Query 038130
Match_columns 526
No_of_seqs 458 out of 3685
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 13:19:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 5.1E-23 1.7E-27 202.6 20.5 213 230-467 80-302 (328)
2 1ogq_A PGIP-2, polygalacturona 99.9 1.5E-23 5E-28 205.1 14.5 244 231-497 50-305 (313)
3 4eco_A Uncharacterized protein 99.9 2.5E-22 8.7E-27 215.4 20.5 256 231-497 305-601 (636)
4 3rgz_A Protein brassinosteroid 99.9 3.6E-22 1.2E-26 219.1 19.3 153 231-385 394-548 (768)
5 3v47_A TOLL-like receptor 5B a 99.9 1.3E-21 4.6E-26 201.7 21.9 267 231-500 30-412 (455)
6 4fcg_A Uncharacterized protein 99.9 4E-22 1.4E-26 196.1 17.0 216 254-494 80-312 (328)
7 4eco_A Uncharacterized protein 99.9 5.2E-23 1.8E-27 220.7 11.4 151 231-384 81-339 (636)
8 2id5_A Lingo-1, leucine rich r 99.9 3.1E-21 1.1E-25 200.2 22.4 271 231-505 32-342 (477)
9 4ecn_A Leucine-rich repeat pro 99.9 4.8E-21 1.6E-25 209.6 24.8 255 231-497 548-841 (876)
10 3rgz_A Protein brassinosteroid 99.9 5.3E-22 1.8E-26 217.7 17.1 150 228-379 415-566 (768)
11 2ft3_A Biglycan; proteoglycan, 99.9 3.2E-21 1.1E-25 190.3 20.0 206 231-452 54-274 (332)
12 4ecn_A Leucine-rich repeat pro 99.9 2.1E-21 7.1E-26 212.5 20.3 252 227-494 444-764 (876)
13 1xku_A Decorin; proteoglycan, 99.9 6.3E-21 2.2E-25 188.0 20.2 237 231-495 52-305 (330)
14 2id5_A Lingo-1, leucine rich r 99.9 4.7E-21 1.6E-25 198.8 19.8 237 230-474 55-331 (477)
15 3o6n_A APL1; leucine-rich repe 99.9 1.1E-20 3.7E-25 190.8 20.7 247 231-496 69-352 (390)
16 4fmz_A Internalin; leucine ric 99.9 2.8E-20 9.7E-25 184.6 22.6 242 230-494 65-322 (347)
17 2z7x_B TOLL-like receptor 1, v 99.9 6.5E-21 2.2E-25 200.0 18.1 102 232-335 22-125 (520)
18 1ogq_A PGIP-2, polygalacturona 99.9 5E-22 1.7E-26 194.2 8.6 220 255-495 50-280 (313)
19 4fmz_A Internalin; leucine ric 99.9 5.3E-20 1.8E-24 182.7 22.8 243 230-495 43-299 (347)
20 3oja_B Anopheles plasmodium-re 99.9 1.8E-20 6.1E-25 199.8 20.7 88 407-496 254-358 (597)
21 3t6q_A CD180 antigen; protein- 99.9 5.3E-20 1.8E-24 196.7 24.4 260 231-493 33-386 (606)
22 2z80_A TOLL-like receptor 2, v 99.9 8.8E-21 3E-25 188.8 16.9 241 231-500 52-318 (353)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.7E-20 9.2E-25 197.1 21.2 105 231-337 52-158 (562)
24 2z81_A CD282 antigen, TOLL-lik 99.8 6.2E-21 2.1E-25 201.5 16.0 139 231-370 26-168 (549)
25 3o6n_A APL1; leucine-rich repe 99.8 4.8E-20 1.6E-24 186.1 20.7 255 230-494 44-329 (390)
26 3t6q_A CD180 antigen; protein- 99.8 2E-20 7E-25 200.0 17.8 268 230-508 277-572 (606)
27 2z66_A Variable lymphocyte rec 99.8 3.1E-20 1.1E-24 181.0 17.5 235 232-506 29-271 (306)
28 3vq2_A TLR4, TOLL-like recepto 99.8 4.1E-20 1.4E-24 197.7 19.9 137 231-368 32-171 (606)
29 3j0a_A TOLL-like receptor 5; m 99.8 5.7E-20 2E-24 203.6 21.5 139 231-370 24-168 (844)
30 3oja_B Anopheles plasmodium-re 99.8 6.5E-20 2.2E-24 195.4 21.1 230 230-474 74-356 (597)
31 3bz5_A Internalin-J, INLJ; leu 99.8 1.3E-19 4.5E-24 186.2 21.9 238 231-494 64-350 (457)
32 3zyi_A Leucine-rich repeat-con 99.8 1.9E-19 6.6E-24 185.3 23.0 245 234-504 57-311 (452)
33 2z7x_B TOLL-like receptor 1, v 99.8 9.2E-20 3.2E-24 191.2 19.4 86 227-314 41-128 (520)
34 3zyj_A Leucine-rich repeat-con 99.8 3.8E-19 1.3E-23 182.4 22.8 246 234-505 46-301 (440)
35 3bz5_A Internalin-J, INLJ; leu 99.8 5.3E-19 1.8E-23 181.6 23.8 194 230-452 41-243 (457)
36 3vq2_A TLR4, TOLL-like recepto 99.8 9.4E-20 3.2E-24 194.8 18.7 155 229-385 54-214 (606)
37 1xku_A Decorin; proteoglycan, 99.8 5.3E-19 1.8E-23 174.2 22.2 232 231-494 31-274 (330)
38 1ziw_A TOLL-like receptor 3; i 99.8 3.6E-19 1.2E-23 192.9 22.9 153 231-384 25-180 (680)
39 3zyi_A Leucine-rich repeat-con 99.8 1.6E-19 5.4E-24 185.9 19.0 220 231-474 75-301 (452)
40 2ft3_A Biglycan; proteoglycan, 99.8 6.5E-19 2.2E-23 173.7 22.5 243 232-496 34-307 (332)
41 1ozn_A Reticulon 4 receptor; N 99.8 4E-19 1.4E-23 171.3 19.5 230 234-505 14-247 (285)
42 3zyj_A Leucine-rich repeat-con 99.8 2E-19 6.7E-24 184.6 18.3 218 231-473 64-289 (440)
43 3v47_A TOLL-like receptor 5B a 99.8 2.8E-19 9.5E-24 184.3 18.9 112 354-475 279-407 (455)
44 1ozn_A Reticulon 4 receptor; N 99.8 5.6E-19 1.9E-23 170.2 19.6 204 231-455 32-238 (285)
45 2z81_A CD282 antigen, TOLL-lik 99.8 2.9E-19 1E-23 188.7 18.5 92 408-501 388-515 (549)
46 3g06_A SSPH2 (leucine-rich rep 99.8 2.6E-18 8.8E-23 182.0 25.3 229 231-501 61-301 (622)
47 3o53_A Protein LRIM1, AGAP0063 99.8 2.8E-19 9.5E-24 175.1 16.3 223 231-502 34-256 (317)
48 2z63_A TOLL-like receptor 4, v 99.8 4.9E-19 1.7E-23 187.8 19.1 145 231-377 28-175 (570)
49 3oja_A Leucine-rich immune mol 99.8 4.1E-19 1.4E-23 184.1 17.4 220 231-499 34-253 (487)
50 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.1E-18 7E-23 182.6 22.6 263 229-506 74-520 (562)
51 1o6v_A Internalin A; bacterial 99.8 2.2E-18 7.7E-23 178.0 21.6 79 230-312 67-145 (466)
52 1jl5_A Outer protein YOPM; leu 99.8 3.3E-19 1.1E-23 183.0 14.3 232 231-493 34-287 (454)
53 1o6v_A Internalin A; bacterial 99.8 3.3E-18 1.1E-22 176.8 21.8 246 227-495 86-365 (466)
54 3g06_A SSPH2 (leucine-rich rep 99.8 5.6E-18 1.9E-22 179.5 23.6 227 231-498 40-275 (622)
55 3j0a_A TOLL-like receptor 5; m 99.8 2.4E-18 8.3E-23 190.6 20.6 85 231-315 73-162 (844)
56 1ziw_A TOLL-like receptor 3; i 99.8 6.1E-18 2.1E-22 183.3 23.2 256 230-497 328-623 (680)
57 2z63_A TOLL-like receptor 4, v 99.8 1.7E-18 6E-23 183.5 18.3 132 230-362 51-189 (570)
58 1wwl_A Monocyte differentiatio 99.8 1.4E-19 4.9E-24 176.7 8.9 218 233-473 65-306 (312)
59 2o6q_A Variable lymphocyte rec 99.8 1.1E-17 3.7E-22 159.8 21.1 198 232-454 17-217 (270)
60 1jl5_A Outer protein YOPM; leu 99.8 1.8E-17 6.3E-22 170.0 23.3 235 231-497 111-371 (454)
61 2a5y_B CED-4; apoptosis; HET: 99.8 2.5E-22 8.4E-27 211.3 -13.9 157 20-208 293-472 (549)
62 3rfs_A Internalin B, repeat mo 99.8 9.2E-18 3.1E-22 160.5 17.8 147 231-382 41-188 (272)
63 4g8a_A TOLL-like receptor 4; l 99.8 2.5E-17 8.7E-22 176.7 22.9 131 231-364 52-187 (635)
64 2z62_A TOLL-like receptor 4, v 99.8 1.3E-17 4.6E-22 159.7 18.5 204 231-457 28-239 (276)
65 3rfs_A Internalin B, repeat mo 99.8 1.3E-17 4.3E-22 159.5 17.9 198 251-475 37-234 (272)
66 1wwl_A Monocyte differentiatio 99.8 7.2E-20 2.5E-24 178.9 2.2 240 231-495 43-308 (312)
67 1p9a_G Platelet glycoprotein I 99.8 1.7E-17 5.9E-22 160.0 18.6 196 231-453 10-206 (290)
68 2z62_A TOLL-like receptor 4, v 99.8 2.5E-17 8.5E-22 157.8 19.5 216 242-498 17-239 (276)
69 2z66_A Variable lymphocyte rec 99.7 3.8E-18 1.3E-22 166.1 11.9 202 230-454 51-260 (306)
70 2o6q_A Variable lymphocyte rec 99.7 1.6E-16 5.6E-21 151.6 22.1 199 255-495 16-217 (270)
71 2z80_A TOLL-like receptor 2, v 99.7 3.1E-18 1.1E-22 170.3 10.4 215 229-459 74-318 (353)
72 1p9a_G Platelet glycoprotein I 99.7 1.6E-16 5.6E-21 153.1 21.6 209 251-504 6-216 (290)
73 3ozi_A L6TR; plant TIR domain, 99.7 4.9E-18 1.7E-22 149.2 8.8 124 7-130 29-155 (204)
74 4ay9_X Follicle-stimulating ho 99.7 5.2E-17 1.8E-21 161.2 16.9 233 234-493 12-256 (350)
75 2xwt_C Thyrotropin receptor; s 99.7 7E-17 2.4E-21 151.2 15.1 203 243-473 22-236 (239)
76 3jrn_A AT1G72930 protein; TIR 99.7 9E-18 3.1E-22 145.3 7.6 122 9-130 4-127 (176)
77 1h6u_A Internalin H; cell adhe 99.7 1.6E-16 5.4E-21 154.7 16.0 193 231-459 41-233 (308)
78 2ast_B S-phase kinase-associat 99.7 2.9E-18 1E-22 169.2 3.4 200 232-453 48-258 (336)
79 2xwt_C Thyrotropin receptor; s 99.7 1.8E-16 6.2E-21 148.4 15.3 199 231-454 31-238 (239)
80 1h6u_A Internalin H; cell adhe 99.7 3.4E-16 1.2E-20 152.3 17.1 190 251-474 37-228 (308)
81 4ay9_X Follicle-stimulating ho 99.7 9.2E-16 3.2E-20 152.2 18.2 217 231-472 30-255 (350)
82 3o53_A Protein LRIM1, AGAP0063 99.7 3.2E-17 1.1E-21 160.4 6.3 242 227-501 54-304 (317)
83 3m19_A Variable lymphocyte rec 99.7 2.2E-15 7.5E-20 142.1 18.4 189 232-439 15-206 (251)
84 3m19_A Variable lymphocyte rec 99.7 3.1E-15 1.1E-19 141.0 19.0 179 255-457 14-194 (251)
85 4g8a_A TOLL-like receptor 4; l 99.7 2.5E-15 8.7E-20 161.1 19.7 139 242-385 41-183 (635)
86 4glp_A Monocyte differentiatio 99.7 9.1E-16 3.1E-20 149.5 14.6 149 232-382 92-258 (310)
87 2ca6_A RAN GTPase-activating p 99.7 7.8E-18 2.7E-22 169.6 -0.4 254 245-513 22-333 (386)
88 4glp_A Monocyte differentiatio 99.6 9.7E-17 3.3E-21 156.4 6.4 227 228-495 61-306 (310)
89 3oja_A Leucine-rich immune mol 99.6 8.3E-16 2.8E-20 159.2 13.1 196 246-473 21-224 (487)
90 1z7x_W Ribonuclease inhibitor; 99.6 2.2E-17 7.5E-22 170.3 -1.0 239 230-474 27-324 (461)
91 1h6t_A Internalin B; cell adhe 99.6 4.9E-15 1.7E-19 142.9 14.8 169 252-453 43-211 (291)
92 2ast_B S-phase kinase-associat 99.6 1.5E-16 5.1E-21 156.9 4.2 236 255-513 47-299 (336)
93 4ezg_A Putative uncharacterize 99.6 4.5E-15 1.5E-19 134.5 13.2 144 231-382 44-188 (197)
94 3cvr_A Invasion plasmid antige 99.6 6.7E-15 2.3E-19 154.0 15.7 190 231-460 59-248 (571)
95 3goz_A Leucine-rich repeat-con 99.6 7.9E-17 2.7E-21 160.7 0.6 247 236-497 3-298 (362)
96 1m9s_A Internalin B; cell inva 99.6 9.7E-15 3.3E-19 154.4 15.8 120 253-382 41-160 (605)
97 2o6s_A Variable lymphocyte rec 99.6 1.1E-14 3.9E-19 133.0 14.2 167 234-421 10-179 (208)
98 2ca6_A RAN GTPase-activating p 99.6 6.3E-17 2.2E-21 162.9 -1.6 232 229-475 30-315 (386)
99 1z7x_W Ribonuclease inhibitor; 99.6 5.3E-17 1.8E-21 167.4 -3.7 268 232-507 86-421 (461)
100 4ezg_A Putative uncharacterize 99.6 1.1E-14 3.9E-19 131.8 11.7 154 251-420 40-194 (197)
101 2xot_A Amphoterin-induced prot 99.6 4E-14 1.4E-18 140.9 15.4 145 234-384 21-172 (361)
102 2o6s_A Variable lymphocyte rec 99.6 7.5E-14 2.6E-18 127.5 15.7 179 258-466 10-189 (208)
103 2v9t_B SLIT homolog 2 protein 99.5 6.4E-14 2.2E-18 129.1 14.9 145 234-385 14-162 (220)
104 3e6j_A Variable lymphocyte rec 99.5 9.2E-14 3.1E-18 128.9 15.9 147 233-385 21-169 (229)
105 2v9t_B SLIT homolog 2 protein 99.5 7.5E-14 2.6E-18 128.6 15.2 149 258-420 14-165 (220)
106 2v70_A SLIT-2, SLIT homolog 2 99.5 5.1E-14 1.7E-18 129.8 14.0 145 234-383 14-161 (220)
107 1h6t_A Internalin B; cell adhe 99.5 6.3E-14 2.2E-18 135.0 14.8 171 231-423 46-216 (291)
108 3cvr_A Invasion plasmid antige 99.5 4.7E-13 1.6E-17 140.1 18.5 164 255-460 59-224 (571)
109 1m9s_A Internalin B; cell inva 99.5 1.2E-13 3.9E-18 146.2 13.8 172 230-423 42-213 (605)
110 3e6j_A Variable lymphocyte rec 99.5 3.9E-13 1.3E-17 124.7 15.5 151 257-421 21-173 (229)
111 2v70_A SLIT-2, SLIT homolog 2 99.5 3.9E-13 1.3E-17 123.8 14.9 151 258-421 14-167 (220)
112 1xeu_A Internalin C; cellular 99.5 1E-13 3.4E-18 131.5 11.1 167 234-423 22-188 (263)
113 3goz_A Leucine-rich repeat-con 99.5 7.8E-15 2.7E-19 146.2 1.9 231 259-504 2-276 (362)
114 3sfz_A APAF-1, apoptotic pepti 99.4 3.9E-16 1.3E-20 180.5 -11.3 150 19-207 285-452 (1249)
115 3ogk_B Coronatine-insensitive 99.4 3.2E-14 1.1E-18 151.4 4.0 81 231-312 220-304 (592)
116 4b8c_D Glucose-repressible alc 99.4 4.8E-14 1.6E-18 152.8 5.3 123 246-372 215-338 (727)
117 2ell_A Acidic leucine-rich nuc 99.4 2.9E-13 1E-17 119.0 9.0 133 231-368 24-164 (168)
118 3ogk_B Coronatine-insensitive 99.4 4.9E-14 1.7E-18 150.0 4.6 128 253-383 110-251 (592)
119 2xot_A Amphoterin-induced prot 99.4 7.6E-13 2.6E-17 131.6 12.2 155 231-389 39-203 (361)
120 1w8a_A SLIT protein; signaling 99.4 1.5E-12 5.2E-17 117.1 12.9 128 234-365 11-141 (192)
121 1dce_A Protein (RAB geranylger 99.4 2.6E-15 9E-20 157.8 -6.7 179 253-459 347-549 (567)
122 1xeu_A Internalin C; cellular 99.4 2.3E-13 7.8E-18 129.0 7.0 169 253-455 17-185 (263)
123 4b8c_D Glucose-repressible alc 99.4 9.8E-14 3.3E-18 150.4 4.2 149 231-385 173-326 (727)
124 1w8a_A SLIT protein; signaling 99.4 4.1E-12 1.4E-16 114.3 13.2 123 258-385 11-136 (192)
125 2ell_A Acidic leucine-rich nuc 99.4 1.4E-12 4.9E-17 114.6 8.7 79 255-334 24-104 (168)
126 3h16_A TIR protein; bacteria T 99.4 4.2E-13 1.4E-17 115.6 5.1 111 9-120 16-128 (154)
127 2je0_A Acidic leucine-rich nuc 99.4 9.6E-13 3.3E-17 113.2 7.2 123 255-382 17-147 (149)
128 2wfh_A SLIT homolog 2 protein 99.3 8.1E-12 2.8E-16 112.4 13.4 124 258-385 13-136 (193)
129 2je0_A Acidic leucine-rich nuc 99.3 8.2E-13 2.8E-17 113.6 6.3 126 231-359 17-149 (149)
130 1vt4_I APAF-1 related killer D 99.3 6.5E-16 2.2E-20 166.2 -16.3 138 19-201 297-437 (1221)
131 1a9n_A U2A', U2A'; complex (nu 99.3 4E-12 1.4E-16 112.6 9.0 125 251-382 15-147 (176)
132 2p1m_B Transport inhibitor res 99.3 5.5E-13 1.9E-17 141.9 3.4 13 407-419 289-301 (594)
133 2p1m_B Transport inhibitor res 99.3 3.2E-13 1.1E-17 143.6 0.0 62 440-504 395-476 (594)
134 2wfh_A SLIT homolog 2 protein 99.3 2.6E-11 8.9E-16 109.0 12.4 124 234-363 13-139 (193)
135 1dce_A Protein (RAB geranylger 99.3 1.3E-11 4.6E-16 129.6 11.8 102 257-362 443-545 (567)
136 2o6r_A Variable lymphocyte rec 99.3 6.3E-11 2.2E-15 104.9 13.4 128 233-366 9-140 (177)
137 1a9n_A U2A', U2A'; complex (nu 99.2 1.5E-11 5.2E-16 108.9 8.6 126 231-362 19-152 (176)
138 2o6r_A Variable lymphocyte rec 99.2 2.3E-10 7.7E-15 101.3 14.1 122 257-382 9-131 (177)
139 1ds9_A Outer arm dynein; leuci 99.2 2.2E-13 7.5E-18 123.4 -7.1 142 234-381 26-180 (198)
140 1z6t_A APAF-1, apoptotic prote 99.1 3.1E-13 1.1E-17 143.7 -9.8 153 12-203 276-448 (591)
141 3g39_A Variable lymphocyte rec 99.1 7.9E-10 2.7E-14 97.1 11.2 102 257-362 11-114 (170)
142 2r9u_A Variable lymphocyte rec 99.0 1.1E-09 3.7E-14 96.6 11.2 99 258-362 15-117 (174)
143 2r9u_A Variable lymphocyte rec 99.0 1.6E-09 5.4E-14 95.5 11.3 101 233-337 14-117 (174)
144 3g39_A Variable lymphocyte rec 99.0 3.4E-09 1.1E-13 93.0 12.3 102 233-337 11-114 (170)
145 1ds9_A Outer arm dynein; leuci 99.0 7.5E-12 2.6E-16 113.2 -5.4 140 292-448 39-180 (198)
146 3sb4_A Hypothetical leucine ri 98.9 1E-08 3.6E-13 100.2 12.1 89 348-460 225-314 (329)
147 3sb4_A Hypothetical leucine ri 98.8 1.4E-09 4.7E-14 106.6 4.2 233 231-493 25-307 (329)
148 2ifg_A High affinity nerve gro 98.8 1E-08 3.4E-13 101.1 10.2 102 259-363 12-116 (347)
149 2ifg_A High affinity nerve gro 98.8 1.7E-08 6E-13 99.4 10.7 103 234-338 11-116 (347)
150 3ub2_A TOLL/interleukin-1 rece 98.7 2.5E-09 8.4E-14 90.5 2.1 107 7-115 4-118 (146)
151 3un9_A NLR family member X1; l 98.6 1.3E-09 4.3E-14 108.4 -3.9 38 408-452 212-249 (372)
152 2js7_A Myeloid differentiation 98.6 1.5E-08 5.3E-13 87.1 3.2 100 9-110 12-117 (160)
153 2j67_A TOLL like receptor 10; 98.6 2E-08 6.9E-13 87.8 3.9 102 9-112 31-138 (178)
154 1fyx_A TOLL-like receptor 2; b 98.6 1.1E-08 3.7E-13 87.1 1.2 100 10-111 2-107 (149)
155 4fdw_A Leucine rich hypothetic 98.5 2.4E-06 8.3E-11 85.5 18.0 231 231-493 135-380 (401)
156 1t3g_A X-linked interleukin-1 98.5 1.5E-07 5.1E-12 80.8 6.5 100 13-112 2-116 (159)
157 2ra8_A Uncharacterized protein 98.4 6.4E-08 2.2E-12 95.4 3.0 39 407-452 279-317 (362)
158 3un9_A NLR family member X1; l 98.4 9.3E-09 3.2E-13 102.1 -3.1 131 231-362 72-223 (372)
159 3e4g_A ATP synthase subunit S, 98.4 1.6E-07 5.5E-12 81.5 3.8 97 408-515 62-172 (176)
160 4fdw_A Leucine rich hypothetic 98.4 7.4E-06 2.5E-10 82.0 16.3 207 231-471 157-378 (401)
161 2ra8_A Uncharacterized protein 98.2 1.5E-06 5.3E-11 85.5 6.9 61 247-309 164-227 (362)
162 3rw6_A Nuclear RNA export fact 97.7 7.3E-06 2.5E-10 76.6 1.5 82 298-382 167-258 (267)
163 1io0_A Tropomodulin; LRR prote 97.7 7.6E-06 2.6E-10 72.5 0.5 111 251-362 32-163 (185)
164 3e4g_A ATP synthase subunit S, 97.6 9.5E-06 3.3E-10 70.3 0.8 83 277-360 60-149 (176)
165 3rw6_A Nuclear RNA export fact 97.6 2.7E-05 9.1E-10 72.7 3.9 77 253-331 168-257 (267)
166 1io0_A Tropomodulin; LRR prote 97.5 2.4E-05 8.3E-10 69.1 2.1 88 274-362 32-135 (185)
167 4fs7_A Uncharacterized protein 97.2 0.0058 2E-07 60.7 15.4 103 250-360 157-263 (394)
168 4fs7_A Uncharacterized protein 97.1 0.016 5.4E-07 57.5 17.0 51 231-285 71-124 (394)
169 4gt6_A Cell surface protein; l 96.8 0.057 1.9E-06 53.4 17.9 60 430-493 298-367 (394)
170 4gt6_A Cell surface protein; l 96.1 0.16 5.3E-06 50.2 16.4 14 438-451 353-366 (394)
171 4h09_A Hypothetical leucine ri 95.8 0.67 2.3E-05 45.2 19.5 105 321-450 213-318 (379)
172 4h09_A Hypothetical leucine ri 95.6 0.2 6.7E-06 49.1 14.4 80 297-382 213-293 (379)
173 3rfe_A Platelet glycoprotein I 94.9 0.042 1.4E-06 44.9 5.9 33 302-335 32-65 (130)
174 3rfe_A Platelet glycoprotein I 91.7 0.33 1.1E-05 39.4 6.2 29 354-383 35-63 (130)
175 1pgv_A TMD-1, tropomodulin TMD 90.8 0.089 3E-06 46.2 2.0 82 253-334 39-135 (197)
176 1pgv_A TMD-1, tropomodulin TMD 90.8 0.12 4.2E-06 45.3 2.8 105 230-334 40-166 (197)
177 1eiw_A Hypothetical protein MT 31.1 15 0.00052 28.5 1.0 80 12-114 3-86 (111)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=5.1e-23 Score=202.57 Aligned_cols=213 Identities=27% Similarity=0.407 Sum_probs=177.9
Q ss_pred cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEec
Q 038130 230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYL 308 (526)
Q Consensus 230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L 308 (526)
...++.|+++++ .+..+|..+.++++|++|++++|... .+|. +..+.+|++|++++|.++.+|..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 467899999995 56689998999999999999998654 7775 89999999999999999999999999999999999
Q ss_pred cCCccCcccCcCCCC---------CCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcce
Q 038130 309 SDCKRLKSLPSSLSQ---------LKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYE 379 (526)
Q Consensus 309 ~~~~~~~~lp~~i~~---------l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~ 379 (526)
++|...+.+|..+.. +++|++|++++|. +..+|..++++++|+ .|++++|.+ ..+|..+..+ ++|+.
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~-~L~L~~N~l-~~l~~~l~~l-~~L~~ 233 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLK-SLKIRNSPL-SALGPAIHHL-PKLEE 233 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCC-EEEEESSCC-CCCCGGGGGC-TTCCE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCC-EEEccCCCC-CcCchhhccC-CCCCE
Confidence 999889999988765 9999999999975 458999999999999 999999999 6788887777 99999
Q ss_pred EEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCC
Q 038130 380 LSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLP 459 (526)
Q Consensus 380 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 459 (526)
|+++ +|..... .+..+.++. +|+.|+|++|.+. ..+|.++..+++|+.|+|++|+.++.+|
T Consensus 234 L~Ls----~n~~~~~---~p~~~~~l~-~L~~L~L~~n~~~-----------~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 234 LDLR----GCTALRN---YPPIFGGRA-PLKRLILKDCSNL-----------LTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp EECT----TCTTCCB---CCCCTTCCC-CCCEEECTTCTTC-----------CBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred EECc----CCcchhh---hHHHhcCCC-CCCEEECCCCCch-----------hhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 9994 4433222 222244444 9999999998744 3678888999999999999999999999
Q ss_pred Cccccccc
Q 038130 460 KLPFNLQG 467 (526)
Q Consensus 460 ~~~~~L~~ 467 (526)
..+.+|..
T Consensus 295 ~~l~~L~~ 302 (328)
T 4fcg_A 295 SLIAQLPA 302 (328)
T ss_dssp GGGGGSCT
T ss_pred HHHhhccC
Confidence 76544433
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=1.5e-23 Score=205.12 Aligned_cols=244 Identities=16% Similarity=0.190 Sum_probs=190.8
Q ss_pred CcceEEEeccCCCCC--CCChhccccCCCcEEeeCC-CCCCCcCCC-CCCCCcccEEEecccCCc-ccCccccCCCCCCE
Q 038130 231 NTLVILNLSEYVSLN--SLPAEILHLEFLKKLNLLG-CSKLKRLPE-FSSSGKIEEIWLDGTAIE-ELPSSIGCLSRLLY 305 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~-~~~~~~lp~-~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~ 305 (526)
.+++.|+++++.... .+|..+.++++|++|++++ |.....+|. +..+++|++|++++|.+. .+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 478999999977666 7899999999999999995 665556775 899999999999999998 88999999999999
Q ss_pred EeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcc-cccceeeccccccccccChhhhcccCCcceEEccc
Q 038130 306 LYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLE-ASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDR 384 (526)
Q Consensus 306 L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~-~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 384 (526)
|++++|.+.+.+|..+..+++|++|++++|...+.+|..++.++ .|+ .|++++|.+.+.+|..+..+ + |+.|+++.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~-~L~L~~N~l~~~~~~~~~~l-~-L~~L~Ls~ 206 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT-SMTISRNRLTGKIPPTFANL-N-LAFVDLSR 206 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC-EEECCSSEEEEECCGGGGGC-C-CSEEECCS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc-EEECcCCeeeccCChHHhCC-c-ccEEECcC
Confidence 99999998778999999999999999999877668999999998 899 99999999977888888777 5 99999954
Q ss_pred CCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCc---
Q 038130 385 SWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKL--- 461 (526)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~--- 461 (526)
| .... ..+..+..+. +|+.|++++|.+++. +..+..+++|++|++++|...+.+|..
T Consensus 207 N----~l~~---~~~~~~~~l~-~L~~L~L~~N~l~~~------------~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 266 (313)
T 1ogq_A 207 N----MLEG---DASVLFGSDK-NTQKIHLAKNSLAFD------------LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266 (313)
T ss_dssp S----EEEE---CCGGGCCTTS-CCSEEECCSSEECCB------------GGGCCCCTTCCEEECCSSCCEECCCGGGGG
T ss_pred C----cccC---cCCHHHhcCC-CCCEEECCCCceeee------------cCcccccCCCCEEECcCCcccCcCChHHhc
Confidence 4 2111 1122233444 999999999976542 223556677777777777655566643
Q ss_pred cccccccccccccccccCC---CCCCCCEEeccCCCCCC
Q 038130 462 PFNLQGIFAHHCTALSSIS---YKSSTQLFDLSDNFKLD 497 (526)
Q Consensus 462 ~~~L~~L~l~~c~~L~~l~---~~~~L~~L~l~~c~~l~ 497 (526)
+++|+.|+++++.--..++ .+++|+.|++++|+.+.
T Consensus 267 l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 267 LKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred CcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 4567777777765433443 46677777888877543
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=2.5e-22 Score=215.36 Aligned_cols=256 Identities=16% Similarity=0.199 Sum_probs=206.1
Q ss_pred CcceEEEeccCCCCCCCCh--hccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCC-CCEEe
Q 038130 231 NTLVILNLSEYVSLNSLPA--EILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSR-LLYLY 307 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~-L~~L~ 307 (526)
.++++|++++|... .+|. .+.++++|++|++++|.....+|.+..+++|++|++++|.++.+|..++.+++ |++|+
T Consensus 305 ~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~ 383 (636)
T 4eco_A 305 EKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLS 383 (636)
T ss_dssp GTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEE
T ss_pred CCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEE
Confidence 68899999996544 8888 89999999999999987554788888889999999999999999999999999 99999
Q ss_pred ccCCccCcccCcCCCCCC--CCcEEeecCCCCCCcCCCccc-------CcccccceeeccccccccccChhhhcccCCcc
Q 038130 308 LSDCKRLKSLPSSLSQLK--SLKLLNLHGCSNLQRLPDDFG-------NLEASNSTLYAKGTAAKREVPSSIVGSNNNLY 378 (526)
Q Consensus 308 L~~~~~~~~lp~~i~~l~--~L~~L~l~~~~~~~~lp~~~~-------~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~ 378 (526)
+++|.+. .+|..+..+. +|++|++++|...+..|..+. .+.+|+ .|++++|.+ ..+|..++..+++|+
T Consensus 384 Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~-~L~Ls~N~l-~~lp~~~~~~l~~L~ 460 (636)
T 4eco_A 384 FAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS-SINLSNNQI-SKFPKELFSTGSPLS 460 (636)
T ss_dssp CCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE-EEECCSSCC-CSCCTHHHHTTCCCS
T ss_pred ccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC-EEECcCCcc-CcCCHHHHccCCCCC
Confidence 9998855 8888777655 899999999888888888887 778899 999999999 688888877559999
Q ss_pred eEEcccCCCCCCCCCCCCCcccC-----cccccCcccEEEccCCCCCCCCCc-------------cCCCCcccccHHHhc
Q 038130 379 ELSLDRSWGGDKQMGLSSPITLP-----LDGLHTTLTSLYLNYCGILELPDS-------------LEKNNFERIPESIIQ 440 (526)
Q Consensus 379 ~L~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~~L~L~~~~~~~lp~~-------------l~~~~l~~lp~~l~~ 440 (526)
.|+++.| .... .+..... ...+ ++|+.|++++|.++++|.. +++|.++.+|..+..
T Consensus 461 ~L~Ls~N----~l~~-i~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~ 534 (636)
T 4eco_A 461 SINLMGN----MLTE-IPKNSLKDENENFKNT-YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN 534 (636)
T ss_dssp EEECCSS----CCSB-CCSSSSEETTEECTTG-GGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGG
T ss_pred EEECCCC----CCCC-cCHHHhcccccccccc-CCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhc
Confidence 9999544 2211 1111000 0111 2899999999999987753 678899999999999
Q ss_pred cCCCCEeccc------CCccCCcCCCc---cccccccccccccccccCC--CCCCCCEEeccCCCCCC
Q 038130 441 LSRLVVLNLN------YCERLQSLPKL---PFNLQGIFAHHCTALSSIS--YKSSTQLFDLSDNFKLD 497 (526)
Q Consensus 441 l~~L~~L~L~------~~~~l~~lp~~---~~~L~~L~l~~c~~L~~l~--~~~~L~~L~l~~c~~l~ 497 (526)
+++|+.|+++ +|...+.+|.. +++|+.|++++|.- ..++ ..++|+.|++++|+...
T Consensus 535 l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNPNIS 601 (636)
T ss_dssp CSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCTTCE
T ss_pred CCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCCCcc
Confidence 9999999995 45567777854 57899999998876 6666 36899999999997543
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=3.6e-22 Score=219.05 Aligned_cols=153 Identities=22% Similarity=0.238 Sum_probs=119.6
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCc-ccCccccCCCCCCEEec
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIE-ELPSSIGCLSRLLYLYL 308 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L 308 (526)
..++.|++++|.....+|..+.++++|++|++++|.....+|. +..+++|++|++++|.+. .+|..++.+++|++|++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 4567777777665556777788888888888888765555664 777888888888888877 67778888888888888
Q ss_pred cCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccC
Q 038130 309 SDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRS 385 (526)
Q Consensus 309 ~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 385 (526)
++|.+.+.+|..+..+++|++|++++|...+.+|..++++++|+ .|++++|.+.+.+|..+..+ ++|+.|+++.|
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N 548 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA-ILKLSNNSFSGNIPAELGDC-RSLIWLDLNTN 548 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC-EEECCSSCCEEECCGGGGGC-TTCCEEECCSS
T ss_pred cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC-EEECCCCcccCcCCHHHcCC-CCCCEEECCCC
Confidence 88887777888888888888888888777777888888888888 88888888877788877776 88888888654
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=1.3e-21 Score=201.66 Aligned_cols=267 Identities=19% Similarity=0.125 Sum_probs=181.6
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC--CCCCCCcccEEEecccCCccc-CccccCCCCCCEEe
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP--EFSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLY 307 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~ 307 (526)
.++++|++++|......|..+.++++|++|++++|.....++ .+.++++|++|++++|.+..+ |..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 567888888865554557778888888888888876654554 378888888888888888855 67788888888888
Q ss_pred ccCCccCcccCcC--CCCCCCCcEEeecCCCCCCcCCCc-ccCcccccceeeccccccccccChhhhcc-----------
Q 038130 308 LSDCKRLKSLPSS--LSQLKSLKLLNLHGCSNLQRLPDD-FGNLEASNSTLYAKGTAAKREVPSSIVGS----------- 373 (526)
Q Consensus 308 L~~~~~~~~lp~~--i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~~L~l~~~~~~~~~~~~l~~~----------- 373 (526)
+++|.+.+..|.. +..+++|++|++++|......|.. ++++++|+ .|++++|.+.+..+..+...
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH-VLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC-EEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc-EEeCCCCcccccChhhhhccccccccccccc
Confidence 8888766555544 778888888888887665555665 77888888 88888887754444433221
Q ss_pred ----------------------cCCcceEEcccCCCC-----------------------CC------------------
Q 038130 374 ----------------------NNNLYELSLDRSWGG-----------------------DK------------------ 390 (526)
Q Consensus 374 ----------------------~~~L~~L~l~~~~~~-----------------------~~------------------ 390 (526)
+++|++|+++.|... +.
