|+.|.+
T Consensus 361 ~N-~iE~L-SGL~KLYSLv-nLDl~~N~I-e~ldeV~~IG~L-PCLE~l~L 406 (490)
T KOG1259|consen 361 QN-KIETL-SGLRKLYSLV-NLDLSSNQI-EELDEVNHIGNL-PCLETLRL 406 (490)
T ss_pred hh-hHhhh-hhhHhhhhhe-eccccccch-hhHHHhcccccc-cHHHHHhh
Confidence 42 22222 3344555555 555555544 3322 234444 55555555
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=4.3e-07 Score=65.32 Aligned_cols=57 Identities=28% Similarity=0.397 Sum_probs=34.2
Q ss_pred cccEEEecccCCcccCc-cccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCC
Q 038130 279 KIEEIWLDGTAIEELPS-SIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGC 335 (526)
Q Consensus 279 ~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~ 335 (526)
+|++|++++|.++.+|. .+.++++|++|++++|.+...-|..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45666666666666653 4566666666666666544444445566666666666664
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.35 E-value=1.5e-06 Score=85.82 Aligned_cols=157 Identities=24% Similarity=0.430 Sum_probs=77.5
Q ss_pred cccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecc
Q 038130 279 KIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAK 358 (526)
Q Consensus 279 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~ 358 (526)
+++.|+++++.++.+|. + ..+|+.|.+++|..+..+|..+ ..+|++|++++|..+..+|.. |+ .|++.
T Consensus 53 ~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le-~L~L~ 120 (426)
T PRK15386 53 ASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VR-SLEIK 120 (426)
T ss_pred CCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cc-eEEeC
Confidence 34444444444555541 1 1356666776666566666543 346777777776666666654 33 44444
Q ss_pred ccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHH
Q 038130 359 GTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESI 438 (526)
Q Consensus 359 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l 438 (526)
++.. .. +..++++|+.|.+.. ....... ..+ ..++++|+.|++++|....+| ..+|
T Consensus 121 ~n~~-~~----L~~LPssLk~L~I~~----~n~~~~~---~lp-~~LPsSLk~L~Is~c~~i~LP--------~~LP--- 176 (426)
T PRK15386 121 GSAT-DS----IKNVPNGLTSLSINS----YNPENQA---RID-NLISPSLKTLSLTGCSNIILP--------EKLP--- 176 (426)
T ss_pred CCCC-cc----cccCcchHhheeccc----ccccccc---ccc-cccCCcccEEEecCCCcccCc--------cccc---
Confidence 4332 11 122334566666621 1100000 000 124458888888887644332 1233
Q ss_pred hccCCCCEecccCCccC-CcCC--Cccccccccccccccc
Q 038130 439 IQLSRLVVLNLNYCERL-QSLP--KLPFNLQGIFAHHCTA 475 (526)
Q Consensus 439 ~~l~~L~~L~L~~~~~l-~~lp--~~~~~L~~L~l~~c~~ 475 (526)
.+|+.|.++.+... -.++ .+++++ .|.+.+|..
T Consensus 177 ---~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lk 212 (426)
T PRK15386 177 ---ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVL 212 (426)
T ss_pred ---ccCcEEEecccccccccCccccccccc-Eechhhhcc
Confidence 47788887765211 1111 234556 666666643
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.29 E-value=3.2e-08 Score=93.04 Aligned_cols=184 Identities=16% Similarity=0.070 Sum_probs=96.9
Q ss_pred CCCCCCEEeccCCccCcccCcC----CCCCCCCcEEeecCCCCCCc-------------CCCcccCcccccceeeccccc
Q 038130 299 CLSRLLYLYLSDCKRLKSLPSS----LSQLKSLKLLNLHGCSNLQR-------------LPDDFGNLEASNSTLYAKGTA 361 (526)
Q Consensus 299 ~L~~L~~L~L~~~~~~~~lp~~----i~~l~~L~~L~l~~~~~~~~-------------lp~~~~~l~~L~~~L~l~~~~ 361 (526)
..++|++||||.|.+....+.. +.+++.|++|+|.+|..... .-.-.+.-+.|+ .+....|.
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lr-v~i~~rNr 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLR-VFICGRNR 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceE-EEEeeccc
Confidence 3345666666655543322221 34455666666665432110 001122334566 77777776
Q ss_pred cccccCh----hhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHH
Q 038130 362 AKREVPS----SIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPES 437 (526)
Q Consensus 362 ~~~~~~~----~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~ 437 (526)
+ ..-+. ..+...+.|+.+.+..|..+..... .....+.. +++|+.|+|..|-++.- .-..+...
T Consensus 169 l-en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~---al~eal~~-~~~LevLdl~DNtft~e-------gs~~Laka 236 (382)
T KOG1909|consen 169 L-ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVT---ALAEALEH-CPHLEVLDLRDNTFTLE-------GSVALAKA 236 (382)
T ss_pred c-ccccHHHHHHHHHhccccceEEEecccccCchhH---HHHHHHHh-CCcceeeecccchhhhH-------HHHHHHHH
Confidence 5 33332 1223336777777765522222110 00111222 34888888888865431 11134455
Q ss_pred HhccCCCCEecccCCccC--------CcCCCcccccccccccccccccc--------CCCCCCCCEEeccCCCC
Q 038130 438 IIQLSRLVVLNLNYCERL--------QSLPKLPFNLQGIFAHHCTALSS--------ISYKSSTQLFDLSDNFK 495 (526)
Q Consensus 438 l~~l~~L~~L~L~~~~~l--------~~lp~~~~~L~~L~l~~c~~L~~--------l~~~~~L~~L~l~~c~~ 495 (526)
+..+++|+.|++++|..- ..+....|+|+.|.+.+|..-.. +...|.|..|+|++|.-
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 667788888888888421 11223456888888777643322 12488899999999954
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=3.8e-08 Score=90.44 Aligned_cols=82 Identities=17% Similarity=0.152 Sum_probs=51.6
Q ss_pred ccEEEecccCCc--ccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCC--cccCccccccee
Q 038130 280 IEEIWLDGTAIE--ELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPD--DFGNLEASNSTL 355 (526)
Q Consensus 280 L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~~L 355 (526)
|++|||+...|+ .+-.-+..+.+|+.|.+.++.+...+...|.+-.+|+.|+++.|+..+.... -+.+++.|. .|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~-~L 265 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD-EL 265 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh-hc
Confidence 667777766666 3444456677777777877766555666677777788888877765544221 244555555 55
Q ss_pred ecccccc
Q 038130 356 YAKGTAA 362 (526)
Q Consensus 356 ~l~~~~~ 362 (526)
+++.|.+
T Consensus 266 NlsWc~l 272 (419)
T KOG2120|consen 266 NLSWCFL 272 (419)
T ss_pred CchHhhc
Confidence 5555544
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.19 E-value=5e-07 Score=85.13 Aligned_cols=211 Identities=17% Similarity=0.176 Sum_probs=127.7
Q ss_pred CCCCcccEEEecccCCc-----ccCccccCCCCCCEEeccCCccCc----ccCc-------CCCCCCCCcEEeecCCCCC
Q 038130 275 SSSGKIEEIWLDGTAIE-----ELPSSIGCLSRLLYLYLSDCKRLK----SLPS-------SLSQLKSLKLLNLHGCSNL 338 (526)
Q Consensus 275 ~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~----~lp~-------~i~~l~~L~~L~l~~~~~~ 338 (526)
.....+.+++|++|.+. .+-..+.+.++|+.-++++ -+++ .+|+ .+-..++|+.|+|++|-..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 33444555666655554 2334455666777777765 2233 2333 2445779999999998765
Q ss_pred CcCCCc----ccCcccccceeeccccccccccChhh-------------hcccCCcceEEcccCCCCCCCCCCCCCccc-
Q 038130 339 QRLPDD----FGNLEASNSTLYAKGTAAKREVPSSI-------------VGSNNNLYELSLDRSWGGDKQMGLSSPITL- 400 (526)
Q Consensus 339 ~~lp~~----~~~l~~L~~~L~l~~~~~~~~~~~~l-------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~- 400 (526)
...++. +.++..|+ +|.+.+|++ +...... ....++|+++....|..... +....
T Consensus 106 ~~g~~~l~~ll~s~~~L~-eL~L~N~Gl-g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~-----ga~~~A 178 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLE-ELYLNNCGL-GPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG-----GATALA 178 (382)
T ss_pred ccchHHHHHHHHhccCHH-HHhhhcCCC-ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc-----cHHHHH
Confidence 555544 45677899 999999988 4322211 11236788888755421111 11000
Q ss_pred CcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCC--------cCCCcccccccccccc
Q 038130 401 PLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQ--------SLPKLPFNLQGIFAHH 472 (526)
Q Consensus 401 ~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~--------~lp~~~~~L~~L~l~~ 472 (526)
......+.|+.+.+..|.+.. ..++.+...+..+++|+.|+|++|..-. .+|. .++|+.|++.+
T Consensus 179 ~~~~~~~~leevr~~qN~I~~-------eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s-~~~L~El~l~d 250 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRP-------EGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS-WPHLRELNLGD 250 (382)
T ss_pred HHHHhccccceEEEecccccC-------chhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc-cchheeecccc
Confidence 011223488999998887643 2445566778899999999999995321 2232 34899999998
Q ss_pred cccccc--------C-CCCCCCCEEeccCCCCCCHHHHH
Q 038130 473 CTALSS--------I-SYKSSTQLFDLSDNFKLDRNAVR 502 (526)
Q Consensus 473 c~~L~~--------l-~~~~~L~~L~l~~c~~l~~~~~~ 502 (526)
|--=.. + ...|+|+.|.+.+| .++..+..