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 145667776544110 00
Q ss_pred -------CCC--------CCCCcccCcccccCcccEEEccCCCCCCCCCc------------cCCCCcccc-cHHHhccC
Q 038130 391 -------QMG--------LSSPITLPLDGLHTTLTSLYLNYCGILELPDS------------LEKNNFERI-PESIIQLS 442 (526)
Q Consensus 391 -------~~~--------~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~------------l~~~~l~~l-p~~l~~l~ 442 (526)
.+. .....+..+..+ ++|++|++++|.+++++.. +++|.++.+ |..+..++
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred cccccccCceEEEecCccccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 000 000001112233 3788888888887765432 777888876 46778889
Q ss_pred CCCEecccCCccCCcCCC---ccccccccccccccccccC-----CCCCCCCEEeccCCCCCCHHH
Q 038130 443 RLVVLNLNYCERLQSLPK---LPFNLQGIFAHHCTALSSI-----SYKSSTQLFDLSDNFKLDRNA 500 (526)
Q Consensus 443 ~L~~L~L~~~~~l~~lp~---~~~~L~~L~l~~c~~L~~l-----~~~~~L~~L~l~~c~~l~~~~ 500 (526)
+|+.|++++|...+..|. .+++|+.|+++++. ++.+ ..+++|++|++++|+--...+
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999998855444353 25789999998864 3333 358899999999998655544
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=4e-22 Score=196.11 Aligned_cols=216 Identities=23% Similarity=0.325 Sum_probs=184.3
Q ss_pred cCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEee
Q 038130 254 LEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNL 332 (526)
Q Consensus 254 l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 332 (526)
..++++|++++|. +..+|. +..+.+|++|++++|.++.+|..++++++|++|++++|.+. .+|..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCC-chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 5789999999976 557775 88899999999999999999999999999999999999855 88999999999999999
Q ss_pred cCCCCCCcCCCcccC---------cccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcc
Q 038130 333 HGCSNLQRLPDDFGN---------LEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLD 403 (526)
Q Consensus 333 ~~~~~~~~lp~~~~~---------l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 403 (526)
++|+..+.+|..++. +++|+ .|++++|.+ ..+|..+..+ ++|+.|+++.| .... .+..+.
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~-~L~L~~n~l-~~lp~~l~~l-~~L~~L~L~~N----~l~~----l~~~l~ 226 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQ-SLRLEWTGI-RSLPASIANL-QNLKSLKIRNS----PLSA----LGPAIH 226 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCC-EEEEEEECC-CCCCGGGGGC-TTCCEEEEESS----CCCC----CCGGGG
T ss_pred CCCCCccccChhHhhccchhhhccCCCCC-EEECcCCCc-CcchHhhcCC-CCCCEEEccCC----CCCc----Cchhhc
Confidence 999999999987765 99999 999999999 5899988777 99999999554 2211 111244
Q ss_pred cccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCc---cccccccccccccccccCC
Q 038130 404 GLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKL---PFNLQGIFAHHCTALSSIS 480 (526)
Q Consensus 404 ~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~---~~~L~~L~l~~c~~L~~l~ 480 (526)
.+. +|++|++++|.+.+ .+|.++..+++|+.|+|++|...+.+|.. +++|+.|++++|..+..+|
T Consensus 227 ~l~-~L~~L~Ls~n~~~~-----------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 227 HLP-KLEELDLRGCTALR-----------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp GCT-TCCEEECTTCTTCC-----------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred cCC-CCCEEECcCCcchh-----------hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 444 99999999998554 56778889999999999999999999964 5789999999999888877
Q ss_pred ----CCCCCCEEeccCCC
Q 038130 481 ----YKSSTQLFDLSDNF 494 (526)
Q Consensus 481 ----~~~~L~~L~l~~c~ 494 (526)
.+++|+.+++..+.
T Consensus 295 ~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 295 SLIAQLPANCIILVPPHL 312 (328)
T ss_dssp GGGGGSCTTCEEECCGGG
T ss_pred HHHhhccCceEEeCCHHH
Confidence 58999999998763
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=5.2e-23 Score=220.72 Aligned_cols=151 Identities=19% Similarity=0.256 Sum_probs=102.6
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCC-------------------------------------------
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSK------------------------------------------- 267 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~------------------------------------------- 267 (526)
..++.|+++++...+.+|+.++++++|++|+|++|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 3567788887766667777788888888888877632
Q ss_pred ----------------------------------CCcCCC-CCCCCcccEEEecccCCcc------------------cC
Q 038130 268 ----------------------------------LKRLPE-FSSSGKIEEIWLDGTAIEE------------------LP 294 (526)
Q Consensus 268 ----------------------------------~~~lp~-~~~l~~L~~L~L~~~~i~~------------------lp 294 (526)
++.+|. ++.+++|++|+|++|.++. +|
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 112443 6667777777777777775 77
Q ss_pred cccc--CCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCC-CCC-cCCCcccCc------ccccceeecccccccc
Q 038130 295 SSIG--CLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCS-NLQ-RLPDDFGNL------EASNSTLYAKGTAAKR 364 (526)
Q Consensus 295 ~~i~--~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~-~~~-~lp~~~~~l------~~L~~~L~l~~~~~~~ 364 (526)
..++ ++++|++|++++|.+.+.+|..++++++|++|++++|. ..+ .+|..++++ ++|+ .|++++|.+ .
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~-~L~L~~n~l-~ 318 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ-IIYIGYNNL-K 318 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC-EEECCSSCC-S
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCC-EEECCCCcC-C
Confidence 7777 77777777777777667777777777777777777765 333 466666655 6666 777777777 3
Q ss_pred ccCh--hhhcccCCcceEEccc
Q 038130 365 EVPS--SIVGSNNNLYELSLDR 384 (526)
Q Consensus 365 ~~~~--~l~~~~~~L~~L~l~~ 384 (526)
.+|. .+..+ ++|+.|+++.
T Consensus 319 ~ip~~~~l~~l-~~L~~L~L~~ 339 (636)
T 4eco_A 319 TFPVETSLQKM-KKLGMLECLY 339 (636)
T ss_dssp SCCCHHHHTTC-TTCCEEECCS
T ss_pred ccCchhhhccC-CCCCEEeCcC
Confidence 6666 55555 6777777743
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=3.1e-21 Score=200.19 Aligned_cols=271 Identities=17% Similarity=0.105 Sum_probs=176.2
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCcc-ccCCCCCCEEec
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYL 308 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L 308 (526)
..++.|++++|......+..+.++++|++|++++|......|. +.++++|++|+|++|.++.+|.. ++++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 4678888888654444456778888888888888754444453 78888888888888888877764 678888888888
Q ss_pred cCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCC
Q 038130 309 SDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGG 388 (526)
Q Consensus 309 ~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 388 (526)
++|.+....|..+..+++|++|++++|......|..+.++++|+ .|++++|.+ ..++......+++|+.|++..|...
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE-QLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC-EEEEESCCC-SSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCC-EEECCCCcC-cccChhHhcccCCCcEEeCCCCcCc
Confidence 88877766777788888888888888766555566788888888 888888887 5555543344477888877544111
Q ss_pred CCCC-----------------CCCCCcccCcccccCcccEEEccCCCCCCCCCc------------cCCCCcccccH-HH
Q 038130 389 DKQM-----------------GLSSPITLPLDGLHTTLTSLYLNYCGILELPDS------------LEKNNFERIPE-SI 438 (526)
Q Consensus 389 ~~~~-----------------~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~------------l~~~~l~~lp~-~l 438 (526)
.... ......+....... +|+.|++++|.++++|.. +++|.++.++. .+
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC-CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCc-cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence 0000 00000000011112 677777777776666632 56666666553 45
Q ss_pred hccCCCCEecccCCccCCcCCCc---cccccccccccccccccC-----CCCCCCCEEeccCCCCCCHHHHHHHH
Q 038130 439 IQLSRLVVLNLNYCERLQSLPKL---PFNLQGIFAHHCTALSSI-----SYKSSTQLFDLSDNFKLDRNAVRIIV 505 (526)
Q Consensus 439 ~~l~~L~~L~L~~~~~l~~lp~~---~~~L~~L~l~~c~~L~~l-----~~~~~L~~L~l~~c~~l~~~~~~~~~ 505 (526)
..+++|+.|+|++|...+..|.. +++|+.|+++++. ++.+ ..+++|+.|++++||-.......++.
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~ 342 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPLACDCRLLWVF 342 (477)
T ss_dssp TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHH
T ss_pred cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCCCccCccchHhHH
Confidence 66777777777776433333332 4577888887763 3333 35788999999999865554444443
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=4.8e-21 Score=209.64 Aligned_cols=255 Identities=15% Similarity=0.177 Sum_probs=189.3
Q ss_pred CcceEEEeccCCCCCCCCh--hccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCC-CCEEe
Q 038130 231 NTLVILNLSEYVSLNSLPA--EILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSR-LLYLY 307 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~-L~~L~ 307 (526)
++++.|++++|... .+|. .+.++++|++|++++|... .+|.+..+++|+.|++++|.+..+|..+..+++ |++|+
T Consensus 548 ~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~ 625 (876)
T 4ecn_A 548 PKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLG 625 (876)
T ss_dssp TTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEE
T ss_pred CCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccccchHHHhhccccCCEEE
Confidence 36788888875444 7777 7888888888888887644 777778888888888888888888888888888 88888
Q ss_pred ccCCccCcccCcCCCCCCC--CcEEeecCCCCCCcCCC---ccc--CcccccceeeccccccccccChhhhcccCCcceE
Q 038130 308 LSDCKRLKSLPSSLSQLKS--LKLLNLHGCSNLQRLPD---DFG--NLEASNSTLYAKGTAAKREVPSSIVGSNNNLYEL 380 (526)
Q Consensus 308 L~~~~~~~~lp~~i~~l~~--L~~L~l~~~~~~~~lp~---~~~--~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L 380 (526)
+++|.+. .+|..+..+.. |+.|++++|...+.+|. .++ .+.+|+ .|++++|.+ ..+|..++..+++|+.|
T Consensus 626 Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~-~L~Ls~N~L-~~lp~~~~~~l~~L~~L 702 (876)
T 4ecn_A 626 FSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS-TVTLSYNEI-QKFPTELFATGSPISTI 702 (876)
T ss_dssp CCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE-EEECCSSCC-CSCCHHHHHTTCCCSEE
T ss_pred CcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC-EEEccCCcC-CccCHHHHccCCCCCEE
Confidence 8887744 77777666544 88888888766554442 222 334788 899999988 58888887555999999
Q ss_pred EcccCCCCCCCCCCCCCcccC-----cccccCcccEEEccCCCCCCCCCc-------------cCCCCcccccHHHhccC
Q 038130 381 SLDRSWGGDKQMGLSSPITLP-----LDGLHTTLTSLYLNYCGILELPDS-------------LEKNNFERIPESIIQLS 442 (526)
Q Consensus 381 ~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~~L~L~~~~~~~lp~~-------------l~~~~l~~lp~~l~~l~ 442 (526)
+++.| .... .+..... ..++ ++|+.|+|++|.++.+|.. +++|.++.+|..+..++
T Consensus 703 ~Ls~N----~L~~-ip~~~~~~~~~~l~nl-~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~ 776 (876)
T 4ecn_A 703 ILSNN----LMTS-IPENSLKPKDGNYKNT-YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSS 776 (876)
T ss_dssp ECCSC----CCSC-CCTTSSSCTTSCCTTG-GGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCT
T ss_pred ECCCC----cCCc-cChHHhcccccccccc-CCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCC
Confidence 99544 2111 1111100 1111 2899999999999887754 67889999999999999
Q ss_pred CCCEecccC------CccCCcCCCc---cccccccccccccccccCC--CCCCCCEEeccCCCCCC
Q 038130 443 RLVVLNLNY------CERLQSLPKL---PFNLQGIFAHHCTALSSIS--YKSSTQLFDLSDNFKLD 497 (526)
Q Consensus 443 ~L~~L~L~~------~~~l~~lp~~---~~~L~~L~l~~c~~L~~l~--~~~~L~~L~l~~c~~l~ 497 (526)
+|+.|+|++ |...+.+|.. +++|+.|++++|.- ..+| ..++|+.|+|++|+...
T Consensus 777 ~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPNIS 841 (876)
T ss_dssp TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTTCE
T ss_pred CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCCCc
Confidence 999999977 5556777753 57899999999866 7776 36899999999998543
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=5.3e-22 Score=217.72 Aligned_cols=150 Identities=20% Similarity=0.271 Sum_probs=135.5
Q ss_pred hhcCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCc-ccCccccCCCCCCE
Q 038130 228 LIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIE-ELPSSIGCLSRLLY 305 (526)
Q Consensus 228 ~~~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~ 305 (526)
.....+++|++++|.....+|..+..+++|++|++++|.....+|. +..+++|++|++++|.+. .+|..++++++|++
T Consensus 415 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 494 (768)
T 3rgz_A 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494 (768)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCE
Confidence 3456899999999887778999999999999999999987767775 889999999999999998 78999999999999
Q ss_pred EeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcce
Q 038130 306 LYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYE 379 (526)
Q Consensus 306 L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~ 379 (526)
|++++|.+.+.+|..++.+++|++|++++|...+.+|..++++++|+ .|++++|.+.+.+|..++.. ..+..
T Consensus 495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~g~ip~~~~~~-~~~~~ 566 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI-WLDLNTNLFNGTIPAAMFKQ-SGKIA 566 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC-EEECCSSEEESBCCGGGGTT-TTCBC
T ss_pred EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCC-EEECCCCccCCcCChHHhcc-cchhh
Confidence 99999998889999999999999999999988889999999999999 99999999988999988765 44433
No 11
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=3.2e-21 Score=190.26 Aligned_cols=206 Identities=22% Similarity=0.265 Sum_probs=126.6
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS 309 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 309 (526)
..+++|++++|......|..+.++++|++|++++|......|. +..+++|++|++++|.++.+|..+. ++|++|+++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence 4567777777543333345677777777777777654333343 6777777777777777777776665 677777777
Q ss_pred CCccCcccCcCCCCCCCCcEEeecCCCCC--CcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCC
Q 038130 310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNL--QRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWG 387 (526)
Q Consensus 310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~--~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 387 (526)
+|.+....+..+..+++|++|++++|... ...|..+..+ +|+ .|++++|.+ ..+|..+. ++|+.|+++.|
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~-~L~l~~n~l-~~l~~~~~---~~L~~L~l~~n-- 203 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN-YLRISEAKL-TGIPKDLP---ETLNELHLDHN-- 203 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS-CCBCCSSBC-SSCCSSSC---SSCSCCBCCSS--
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC-EEECcCCCC-CccCcccc---CCCCEEECCCC--
Confidence 77644433344677777777777776542 2445556666 677 777777777 55666543 56777777433
Q ss_pred CCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc------------cCCCCcccccHHHhccCCCCEecccCC
Q 038130 388 GDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS------------LEKNNFERIPESIIQLSRLVVLNLNYC 452 (526)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~------------l~~~~l~~lp~~l~~l~~L~~L~L~~~ 452 (526)
..... ....+..+. +|+.|++++|.+++++.. +++|.++.+|.++..+++|+.|++++|
T Consensus 204 --~i~~~---~~~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 204 --KIQAI---ELEDLLRYS-KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp --CCCCC---CTTSSTTCT-TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSS
T ss_pred --cCCcc---CHHHhcCCC-CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCC
Confidence 21111 111133333 777788877777665431 445555555555555666666666655
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=2.1e-21 Score=212.51 Aligned_cols=252 Identities=19% Similarity=0.233 Sum_probs=182.2
Q ss_pred HhhcCcceEEEeccCCCCC-----------------CCChhcc--ccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEec
Q 038130 227 VLIVNTLVILNLSEYVSLN-----------------SLPAEIL--HLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLD 286 (526)
Q Consensus 227 ~~~~~~l~~L~l~~~~~~~-----------------~lp~~~~--~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~ 286 (526)
+....++++|++++|.... .+|..++ ++++|++|++++|.....+|. +..+++|++|+++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 3445788999999976544 2888877 999999999999988888885 8899999999999
Q ss_pred ccC-Cc--ccCccccCCC-------CCCEEeccCCccCcccCc--CCCCCCCCcEEeecCCCCCCcCCCcccCcccccce
Q 038130 287 GTA-IE--ELPSSIGCLS-------RLLYLYLSDCKRLKSLPS--SLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNST 354 (526)
Q Consensus 287 ~~~-i~--~lp~~i~~L~-------~L~~L~L~~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~ 354 (526)
+|. ++ .+|..++++. +|++|++++|.+. .+|. .++++++|++|++++|... .+| .++++++|+ .
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~-~ 599 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLT-D 599 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEES-E
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcce-E
Confidence 997 77 4888777665 9999999998866 8998 8999999999999997654 888 899999999 9
Q ss_pred eeccccccccccChhhhcccCC-cceEEcccCCCCCCCCCCCCCcccCccccc-CcccEEEccCCCCCCCCC----c---
Q 038130 355 LYAKGTAAKREVPSSIVGSNNN-LYELSLDRSWGGDKQMGLSSPITLPLDGLH-TTLTSLYLNYCGILELPD----S--- 425 (526)
Q Consensus 355 L~l~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~lp~----~--- 425 (526)
|++++|.+ ..+|..+..+ ++ |+.|+++.| .... .+..+.... ++|+.|++++|.+.+.+. .
T Consensus 600 L~Ls~N~l-~~lp~~l~~l-~~~L~~L~Ls~N----~L~~----lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 600 LKLDYNQI-EEIPEDFCAF-TDQVEGLGFSHN----KLKY----IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669 (876)
T ss_dssp EECCSSCC-SCCCTTSCEE-CTTCCEEECCSS----CCCS----CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred EECcCCcc-ccchHHHhhc-cccCCEEECcCC----CCCc----CchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence 99999999 5889888777 77 999999554 2111 111111111 247777777777754211 0
Q ss_pred ----------cCCCCcccccHHHh-ccCCCCEecccCCccCCcCCCc-c----------ccccccccccccccccCC---
Q 038130 426 ----------LEKNNFERIPESII-QLSRLVVLNLNYCERLQSLPKL-P----------FNLQGIFAHHCTALSSIS--- 480 (526)
Q Consensus 426 ----------l~~~~l~~lp~~l~-~l~~L~~L~L~~~~~l~~lp~~-~----------~~L~~L~l~~c~~L~~l~--- 480 (526)
+++|.++.+|.++. .+++|+.|+|++| .+..+|.. . ++|+.|++++|. +..++
T Consensus 670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l 747 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDF 747 (876)
T ss_dssp CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGG
T ss_pred ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCCC-CccchHHh
Confidence 56677777776554 6777777777776 34456542 1 167777776652 22333
Q ss_pred ---CCCCCCEEeccCCC
Q 038130 481 ---YKSSTQLFDLSDNF 494 (526)
Q Consensus 481 ---~~~~L~~L~l~~c~ 494 (526)
.+++|+.|+|++|.
T Consensus 748 ~~~~l~~L~~L~Ls~N~ 764 (876)
T 4ecn_A 748 RATTLPYLSNMDVSYNC 764 (876)
T ss_dssp STTTCTTCCEEECCSSC
T ss_pred hhccCCCcCEEEeCCCC
Confidence 35666666666663
No 13
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=6.3e-21 Score=188.00 Aligned_cols=237 Identities=22% Similarity=0.250 Sum_probs=140.4
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS 309 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 309 (526)
..+++|++++|......+..+.++++|++|++++|......|. +..+++|++|++++|.++.+|..+. ++|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence 3566777777543333333566777777777777654433343 6677777777777777777766554 577777777
Q ss_pred CCccCcccCcCCCCCCCCcEEeecCCCCCC--cCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCC
Q 038130 310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQ--RLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWG 387 (526)
Q Consensus 310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 387 (526)
+|.+....+..+..+++|++|++++|.... ..+..+.++++|+ .|++++|.+ ..+|..+. ++|+.|+++.|
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~-~L~l~~n~l-~~l~~~~~---~~L~~L~l~~n-- 202 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS-YIRIADTNI-TTIPQGLP---PSLTELHLDGN-- 202 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC-EEECCSSCC-CSCCSSCC---TTCSEEECTTS--
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC-EEECCCCcc-ccCCcccc---ccCCEEECCCC--
Confidence 766544444456677777777777755432 4455666777777 777777776 55665443 66777777433
Q ss_pred CCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCc---ccc
Q 038130 388 GDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKL---PFN 464 (526)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~---~~~ 464 (526)
.. ....+..+..+. +|+.|++++|.+++++ +.++..+++|+.|++++| .+..+|.. .++
T Consensus 203 --~l---~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~ 264 (330)
T 1xku_A 203 --KI---TKVDAASLKGLN-NLAKLGLSFNSISAVD-----------NGSLANTPHLRELHLNNN-KLVKVPGGLADHKY 264 (330)
T ss_dssp --CC---CEECTGGGTTCT-TCCEEECCSSCCCEEC-----------TTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSS
T ss_pred --cC---CccCHHHhcCCC-CCCEEECCCCcCceeC-----------hhhccCCCCCCEEECCCC-cCccCChhhccCCC
Confidence 21 111111122333 7777777777655433 235566677777777776 44456542 356
Q ss_pred ccccccccccccccCC-----------CCCCCCEEeccCCCC
Q 038130 465 LQGIFAHHCTALSSIS-----------YKSSTQLFDLSDNFK 495 (526)
Q Consensus 465 L~~L~l~~c~~L~~l~-----------~~~~L~~L~l~~c~~ 495 (526)
|+.|+++++. ++.++ ..+.|+.|++++||.
T Consensus 265 L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 265 IQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred cCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcc
Confidence 6666666553 22222 135677777777764
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=4.7e-21 Score=198.84 Aligned_cols=237 Identities=22% Similarity=0.173 Sum_probs=160.5
Q ss_pred cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCccc-CccccCCCCCCEE
Q 038130 230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYL 306 (526)
Q Consensus 230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L 306 (526)
...+++|++++|......|..+.++++|++|++++|. +..+|. +.++++|++|++++|.+..+ |..+..+++|++|
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 3577888888865444456777888888888888865 445553 67788888888888888754 5567888888888
Q ss_pred eccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCC
Q 038130 307 YLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSW 386 (526)
Q Consensus 307 ~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 386 (526)
++++|.+....|..+..+++|++|++++|......+..+.++++|+ .|++++|.+.+..+..+..+ ++|+.|+++.+.
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~l~~n~i~~~~~~~~~~l-~~L~~L~l~~~~ 211 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI-VLRLRHLNINAIRDYSFKRL-YRLKVLEISHWP 211 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCC-EEEEESCCCCEECTTCSCSC-TTCCEEEEECCT
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCc-EEeCCCCcCcEeChhhcccC-cccceeeCCCCc
Confidence 8888776666666777888888888887654333333466777777 77777776633222233333 666666664321
Q ss_pred --------------------CCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc------------cCCCCcccc
Q 038130 387 --------------------GGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS------------LEKNNFERI 434 (526)
Q Consensus 387 --------------------~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~------------l~~~~l~~l 434 (526)
.++. ........+..+ ++|+.|+|++|.+++++.. +++|.++.+
T Consensus 212 ~~~~~~~~~~~~~~L~~L~l~~n~---l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (477)
T 2id5_A 212 YLDTMTPNCLYGLNLTSLSITHCN---LTAVPYLAVRHL-VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV 287 (477)
T ss_dssp TCCEECTTTTTTCCCSEEEEESSC---CCSCCHHHHTTC-TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE
T ss_pred cccccCcccccCccccEEECcCCc---ccccCHHHhcCc-cccCeeECCCCcCCccChhhccccccCCEEECCCCccceE
Confidence 1111 011000112333 4999999999998876653 778888876
Q ss_pred -cHHHhccCCCCEecccCCccCCcCCC----cccccccccccccc
Q 038130 435 -PESIIQLSRLVVLNLNYCERLQSLPK----LPFNLQGIFAHHCT 474 (526)
Q Consensus 435 -p~~l~~l~~L~~L~L~~~~~l~~lp~----~~~~L~~L~l~~c~ 474 (526)
|..+..+++|+.|+|++| .+..+|. .+++|+.|++++++
T Consensus 288 ~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 288 EPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 567889999999999999 5666664 25689999998754
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=1.1e-20 Score=190.82 Aligned_cols=247 Identities=15% Similarity=0.118 Sum_probs=128.9
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCcc-ccCCCCCCEEec
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYL 308 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L 308 (526)
+.+++|++++|......+..+..+++|++|++++|......|. +..+++|++|++++|.++.+|.. ++++++|++|++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 3455555555432222223455555555555555442222222 45555555555555555555544 255555555555
Q ss_pred cCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccc------------------cccChhh
Q 038130 309 SDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAK------------------REVPSSI 370 (526)
Q Consensus 309 ~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~------------------~~~~~~l 370 (526)
++|.+....|..+..+++|++|++++|... .++ ++.+++|+ .|++++|.+. ..+|...
T Consensus 149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~--~~~l~~L~-~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~ 224 (390)
T 3o6n_A 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLF-HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV 224 (390)
T ss_dssp CSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC--GGGCTTCS-EEECCSSCCSEEECCSSCSEEECCSSCCCEEECCC
T ss_pred CCCccCccChhhccCCCCCCEEECCCCcCC-ccc--cccccccc-eeecccccccccCCCCcceEEECCCCeeeeccccc
Confidence 555544333444555555555555554322 111 22222232 3333222221 1122111
Q ss_pred hcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCC-CCc-----------cCCCCcccccHHH
Q 038130 371 VGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILEL-PDS-----------LEKNNFERIPESI 438 (526)
Q Consensus 371 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-p~~-----------l~~~~l~~lp~~l 438 (526)
.++|+.|+++.| ... .. ..+..+ ++|++|++++|.++++ |.. +++|.++.+|..+
T Consensus 225 ---~~~L~~L~l~~n----~l~---~~--~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 291 (390)
T 3o6n_A 225 ---NVELTILKLQHN----NLT---DT--AWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG 291 (390)
T ss_dssp ---CSSCCEEECCSS----CCC---CC--GGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSS
T ss_pred ---cccccEEECCCC----CCc---cc--HHHcCC-CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCccc
Confidence 134444554222 111 10 112233 3788888888877764 222 6777777777777
Q ss_pred hccCCCCEecccCCccCCcCCCc---cccccccccccccccccC--CCCCCCCEEeccCCCCC
Q 038130 439 IQLSRLVVLNLNYCERLQSLPKL---PFNLQGIFAHHCTALSSI--SYKSSTQLFDLSDNFKL 496 (526)
Q Consensus 439 ~~l~~L~~L~L~~~~~l~~lp~~---~~~L~~L~l~~c~~L~~l--~~~~~L~~L~l~~c~~l 496 (526)
..+++|+.|++++| .+..+|.. +++|+.|+++++. +..+ ..+++|+.|++++|+--
T Consensus 292 ~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 292 QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSSCEE
T ss_pred CCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeCchhhccCCEEEcCCCCcc
Confidence 77888888888888 45566643 4678888888765 3333 36889999999999643
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=2.8e-20 Score=184.63 Aligned_cols=242 Identities=17% Similarity=0.266 Sum_probs=149.2
Q ss_pred cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130 230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS 309 (526)
Q Consensus 230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 309 (526)
..++++|++++| .+..++. +..+++|++|++++|. +..++.+..+++|++|++++|.+..+|. +..+++|++|+++
T Consensus 65 ~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~ 140 (347)
T 4fmz_A 65 LTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLG 140 (347)
T ss_dssp CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECT
T ss_pred cCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCc-ccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECC
Confidence 456777777775 4455555 6777777777777763 5556667777777778877777777665 7777777777777
Q ss_pred CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCC
Q 038130 310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGD 389 (526)
Q Consensus 310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 389 (526)
+|.....++. +..+++|++|++++|.. ..++. +..+++|+ .|++++|.+ ..++. +... ++|+.|++..+
T Consensus 141 ~n~~~~~~~~-~~~l~~L~~L~l~~~~~-~~~~~-~~~l~~L~-~L~l~~n~l-~~~~~-~~~l-~~L~~L~l~~n---- 209 (347)
T 4fmz_A 141 ANHNLSDLSP-LSNMTGLNYLTVTESKV-KDVTP-IANLTDLY-SLSLNYNQI-EDISP-LASL-TSLHYFTAYVN---- 209 (347)
T ss_dssp TCTTCCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCS-EEECTTSCC-CCCGG-GGGC-TTCCEEECCSS----
T ss_pred CCCCcccccc-hhhCCCCcEEEecCCCc-CCchh-hccCCCCC-EEEccCCcc-ccccc-ccCC-CccceeecccC----
Confidence 7765555444 67777777777777543 33332 66777777 777777776 44444 3333 67777777332
Q ss_pred CCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc----------cCCCCcccccHHHhccCCCCEecccCCccCCcCC
Q 038130 390 KQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS----------LEKNNFERIPESIIQLSRLVVLNLNYCERLQSLP 459 (526)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~----------l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 459 (526)
...... . +..+ ++|+.|++++|.++++|.. +++|.++.++ .+..+++|+.|++++| .+..+|
T Consensus 210 ~l~~~~---~--~~~~-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~ 281 (347)
T 4fmz_A 210 QITDIT---P--VANM-TRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSN-QISDIS 281 (347)
T ss_dssp CCCCCG---G--GGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCCCG
T ss_pred CCCCCc---h--hhcC-CcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCC-ccCCCh
Confidence 111111 0 2222 3777777777766665432 5555665554 4566667777777766 344444
Q ss_pred C--cccccccccccccccccc----CCCCCCCCEEeccCCC
Q 038130 460 K--LPFNLQGIFAHHCTALSS----ISYKSSTQLFDLSDNF 494 (526)
Q Consensus 460 ~--~~~~L~~L~l~~c~~L~~----l~~~~~L~~L~l~~c~ 494 (526)
. .+++|+.|++++|.-... +..+++|++|++++|+
T Consensus 282 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 282 VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 3 245666666666643222 2246667777777765
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=6.5e-21 Score=199.96 Aligned_cols=102 Identities=20% Similarity=0.111 Sum_probs=48.3
Q ss_pred cceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130 232 TLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD 310 (526)
Q Consensus 232 ~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 310 (526)
++++|++++|......|..+.++++|++|++++|......| .+..+++|++|++++|.++.+|.. .+++|++|++++
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~ 99 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSF 99 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCS
T ss_pred cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccC
Confidence 44555555543322223345555555555555543222223 245555555555555555555444 455555555555
Q ss_pred CccCc-ccCcCCCCCCCCcEEeecCC
Q 038130 311 CKRLK-SLPSSLSQLKSLKLLNLHGC 335 (526)
Q Consensus 311 ~~~~~-~lp~~i~~l~~L~~L~l~~~ 335 (526)
|.+.+ .+|..++.+++|++|++++|
T Consensus 100 N~l~~~~~p~~~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 100 NAFDALPICKEFGNMSQLKFLGLSTT 125 (520)
T ss_dssp SCCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred CccccccchhhhccCCcceEEEecCc
Confidence 54333 24444555555555554443
No 18
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=5e-22 Score=194.25 Aligned_cols=220 Identities=18% Similarity=0.215 Sum_probs=180.8
Q ss_pred CCCcEEeeCCCCCCC--cCCC-CCCCCcccEEEecc-cCCc-ccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcE
Q 038130 255 EFLKKLNLLGCSKLK--RLPE-FSSSGKIEEIWLDG-TAIE-ELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKL 329 (526)
Q Consensus 255 ~~L~~L~l~~~~~~~--~lp~-~~~l~~L~~L~L~~-~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 329 (526)
.+++.|++++|.... .+|. +..+++|++|++++ |.+. .+|..++++++|++|++++|.+.+.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999987665 5665 89999999999994 8887 78999999999999999999987799999999999999
Q ss_pred EeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcc
Q 038130 330 LNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTL 409 (526)
Q Consensus 330 L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 409 (526)
|++++|...+.+|..++++++|+ .|++++|.+.+.+|..+..+.++|+.|+++.| ... +..+..+..+ .|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N----~l~---~~~~~~~~~l--~L 199 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLV-GITFDGNRISGAIPDSYGSFSKLFTSMTISRN----RLT---GKIPPTFANL--NL 199 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCC-EEECCSSCCEEECCGGGGCCCTTCCEEECCSS----EEE---EECCGGGGGC--CC
T ss_pred EeCCCCccCCcCChHHhcCCCCC-eEECcCCcccCcCCHHHhhhhhcCcEEECcCC----eee---ccCChHHhCC--cc
Confidence 99999877778999999999999 99999999977999999888349999999544 211 1111112232 49
Q ss_pred cEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCC--ccccccccccccccccccCC----CCC
Q 038130 410 TSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK--LPFNLQGIFAHHCTALSSIS----YKS 483 (526)
Q Consensus 410 ~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~--~~~~L~~L~l~~c~~L~~l~----~~~ 483 (526)
+.|++++|.+++ ..|..+..+++|+.|++++|...+.+|. .+++|+.|+++++.--..++ .++
T Consensus 200 ~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 268 (313)
T 1ogq_A 200 AFVDLSRNMLEG-----------DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268 (313)
T ss_dssp SEEECCSSEEEE-----------CCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT
T ss_pred cEEECcCCcccC-----------cCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCc
Confidence 999999997654 3467788999999999999976655554 36799999999886543443 689
Q ss_pred CCCEEeccCCCC
Q 038130 484 STQLFDLSDNFK 495 (526)
Q Consensus 484 ~L~~L~l~~c~~ 495 (526)
+|++|++++|+-
T Consensus 269 ~L~~L~Ls~N~l 280 (313)
T 1ogq_A 269 FLHSLNVSFNNL 280 (313)
T ss_dssp TCCEEECCSSEE
T ss_pred CCCEEECcCCcc
Confidence 999999999953
No 19
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=5.3e-20 Score=182.65 Aligned_cols=243 Identities=21% Similarity=0.294 Sum_probs=193.7
Q ss_pred cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130 230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS 309 (526)
Q Consensus 230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 309 (526)
..+++.|+++++ .+..++. +..+++|++|++++|. +..++.+..+++|++|++++|.++.+| .++.+++|++|+++
T Consensus 43 l~~L~~L~l~~~-~i~~~~~-~~~~~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 43 LESITKLVVAGE-KVASIQG-IEYLTNLEYLNLNGNQ-ITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN 118 (347)
T ss_dssp HTTCSEEECCSS-CCCCCTT-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred cccccEEEEeCC-ccccchh-hhhcCCccEEEccCCc-cccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence 367899999994 5566775 8889999999999975 666777999999999999999999886 59999999999999
Q ss_pred CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCC
Q 038130 310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGD 389 (526)
Q Consensus 310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 389 (526)
+|.+ ..+|. +..+++|++|++++|.....++. +..+++|+ .|++++|.+ ..++. +..+ ++|+.|+++. |
T Consensus 119 ~n~i-~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~-~L~l~~~~~-~~~~~-~~~l-~~L~~L~l~~----n 187 (347)
T 4fmz_A 119 EDNI-SDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLN-YLTVTESKV-KDVTP-IANL-TDLYSLSLNY----N 187 (347)
T ss_dssp TSCC-CCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCC-EEECCSSCC-CCCGG-GGGC-TTCSEEECTT----S
T ss_pred CCcc-cCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCc-EEEecCCCc-CCchh-hccC-CCCCEEEccC----C
Confidence 9874 45655 88999999999999877766554 89999999 999999998 55554 5555 9999999944 3
Q ss_pred CCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc----------cCCCCcccccHHHhccCCCCEecccCCccCCcCC
Q 038130 390 KQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS----------LEKNNFERIPESIIQLSRLVVLNLNYCERLQSLP 459 (526)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~----------l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 459 (526)
...... . +..+ ++|+.|++++|.+.+++.. +++|.++.+|. +..+++|+.|++++| .+..++
T Consensus 188 ~l~~~~---~--~~~l-~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~ 259 (347)
T 4fmz_A 188 QIEDIS---P--LASL-TSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTN-QISDIN 259 (347)
T ss_dssp CCCCCG---G--GGGC-TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG
T ss_pred cccccc---c--ccCC-CccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCC-ccCCCh
Confidence 321111 1 3333 4999999999998876532 78899998886 889999999999998 455555
Q ss_pred C--cccccccccccccc--ccccCCCCCCCCEEeccCCCC
Q 038130 460 K--LPFNLQGIFAHHCT--ALSSISYKSSTQLFDLSDNFK 495 (526)
Q Consensus 460 ~--~~~~L~~L~l~~c~--~L~~l~~~~~L~~L~l~~c~~ 495 (526)
. .+++|+.|++++|. .+..+..+++|+.|++++|+.