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~ 288 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAAL 288 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHH
Confidence 842211 1 13889999999998 34444433
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.10 E-value=3e-06 Score=60.89 Aligned_cols=61 Identities=30% Similarity=0.280 Sum_probs=40.6
Q ss_pred CCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecccccc
Q 038130 301 SRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAA 362 (526)
Q Consensus 301 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~ 362 (526)
++|++|++++|.+...-+..+..+++|++|++++|.....-|..|.++++|+ .|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~-~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLR-YLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTES-EEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCC-EEeCcCCcC
Confidence 4677888887764433334667788888888887554444445677777777 777777753
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.00 E-value=2.1e-05 Score=77.81 Aligned_cols=60 Identities=22% Similarity=0.368 Sum_probs=32.8
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEeccc-CCcccCc
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGT-AIEELPS 295 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~-~i~~lp~ 295 (526)
..++.|++++| .+..+|. + ..+|++|.+++|..+..+|... ..+|++|+++++ .+..+|.
T Consensus 52 ~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 52 RASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred cCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccc
Confidence 55667777765 5556662 1 2346777776666665555411 234555555544 4444443
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.90 E-value=2.7e-06 Score=86.97 Aligned_cols=219 Identities=24% Similarity=0.245 Sum_probs=118.2
Q ss_pred ccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcE
Q 038130 251 ILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKL 329 (526)
Q Consensus 251 ~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 329 (526)
+..+++|..|++.+|. +..+.. +..+.+|++|++++|.|+.+. .+..+..|+.|++.+|. +..++. +..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDISG-LESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccc-hhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhccC-Cccchhhhc
Confidence 5557778888887753 555555 777788888888888877664 46667778888888776 333433 555777777
Q ss_pred EeecCCCCCCcCCCc-ccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCc
Q 038130 330 LNLHGCSNLQRLPDD-FGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTT 408 (526)
Q Consensus 330 L~l~~~~~~~~lp~~-~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (526)
+++++|.... +... ...+..++ .+.+.+|.+ ..+.. +... ..+..+++..| ......+.... ... +
T Consensus 167 l~l~~n~i~~-ie~~~~~~~~~l~-~l~l~~n~i-~~i~~-~~~~-~~l~~~~l~~n----~i~~~~~l~~~---~~~-~ 233 (414)
T KOG0531|consen 167 LDLSYNRIVD-IENDELSELISLE-ELDLGGNSI-REIEG-LDLL-KKLVLLSLLDN----KISKLEGLNEL---VML-H 233 (414)
T ss_pred ccCCcchhhh-hhhhhhhhccchH-HHhccCCch-hcccc-hHHH-HHHHHhhcccc----cceeccCcccc---hhH-H
Confidence 8877754332 2221 35566666 777777766 22221 1111 22333333221 11111110000 000 3
Q ss_pred ccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCC--cccccccccccccccc------cc--
Q 038130 409 LTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK--LPFNLQGIFAHHCTAL------SS-- 478 (526)
Q Consensus 409 L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~--~~~~L~~L~l~~c~~L------~~-- 478 (526)
|+.+++++|.+.. ++..+..+.++..|++.++. +..+.. ..+.+..+.....+.. +.
T Consensus 234 L~~l~l~~n~i~~------------~~~~~~~~~~l~~l~~~~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (414)
T KOG0531|consen 234 LRELYLSGNRISR------------SPEGLENLKNLPVLDLSSNR-ISNLEGLERLPKLSELWLNDNKLALSEAISQEYI 300 (414)
T ss_pred HHHHhcccCcccc------------ccccccccccccccchhhcc-ccccccccccchHHHhccCcchhcchhhhhcccc
Confidence 7888888876543 33455667788888888764 222211 1222222222222111 11
Q ss_pred CCCCCCCCEEeccCCCCCCHH
Q 038130 479 ISYKSSTQLFDLSDNFKLDRN 499 (526)
Q Consensus 479 l~~~~~L~~L~l~~c~~l~~~ 499 (526)
.+..+.++.+.+..+|.-...
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 301 TSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred ccccccccccccccCcccccc
Confidence 234677777888887755533
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.5e-05 Score=52.62 Aligned_cols=36 Identities=31% Similarity=0.399 Sum_probs=26.4
Q ss_pred CcccEEEecccCCcccCccccCCCCCCEEeccCCcc
Q 038130 278 GKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKR 313 (526)
Q Consensus 278 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~ 313 (526)
++|++|++++|.|+.+|..+++|++|++|++++|.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 357788888888888877788888888888888763
No 50
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=97.86 E-value=2.5e-05 Score=66.93 Aligned_cols=99 Identities=33% Similarity=0.589 Sum_probs=83.9
Q ss_pred EEEecccccccCchHHHHHHHHHhC--CCceEeeC-CcCCCccchHHHHHHhhhceEE-EEecCCccchhhcHHHHHHHH
Q 038130 16 VFLSFKGEDTRDNFTSHLYSALSQK--CIETFIGN-DLKRGDEISQSLGDAVEVSSIY-IIFSESDASSSWCLDELLKIV 91 (526)
Q Consensus 16 ~f~s~~~~d~~~~f~~~~~~~l~~~--~~~~~~~~-~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l~~~~~~~~w~~i~ 91 (526)
|||||++.+..+.|.+++..+|... +++.+.++ +..+|..+...|.+....+-.+ ++++..++.+.|+..|...+.
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 7999999433556999999999999 99999998 8999999999999999999999 677789999999999999999
Q ss_pred HHHhhC--CCeEEEEEeeccchhhh
Q 038130 92 ECRTNY--GQIVVAVCYRVEPSHVR 114 (526)
Q Consensus 92 ~~~~~~--~~~il~~sY~~Lp~~lk 114 (526)
++.... ...|+|+.|+.-++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~ 105 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVR 105 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCH
T ss_pred hhccccccccceeeEeccCChhhcC
Confidence 998654 36799998888777776
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.76 E-value=1.2e-06 Score=90.03 Aligned_cols=98 Identities=23% Similarity=0.248 Sum_probs=51.4
Q ss_pred ccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCC-cccCcccccceeecc
Q 038130 280 IEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPD-DFGNLEASNSTLYAK 358 (526)
Q Consensus 280 L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~~L~l~ 358 (526)
|...+.++|.+..+..++.-++.|+.|+|+.|++.. .- .+..|++|+||||++| .+..+|. +...+. |+ .|.++
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~-~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQ-LLNLR 240 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccc-hhccccccchhhhh-he-eeeec
Confidence 344455566666555666666666666666665332 22 3556666666666663 3444443 122222 55 66666
Q ss_pred ccccccccChhhhcccCCcceEEcccC
Q 038130 359 GTAAKREVPSSIVGSNNNLYELSLDRS 385 (526)
Q Consensus 359 ~~~~~~~~~~~l~~~~~~L~~L~l~~~ 385 (526)
+|.+ ..+ .++.++ .+|+.|+++.|
T Consensus 241 nN~l-~tL-~gie~L-ksL~~LDlsyN 264 (1096)
T KOG1859|consen 241 NNAL-TTL-RGIENL-KSLYGLDLSYN 264 (1096)
T ss_pred ccHH-Hhh-hhHHhh-hhhhccchhHh
Confidence 6655 222 223344 56666666443
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.74 E-value=7.2e-07 Score=85.98 Aligned_cols=258 Identities=18% Similarity=0.193 Sum_probs=163.8
Q ss_pred CcceEEEeccCCCCCCC--ChhccccCCCcEEeeCCCCCCCcCC--C-CCCCCcccEEEecc-cCCcc--cCccccCCCC
Q 038130 231 NTLVILNLSEYVSLNSL--PAEILHLEFLKKLNLLGCSKLKRLP--E-FSSSGKIEEIWLDG-TAIEE--LPSSIGCLSR 302 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~l--p~~~~~l~~L~~L~l~~~~~~~~lp--~-~~~l~~L~~L~L~~-~~i~~--lp~~i~~L~~ 302 (526)
..++.|.++++.....- -....++++++.|.+.+|..+++.. . -..+.+|++|++.. ..++. +-.-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 46788999988766543 3445679999999999998766533 2 24567789999885 56662 2223457789
Q ss_pred CCEEeccCCccCcc--cCcCCCCCCCCcEEeecCCCCCCc--CCCcccCcccccceeeccccc-cccccChhhhcccCCc
Q 038130 303 LLYLYLSDCKRLKS--LPSSLSQLKSLKLLNLHGCSNLQR--LPDDFGNLEASNSTLYAKGTA-AKREVPSSIVGSNNNL 377 (526)
Q Consensus 303 L~~L~L~~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~~L~l~~~~-~~~~~~~~l~~~~~~L 377 (526)
|.||++++|.-... +-.-...+..++.+.+.+|...+. +-..-+.+..+. .+++..|. ++..-.-.+...+..|
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~-~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEIL-KLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhh-ccchhhhccccchHHHHHhhhhhHh
Confidence 99999999874432 111234556677777777754321 100011222233 55554543 2222222344555788
Q ss_pred ceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCc
Q 038130 378 YELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQS 457 (526)
Q Consensus 378 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~ 457 (526)
+.|.. .+|......... .+..-.++|+.|.++.|+- +++..++.+. .+.+.|+.+++..|.....
T Consensus 297 q~l~~----s~~t~~~d~~l~--aLg~~~~~L~~l~l~~c~~------fsd~~ft~l~---rn~~~Le~l~~e~~~~~~d 361 (483)
T KOG4341|consen 297 QVLCY----SSCTDITDEVLW--ALGQHCHNLQVLELSGCQQ------FSDRGFTMLG---RNCPHLERLDLEECGLITD 361 (483)
T ss_pred hhhcc----cCCCCCchHHHH--HHhcCCCceEEEeccccch------hhhhhhhhhh---cCChhhhhhcccccceehh
Confidence 88888 666553332221 2344456999999999972 1222332222 3678999999999864322
Q ss_pred -----CCCccccccccccccccccccCC---------CCCCCCEEeccCCCCCCHHHHHHH
Q 038130 458 -----LPKLPFNLQGIFAHHCTALSSIS---------YKSSTQLFDLSDNFKLDRNAVRII 504 (526)
Q Consensus 458 -----lp~~~~~L~~L~l~~c~~L~~l~---------~~~~L~~L~l~~c~~l~~~~~~~~ 504 (526)
+...-+.|+.|.+++|...+... .+..|..+.+++||.+++...+.+
T Consensus 362 ~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l 422 (483)
T KOG4341|consen 362 GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL 422 (483)
T ss_pred hhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH
Confidence 23345689999999998877652 478899999999999999888776
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.70 E-value=1.6e-05 Score=81.39 Aligned_cols=129 Identities=23% Similarity=0.261 Sum_probs=94.2
Q ss_pred HhhcCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEE
Q 038130 227 VLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYL 306 (526)
Q Consensus 227 ~~~~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 306 (526)
+....+++.|++.+| .+..+...+..+++|++|++++| .++.+..+..+..|+.|++++|.|+.++. +..+..|+.+
T Consensus 91 l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFN-KITKLEGLSTLTLLKELNLSGNLISDISG-LESLKSLKLL 167 (414)
T ss_pred cccccceeeeecccc-chhhcccchhhhhcchheecccc-ccccccchhhccchhhheeccCcchhccC-Cccchhhhcc
Confidence 444567899999984 55555554677999999999995 58888888888889999999999998753 6669999999
Q ss_pred eccCCccCcccCcC-CCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecccccc
Q 038130 307 YLSDCKRLKSLPSS-LSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAA 362 (526)
Q Consensus 307 ~L~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~ 362 (526)
++++|.+.. +... ...+.+|+.+++.+|.... ..++..+..+. .+++..|.+
T Consensus 168 ~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~-~~~l~~n~i 220 (414)
T KOG0531|consen 168 DLSYNRIVD-IENDELSELISLEELDLGGNSIRE--IEGLDLLKKLV-LLSLLDNKI 220 (414)
T ss_pred cCCcchhhh-hhhhhhhhccchHHHhccCCchhc--ccchHHHHHHH-Hhhcccccc
Confidence 999987543 4332 4678899999998864322 22333444444 445556555
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.68 E-value=1.3e-06 Score=89.76 Aligned_cols=110 Identities=21% Similarity=0.137 Sum_probs=60.8
Q ss_pred CCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcC-CCCCCCCcEEeecCCCCCCcCCCcccCccccc
Q 038130 274 FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSS-LSQLKSLKLLNLHGCSNLQRLPDDFGNLEASN 352 (526)
Q Consensus 274 ~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 352 (526)
+.-++.++.|+|+.|.+..+- .+..|++|++|||++|. +..+|.- ...+ .|+.|.+++| .++.+ .++.+|++|+
T Consensus 183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN-~l~tL-~gie~LksL~ 257 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNN-ALTTL-RGIENLKSLY 257 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeeccc-HHHhh-hhHHhhhhhh
Confidence 444556677777777776654 56677777777777765 4445541 1122 3777777663 33433 3566777777
Q ss_pred ceeeccccccccccChhhhcccCCcceEEcccCCCCC
Q 038130 353 STLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGD 389 (526)
Q Consensus 353 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 389 (526)
.||+++|-+.+.---.....+..|+.|.+..|...|
T Consensus 258 -~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 258 -GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred -ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 777777655222111111122566666665554333
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.60 E-value=2.2e-05 Score=84.09 Aligned_cols=150 Identities=22% Similarity=0.200 Sum_probs=103.1
Q ss_pred CcceEEEeccCCCCC-CCChhcc-ccCCCcEEeeCCCCCCCc-CC-CCCCCCcccEEEecccCCcccCccccCCCCCCEE
Q 038130 231 NTLVILNLSEYVSLN-SLPAEIL-HLEFLKKLNLLGCSKLKR-LP-EFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYL 306 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~-~lp~~~~-~l~~L~~L~l~~~~~~~~-lp-~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 306 (526)
.+++.|++++..... ..|..++ .||.|+.|.+++-..... +. -..++++|+.||+++++++.+ ..+++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 567899998854432 3333333 589999999988332111 22 267889999999999999988 789999999999
Q ss_pred eccCCccCc-ccCcCCCCCCCCcEEeecCCCCCCcC--C----CcccCcccccceeeccccccccccChhhhcccCCcce
Q 038130 307 YLSDCKRLK-SLPSSLSQLKSLKLLNLHGCSNLQRL--P----DDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYE 379 (526)
Q Consensus 307 ~L~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~l--p----~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~ 379 (526)
.+.+=.+.. .--..+.+|++|++||+|........ . +.-..|+.|+ .||.+++.+...+.+.+....++|+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLr-fLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELR-FLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCcccc-EEecCCcchhHHHHHHHHHhCccHhh
Confidence 998633221 11124678999999999974433221 1 1123477899 99999988877776666554477776
Q ss_pred EEc
Q 038130 380 LSL 382 (526)
Q Consensus 380 L~l 382 (526)
+..
T Consensus 280 i~~ 282 (699)
T KOG3665|consen 280 IAA 282 (699)
T ss_pred hhh
Confidence 655
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.40 E-value=0.00017 Score=47.51 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=27.0
Q ss_pred CCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccC
Q 038130 255 EFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELP 294 (526)
Q Consensus 255 ~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp 294 (526)
++|++|++++|. ++.+|. +..+++|++|++++|.|+.++
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 367788887764 556666 778888888888888777654
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=5.4e-05 Score=70.17 Aligned_cols=82 Identities=18% Similarity=0.162 Sum_probs=39.4
Q ss_pred ccCCCcEEeeCCCCCCCcCC---C-CCCCCcccEEEecccCCcccCccc-cCCCCCCEEeccCCccC-cccCcCCCCCCC
Q 038130 253 HLEFLKKLNLLGCSKLKRLP---E-FSSSGKIEEIWLDGTAIEELPSSI-GCLSRLLYLYLSDCKRL-KSLPSSLSQLKS 326 (526)
Q Consensus 253 ~l~~L~~L~l~~~~~~~~lp---~-~~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~~-~~lp~~i~~l~~ 326 (526)
.++.++.|||.+|. +.... . +.+++.|++|+|++|++...-.+. -.+.+|++|-|.+..+. +.....+..++.
T Consensus 69 ~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred Hhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 35566666666643 22211 1 445666666666666554211111 23446666666554321 112223445555
Q ss_pred CcEEeecCC
Q 038130 327 LKLLNLHGC 335 (526)
Q Consensus 327 L~~L~l~~~ 335 (526)
++.|.++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 556655554
No 58
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=2.9e-05 Score=71.95 Aligned_cols=154 Identities=19% Similarity=0.167 Sum_probs=83.2
Q ss_pred CCcEEeecCCCCCCc-CCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCccc
Q 038130 326 SLKLLNLHGCSNLQR-LPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDG 404 (526)
Q Consensus 326 ~L~~L~l~~~~~~~~-lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 404 (526)
.||+||++....... +-..+..+..|+ .|.+.++.+...+...+.+. .+|+.|++ ..|..+...+... +..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk-~lSlEg~~LdD~I~~~iAkN-~~L~~lnl----sm~sG~t~n~~~l--l~~ 257 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLK-NLSLEGLRLDDPIVNTIAKN-SNLVRLNL----SMCSGFTENALQL--LLS 257 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhh-hccccccccCcHHHHHHhcc-ccceeecc----ccccccchhHHHH--HHH
Confidence 477777776332211 222245566677 77777777766666677766 77777777 5555433322111 112
Q ss_pred ccCcccEEEccCCCCCCCCCccCCCCcccccHHHhc-cCCCCEecccCCccC-C-----cCCCccccccccccccccccc
Q 038130 405 LHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQ-LSRLVVLNLNYCERL-Q-----SLPKLPFNLQGIFAHHCTALS 477 (526)
Q Consensus 405 ~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~-l~~L~~L~L~~~~~l-~-----~lp~~~~~L~~L~l~~c~~L~ 477 (526)
.++.|.+|+|+||.+.. . .+-..+.+ -++|..|+|++|..- + .+..--|+|.+|++++|..++
T Consensus 258 scs~L~~LNlsWc~l~~--------~--~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFT--------E--KVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred hhhhHhhcCchHhhccc--------h--hhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence 23477777777776443 0 01111222 256777777776421 1 111123566666666666665
Q ss_pred cCC-----CCCCCCEEeccCCCCCC
Q 038130 478 SIS-----YKSSTQLFDLSDNFKLD 497 (526)
Q Consensus 478 ~l~-----~~~~L~~L~l~~c~~l~ 497 (526)
.-. .++.|++|.++.|-.+.