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC
T ss_pred hHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcC
Confidence 3 36799999999873 222344689999999999954
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1.8e-20 Score=199.75 Aligned_cols=88 Identities=17% Similarity=0.171 Sum_probs=62.5
Q ss_pred CcccEEEccCCCCCCC-CCc-----------cCCCCcccccHHHhccCCCCEecccCCccCCcCCCc---cccccccccc
Q 038130 407 TTLTSLYLNYCGILEL-PDS-----------LEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKL---PFNLQGIFAH 471 (526)
Q Consensus 407 ~~L~~L~L~~~~~~~l-p~~-----------l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~---~~~L~~L~l~ 471 (526)
++|+.|+|++|.++++ |.. +++|.++.+|..+..+++|+.|+|++|. +..+|.. +++|+.|+++
T Consensus 254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~ 332 (597)
T 3oja_B 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLD 332 (597)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECC
T ss_pred CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECC
Confidence 3788888888877664 222 6777777777777778888888888874 4466643 5678888888
Q ss_pred ccccccc--CCCCCCCCEEeccCCCCC
Q 038130 472 HCTALSS--ISYKSSTQLFDLSDNFKL 496 (526)
Q Consensus 472 ~c~~L~~--l~~~~~L~~L~l~~c~~l 496 (526)
+|.- .. +..+++|+.|++++||--
T Consensus 333 ~N~l-~~~~~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 333 HNSI-VTLKLSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp SSCC-CCCCCCTTCCCSEEECCSSCEE
T ss_pred CCCC-CCcChhhcCCCCEEEeeCCCCC
Confidence 7653 33 335889999999998743
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=5.3e-20 Score=196.74 Aligned_cols=260 Identities=18% Similarity=0.095 Sum_probs=170.9
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCccc-CccccCCCCCCEEec
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLYL 308 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L 308 (526)
..+++|++++|......|..+.++++|++|++++|......|. +.++.+|++|++++|.+..+ |..++++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 3678999998665555577788899999999999865555554 88999999999999998855 668899999999999
Q ss_pred cCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcc--eEEcccCC
Q 038130 309 SDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLY--ELSLDRSW 386 (526)
Q Consensus 309 ~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~--~L~l~~~~ 386 (526)
++|.+....|..++++++|++|++++|...+.-+..+..+++|+ .|++++|.+.+..+..+..+ ++|+ .|+++.|.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l-~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLK-VLDFQNNAIHYLSKEDMSSL-QQATNLSLNLNGND 190 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCC-EEECCSSCCCEECHHHHHTT-TTCCSEEEECTTCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccC-EEEcccCcccccChhhhhhh-cccceeEEecCCCc
Confidence 99886665567788999999999998765543223344588888 99999998844445555555 7787 66664431
Q ss_pred CCCCCCCC--------------------------------------------------------------------CCCc
Q 038130 387 GGDKQMGL--------------------------------------------------------------------SSPI 398 (526)
Q Consensus 387 ~~~~~~~~--------------------------------------------------------------------~~~~ 398 (526)
........ ....
T Consensus 191 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence 11000000 0000
Q ss_pred ccCcccccCcccEEEccCCCCCCCCCc-----------cCCCCcccc-cHHHhccCCCCEecccCCccCCcCCC----cc
Q 038130 399 TLPLDGLHTTLTSLYLNYCGILELPDS-----------LEKNNFERI-PESIIQLSRLVVLNLNYCERLQSLPK----LP 462 (526)
Q Consensus 399 ~~~~~~~~~~L~~L~L~~~~~~~lp~~-----------l~~~~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~----~~ 462 (526)
...+..+ ++|++|++++|.++++|.. +++|.++.+ |..+..+++|+.|++++|...+.+|. .+
T Consensus 271 ~~~~~~l-~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 271 SNTFHCF-SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TTTTTTC-TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred HHHhccc-cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 0002222 3777788877777777664 566666655 34667777777777777765545543 24
Q ss_pred ccccccccccccccc------cCCCCCCCCEEeccCC
Q 038130 463 FNLQGIFAHHCTALS------SISYKSSTQLFDLSDN 493 (526)
Q Consensus 463 ~~L~~L~l~~c~~L~------~l~~~~~L~~L~l~~c 493 (526)
++|+.|+++++.--. .+..+++|++|++++|
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCC
Confidence 566666666543211 1223455555555554
No 22
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=8.8e-21 Score=188.78 Aligned_cols=241 Identities=20% Similarity=0.190 Sum_probs=180.7
Q ss_pred CcceEEEeccCCCCCCCCh-hccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCcc-ccCCCCCCEEe
Q 038130 231 NTLVILNLSEYVSLNSLPA-EILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLY 307 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~ 307 (526)
..+++|++++|. +..++. .+.++++|++|++++|......|. +.++++|++|++++|.++.+|.. ++++++|++|+
T Consensus 52 ~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 478999999965 445554 788999999999999864444444 88999999999999999988877 89999999999
Q ss_pred ccCCccCcccCc--CCCCCCCCcEEeecCCCCCCcC-CCcccCcccccceeeccccccccccChhhhcccCCcceEEccc
Q 038130 308 LSDCKRLKSLPS--SLSQLKSLKLLNLHGCSNLQRL-PDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDR 384 (526)
Q Consensus 308 L~~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 384 (526)
+++|.+. .+|. .+..+++|++|++++|...+.+ |..++++++|+ .|++++|.+.+..|..+..+ ++|++|+++.
T Consensus 131 L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~ 207 (353)
T 2z80_A 131 LLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE-ELEIDASDLQSYEPKSLKSI-QNVSHLILHM 207 (353)
T ss_dssp CTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE-EEEEEETTCCEECTTTTTTC-SEEEEEEEEC
T ss_pred CCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC-EEECCCCCcCccCHHHHhcc-ccCCeecCCC
Confidence 9998744 5665 6889999999999998655555 56789999999 99999999966667777766 9999999955
Q ss_pred CCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc--------------------cCCCCcccccHHHhccCCC
Q 038130 385 SWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS--------------------LEKNNFERIPESIIQLSRL 444 (526)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~--------------------l~~~~l~~lp~~l~~l~~L 444 (526)
| .. ...+..+....++|+.|++++|.+++++.. ++++.+..+|.++..+++|
T Consensus 208 n----~l----~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L 279 (353)
T 2z80_A 208 K----QH----ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL 279 (353)
T ss_dssp S----CS----TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTC
T ss_pred C----cc----ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCC
Confidence 4 21 111111122235999999999998875422 2333344577778888888
Q ss_pred CEecccCCccCCcCCCccccccccccccccccccCCCCCCCCEEeccCCCCCCHHH
Q 038130 445 VVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQLFDLSDNFKLDRNA 500 (526)
Q Consensus 445 ~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~~~~~L~~L~l~~c~~l~~~~ 500 (526)
+.|++++| .++.+|.. .+..+++|++|++++|+-.....
T Consensus 280 ~~L~Ls~N-~l~~i~~~----------------~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 280 LELEFSRN-QLKSVPDG----------------IFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CEEECCSS-CCCCCCTT----------------TTTTCTTCCEEECCSSCBCCCHH
T ss_pred CEEECCCC-CCCccCHH----------------HHhcCCCCCEEEeeCCCccCcCC
Confidence 88888887 34444421 12456889999999998777665
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=2.7e-20 Score=197.13 Aligned_cols=105 Identities=17% Similarity=0.066 Sum_probs=74.4
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS 309 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 309 (526)
.+++.|++++|......|..+.++++|++|++++|......|. +.++++|++|++++|.++.+|.. .+++|++|+++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS 129 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence 5678888888654444445677788888888888754433344 77788888888888888877776 67888888888
Q ss_pred CCccCc-ccCcCCCCCCCCcEEeecCCCC
Q 038130 310 DCKRLK-SLPSSLSQLKSLKLLNLHGCSN 337 (526)
Q Consensus 310 ~~~~~~-~lp~~i~~l~~L~~L~l~~~~~ 337 (526)
+|.+.+ .+|..++++++|++|++++|..
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred CCCccccCchHhhcccCcccEEecCCCcc
Confidence 877544 3456677777777777777543
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=6.2e-21 Score=201.53 Aligned_cols=139 Identities=23% Similarity=0.219 Sum_probs=92.0
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCcc-ccCCCCCCEEec
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYL 308 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L 308 (526)
..+++|++++|......|..+.++++|++|++++|......|. +..+.+|++|++++|.++.+|.. ++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 4677777777654444456677777777777777654433333 77777777777777777766654 777777777777
Q ss_pred cCCccCc-ccCcCCCCCCCCcEEeecCCCCCCcCC-CcccCcccccceeeccccccccccChhh
Q 038130 309 SDCKRLK-SLPSSLSQLKSLKLLNLHGCSNLQRLP-DDFGNLEASNSTLYAKGTAAKREVPSSI 370 (526)
Q Consensus 309 ~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~~L~l~~~~~~~~~~~~l 370 (526)
++|.+.+ ..|..++++++|++|++++|...+.+| ..++++++|+ .|++++|.+.+..|..+
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN-ELEIKALSLRNYQSQSL 168 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE-EEEEEETTCCEECTTTT
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccC-eeeccCCcccccChhhh
Confidence 7776543 345667777777777777766555555 3566677777 77777766644444433
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=4.8e-20 Score=186.05 Aligned_cols=255 Identities=18% Similarity=0.161 Sum_probs=165.2
Q ss_pred cCcceEEEeccCCCCCCCChh-ccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCc-cccCCCCCCEE
Q 038130 230 VNTLVILNLSEYVSLNSLPAE-ILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYL 306 (526)
Q Consensus 230 ~~~l~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L 306 (526)
...+++|+++++ .+..+|.. +..+++|++|++++|......+ .+..+.+|++|++++|.++.+|. .++++++|++|
T Consensus 44 l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 367899999985 56667754 6789999999999986443334 48999999999999999997754 58999999999
Q ss_pred eccCCccCcccCcC-CCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccC
Q 038130 307 YLSDCKRLKSLPSS-LSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRS 385 (526)
Q Consensus 307 ~L~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 385 (526)
++++|.+ ..+|.. +..+++|++|++++|......|..++++++|+ .|++++|.+ ..++. ... ++|+.|+++.|
T Consensus 123 ~L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l-~~~~~--~~l-~~L~~L~l~~n 196 (390)
T 3o6n_A 123 VLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ-NLQLSSNRL-THVDL--SLI-PSLFHANVSYN 196 (390)
T ss_dssp ECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC-EEECCSSCC-SBCCG--GGC-TTCSEEECCSS
T ss_pred ECCCCcc-CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC-EEECCCCcC-Ccccc--ccc-cccceeecccc
Confidence 9999974 467765 58999999999999876666677799999999 999999998 44442 333 78888888543
Q ss_pred CCCCCC----CC---C--CCCcccCcccccCcccEEEccCCCCCCCCCc----------cCCCCcccc-cHHHhccCCCC
Q 038130 386 WGGDKQ----MG---L--SSPITLPLDGLHTTLTSLYLNYCGILELPDS----------LEKNNFERI-PESIIQLSRLV 445 (526)
Q Consensus 386 ~~~~~~----~~---~--~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~----------l~~~~l~~l-p~~l~~l~~L~ 445 (526)
...... +. . ......+. ...++|+.|++++|.+++.+.. +++|.++.+ |..+..+++|+
T Consensus 197 ~l~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (390)
T 3o6n_A 197 LLSTLAIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275 (390)
T ss_dssp CCSEEECCSSCSEEECCSSCCCEEEC-CCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred cccccCCCCcceEEECCCCeeeeccc-cccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCC
Confidence 110000 00 0 00000000 1123566666666655543221 455555543 44555556666
Q ss_pred EecccCCccCCcCCC---ccccccccccccccccccCC----CCCCCCEEeccCCC
Q 038130 446 VLNLNYCERLQSLPK---LPFNLQGIFAHHCTALSSIS----YKSSTQLFDLSDNF 494 (526)
Q Consensus 446 ~L~L~~~~~l~~lp~---~~~~L~~L~l~~c~~L~~l~----~~~~L~~L~l~~c~ 494 (526)
.|++++| .+..+|. .+++|+.|++++|. +..++ .+++|+.|++++|+
T Consensus 276 ~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 276 RLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp EEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred EEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc
Confidence 6666655 2333332 23456666665552 23332 25566666666664
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=2e-20 Score=199.98 Aligned_cols=268 Identities=19% Similarity=0.085 Sum_probs=191.8
Q ss_pred cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCc-ccCcc-ccCCCCCCEE
Q 038130 230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIE-ELPSS-IGCLSRLLYL 306 (526)
Q Consensus 230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~-~lp~~-i~~L~~L~~L 306 (526)
..+++.|++++| .+..+|..+..+++|++|++++|......| .+..+++|++|++++|.+. .+|.. ++.+++|++|
T Consensus 277 l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 277 FSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp CTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred ccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 367899999985 556888888889999999999876544444 4788888999999988876 66654 8888899999
Q ss_pred eccCCccCccc--CcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEccc
Q 038130 307 YLSDCKRLKSL--PSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDR 384 (526)
Q Consensus 307 ~L~~~~~~~~l--p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 384 (526)
++++|.+.+.. |..+..+++|++|++++|......|..++++++|+ .|++++|.+.+..+......+++|+.|+++.
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE-LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCS-EEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCC-eEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence 99888765544 66788888999999988776666677888888888 8888888885555554333348888888843
Q ss_pred CCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCC--CCCc-------------cCCCCcccc-cHHHhccCCCCEec
Q 038130 385 SWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILE--LPDS-------------LEKNNFERI-PESIIQLSRLVVLN 448 (526)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--lp~~-------------l~~~~l~~l-p~~l~~l~~L~~L~ 448 (526)
|..... .+..+..+ ++|++|++++|.+++ +|.. +++|.++.+ |..+..+++|+.|+
T Consensus 435 ----n~l~~~---~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 506 (606)
T 3t6q_A 435 ----SLLDIS---SEQLFDGL-PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506 (606)
T ss_dssp ----CCCBTT---CTTTTTTC-TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ----CccCCc---CHHHHhCC-CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEE
Confidence 322111 11113333 388888888888765 2211 677777766 56788999999999
Q ss_pred ccCCccCCcCCCcc---ccccccccccccccccCC----CCCCCCEEeccCCCCCCHHHHHHHHHHH
Q 038130 449 LNYCERLQSLPKLP---FNLQGIFAHHCTALSSIS----YKSSTQLFDLSDNFKLDRNAVRIIVEDA 508 (526)
Q Consensus 449 L~~~~~l~~lp~~~---~~L~~L~l~~c~~L~~l~----~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 508 (526)
+++|...+..|..+ ++| .|+++++.-....+ .+++|+.|++++||-.......++.+..
T Consensus 507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~ 572 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWY 572 (606)
T ss_dssp CCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHH
T ss_pred CCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHH
Confidence 99997666555543 455 77777775443322 4789999999999977666555544443
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=3.1e-20 Score=181.00 Aligned_cols=235 Identities=18% Similarity=0.144 Sum_probs=108.0
Q ss_pred cceEEEeccCCCCCCCChh-ccccCCCcEEeeCCCCCCCcC---C-CCCCCCcccEEEecccCCcccCccccCCCCCCEE
Q 038130 232 TLVILNLSEYVSLNSLPAE-ILHLEFLKKLNLLGCSKLKRL---P-EFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYL 306 (526)
Q Consensus 232 ~l~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~l---p-~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 306 (526)
.+++|++++|. +..+|.. +.++++|++|++++|.. ..+ + .+..+.+|++|++++|.+..+|..+..+++|++|
T Consensus 29 ~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 29 SATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGL-SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCC-CEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCEEECCCCc-cCccCHhHhhccccCCEEECCCCcc-CcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 44555555532 3334332 34555555555555432 211 1 2334455555555555555555555555555555
Q ss_pred eccCCccCcccC-cCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecccccccc-ccChhhhcccCCcceEEccc
Q 038130 307 YLSDCKRLKSLP-SSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKR-EVPSSIVGSNNNLYELSLDR 384 (526)
Q Consensus 307 ~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~-~~~~~l~~~~~~L~~L~l~~ 384 (526)
++++|.+....+ ..+..+++|++|++++|......|..+.++++|+ .|++++|.+.+ .+|..+..+ ++|+.|+++.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~l-~~L~~L~Ls~ 184 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE-VLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQ 184 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC-EEECTTCEEGGGEECSCCTTC-TTCCEEECTT
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCC-EEECCCCccccccchhHHhhC-cCCCEEECCC
Confidence 555554322211 2345555555555555444334444455555555 55555555532 234333333 5555555522
Q ss_pred CCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCcccc
Q 038130 385 SWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFN 464 (526)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~ 464 (526)
| .. ....+..+..+. +|+.|++++|.++++| +..+..+++|+.|++++|...+..|
T Consensus 185 n----~l---~~~~~~~~~~l~-~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~~~~~----- 240 (306)
T 2z66_A 185 C----QL---EQLSPTAFNSLS-SLQVLNMSHNNFFSLD-----------TFPYKCLNSLQVLDYSLNHIMTSKK----- 240 (306)
T ss_dssp S----CC---CEECTTTTTTCT-TCCEEECTTSCCSBCC-----------SGGGTTCTTCCEEECTTSCCCBCSS-----
T ss_pred C----Cc---CCcCHHHhcCCC-CCCEEECCCCccCccC-----------hhhccCcccCCEeECCCCCCcccCH-----
Confidence 2 11 000011111222 5555555555443322 1233445555555555553222222
Q ss_pred ccccccccccccccCCCC-CCCCEEeccCCCCCCHHHHHHHHH
Q 038130 465 LQGIFAHHCTALSSISYK-SSTQLFDLSDNFKLDRNAVRIIVE 506 (526)
Q Consensus 465 L~~L~l~~c~~L~~l~~~-~~L~~L~l~~c~~l~~~~~~~~~~ 506 (526)
..+..+ ++|+.|++++|+--......++.+
T Consensus 241 ------------~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~ 271 (306)
T 2z66_A 241 ------------QELQHFPSSLAFLNLTQNDFACTCEHQSFLQ 271 (306)
T ss_dssp ------------SSCCCCCTTCCEEECTTCCEECSGGGHHHHH
T ss_pred ------------HHHHhhhccCCEEEccCCCeecccChHHHHH
Confidence 122334 489999999998655544444433
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=4.1e-20 Score=197.66 Aligned_cols=137 Identities=19% Similarity=0.140 Sum_probs=88.6
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCccc-CccccCCCCCCEEec
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLYL 308 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L 308 (526)
..+++|++++|......+..+.++++|++|++++|......|. +.++.+|++|++++|.++.+ |..++++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 4567777777544333444666777777777777653333343 66777777777777777755 666777777777777
Q ss_pred cCCccCcccCcCCCCCCCCcEEeecCCCCCC-cCCCcccCcccccceeeccccccccccCh
Q 038130 309 SDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQ-RLPDDFGNLEASNSTLYAKGTAAKREVPS 368 (526)
Q Consensus 309 ~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~~L~l~~~~~~~~~~~ 368 (526)
++|.+.+..|..++++++|++|++++|...+ .+|..++++++|+ +|++++|.+.+..+.
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~-~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV-HVDLSYNYIQTITVN 171 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC-EEECCSSCCCEECTT
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCC-EEEccCCcceecChh
Confidence 7776544444567777777777777765443 4566777777777 777777766443333
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=5.7e-20 Score=203.65 Aligned_cols=139 Identities=20% Similarity=0.137 Sum_probs=110.4
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcC-C-CCCCCCcccEEEecccCCccc-CccccCCCCCCEEe
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRL-P-EFSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLY 307 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~l-p-~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~ 307 (526)
.++++|++++|......|..+.++++|++|++++|.....+ | .+.++++|++|+|++|.+..+ |..++++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 57889999987655555777888999999999998666666 3 388899999999999998865 77899999999999
Q ss_pred ccCCccCcccCcC--CCCCCCCcEEeecCCCCCCcCC-CcccCcccccceeeccccccccccChhh
Q 038130 308 LSDCKRLKSLPSS--LSQLKSLKLLNLHGCSNLQRLP-DDFGNLEASNSTLYAKGTAAKREVPSSI 370 (526)
Q Consensus 308 L~~~~~~~~lp~~--i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~~L~l~~~~~~~~~~~~l 370 (526)
|++|.+.+.+|.. +.++++|++|++++|...+..| ..++++++|+ .|++++|.+.+..+..+
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~-~L~Ls~N~i~~~~~~~l 168 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK-SIDFSSNQIFLVCEHEL 168 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC-EEEEESSCCCCCCSGGG
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC-EEECCCCcCCeeCHHHc
Confidence 9998876666665 8889999999999876655443 4688888898 89998888755555444
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=6.5e-20 Score=195.43 Aligned_cols=230 Identities=16% Similarity=0.152 Sum_probs=151.3
Q ss_pred cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCcc-ccCCCCCCEEe
Q 038130 230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLY 307 (526)
Q Consensus 230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~ 307 (526)
.+.+++|++++|......|..+..+++|++|++++|......|. +..+++|++|+|++|.++.+|.. ++++++|++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 35677888877554444445677778888888887654333333 57778888888888888777766 47778888888
Q ss_pred ccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCccc-------------------------------------
Q 038130 308 LSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEA------------------------------------- 350 (526)
Q Consensus 308 L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~------------------------------------- 350 (526)
+++|.+.+..|..++.+++|++|++++|.... ++ ++.+++
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~ 230 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV 230 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC--hhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc
Confidence 88877666666667778888888887764332 22 112222
Q ss_pred ---ccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc--
Q 038130 351 ---SNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS-- 425 (526)
Q Consensus 351 ---L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~-- 425 (526)
|+ .|++++|.+.+ +..+..+ ++|+.|+++.| . ..+..+..+..+. +|+.|+|++|.++++|..
T Consensus 231 ~~~L~-~L~L~~n~l~~--~~~l~~l-~~L~~L~Ls~N----~---l~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~ 298 (597)
T 3oja_B 231 NVELT-ILKLQHNNLTD--TAWLLNY-PGLVEVDLSYN----E---LEKIMYHPFVKMQ-RLERLYISNNRLVALNLYGQ 298 (597)
T ss_dssp CSCCC-EEECCSSCCCC--CGGGGGC-TTCSEEECCSS----C---CCEEESGGGTTCS-SCCEEECTTSCCCEEECSSS
T ss_pred CCCCC-EEECCCCCCCC--ChhhccC-CCCCEEECCCC----c---cCCCCHHHhcCcc-CCCEEECCCCCCCCCCcccc
Confidence 33 44444444421 2334444 67777777433 1 1111122233444 899999999988876543
Q ss_pred ---------cCCCCcccccHHHhccCCCCEecccCCccCCcCCCcccccccccccccc
Q 038130 426 ---------LEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCT 474 (526)
Q Consensus 426 ---------l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~ 474 (526)
+++|.++.+|.++..+++|+.|+|++|.....-+..+++|+.|++++++
T Consensus 299 ~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 299 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred cCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCC
Confidence 7888999999999999999999999996443333457899999998754
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=1.3e-19 Score=186.21 Aligned_cols=238 Identities=16% Similarity=0.108 Sum_probs=116.1
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD 310 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 310 (526)
..+++|++++|. +..+| +..+++|++|++++|. +..++ +..+++|++|++++|.++.+| ++.+++|++|++++
T Consensus 64 ~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N~-l~~~~-~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~ 136 (457)
T 3bz5_A 64 TGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSNK-LTNLD-VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCAR 136 (457)
T ss_dssp TTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTT
T ss_pred CCCCEEEccCCc-CCeEc--cccCCCCCEEECcCCC-Cceee-cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCC
Confidence 455555555532 33333 4455555555555543 33333 555555555555555555543 55555555555555
Q ss_pred CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCC----
Q 038130 311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSW---- 386 (526)
Q Consensus 311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~---- 386 (526)
|.+.+ ++ ++.+++|++|++++|...+.+ .++.+++|+ .|++++|.+ ..+| +... ++|+.|+++.|.
T Consensus 137 N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~-~L~ls~n~l-~~l~--l~~l-~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 137 NTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT-TLDCSFNKI-TELD--VSQN-KLLNRLNCDTNNITKL 206 (457)
T ss_dssp SCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC-EEECCSSCC-CCCC--CTTC-TTCCEEECCSSCCSCC
T ss_pred Cccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCC-EEECCCCcc-ceec--cccC-CCCCEEECcCCcCCee
Confidence 54332 22 445555555555554444433 244555555 555555555 3333 2222 455555553221
Q ss_pred -------------CCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc---------cCCCCcc-----------c
Q 038130 387 -------------GGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS---------LEKNNFE-----------R 433 (526)
Q Consensus 387 -------------~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~---------l~~~~l~-----------~ 433 (526)
.++.... .++..+ ++|+.|++++|.++++|.. ++.++++ .
T Consensus 207 ~l~~l~~L~~L~Ls~N~l~~------ip~~~l-~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~ 279 (457)
T 3bz5_A 207 DLNQNIQLTFLDCSSNKLTE------IDVTPL-TQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIY 279 (457)
T ss_dssp CCTTCTTCSEEECCSSCCSC------CCCTTC-TTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred ccccCCCCCEEECcCCcccc------cCcccc-CCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCc
Confidence 1111000 112222 2555555555555544322 1111111 2
Q ss_pred ccHHHhccCCCCEecccCCccCCcCCCccccccccccccccccccC------------CCCCCCCEEeccCCC
Q 038130 434 IPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSI------------SYKSSTQLFDLSDNF 494 (526)
Q Consensus 434 lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l------------~~~~~L~~L~l~~c~ 494 (526)
+| .+.+++|+.|++++|..++.+|...++|+.|++++|+.|+.+ ..+++|+.|++++|.
T Consensus 280 ~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 280 FQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAH 350 (457)
T ss_dssp EE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCSEEECCSSC
T ss_pred cc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccccccCCcCcEEECCCCC
Confidence 22 234566666777776666666655555666666665555443 246777777777764
No 32
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=1.9e-19 Score=185.27 Aligned_cols=245 Identities=18% Similarity=0.062 Sum_probs=162.4
Q ss_pred eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccC-ccccCCCCCCEEeccCC
Q 038130 234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELP-SSIGCLSRLLYLYLSDC 311 (526)
Q Consensus 234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~ 311 (526)
..++.++ ..+..+|..+. ++|++|++++|......|. +..+++|++|+|++|.++.++ ..+.++++|++|+|++|
T Consensus 57 ~~v~c~~-~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTR-RGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCS-SCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECC-CCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 3455554 55667776543 6788888888654433343 778888888888888888665 56788888888888887
Q ss_pred ccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCC
Q 038130 312 KRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQ 391 (526)
Q Consensus 312 ~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 391 (526)
.+....+..+..+++|++|++++|......+..+.++++|+ .|++++|+..+.++...+..+++|+.|+++.| ..
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n----~l 208 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM-RLDLGELKKLEYISEGAFEGLFNLKYLNLGMC----NI 208 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCC-EEECCCCTTCCEECTTTTTTCTTCCEEECTTS----CC
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCccc-EEeCCCCCCccccChhhccCCCCCCEEECCCC----cc
Confidence 75544444577788888888888654433344677888888 88888754446676654444488888888443 22
Q ss_pred CCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCC---cccccccc
Q 038130 392 MGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK---LPFNLQGI 468 (526)
Q Consensus 392 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~---~~~~L~~L 468 (526)
... + .+..+ ++|+.|+|++|.+++++ |..+.++++|+.|++++|...+..|. .+++|+.|
T Consensus 209 ~~~-~----~~~~l-~~L~~L~Ls~N~l~~~~-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 209 KDM-P----NLTPL-VGLEELEMSGNHFPEIR-----------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271 (452)
T ss_dssp SSC-C----CCTTC-TTCCEEECTTSCCSEEC-----------GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccc-c----ccccc-ccccEEECcCCcCcccC-----------cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence 111 1 12233 38888888888765532 56777888888888888754333333 24678888
Q ss_pred ccccccccccCC-----CCCCCCEEeccCCCCCCHHHHHHH
Q 038130 469 FAHHCTALSSIS-----YKSSTQLFDLSDNFKLDRNAVRII 504 (526)
Q Consensus 469 ~l~~c~~L~~l~-----~~~~L~~L~l~~c~~l~~~~~~~~ 504 (526)
+++++ .+..++ .+++|+.|++++||--......++
T Consensus 272 ~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l 311 (452)
T 3zyi_A 272 NLAHN-NLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWL 311 (452)
T ss_dssp ECCSS-CCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHH
T ss_pred ECCCC-cCCccChHHhccccCCCEEEccCCCcCCCCCchHH
Confidence 88876 334443 478999999999985444443333
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=9.2e-20 Score=191.20 Aligned_cols=86 Identities=20% Similarity=0.148 Sum_probs=66.8
Q ss_pred HhhcCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcc--cCccccCCCCCC
Q 038130 227 VLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEE--LPSSIGCLSRLL 304 (526)
Q Consensus 227 ~~~~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~--lp~~i~~L~~L~ 304 (526)
+.....+++|++++|......|..+.++++|++|++++|. ++.+|.. .+.+|++|++++|.++. +|..++++++|+
T Consensus 41 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~ 118 (520)
T 2z7x_B 41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118 (520)
T ss_dssp HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc-ccCCccEEeccCCccccccchhhhccCCcce
Confidence 3445678899999865544457778889999999998875 5567766 78888999999888875 567888888888
Q ss_pred EEeccCCccC
Q 038130 305 YLYLSDCKRL 314 (526)
Q Consensus 305 ~L~L~~~~~~ 314 (526)
+|++++|.+.
T Consensus 119 ~L~L~~n~l~ 128 (520)
T 2z7x_B 119 FLGLSTTHLE 128 (520)
T ss_dssp EEEEEESSCC
T ss_pred EEEecCcccc
Confidence 8888887653
No 34
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=3.8e-19 Score=182.36 Aligned_cols=246 Identities=17% Similarity=0.056 Sum_probs=157.3
Q ss_pred eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccC-ccccCCCCCCEEeccCC
Q 038130 234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELP-SSIGCLSRLLYLYLSDC 311 (526)
Q Consensus 234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~ 311 (526)
..++..+ ..+..+|..+. +++++|+|++|......+ .+..+.+|++|+|++|.+..++ ..+.++++|++|+|++|
T Consensus 46 ~~v~c~~-~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVR-KNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCS-CCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCC-CCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 3455554 55667776553 677888888765333332 3777888888888888887665 45777888888888887
Q ss_pred ccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCC
Q 038130 312 KRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQ 391 (526)
Q Consensus 312 ~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 391 (526)
.+....+..+..+++|++|++++|......+..+.++++|+ .|++++|+..+.++...+..+++|+.|+++.| ..
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~-~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n----~l 197 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR-RLDLGELKRLSYISEGAFEGLSNLRYLNLAMC----NL 197 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC-EEECCCCTTCCEECTTTTTTCSSCCEEECTTS----CC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccC-EeCCCCCCCcceeCcchhhcccccCeecCCCC----cC
Confidence 65443344577788888888887654433344677778888 88887754446666654444478888888433 21
Q ss_pred CCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCC---cccccccc
Q 038130 392 MGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK---LPFNLQGI 468 (526)
Q Consensus 392 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~---~~~~L~~L 468 (526)
.... .+..+ ++|+.|+|++|.+++++ |..+..+++|+.|++++|......+. .+++|+.|
T Consensus 198 ~~~~-----~~~~l-~~L~~L~Ls~N~l~~~~-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 260 (440)
T 3zyj_A 198 REIP-----NLTPL-IKLDELDLSGNHLSAIR-----------PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260 (440)
T ss_dssp SSCC-----CCTTC-SSCCEEECTTSCCCEEC-----------TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEE
T ss_pred cccc-----ccCCC-cccCEEECCCCccCccC-----------hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEE
Confidence 1111 12233 37888888887665532 45667778888888887743332232 24677778
Q ss_pred ccccccccccC-----CCCCCCCEEeccCCCCCCHHHHHHHH
Q 038130 469 FAHHCTALSSI-----SYKSSTQLFDLSDNFKLDRNAVRIIV 505 (526)
Q Consensus 469 ~l~~c~~L~~l-----~~~~~L~~L~l~~c~~l~~~~~~~~~ 505 (526)
+++++. ++.+ ..+++|+.|++++||--......++.
T Consensus 261 ~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~ 301 (440)
T 3zyj_A 261 NLAHNN-LTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLS 301 (440)
T ss_dssp ECTTSC-CCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHH
T ss_pred ECCCCC-CCccChhHhccccCCCEEEcCCCCccCCCCchHHH
Confidence 877763 3333 35789999999999865544444443
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=5.3e-19 Score=181.64 Aligned_cols=194 Identities=19% Similarity=0.175 Sum_probs=142.7
Q ss_pred cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130 230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS 309 (526)
Q Consensus 230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 309 (526)
...+++|++++| .+..+| .+..+++|++|++++|. +..+| +..+++|++|++++|.++.+| ++++++|++|+++
T Consensus 41 l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 41 LATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNN-ITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD 114 (457)
T ss_dssp HTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSC-CSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECC
T ss_pred cCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCCc-CCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEECC
Confidence 468999999996 555677 58899999999999975 55566 889999999999999999886 8999999999999
Q ss_pred CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCC
Q 038130 310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGD 389 (526)
Q Consensus 310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 389 (526)
+|.+.+ +| ++.+++|++|++++|... .++ ++++++|+ .|++++|...+.++ +..+ ++|+.|+++.|
T Consensus 115 ~N~l~~-l~--~~~l~~L~~L~l~~N~l~-~l~--l~~l~~L~-~L~l~~n~~~~~~~--~~~l-~~L~~L~ls~n---- 180 (457)
T 3bz5_A 115 TNKLTK-LD--VSQNPLLTYLNCARNTLT-EID--VSHNTQLT-ELDCHLNKKITKLD--VTPQ-TQLTTLDCSFN---- 180 (457)
T ss_dssp SSCCSC-CC--CTTCTTCCEEECTTSCCS-CCC--CTTCTTCC-EEECTTCSCCCCCC--CTTC-TTCCEEECCSS----
T ss_pred CCcCCe-ec--CCCCCcCCEEECCCCccc-eec--cccCCcCC-EEECCCCCcccccc--cccC-CcCCEEECCCC----
Confidence 997554 65 889999999999997644 454 88999999 99999996546663 4455 99999999554
Q ss_pred CCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc---------cCCCCcccccHHHhccCCCCEecccCC
Q 038130 390 KQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS---------LEKNNFERIPESIIQLSRLVVLNLNYC 452 (526)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~---------l~~~~l~~lp~~l~~l~~L~~L~L~~~ 452 (526)
.... . ++..+. +|+.|++++|.+++++-. +++|.++.+| +..+++|+.|++++|
T Consensus 181 ~l~~-l-----~l~~l~-~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 181 KITE-L-----DVSQNK-LLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CCCC-C-----CCTTCT-TCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS
T ss_pred ccce-e-----ccccCC-CCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCC
Confidence 2111 1 122222 566666666655554311 4555555555 455556666666555
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=9.4e-20 Score=194.85 Aligned_cols=155 Identities=21% Similarity=0.134 Sum_probs=125.7
Q ss_pred hcCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccC-ccccCCCCCCEE
Q 038130 229 IVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELP-SSIGCLSRLLYL 306 (526)
Q Consensus 229 ~~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L 306 (526)
....+++|++++|......|..+.++++|++|++++|......|. +.++.+|++|++++|.+..+| ..++++++|++|
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133 (606)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEE
Confidence 346889999999765555577789999999999999875554464 899999999999999998776 679999999999
Q ss_pred eccCCccCc-ccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccc---eeeccccccccccChhhhcccCCcceEEc
Q 038130 307 YLSDCKRLK-SLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNS---TLYAKGTAAKREVPSSIVGSNNNLYELSL 382 (526)
Q Consensus 307 ~L~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~---~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 382 (526)
++++|.+.+ .+|..++++++|++|++++|......|..++.+++|+. .|++++|.+ ..++...+.. .+|+.|++
T Consensus 134 ~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l-~~~~~~~~~~-~~L~~L~L 211 (606)
T 3vq2_A 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQG-IKLHELTL 211 (606)
T ss_dssp ECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCC-CEECTTTTTT-CEEEEEEE
T ss_pred eCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCc-ceeCcccccC-ceeeeeec
Confidence 999998665 67999999999999999998766666777777776541 688888888 6677766666 47888888
Q ss_pred ccC
Q 038130 383 DRS 385 (526)
Q Consensus 383 ~~~ 385 (526)
+.|
T Consensus 212 ~~n 214 (606)
T 3vq2_A 212 RGN 214 (606)
T ss_dssp ESC
T ss_pred cCC
Confidence 654
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=5.3e-19 Score=174.16 Aligned_cols=232 Identities=20% Similarity=0.255 Sum_probs=176.3
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC--CCCCCCcccEEEecccCCccc-CccccCCCCCCEEe
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP--EFSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLY 307 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~ 307 (526)
..++.+++++ ..+..+|..+. +.|++|++++|. ++.++ .+..+++|++|++++|.++.+ |..++.+++|++|+
T Consensus 31 c~l~~l~~~~-~~l~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSD-LGLEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTT-SCCCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecC-CCccccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 3578889888 45677887553 789999999976 44444 388999999999999999976 78899999999999
Q ss_pred ccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecccccccc--ccChhhhcccCCcceEEcccC
Q 038130 308 LSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKR--EVPSSIVGSNNNLYELSLDRS 385 (526)
Q Consensus 308 L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~--~~~~~l~~~~~~L~~L~l~~~ 385 (526)
+++|. +..+|..+. ++|++|++++|......+..+.++++|+ .|++++|.+.. ..+..+..+ ++|+.|+++.|
T Consensus 107 Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~~n 181 (330)
T 1xku_A 107 LSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMI-VVELGTNPLKSSGIENGAFQGM-KKLSYIRIADT 181 (330)
T ss_dssp CCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCC-EEECCSSCCCGGGBCTTGGGGC-TTCCEEECCSS
T ss_pred CCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCcccc-EEECCCCcCCccCcChhhccCC-CCcCEEECCCC
Confidence 99987 457887664 7999999999765555555688999999 99999998832 445556555 99999999543
Q ss_pred CCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCC---cc
Q 038130 386 WGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK---LP 462 (526)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~---~~ 462 (526)
....... ...++|++|++++|.+++++ |..+..+++|+.|++++|...+..+. .+
T Consensus 182 ----~l~~l~~-------~~~~~L~~L~l~~n~l~~~~-----------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 182 ----NITTIPQ-------GLPPSLTELHLDGNKITKVD-----------AASLKGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp ----CCCSCCS-------SCCTTCSEEECTTSCCCEEC-----------TGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred ----ccccCCc-------cccccCCEEECCCCcCCccC-----------HHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence 2211111 11259999999999765532 56788999999999999954333332 25
Q ss_pred ccccccccccccccccCC----CCCCCCEEeccCCC
Q 038130 463 FNLQGIFAHHCTALSSIS----YKSSTQLFDLSDNF 494 (526)
Q Consensus 463 ~~L~~L~l~~c~~L~~l~----~~~~L~~L~l~~c~ 494 (526)
++|+.|+++++. +..++ .+++|++|++++|+
T Consensus 240 ~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 240 PHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp TTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSC
T ss_pred CCCCEEECCCCc-CccCChhhccCCCcCEEECCCCc
Confidence 789999999884 34544 58999999999995
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=3.6e-19 Score=192.92 Aligned_cols=153 Identities=17% Similarity=0.103 Sum_probs=95.4
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCc-cccCCCCCCEEec
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYL 308 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L 308 (526)
.++++|++++|......+..+.++++|++|++++|......|. +..+++|++|++++|.++.+|. .++++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 4567777777543333334567777777777777654433343 5667777777777777776665 4777777777777
Q ss_pred cCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhc-ccCCcceEEccc
Q 038130 309 SDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVG-SNNNLYELSLDR 384 (526)
Q Consensus 309 ~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~-~~~~L~~L~l~~ 384 (526)
++|.+.+..|..++++++|++|++++|......|..++++++|+ .|++++|.+.+..+..+.. .+++|+.|+++.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ-ELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCC-EEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCC-EEEccCCcccccCHHHhhccccccccEEECCC
Confidence 77765444445667777777777777665555566667777777 7777777663333332211 125677777744
No 39
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=1.6e-19 Score=185.92 Aligned_cols=220 Identities=22% Similarity=0.214 Sum_probs=170.8
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCcc-ccCCCCCCEEec
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYL 308 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L 308 (526)
..+++|++++|......+..+.++++|++|++++|......+ .+.++.+|++|+|++|.++.+|.. ++.+++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 578999999976655567788999999999999986444443 388999999999999999988765 889999999999
Q ss_pred cCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCC-cccCcccccceeeccccccccccChhhhcccCCcceEEcccCCC
Q 038130 309 SDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPD-DFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWG 387 (526)
Q Consensus 309 ~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 387 (526)
++|.+....+..+.++++|++|++++|+.++.+|. .+.++++|+ .|++++|.+ ..+|. +..+ ++|+.|+++.|
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~-~L~L~~n~l-~~~~~-~~~l-~~L~~L~Ls~N-- 228 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK-YLNLGMCNI-KDMPN-LTPL-VGLEELEMSGN-- 228 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCC-EEECTTSCC-SSCCC-CTTC-TTCCEEECTTS--
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCC-EEECCCCcc-ccccc-cccc-ccccEEECcCC--
Confidence 99986654555788999999999999888888876 588999999 999999999 66664 5555 99999999544
Q ss_pred CCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCC----ccc
Q 038130 388 GDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK----LPF 463 (526)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~----~~~ 463 (526)
. .....+..+.++. +|+.|++++|.++.++ |..+..+++|+.|+|++| .+..+|. .++
T Consensus 229 --~---l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~-----------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 229 --H---FPEIRPGSFHGLS-SLKKLWVMNSQVSLIE-----------RNAFDGLASLVELNLAHN-NLSSLPHDLFTPLR 290 (452)
T ss_dssp --C---CSEECGGGGTTCT-TCCEEECTTSCCCEEC-----------TTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCT
T ss_pred --c---CcccCcccccCcc-CCCEEEeCCCcCceEC-----------HHHhcCCCCCCEEECCCC-cCCccChHHhcccc
Confidence 2 1221222244454 9999999999876543 456778888999999888 4556653 246
Q ss_pred ccccccccccc
Q 038130 464 NLQGIFAHHCT 474 (526)
Q Consensus 464 ~L~~L~l~~c~ 474 (526)
+|+.|++++++
T Consensus 291 ~L~~L~L~~Np 301 (452)
T 3zyi_A 291 YLVELHLHHNP 301 (452)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEccCCC
Confidence 78888887653
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=6.5e-19 Score=173.68 Aligned_cols=243 Identities=22% Similarity=0.252 Sum_probs=186.2
Q ss_pred cceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCccc-CccccCCCCCCEEecc
Q 038130 232 TLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLYLS 309 (526)
Q Consensus 232 ~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~ 309 (526)
.++.++++++ .+..+|..+ .++|++|++++|......| .+..+++|++|++++|.++.+ |..++++++|++|+++
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCC-CccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5789999884 567888766 4799999999986443334 489999999999999999976 7789999999999999
Q ss_pred CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecccccccc--ccChhhhcccCCcceEEcccCCC
Q 038130 310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKR--EVPSSIVGSNNNLYELSLDRSWG 387 (526)
Q Consensus 310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~ 387 (526)
+|. +..+|..+. ++|++|++++|......+..+.++++|+ .|++++|.+.. ..+..+ ..+ +|+.|+++.|
T Consensus 111 ~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~-~~l-~L~~L~l~~n-- 182 (332)
T 2ft3_A 111 KNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN-CIEMGGNPLENSGFEPGAF-DGL-KLNYLRISEA-- 182 (332)
T ss_dssp SSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCC-EEECCSCCCBGGGSCTTSS-CSC-CCSCCBCCSS--
T ss_pred CCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCC-EEECCCCccccCCCCcccc-cCC-ccCEEECcCC--
Confidence 987 457887665 8999999999765544444689999999 99999998842 334444 332 8999999543
Q ss_pred CCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc------------cCCCCcccccH-HHhccCCCCEecccCCcc
Q 038130 388 GDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS------------LEKNNFERIPE-SIIQLSRLVVLNLNYCER 454 (526)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~------------l~~~~l~~lp~-~l~~l~~L~~L~L~~~~~ 454 (526)
..... +. ...++|++|++++|.+++++.. +++|.++.++. ++..+++|+.|++++| .
T Consensus 183 --~l~~l----~~---~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~ 252 (332)
T 2ft3_A 183 --KLTGI----PK---DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-K 252 (332)
T ss_dssp --BCSSC----CS---SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-C
T ss_pred --CCCcc----Cc---cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-c
Confidence 22111 11 1225999999999999887632 78889988774 7889999999999998 5
Q ss_pred CCcCCCc---cccccccccccccccccCC-----------CCCCCCEEeccCCCCC
Q 038130 455 LQSLPKL---PFNLQGIFAHHCTALSSIS-----------YKSSTQLFDLSDNFKL 496 (526)
Q Consensus 455 l~~lp~~---~~~L~~L~l~~c~~L~~l~-----------~~~~L~~L~l~~c~~l 496 (526)
+..+|.. +++|+.|+++++. ++.++ ..++|+.|++++||..
T Consensus 253 l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 253 LSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CeecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCccc
Confidence 6688863 5689999998864 33332 1467999999999854
No 41
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=4e-19 Score=171.26 Aligned_cols=230 Identities=25% Similarity=0.357 Sum_probs=159.8
Q ss_pred eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-C-CCCCCcccEEEecccCCccc-CccccCCCCCCEEeccC
Q 038130 234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-E-FSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLYLSD 310 (526)
Q Consensus 234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~-~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~ 310 (526)
+.++.++ ..+..+|..+ .++|++|++++|. +..++ . +..+++|++|++++|.++.+ |..++.+++|++|++++
T Consensus 14 ~~~~c~~-~~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAVPVGI--PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCS-SCCSSCCTTC--CTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCc-CCcccCCcCC--CCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 4666666 5667777644 5689999998875 44444 3 78888999999998888866 66788899999999998
Q ss_pred CccCccc-CcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCC
Q 038130 311 CKRLKSL-PSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGD 389 (526)
Q Consensus 311 ~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 389 (526)
|..++.+ |..+..+++|++|++++|......|..+.++++|+ .|++++|.+ ..++......+++|+.|+++.|
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n---- 163 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ-YLYLQDNAL-QALPDDTFRDLGNLTHLFLHGN---- 163 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC-EEECCSSCC-CCCCTTTTTTCTTCCEEECCSS----
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC-EEECCCCcc-cccCHhHhccCCCccEEECCCC----
Confidence 8634444 67788889999999998776666677788888898 999999888 5555543333388888888443
Q ss_pred CCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCccccccccc
Q 038130 390 KQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIF 469 (526)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~ 469 (526)
.. .......+.++ ++|+.|++++|.++++ .|.++..+++|+.|++++|. +..+|.
T Consensus 164 ~l---~~~~~~~~~~l-~~L~~L~l~~n~l~~~-----------~~~~~~~l~~L~~L~l~~n~-l~~~~~--------- 218 (285)
T 1ozn_A 164 RI---SSVPERAFRGL-HSLDRLLLHQNRVAHV-----------HPHAFRDLGRLMTLYLFANN-LSALPT--------- 218 (285)
T ss_dssp CC---CEECTTTTTTC-TTCCEEECCSSCCCEE-----------CTTTTTTCTTCCEEECCSSC-CSCCCH---------
T ss_pred cc---cccCHHHhcCc-cccCEEECCCCccccc-----------CHhHccCcccccEeeCCCCc-CCcCCH---------
Confidence 21 11111112333 3888888888876542 25667778888888888883 333321
Q ss_pred cccccccccCCCCCCCCEEeccCCCCCCHHHHHHHH
Q 038130 470 AHHCTALSSISYKSSTQLFDLSDNFKLDRNAVRIIV 505 (526)
Q Consensus 470 l~~c~~L~~l~~~~~L~~L~l~~c~~l~~~~~~~~~ 505 (526)
..+..+++|+.|++++|+-.......++.
T Consensus 219 -------~~~~~l~~L~~L~l~~N~~~c~~~~~~~~ 247 (285)
T 1ozn_A 219 -------EALAPLRALQYLRLNDNPWVCDCRARPLW 247 (285)
T ss_dssp -------HHHTTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred -------HHcccCcccCEEeccCCCccCCCCcHHHH
Confidence 12335678889999998866555544443
No 42
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=2e-19 Score=184.55 Aligned_cols=218 Identities=23% Similarity=0.274 Sum_probs=165.4
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC--CCCCCCcccEEEecccCCcccCc-cccCCCCCCEEe
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP--EFSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLY 307 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~ 307 (526)
..++.|++++|......+..+.++++|++|++++|. +..++ .+.++.+|++|+|++|.++.+|. .+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 567899999976554555778899999999999976 44444 38889999999999999998876 589999999999
Q ss_pred ccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCC-cccCcccccceeeccccccccccChhhhcccCCcceEEcccCC
Q 038130 308 LSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPD-DFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSW 386 (526)
Q Consensus 308 L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 386 (526)
+++|.+....+..+..+++|++|++++|+.+..++. .+.++++|+ .|++++|.+ ..+|. +..+ ++|+.|+++.|
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~-~L~L~~n~l-~~~~~-~~~l-~~L~~L~Ls~N- 217 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR-YLNLAMCNL-REIPN-LTPL-IKLDELDLSGN- 217 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCC-EEECTTSCC-SSCCC-CTTC-SSCCEEECTTS-
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccC-eecCCCCcC-ccccc-cCCC-cccCEEECCCC-
Confidence 999986655555788999999999999888887776 588899999 999999999 67774 5555 89999999544
Q ss_pred CCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCC----cc
Q 038130 387 GGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK----LP 462 (526)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~----~~ 462 (526)
.. ....+..+.++. +|+.|++++|.++.++ |..+..+++|+.|+|++| .+..+|. .+
T Consensus 218 ---~l---~~~~~~~~~~l~-~L~~L~L~~n~l~~~~-----------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 278 (440)
T 3zyj_A 218 ---HL---SAIRPGSFQGLM-HLQKLWMIQSQIQVIE-----------RNAFDNLQSLVEINLAHN-NLTLLPHDLFTPL 278 (440)
T ss_dssp ---CC---CEECTTTTTTCT-TCCEEECTTCCCCEEC-----------TTSSTTCTTCCEEECTTS-CCCCCCTTTTSSC
T ss_pred ---cc---CccChhhhccCc-cCCEEECCCCceeEEC-----------hhhhcCCCCCCEEECCCC-CCCccChhHhccc
Confidence 21 111122244444 9999999999876643 445667788888888887 4445553 24
Q ss_pred ccccccccccc
Q 038130 463 FNLQGIFAHHC 473 (526)
Q Consensus 463 ~~L~~L~l~~c 473 (526)
++|+.|+++++
T Consensus 279 ~~L~~L~L~~N 289 (440)
T 3zyj_A 279 HHLERIHLHHN 289 (440)
T ss_dssp TTCCEEECCSS
T ss_pred cCCCEEEcCCC
Confidence 57777777754
No 43
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=2.8e-19 Score=184.26 Aligned_cols=112 Identities=21% Similarity=0.179 Sum_probs=71.5
Q ss_pred eeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc--------
Q 038130 354 TLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS-------- 425 (526)
Q Consensus 354 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~-------- 425 (526)
.|++++|.+.+..|..+..+ ++|+.|+++.| .. ....+..+.++. +|+.|++++|.+++++..
T Consensus 279 ~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n----~l---~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 279 TCDLSKSKIFALLKSVFSHF-TDLEQLTLAQN----EI---NKIDDNAFWGLT-HLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp EEECCSSCCCEECTTTTTTC-TTCCEEECTTS----CC---CEECTTTTTTCT-TCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred EEEecCccccccchhhcccC-CCCCEEECCCC----cc---cccChhHhcCcc-cCCEEECCCCccCCcChhHhcCcccC
Confidence 44444444433333334333 66777777333 11 111111233444 899999999988775432
Q ss_pred ----cCCCCcccc-cHHHhccCCCCEecccCCccCCcCCC----ccccccccccccccc
Q 038130 426 ----LEKNNFERI-PESIIQLSRLVVLNLNYCERLQSLPK----LPFNLQGIFAHHCTA 475 (526)
Q Consensus 426 ----l~~~~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~----~~~~L~~L~l~~c~~ 475 (526)
+++|.++.+ |.++..+++|+.|++++| .++.+|. .+++|+.|++++++-
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCc
Confidence 788888877 678899999999999998 4556664 357899999987654
No 44
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=5.6e-19 Score=170.23 Aligned_cols=204 Identities=22% Similarity=0.222 Sum_probs=160.4
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccC-Cccc-CccccCCCCCCEEe
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTA-IEEL-PSSIGCLSRLLYLY 307 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~-i~~l-p~~i~~L~~L~~L~ 307 (526)
..++.|++++|......+..+..+++|++|++++|......| .+..+++|++|++++|. ++.+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 578999999965444444678899999999999986444435 48899999999999997 8877 67799999999999
Q ss_pred ccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCC
Q 038130 308 LSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWG 387 (526)
Q Consensus 308 L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 387 (526)
+++|.+....|..+..+++|++|++++|......+..++++++|+ .|++++|.+ ..++......+++|+.|+++.|
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n-- 187 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT-HLFLHGNRI-SSVPERAFRGLHSLDRLLLHQN-- 187 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSCC-CEECTTTTTTCTTCCEEECCSS--
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc-EEECCCCcc-cccCHHHhcCccccCEEECCCC--
Confidence 999987776678889999999999999765554455689999999 999999999 5666653343499999999554
Q ss_pred CCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccC
Q 038130 388 GDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERL 455 (526)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l 455 (526)
.. ....+..+..+. +|+.|++++|.++++| +..+..+++|+.|++++|+..
T Consensus 188 --~l---~~~~~~~~~~l~-~L~~L~l~~n~l~~~~-----------~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 188 --RV---AHVHPHAFRDLG-RLMTLYLFANNLSALP-----------TEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp --CC---CEECTTTTTTCT-TCCEEECCSSCCSCCC-----------HHHHTTCTTCCEEECCSSCEE
T ss_pred --cc---cccCHhHccCcc-cccEeeCCCCcCCcCC-----------HHHcccCcccCEEeccCCCcc
Confidence 21 111122233444 9999999999876644 467889999999999999744
No 45
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=2.9e-19 Score=188.66 Aligned_cols=92 Identities=25% Similarity=0.183 Sum_probs=58.1
Q ss_pred cccEEEccCCCCCCCCCc-----------cCCCCcccccHHH------------------hccCCCCEecccCCccCCcC
Q 038130 408 TLTSLYLNYCGILELPDS-----------LEKNNFERIPESI------------------IQLSRLVVLNLNYCERLQSL 458 (526)
Q Consensus 408 ~L~~L~L~~~~~~~lp~~-----------l~~~~l~~lp~~l------------------~~l~~L~~L~L~~~~~l~~l 458 (526)
+|++|++++|.++.+|.. +++|.++.+|..+ ..+++|+.|++++| .++.+
T Consensus 388 ~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~i 466 (549)
T 2z81_A 388 NLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTL 466 (549)
T ss_dssp TCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSC
T ss_pred CCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcC
Confidence 666666666666666543 4445554444321 24667777777776 44566
Q ss_pred CCc--cccccccccccccccccC-----CCCCCCCEEeccCCCCCCHHHH
Q 038130 459 PKL--PFNLQGIFAHHCTALSSI-----SYKSSTQLFDLSDNFKLDRNAV 501 (526)
Q Consensus 459 p~~--~~~L~~L~l~~c~~L~~l-----~~~~~L~~L~l~~c~~l~~~~~ 501 (526)
|.. +++|+.|+++++. ++.+ ..+++|+.|++++||-......
T Consensus 467 p~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 467 PDASLFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CCGGGCTTCCEEECCSSC-CCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred CCcccCccCCEEecCCCc-cCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 642 5677777777763 3332 3478999999999997776663
No 46
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=2.6e-18 Score=182.03 Aligned_cols=229 Identities=25% Similarity=0.301 Sum_probs=169.0
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD 310 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 310 (526)
++++.|++++| .+..+|. .+++|++|++++|. ++.+|. .+++|++|++++|.++.+|. .+++|++|++++
T Consensus 61 ~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~ 130 (622)
T 3g06_A 61 AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQ-LTSLPV--LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFG 130 (622)
T ss_dssp TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCC-CSCCCC--CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCS
T ss_pred CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCc-CCcCCC--CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCC
Confidence 56788888885 4556776 46788888888865 556666 67888888888888888876 567888888888
Q ss_pred CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCC
Q 038130 311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDK 390 (526)
Q Consensus 311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 390 (526)
|. +..+|.. +++|++|++++|. +..+|..+ .+|+ .|++++|.+ ..+| ..+++|+.|+++.| .
T Consensus 131 N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~~---~~L~-~L~L~~N~l-~~l~----~~~~~L~~L~Ls~N----~ 192 (622)
T 3g06_A 131 NQ-LTSLPVL---PPGLQELSVSDNQ-LASLPALP---SELC-KLWAYNNQL-TSLP----MLPSGLQELSVSDN----Q 192 (622)
T ss_dssp SC-CSCCCCC---CTTCCEEECCSSC-CSCCCCCC---TTCC-EEECCSSCC-SCCC----CCCTTCCEEECCSS----C
T ss_pred CC-CCcCCCC---CCCCCEEECcCCc-CCCcCCcc---CCCC-EEECCCCCC-CCCc----ccCCCCcEEECCCC----C
Confidence 76 4457663 4788888888864 45566543 3455 888888888 5566 22388888888443 2
Q ss_pred CCCCCCCcccCcccccCcccEEEccCCCCCCCCCc--------cCCCCcccccHHHhccCCCCEecccCCccCCcCCCcc
Q 038130 391 QMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS--------LEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLP 462 (526)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~--------l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~ 462 (526)
.... + ..+++|+.|++++|.++.+|.. +++|.++.+| ..+++|+.|++++| .+..+|..+
T Consensus 193 l~~l-~-------~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~~~ 260 (622)
T 3g06_A 193 LASL-P-------TLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPMLP 260 (622)
T ss_dssp CSCC-C-------CCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCCCC
T ss_pred CCCC-C-------CccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCccc
Confidence 1111 1 1224888888888888887754 7788888888 56799999999998 677899888
Q ss_pred ccccccccccccccccCC----CCCCCCEEeccCCCCCCHHHH
Q 038130 463 FNLQGIFAHHCTALSSIS----YKSSTQLFDLSDNFKLDRNAV 501 (526)
Q Consensus 463 ~~L~~L~l~~c~~L~~l~----~~~~L~~L~l~~c~~l~~~~~ 501 (526)
++|+.|++++| .+..++ .+++|+.|++++|+- .....
T Consensus 261 ~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l-~~~~~ 301 (622)
T 3g06_A 261 SGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL-SERTL 301 (622)
T ss_dssp TTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC-CHHHH
T ss_pred ccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC-CCcCH
Confidence 99999999987 444554 589999999999974 44433
No 47
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=2.8e-19 Score=175.10 Aligned_cols=223 Identities=16% Similarity=0.056 Sum_probs=167.3
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD 310 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 310 (526)
.+++.|++++|......|..+..+++|++|++++|. +...+.+..+++|++|++++|.++.+|. .++|++|++++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~ 108 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN 108 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECcCCccccccC----CCCcCEEECCC
Confidence 478999999975555555788999999999999976 4444458899999999999999987763 38999999999
Q ss_pred CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCC
Q 038130 311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDK 390 (526)
Q Consensus 311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 390 (526)
|.+.+..+. .+++|++|++++|......|..++.+++|+ .|++++|.+.+..+..+...+++|+.|+++.| .
T Consensus 109 n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N----~ 180 (317)
T 3o53_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQ-YLDLKLNEIDTVNFAELAASSDTLEHLNLQYN----F 180 (317)
T ss_dssp SCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEE-EEECTTSCCCEEEGGGGGGGTTTCCEEECTTS----C
T ss_pred CccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCC-EEECCCCCCCcccHHHHhhccCcCCEEECCCC----c
Confidence 986554433 478899999999876666666888999999 99999999955556666544599999999544 2
Q ss_pred CCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCcccccccccc
Q 038130 391 QMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFA 470 (526)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l 470 (526)
...... ... .++|+.|++++|.++ .+|..+..+++|+.|++++| .+..+|.
T Consensus 181 l~~~~~-----~~~-l~~L~~L~Ls~N~l~------------~l~~~~~~l~~L~~L~L~~N-~l~~l~~---------- 231 (317)
T 3o53_A 181 IYDVKG-----QVV-FAKLKTLDLSSNKLA------------FMGPEFQSAAGVTWISLRNN-KLVLIEK---------- 231 (317)
T ss_dssp CCEEEC-----CCC-CTTCCEEECCSSCCC------------EECGGGGGGTTCSEEECTTS-CCCEECT----------
T ss_pred Cccccc-----ccc-cccCCEEECCCCcCC------------cchhhhcccCcccEEECcCC-cccchhh----------
Confidence 211111 112 349999999998654 45556888999999999998 3444442
Q ss_pred ccccccccCCCCCCCCEEeccCCCCCCHHHHH
Q 038130 471 HHCTALSSISYKSSTQLFDLSDNFKLDRNAVR 502 (526)
Q Consensus 471 ~~c~~L~~l~~~~~L~~L~l~~c~~l~~~~~~ 502 (526)
.+..+++|+.|++++|+-.......
T Consensus 232 -------~~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 232 -------ALRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp -------TCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred -------HhhcCCCCCEEEccCCCccCcCHHH
Confidence 2345688999999999766444333
No 48
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=4.9e-19 Score=187.78 Aligned_cols=145 Identities=19% Similarity=0.166 Sum_probs=87.6
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccC-ccccCCCCCCEEec
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELP-SSIGCLSRLLYLYL 308 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L 308 (526)
..++.|++++|......+..+.++++|++|++++|......|. +.++++|++|++++|.++.+| ..++++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 3567777777543333344566677777777777643322232 667777777777777776554 45677777777777
Q ss_pred cCCccCcccCcCCCCCCCCcEEeecCCCCCC-cCCCcccCcccccceeeccccccccccChhhhcccCCc
Q 038130 309 SDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQ-RLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNL 377 (526)
Q Consensus 309 ~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L 377 (526)
++|.+....+..++++++|++|++++|.... .+|..++++++|+ .|++++|.+.+..+..+..+ ++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l-~~L 175 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE-HLDLSSNKIQSIYCTDLRVL-HQM 175 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC-EEECTTSCCCEECGGGGHHH-HTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCC-EEeCcCCccceecHHHccch-hcc
Confidence 7765333222246677777777777755443 3566677777777 77777776633333333333 444
No 49
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=4.1e-19 Score=184.13 Aligned_cols=220 Identities=16% Similarity=0.060 Sum_probs=170.1
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD 310 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 310 (526)
++++.|++++|......|..+..+++|++|++++|. +...+.+..+++|++|++++|.++.+|.. ++|++|++++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~ 108 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNYVQELLVG----PSIETLHAAN 108 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCS
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCcCCCCCCC----CCcCEEECcC
Confidence 378999999976655556789999999999999976 44444489999999999999999887743 8999999999
Q ss_pred CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCC
Q 038130 311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDK 390 (526)
Q Consensus 311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 390 (526)
|.+.+..+. .+++|++|++++|...+..|..++++++|+ .|++++|.+.+..|..+...+++|+.|+++.| .
T Consensus 109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N----~ 180 (487)
T 3oja_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQ-YLDLKLNEIDTVNFAELAASSDTLEHLNLQYN----F 180 (487)
T ss_dssp SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEE-EEECTTSCCCEEEGGGGGGGTTTCCEEECTTS----C
T ss_pred CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCC-EEECCCCCCCCcChHHHhhhCCcccEEecCCC----c
Confidence 986554443 478999999999887777788899999999 99999999977777777744599999999554 2
Q ss_pred CCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCcccccccccc
Q 038130 391 QMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFA 470 (526)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l 470 (526)
.... . +... .++|+.|+|++|.+++ +|..+..+++|+.|++++|. +..+|.
T Consensus 181 l~~~---~--~~~~-l~~L~~L~Ls~N~l~~------------~~~~~~~l~~L~~L~Ls~N~-l~~lp~---------- 231 (487)
T 3oja_A 181 IYDV---K--GQVV-FAKLKTLDLSSNKLAF------------MGPEFQSAAGVTWISLRNNK-LVLIEK---------- 231 (487)
T ss_dssp CCEE---E--CCCC-CTTCCEEECCSSCCCE------------ECGGGGGGTTCSEEECTTSC-CCEECT----------
T ss_pred cccc---c--cccc-CCCCCEEECCCCCCCC------------CCHhHcCCCCccEEEecCCc-Ccccch----------
Confidence 1111 1 1112 3599999999986554 45568889999999999984 444442
Q ss_pred ccccccccCCCCCCCCEEeccCCCCCCHH
Q 038130 471 HHCTALSSISYKSSTQLFDLSDNFKLDRN 499 (526)
Q Consensus 471 ~~c~~L~~l~~~~~L~~L~l~~c~~l~~~ 499 (526)
.+..+++|+.|++++|+-....
T Consensus 232 -------~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 232 -------ALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp -------TCCCCTTCCEEECTTCCBCHHH
T ss_pred -------hhccCCCCCEEEcCCCCCcCcc
Confidence 2345678899999998766443
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=2.1e-18 Score=182.64 Aligned_cols=263 Identities=20% Similarity=0.136 Sum_probs=180.6
Q ss_pred hcCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccC--ccccCCCCCCEE
Q 038130 229 IVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELP--SSIGCLSRLLYL 306 (526)
Q Consensus 229 ~~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L 306 (526)
...++++|++++|......|..+.++++|++|++++|. +..+|.. .+.+|++|++++|.++.+| ..++++++|++|
T Consensus 74 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L 151 (562)
T 3a79_B 74 FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL 151 (562)
T ss_dssp TCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEE
T ss_pred cCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEE
Confidence 34678899999875554557778888999999999875 5577766 7888899999999888654 678888888888
Q ss_pred eccCCccCcc-------------------------cCcCCCCC--------------------------C----------
Q 038130 307 YLSDCKRLKS-------------------------LPSSLSQL--------------------------K---------- 325 (526)
Q Consensus 307 ~L~~~~~~~~-------------------------lp~~i~~l--------------------------~---------- 325 (526)
++++|.+... .|..+..+ +
T Consensus 152 ~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 231 (562)
T 3a79_B 152 GLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN 231 (562)
T ss_dssp EEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECC
T ss_pred ecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccc
Confidence 8888764321 11111111 1
Q ss_pred ---------------------------------------------CCcEEeecCCCCCCcCCCcc---------------
Q 038130 326 ---------------------------------------------SLKLLNLHGCSNLQRLPDDF--------------- 345 (526)
Q Consensus 326 ---------------------------------------------~L~~L~l~~~~~~~~lp~~~--------------- 345 (526)
+|++|++++|...+.+|..+
T Consensus 232 ~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~ 311 (562)
T 3a79_B 232 DENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH 311 (562)
T ss_dssp STTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEE
T ss_pred ccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhh
Confidence 34444444433333455443
Q ss_pred --------------------------------------cCcccccceeeccccccccccChhhhcccCCcceEEcccCCC
Q 038130 346 --------------------------------------GNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWG 387 (526)
Q Consensus 346 --------------------------------------~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 387 (526)
+.+++|+ .|++++|.+.+.+|..+..+ ++|+.|+++.|
T Consensus 312 ~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~N-- 387 (562)
T 3a79_B 312 VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT-FLNFTQNVFTDSVFQGCSTL-KRLQTLILQRN-- 387 (562)
T ss_dssp EEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCC-EEECCSSCCCTTTTTTCCSC-SSCCEEECCSS--
T ss_pred cccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCce-EEECCCCccccchhhhhccc-CCCCEEECCCC--
Confidence 5677888 99999999966677777666 99999999544
Q ss_pred CCCCCCCCCCcccCcccccCcccEEEccCCCCCC-CCCc------------cCCCCcc-cccHHHhcc-CCCCEecccCC
Q 038130 388 GDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILE-LPDS------------LEKNNFE-RIPESIIQL-SRLVVLNLNYC 452 (526)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-lp~~------------l~~~~l~-~lp~~l~~l-~~L~~L~L~~~ 452 (526)
... ..+..+..+..+. +|+.|++++|.+++ +|.. +++|.++ .+|. .+ ++|+.|++++|
T Consensus 388 --~l~-~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~~L~~L~L~~N 460 (562)
T 3a79_B 388 --GLK-NFFKVALMTKNMS-SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR---CLPPKVKVLDLHNN 460 (562)
T ss_dssp --CCC-BTTHHHHTTTTCT-TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS---SCCTTCSEEECCSS
T ss_pred --CcC-CcccchhhhcCCC-CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh---hhcCcCCEEECCCC
Confidence 211 1111111233444 89999999998887 6653 6667664 2332 33 69999999998
Q ss_pred ccCCcCCCc---cccccccccccccccccCC-----CCCCCCEEeccCCCCCCHHHHHHHHH
Q 038130 453 ERLQSLPKL---PFNLQGIFAHHCTALSSIS-----YKSSTQLFDLSDNFKLDRNAVRIIVE 506 (526)
Q Consensus 453 ~~l~~lp~~---~~~L~~L~l~~c~~L~~l~-----~~~~L~~L~l~~c~~l~~~~~~~~~~ 506 (526)
.++.+|.. +++|+.|+++++. ++.++ .+++|+.|++++||--......++.+
T Consensus 461 -~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~ 520 (562)
T 3a79_B 461 -RIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLS 520 (562)
T ss_dssp -CCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHH
T ss_pred -cCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHH
Confidence 66788763 5789999998864 33443 57899999999999887777766655
No 51
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=2.2e-18 Score=178.00 Aligned_cols=79 Identities=18% Similarity=0.248 Sum_probs=43.9
Q ss_pred cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130 230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS 309 (526)
Q Consensus 230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 309 (526)
..++++|++++| .+..++. +.++++|++|++++|. +..++.+..+++|++|++++|.++.+|. ++++++|++|+++
T Consensus 67 l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 67 LNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQ-IADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELS 142 (466)
T ss_dssp CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEE
T ss_pred hcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCc-cccChhhcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECC
Confidence 345666666664 3344444 5556666666666643 3333335556666666666666655544 5556666666665
Q ss_pred CCc
Q 038130 310 DCK 312 (526)
Q Consensus 310 ~~~ 312 (526)
+|.
T Consensus 143 ~n~ 145 (466)
T 1o6v_A 143 SNT 145 (466)
T ss_dssp EEE
T ss_pred CCc
Confidence 554
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=3.3e-19 Score=183.03 Aligned_cols=232 Identities=21% Similarity=0.271 Sum_probs=145.1
Q ss_pred CcceEEEeccCCCCCCCChhccccCC-------------CcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccc
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEF-------------LKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSI 297 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~-------------L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i 297 (526)
+.+++|++++|...+.+|..++++++ +++|++++|. ++.+|.+ .++|++|++++|.++.+|..+
T Consensus 34 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~~--~~~L~~L~l~~n~l~~lp~~~ 110 (454)
T 1jl5_A 34 KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPEL--PPHLESLVASCNSLTELPELP 110 (454)
T ss_dssp CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCSC--CTTCSEEECCSSCCSSCCCCC
T ss_pred cchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCCC--cCCCCEEEccCCcCCcccccc
Confidence 45666777766555566666665554 3777777764 5556653 357788888888888777543
Q ss_pred cCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCc
Q 038130 298 GCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNL 377 (526)
Q Consensus 298 ~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L 377 (526)
.+|++|++++|.+ ..+|.. .++|++|++++|.. ..+| .++++++|+ .|++++|.+ ..+|..+ .+|
T Consensus 111 ---~~L~~L~l~~n~l-~~l~~~---~~~L~~L~L~~n~l-~~lp-~~~~l~~L~-~L~l~~N~l-~~lp~~~----~~L 175 (454)
T 1jl5_A 111 ---QSLKSLLVDNNNL-KALSDL---PPLLEYLGVSNNQL-EKLP-ELQNSSFLK-IIDVDNNSL-KKLPDLP----PSL 175 (454)
T ss_dssp ---TTCCEEECCSSCC-SCCCSC---CTTCCEEECCSSCC-SSCC-CCTTCTTCC-EEECCSSCC-SCCCCCC----TTC
T ss_pred ---CCCcEEECCCCcc-CcccCC---CCCCCEEECcCCCC-CCCc-ccCCCCCCC-EEECCCCcC-cccCCCc----ccc
Confidence 6777777777653 334431 25788888887644 4477 478888888 888888877 4566533 578
Q ss_pred ceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc--------cCCCCcccccHHHhccCCCCEecc
Q 038130 378 YELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS--------LEKNNFERIPESIIQLSRLVVLNL 449 (526)
Q Consensus 378 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~--------l~~~~l~~lp~~l~~l~~L~~L~L 449 (526)
+.|+++.| ..... + .+.++. +|+.|++++|.++++|.. +++|.++.+|. +..+++|+.|++
T Consensus 176 ~~L~L~~n----~l~~l-~----~~~~l~-~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l 244 (454)
T 1jl5_A 176 EFIAAGNN----QLEEL-P----ELQNLP-FLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYA 244 (454)
T ss_dssp CEEECCSS----CCSSC-C----CCTTCT-TCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEEC
T ss_pred cEEECcCC----cCCcC-c----cccCCC-CCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEEC
Confidence 88888433 21111 1 133333 777778877777776553 66777777773 667777777777
Q ss_pred cCCccCCcCCCccccccccccccccccccCC-CCCCCCEEeccCC
Q 038130 450 NYCERLQSLPKLPFNLQGIFAHHCTALSSIS-YKSSTQLFDLSDN 493 (526)
Q Consensus 450 ~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~-~~~~L~~L~l~~c 493 (526)
++| .+..+|..+++|+.|+++++. +..++ .+++|+.|++++|
T Consensus 245 ~~N-~l~~l~~~~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 245 DNN-LLKTLPDLPPSLEALNVRDNY-LTDLPELPQSLTFLDVSEN 287 (454)
T ss_dssp CSS-CCSSCCSCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred CCC-cCCcccccccccCEEECCCCc-ccccCcccCcCCEEECcCC
Confidence 776 445566666666666666553 22232 2344444444444
No 53
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=3.3e-18 Score=176.77 Aligned_cols=246 Identities=21% Similarity=0.291 Sum_probs=128.8
Q ss_pred HhhcCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEE
Q 038130 227 VLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYL 306 (526)
Q Consensus 227 ~~~~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 306 (526)
+.....+++|++++| .+..++. +.++++|++|++++|. +..++.+..+++|++|++++|.+..+|. ++.+++|++|
T Consensus 86 ~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 161 (466)
T 1o6v_A 86 LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQL 161 (466)
T ss_dssp GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEE
T ss_pred hhccccCCEEECCCC-ccccChh-hcCCCCCCEEECCCCC-CCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEe
Confidence 334467888888875 4445555 7778888888888864 5556667788888888888887776653 5555555555
Q ss_pred ec---------------------cCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccc
Q 038130 307 YL---------------------SDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKRE 365 (526)
Q Consensus 307 ~L---------------------~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~ 365 (526)
++ ++|.+ ..++ .+..+++|++|++++|......| ++.+++|+ .|++++|.+ ..