T Consensus 328 ~~~~~~~~kf~~L~~lSlsRCY~i~ 352 (419)
T KOG2120|consen 328 NDCFQEFFKFNYLQHLSLSRCYDII 352 (419)
T ss_pred chHHHHHHhcchheeeehhhhcCCC
Confidence 421 36667777777665443
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.24 E-value=4.9e-05 Score=62.38 Aligned_cols=91 Identities=18% Similarity=0.242 Sum_probs=59.8
Q ss_pred ChhhHHHHhhcCcceEEEeccCCCCCCCChhcc-ccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccc
Q 038130 220 HHKDIYEVLIVNTLVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSI 297 (526)
Q Consensus 220 ~~~~~~~~~~~~~l~~L~l~~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i 297 (526)
.++-++++.....++..++++ +.++.+|..|. .++.+++|++++| .+..+|. +..++.||.|+++.|.+...|..|
T Consensus 42 i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi 119 (177)
T KOG4579|consen 42 IADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVI 119 (177)
T ss_pred HHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHH
Confidence 444555566666677777777 45566665543 4557777777774 3555664 667777777777777777777766
Q ss_pred cCCCCCCEEeccCCc
Q 038130 298 GCLSRLLYLYLSDCK 312 (526)
Q Consensus 298 ~~L~~L~~L~L~~~~ 312 (526)
..|.+|-+|+..+|.
T Consensus 120 ~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 120 APLIKLDMLDSPENA 134 (177)
T ss_pred HHHHhHHHhcCCCCc
Confidence 667777777776654
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.16 E-value=3.1e-05 Score=63.51 Aligned_cols=79 Identities=22% Similarity=0.298 Sum_probs=37.0
Q ss_pred cCCCcEEeeCCCCCCCcCCC-C-CCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEe
Q 038130 254 LEFLKKLNLLGCSKLKRLPE-F-SSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLN 331 (526)
Q Consensus 254 l~~L~~L~l~~~~~~~~lp~-~-~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 331 (526)
...|...+|++|. ++.+|. + ...+....|++++|.|..+|..+..++.|+.|+++.|. +...|..+..|.+|-.|+
T Consensus 52 ~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 52 GYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred CceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhc
Confidence 3444445555532 333432 2 22224455555555555555555555555555555544 233444444444444444
Q ss_pred ecC
Q 038130 332 LHG 334 (526)
Q Consensus 332 l~~ 334 (526)
..+
T Consensus 130 s~~ 132 (177)
T KOG4579|consen 130 SPE 132 (177)
T ss_pred CCC
Confidence 444
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.04 E-value=0.0005 Score=73.90 Aligned_cols=142 Identities=15% Similarity=0.133 Sum_probs=82.1
Q ss_pred cccceeeccccc-cccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCC
Q 038130 350 ASNSTLYAKGTA-AKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEK 428 (526)
Q Consensus 350 ~L~~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~ 428 (526)
+|+ +|++++.. +...-|..++.++|+|++|.+.+....+.. -..+..-.|+|..||+|+++++.
T Consensus 123 nL~-~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-------F~~lc~sFpNL~sLDIS~TnI~n------- 187 (699)
T KOG3665|consen 123 NLQ-HLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-------FSQLCASFPNLRSLDISGTNISN------- 187 (699)
T ss_pred hhh-hcCccccchhhccHHHHHhhhCcccceEEecCceecchh-------HHHHhhccCccceeecCCCCccC-------
Confidence 455 66665542 223445566777788888888432111110 00112223489999998886543
Q ss_pred CCcccccHHHhccCCCCEecccCCccCCcCC---C--ccccccccccccccccccC----------CCCCCCCEEeccCC
Q 038130 429 NNFERIPESIIQLSRLVVLNLNYCERLQSLP---K--LPFNLQGIFAHHCTALSSI----------SYKSSTQLFDLSDN 493 (526)
Q Consensus 429 ~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp---~--~~~~L~~L~l~~c~~L~~l----------~~~~~L~~L~l~~c 493 (526)
+ .++++|++|+.|.+.+-. ...-. . .+.+|+.|+++.-.....- ..+|.|+.||.++.
T Consensus 188 -----l-~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 188 -----L-SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred -----c-HHHhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 2 477788888888877653 22222 1 1457788888753322221 14899999999974
Q ss_pred CCCCHHHHHHHHHHHHhhhHHh
Q 038130 494 FKLDRNAVRIIVEDALQDIQLM 515 (526)
Q Consensus 494 ~~l~~~~~~~~~~~~~~~~~~~ 515 (526)
.+++...+.+++ +.|+++-+
T Consensus 261 -di~~~~le~ll~-sH~~L~~i 280 (699)
T KOG3665|consen 261 -DINEEILEELLN-SHPNLQQI 280 (699)
T ss_pred -chhHHHHHHHHH-hCccHhhh
Confidence 666666666655 44444443
No 62
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=97.02 E-value=0.00058 Score=54.71 Aligned_cols=93 Identities=27% Similarity=0.474 Sum_probs=69.0
Q ss_pred EEEecccccccCchHHHHHHHHHhCCCceEeeCCcCCCccchHHHHHHhhhceEE-EEecCCccchhhcHHHHHHHHHHH
Q 038130 16 VFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIY-IIFSESDASSSWCLDELLKIVECR 94 (526)
Q Consensus 16 ~f~s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l~~~~~~~~w~~i~~~~ 94 (526)
|||||+.+| .-+...+...|...|+.+|.|.+++.|+++...|.+...+.-.. +++...++.+.|...||..+.+
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~-- 76 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK-- 76 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence 799999999 55999999999999999999988888888888888888887777 5556778888899889888843
Q ss_pred hhCCCeEEEEEee--ccchhhh
Q 038130 95 TNYGQIVVAVCYR--VEPSHVR 114 (526)
Q Consensus 95 ~~~~~~il~~sY~--~Lp~~lk 114 (526)
....|+|+..+ .+|..++
T Consensus 77 --~~~~iipv~~~~~~~p~~l~ 96 (102)
T PF13676_consen 77 --RGKPIIPVRLDPCELPGPLR 96 (102)
T ss_dssp --TSESEEEEECSGGGS-GGGG
T ss_pred --CCCEEEEEEECCcCCCHHHH
Confidence 22358888543 4565554
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.0011 Score=61.82 Aligned_cols=207 Identities=18% Similarity=0.149 Sum_probs=107.3
Q ss_pred cCCCcEEeeCCCCCCCcCCC---C-CCCCcccEEEecccCCc---ccCccccCCCCCCEEeccCCccCcccCcCCCCCCC
Q 038130 254 LEFLKKLNLLGCSKLKRLPE---F-SSSGKIEEIWLDGTAIE---ELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKS 326 (526)
Q Consensus 254 l~~L~~L~l~~~~~~~~lp~---~-~~l~~L~~L~L~~~~i~---~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~ 326 (526)
...+..|.+.+|. +....+ + .....++.|||.+|.|+ ++-.-+.+|++|++|+|+.|.+...+-..-..+.+
T Consensus 44 ~ra~ellvln~~~-id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 44 LRALELLVLNGSI-IDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred ccchhhheecCCC-CCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 4445566666653 333222 3 24567799999999987 45455788999999999988643322111024568
Q ss_pred CcEEeecCCCCC-CcCCCcccCcccccceeeccccccccccC---hhhhcccCCcceEEcccCCCCCCCCCCCCCcccCc
Q 038130 327 LKLLNLHGCSNL-QRLPDDFGNLEASNSTLYAKGTAAKREVP---SSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPL 402 (526)
Q Consensus 327 L~~L~l~~~~~~-~~lp~~~~~l~~L~~~L~l~~~~~~~~~~---~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 402 (526)
|++|-+.+.... ......+..++.++ .|+++.|++ ..+- ..+..+.+.+++|.+ .+|....... ...+
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vt-elHmS~N~~-rq~n~Dd~c~e~~s~~v~tlh~----~~c~~~~w~~--~~~l 194 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVT-ELHMSDNSL-RQLNLDDNCIEDWSTEVLTLHQ----LPCLEQLWLN--KNKL 194 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhh-hhhhccchh-hhhccccccccccchhhhhhhc----CCcHHHHHHH--HHhH
Confidence 888888762211 12223355566666 676666633 1111 011112234555555 3332111110 1113
Q ss_pred ccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCC-----ccccccccccccccccc
Q 038130 403 DGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK-----LPFNLQGIFAHHCTALS 477 (526)
Q Consensus 403 ~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~-----~~~~L~~L~l~~c~~L~ 477 (526)
....|++..+.+..|.+.... -......+|.+--|+|+.+ .++++.. -++.|..|.+.+.|-..
T Consensus 195 ~r~Fpnv~sv~v~e~PlK~~s----------~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 195 SRIFPNVNSVFVCEGPLKTES----------SEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred HhhcccchheeeecCcccchh----------hcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccc
Confidence 344456777777666554311 0112233455555666654 3443332 25677777777776666
Q ss_pred cCC
Q 038130 478 SIS 480 (526)
Q Consensus 478 ~l~ 480 (526)
.+.