T Consensus 162 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~-~L~l~~n~l-~~ 235 (466)
T 1o6v_A 162 SFGNQVTDLKPLANLTTLERLDISSNKV-SDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLD-ELSLNGNQL-KD 235 (466)
T ss_dssp EEEESCCCCGGGTTCTTCCEEECCSSCC-CCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCC-EEECCSSCC-CC
T ss_pred ecCCcccCchhhccCCCCCEEECcCCcC-CCCh-hhccCCCCCEEEecCCccccccc--ccccCCCC-EEECCCCCc-cc
Confidence 44 44432 1222 13444444444444433222211 33444444 444444444 22
Q ss_pred cChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCc----------cCCCCccccc
Q 038130 366 VPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS----------LEKNNFERIP 435 (526)
Q Consensus 366 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~----------l~~~~l~~lp 435 (526)
++ .+..+ ++|+.|+++.| ..... .+ +..+ ++|+.|++++|.++++|.. +++|.++.++
T Consensus 236 ~~-~l~~l-~~L~~L~l~~n----~l~~~---~~--~~~l-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~ 303 (466)
T 1o6v_A 236 IG-TLASL-TNLTDLDLANN----QISNL---AP--LSGL-TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS 303 (466)
T ss_dssp CG-GGGGC-TTCSEEECCSS----CCCCC---GG--GTTC-TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG
T ss_pred ch-hhhcC-CCCCEEECCCC----ccccc---hh--hhcC-CCCCEEECCCCccCccccccCCCccCeEEcCCCcccCch
Confidence 22 22222 45555555222 11110 00 2222 2666666666665554322 4555555555
Q ss_pred HHHhccCCCCEecccCCccCCcCC-Ccccccccccccccc--ccccCCCCCCCCEEeccCCCC
Q 038130 436 ESIIQLSRLVVLNLNYCERLQSLP-KLPFNLQGIFAHHCT--ALSSISYKSSTQLFDLSDNFK 495 (526)
Q Consensus 436 ~~l~~l~~L~~L~L~~~~~l~~lp-~~~~~L~~L~l~~c~--~L~~l~~~~~L~~L~l~~c~~ 495 (526)
. +..+++|+.|++++|...+..| ..+++|+.|++++|. .+..+..+++|+.|++++|+.
T Consensus 304 ~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 304 P-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp G-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred h-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCcc
Confidence 3 5566666666666664322222 124566666666652 112233566667777766643
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=5.6e-18 Score=179.47 Aligned_cols=227 Identities=24% Similarity=0.292 Sum_probs=182.8
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD 310 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 310 (526)
..++.|++++ +.+..+|..+. ++|++|++++|. ++.+|. .+++|++|+|++|.++.+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~-n~L~~lp~~l~--~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGE-SGLTTLPDCLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCS-SCCSCCCSCCC--TTCSEEEECSCC-CSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecC-CCcCccChhhC--CCCcEEEecCCC-CCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC
Confidence 3578999998 45678888665 899999999975 667777 67899999999999999997 779999999999
Q ss_pred CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCC
Q 038130 311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDK 390 (526)
Q Consensus 311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 390 (526)
|. +..+|. .+++|++|++++|. +..+|..+ ++|+ .|++++|.+ ..+|.. +++|+.|++..| .
T Consensus 111 N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~l---~~L~-~L~Ls~N~l-~~l~~~----~~~L~~L~L~~N----~ 172 (622)
T 3g06_A 111 NP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVLP---PGLQ-ELSVSDNQL-ASLPAL----PSELCKLWAYNN----Q 172 (622)
T ss_dssp CC-CCCCCC---CCTTCCEEECCSSC-CSCCCCCC---TTCC-EEECCSSCC-SCCCCC----CTTCCEEECCSS----C
T ss_pred Cc-CCCCCC---CCCCcCEEECCCCC-CCcCCCCC---CCCC-EEECcCCcC-CCcCCc----cCCCCEEECCCC----C
Confidence 87 455776 57899999999964 66687754 6788 999999999 667653 388999999543 2
Q ss_pred CCCCCCCcccCcccccCcccEEEccCCCCCCCCCc--------cCCCCcccccHHHhccCCCCEecccCCccCCcCCCcc
Q 038130 391 QMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS--------LEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLP 462 (526)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~--------l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~ 462 (526)
..... ..+++|+.|++++|.++++|.. +++|.++.+|. .+++|+.|++++| .+..+|..+
T Consensus 173 l~~l~--------~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N-~L~~lp~~l 240 (622)
T 3g06_A 173 LTSLP--------MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPA---LPSGLKELIVSGN-RLTSLPVLP 240 (622)
T ss_dssp CSCCC--------CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSS-CCSCCCCCC
T ss_pred CCCCc--------ccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCC---CCCCCCEEEccCC-ccCcCCCCC
Confidence 21111 2235999999999999998765 78889988884 4689999999998 677799888
Q ss_pred ccccccccccccccccCC-CCCCCCEEeccCCCCCCH
Q 038130 463 FNLQGIFAHHCTALSSIS-YKSSTQLFDLSDNFKLDR 498 (526)
Q Consensus 463 ~~L~~L~l~~c~~L~~l~-~~~~L~~L~l~~c~~l~~ 498 (526)
++|+.|+++++ .++.++ .+++|+.|++++| +++.
T Consensus 241 ~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N-~L~~ 275 (622)
T 3g06_A 241 SELKELMVSGN-RLTSLPMLPSGLLSLSVYRN-QLTR 275 (622)
T ss_dssp TTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCCS
T ss_pred CcCcEEECCCC-CCCcCCcccccCcEEeCCCC-CCCc
Confidence 99999999987 555665 5789999999999 4443
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=2.4e-18 Score=190.59 Aligned_cols=85 Identities=22% Similarity=0.208 Sum_probs=52.3
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC---CCCCCcccEEEecccCCccc--CccccCCCCCCE
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE---FSSSGKIEEIWLDGTAIEEL--PSSIGCLSRLLY 305 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~---~~~l~~L~~L~L~~~~i~~l--p~~i~~L~~L~~ 305 (526)
.++++|++++|......|..+.++++|++|++++|.....+|. +..+++|++|++++|.+..+ +..++++++|++
T Consensus 73 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152 (844)
T ss_dssp TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence 4566777776554444566666677777777776654433332 66667777777777766644 235667777777
Q ss_pred EeccCCccCc
Q 038130 306 LYLSDCKRLK 315 (526)
Q Consensus 306 L~L~~~~~~~ 315 (526)
|++++|.+.+
T Consensus 153 L~Ls~N~i~~ 162 (844)
T 3j0a_A 153 IDFSSNQIFL 162 (844)
T ss_dssp EEEESSCCCC
T ss_pred EECCCCcCCe
Confidence 7776665433
No 56
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.79 E-value=6.1e-18 Score=183.26 Aligned_cols=256 Identities=22% Similarity=0.199 Sum_probs=137.9
Q ss_pred cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCC-CCcCCC--CCC--CCcccEEEecccCCccc-CccccCCCCC
Q 038130 230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSK-LKRLPE--FSS--SGKIEEIWLDGTAIEEL-PSSIGCLSRL 303 (526)
Q Consensus 230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~-~~~lp~--~~~--l~~L~~L~L~~~~i~~l-p~~i~~L~~L 303 (526)
..+++.|++++|......+..+..+++|++|++++|.. ...++. +.. ...|+.|++++|.+..+ |..++.+++|
T Consensus 328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 407 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407 (680)
T ss_dssp CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence 35677777777655555555667777777777776542 122221 111 13455555555555533 3455666666
Q ss_pred CEEeccCCccCcccC-cCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccc--cccChhhhcccCCcceE
Q 038130 304 LYLYLSDCKRLKSLP-SSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAK--REVPSSIVGSNNNLYEL 380 (526)
Q Consensus 304 ~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~--~~~~~~l~~~~~~L~~L 380 (526)
++|++++|.+.+.+| ..+..+++|++|++++|......+..+..+++|+ .|++++|.+. +.+|..+..+ ++|+.|
T Consensus 408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~p~~~~~l-~~L~~L 485 (680)
T 1ziw_A 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ-RLMLRRVALKNVDSSPSPFQPL-RNLTIL 485 (680)
T ss_dssp CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCC-EEECTTSCCBCTTCSSCTTTTC-TTCCEE
T ss_pred CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccc-cchhccccccccccCCcccccC-CCCCEE
Confidence 666666665444444 3455566666666665543333344444555555 5555554432 2334444333 555555
Q ss_pred EcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCC----------------c----cCCCCcccccH-HHh
Q 038130 381 SLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPD----------------S----LEKNNFERIPE-SII 439 (526)
Q Consensus 381 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~----------------~----l~~~~l~~lp~-~l~ 439 (526)
+++.| ... ...+..+.++. +|+.|++++|.+++++. . +++|.++.+|. .+.
T Consensus 486 ~Ls~N----~l~---~i~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~ 557 (680)
T 1ziw_A 486 DLSNN----NIA---NINDDMLEGLE-KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557 (680)
T ss_dssp ECCSS----CCC---CCCTTTTTTCT-TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ECCCC----CCC---cCChhhhcccc-ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence 55222 110 00001111222 45555555554443210 0 34445555554 477
Q ss_pred ccCCCCEecccCCccCCcCCCc----cccccccccccccccccCC------CCCCCCEEeccCCCCCC
Q 038130 440 QLSRLVVLNLNYCERLQSLPKL----PFNLQGIFAHHCTALSSIS------YKSSTQLFDLSDNFKLD 497 (526)
Q Consensus 440 ~l~~L~~L~L~~~~~l~~lp~~----~~~L~~L~l~~c~~L~~l~------~~~~L~~L~l~~c~~l~ 497 (526)
++++|+.|++++| .+..+|.. +++|+.|+++++ .++.++ .+++|+.|++++||-..
T Consensus 558 ~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 558 DLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred cccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCccc
Confidence 8888999999887 55566642 468888888887 344443 36888999998876443
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.79 E-value=1.7e-18 Score=183.53 Aligned_cols=132 Identities=21% Similarity=0.167 Sum_probs=96.3
Q ss_pred cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCc-cccCCCCCCEEe
Q 038130 230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLY 307 (526)
Q Consensus 230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~ 307 (526)
..++++|++++|......+..+.++++|++|++++|......| .+.++.+|++|++++|.++.+|. .++++++|++|+
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 130 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEe
Confidence 4678888888865444445667888889999998876433333 37888888888888888887765 588888888888
Q ss_pred ccCCccCc-ccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccc----cceeecccccc
Q 038130 308 LSDCKRLK-SLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEAS----NSTLYAKGTAA 362 (526)
Q Consensus 308 L~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L----~~~L~l~~~~~ 362 (526)
+++|.+.. .+|..++++++|++|++++|......|..++.+++| + .+++++|.+
T Consensus 131 L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~-~L~l~~n~l 189 (570)
T 2z63_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL-SLDLSLNPM 189 (570)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCC-EEECTTCCC
T ss_pred cCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhh-hcccCCCCc
Confidence 88887554 468888888888888888876554445556666655 4 566666655
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=1.4e-19 Score=176.71 Aligned_cols=218 Identities=18% Similarity=0.242 Sum_probs=144.8
Q ss_pred ceEEEeccCCC-CCCCChhcc-------ccCCCcEEeeCCCCCCCcCCC-C--CCCCcccEEEecccCCcccCccccCC-
Q 038130 233 LVILNLSEYVS-LNSLPAEIL-------HLEFLKKLNLLGCSKLKRLPE-F--SSSGKIEEIWLDGTAIEELPSSIGCL- 300 (526)
Q Consensus 233 l~~L~l~~~~~-~~~lp~~~~-------~l~~L~~L~l~~~~~~~~lp~-~--~~l~~L~~L~L~~~~i~~lp~~i~~L- 300 (526)
++.|++++|.. ...+|..+. ++++|++|++++|.....+|. + ..+++|++|++++|.++.+|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 45556665433 124555444 688888999888775556664 3 78888889999988888778777776
Q ss_pred ----CCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCc--CCCcc--cCcccccceeecccccccc--ccChhh
Q 038130 301 ----SRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQR--LPDDF--GNLEASNSTLYAKGTAAKR--EVPSSI 370 (526)
Q Consensus 301 ----~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~--lp~~~--~~l~~L~~~L~l~~~~~~~--~~~~~l 370 (526)
++|++|++++|.+.+..|..++.+++|++|++++|...+. +|..+ +++++|+ .|++++|.+.+ .++..+
T Consensus 145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ-VLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCC-EEECTTSCCCCHHHHHHHH
T ss_pred HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCC-EEECCCCcCcchHHHHHHH
Confidence 8889999988886666667888888899999988765543 23333 7788888 88888888831 344444
Q ss_pred hcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEeccc
Q 038130 371 VGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLN 450 (526)
Q Consensus 371 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~ 450 (526)
+..+++|+.|+++.| .. .+..+.+.....++|+.|++++|.++.+| .++. ++|+.|+++
T Consensus 224 ~~~l~~L~~L~Ls~N----~l---~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip------------~~~~--~~L~~L~Ls 282 (312)
T 1wwl_A 224 AAARVQLQGLDLSHN----SL---RDAAGAPSCDWPSQLNSLNLSFTGLKQVP------------KGLP--AKLSVLDLS 282 (312)
T ss_dssp HHTTCCCSEEECTTS----CC---CSSCCCSCCCCCTTCCEEECTTSCCSSCC------------SSCC--SEEEEEECC
T ss_pred HhcCCCCCEEECCCC----cC---CcccchhhhhhcCCCCEEECCCCccChhh------------hhcc--CCceEEECC
Confidence 444488889988544 21 11111111122348889998888766554 2222 677777777
Q ss_pred CCccCCcCCC--ccccccccccccc
Q 038130 451 YCERLQSLPK--LPFNLQGIFAHHC 473 (526)
Q Consensus 451 ~~~~l~~lp~--~~~~L~~L~l~~c 473 (526)
+| .+..+|. .+++|+.|+++++
T Consensus 283 ~N-~l~~~p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 283 YN-RLDRNPSPDELPQVGNLSLKGN 306 (312)
T ss_dssp SS-CCCSCCCTTTSCEEEEEECTTC
T ss_pred CC-CCCCChhHhhCCCCCEEeccCC
Confidence 77 4444454 2456777776654
No 59
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.1e-17 Score=159.85 Aligned_cols=198 Identities=23% Similarity=0.264 Sum_probs=148.0
Q ss_pred cceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC--CCCCCCcccEEEecccCCcccCcc-ccCCCCCCEEec
Q 038130 232 TLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP--EFSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYL 308 (526)
Q Consensus 232 ~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L 308 (526)
..+.+++++ ..+..+|..+. +.|+.|++++|. +..++ .+..+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 17 ~~~~l~~~~-~~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSS-KKLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTT-SCCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccC-CCCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 456888887 56677887553 689999999976 45555 388899999999999999988876 488999999999
Q ss_pred cCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCC
Q 038130 309 SDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGG 388 (526)
Q Consensus 309 ~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 388 (526)
++|.+....+..+..+++|++|++++|......|..++++++|+ .|++++|.+ ..+|...+..+++|+.|+++.|
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n--- 167 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT-YLSLGYNEL-QSLPKGVFDKLTSLKELRLYNN--- 167 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSCC-CCCCTTTTTTCTTCCEEECCSS---
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCC-EEECCCCcC-CccCHhHccCCcccceeEecCC---
Confidence 99885554445568899999999999766555556688999999 999999998 6677664444499999999443
Q ss_pred CCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCcc
Q 038130 389 DKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCER 454 (526)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~ 454 (526)
..... ....+..+. +|+.|++++|.++++| +..+..+++|+.|++++|+.
T Consensus 168 -~l~~~---~~~~~~~l~-~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 168 -QLKRV---PEGAFDKLT-ELKTLKLDNNQLKRVP-----------EGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp -CCSCC---CTTTTTTCT-TCCEEECCSSCCSCCC-----------TTTTTTCTTCCEEECCSSCB
T ss_pred -cCcEe---ChhHhccCC-CcCEEECCCCcCCcCC-----------HHHhccccCCCEEEecCCCe
Confidence 21111 111133343 8999999998776654 33466788999999999863
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=1.8e-17 Score=170.03 Aligned_cols=235 Identities=23% Similarity=0.298 Sum_probs=130.9
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD 310 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 310 (526)
.++++|++++| .+..+|.. .++|++|++++|. +..+|.+..+.+|++|++++|.++.+|..+ .+|++|++++
T Consensus 111 ~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n~-l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~ 182 (454)
T 1jl5_A 111 QSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNNQ-LEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGN 182 (454)
T ss_dssp TTCCEEECCSS-CCSCCCSC---CTTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCS
T ss_pred CCCcEEECCCC-ccCcccCC---CCCCCEEECcCCC-CCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcC
Confidence 34555555553 23333321 1466677776654 344666666777777777777766666543 3677777777
Q ss_pred CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCC
Q 038130 311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDK 390 (526)
Q Consensus 311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 390 (526)
|.+. .+| .++.+++|++|++++|. +..+|... .+|+ .|++++|.+ ..+|. +..+ ++|+.|+++.| .
T Consensus 183 n~l~-~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~---~~L~-~L~l~~n~l-~~lp~-~~~l-~~L~~L~l~~N----~ 248 (454)
T 1jl5_A 183 NQLE-ELP-ELQNLPFLTAIYADNNS-LKKLPDLP---LSLE-SIVAGNNIL-EELPE-LQNL-PFLTTIYADNN----L 248 (454)
T ss_dssp SCCS-SCC-CCTTCTTCCEEECCSSC-CSSCCCCC---TTCC-EEECCSSCC-SSCCC-CTTC-TTCCEEECCSS----C
T ss_pred CcCC-cCc-cccCCCCCCEEECCCCc-CCcCCCCc---Cccc-EEECcCCcC-Ccccc-cCCC-CCCCEEECCCC----c
Confidence 6533 355 46777777777777754 33355433 3555 777777777 46663 5444 77888887443 2
Q ss_pred CCCCCCCcccCcccccCcccEEEccCCCCCCCCCc--------cCCCCcccccHHH----------------hcc-CCCC
Q 038130 391 QMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDS--------LEKNNFERIPESI----------------IQL-SRLV 445 (526)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~--------l~~~~l~~lp~~l----------------~~l-~~L~ 445 (526)
.... + ..+++|+.|++++|.++++|.. +++|.++.+|... ..+ ++|+
T Consensus 249 l~~l-~-------~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~ 320 (454)
T 1jl5_A 249 LKTL-P-------DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLE 320 (454)
T ss_dssp CSSC-C-------SCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCC
T ss_pred CCcc-c-------ccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCC
Confidence 1110 0 1113666666666666655443 4455555443110 012 3555
Q ss_pred EecccCCccCCcCCCccccccccccccccccccCC-CCCCCCEEeccCCCCCC
Q 038130 446 VLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSIS-YKSSTQLFDLSDNFKLD 497 (526)
Q Consensus 446 ~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~-~~~~L~~L~l~~c~~l~ 497 (526)
.|++++| .+..+|..+++|+.|++++| .++.++ .+++|++|++++|+-..
T Consensus 321 ~L~Ls~N-~l~~lp~~~~~L~~L~L~~N-~l~~lp~~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 321 ELNVSNN-KLIELPALPPRLERLIASFN-HLAEVPELPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp EEECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSS
T ss_pred EEECCCC-ccccccccCCcCCEEECCCC-ccccccchhhhccEEECCCCCCCc
Confidence 5555554 55555555566666666655 344454 35677777777775544
No 61
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.77 E-value=2.5e-22 Score=211.25 Aligned_cols=157 Identities=8% Similarity=0.038 Sum_probs=114.9
Q ss_pred cccccccCchHHHHHHHHHhCCCceEeeCCcCCCccchHHHHHHhhhceEEEEecCCccchhhcHHHHHHHHHHH-h---
Q 038130 20 FKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYIIFSESDASSSWCLDELLKIVECR-T--- 95 (526)
Q Consensus 20 ~~~~d~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~I~~kc~GlPLa~~~~g~~l~~~~~~~~w~~i~~~~-~--- 95 (526)
++.+|+|++|..++|. .. .++++ ++++++|+++|+|+|||++++|+.++.+ .+ +|.+.+... .
T Consensus 293 L~~~ea~~Lf~~~a~~-----~~---~~~~~---~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~l~~~~ 359 (549)
T 2a5y_B 293 LEIDECYDFLEAYGMP-----MP---VGEKE---EDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNKLESRG 359 (549)
T ss_dssp CCHHHHHHHHHHTSCC-----CC-----CHH---HHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhcC-----CC---CchhH---HHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHHHhhccc
Confidence 5678899999998654 11 01244 8899999999999999999888888766 32 343444433 1
Q ss_pred -hCCCeEEEEEeeccchhhhhcccc-----------HHHHHHHHHhhchhhhhcCCceEEeehhh--ccccchH--HHHH
Q 038130 96 -NYGQIVVAVCYRVEPSHVRKQIGS-----------FEDSFSKLEERFPDKMQTGKKHICLDVAY--FLKEERS--DMVL 159 (526)
Q Consensus 96 -~~~~~il~~sY~~Lp~~lk~~cf~-----------y~~~Fp~d~~i~~~~~~~~~~Li~lwiAe--gf~~~~~--~~~~ 159 (526)
.....++.+||++||.++| +||. ||++||+|+.| + |.+|+|+ ||+.... ...+
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk-~~f~~Ls~~er~l~~~ls~fp~~~~i------~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQ-RCVEVLSDEDRSALAFAVVMPPGVDI------P----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHH-HHHHTSCHHHHHHTTGGGSSCTTCCE------E----HHHHHHHSCC-------CCCTH
T ss_pred HHHHHHHHhcccccccHHHH-HHHhccchhhhhHhhheeeeCCCCee------e----eeeeeeeccceeccCCCCCCHH
Confidence 1223366669999999999 8999 99999999999 4 8999999 9986543 2233
Q ss_pred HHHhhCCCCcccchHHHhhccceeeecC---CeEEechhHHHHHHHHHHhhc
Q 038130 160 SFLDACGFFAGIGLPVLVNRCLITVSHS---NTITMHDSLGDMEREIVQKES 208 (526)
Q Consensus 160 ~~~~~~~~~~~~~~~~Li~~sl~~~~~~---~~~~mhdl~~dla~~i~~~e~ 208 (526)
++++ + +++|+++||++.... ..|+|||+||++|++++.+++
T Consensus 429 ~~~~-~-------l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 429 EVAD-R-------LKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHH-H-------HHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHH-H-------HHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 4443 4 999999999997643 479999999999998887664
No 62
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=9.2e-18 Score=160.49 Aligned_cols=147 Identities=19% Similarity=0.229 Sum_probs=80.4
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCcc-ccCCCCCCEEecc
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYLS 309 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~ 309 (526)
..++.|+++++ .+..++. +..+++|++|++++|. +..++.+..+++|++|++++|.++.+|.. ++.+++|++|+++
T Consensus 41 ~~L~~L~l~~~-~i~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 41 NSIDQIIANNS-DIKSVQG-IQYLPNVRYLALGGNK-LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TTCCEEECTTS-CCCCCTT-GGGCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cceeeeeeCCC-Ccccccc-cccCCCCcEEECCCCC-CCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 45566666653 3334443 5556666666666654 33445556666666666666666655443 4566666666666
Q ss_pred CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEc
Q 038130 310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSL 382 (526)
Q Consensus 310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 382 (526)
+|.+.+..|..+..+++|++|++++|......+..++++++|+ .|++++|.+ ..++......+++|+.|++
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l-~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT-ELDLSYNQL-QSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSCC-CCCCTTTTTTCTTCCEEEC
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCC-EEECCCCCc-CccCHHHhcCCccCCEEEC
Confidence 6654443334455666666666666543333333355666666 666666666 3344333222255666665
No 63
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=2.5e-17 Score=176.70 Aligned_cols=131 Identities=23% Similarity=0.269 Sum_probs=108.0
Q ss_pred CcceEEEeccCCCCCCCC-hhccccCCCcEEeeCCCCCCCcCC-C-CCCCCcccEEEecccCCcccCc-cccCCCCCCEE
Q 038130 231 NTLVILNLSEYVSLNSLP-AEILHLEFLKKLNLLGCSKLKRLP-E-FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYL 306 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp-~-~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L 306 (526)
.++++|++++|. +..+| ..|.++++|++|+|++|. +..+| . |.++++|++|+|++|.++.+|. .|++|++|++|
T Consensus 52 ~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 468999999964 55555 578999999999999986 55554 3 8899999999999999998886 48999999999
Q ss_pred eccCCccCcccCcCCCCCCCCcEEeecCCCCCC-cCCCcccCcccccceeecccccccc
Q 038130 307 YLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQ-RLPDDFGNLEASNSTLYAKGTAAKR 364 (526)
Q Consensus 307 ~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~~L~l~~~~~~~ 364 (526)
++++|.+.+..+..++++++|++|++++|.... .+|..++.++.|+ .|++++|.+.+
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~-~L~L~~N~l~~ 187 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE-HLDLSSNKIQS 187 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC-EEECCSSCCCE
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhh-hhcccCccccc
Confidence 999998655444568999999999999976543 4677888999999 99999987743
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=1.3e-17 Score=159.72 Aligned_cols=204 Identities=19% Similarity=0.142 Sum_probs=137.9
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC--CCCCCCcccEEEecccCCcccC-ccccCCCCCCEEe
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP--EFSSSGKIEEIWLDGTAIEELP-SSIGCLSRLLYLY 307 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~ 307 (526)
.++++|++++|......+..+.++++|++|++++|. +..++ .+..+++|++|++++|.++.++ ..+.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 467888888854433333467788888888888875 44443 3778888888888888888665 5688888888888
Q ss_pred ccCCccCcccCcCCCCCCCCcEEeecCCCCCC-cCCCcccCcccccceeeccccccccccChhhhcccCCcc----eEEc
Q 038130 308 LSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQ-RLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLY----ELSL 382 (526)
Q Consensus 308 L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~----~L~l 382 (526)
+++|.+....+..+..+++|++|++++|.... .+|..++++++|+ .|++++|.+.+..+..+..+ ++|+ .|++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l-~~L~~l~l~L~l 184 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE-HLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDL 184 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC-EEECCSSCCCEECGGGGHHH-HTCTTCCEEEEC
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCC-EEECCCCCCCcCCHHHhhhh-hhccccceeeec
Confidence 88887555445467888888888888866544 3677888888888 88888888843333444443 6666 6777
Q ss_pred ccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCc
Q 038130 383 DRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQS 457 (526)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~ 457 (526)
+.| .... ......... +|+.|++++|.++++| +..+..+++|+.|++++|+....
T Consensus 185 s~n----~l~~----~~~~~~~~~-~L~~L~L~~n~l~~~~-----------~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 185 SLN----PMNF----IQPGAFKEI-RLKELALDTNQLKSVP-----------DGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CSS----CCCE----ECTTSSCSC-CEEEEECCSSCCSCCC-----------TTTTTTCCSCCEEECCSSCBCCC
T ss_pred CCC----cccc----cCccccCCC-cccEEECCCCceeecC-----------HhHhcccccccEEEccCCccccc
Confidence 443 1111 111111222 7888888888766544 23456788888898888864433
No 65
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=1.3e-17 Score=159.51 Aligned_cols=198 Identities=18% Similarity=0.155 Sum_probs=154.1
Q ss_pred ccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEE
Q 038130 251 ILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLL 330 (526)
Q Consensus 251 ~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 330 (526)
...+++|+.|++++|. +..++.+..+++|++|++++|.+..++ .++.+++|++|++++|.+.+..|..+..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~-i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 37 QNELNSIDQIIANNSD-IKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHHTTCCEEECTTSC-CCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccccceeeeeeCCCC-cccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 5668999999999965 677888999999999999999999875 78999999999999998666555667899999999
Q ss_pred eecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCccc
Q 038130 331 NLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLT 410 (526)
Q Consensus 331 ~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 410 (526)
++++|......+..++++++|+ .|++++|.+ ..++...+..+++|+.|+++.| ... ......+..+ ++|+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n----~l~---~~~~~~~~~l-~~L~ 184 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLT-YLNLAHNQL-QSLPKGVFDKLTNLTELDLSYN----QLQ---SLPEGVFDKL-TQLK 184 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCC-EEECCSSCC-CCCCTTTTTTCTTCCEEECCSS----CCC---CCCTTTTTTC-TTCC
T ss_pred ECCCCcCCccCHHHhccCCCCC-EEECCCCcc-CccCHHHhccCccCCEEECCCC----CcC---ccCHHHhcCC-ccCC
Confidence 9999876655555689999999 999999999 5666655444499999999544 221 1111112344 4999
Q ss_pred EEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCccccccccccccccc
Q 038130 411 SLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTA 475 (526)
Q Consensus 411 ~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~ 475 (526)
.|++++|.++++| |..+..+++|+.|++++|+.....| +|+.|+++.+.-
T Consensus 185 ~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~l~~N~~~~~~~----~l~~l~~~~n~~ 234 (272)
T 3rfs_A 185 DLRLYQNQLKSVP-----------DGVFDRLTSLQYIWLHDNPWDCTCP----GIRYLSEWINKH 234 (272)
T ss_dssp EEECCSSCCSCCC-----------TTTTTTCTTCCEEECCSSCBCCCTT----TTHHHHHHHHHT
T ss_pred EEECCCCcCCccC-----------HHHHhCCcCCCEEEccCCCccccCc----HHHHHHHHHHhC
Confidence 9999999877654 4457789999999999997665544 667776665443
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=7.2e-20 Score=178.87 Aligned_cols=240 Identities=19% Similarity=0.165 Sum_probs=175.4
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCC-CcCCC-CC-------CCCcccEEEecccCCc-ccCccc--c
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKL-KRLPE-FS-------SSGKIEEIWLDGTAIE-ELPSSI--G 298 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~-~~lp~-~~-------~l~~L~~L~L~~~~i~-~lp~~i--~ 298 (526)
..++.|++++|.. .+|..+... |++|++++|... ..+|. +. .+.+|++|++++|.++ .+|..+ +
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 3467777777655 778766654 889999886542 23443 32 6889999999999998 788876 8
Q ss_pred CCCCCCEEeccCCccCcccCcCCCCC-----CCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccc--cChhh-
Q 038130 299 CLSRLLYLYLSDCKRLKSLPSSLSQL-----KSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKRE--VPSSI- 370 (526)
Q Consensus 299 ~L~~L~~L~L~~~~~~~~lp~~i~~l-----~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~--~~~~l- 370 (526)
.+++|++|++++|.+.+. |..+..+ ++|++|++++|...+..|..++++++|+ .|++++|.+.+. ++..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS-TLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC-EEECCSCTTCHHHHHHHHSC
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC-EEECCCCCcCcchHHHHHHH
Confidence 999999999999986554 7777766 8999999999877666668899999999 999999987554 33344
Q ss_pred -hcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCccccc-HHHhccCCCCEec
Q 038130 371 -VGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIP-ESIIQLSRLVVLN 448 (526)
Q Consensus 371 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp-~~l~~l~~L~~L~ 448 (526)
..+ ++|++|+++.| ... ..+.....+....++|+.|++++|.+++.+ | ..+..+++|+.|+
T Consensus 197 ~~~l-~~L~~L~L~~N----~l~-~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------~~~~~~~l~~L~~L~ 259 (312)
T 1wwl_A 197 PLKF-PTLQVLALRNA----GME-TPSGVCSALAAARVQLQGLDLSHNSLRDAA-----------GAPSCDWPSQLNSLN 259 (312)
T ss_dssp TTSC-TTCCEEECTTS----CCC-CHHHHHHHHHHTTCCCSEEECTTSCCCSSC-----------CCSCCCCCTTCCEEE
T ss_pred hccC-CCCCEEECCCC----cCc-chHHHHHHHHhcCCCCCEEECCCCcCCccc-----------chhhhhhcCCCCEEE
Confidence 444 99999999544 211 000111111112249999999999877632 1 2344578999999
Q ss_pred ccCCccCCcCCCc-ccccccccccccccccc---CCCCCCCCEEeccCCCC
Q 038130 449 LNYCERLQSLPKL-PFNLQGIFAHHCTALSS---ISYKSSTQLFDLSDNFK 495 (526)
Q Consensus 449 L~~~~~l~~lp~~-~~~L~~L~l~~c~~L~~---l~~~~~L~~L~l~~c~~ 495 (526)
+++|. ++.+|.. +++|+.|+++++. ++. +..+++|++|++++|+-
T Consensus 260 Ls~N~-l~~ip~~~~~~L~~L~Ls~N~-l~~~p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 260 LSFTG-LKQVPKGLPAKLSVLDLSYNR-LDRNPSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CTTSC-CSSCCSSCCSEEEEEECCSSC-CCSCCCTTTSCEEEEEECTTCTT
T ss_pred CCCCc-cChhhhhccCCceEEECCCCC-CCCChhHhhCCCCCEEeccCCCC
Confidence 99994 5688864 4699999999863 333 44689999999999964
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=1.7e-17 Score=159.99 Aligned_cols=196 Identities=22% Similarity=0.236 Sum_probs=142.2
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS 309 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 309 (526)
..++.+++++ +.+..+|..+. +.+++|++++|......+ .+..+.+|++|++++|.++.+|.. +.+++|++|+++
T Consensus 10 ~~l~~l~~~~-~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 10 ASHLEVNCDK-RNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp TTCCEEECTT-SCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred CCccEEECCC-CCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 4677888887 56677776553 688899998876433333 378888899999999988887764 788899999999
Q ss_pred CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCC
Q 038130 310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGD 389 (526)
Q Consensus 310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 389 (526)
+|. +..+|..+..+++|++|++++|......|..+.++++|+ .|++++|.+ ..+|...+..+++|+.|+++.|
T Consensus 86 ~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~-~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N---- 158 (290)
T 1p9a_G 86 HNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ-ELYLKGNEL-KTLPPGLLTPTPKLEKLSLANN---- 158 (290)
T ss_dssp SSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCC-EEECTTSCC-CCCCTTTTTTCTTCCEEECTTS----
T ss_pred CCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCC-EEECCCCCC-CccChhhcccccCCCEEECCCC----
Confidence 886 457888888889999999988655444446688888888 999999988 5666665554488999998544
Q ss_pred CCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCc
Q 038130 390 KQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCE 453 (526)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~ 453 (526)
..... ....+..+. +|+.|++++|.++ .+|.++..+++|+.|++++|+
T Consensus 159 ~l~~l---~~~~~~~l~-~L~~L~L~~N~l~------------~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 159 NLTEL---PAGLLNGLE-NLDTLLLQENSLY------------TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCSCC---CTTTTTTCT-TCCEEECCSSCCC------------CCCTTTTTTCCCSEEECCSCC
T ss_pred cCCcc---CHHHhcCcC-CCCEEECCCCcCC------------ccChhhcccccCCeEEeCCCC
Confidence 21111 111122333 8899998888654 445566667788888888886
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=2.5e-17 Score=157.83 Aligned_cols=216 Identities=21% Similarity=0.139 Sum_probs=145.2
Q ss_pred CCCCCCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCc-cccCCCCCCEEeccCCccCcccCc
Q 038130 242 VSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLSDCKRLKSLPS 319 (526)
Q Consensus 242 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~ 319 (526)
..+..+|..+. ++|++|++++|......+ .+..+++|++|++++|.++.++. .++++++|++|++++|.+....|.