T Consensus 264 ~l~ 266 (418)
T KOG2982|consen 264 PLR 266 (418)
T ss_pred ccc
Confidence 654
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.51 E-value=0.0016 Score=59.85 Aligned_cols=188 Identities=16% Similarity=0.118 Sum_probs=104.7
Q ss_pred cccCCCcEEeeCCCCCCCcC----C-CCCCCCcccEEEecccCCc----ccCc-------cccCCCCCCEEeccCCccCc
Q 038130 252 LHLEFLKKLNLLGCSKLKRL----P-EFSSSGKIEEIWLDGTAIE----ELPS-------SIGCLSRLLYLYLSDCKRLK 315 (526)
Q Consensus 252 ~~l~~L~~L~l~~~~~~~~l----p-~~~~l~~L~~L~L~~~~i~----~lp~-------~i~~L~~L~~L~L~~~~~~~ 315 (526)
.-+..+..++||+|.+.+.- . .+.+-.+|+.-+++.--.. .+|+ .+-++++|+..+|+.|.+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34678899999998765432 1 2566677888877743221 3443 35678999999999998776
Q ss_pred ccCcC----CCCCCCCcEEeecCCCCCCcCCC-cc-------------cCcccccceeeccccccccccChh-----hhc
Q 038130 316 SLPSS----LSQLKSLKLLNLHGCSNLQRLPD-DF-------------GNLEASNSTLYAKGTAAKREVPSS-----IVG 372 (526)
Q Consensus 316 ~lp~~----i~~l~~L~~L~l~~~~~~~~lp~-~~-------------~~l~~L~~~L~l~~~~~~~~~~~~-----l~~ 372 (526)
..|+. |++-+.|.||.+++|. ++.+.. .+ .+-+.|+ ......|.+ ...+.. +..
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le-~vicgrNRl-engs~~~~a~~l~s 183 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLE-VVICGRNRL-ENGSKELSAALLES 183 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCce-EEEeccchh-ccCcHHHHHHHHHh
Confidence 66654 5677889999998863 322211 11 2334455 666666655 333321 222
Q ss_pred ccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCC
Q 038130 373 SNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYC 452 (526)
Q Consensus 373 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~ 452 (526)
. .+|+++.+..|......+... ....+. .+.+|+.|+|..|-++-. .-..+...+...+.|+.|.+.+|
T Consensus 184 h-~~lk~vki~qNgIrpegv~~L--~~~gl~-y~~~LevLDlqDNtft~~-------gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 184 H-ENLKEVKIQQNGIRPEGVTML--AFLGLF-YSHSLEVLDLQDNTFTLE-------GSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred h-cCceeEEeeecCcCcchhHHH--HHHHHH-HhCcceeeeccccchhhh-------hHHHHHHHhcccchhhhccccch
Confidence 2 567777775542111111000 000011 223777888777755421 00012233445566778888777
Q ss_pred c
Q 038130 453 E 453 (526)
Q Consensus 453 ~ 453 (526)
-
T Consensus 253 l 253 (388)
T COG5238 253 L 253 (388)
T ss_pred h
Confidence 3
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.44 E-value=0.0058 Score=53.91 Aligned_cols=54 Identities=26% Similarity=0.270 Sum_probs=26.0
Q ss_pred cEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCC
Q 038130 281 EEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGC 335 (526)
Q Consensus 281 ~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~ 335 (526)
..+||++|.+..++ .+..++.|.+|.+++|.++..-|.--..+++|+.|.+.+|
T Consensus 45 d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 45 DAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 45555555555443 2445555555555555533333322223445555555553
No 66
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.28 E-value=0.0055 Score=54.04 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=64.9
Q ss_pred CCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccC-CCCCCEEeccCCccC--cccCcCCCCCCCCcEEe
Q 038130 255 EFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGC-LSRLLYLYLSDCKRL--KSLPSSLSQLKSLKLLN 331 (526)
Q Consensus 255 ~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~-L~~L~~L~L~~~~~~--~~lp~~i~~l~~L~~L~ 331 (526)
.....+||++| .+..++.+..+..|..|.+++|.|+.+-..+.. +++|..|.|.+|.+. +.+- .+..+++|++|.
T Consensus 42 d~~d~iDLtdN-dl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~-pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDN-DLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD-PLASCPKLEYLT 119 (233)
T ss_pred cccceeccccc-chhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc-hhccCCccceee
Confidence 45567777775 366667777777778888888888776655543 456788888776532 2222 255677778877
Q ss_pred ecCCCCCCcC---CCcccCcccccceeecccc
Q 038130 332 LHGCSNLQRL---PDDFGNLEASNSTLYAKGT 360 (526)
Q Consensus 332 l~~~~~~~~l---p~~~~~l~~L~~~L~l~~~ 360 (526)
+-+|.....- -..+.++++|+ .||+..-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~-~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLR-TLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcce-Eeehhhh
Confidence 7765432211 12366677777 7777653
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.24 E-value=0.0017 Score=59.71 Aligned_cols=208 Identities=19% Similarity=0.192 Sum_probs=123.6
Q ss_pred hcCcceEEEeccCCCCCC----CChhccccCCCcEEeeCCCCCCCc------------CCCCCCCCcccEEEecccCCc-
Q 038130 229 IVNTLVILNLSEYVSLNS----LPAEILHLEFLKKLNLLGCSKLKR------------LPEFSSSGKIEEIWLDGTAIE- 291 (526)
Q Consensus 229 ~~~~l~~L~l~~~~~~~~----lp~~~~~l~~L~~L~l~~~~~~~~------------lp~~~~l~~L~~L~L~~~~i~- 291 (526)
....++.+++++|..-+. +...+.+-++|++.+++.-. ... +|.+.++++|+..+||.|.+.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 356788999999765443 33445667889999888632 211 234678899999999999887
Q ss_pred ccCc----cccCCCCCCEEeccCCccCcccCc--------------CCCCCCCCcEEeecCCCCCCcCCCc-----ccCc
Q 038130 292 ELPS----SIGCLSRLLYLYLSDCKRLKSLPS--------------SLSQLKSLKLLNLHGCSNLQRLPDD-----FGNL 348 (526)
Q Consensus 292 ~lp~----~i~~L~~L~~L~L~~~~~~~~lp~--------------~i~~l~~L~~L~l~~~~~~~~lp~~-----~~~l 348 (526)
..|+ .|..-+.|.+|.+++|.. +.+.. -+.+-+.|++.....|. +...|.. +..-
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh 184 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESH 184 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhh
Confidence 4443 366778899999998873 32211 13456788888887743 3333321 2222
Q ss_pred ccccceeeccccccccc-----cChhhhcccCCcceEEcccCCCCCCCCCCCCCcccC--cccccCcccEEEccCCCCCC
Q 038130 349 EASNSTLYAKGTAAKRE-----VPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLP--LDGLHTTLTSLYLNYCGILE 421 (526)
Q Consensus 349 ~~L~~~L~l~~~~~~~~-----~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~ 421 (526)
..|. .+.+..|.+-.. +-.+++.. .+|+.|++..|.. +..+...+. +... +.|+.|.+..|-++.
T Consensus 185 ~~lk-~vki~qNgIrpegv~~L~~~gl~y~-~~LevLDlqDNtf-----t~~gS~~La~al~~W-~~lrEL~lnDClls~ 256 (388)
T COG5238 185 ENLK-EVKIQQNGIRPEGVTMLAFLGLFYS-HSLEVLDLQDNTF-----TLEGSRYLADALCEW-NLLRELRLNDCLLSN 256 (388)
T ss_pred cCce-eEEeeecCcCcchhHHHHHHHHHHh-Ccceeeeccccch-----hhhhHHHHHHHhccc-chhhhccccchhhcc
Confidence 3455 777777766211 11233444 8899999965511 111111100 1112 268889988887543
Q ss_pred CCCccCCCCcccccHHHh--ccCCCCEecccCCcc
Q 038130 422 LPDSLEKNNFERIPESII--QLSRLVVLNLNYCER 454 (526)
Q Consensus 422 lp~~l~~~~l~~lp~~l~--~l~~L~~L~L~~~~~ 454 (526)
-+...+-..+. ..|+|..|...+|..
T Consensus 257 -------~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 257 -------EGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred -------ccHHHHHHHhhhhcCCCccccccchhhh
Confidence 12222222222 368888888888853
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.97 E-value=0.0032 Score=57.75 Aligned_cols=84 Identities=26% Similarity=0.315 Sum_probs=53.0
Q ss_pred ccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEeccc--CCc-ccCccccCCCCCCEEeccCCccC--cccCcCCCCCC
Q 038130 251 ILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGT--AIE-ELPSSIGCLSRLLYLYLSDCKRL--KSLPSSLSQLK 325 (526)
Q Consensus 251 ~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~~~--~~lp~~i~~l~ 325 (526)
...+..|+.|.+.++ .++.+..+..+++|++|.++.| ++. .++....++++|++|++++|++. ..++. +..+.
T Consensus 39 ~d~~~~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELE 116 (260)
T ss_pred cccccchhhhhhhcc-ceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhc
Confidence 344566666766664 3555566777778888888877 444 55555566688888888887632 12222 44566
Q ss_pred CCcEEeecCCC
Q 038130 326 SLKLLNLHGCS 336 (526)
Q Consensus 326 ~L~~L~l~~~~ 336 (526)
+|..|++.+|.