T Consensus 17 ~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 17 LNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp SCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh
Confidence 44566776553 579999999976433333 48888999999999999987765 688899999999999887666667
Q ss_pred CCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecccccccc-ccChhhhcccCCcceEEcccCCCCCCCCCCCCCc
Q 038130 320 SLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKR-EVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPI 398 (526)
Q Consensus 320 ~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 398 (526)
.+..+++|++|++++|......+..++++++|+ .|++++|.+.+ .+|..+..+ ++|+.|+++.| ..... .
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~l~~~~~~l-~~L~~L~Ls~N----~l~~~---~ 165 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLK-ELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSN----KIQSI---Y 165 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC-EEECCSSCCCCCCCCGGGGGC-TTCCEEECCSS----CCCEE---C
T ss_pred hhcCCccccEEECCCCCccccCchhcccCCCCC-EEECcCCccceecCchhhccC-CCCCEEECCCC----CCCcC---C
Confidence 788999999999998765554455688888999 99999998843 257777666 88888888443 21111 1
Q ss_pred ccCcccccCccc----EEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCcccccccccccccc
Q 038130 399 TLPLDGLHTTLT----SLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCT 474 (526)
Q Consensus 399 ~~~~~~~~~~L~----~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~ 474 (526)
...+..+. +|+ .|++++|.+++ +|.......+|+.|++++|. ++.+|.
T Consensus 166 ~~~~~~l~-~L~~l~l~L~ls~n~l~~------------~~~~~~~~~~L~~L~L~~n~-l~~~~~-------------- 217 (276)
T 2z62_A 166 CTDLRVLH-QMPLLNLSLDLSLNPMNF------------IQPGAFKEIRLKELALDTNQ-LKSVPD-------------- 217 (276)
T ss_dssp GGGGHHHH-TCTTCCEEEECCSSCCCE------------ECTTSSCSCCEEEEECCSSC-CSCCCT--------------
T ss_pred HHHhhhhh-hccccceeeecCCCcccc------------cCccccCCCcccEEECCCCc-eeecCH--------------
Confidence 11121222 444 67777765544 33333334477777887773 444432
Q ss_pred ccccCCCCCCCCEEeccCCCCCCH
Q 038130 475 ALSSISYKSSTQLFDLSDNFKLDR 498 (526)
Q Consensus 475 ~L~~l~~~~~L~~L~l~~c~~l~~ 498 (526)
..+..+++|+.|++++||--..
T Consensus 218 --~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 218 --GIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp --TTTTTCCSCCEEECCSSCBCCC
T ss_pred --hHhcccccccEEEccCCccccc
Confidence 1123467788888887764433
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=3.8e-18 Score=166.14 Aligned_cols=202 Identities=21% Similarity=0.253 Sum_probs=156.8
Q ss_pred cCcceEEEeccCCCCCCC---ChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCc--cccCCCCC
Q 038130 230 VNTLVILNLSEYVSLNSL---PAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPS--SIGCLSRL 303 (526)
Q Consensus 230 ~~~l~~L~l~~~~~~~~l---p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~--~i~~L~~L 303 (526)
..++++|++++|. +..+ +..+..+++|++|++++|. +..+|. +..+++|++|++++|.++.++. .+..+++|
T Consensus 51 l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 128 (306)
T 2z66_A 51 LTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128 (306)
T ss_dssp CTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTC
T ss_pred cccCCEEECCCCc-cCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCC
Confidence 4678999999864 3333 5667779999999999976 445554 8889999999999999998774 78999999
Q ss_pred CEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCC-cCCCcccCcccccceeeccccccccccChhhhcccCCcceEEc
Q 038130 304 LYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQ-RLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSL 382 (526)
Q Consensus 304 ~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 382 (526)
++|++++|.+.+..|..+..+++|++|++++|...+ .+|..+..+++|+ .|++++|.+.+..|..+..+ ++|+.|++
T Consensus 129 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L 206 (306)
T 2z66_A 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT-FLDLSQCQLEQLSPTAFNSL-SSLQVLNM 206 (306)
T ss_dssp CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC-EEECTTSCCCEECTTTTTTC-TTCCEEEC
T ss_pred CEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC-EEECCCCCcCCcCHHHhcCC-CCCCEEEC
Confidence 999999998777778888999999999999976554 4788899999999 99999999955446666666 99999999
Q ss_pred ccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhcc-CCCCEecccCCcc
Q 038130 383 DRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQL-SRLVVLNLNYCER 454 (526)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l-~~L~~L~L~~~~~ 454 (526)
+.| ..... ....+..+. +|+.|++++|.+++.+ |..+..+ ++|+.|++++|+.
T Consensus 207 ~~N----~l~~~---~~~~~~~l~-~L~~L~L~~N~l~~~~-----------~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 207 SHN----NFFSL---DTFPYKCLN-SLQVLDYSLNHIMTSK-----------KQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TTS----CCSBC---CSGGGTTCT-TCCEEECTTSCCCBCS-----------SSSCCCCCTTCCEEECTTCCE
T ss_pred CCC----ccCcc---ChhhccCcc-cCCEeECCCCCCcccC-----------HHHHHhhhccCCEEEccCCCe
Confidence 544 22111 111233444 9999999999877632 4455566 4899999999964
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=1.6e-16 Score=151.59 Aligned_cols=199 Identities=23% Similarity=0.295 Sum_probs=145.2
Q ss_pred CCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCc-cccCCCCCCEEeccCCccCcccCcC-CCCCCCCcEEe
Q 038130 255 EFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLSDCKRLKSLPSS-LSQLKSLKLLN 331 (526)
Q Consensus 255 ~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~ 331 (526)
...++++++++ .++.+|. +. .+++.|++++|.++.+|. .++++++|++|++++|.+. .+|.. +..+++|++|+
T Consensus 16 ~~~~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSK-KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCC-CCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence 35789999985 4667775 43 678999999999998875 6899999999999998755 45544 57899999999
Q ss_pred ecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccE
Q 038130 332 LHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTS 411 (526)
Q Consensus 332 l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 411 (526)
+++|......+..+.++++|+ .|++++|.+ ..++...+..+++|+.|+++.| ..... ....+..+ ++|+.
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n----~l~~~---~~~~~~~l-~~L~~ 161 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLA-ELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYN----ELQSL---PKGVFDKL-TSLKE 161 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCC-EEECCSSCC-CCCCTTTTTTCTTCCEEECCSS----CCCCC---CTTTTTTC-TTCCE
T ss_pred CCCCcCCcCCHhHcccccCCC-EEECCCCcc-CeeCHHHhCcCcCCCEEECCCC----cCCcc---CHhHccCC-cccce
Confidence 999765544445678899999 999999999 5555554444499999999544 21111 11113334 49999
Q ss_pred EEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCccccccccccccccccccCCCCCCCCEEecc
Q 038130 412 LYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQLFDLS 491 (526)
Q Consensus 412 L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~~~~~L~~L~l~ 491 (526)
|++++|.++++| +..+..+++|+.|++++| .+..+|. ..+..+++|+.|+++
T Consensus 162 L~L~~n~l~~~~-----------~~~~~~l~~L~~L~L~~N-~l~~~~~----------------~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 162 LRLYNNQLKRVP-----------EGAFDKLTELKTLKLDNN-QLKRVPE----------------GAFDSLEKLKMLQLQ 213 (270)
T ss_dssp EECCSSCCSCCC-----------TTTTTTCTTCCEEECCSS-CCSCCCT----------------TTTTTCTTCCEEECC
T ss_pred eEecCCcCcEeC-----------hhHhccCCCcCEEECCCC-cCCcCCH----------------HHhccccCCCEEEec
Confidence 999998776654 345678899999999998 4444442 123346788899999
Q ss_pred CCCC
Q 038130 492 DNFK 495 (526)
Q Consensus 492 ~c~~ 495 (526)
+||-
T Consensus 214 ~N~~ 217 (270)
T 2o6q_A 214 ENPW 217 (270)
T ss_dssp SSCB
T ss_pred CCCe
Confidence 8873
No 71
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=3.1e-18 Score=170.29 Aligned_cols=215 Identities=16% Similarity=0.113 Sum_probs=161.0
Q ss_pred hcCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCcccCc--cccCCCCCC
Q 038130 229 IVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELPS--SIGCLSRLL 304 (526)
Q Consensus 229 ~~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~lp~--~i~~L~~L~ 304 (526)
...++++|++++|......|..+.++++|++|++++|. +..+|. +..+++|++|++++|.++.+|. .++.+++|+
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence 34689999999975544456678999999999999975 556664 7899999999999999999987 789999999
Q ss_pred EEeccCCccCccc-CcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcc
Q 038130 305 YLYLSDCKRLKSL-PSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLD 383 (526)
Q Consensus 305 ~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~ 383 (526)
+|++++|...+.+ |..+..+++|++|++++|......|..++++++|+ .|++++|.+ ..+|..+...+++|+.|+++
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS-HLILHMKQH-ILLLEIFVDVTSSVECLELR 230 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE-EEEEECSCS-TTHHHHHHHHTTTEEEEEEE
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCC-eecCCCCcc-ccchhhhhhhcccccEEECC
Confidence 9999998544444 56789999999999999887777788999999999 999999998 77887776656999999996
Q ss_pred cCCCCCCCCCCCCCc------------------------ccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHH-H
Q 038130 384 RSWGGDKQMGLSSPI------------------------TLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPES-I 438 (526)
Q Consensus 384 ~~~~~~~~~~~~~~~------------------------~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~-l 438 (526)
.|............. +..+..+ ++|+.|++++|. ++.+|.+ +
T Consensus 231 ~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l-~~L~~L~Ls~N~------------l~~i~~~~~ 297 (353)
T 2z80_A 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI-SGLLELEFSRNQ------------LKSVPDGIF 297 (353)
T ss_dssp SCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC-TTCCEEECCSSC------------CCCCCTTTT
T ss_pred CCccccccccccccccccchhhccccccccccCcchhhhHHHHhcc-cCCCEEECCCCC------------CCccCHHHH
Confidence 552211100000000 0001112 256666666654 5556655 4
Q ss_pred hccCCCCEecccCCccCCcCC
Q 038130 439 IQLSRLVVLNLNYCERLQSLP 459 (526)
Q Consensus 439 ~~l~~L~~L~L~~~~~l~~lp 459 (526)
..+++|+.|++++|+.....|
T Consensus 298 ~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 298 DRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTCTTCCEEECCSSCBCCCHH
T ss_pred hcCCCCCEEEeeCCCccCcCC
Confidence 789999999999997555433
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.74 E-value=1.6e-16 Score=153.08 Aligned_cols=209 Identities=21% Similarity=0.134 Sum_probs=155.2
Q ss_pred ccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCccc-CccccCCCCCCEEeccCCccCcccCcCCCCCCCCc
Q 038130 251 ILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLK 328 (526)
Q Consensus 251 ~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 328 (526)
+.+++++++++++++ .++.+|. +. .++++|++++|.++.+ |..+..+++|++|++++|.+ ..+|.. +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECC-SCCTTCC
T ss_pred ccccCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCC-CCCCcCC
Confidence 567899999999985 4667775 43 6889999999999966 46799999999999999874 445553 7899999
Q ss_pred EEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCc
Q 038130 329 LLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTT 408 (526)
Q Consensus 329 ~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (526)
+|++++| .+..+|..+..+++|+ .|++++|.+ ..++...+..+++|+.|+++.| ..... ....+..+ ++
T Consensus 81 ~L~Ls~N-~l~~l~~~~~~l~~L~-~L~l~~N~l-~~l~~~~~~~l~~L~~L~L~~N----~l~~~---~~~~~~~l-~~ 149 (290)
T 1p9a_G 81 TLDLSHN-QLQSLPLLGQTLPALT-VLDVSFNRL-TSLPLGALRGLGELQELYLKGN----ELKTL---PPGLLTPT-PK 149 (290)
T ss_dssp EEECCSS-CCSSCCCCTTTCTTCC-EEECCSSCC-CCCCSSTTTTCTTCCEEECTTS----CCCCC---CTTTTTTC-TT
T ss_pred EEECCCC-cCCcCchhhccCCCCC-EEECCCCcC-cccCHHHHcCCCCCCEEECCCC----CCCcc---Chhhcccc-cC
Confidence 9999996 5668898899999999 999999999 5666543344499999999544 22111 11112333 49
Q ss_pred ccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCccccccccccccccccccCCCCCCCCEE
Q 038130 409 LTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQLF 488 (526)
Q Consensus 409 L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~~~~~L~~L 488 (526)
|+.|++++|+++++| +..+..+++|+.|++++| .+..+|.. +...++|+.|
T Consensus 150 L~~L~L~~N~l~~l~-----------~~~~~~l~~L~~L~L~~N-~l~~ip~~-----------------~~~~~~L~~l 200 (290)
T 1p9a_G 150 LEKLSLANNNLTELP-----------AGLLNGLENLDTLLLQEN-SLYTIPKG-----------------FFGSHLLPFA 200 (290)
T ss_dssp CCEEECTTSCCSCCC-----------TTTTTTCTTCCEEECCSS-CCCCCCTT-----------------TTTTCCCSEE
T ss_pred CCEEECCCCcCCccC-----------HHHhcCcCCCCEEECCCC-cCCccChh-----------------hcccccCCeE
Confidence 999999999776654 334577899999999998 45555532 2234578899
Q ss_pred eccCCCCCCHHHHHHH
Q 038130 489 DLSDNFKLDRNAVRII 504 (526)
Q Consensus 489 ~l~~c~~l~~~~~~~~ 504 (526)
++++||-........+
T Consensus 201 ~L~~Np~~C~c~~~~l 216 (290)
T 1p9a_G 201 FLHGNPWLCNCEILYF 216 (290)
T ss_dssp ECCSCCBCCSGGGHHH
T ss_pred EeCCCCccCcCccHHH
Confidence 9999986654433333
No 73
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=99.73 E-value=4.9e-18 Score=149.18 Aligned_cols=124 Identities=40% Similarity=0.666 Sum_probs=111.5
Q ss_pred CCCCCCCCcEEEecccccccCchHHHHHHHHHhCCCceEeeC-CcCCCccchHHHHHHhhhceEE-EEecCCccchhhcH
Q 038130 7 LHFQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGN-DLKRGDEISQSLGDAVEVSSIY-IIFSESDASSSWCL 84 (526)
Q Consensus 7 ~~~~~~~~~~f~s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~-~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l~~~~~~ 84 (526)
++....+|||||||+|+|..+.|..+++.+|.++|+.+|.|+ ++++|+.|+..|.+...++-.+ +++...++.+.|+.
T Consensus 29 ~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl 108 (204)
T 3ozi_A 29 GSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCL 108 (204)
T ss_dssp -----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHH
T ss_pred CCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHH
Confidence 346788999999999999988999999999999999999997 8999999999999999999999 77789999999999
Q ss_pred HHHHHHHHHHhh-CCCeEEEEEeeccchhhhhccccHHHHHHHHHhh
Q 038130 85 DELLKIVECRTN-YGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEER 130 (526)
Q Consensus 85 ~~w~~i~~~~~~-~~~~il~~sY~~Lp~~lk~~cf~y~~~Fp~d~~i 130 (526)
+|+..|+++... ..+.|+|+.|+.-|+++++|-..|...|-+...-
T Consensus 109 ~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~ 155 (204)
T 3ozi_A 109 MELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANK 155 (204)
T ss_dssp HHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHh
Confidence 999999999865 4678999999999999999999999999887654
No 74
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=5.2e-17 Score=161.16 Aligned_cols=233 Identities=18% Similarity=0.153 Sum_probs=139.6
Q ss_pred eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCc-ccCc-cccCCCCCCE-Eec
Q 038130 234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIE-ELPS-SIGCLSRLLY-LYL 308 (526)
Q Consensus 234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~-~lp~-~i~~L~~L~~-L~L 308 (526)
++++.++ +.++.+|..+ .+++++|+|++|. ++.+|. |.++++|++|+|++|.+. .+|. .|.++++|+. +.+
T Consensus 12 ~~v~C~~-~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQE-SKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEES-TTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecC-CCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 3455554 4566677655 3567777777754 555553 667777777777777764 4543 3566766664 334
Q ss_pred cCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecccc-ccccccChh-hhcccCCcceEEcccCC
Q 038130 309 SDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGT-AAKREVPSS-IVGSNNNLYELSLDRSW 386 (526)
Q Consensus 309 ~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~-~~~~~~~~~-l~~~~~~L~~L~l~~~~ 386 (526)
.+|.+....|..+..+++|++|++++|......+..+.....+. .+++.++ .+ ..++.. +......++.|+++.|
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~-~l~l~~~~~i-~~l~~~~f~~~~~~l~~L~L~~N- 164 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV-LLDIQDNINI-HTIERNSFVGLSFESVILWLNKN- 164 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCE-EEEEESCTTC-CEECTTSSTTSBSSCEEEECCSS-
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhh-hhhhcccccc-ccccccchhhcchhhhhhccccc-
Confidence 44443333355566777777777776543333333344444555 6666543 44 445443 2333245666776433
Q ss_pred CCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccH-HHhccCCCCEecccCCccCCcCCC-cccc
Q 038130 387 GGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPE-SIIQLSRLVVLNLNYCERLQSLPK-LPFN 464 (526)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~-~~~~ 464 (526)
.... ++....... +|+.|++.++ |.++.+|. .+..+++|+.|++++| .+..+|. .+.+
T Consensus 165 ---~i~~----i~~~~f~~~-~L~~l~l~~~-----------n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~ 224 (350)
T 4ay9_X 165 ---GIQE----IHNSAFNGT-QLDELNLSDN-----------NNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLEN 224 (350)
T ss_dssp ---CCCE----ECTTSSTTE-EEEEEECTTC-----------TTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTT
T ss_pred ---cccC----CChhhcccc-chhHHhhccC-----------CcccCCCHHHhccCcccchhhcCCC-CcCccChhhhcc
Confidence 1100 111111222 6667776543 35556664 5688999999999998 6788886 4778
Q ss_pred ccccccccccccccCC---CCCCCCEEeccCC
Q 038130 465 LQGIFAHHCTALSSIS---YKSSTQLFDLSDN 493 (526)
Q Consensus 465 L~~L~l~~c~~L~~l~---~~~~L~~L~l~~c 493 (526)
|+.|.+.++..++.+| .+++|+.+++.++
T Consensus 225 L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 225 LKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp CCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred chHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence 8888888888887776 5788999998753
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=7e-17 Score=151.22 Aligned_cols=203 Identities=19% Similarity=0.253 Sum_probs=132.4
Q ss_pred CCCCCChhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccC-CcccCc-cccCCCCCCEEeccC-CccCccc
Q 038130 243 SLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTA-IEELPS-SIGCLSRLLYLYLSD-CKRLKSL 317 (526)
Q Consensus 243 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~-i~~lp~-~i~~L~~L~~L~L~~-~~~~~~l 317 (526)
.+..+|. + ..+|++|++++|. ++.+|. +..+++|++|++++|. ++.+|. .++++++|++|++++ |.+....
T Consensus 22 ~l~~ip~-~--~~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 22 DIQRIPS-L--PPSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp SCSSCCC-C--CTTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred CccccCC-C--CCcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 3667776 4 3478888888865 445443 7788888888888886 887765 678888889998887 6644433
Q ss_pred CcCCCCCCCCcEEeecCCCCCCcCCCcccCccccc--ceeecccc-ccccccChhhhcccCCcc-eEEcccCCCCCCCCC
Q 038130 318 PSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASN--STLYAKGT-AAKREVPSSIVGSNNNLY-ELSLDRSWGGDKQMG 393 (526)
Q Consensus 318 p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~--~~L~l~~~-~~~~~~~~~l~~~~~~L~-~L~l~~~~~~~~~~~ 393 (526)
+..+..+++|++|++++|. +..+|. ++.+++|+ ..|++++| .+ ..++...+..+++|+ .|+++.| ...
T Consensus 98 ~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l-~~i~~~~~~~l~~L~~~L~l~~n----~l~- 169 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYM-TSIPVNAFQGLCNETLTLKLYNN----GFT- 169 (239)
T ss_dssp TTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTC-CEECTTTTTTTBSSEEEEECCSC----CCC-
T ss_pred HHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcch-hhcCcccccchhcceeEEEcCCC----CCc-
Confidence 4567788888888888865 444665 55555443 17888888 77 666665444448888 8888443 211
Q ss_pred CCCCcccCcccccCcccEEEccCCC-CCCCCCccCCCCcccccHHHhcc-CCCCEecccCCccCCcCCC-cccccccccc
Q 038130 394 LSSPITLPLDGLHTTLTSLYLNYCG-ILELPDSLEKNNFERIPESIIQL-SRLVVLNLNYCERLQSLPK-LPFNLQGIFA 470 (526)
Q Consensus 394 ~~~~~~~~~~~~~~~L~~L~L~~~~-~~~lp~~l~~~~l~~lp~~l~~l-~~L~~L~L~~~~~l~~lp~-~~~~L~~L~l 470 (526)
. .+...... ++|+.|++++|. ++.+| +..+..+ ++|+.|++++| .+..+|. .+++|+.|++
T Consensus 170 ~---i~~~~~~~-~~L~~L~L~~n~~l~~i~-----------~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l 233 (239)
T 2xwt_C 170 S---VQGYAFNG-TKLDAVYLNKNKYLTVID-----------KDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIA 233 (239)
T ss_dssp E---ECTTTTTT-CEEEEEECTTCTTCCEEC-----------TTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEEC
T ss_pred c---cCHhhcCC-CCCCEEEcCCCCCcccCC-----------HHHhhccccCCcEEECCCC-ccccCChhHhccCceeec
Confidence 1 11111122 388888888884 54433 3456677 88999999887 4455553 2444444444
Q ss_pred ccc
Q 038130 471 HHC 473 (526)
Q Consensus 471 ~~c 473 (526)
.++
T Consensus 234 ~~~ 236 (239)
T 2xwt_C 234 RNT 236 (239)
T ss_dssp TTC
T ss_pred cCc
Confidence 443
No 76
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=99.71 E-value=9e-18 Score=145.26 Aligned_cols=122 Identities=42% Similarity=0.715 Sum_probs=99.0
Q ss_pred CCCCCCcEEEecccccccCchHHHHHHHHHhCCCceEeeC-CcCCCccchHHHHHHhhhceEE-EEecCCccchhhcHHH
Q 038130 9 FQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGN-DLKRGDEISQSLGDAVEVSSIY-IIFSESDASSSWCLDE 86 (526)
Q Consensus 9 ~~~~~~~~f~s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~-~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l~~~~~~~~ 86 (526)
+...+|||||||+|+|..+.|..+++.+|..+|+.+|.|+ ++++|+.|..+|.+...++..+ ++++..+..+.|+.+|
T Consensus 4 s~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~E 83 (176)
T 3jrn_A 4 HTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDE 83 (176)
T ss_dssp ---CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHH
T ss_pred CCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHH
Confidence 3568999999999999998999999999999999999997 8999999999999999999999 7778999999999999
Q ss_pred HHHHHHHHhhCCCeEEEEEeeccchhhhhccccHHHHHHHHHhh
Q 038130 87 LLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSFEDSFSKLEER 130 (526)
Q Consensus 87 w~~i~~~~~~~~~~il~~sY~~Lp~~lk~~cf~y~~~Fp~d~~i 130 (526)
+..|+++.......|+|+.|+.-|+++++|-..|...|-+...-
T Consensus 84 L~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~ 127 (176)
T 3jrn_A 84 LVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR 127 (176)
T ss_dssp HHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT
T ss_pred HHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc
Confidence 99999999888889999999999999999999999999886554
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=1.6e-16 Score=154.67 Aligned_cols=193 Identities=18% Similarity=0.257 Sum_probs=148.2
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD 310 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 310 (526)
..++.|++++| .+..++ .+..+++|++|++++|. +..++.+..+++|++|++++|.++.+| .+..+++|++|++++
T Consensus 41 ~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 41 DGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQ-ITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp HTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred CCcCEEEeeCC-CccCch-hhhccCCCCEEEccCCc-CCCChhHccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence 57899999985 556677 48889999999999975 556666889999999999999999876 689999999999999
Q ss_pred CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCC
Q 038130 311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDK 390 (526)
Q Consensus 311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 390 (526)
|.+ ..+|. +..+++|++|++++|.. ..++. ++.+++|+ .|++++|.+ ..++. +..+ ++|+.|+++.| .
T Consensus 117 n~l-~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~-~L~l~~n~l-~~~~~-l~~l-~~L~~L~l~~n----~ 184 (308)
T 1h6u_A 117 TQI-TDVTP-LAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQ-YLSIGNAQV-SDLTP-LANL-SKLTTLKADDN----K 184 (308)
T ss_dssp SCC-CCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCC-EEECCSSCC-CCCGG-GTTC-TTCCEEECCSS----C
T ss_pred CCC-CCchh-hcCCCCCCEEECCCCcc-CcCcc-ccCCCCcc-EEEccCCcC-CCChh-hcCC-CCCCEEECCCC----c
Confidence 874 44554 88999999999999754 44544 88889999 999999998 55655 5555 99999999543 2
Q ss_pred CCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCC
Q 038130 391 QMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLP 459 (526)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 459 (526)
.... .. +..+ ++|+.|++++|.++++ + .+..+++|+.|++++|+ +...|
T Consensus 185 l~~~---~~--l~~l-~~L~~L~L~~N~l~~~------------~-~l~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 185 ISDI---SP--LASL-PNLIEVHLKNNQISDV------------S-PLANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp CCCC---GG--GGGC-TTCCEEECTTSCCCBC------------G-GGTTCTTCCEEEEEEEE-EECCC
T ss_pred cCcC---hh--hcCC-CCCCEEEccCCccCcc------------c-cccCCCCCCEEEccCCe-eecCC
Confidence 2111 11 3344 4999999999876553 3 36789999999999985 34444
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=2.9e-18 Score=169.20 Aligned_cols=200 Identities=20% Similarity=0.192 Sum_probs=136.2
Q ss_pred cceEEEeccCCCCCCCChhcccc--CCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcc--cCccccCCCCCCEEe
Q 038130 232 TLVILNLSEYVSLNSLPAEILHL--EFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEE--LPSSIGCLSRLLYLY 307 (526)
Q Consensus 232 ~l~~L~l~~~~~~~~lp~~~~~l--~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~ 307 (526)
.++.++++++... +..+..+ +.++.|++++|......+.+..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 3678888875332 5556666 88888888887655556667778888889988888762 777788888899999
Q ss_pred ccCCccCcccCcCCCCCCCCcEEeecCCCCCC--cCCCcccCcccccceeecccc-ccccc-cChhhhcccC-CcceEEc
Q 038130 308 LSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQ--RLPDDFGNLEASNSTLYAKGT-AAKRE-VPSSIVGSNN-NLYELSL 382 (526)
Q Consensus 308 L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~~L~l~~~-~~~~~-~~~~l~~~~~-~L~~L~l 382 (526)
+++|.+....|..++.+++|++|++++|..++ .+|..+.++++|+ .|++++| .+++. ++..+..+ + +|++|++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~l-~~~L~~L~l 202 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD-ELNLSWCFDFTEKHVQVAVAHV-SETITQLNL 202 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC-EEECCCCTTCCHHHHHHHHHHS-CTTCCEEEC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC-EEcCCCCCCcChHHHHHHHHhc-ccCCCEEEe
Confidence 98887666777778888888888888874444 3566677788888 8888888 77433 45555555 7 8888888
Q ss_pred ccCCCCCC-CCCCCCCcccCcccccCcccEEEccCCC-CCCCCCccCCCCcccccHHHhccCCCCEecccCCc
Q 038130 383 DRSWGGDK-QMGLSSPITLPLDGLHTTLTSLYLNYCG-ILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCE 453 (526)
Q Consensus 383 ~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~ 453 (526)
.+|. .+.... .+..+.. .++|+.|++++|. ++. ..+..+..+++|+.|++++|.
T Consensus 203 ----~~~~~~~~~~~-l~~~~~~-~~~L~~L~l~~~~~l~~-----------~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 203 ----SGYRKNLQKSD-LSTLVRR-CPNLVHLDLSDSVMLKN-----------DCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp ----CSCGGGSCHHH-HHHHHHH-CTTCSEEECTTCTTCCG-----------GGGGGGGGCTTCCEEECTTCT
T ss_pred ----CCCcccCCHHH-HHHHHhh-CCCCCEEeCCCCCcCCH-----------HHHHHHhCCCCCCEeeCCCCC
Confidence 4432 111000 0111122 3378888888776 322 234466677788888888775
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=1.8e-16 Score=148.39 Aligned_cols=199 Identities=18% Similarity=0.213 Sum_probs=153.6
Q ss_pred CcceEEEeccCCCCCCCC-hhccccCCCcEEeeCCCCCCCcCC--CCCCCCcccEEEecc-cCCcccCc-cccCCCCCCE
Q 038130 231 NTLVILNLSEYVSLNSLP-AEILHLEFLKKLNLLGCSKLKRLP--EFSSSGKIEEIWLDG-TAIEELPS-SIGCLSRLLY 305 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp--~~~~l~~L~~L~L~~-~~i~~lp~-~i~~L~~L~~ 305 (526)
..++.|++++|. +..+| ..+.++++|++|++++|..++.++ .+.++++|++|++++ |.++.+|. .+.++++|++
T Consensus 31 ~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 478999999965 45555 478899999999999986566666 378999999999998 99998874 6899999999
Q ss_pred EeccCCccCcccCcCCCCCCCCc---EEeecCCCCCCcCCC-cccCcccccceeeccccccccccChhhhcccCCcceEE
Q 038130 306 LYLSDCKRLKSLPSSLSQLKSLK---LLNLHGCSNLQRLPD-DFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELS 381 (526)
Q Consensus 306 L~L~~~~~~~~lp~~i~~l~~L~---~L~l~~~~~~~~lp~-~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 381 (526)
|++++|.+ ..+|. +..+++|+ +|++++|..+..+|. .+.++++|+..|++++|.+ ..+|...+.. ++|+.|+
T Consensus 110 L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l-~~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 110 LGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp EEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC-CEECTTTTTT-CEEEEEE
T ss_pred EeCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC-cccCHhhcCC-CCCCEEE
Confidence 99999875 45887 88889998 999999845666665 5888888865799999999 6888888777 8999999
Q ss_pred cccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCcc
Q 038130 382 LDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCER 454 (526)
Q Consensus 382 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~ 454 (526)
++ ++..+...+ ...+.++.++|+.|++++|.++++| .. .+++|+.|+++++..
T Consensus 186 L~----~n~~l~~i~--~~~~~~l~~~L~~L~l~~N~l~~l~------------~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 186 LN----KNKYLTVID--KDAFGGVYSGPSLLDVSQTSVTALP------------SK--GLEHLKELIARNTWT 238 (239)
T ss_dssp CT----TCTTCCEEC--TTTTTTCSBCCSEEECTTCCCCCCC------------CT--TCTTCSEEECTTC--
T ss_pred cC----CCCCcccCC--HHHhhccccCCcEEECCCCccccCC------------hh--HhccCceeeccCccC
Confidence 94 442122111 1113344149999999999776654 22 688999999998753
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=3.4e-16 Score=152.29 Aligned_cols=190 Identities=20% Similarity=0.274 Sum_probs=138.3
Q ss_pred ccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEE
Q 038130 251 ILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLL 330 (526)
Q Consensus 251 ~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 330 (526)
..++++|++|++++|. +..+|.+..+++|++|++++|.+..++. +..+++|++|++++|. +..+| .+..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~-i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCCC-ccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEE
Confidence 4458888999998864 6667788888889999999888888877 8888899999999887 44455 47888899999
Q ss_pred eecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCccc
Q 038130 331 NLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLT 410 (526)
Q Consensus 331 ~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 410 (526)
++++|.. ..+|. +..+++|+ .|++++|.+ ..++. +..+ ++|+.|+++. |..... .. +..+. +|+
T Consensus 113 ~l~~n~l-~~~~~-l~~l~~L~-~L~l~~n~l-~~~~~-l~~l-~~L~~L~l~~----n~l~~~---~~--l~~l~-~L~ 176 (308)
T 1h6u_A 113 DLTSTQI-TDVTP-LAGLSNLQ-VLYLDLNQI-TNISP-LAGL-TNLQYLSIGN----AQVSDL---TP--LANLS-KLT 176 (308)
T ss_dssp ECTTSCC-CCCGG-GTTCTTCC-EEECCSSCC-CCCGG-GGGC-TTCCEEECCS----SCCCCC---GG--GTTCT-TCC
T ss_pred ECCCCCC-CCchh-hcCCCCCC-EEECCCCcc-CcCcc-ccCC-CCccEEEccC----CcCCCC---hh--hcCCC-CCC
Confidence 9988654 44543 88888888 899998888 55554 5555 8899999843 321111 11 33343 889
Q ss_pred EEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCC--cccccccccccccc
Q 038130 411 SLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK--LPFNLQGIFAHHCT 474 (526)
Q Consensus 411 ~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~--~~~~L~~L~l~~c~ 474 (526)
.|++++|.++++ + .+..+++|+.|++++|. +..+++ .+++|+.|++++++
T Consensus 177 ~L~l~~n~l~~~------------~-~l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 177 TLKADDNKISDI------------S-PLASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp EEECCSSCCCCC------------G-GGGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEEEE
T ss_pred EEECCCCccCcC------------h-hhcCCCCCCEEEccCCc-cCccccccCCCCCCEEEccCCe
Confidence 999888876553 3 26778889999998884 445543 25678888888764
No 81
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=9.2e-16 Score=152.15 Aligned_cols=217 Identities=18% Similarity=0.175 Sum_probs=165.4
Q ss_pred CcceEEEeccCCCCCCCCh-hccccCCCcEEeeCCCCCCCcCCC--CCCCCccc-EEEecccCCcccC-ccccCCCCCCE
Q 038130 231 NTLVILNLSEYVSLNSLPA-EILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIE-EIWLDGTAIEELP-SSIGCLSRLLY 305 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~-~L~L~~~~i~~lp-~~i~~L~~L~~ 305 (526)
.+++.|++++| .++.+|. .|.++++|++|+|++|...+.+|. |.++++++ .+.+++|.+..+| ..++.+++|++
T Consensus 30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 57899999995 5677775 588999999999999987777774 78888885 5677789999885 56899999999
Q ss_pred EeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCC-cccCcc-cccceeeccccccccccChhhhcccCCcceEEcc
Q 038130 306 LYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPD-DFGNLE-ASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLD 383 (526)
Q Consensus 306 L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~-~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~ 383 (526)
|++++|.+....+..+....++..|++.++..+..+|. .+..+. .++ .|++++|.+ ..++...+.. .+|++|.+
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~-~L~L~~N~i-~~i~~~~f~~-~~L~~l~l- 184 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV-ILWLNKNGI-QEIHNSAFNG-TQLDELNL- 184 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCE-EEECCSSCC-CEECTTSSTT-EEEEEEEC-
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhh-hhccccccc-cCCChhhccc-cchhHHhh-
Confidence 99999885554444556777889999988777777775 456665 466 899999999 7888888877 88999999
Q ss_pred cCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCc--
Q 038130 384 RSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKL-- 461 (526)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~-- 461 (526)
.++..+...+... +.++. +|+.|++++|+++.+| . ..+.+|+.|.+.++..++.+|.+
T Consensus 185 ---~~~n~l~~i~~~~--f~~l~-~L~~LdLs~N~l~~lp------------~--~~~~~L~~L~~l~~~~l~~lP~l~~ 244 (350)
T 4ay9_X 185 ---SDNNNLEELPNDV--FHGAS-GPVILDISRTRIHSLP------------S--YGLENLKKLRARSTYNLKKLPTLEK 244 (350)
T ss_dssp ---TTCTTCCCCCTTT--TTTEE-CCSEEECTTSCCCCCC------------S--SSCTTCCEEECTTCTTCCCCCCTTT
T ss_pred ---ccCCcccCCCHHH--hccCc-ccchhhcCCCCcCccC------------h--hhhccchHhhhccCCCcCcCCCchh
Confidence 4444333333221 33454 9999999999877655 2 23677888888888888888863
Q ss_pred ccccccccccc
Q 038130 462 PFNLQGIFAHH 472 (526)
Q Consensus 462 ~~~L~~L~l~~ 472 (526)
+++|+.+++.+
T Consensus 245 l~~L~~l~l~~ 255 (350)
T 4ay9_X 245 LVALMEASLTY 255 (350)
T ss_dssp CCSCCEEECSC
T ss_pred CcChhhCcCCC
Confidence 56777777753
No 82
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.67 E-value=3.2e-17 Score=160.42 Aligned_cols=242 Identities=14% Similarity=0.057 Sum_probs=176.3
Q ss_pred HhhcCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEE
Q 038130 227 VLIVNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYL 306 (526)
Q Consensus 227 ~~~~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 306 (526)
+.....+++|++++|.. ...++ +..+++|++|++++|. +..++ ..++|++|++++|.++.++.. .+++|++|
T Consensus 54 ~~~l~~L~~L~Ls~n~l-~~~~~-~~~l~~L~~L~Ls~n~-l~~l~---~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L 125 (317)
T 3o53_A 54 LAPFTKLELLNLSSNVL-YETLD-LESLSTLRTLDLNNNY-VQELL---VGPSIETLHAANNNISRVSCS--RGQGKKNI 125 (317)
T ss_dssp HTTCTTCCEEECTTSCC-EEEEE-ETTCTTCCEEECCSSE-EEEEE---ECTTCCEEECCSSCCSEEEEC--CCSSCEEE
T ss_pred hhCCCcCCEEECCCCcC-Ccchh-hhhcCCCCEEECcCCc-ccccc---CCCCcCEEECCCCccCCcCcc--ccCCCCEE
Confidence 34457899999999654 33444 8889999999999975 44443 448899999999999987653 47899999
Q ss_pred eccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcc-cCcccccceeeccccccccccChhhhcccCCcceEEcccC
Q 038130 307 YLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDF-GNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRS 385 (526)
Q Consensus 307 ~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~-~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 385 (526)
++++|.+....|..+..+++|++|++++|......|..+ ..+++|+ .|++++|.+ ..++... .+ ++|+.|+++.|
T Consensus 126 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~-~L~L~~N~l-~~~~~~~-~l-~~L~~L~Ls~N 201 (317)
T 3o53_A 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE-HLNLQYNFI-YDVKGQV-VF-AKLKTLDLSSN 201 (317)
T ss_dssp ECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC-EEECTTSCC-CEEECCC-CC-TTCCEEECCSS
T ss_pred ECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCC-EEECCCCcC-ccccccc-cc-ccCCEEECCCC
Confidence 999998777667788899999999999987665555655 4788999 999999999 5555443 34 99999999544
Q ss_pred CCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccC-CcCCCc---
Q 038130 386 WGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERL-QSLPKL--- 461 (526)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l-~~lp~~--- 461 (526)
.... .+..+..+ ++|+.|++++|.++ .+|..+..+++|+.|++++|+.. +.+|..