T Consensus 117 nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 117 NLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCC
Confidence 66677776654
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.90 E-value=0.0053 Score=56.41 Aligned_cols=57 Identities=26% Similarity=0.263 Sum_probs=26.1
Q ss_pred CcccEEEecccCCcccCccccCCCCCCEEeccCC--ccCcccCcCCCCCCCCcEEeecCC
Q 038130 278 GKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDC--KRLKSLPSSLSQLKSLKLLNLHGC 335 (526)
Q Consensus 278 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~--~~~~~lp~~i~~l~~L~~L~l~~~ 335 (526)
..|+.|++.+..++++- .+-.|++|++|.++.| +....++-...++++|++|++++|
T Consensus 43 ~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred cchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 33444444443333221 2334555666666555 333333333344456666666554
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.85 E-value=0.0044 Score=33.94 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=10.2
Q ss_pred ccEEEecccCCcccCcccc
Q 038130 280 IEEIWLDGTAIEELPSSIG 298 (526)
Q Consensus 280 L~~L~L~~~~i~~lp~~i~ 298 (526)
|++|++++|.++.+|.+|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555555544
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.82 E-value=0.0019 Score=67.45 Aligned_cols=182 Identities=21% Similarity=0.210 Sum_probs=93.1
Q ss_pred CCCCCEEeccCCccCcc--cCcCCCCCCCCcEEeecCC-CCCCcCC----CcccCcccccceeeccccc-cccccChhhh
Q 038130 300 LSRLLYLYLSDCKRLKS--LPSSLSQLKSLKLLNLHGC-SNLQRLP----DDFGNLEASNSTLYAKGTA-AKREVPSSIV 371 (526)
Q Consensus 300 L~~L~~L~L~~~~~~~~--lp~~i~~l~~L~~L~l~~~-~~~~~lp----~~~~~l~~L~~~L~l~~~~-~~~~~~~~l~ 371 (526)
++.|+.|.+.+|..... +-......++|+.|++++| ......+ .....+..|+ .++++.+. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~-~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLK-SLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcC-ccchhhhhccCchhHHHHH
Confidence 45666666665544333 2222445666666666652 2222111 1122334555 66776665 4334444455
Q ss_pred cccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccC
Q 038130 372 GSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNY 451 (526)
Q Consensus 372 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~ 451 (526)
..+++|+.|.+ ..|..+...+... +...+++|++|+|++|.... -..+.....++++|+.|.+..
T Consensus 266 ~~c~~L~~L~l----~~c~~lt~~gl~~--i~~~~~~L~~L~l~~c~~~~---------d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 266 SRCPNLETLSL----SNCSNLTDEGLVS--IAERCPSLRELDLSGCHGLT---------DSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hhCCCcceEcc----CCCCccchhHHHH--HHHhcCcccEEeeecCccch---------HHHHHHHHHhCcchhhhhhhh
Confidence 54678888887 6665433333222 22334478899988886321 012333344567766666554
Q ss_pred Ccc---CCcCC-----Ccc-ccccccccccccccccCCC----CCCCC-EEeccCCCCCC
Q 038130 452 CER---LQSLP-----KLP-FNLQGIFAHHCTALSSISY----KSSTQ-LFDLSDNFKLD 497 (526)
Q Consensus 452 ~~~---l~~lp-----~~~-~~L~~L~l~~c~~L~~l~~----~~~L~-~L~l~~c~~l~ 497 (526)
+.. ++.+- ... -.+..+.+.+|+.++.+.. ..... .+.+.+||+++
T Consensus 331 ~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~ 390 (482)
T KOG1947|consen 331 LNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT 390 (482)
T ss_pred cCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc
Confidence 432 22211 112 2566666667777666541 22222 57778888884
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.96 E-value=0.00095 Score=61.53 Aligned_cols=97 Identities=23% Similarity=0.282 Sum_probs=68.0
Q ss_pred cceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCc--cccCCCCCCEEecc
Q 038130 232 TLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPS--SIGCLSRLLYLYLS 309 (526)
Q Consensus 232 ~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~ 309 (526)
+.+.|+..+|. +..+.- ...++.|++|.|+-| .+..+..+..+.+|+.|+|..|.|..+.+ .+.+|++|+.|.|.
T Consensus 20 ~vkKLNcwg~~-L~DIsi-c~kMp~lEVLsLSvN-kIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 20 NVKKLNCWGCG-LDDISI-CEKMPLLEVLSLSVN-KISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HhhhhcccCCC-ccHHHH-HHhcccceeEEeecc-ccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 44667777743 333332 346888999999885 46777778888889999999888886643 46788888888888
Q ss_pred CCccCcccCcC-----CCCCCCCcEEe
Q 038130 310 DCKRLKSLPSS-----LSQLKSLKLLN 331 (526)
Q Consensus 310 ~~~~~~~lp~~-----i~~l~~L~~L~ 331 (526)
.|...+.-+.. +.-|++|+.||
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 87765554432 45577777775
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.95 E-value=0.0015 Score=60.31 Aligned_cols=64 Identities=25% Similarity=0.320 Sum_probs=32.3
Q ss_pred hhHHHHhhcCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC---CCCCCCcccEEEeccc
Q 038130 222 KDIYEVLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP---EFSSSGKIEEIWLDGT 288 (526)
Q Consensus 222 ~~~~~~~~~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp---~~~~l~~L~~L~L~~~ 288 (526)
+|+.-......+++|.|+- +.+..+.. +..|++|+.|.|..|. +..+. .+.++++||.|+|..|
T Consensus 32 ~DIsic~kMp~lEVLsLSv-NkIssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 32 DDISICEKMPLLEVLSLSV-NKISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred cHHHHHHhcccceeEEeec-cccccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccC
Confidence 3444444445556666665 23334433 4456666666665543 33332 2455555666666544
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.27 E-value=0.022 Score=31.11 Aligned_cols=21 Identities=48% Similarity=0.543 Sum_probs=13.6
Q ss_pred CCCEEeccCCccCcccCcCCCC
Q 038130 302 RLLYLYLSDCKRLKSLPSSLSQ 323 (526)
Q Consensus 302 ~L~~L~L~~~~~~~~lp~~i~~ 323 (526)
+|++|++++|.+. .+|.++++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677777777544 67766544
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=94.27 E-value=0.062 Score=30.70 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=21.2
Q ss_pred CCCCCEEeccCCCCCCHHHHHHHH
Q 038130 482 KSSTQLFDLSDNFKLDRNAVRIIV 505 (526)
Q Consensus 482 ~~~L~~L~l~~c~~l~~~~~~~~~ 505 (526)
+++|++|+|++|++++..+...+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 578999999999999999987764
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.23 E-value=0.029 Score=28.46 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=8.1
Q ss_pred cccEEEccCCCCCCCC
Q 038130 408 TLTSLYLNYCGILELP 423 (526)
Q Consensus 408 ~L~~L~L~~~~~~~lp 423 (526)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 6777777777655543
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.01 E-value=0.24 Score=41.15 Aligned_cols=99 Identities=15% Similarity=0.289 Sum_probs=40.7
Q ss_pred ccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCcccCc-cccCCCCCCEEeccCCccCcccC-cCCCCCCC
Q 038130 251 ILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLSDCKRLKSLP-SSLSQLKS 326 (526)
Q Consensus 251 ~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~ 326 (526)
|.++.+|+.+.+.. .+..++. +.++.+|+.+.+..+ +..++. .+.++.+|+.+.+.. . ...++ ..+..+++
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-c-cccccccccccccc
Confidence 45566677766653 2444442 555656666666653 444443 355555666666654 2 22222 23444666
Q ss_pred CcEEeecCCCCCCcCC-CcccCcccccceeecc
Q 038130 327 LKLLNLHGCSNLQRLP-DDFGNLEASNSTLYAK 358 (526)
Q Consensus 327 L~~L~l~~~~~~~~lp-~~~~~l~~L~~~L~l~ 358 (526)
|+.+.+..+ +..++ ..+.+. .++ .+.+.