T Consensus 202 ----~l~~----l~~~~~~l-~~L~~L~L~~N~l~------------~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 202 ----KLAF----MGPEFQSA-AGVTWISLRNNKLV------------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp ----CCCE----ECGGGGGG-TTCSEEECTTSCCC------------EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred ----cCCc----chhhhccc-CcccEEECcCCccc------------chhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence 2111 11113344 49999999998654 45666778899999999999765 445442
Q ss_pred cccccccccccccccccCC----CCCCCCEEeccCCCCCCHHHH
Q 038130 462 PFNLQGIFAHHCTALSSIS----YKSSTQLFDLSDNFKLDRNAV 501 (526)
Q Consensus 462 ~~~L~~L~l~~c~~L~~l~----~~~~L~~L~l~~c~~l~~~~~ 501 (526)
.++|+.|++.++..++... ..+.+....-..|..+.....
T Consensus 261 ~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~~~~~ 304 (317)
T 3o53_A 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304 (317)
T ss_dssp CHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCTTTHH
T ss_pred cccceEEECCCchhccCCchhccCCCceecccceeeccCChhHH
Confidence 5678888888777666543 233444444555777765443
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.67 E-value=2.2e-15 Score=142.08 Aligned_cols=189 Identities=20% Similarity=0.119 Sum_probs=126.0
Q ss_pred cceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCc-cccCCCCCCEEecc
Q 038130 232 TLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLS 309 (526)
Q Consensus 232 ~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~ 309 (526)
..+.+++++ ..+..+|..+. +.|+.|++++|......+. +..+++|++|++++|.++.++. .+..+++|++|+++
T Consensus 15 ~~~~l~~~~-~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQG-KSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTT-CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCC-CCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 456788877 56677777654 6788888888764444443 7888888888888888886654 47888888888888
Q ss_pred CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChh-hhcccCCcceEEcccCCCC
Q 038130 310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSS-IVGSNNNLYELSLDRSWGG 388 (526)
Q Consensus 310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~-l~~~~~~L~~L~l~~~~~~ 388 (526)
+|.+....+..+..+++|++|++++|......+..+.++++|+ .|++++|.+ ..++.. +..+ ++|+.|+++.|
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l-~~~~~~~~~~l-~~L~~L~L~~N--- 165 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK-ELRLNTNQL-QSIPAGAFDKL-TNLQTLSLSTN--- 165 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSCC-CCCCTTTTTTC-TTCCEEECCSS---
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCccc-EEECcCCcC-CccCHHHcCcC-cCCCEEECCCC---
Confidence 8876555555677888888888888654433334467888888 888888888 556554 4444 88888888443
Q ss_pred CCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHh
Q 038130 389 DKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESII 439 (526)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~ 439 (526)
... ......+..+. +|+.|++++|.+...+ +.+..++.|+.
T Consensus 166 -~l~---~~~~~~~~~l~-~L~~L~l~~N~~~c~~-----~~~~~l~~~~~ 206 (251)
T 3m19_A 166 -QLQ---SVPHGAFDRLG-KLQTITLFGNQFDCSR-----CEILYLSQWIR 206 (251)
T ss_dssp -CCS---CCCTTTTTTCT-TCCEEECCSCCBCTTS-----TTHHHHHHHHH
T ss_pred -cCC---ccCHHHHhCCC-CCCEEEeeCCceeCCc-----cccHHHHHHHH
Confidence 211 11111122333 7888888888765421 24444555654
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=3.1e-15 Score=141.02 Aligned_cols=179 Identities=22% Similarity=0.251 Sum_probs=132.9
Q ss_pred CCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCc-cccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEee
Q 038130 255 EFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNL 332 (526)
Q Consensus 255 ~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 332 (526)
...++++++++ .+..+|. +. .+++.|++++|.+..++. .++++++|++|++++|.+.+..|..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45778899885 4667775 43 578999999999986654 6889999999999998877666667888999999999
Q ss_pred cCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEE
Q 038130 333 HGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSL 412 (526)
Q Consensus 333 ~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 412 (526)
++|......+..+..+++|+ .|++++|.+ ..++...+..+++|+.|+++.| .. .......+..+. +|+.|
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~-~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N----~l---~~~~~~~~~~l~-~L~~L 160 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLD-KLYLGGNQL-KSLPSGVFDRLTKLKELRLNTN----QL---QSIPAGAFDKLT-NLQTL 160 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCC-EEECCSSCC-CCCCTTTTTTCTTCCEEECCSS----CC---CCCCTTTTTTCT-TCCEE
T ss_pred CCCcccccChhHhcccCCCC-EEEcCCCcC-CCcChhHhccCCcccEEECcCC----cC---CccCHHHcCcCc-CCCEE
Confidence 99766555556678899999 999999999 5677665444499999999544 21 111111233444 89999
Q ss_pred EccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCc
Q 038130 413 YLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQS 457 (526)
Q Consensus 413 ~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~ 457 (526)
+|++|.++++| +..+..+++|+.|++++|+....
T Consensus 161 ~L~~N~l~~~~-----------~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 161 SLSTNQLQSVP-----------HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ECCSSCCSCCC-----------TTTTTTCTTCCEEECCSCCBCTT
T ss_pred ECCCCcCCccC-----------HHHHhCCCCCCEEEeeCCceeCC
Confidence 99998776654 34667889999999999865443
No 85
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.66 E-value=2.5e-15 Score=161.09 Aligned_cols=139 Identities=20% Similarity=0.181 Sum_probs=113.0
Q ss_pred CCCCCCChhccccCCCcEEeeCCCCCCCcCC--CCCCCCcccEEEecccCCcccCc-cccCCCCCCEEeccCCccCcccC
Q 038130 242 VSLNSLPAEILHLEFLKKLNLLGCSKLKRLP--EFSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLSDCKRLKSLP 318 (526)
Q Consensus 242 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp 318 (526)
..+..+|..+. +.+++|+|++|. ++.+| .|.++++|++|+|++|.|+.+|. .|++|++|++|+|++|.+.+..|
T Consensus 41 ~~l~~vP~~lp--~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 41 LNFYKIPDNLP--FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp SCCSSCCSSSC--TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CCcCccCCCCC--cCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 56778887652 579999999975 56665 38999999999999999998876 58999999999999998544444
Q ss_pred cCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecccccccc-ccChhhhcccCCcceEEcccC
Q 038130 319 SSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKR-EVPSSIVGSNNNLYELSLDRS 385 (526)
Q Consensus 319 ~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~-~~~~~l~~~~~~L~~L~l~~~ 385 (526)
..+.++++|++|++++|......+..|+++++|+ .|++++|.+.. .+|..+..+ ++|++|+++.|
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~-~L~Ls~N~l~~~~~~~~~~~l-~~L~~L~L~~N 183 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK-ELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSN 183 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC-EEECCSSCCCCCCCCGGGGGC-TTCCEEECCSS
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccC-eeccccCccccCCCchhhccc-hhhhhhcccCc
Confidence 5689999999999999765444445699999999 99999999843 356666666 99999999654
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=9.1e-16 Score=149.54 Aligned_cols=149 Identities=15% Similarity=0.067 Sum_probs=63.8
Q ss_pred cceEEEeccCCCCCCCChhc--cccCCCcEEeeCCCCCCCcCCC-----CCCCCcccEEEecccCCcccC-ccccCCCCC
Q 038130 232 TLVILNLSEYVSLNSLPAEI--LHLEFLKKLNLLGCSKLKRLPE-----FSSSGKIEEIWLDGTAIEELP-SSIGCLSRL 303 (526)
Q Consensus 232 ~l~~L~l~~~~~~~~lp~~~--~~l~~L~~L~l~~~~~~~~lp~-----~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L 303 (526)
.++.|++++|......|..+ ..+++|++|++++|......+. +..+++|++|++++|.+..+| ..++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 35555555544444444433 4455555555555443322221 233445555555555554333 344455555
Q ss_pred CEEeccCCccCcc--cC--cCCCCCCCCcEEeecCCCCCCcCCCc----ccCcccccceeeccccccccccChhhhcc--
Q 038130 304 LYLYLSDCKRLKS--LP--SSLSQLKSLKLLNLHGCSNLQRLPDD----FGNLEASNSTLYAKGTAAKREVPSSIVGS-- 373 (526)
Q Consensus 304 ~~L~L~~~~~~~~--lp--~~i~~l~~L~~L~l~~~~~~~~lp~~----~~~l~~L~~~L~l~~~~~~~~~~~~l~~~-- 373 (526)
++|++++|.+.+. ++ ..+..+++|++|++++|.. +.+|.. ++.+++|+ +|++++|.+.+..|..+...
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~-~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPH-SLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCS-SEECTTSCCCCCCCSCCSSCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCC-EEECCCCCCCccchhhHHhccC
Confidence 5555555443321 11 1123445555555555322 222221 23344444 55555555533334333322
Q ss_pred cCCcceEEc
Q 038130 374 NNNLYELSL 382 (526)
Q Consensus 374 ~~~L~~L~l 382 (526)
+++|++|++
T Consensus 250 ~~~L~~L~L 258 (310)
T 4glp_A 250 SSALNSLNL 258 (310)
T ss_dssp CTTCCCEEC
T ss_pred cCcCCEEEC
Confidence 134444444
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.65 E-value=7.8e-18 Score=169.58 Aligned_cols=254 Identities=15% Similarity=0.090 Sum_probs=145.6
Q ss_pred CCCChhccccCCCcEEeeCCCCCCCc----CC-CCCCCCcccEEEecccCCc----ccCccc-------cCCCCCCEEec
Q 038130 245 NSLPAEILHLEFLKKLNLLGCSKLKR----LP-EFSSSGKIEEIWLDGTAIE----ELPSSI-------GCLSRLLYLYL 308 (526)
Q Consensus 245 ~~lp~~~~~l~~L~~L~l~~~~~~~~----lp-~~~~l~~L~~L~L~~~~i~----~lp~~i-------~~L~~L~~L~L 308 (526)
..++..+..+++|++|++++|..... ++ .+..+++|++|+|+++.+. .+|..+ ..+++|++|+|
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 34556666677777777777643322 11 2556777777777765443 234333 56777777777
Q ss_pred cCCccCc----ccCcCCCCCCCCcEEeecCCCCCCc----CCCcccCc---------ccccceeeccccccc-cccC---
Q 038130 309 SDCKRLK----SLPSSLSQLKSLKLLNLHGCSNLQR----LPDDFGNL---------EASNSTLYAKGTAAK-REVP--- 367 (526)
Q Consensus 309 ~~~~~~~----~lp~~i~~l~~L~~L~l~~~~~~~~----lp~~~~~l---------~~L~~~L~l~~~~~~-~~~~--- 367 (526)
++|.+.. .+|..+..+++|++|++++|..... ++..+..+ ++|+ .|++++|.+. ..++
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR-SIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC-EEECCSSCCTGGGHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCc-EEECCCCCCCcHHHHHHH
Confidence 7776554 3566667777777777777654322 22223333 6677 7777777774 2333
Q ss_pred hhhhcccCCcceEEcccCCCCCCCCCCCC---CcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCC
Q 038130 368 SSIVGSNNNLYELSLDRSWGGDKQMGLSS---PITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRL 444 (526)
Q Consensus 368 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L 444 (526)
..+... ++|++|+++.| .. ...+ ..+..+..+ ++|+.|+|++|.++. .....+|..+..+++|
T Consensus 181 ~~l~~~-~~L~~L~L~~n----~l-~~~g~~~l~~~~l~~~-~~L~~L~Ls~n~l~~-------~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 181 KTFQSH-RLLHTVKMVQN----GI-RPEGIEHLLLEGLAYC-QELKVLDLQDNTFTH-------LGSSALAIALKSWPNL 246 (386)
T ss_dssp HHHHHC-TTCCEEECCSS----CC-CHHHHHHHHHTTGGGC-TTCCEEECCSSCCHH-------HHHHHHHHHGGGCTTC
T ss_pred HHHHhC-CCcCEEECcCC----CC-CHhHHHHHHHHHhhcC-CCccEEECcCCCCCc-------HHHHHHHHHHccCCCc
Confidence 233344 77777777433 11 0000 000012233 378888887776431 0123566677777888
Q ss_pred CEecccCCccCCc----CCCc-----cccccccccccccccc----cCC-----CCCCCCEEeccCCCCCCHHHHHHHHH
Q 038130 445 VVLNLNYCERLQS----LPKL-----PFNLQGIFAHHCTALS----SIS-----YKSSTQLFDLSDNFKLDRNAVRIIVE 506 (526)
Q Consensus 445 ~~L~L~~~~~l~~----lp~~-----~~~L~~L~l~~c~~L~----~l~-----~~~~L~~L~l~~c~~l~~~~~~~~~~ 506 (526)
+.|+|++|..... +|.. .++|+.|++++|.--. .++ .+++|++|++++|+--........+.
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~ 326 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIR 326 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHH
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHH
Confidence 8888887753222 2321 4677788887765333 133 37999999999997655554333444
Q ss_pred HHHhhhH
Q 038130 507 DALQDIQ 513 (526)
Q Consensus 507 ~~~~~~~ 513 (526)
..+++.+
T Consensus 327 ~~l~~~~ 333 (386)
T 2ca6_A 327 EVFSTRG 333 (386)
T ss_dssp HHHHHHT
T ss_pred HHhhhcC
Confidence 4455544
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=9.7e-17 Score=156.44 Aligned_cols=227 Identities=15% Similarity=0.120 Sum_probs=146.7
Q ss_pred hhcCcceEEEeccCCCCC----CCChhccccCCCcEEeeCCCCCCCcCCC-C--CCCCcccEEEecccCCcc-cC----c
Q 038130 228 LIVNTLVILNLSEYVSLN----SLPAEILHLEFLKKLNLLGCSKLKRLPE-F--SSSGKIEEIWLDGTAIEE-LP----S 295 (526)
Q Consensus 228 ~~~~~l~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~--~~l~~L~~L~L~~~~i~~-lp----~ 295 (526)
.....++.+.+.++.... .+.. +..+++|++|++++|......|. + ..+.+|++|++++|.+.. .| .
T Consensus 61 ~~~~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 61 VKALRVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp GSSCCCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred hhhcceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 344456777777643211 1111 22357799999999876656664 4 788999999999998874 22 3
Q ss_pred cccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCc--C--CCcccCcccccceeeccccccccccChh--
Q 038130 296 SIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQR--L--PDDFGNLEASNSTLYAKGTAAKREVPSS-- 369 (526)
Q Consensus 296 ~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~--l--p~~~~~l~~L~~~L~l~~~~~~~~~~~~-- 369 (526)
.+..+++|++|++++|.+....|..++.+++|++|++++|...+. + +..++.+++|+ .|++++|.+ ..++..
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~-~L~Ls~N~l-~~l~~~~~ 217 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQ-NLALRNTGM-ETPTGVCA 217 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCC-SCBCCSSCC-CCHHHHHH
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCC-EEECCCCCC-CchHHHHH
Confidence 356788999999999887666677888999999999999765432 2 22346788888 999999988 444442
Q ss_pred -hhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEec
Q 038130 370 -IVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLN 448 (526)
Q Consensus 370 -l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~ 448 (526)
+...+++|++|+++.| ......+.....+.+. ++|++|++++|.++++| ..+ .++|+.|+
T Consensus 218 ~l~~~l~~L~~L~Ls~N----~l~~~~p~~~~~~~~~-~~L~~L~Ls~N~l~~lp------------~~~--~~~L~~L~ 278 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHN----SLRATVNPSAPRCMWS-SALNSLNLSFAGLEQVP------------KGL--PAKLRVLD 278 (310)
T ss_dssp HHHHHTCCCSSEECTTS----CCCCCCCSCCSSCCCC-TTCCCEECCSSCCCSCC------------SCC--CSCCSCEE
T ss_pred HHHhcCCCCCEEECCCC----CCCccchhhHHhccCc-CcCCEEECCCCCCCchh------------hhh--cCCCCEEE
Confidence 3333388899988554 2111111111111112 48888888888766554 222 26888888
Q ss_pred ccCCccCCcCCCccccccccccccccccccCCCCCCCCEEeccCCCC
Q 038130 449 LNYCERLQSLPKLPFNLQGIFAHHCTALSSISYKSSTQLFDLSDNFK 495 (526)
Q Consensus 449 L~~~~~l~~lp~~~~~L~~L~l~~c~~L~~l~~~~~L~~L~l~~c~~ 495 (526)
+++|. +..+|. +..+++|+.|++++|+-
T Consensus 279 Ls~N~-l~~~~~------------------~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 279 LSSNR-LNRAPQ------------------PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCSCC-CCSCCC------------------TTSCCCCSCEECSSTTT
T ss_pred CCCCc-CCCCch------------------hhhCCCccEEECcCCCC
Confidence 88883 333321 23457777888888763
No 89
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=8.3e-16 Score=159.24 Aligned_cols=196 Identities=17% Similarity=0.116 Sum_probs=138.6
Q ss_pred CCChhcccc----CCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcC
Q 038130 246 SLPAEILHL----EFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSS 320 (526)
Q Consensus 246 ~lp~~~~~l----~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~ 320 (526)
.+|..+..+ ++|++|++++|......| .+..+++|++|+|++|.++.+++ ++.+++|++|+|++|.+ ..+|.
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~~- 97 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV-QELLV- 97 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEE-EEEEE-
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcC-CCCCC-
Confidence 445544444 489999999986544444 48999999999999999987665 99999999999999874 44543
Q ss_pred CCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCccc
Q 038130 321 LSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITL 400 (526)
Q Consensus 321 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 400 (526)
.++|++|++++|......+. .+++|+ .|++++|.+.+..|..+..+ ++|+.|+++.| . ..+..+.
T Consensus 98 ---~~~L~~L~L~~N~l~~~~~~---~l~~L~-~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N----~---l~~~~~~ 162 (487)
T 3oja_A 98 ---GPSIETLHAANNNISRVSCS---RGQGKK-NIYLANNKITMLRDLDEGCR-SRVQYLDLKLN----E---IDTVNFA 162 (487)
T ss_dssp ---CTTCCEEECCSSCCCCEEEC---CCSSCE-EEECCSSCCCSGGGBCGGGG-SSEEEEECTTS----C---CCEEEGG
T ss_pred ---CCCcCEEECcCCcCCCCCcc---ccCCCC-EEECCCCCCCCCCchhhcCC-CCCCEEECCCC----C---CCCcChH
Confidence 38999999999765554443 356788 99999999965556666666 99999999554 2 2221222
Q ss_pred CcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCc---cccccccccccc
Q 038130 401 PLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKL---PFNLQGIFAHHC 473 (526)
Q Consensus 401 ~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~---~~~L~~L~l~~c 473 (526)
.+....++|+.|+|++|.++++| ....+++|+.|+|++|. +..+|+. +++|+.|+++++
T Consensus 163 ~l~~~l~~L~~L~Ls~N~l~~~~-------------~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYNFIYDVK-------------GQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEE-------------CCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS
T ss_pred HHhhhCCcccEEecCCCcccccc-------------ccccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCC
Confidence 23323359999999999766532 22358899999999984 4455532 345666666654
No 90
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.62 E-value=2.2e-17 Score=170.30 Aligned_cols=239 Identities=16% Similarity=0.100 Sum_probs=116.3
Q ss_pred cCcceEEEeccCCCCC----CCChhccccCCCcEEeeCCCCCCCc-CCCC-CCCC----cccEEEecccCCc-----ccC
Q 038130 230 VNTLVILNLSEYVSLN----SLPAEILHLEFLKKLNLLGCSKLKR-LPEF-SSSG----KIEEIWLDGTAIE-----ELP 294 (526)
Q Consensus 230 ~~~l~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~-lp~~-~~l~----~L~~L~L~~~~i~-----~lp 294 (526)
.+++++|++++|.... .++..+..+++|++|++++|..... +..+ ..+. +|++|++++|.++ .+|
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 3566777777654221 3345556667777777776542221 1111 1222 5677777777666 346
Q ss_pred ccccCCCCCCEEeccCCccCcccCcC-----CCCCCCCcEEeecCCCCCCc----CCCcccCcccccceeeccccccccc
Q 038130 295 SSIGCLSRLLYLYLSDCKRLKSLPSS-----LSQLKSLKLLNLHGCSNLQR----LPDDFGNLEASNSTLYAKGTAAKRE 365 (526)
Q Consensus 295 ~~i~~L~~L~~L~L~~~~~~~~lp~~-----i~~l~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~~L~l~~~~~~~~ 365 (526)
..+..+++|++|++++|.+....+.. ....++|++|++++|..... ++..+..+++|+ .|++++|.+...
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~-~L~L~~n~i~~~ 185 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK-ELTVSNNDINEA 185 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCC-EEECCSSBCHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCC-EEECcCCCcchH
Confidence 66667777777777776643222211 11245667777766543331 233444556666 666666665332
Q ss_pred cChhhhc----ccCCcceEEcccCCCCCCCCCCCC-CcccCcccccCcccEEEccCCCCCCC-------------CCc--
Q 038130 366 VPSSIVG----SNNNLYELSLDRSWGGDKQMGLSS-PITLPLDGLHTTLTSLYLNYCGILEL-------------PDS-- 425 (526)
Q Consensus 366 ~~~~l~~----~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~l-------------p~~-- 425 (526)
.+..+.. ..++|++|+++ +|....... .....+.. .++|++|++++|.++.. +..
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~----~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~ 260 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLE----SCGVTSDNCRDLCGIVAS-KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECT----TSCCBTTHHHHHHHHHHH-CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred HHHHHHHHHhcCCCCceEEEcc----CCCCcHHHHHHHHHHHHh-CCCccEEeccCCcCChHHHHHHHHHHhcCCCCceE
Confidence 2222221 12466666663 221100000 00000111 12555555555544321 110
Q ss_pred --cCCCCccc-----ccHHHhccCCCCEecccCCccCCc----CC----Ccccccccccccccc
Q 038130 426 --LEKNNFER-----IPESIIQLSRLVVLNLNYCERLQS----LP----KLPFNLQGIFAHHCT 474 (526)
Q Consensus 426 --l~~~~l~~-----lp~~l~~l~~L~~L~L~~~~~l~~----lp----~~~~~L~~L~l~~c~ 474 (526)
+++|.++. ++..+..+++|++|++++|..-.. +. ...++|+.|++++|.
T Consensus 261 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred EECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 44445544 566677777788888877742111 11 112466666666654
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=4.9e-15 Score=142.85 Aligned_cols=169 Identities=24% Similarity=0.372 Sum_probs=96.8
Q ss_pred cccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEe
Q 038130 252 LHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLN 331 (526)
Q Consensus 252 ~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 331 (526)
..+++|++|++++|. +..++.+..+++|++|++++|.++.++. +..+++|++|++++|.+ ..+|. +..+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~-i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV-KDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCC-cccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcC-CCChh-hccCCCCCEEE
Confidence 346666666666643 4455556666666666666666666555 66666666666666653 33443 66666666666
Q ss_pred ecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccE
Q 038130 332 LHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTS 411 (526)
Q Consensus 332 l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 411 (526)
+++|.. ..+ ..+..+++|+ .|++++|.+ ..+ ..+..+ ++|+.|+++.| ..... .+ +..+. +|+.
T Consensus 119 L~~n~i-~~~-~~l~~l~~L~-~L~l~~n~l-~~~-~~l~~l-~~L~~L~L~~N----~l~~~---~~--l~~l~-~L~~ 182 (291)
T 1h6t_A 119 LEHNGI-SDI-NGLVHLPQLE-SLYLGNNKI-TDI-TVLSRL-TKLDTLSLEDN----QISDI---VP--LAGLT-KLQN 182 (291)
T ss_dssp CTTSCC-CCC-GGGGGCTTCC-EEECCSSCC-CCC-GGGGGC-TTCSEEECCSS----CCCCC---GG--GTTCT-TCCE
T ss_pred CCCCcC-CCC-hhhcCCCCCC-EEEccCCcC-Ccc-hhhccC-CCCCEEEccCC----ccccc---hh--hcCCC-ccCE
Confidence 666533 333 3456666666 666666666 333 334444 66677766332 21111 11 22333 7777
Q ss_pred EEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCc
Q 038130 412 LYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCE 453 (526)
Q Consensus 412 L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~ 453 (526)
|++++|.++. +| .+..+++|+.|++++|+
T Consensus 183 L~L~~N~i~~------------l~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 183 LYLSKNHISD------------LR-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp EECCSSCCCB------------CG-GGTTCTTCSEEEEEEEE
T ss_pred EECCCCcCCC------------Ch-hhccCCCCCEEECcCCc
Confidence 7777765443 23 35667777777777764
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=1.5e-16 Score=156.93 Aligned_cols=236 Identities=15% Similarity=0.111 Sum_probs=173.2
Q ss_pred CCCcEEeeCCCCCCCcCCCCCCC--CcccEEEecccCCcccCccccCCCCCCEEeccCCccCcc-cCcCCCCCCCCcEEe
Q 038130 255 EFLKKLNLLGCSKLKRLPEFSSS--GKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKS-LPSSLSQLKSLKLLN 331 (526)
Q Consensus 255 ~~L~~L~l~~~~~~~~lp~~~~l--~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~-lp~~i~~l~~L~~L~ 331 (526)
..++.++++++.... ..+..+ .+++.|++++|.+...+..+..+++|++|++++|.+... +|..+..+++|++|+
T Consensus 47 ~~~~~l~l~~~~~~~--~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP--DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TTSSEEECTTCBCCH--HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hhheeeccccccCCH--HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 347899999865331 124445 789999999999997777788999999999999986654 787889999999999
Q ss_pred ecCCCCCCcCCCcccCcccccceeecccc-cccc-ccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccC-c
Q 038130 332 LHGCSNLQRLPDDFGNLEASNSTLYAKGT-AAKR-EVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHT-T 408 (526)
Q Consensus 332 l~~~~~~~~lp~~~~~l~~L~~~L~l~~~-~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ 408 (526)
+++|......|..++++++|+ .|++++| .+++ .++..+... ++|++|++ .+|..+...+ . .......+ +
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~-~L~L~~~~~l~~~~l~~~~~~~-~~L~~L~l----~~~~~l~~~~-~-~~~~~~l~~~ 196 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLV-RLNLSGCSGFSEFALQTLLSSC-SRLDELNL----SWCFDFTEKH-V-QVAVAHVSET 196 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCS-EEECTTCBSCCHHHHHHHHHHC-TTCCEEEC----CCCTTCCHHH-H-HHHHHHSCTT
T ss_pred CcCcccCHHHHHHHhcCCCCC-EEECCCCCCCCHHHHHHHHhcC-CCCCEEcC----CCCCCcChHH-H-HHHHHhcccC
Confidence 999876666777888999999 9999999 6744 255555555 99999999 5552222110 0 11123345 9
Q ss_pred ccEEEccCCC--CCCCCCccCCCCcccccHHHhccCCCCEecccCCccCC-cCCC---ccccccccccccccccc-----
Q 038130 409 LTSLYLNYCG--ILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQ-SLPK---LPFNLQGIFAHHCTALS----- 477 (526)
Q Consensus 409 L~~L~L~~~~--~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~-~lp~---~~~~L~~L~l~~c~~L~----- 477 (526)
|++|++++|. ++. ..+|..+..+++|+.|++++|..++ ..+. ..++|+.|++++|..+.
T Consensus 197 L~~L~l~~~~~~~~~----------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 266 (336)
T 2ast_B 197 ITQLNLSGYRKNLQK----------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL 266 (336)
T ss_dssp CCEEECCSCGGGSCH----------HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG
T ss_pred CCEEEeCCCcccCCH----------HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHH
Confidence 9999999984 221 3567788899999999999997543 3332 25799999999996443
Q ss_pred cCCCCCCCCEEeccCCCCCCHHHHHHHHHHHHhhhH
Q 038130 478 SISYKSSTQLFDLSDNFKLDRNAVRIIVEDALQDIQ 513 (526)
Q Consensus 478 ~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 513 (526)
.+..+++|+.|++++| ++......+. ..++.++
T Consensus 267 ~l~~~~~L~~L~l~~~--i~~~~~~~l~-~~l~~L~ 299 (336)
T 2ast_B 267 ELGEIPTLKTLQVFGI--VPDGTLQLLK-EALPHLQ 299 (336)
T ss_dssp GGGGCTTCCEEECTTS--SCTTCHHHHH-HHSTTSE
T ss_pred HHhcCCCCCEEeccCc--cCHHHHHHHH-hhCcceE
Confidence 3557999999999999 6665555443 2344444
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=4.5e-15 Score=134.46 Aligned_cols=144 Identities=15% Similarity=0.197 Sum_probs=86.3
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcc-cCccccCCCCCCEEecc
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEE-LPSSIGCLSRLLYLYLS 309 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~L~ 309 (526)
..++.|++++| .+..+| .+..+++|++|++++| .+..++.+..+++|++|++++|.++. .|..++.+++|++|+++
T Consensus 44 ~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 35666777663 344555 4666677777777766 44555556666666777777666663 55666666677777777
Q ss_pred CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEc
Q 038130 310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSL 382 (526)
Q Consensus 310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 382 (526)
+|.+....|..+..+++|++|++++|..++.+| .+..+++|+ .|++++|.+ ..++ .+..+ ++|+.|++
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~-~L~l~~n~i-~~~~-~l~~l-~~L~~L~l 188 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELK-SLNIQFDGV-HDYR-GIEDF-PKLNQLYA 188 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCC-EEECTTBCC-CCCT-TGGGC-SSCCEEEE
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCC-EEECCCCCC-cChH-HhccC-CCCCEEEe
Confidence 666555555556666666666666655445554 456666666 666666665 3333 33333 44444444
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=6.7e-15 Score=154.03 Aligned_cols=190 Identities=18% Similarity=0.204 Sum_probs=143.1
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD 310 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 310 (526)
.+++.|++++| .+..+|..+ +++|++|++++|. +..+| ..+++|++|++++|.|+.+|. +.. +|++|++++
T Consensus 59 ~~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N~-l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSSLPDNL--PPQITVLEITQNA-LISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSS-CCSCCCSCC--CTTCSEEECCSSC-CSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCC-CCCccCHhH--cCCCCEEECcCCC-Ccccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 47899999996 456688766 4899999999975 55788 667899999999999999998 765 999999999
Q ss_pred CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCC
Q 038130 311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDK 390 (526)
Q Consensus 311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 390 (526)
|.+.+ +|. .+++|++|++++|. ++.+|. .+++|+ .|++++|.+ ..+|. +. ++|+.|+++.| .
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~-~L~Ls~N~L-~~lp~-l~---~~L~~L~Ls~N----~ 191 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQ-LTMLPE---LPTSLE-VLSVRNNQL-TFLPE-LP---ESLEALDVSTN----L 191 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSC-CSCCCC---CCTTCC-EEECCSSCC-SCCCC-CC---TTCCEEECCSS----C
T ss_pred CcCCC-CCC---cCccccEEeCCCCc-cCcCCC---cCCCcC-EEECCCCCC-CCcch-hh---CCCCEEECcCC----C
Confidence 98554 887 68999999999965 455776 567888 999999999 55887 43 89999999554 2
Q ss_pred CCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCC
Q 038130 391 QMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK 460 (526)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~ 460 (526)
.. ..+.....+....+.|+.|+|++|.++ .+|.++..+++|+.|+|++|+..+.+|.
T Consensus 192 L~-~lp~~~~~L~~~~~~L~~L~Ls~N~l~------------~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 192 LE-SLPAVPVRNHHSEETEIFFRCRENRIT------------HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CS-SCCCCC--------CCEEEECCSSCCC------------CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred CC-chhhHHHhhhcccccceEEecCCCcce------------ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 11 111111011111123399999998654 5677778899999999999976666554
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.60 E-value=7.9e-17 Score=160.67 Aligned_cols=247 Identities=15% Similarity=0.115 Sum_probs=130.2
Q ss_pred EEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC------CCCCCC-cccEEEecccCCccc-CccccCC-----CC
Q 038130 236 LNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP------EFSSSG-KIEEIWLDGTAIEEL-PSSIGCL-----SR 302 (526)
Q Consensus 236 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp------~~~~l~-~L~~L~L~~~~i~~l-p~~i~~L-----~~ 302 (526)
++++.+.....+|..+...++|++|++++|. +...+ .+..++ +|++|++++|.++.. +..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3455544444445544444557777777754 33332 144555 677777777776643 3334433 67
Q ss_pred CCEEeccCCccCcccCcC----CCCC-CCCcEEeecCCCCCCcCCCc----ccC-cccccceeecccccccc----ccCh
Q 038130 303 LLYLYLSDCKRLKSLPSS----LSQL-KSLKLLNLHGCSNLQRLPDD----FGN-LEASNSTLYAKGTAAKR----EVPS 368 (526)
Q Consensus 303 L~~L~L~~~~~~~~lp~~----i~~l-~~L~~L~l~~~~~~~~lp~~----~~~-l~~L~~~L~l~~~~~~~----~~~~ 368 (526)
|++|++++|.+....+.. +..+ ++|++|++++|......+.. +.. .++|+ .|++++|.+.. .++.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~-~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT-SLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC-EEECTTSCGGGSCHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee-EEEccCCcCCHHHHHHHHH
Confidence 777777776644333332 2233 67777777776533322222 222 14666 77777776632 2333
Q ss_pred hhhcccCCcceEEcccCCCCCCCCCCCCCccc--CcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhcc-CCCC
Q 038130 369 SIVGSNNNLYELSLDRSWGGDKQMGLSSPITL--PLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQL-SRLV 445 (526)
Q Consensus 369 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l-~~L~ 445 (526)
.+....++|++|+++. |.... .+.... .+...+++|++|+|++|.++. .....++..+..+ ++|+
T Consensus 161 ~l~~~~~~L~~L~Ls~----n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~-------~~~~~l~~~l~~~~~~L~ 228 (362)
T 3goz_A 161 ILAAIPANVNSLNLRG----NNLAS-KNCAELAKFLASIPASVTSLDLSANLLGL-------KSYAELAYIFSSIPNHVV 228 (362)
T ss_dssp HHHTSCTTCCEEECTT----SCGGG-SCHHHHHHHHHTSCTTCCEEECTTSCGGG-------SCHHHHHHHHHHSCTTCC
T ss_pred HHhcCCccccEeeecC----CCCch-hhHHHHHHHHHhCCCCCCEEECCCCCCCh-------hHHHHHHHHHhcCCCCce
Confidence 3334423677777733 32111 110000 011121377777777776543 1233456556553 4777
Q ss_pred EecccCCccCCcCC--------Ccccccccccccccc-------cc----ccCCCCCCCCEEeccCCCCCC
Q 038130 446 VLNLNYCERLQSLP--------KLPFNLQGIFAHHCT-------AL----SSISYKSSTQLFDLSDNFKLD 497 (526)
Q Consensus 446 ~L~L~~~~~l~~lp--------~~~~~L~~L~l~~c~-------~L----~~l~~~~~L~~L~l~~c~~l~ 497 (526)
.|+|++|. ++..+ ...++|+.|++++|. .+ ..++.+++|+.|++++|+--.