T Consensus 83 l~~i~~~~~--~~~i~~~~f~~~-~l~-~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN--ITEIGSSSFSNC-NLK-EINIP 111 (129)
T ss_dssp ECEEEETTT---BEEHTTTTTT--T---EEE-T
T ss_pred ccccccCcc--ccEEchhhhcCC-Cce-EEEEC
Confidence 666666542 22222 234444 455 55444
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.71 E-value=0.021 Score=59.58 Aligned_cols=166 Identities=21% Similarity=0.186 Sum_probs=95.3
Q ss_pred CCCCCcEEeecCCCCCCc--CCCcccCcccccceeecccc-ccccccC---hhhhcccCCcceEEcccCCCCCCCCCCCC
Q 038130 323 QLKSLKLLNLHGCSNLQR--LPDDFGNLEASNSTLYAKGT-AAKREVP---SSIVGSNNNLYELSLDRSWGGDKQMGLSS 396 (526)
Q Consensus 323 ~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~~L~l~~~-~~~~~~~---~~l~~~~~~L~~L~l~~~~~~~~~~~~~~ 396 (526)
..+.|+.|.+..|..+.. +-......+.|+ .|+++++ ......+ ..+...+.+|+.|++ ..|..+...+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l----~~~~~isd~~ 260 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLE-ELDLSGCCLLITLSPLLLLLLLSICRKLKSLDL----SGCGLVTDIG 260 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhh-eecccCcccccccchhHhhhhhhhcCCcCccch----hhhhccCchh
Confidence 478899999998877665 334456777888 8998873 2111122 234455588899999 4444322222
Q ss_pred CcccCcccccCcccEEEccCCC-CCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcC--C---Ccccccccccc
Q 038130 397 PITLPLDGLHTTLTSLYLNYCG-ILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSL--P---KLPFNLQGIFA 470 (526)
Q Consensus 397 ~~~~~~~~~~~~L~~L~L~~~~-~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~l--p---~~~~~L~~L~l 470 (526)
... +...+++|+.|.+.+|. ++. ..+-.....+++|++|+|++|..+..- . ...++|+.|.+
T Consensus 261 l~~--l~~~c~~L~~L~l~~c~~lt~----------~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 261 LSA--LASRCPNLETLSLSNCSNLTD----------EGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HHH--HHhhCCCcceEccCCCCccch----------hHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 111 22335599999988876 222 123334457899999999999765321 1 11334444433
Q ss_pred cc---ccccccCC-----C-C-CCCCEEeccCCCCCCHHHHHHHH
Q 038130 471 HH---CTALSSIS-----Y-K-SSTQLFDLSDNFKLDRNAVRIIV 505 (526)
Q Consensus 471 ~~---c~~L~~l~-----~-~-~~L~~L~l~~c~~l~~~~~~~~~ 505 (526)
.. |+.++.+. . . -.+..+.+.+|++++........
T Consensus 329 ~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 329 LSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred hhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 33 33344432 1 1 15666666667666666655543
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.70 E-value=0.014 Score=51.53 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=69.6
Q ss_pred cccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCc-----CCCccccccccccccccccccCC--
Q 038130 408 TLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQS-----LPKLPFNLQGIFAHHCTALSSIS-- 480 (526)
Q Consensus 408 ~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~-----lp~~~~~L~~L~l~~c~~L~~l~-- 480 (526)
.++.++-+++.+... + -+.+..++.++.|.+.+|+.+.. +-...++|+.|+|++|+.+++-.
T Consensus 102 ~IeaVDAsds~I~~e-------G----le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~ 170 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYE-------G----LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA 170 (221)
T ss_pred eEEEEecCCchHHHH-------H----HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH
Confidence 577788777754320 0 12455778888889999985443 44567899999999999888754
Q ss_pred ---CCCCCCEEeccCCCCCCHHH-HHHHHHHHHhhhHHhh
Q 038130 481 ---YKSSTQLFDLSDNFKLDRNA-VRIIVEDALQDIQLMA 516 (526)
Q Consensus 481 ---~~~~L~~L~l~~c~~l~~~~-~~~~~~~~~~~~~~~~ 516 (526)
.+++|+.|.|.+-|-+.... ....++.++|+.++..
T Consensus 171 ~L~~lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~~ 210 (221)
T KOG3864|consen 171 CLLKLKNLRRLHLYDLPYVANLELVQRQLEEALPKCDIVG 210 (221)
T ss_pred HHHHhhhhHHHHhcCchhhhchHHHHHHHHHhCcccceec
Confidence 58899999999987665443 3445677788877764
No 80
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.74 E-value=0.078 Score=26.86 Aligned_cols=12 Identities=8% Similarity=0.230 Sum_probs=3.5
Q ss_pred ccEEEecccCCc
Q 038130 280 IEEIWLDGTAIE 291 (526)
Q Consensus 280 L~~L~L~~~~i~ 291 (526)
|+.|++++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 333334333333
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.72 E-value=0.069 Score=47.33 Aligned_cols=63 Identities=24% Similarity=0.212 Sum_probs=37.6
Q ss_pred CCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccc-cHHHhccCCCCEecccCCc
Q 038130 375 NNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERI-PESIIQLSRLVVLNLNYCE 453 (526)
Q Consensus 375 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~l-p~~l~~l~~L~~L~L~~~~ 453 (526)
+.++.|.+ ..|..+..-.... +.+..++|+.|+|++|. +++.- -.++..+++|+.|.|.+-+
T Consensus 125 ~~i~~l~l----~~ck~~dD~~L~~--l~~~~~~L~~L~lsgC~-----------rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 125 RSIKSLSL----ANCKYFDDWCLER--LGGLAPSLQDLDLSGCP-----------RITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred chhhhhee----ccccchhhHHHHH--hcccccchheeeccCCC-----------eechhHHHHHHHhhhhHHHHhcCch
Confidence 45555555 5555443322211 22344589999999885 44422 2477788899988888765
Q ss_pred c
Q 038130 454 R 454 (526)
Q Consensus 454 ~ 454 (526)
.
T Consensus 188 ~ 188 (221)
T KOG3864|consen 188 Y 188 (221)
T ss_pred h
Confidence 3
No 82
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=88.83 E-value=1.9 Score=35.55 Aligned_cols=95 Identities=17% Similarity=0.290 Sum_probs=54.2
Q ss_pred cceEEEeccCCCCCCCC-hhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCcccCc-cccCCCCCCEEe
Q 038130 232 TLVILNLSEYVSLNSLP-AEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLY 307 (526)
Q Consensus 232 ~l~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~ 307 (526)
.++.+.+.. .+..++ ..|..++.|+.+.+.++ +..++. +..+..++.+.+.. .+..++. .+..+.+|+.++
T Consensus 13 ~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 13 NLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp T--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 567777764 344444 44777889999999873 666664 77887899999976 5555554 467789999999
Q ss_pred ccCCccCcccC-cCCCCCCCCcEEeecC
Q 038130 308 LSDCKRLKSLP-SSLSQLKSLKLLNLHG 334 (526)
Q Consensus 308 L~~~~~~~~lp-~~i~~l~~L~~L~l~~ 334 (526)
+..+ ...++ ..+.+. +|+.+.+..
T Consensus 88 ~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 88 IPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cCcc--ccEEchhhhcCC-CceEEEECC
Confidence 9764 33333 345666 888888765
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.43 E-value=0.025 Score=51.06 Aligned_cols=80 Identities=18% Similarity=0.098 Sum_probs=34.4
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS 309 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 309 (526)
...++||++.+. +..+...++-+..|..|+++.+. +..+| ++.+...++.+++..|..+..|.+++.+++++++++.
T Consensus 42 kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 42 KRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred ceeeeehhhhhH-HHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence 344445544422 22222233334444444444422 23333 2444444444444444444555555555555555554
Q ss_pred CCc
Q 038130 310 DCK 312 (526)
Q Consensus 310 ~~~ 312 (526)
++.
T Consensus 120 ~~~ 122 (326)
T KOG0473|consen 120 KTE 122 (326)
T ss_pred cCc
Confidence 443
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.20 E-value=0.51 Score=26.76 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=10.2
Q ss_pred CcccEEEecccCCcccCcc
Q 038130 278 GKIEEIWLDGTAIEELPSS 296 (526)
Q Consensus 278 ~~L~~L~L~~~~i~~lp~~ 296 (526)
.+|++|+|++|.|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555543
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.20 E-value=0.51 Score=26.76 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=10.2
Q ss_pred CcccEEEecccCCcccCcc
Q 038130 278 GKIEEIWLDGTAIEELPSS 296 (526)
Q Consensus 278 ~~L~~L~L~~~~i~~lp~~ 296 (526)
.+|++|+|++|.|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555543
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.37 E-value=0.027 Score=50.89 Aligned_cols=85 Identities=14% Similarity=0.046 Sum_probs=71.7
Q ss_pred ccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEE
Q 038130 251 ILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLL 330 (526)
Q Consensus 251 ~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 330 (526)
+..+....+||++.|.....-..++-+..+..|+++.|.+..+|..++.+..++.+++..|. ....|.+.+.++.++.+
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchh
Confidence 55688899999998764443345778888899999999999999999999999999998765 77899999999999999
Q ss_pred eecCCC
Q 038130 331 NLHGCS 336 (526)
Q Consensus 331 ~l~~~~ 336 (526)
++..+.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 988754
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=81.59 E-value=1 Score=25.58 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=12.6
Q ss_pred CcccEEEccCCCCCCCC
Q 038130 407 TTLTSLYLNYCGILELP 423 (526)
Q Consensus 407 ~~L~~L~L~~~~~~~lp 423 (526)
++|+.|++++|+++++|
T Consensus 2 ~~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 2 PSLKELNVSNNQLTSLP 18 (26)
T ss_pred cccceeecCCCccccCc
Confidence 37888888888776665
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=81.10 E-value=1.4 Score=24.28 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=14.9
Q ss_pred CCCCCEEeccCCCCCCHHHHHHH
Q 038130 482 KSSTQLFDLSDNFKLDRNAVRII 504 (526)
Q Consensus 482 ~~~L~~L~l~~c~~l~~~~~~~~ 504 (526)
+++|++|+|++|. ++......+
T Consensus 1 ~~~L~~L~l~~n~-i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-ITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSB-EHHHHHHHH
T ss_pred CCCCCEEEccCCc-CCHHHHHHh
Confidence 4789999999997 777766554
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=65.76 E-value=0.14 Score=53.03 Aligned_cols=17 Identities=24% Similarity=0.102 Sum_probs=9.2
Q ss_pred CCCCCCEEeccCCCCCC
Q 038130 481 YKSSTQLFDLSDNFKLD 497 (526)
Q Consensus 481 ~~~~L~~L~l~~c~~l~ 497 (526)
.++.++.|.+++|+...
T Consensus 288 ~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 288 SCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhHHHHHhhcccCcccc
Confidence 45566666666654333
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=59.18 E-value=7.4 Score=22.17 Aligned_cols=13 Identities=31% Similarity=0.442 Sum_probs=6.2
Q ss_pred cccEEEecccCCc
Q 038130 279 KIEEIWLDGTAIE 291 (526)
Q Consensus 279 ~L~~L~L~~~~i~ 291 (526)
+|+.|+++.|.|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4445555555443
No 91
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=58.11 E-value=26 Score=29.10 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=19.9
Q ss_pred ccchHHHHHHhhhceEEEEecCCccc
Q 038130 54 DEISQSLGDAVEVSSIYIIFSESDAS 79 (526)
Q Consensus 54 ~~i~~~I~~kc~GlPLa~~~~g~~l~ 79 (526)
+.|.+.|-++.++.-..++++|....
T Consensus 58 ~~ik~~I~~~i~~s~~~IVLig~~T~ 83 (130)
T PF08937_consen 58 EYIKRKIRERIKNSSVTIVLIGPNTA 83 (130)
T ss_dssp TTHHHHHHHHHHTEEEEEEE--TT--
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCcc
Confidence 58899999999999999888887764
No 92
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=56.49 E-value=57 Score=33.15 Aligned_cols=92 Identities=14% Similarity=0.309 Sum_probs=52.1
Q ss_pred CCCCCcEEEecccccccCchHHHHHHHHHhCCCceEeeC-CcCCCccchHHHHHHhhhceEE-EEe----cCCccchhhc
Q 038130 10 QHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGN-DLKRGDEISQSLGDAVEVSSIY-IIF----SESDASSSWC 83 (526)
Q Consensus 10 ~~~~~~~f~s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~-~l~~~~~i~~~I~~kc~GlPLa-~~~----~g~~l~~~~~ 83 (526)
.+-+.||||||+....-+ ...-+-..|...|+.+|+|- .+..| +.-.++.+...|-.=- .+. +.+++... +
T Consensus 609 ~skq~DVFISYRRstGnQ-LASLiKV~LQL~GyrVFIDVdKL~AG-KFdssLlkni~aAkhFiLVLtP~sLDr~lnD~-n 685 (832)
T KOG3678|consen 609 LSKQIDVFISYRRSTGNQ-LASLIKVLLQLRGYRVFIDVDKLYAG-KFDSSLLKNIQAAKHFILVLTPNSLDRLLNDD-N 685 (832)
T ss_pred ccCCcceEEEeeccccHH-HHHHHHHHHHhcCceEEEehhhhhcc-cccHHHHHHHHhhheeEEEeCcchHHHHhccc-c
Confidence 356799999999886443 44444456678899999997 44433 2223555555554433 222 24444443 2
Q ss_pred HHHHHHH-HHHHhhCCCeEEEE
Q 038130 84 LDELLKI-VECRTNYGQIVVAV 104 (526)
Q Consensus 84 ~~~w~~i-~~~~~~~~~~il~~ 104 (526)
-+.|..- +.+--+....|+|+
T Consensus 686 CeDWVHKEl~~Afe~~KNIiPI 707 (832)
T KOG3678|consen 686 CEDWVHKELKCAFEHQKNIIPI 707 (832)
T ss_pred HHHHHHHHHHHHHHhcCCeeee
Confidence 3445432 23333334467777
No 93
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=54.87 E-value=0.21 Score=51.70 Aligned_cols=63 Identities=17% Similarity=0.080 Sum_probs=31.7
Q ss_pred ccccCCCcEEeeCCCCCCCc-C----CCCCCC-CcccEEEecccCCc-----ccCccccCCCCCCEEeccCCcc
Q 038130 251 ILHLEFLKKLNLLGCSKLKR-L----PEFSSS-GKIEEIWLDGTAIE-----ELPSSIGCLSRLLYLYLSDCKR 313 (526)
Q Consensus 251 ~~~l~~L~~L~l~~~~~~~~-l----p~~~~l-~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~ 313 (526)
+.....|..|++++|..... . ..+... ..+++|++..+.++ .+...+....+|+.++++.|.+
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 44566677777777653311 0 012222 33455555555444 2334444556666666666553
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.99 E-value=15 Score=38.11 Aligned_cols=17 Identities=18% Similarity=-0.048 Sum_probs=9.8
Q ss_pred CCCCEecccCCccCCcC
Q 038130 442 SRLVVLNLNYCERLQSL 458 (526)
Q Consensus 442 ~~L~~L~L~~~~~l~~l 458 (526)
..|++|.+.+|+.++..
T Consensus 270 l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 270 LPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCHHHeeecCCccccch
Confidence 34666666666655543
No 95
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=40.07 E-value=23 Score=20.38 Aligned_cols=13 Identities=23% Similarity=0.148 Sum_probs=10.3
Q ss_pred cccEEEccCCCCC
Q 038130 408 TLTSLYLNYCGIL 420 (526)
Q Consensus 408 ~L~~L~L~~~~~~ 420 (526)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 7888888888764
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=34.67 E-value=13 Score=38.61 Aligned_cols=36 Identities=19% Similarity=0.097 Sum_probs=19.5
Q ss_pred CCCcccEEEecccCCcccCc---cccCCCCCCEEeccCC
Q 038130 276 SSGKIEEIWLDGTAIEELPS---SIGCLSRLLYLYLSDC 311 (526)
Q Consensus 276 ~l~~L~~L~L~~~~i~~lp~---~i~~L~~L~~L~L~~~ 311 (526)
+.+.+..++|++|++..+.. --..-++|.+|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34445566677776654321 1223356666677665
No 97
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=33.97 E-value=39 Score=28.60 Aligned_cols=45 Identities=11% Similarity=0.248 Sum_probs=36.4
Q ss_pred ecccccccCchHHHHHHHHHhCCCceEeeC-CcCCCccchHHHHHHhhhc
Q 038130 19 SFKGEDTRDNFTSHLYSALSQKCIETFIGN-DLKRGDEISQSLGDAVEVS 67 (526)
Q Consensus 19 s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~-~l~~~~~i~~~I~~kc~Gl 67 (526)
-|.++|.|+ |...+-+.|+..|.+++... -+ ..+.+.|-+|.+|.
T Consensus 62 Gf~e~g~~e-~~~E~~~~L~erGa~v~~~sHal---Sg~eRsis~kfGG~ 107 (186)
T COG1751 62 GFEEKGTQE-MDEEVRKELKERGAKVLTQSHAL---SGVERSISRKFGGY 107 (186)
T ss_pred ccccCCcee-cCHHHHHHHHHcCceeeeehhhh---hcchhhhhhhcCCc
Confidence 366788887 88888999999999888776 56 77778888888873
No 98
>KOG4062 consensus 6-O-methylguanine-DNA methyltransferase MGMT/MGT1, involved in DNA repair [Replication, recombination and repair]
Probab=25.84 E-value=54 Score=28.04 Aligned_cols=58 Identities=17% Similarity=0.287 Sum_probs=37.9
Q ss_pred CCCcEEEecccccccCchHHHHHHHHHhC--CCceEeeC--CcCCCccchHHHHHHhhhceEEEEe
Q 038130 12 NRNDVFLSFKGEDTRDNFTSHLYSALSQK--CIETFIGN--DLKRGDEISQSLGDAVEVSSIYIIF 73 (526)
Q Consensus 12 ~~~~~f~s~~~~d~~~~f~~~~~~~l~~~--~~~~~~~~--~l~~~~~i~~~I~~kc~GlPLa~~~ 73 (526)
-++.+|+-+.++| |..+++.+++.- |......+ ..-....-++.+...|++.++|+.+
T Consensus 77 ~~~p~~~~~~~t~----F~~kVw~al~~i~~Gev~tY~~iA~~iG~PsaaRaVg~A~~~n~la~lv 138 (178)
T KOG4062|consen 77 EEFPVHPVMRGTD----FQRKVWDALCEIPYGEVSTYGQIARRIGNPSAARAVGSAMAHNNLAILV 138 (178)
T ss_pred ccCCccceeccch----HHHHHHHHHhccCCCceeeHHHHHHHhCCcHHHHHHHHHHccCCCcEEe
Confidence 3455566677777 999999999843 33222222 1112266778999999999999443
No 99
>PF11430 EGL-1: Programmed cell death activator EGL-1; InterPro: IPR021543 Initiation of programmed cell death in C.elegans occurs by the binding of EGL-1 to CED-9 which disrupts a complex involving CED-4/CED-9 and allows CED-4 to activate CED-3, a caspase. It is the C-terminal domain of EGL-1 which is involved in the formation of the complex with CED-9. The formation of the complex induces structural rearrangements in CED-9 and EGL-1 adopts an extended alpha-helical conformation []. ; PDB: 1TY4_D.
Probab=20.72 E-value=61 Score=17.21 Aligned_cols=12 Identities=25% Similarity=0.318 Sum_probs=9.7
Q ss_pred cchHHHHHHhhh
Q 038130 55 EISQSLGDAVEV 66 (526)
Q Consensus 55 ~i~~~I~~kc~G 66 (526)
+||.+++..|+.
T Consensus 2 ~IG~kla~MCDd 13 (21)
T PF11430_consen 2 EIGTKLAAMCDD 13 (21)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 578888888875
Done!