T Consensus 229 ~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 229 SLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp EEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred EEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 77777774 33322 224567777777664 01 234567889999999987433
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=9.7e-15 Score=154.43 Aligned_cols=120 Identities=22% Similarity=0.358 Sum_probs=57.0
Q ss_pred ccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEee
Q 038130 253 HLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNL 332 (526)
Q Consensus 253 ~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 332 (526)
.+++|+.|++++|. +..+|.+..+++|+.|+|++|.+..+|. +..+++|++|+|++|.+ ..+| .+..+++|++|++
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI-KDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC-CCCT-TSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCC-CCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC-CCCh-hhccCCCCCEEEe
Confidence 34555555555432 3444445555555555555555554443 55555555555555442 2233 3455555555555
Q ss_pred cCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEc
Q 038130 333 HGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSL 382 (526)
Q Consensus 333 ~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 382 (526)
++|.. ..+ ..+..+++|+ .|++++|.+ ..+ ..+..+ ++|+.|++
T Consensus 117 s~N~l-~~l-~~l~~l~~L~-~L~Ls~N~l-~~l-~~l~~l-~~L~~L~L 160 (605)
T 1m9s_A 117 EHNGI-SDI-NGLVHLPQLE-SLYLGNNKI-TDI-TVLSRL-TKLDTLSL 160 (605)
T ss_dssp TTSCC-CCC-GGGGGCTTCS-EEECCSSCC-CCC-GGGGSC-TTCSEEEC
T ss_pred cCCCC-CCC-ccccCCCccC-EEECCCCcc-CCc-hhhccc-CCCCEEEC
Confidence 55432 222 2344555555 555555555 223 223333 55555555
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.59 E-value=1.1e-14 Score=133.00 Aligned_cols=167 Identities=21% Similarity=0.206 Sum_probs=113.5
Q ss_pred eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCcccCcc-ccCCCCCCEEeccC
Q 038130 234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYLSD 310 (526)
Q Consensus 234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~ 310 (526)
+.++.++ ..+..+|..+ .++|++|++++|. +..++. +..+.+|++|++++|.++.+|.. +..+++|++|++++
T Consensus 10 ~~v~c~~-~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYS-QGRTSVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCS-SCCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecC-CCccCCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 4556655 4556667544 4688899998875 444443 67888889999998888877765 57888899999988
Q ss_pred CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCC
Q 038130 311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDK 390 (526)
Q Consensus 311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 390 (526)
|.+....+..+..+++|++|++++|......+..+.++++|+ .|++++|.+ ..++......+++|+.|+++.|.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~---- 159 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK-DLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNP---- 159 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSCC-SCCCTTTTTTCTTCCEEECCSCC----
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCC-EEECCCCcc-ceeCHHHhccCCCccEEEecCCC----
Confidence 875544444467888889998888655444444578888888 888888888 45555543333777777774431
Q ss_pred CCCCCCCcccCcccccCcccEEEccCCCCCC
Q 038130 391 QMGLSSPITLPLDGLHTTLTSLYLNYCGILE 421 (526)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 421 (526)
+...+++|+.|+++.|.+++
T Consensus 160 -----------~~~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 160 -----------WDCTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp -----------BCCCTTTTHHHHHHHHHCTT
T ss_pred -----------eecCCCCHHHHHHHHHhCCc
Confidence 11122366777777666554
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.59 E-value=6.3e-17 Score=162.88 Aligned_cols=232 Identities=16% Similarity=0.108 Sum_probs=142.0
Q ss_pred hcCcceEEEeccCCCCCC----CChhccccCCCcEEeeCCCCCC--C-cCCC--------CCCCCcccEEEecccCCcc-
Q 038130 229 IVNTLVILNLSEYVSLNS----LPAEILHLEFLKKLNLLGCSKL--K-RLPE--------FSSSGKIEEIWLDGTAIEE- 292 (526)
Q Consensus 229 ~~~~l~~L~l~~~~~~~~----lp~~~~~l~~L~~L~l~~~~~~--~-~lp~--------~~~l~~L~~L~L~~~~i~~- 292 (526)
..++++.|++++|..... ++..+..+++|++|++++|..- . .+|. +..+++|++|+|++|.++.
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 346688888888644333 2334567888888888886321 1 2231 3577888888888888875
Q ss_pred ----cCccccCCCCCCEEeccCCccCcc----cCcCCCCC---------CCCcEEeecCCCCC-CcCC---CcccCcccc
Q 038130 293 ----LPSSIGCLSRLLYLYLSDCKRLKS----LPSSLSQL---------KSLKLLNLHGCSNL-QRLP---DDFGNLEAS 351 (526)
Q Consensus 293 ----lp~~i~~L~~L~~L~L~~~~~~~~----lp~~i~~l---------~~L~~L~l~~~~~~-~~lp---~~~~~l~~L 351 (526)
+|..+..+++|++|+|++|.+... ++..+..+ ++|++|++++|... ..+| ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 677788888888888888875432 23333334 78888888887654 2344 356667778
Q ss_pred cceeecccccccc-----ccChhhhcccCCcceEEcccCCCCCCCCCCC--CCcccCcccccCcccEEEccCCCCCCCCC
Q 038130 352 NSTLYAKGTAAKR-----EVPSSIVGSNNNLYELSLDRSWGGDKQMGLS--SPITLPLDGLHTTLTSLYLNYCGILELPD 424 (526)
Q Consensus 352 ~~~L~l~~~~~~~-----~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~lp~ 424 (526)
+ .|++++|.+.. .++..+... ++|+.|+++.| .. ... ...+..+... ++|+.|+|++|.++..
T Consensus 190 ~-~L~L~~n~l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n----~l-~~~g~~~l~~~l~~~-~~L~~L~L~~n~i~~~-- 259 (386)
T 2ca6_A 190 H-TVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDN----TF-THLGSSALAIALKSW-PNLRELGLNDCLLSAR-- 259 (386)
T ss_dssp C-EEECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSS----CC-HHHHHHHHHHHGGGC-TTCCEEECTTCCCCHH--
T ss_pred C-EEECcCCCCCHhHHHHHHHHHhhcC-CCccEEECcCC----CC-CcHHHHHHHHHHccC-CCcCEEECCCCCCchh--
Confidence 8 88888887732 222244445 88888888443 21 000 0011112233 3888888888875431
Q ss_pred ccCCCCcccccHHHhc--cCCCCEecccCCccCC----cCCCc----cccccccccccccc
Q 038130 425 SLEKNNFERIPESIIQ--LSRLVVLNLNYCERLQ----SLPKL----PFNLQGIFAHHCTA 475 (526)
Q Consensus 425 ~l~~~~l~~lp~~l~~--l~~L~~L~L~~~~~l~----~lp~~----~~~L~~L~l~~c~~ 475 (526)
....+|.++.. +++|+.|+|++|.... .+|.. +++|+.|++++|+-
T Consensus 260 -----~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 260 -----GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp -----HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred -----hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 12234556643 7778888887775433 25542 36777777777653
No 99
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.57 E-value=5.3e-17 Score=167.42 Aligned_cols=268 Identities=16% Similarity=0.113 Sum_probs=142.8
Q ss_pred cceEEEeccCCCCC----CCChhccccCCCcEEeeCCCCCCCc----CCC--CCCCCcccEEEecccCCcc-----cCcc
Q 038130 232 TLVILNLSEYVSLN----SLPAEILHLEFLKKLNLLGCSKLKR----LPE--FSSSGKIEEIWLDGTAIEE-----LPSS 296 (526)
Q Consensus 232 ~l~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~----lp~--~~~l~~L~~L~L~~~~i~~-----lp~~ 296 (526)
++++|++++|.... .++..+..+++|++|++++|..... +.. .....+|++|++++|.++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 46777777754321 3455666677777777777652211 111 2224456777777666652 3445
Q ss_pred ccCCCCCCEEeccCCccCcccCcCCC-----CCCCCcEEeecCCCCCCc----CCCcccCcccccceeecccccccccc-
Q 038130 297 IGCLSRLLYLYLSDCKRLKSLPSSLS-----QLKSLKLLNLHGCSNLQR----LPDDFGNLEASNSTLYAKGTAAKREV- 366 (526)
Q Consensus 297 i~~L~~L~~L~L~~~~~~~~lp~~i~-----~l~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~~L~l~~~~~~~~~- 366 (526)
+..+++|++|++++|.+....+..+. ..++|++|++++|..... ++..+..+++|+ .|++++|.+....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~-~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR-ELALGSNKLGDVGM 244 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC-EEECCSSBCHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc-EEeccCCcCChHHH
Confidence 56666777777776654332222221 244666666666543321 344455555666 6666666552221
Q ss_pred ---ChhhhcccCCcceEEcccCCCCCCCCCCCCC--cccCcccccCcccEEEccCCCCCCC-------------CCc---
Q 038130 367 ---PSSIVGSNNNLYELSLDRSWGGDKQMGLSSP--ITLPLDGLHTTLTSLYLNYCGILEL-------------PDS--- 425 (526)
Q Consensus 367 ---~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~l-------------p~~--- 425 (526)
...+...+++|+.|+++ +|.. ...+. ....+... ++|++|++++|.+... |..
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~----~n~l-~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIW----ECGI-TAKGCGDLCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECT----TSCC-CHHHHHHHHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred HHHHHHHhcCCCCceEEECc----CCCC-CHHHHHHHHHHHhhC-CCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 12222222566666662 2210 00000 00001111 2455555555544310 000
Q ss_pred -cCCCCcc-----cccHHHhccCCCCEecccCCccCCcCC--------Cccccccccccccccccc----cCC----CCC
Q 038130 426 -LEKNNFE-----RIPESIIQLSRLVVLNLNYCERLQSLP--------KLPFNLQGIFAHHCTALS----SIS----YKS 483 (526)
Q Consensus 426 -l~~~~l~-----~lp~~l~~l~~L~~L~L~~~~~l~~lp--------~~~~~L~~L~l~~c~~L~----~l~----~~~ 483 (526)
+++|.++ .+|.++..+++|+.|++++|..-..-+ ...++|+.|++++|.--. .++ .++
T Consensus 319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence 3334443 467788889999999999995322111 124589999999985322 332 489
Q ss_pred CCCEEeccCCCCCCHHHHHHHHHH
Q 038130 484 STQLFDLSDNFKLDRNAVRIIVED 507 (526)
Q Consensus 484 ~L~~L~l~~c~~l~~~~~~~~~~~ 507 (526)
+|++|++++| .++..+...+.+.
T Consensus 399 ~L~~L~l~~N-~i~~~~~~~l~~~ 421 (461)
T 1z7x_W 399 SLRELDLSNN-CLGDAGILQLVES 421 (461)
T ss_dssp CCCEEECCSS-SCCHHHHHHHHHH
T ss_pred CccEEECCCC-CCCHHHHHHHHHH
Confidence 9999999999 5777777666543
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=1.1e-14 Score=131.80 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=123.3
Q ss_pred ccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEE
Q 038130 251 ILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLL 330 (526)
Q Consensus 251 ~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 330 (526)
...+++|++|++++|. +..+|.+..+++|++|++++|.++.++ .+..+++|++|++++|.+....|..++.+++|++|
T Consensus 40 ~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 40 EAQMNSLTYITLANIN-VTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHHTCCEEEEESSC-CSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhhcCCccEEeccCCC-ccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3668999999999965 667888899999999999999887765 68999999999999998777788889999999999
Q ss_pred eecCCCCCCcCCCcccCcccccceeeccccc-cccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcc
Q 038130 331 NLHGCSNLQRLPDDFGNLEASNSTLYAKGTA-AKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTL 409 (526)
Q Consensus 331 ~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 409 (526)
++++|......|..++.+++|+ .|++++|. + +.++ .+..+ ++|+.|+++. |...... .+..++ +|
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~-~L~L~~n~~i-~~~~-~l~~l-~~L~~L~l~~----n~i~~~~-----~l~~l~-~L 183 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVN-SIDLSYNGAI-TDIM-PLKTL-PELKSLNIQF----DGVHDYR-----GIEDFP-KL 183 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCC-EEECCSCTBC-CCCG-GGGGC-SSCCEEECTT----BCCCCCT-----TGGGCS-SC
T ss_pred EecCCccCcHhHHHHhhCCCCC-EEEccCCCCc-cccH-hhcCC-CCCCEEECCC----CCCcChH-----HhccCC-CC
Confidence 9999877666778899999999 99999998 6 7776 46566 9999999944 3322111 233444 89
Q ss_pred cEEEccCCCCC
Q 038130 410 TSLYLNYCGIL 420 (526)
Q Consensus 410 ~~L~L~~~~~~ 420 (526)
+.|++++|.+.
T Consensus 184 ~~L~l~~N~i~ 194 (197)
T 4ezg_A 184 NQLYAFSQTIG 194 (197)
T ss_dssp CEEEECBC---
T ss_pred CEEEeeCcccC
Confidence 99999998764
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.55 E-value=4e-14 Score=140.91 Aligned_cols=145 Identities=21% Similarity=0.240 Sum_probs=105.6
Q ss_pred eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-C-CC-CCCcccEEEecccCCcccCc-cccCCCCCCEEecc
Q 038130 234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-E-FS-SSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLS 309 (526)
Q Consensus 234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~-~~-~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~ 309 (526)
+++++++ ..+..+|..+. +.+++|+|++|. +..++ . +. .+.+|++|+|++|.|+.++. .+.++++|++|+|+
T Consensus 21 ~~l~c~~-~~l~~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSK-QQLPNVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCS-SCCSSCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCC-CCcCccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 5677777 56677776553 568888888875 44444 3 54 78888888888888887764 58888888888888
Q ss_pred CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhh---cccCCcceEEccc
Q 038130 310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIV---GSNNNLYELSLDR 384 (526)
Q Consensus 310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~l~~ 384 (526)
+|.+....+..+..+++|++|++++|......|..+.++++|+ .|++++|.+ ..+|..++ ..+++|+.|+++.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~-~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ-KLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC-EEECCSSCC-CSCCGGGTC----CTTCCEEECCS
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCC-EEECCCCcC-CeeCHHHhcCcccCCcCCEEECCC
Confidence 8875554555678888888888888766555567788888888 888888888 66776654 2236677777643
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.55 E-value=7.5e-14 Score=127.49 Aligned_cols=179 Identities=16% Similarity=0.149 Sum_probs=121.7
Q ss_pred cEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCcc-ccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCC
Q 038130 258 KKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCS 336 (526)
Q Consensus 258 ~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~ 336 (526)
+.++.+++ .+..+|. .-..++++|++++|.++.+|.. ++.+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 10 ~~v~c~~~-~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQ-GRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSS-CCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCC-CccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 56666664 3555663 1235789999999999877764 6889999999999987554444456789999999999876
Q ss_pred CCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEccC
Q 038130 337 NLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNY 416 (526)
Q Consensus 337 ~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 416 (526)
.....+..+.++++|+ .|++++|.+ ..++...+..+++|+.|+++.| ..... ....+..+ ++|+.|++++
T Consensus 88 l~~~~~~~~~~l~~L~-~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N----~l~~~---~~~~~~~l-~~L~~L~l~~ 157 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLK-ELALNTNQL-QSLPDGVFDKLTQLKDLRLYQN----QLKSV---PDGVFDRL-TSLQYIWLHD 157 (208)
T ss_dssp CCCCCTTTTTTCTTCC-EEECCSSCC-CCCCTTTTTTCTTCCEEECCSS----CCSCC---CTTTTTTC-TTCCEEECCS
T ss_pred CCccCHhHhcCccCCC-EEEcCCCcC-cccCHhHhccCCcCCEEECCCC----cccee---CHHHhccC-CCccEEEecC
Confidence 5444444578899999 999999988 5666654444488888888543 21111 11112233 3888888888
Q ss_pred CCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCCCcccccc
Q 038130 417 CGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLPKLPFNLQ 466 (526)
Q Consensus 417 ~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~ 466 (526)
|.+. +.+++|+.|+++.|...+.+|..+.++.
T Consensus 158 N~~~------------------~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 158 NPWD------------------CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp CCBC------------------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CCee------------------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 8643 2456777777777777777776544443
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.55 E-value=6.4e-14 Score=129.10 Aligned_cols=145 Identities=25% Similarity=0.299 Sum_probs=86.4
Q ss_pred eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC--CCCCCCcccEEEecccCCccc-CccccCCCCCCEEeccC
Q 038130 234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP--EFSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLYLSD 310 (526)
Q Consensus 234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~ 310 (526)
+.++.++ ..+..+|..+. +.|+.|++++|. +..++ .+..+.+|++|+|++|.++.+ |..+.++++|++|+|++
T Consensus 14 ~~v~c~~-~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRG-KGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTT-SCCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCC-CCcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 4555555 45566665443 567777777754 33333 366677777777777777655 55677777777777777
Q ss_pred CccCcccCcC-CCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccC
Q 038130 311 CKRLKSLPSS-LSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRS 385 (526)
Q Consensus 311 ~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 385 (526)
|.+. .+|.. +..+++|++|++++|......|..+..+++|+ .|++++|.+ ..++...+..+++|+.|++..|
T Consensus 90 N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 90 NKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN-LLSLYDNKL-QTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSCC-SCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCC-EEECCCCcC-CEECHHHHhCCCCCCEEEeCCC
Confidence 6643 34433 46677777777777655554555666777777 777777766 4444332222255555555433
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=9.2e-14 Score=128.94 Aligned_cols=147 Identities=20% Similarity=0.199 Sum_probs=102.4
Q ss_pred ceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCcc-ccCCCCCCEEeccC
Q 038130 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYLSD 310 (526)
Q Consensus 233 l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~ 310 (526)
.+.++.++ ..+..+|..+. ++|++|++++|......|. +..+.+|++|+|++|.++.+|.. +..+++|++|+|++
T Consensus 21 ~~~v~c~~-~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRS-KRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTT-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccC-CCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 45677766 56677776553 7888888888764444443 77788888888888888877754 57888888888888
Q ss_pred CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccC
Q 038130 311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRS 385 (526)
Q Consensus 311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 385 (526)
|.+....+..+..+++|++|++++|. +..+|..+..+++|+ .|++++|.+ ..++...+..+++|+.|++..|
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~-~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLT-HLALDQNQL-KSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCS-EEECCSSCC-CCCCTTTTTTCTTCCEEECTTS
T ss_pred CcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCC-EEECCCCcC-CccCHHHHhCCCCCCEEEeeCC
Confidence 87554444446778888888888754 457777788888888 888888887 5555443333366666666444
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=7.5e-14 Score=128.64 Aligned_cols=149 Identities=21% Similarity=0.255 Sum_probs=105.7
Q ss_pred cEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCc-cccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCC
Q 038130 258 KKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGC 335 (526)
Q Consensus 258 ~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~ 335 (526)
+.++++++ .++.+|. +. .+++.|++++|.|+.+|. .+..+++|++|+|++|.+....|..+..+++|++|++++|
T Consensus 14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 67888774 4666775 33 678999999999987766 6888999999999998877767888889999999999986
Q ss_pred CCCCcCCC-cccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEc
Q 038130 336 SNLQRLPD-DFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYL 414 (526)
Q Consensus 336 ~~~~~lp~-~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 414 (526)
.. ..+|. .+.++++|+ .|++++|.+.+..+..+..+ ++|+.|+++.| ...... ...+..+ ++|+.|++
T Consensus 91 ~l-~~l~~~~f~~l~~L~-~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N----~l~~~~---~~~~~~l-~~L~~L~L 159 (220)
T 2v9t_B 91 KI-TELPKSLFEGLFSLQ-LLLLNANKINCLRVDAFQDL-HNLNLLSLYDN----KLQTIA---KGTFSPL-RAIQTMHL 159 (220)
T ss_dssp CC-CCCCTTTTTTCTTCC-EEECCSSCCCCCCTTTTTTC-TTCCEEECCSS----CCSCCC---TTTTTTC-TTCCEEEC
T ss_pred cC-CccCHhHccCCCCCC-EEECCCCCCCEeCHHHcCCC-CCCCEEECCCC----cCCEEC---HHHHhCC-CCCCEEEe
Confidence 54 45554 468888898 99999998844444445444 88888888444 211111 1112233 37788888
Q ss_pred cCCCCC
Q 038130 415 NYCGIL 420 (526)
Q Consensus 415 ~~~~~~ 420 (526)
++|.+.
T Consensus 160 ~~N~~~ 165 (220)
T 2v9t_B 160 AQNPFI 165 (220)
T ss_dssp CSSCEE
T ss_pred CCCCcC
Confidence 877654
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.54 E-value=5.1e-14 Score=129.80 Aligned_cols=145 Identities=18% Similarity=0.157 Sum_probs=85.2
Q ss_pred eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCcccCc-cccCCCCCCEEeccC
Q 038130 234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLSD 310 (526)
Q Consensus 234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~ 310 (526)
+.+++++ +.+..+|..+ ...+++|++++|......+. +..+++|++|++++|.|+.++. .++++++|++|+|++
T Consensus 14 ~~l~~s~-n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSN-QKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCS-SCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCC-CCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4566666 3455566544 23456777776543322232 5666677777777777765554 566677777777777
Q ss_pred CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcc
Q 038130 311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLD 383 (526)
Q Consensus 311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~ 383 (526)
|.+.+..|..+..+++|++|++++|......|..+.++++|+ .|++++|.+.+..|..+..+ ++|+.|+++
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~ 161 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR-LLSLYDNQITTVAPGAFDTL-HSLSTLNLL 161 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS-EEECTTSCCCCBCTTTTTTC-TTCCEEECC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC-EEECCCCcCCEECHHHhcCC-CCCCEEEec
Confidence 665444444566677777777776655555556666666666 67777766633334444333 555555553
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=6.3e-14 Score=135.05 Aligned_cols=171 Identities=22% Similarity=0.270 Sum_probs=135.8
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccC
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSD 310 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 310 (526)
..++.|++++| .+..++. +..+++|++|++++|. +..++.+..+++|++|++++|.++.+|. ++.+++|++|++++
T Consensus 46 ~~L~~L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 46 NSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEH 121 (291)
T ss_dssp HTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTT
T ss_pred CcccEEEccCC-CcccChh-HhcCCCCCEEEccCCc-cCCCcccccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCC
Confidence 57899999995 5566665 8889999999999975 5556669999999999999999998775 99999999999999
Q ss_pred CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCC
Q 038130 311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDK 390 (526)
Q Consensus 311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 390 (526)
|.+. .++ .+..+++|++|++++|.. ..+ ..++.+++|+ .|++++|.+ ..++. +..+ ++|+.|+++.| .
T Consensus 122 n~i~-~~~-~l~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~-~L~L~~N~l-~~~~~-l~~l-~~L~~L~L~~N----~ 189 (291)
T 1h6t_A 122 NGIS-DIN-GLVHLPQLESLYLGNNKI-TDI-TVLSRLTKLD-TLSLEDNQI-SDIVP-LAGL-TKLQNLYLSKN----H 189 (291)
T ss_dssp SCCC-CCG-GGGGCTTCCEEECCSSCC-CCC-GGGGGCTTCS-EEECCSSCC-CCCGG-GTTC-TTCCEEECCSS----C
T ss_pred CcCC-CCh-hhcCCCCCCEEEccCCcC-Ccc-hhhccCCCCC-EEEccCCcc-ccchh-hcCC-CccCEEECCCC----c
Confidence 9754 454 588999999999999754 444 5789999999 999999999 55555 5555 99999999544 2
Q ss_pred CCCCCCCcccCcccccCcccEEEccCCCCCCCC
Q 038130 391 QMGLSSPITLPLDGLHTTLTSLYLNYCGILELP 423 (526)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp 423 (526)
.... + .+..+. +|+.|++++|.++..|
T Consensus 190 i~~l----~-~l~~l~-~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 190 ISDL----R-ALAGLK-NLDVLELFSQECLNKP 216 (291)
T ss_dssp CCBC----G-GGTTCT-TCSEEEEEEEEEECCC
T ss_pred CCCC----h-hhccCC-CCCEEECcCCcccCCc
Confidence 1111 1 133444 9999999999876643
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.50 E-value=4.7e-13 Score=140.08 Aligned_cols=164 Identities=22% Similarity=0.269 Sum_probs=120.7
Q ss_pred CCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeec
Q 038130 255 EFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLH 333 (526)
Q Consensus 255 ~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~ 333 (526)
.+|++|++++|. +..+|. + .++|++|++++|.|+.+| +.+++|++|++++|.+.+ +|. +.. +|++|+++
T Consensus 59 ~~L~~L~Ls~n~-L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSC-CSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCC-CCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 389999999975 556776 4 378999999999999999 568999999999997554 888 665 99999999
Q ss_pred CCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEE
Q 038130 334 GCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLY 413 (526)
Q Consensus 334 ~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 413 (526)
+|. +..+|. .+++|+ .|++++|.+ ..+|. .+++|+.|+++.| .... .+. +. ++|+.|+
T Consensus 129 ~N~-l~~lp~---~l~~L~-~L~Ls~N~l-~~lp~----~l~~L~~L~Ls~N----~L~~-lp~----l~---~~L~~L~ 186 (571)
T 3cvr_A 129 NNQ-LTMLPE---LPALLE-YINADNNQL-TMLPE----LPTSLEVLSVRNN----QLTF-LPE----LP---ESLEALD 186 (571)
T ss_dssp SSC-CSCCCC---CCTTCC-EEECCSSCC-SCCCC----CCTTCCEEECCSS----CCSC-CCC----CC---TTCCEEE
T ss_pred CCc-CCCCCC---cCcccc-EEeCCCCcc-CcCCC----cCCCcCEEECCCC----CCCC-cch----hh---CCCCEEE
Confidence 975 455777 678888 999999999 55776 3489999999544 2111 111 11 5999999
Q ss_pred ccCCCCCCCCCccCCCCcccccHHH-hccCCCCEecccCCccCCcCCC
Q 038130 414 LNYCGILELPDSLEKNNFERIPESI-IQLSRLVVLNLNYCERLQSLPK 460 (526)
Q Consensus 414 L~~~~~~~lp~~l~~~~l~~lp~~l-~~l~~L~~L~L~~~~~l~~lp~ 460 (526)
|++|.++.+|. ++..+ ...+.|+.|++++| .+..+|.
T Consensus 187 Ls~N~L~~lp~---------~~~~L~~~~~~L~~L~Ls~N-~l~~lp~ 224 (571)
T 3cvr_A 187 VSTNLLESLPA---------VPVRNHHSEETEIFFRCREN-RITHIPE 224 (571)
T ss_dssp CCSSCCSSCCC---------CC--------CCEEEECCSS-CCCCCCG
T ss_pred CcCCCCCchhh---------HHHhhhcccccceEEecCCC-cceecCH
Confidence 99998877763 12111 22344599999998 4556664
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.50 E-value=1.2e-13 Score=146.21 Aligned_cols=172 Identities=23% Similarity=0.271 Sum_probs=135.1
Q ss_pred cCcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEecc
Q 038130 230 VNTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLS 309 (526)
Q Consensus 230 ~~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 309 (526)
...++.|++++| .+..++. +..+++|+.|+|++|. +..++.+..+++|+.|+|++|.+..+| .+..+++|++|+|+
T Consensus 42 L~~L~~L~l~~n-~i~~l~~-l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 42 LNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGNK-LTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp HTTCCCCBCTTC-CCCCCTT-GGGCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECT
T ss_pred CCCCCEEECcCC-CCCCChH-HccCCCCCEEEeeCCC-CCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEec
Confidence 357888999985 4666764 8889999999999975 555666899999999999999999877 69999999999999
Q ss_pred CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCC
Q 038130 310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGD 389 (526)
Q Consensus 310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 389 (526)
+|.+. .+| .+..+++|+.|+|++|.. ..+ ..+..+++|+ .|++++|.+ ..++. +..+ ++|+.|+++.|
T Consensus 118 ~N~l~-~l~-~l~~l~~L~~L~Ls~N~l-~~l-~~l~~l~~L~-~L~Ls~N~l-~~~~~-l~~l-~~L~~L~Ls~N---- 185 (605)
T 1m9s_A 118 HNGIS-DIN-GLVHLPQLESLYLGNNKI-TDI-TVLSRLTKLD-TLSLEDNQI-SDIVP-LAGL-TKLQNLYLSKN---- 185 (605)
T ss_dssp TSCCC-CCG-GGGGCTTCSEEECCSSCC-CCC-GGGGSCTTCS-EEECCSSCC-CCCGG-GTTC-TTCCEEECCSS----
T ss_pred CCCCC-CCc-cccCCCccCEEECCCCcc-CCc-hhhcccCCCC-EEECcCCcC-CCchh-hccC-CCCCEEECcCC----
Confidence 98754 454 488999999999999754 444 5688999999 999999999 44444 5555 99999999543
Q ss_pred CCCCCCCCcccCcccccCcccEEEccCCCCCCCC
Q 038130 390 KQMGLSSPITLPLDGLHTTLTSLYLNYCGILELP 423 (526)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp 423 (526)
..... ..+..+. +|+.|+|++|.+...|
T Consensus 186 ~i~~l-----~~l~~l~-~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 186 HISDL-----RALAGLK-NLDVLELFSQECLNKP 213 (605)
T ss_dssp CCCBC-----GGGTTCT-TCSEEECCSEEEECCC
T ss_pred CCCCC-----hHHccCC-CCCEEEccCCcCcCCc
Confidence 22111 1233444 9999999999887755
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.49 E-value=3.9e-13 Score=124.66 Aligned_cols=151 Identities=21% Similarity=0.227 Sum_probs=104.5
Q ss_pred CcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCccc-CccccCCCCCCEEeccCCccCcccC-cCCCCCCCCcEEeecC
Q 038130 257 LKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLYLSDCKRLKSLP-SSLSQLKSLKLLNLHG 334 (526)
Q Consensus 257 L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~ 334 (526)
-+.++.+++ .+..+|.- -..+|++|++++|.+..+ |..++.+++|++|+|++|.+ ..+| ..+..+++|++|++++
T Consensus 21 ~~~v~c~~~-~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTS-CCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCC-CcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence 466788774 46667751 127789999999988866 56688889999999998875 4454 4467889999999988
Q ss_pred CCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEc
Q 038130 335 CSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYL 414 (526)
Q Consensus 335 ~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 414 (526)
|......+..+..+++|+ .|++++|.+ ..+|..+..+ ++|+.|+++.| ..... ....+..+. +|+.|++
T Consensus 98 N~l~~l~~~~~~~l~~L~-~L~Ls~N~l-~~lp~~~~~l-~~L~~L~L~~N----~l~~~---~~~~~~~l~-~L~~L~l 166 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLK-ELFMCCNKL-TELPRGIERL-THLTHLALDQN----QLKSI---PHGAFDRLS-SLTHAYL 166 (229)
T ss_dssp SCCCCCCTTTTTTCTTCC-EEECCSSCC-CSCCTTGGGC-TTCSEEECCSS----CCCCC---CTTTTTTCT-TCCEEEC
T ss_pred CcCCccChhHhCcchhhC-eEeccCCcc-cccCcccccC-CCCCEEECCCC----cCCcc---CHHHHhCCC-CCCEEEe
Confidence 755444344578888888 899999988 6888877666 88888888443 11111 111122333 7778887
Q ss_pred cCCCCCC
Q 038130 415 NYCGILE 421 (526)
Q Consensus 415 ~~~~~~~ 421 (526)
++|.+..
T Consensus 167 ~~N~~~c 173 (229)
T 3e6j_A 167 FGNPWDC 173 (229)
T ss_dssp TTSCBCT
T ss_pred eCCCccC
Confidence 7776543
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=3.9e-13 Score=123.85 Aligned_cols=151 Identities=18% Similarity=0.169 Sum_probs=108.7
Q ss_pred cEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCc--cccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecC
Q 038130 258 KKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPS--SIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHG 334 (526)
Q Consensus 258 ~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~ 334 (526)
++++++++. ++.+|. +. ..+++|++++|.++.++. .++.+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 14 ~~l~~s~n~-l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCC-cccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 688998854 666775 32 346899999999997743 478999999999999886665666789999999999999
Q ss_pred CCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEEEc
Q 038130 335 CSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYL 414 (526)
Q Consensus 335 ~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 414 (526)
|......|..+.++++|+ .|++++|.+.+..|..+..+ ++|+.|+++.| . .....+..+..+. +|+.|++
T Consensus 91 N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N----~---l~~~~~~~~~~l~-~L~~L~L 160 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLK-TLMLRSNRITCVGNDSFIGL-SSVRLLSLYDN----Q---ITTVAPGAFDTLH-SLSTLNL 160 (220)
T ss_dssp SCCCCCCGGGGTTCSSCC-EEECTTSCCCCBCTTSSTTC-TTCSEEECTTS----C---CCCBCTTTTTTCT-TCCEEEC
T ss_pred CccCccCHhHhcCCcCCC-EEECCCCcCCeECHhHcCCC-ccCCEEECCCC----c---CCEECHHHhcCCC-CCCEEEe
Confidence 766555555688899999 99999999955445556555 88888888444 2 1111112233333 7888888
Q ss_pred cCCCCCC
Q 038130 415 NYCGILE 421 (526)
Q Consensus 415 ~~~~~~~ 421 (526)
++|.+..
T Consensus 161 ~~N~l~c 167 (220)
T 2v70_A 161 LANPFNC 167 (220)
T ss_dssp CSCCEEC
T ss_pred cCcCCcC
Confidence 8887643
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=1e-13 Score=131.50 Aligned_cols=167 Identities=18% Similarity=0.166 Sum_probs=119.0
Q ss_pred eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCcc
Q 038130 234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKR 313 (526)
Q Consensus 234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~ 313 (526)
..+++++ ..+..++ .+..+++|++|++++| .+..+|.+..+++|++|++++|.++.+|. ++.+++|++|++++|.+
T Consensus 22 ~~l~l~~-~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 22 VKQNLGK-QSVTDLV-SQKELSGVQNFNGDNS-NIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRL 97 (263)
T ss_dssp HHHHHTC-SCTTSEE-CHHHHTTCSEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCC
T ss_pred HHHHhcC-CCccccc-chhhcCcCcEEECcCC-CcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCcc
Confidence 3444555 3445555 3677889999999986 46677888888899999999999988877 88899999999998874
Q ss_pred CcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCC
Q 038130 314 LKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMG 393 (526)
Q Consensus 314 ~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 393 (526)
..+|. +.. ++|++|++++|. +..++ .+.++++|+ .|++++|.+ ..++ .+..+ ++|+.|+++.| ....
T Consensus 98 -~~l~~-~~~-~~L~~L~L~~N~-l~~~~-~l~~l~~L~-~L~Ls~N~i-~~~~-~l~~l-~~L~~L~L~~N----~i~~ 164 (263)
T 1xeu_A 98 -KNLNG-IPS-ACLSRLFLDNNE-LRDTD-SLIHLKNLE-ILSIRNNKL-KSIV-MLGFL-SKLEVLDLHGN----EITN 164 (263)
T ss_dssp -SCCTT-CCC-SSCCEEECCSSC-CSBSG-GGTTCTTCC-EEECTTSCC-CBCG-GGGGC-TTCCEEECTTS----CCCB
T ss_pred -CCcCc-ccc-CcccEEEccCCc-cCCCh-hhcCccccc-EEECCCCcC-CCCh-HHccC-CCCCEEECCCC----cCcc
Confidence 44665 333 889999999864 44454 588888888 999999988 5555 45555 88888888443 2111
Q ss_pred CCCCcccCcccccCcccEEEccCCCCCCCC
Q 038130 394 LSSPITLPLDGLHTTLTSLYLNYCGILELP 423 (526)
Q Consensus 394 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp 423 (526)
. ..+..+. +|+.|++++|.+...|
T Consensus 165 ~-----~~l~~l~-~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 165 T-----GGLTRLK-KVNWIDLTGQKCVNEP 188 (263)
T ss_dssp C-----TTSTTCC-CCCEEEEEEEEEECCC
T ss_pred h-----HHhccCC-CCCEEeCCCCcccCCc
Confidence 1 1133333 8888888888766543
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=7.8e-15 Score=146.16 Aligned_cols=231 Identities=14% Similarity=0.115 Sum_probs=156.2
Q ss_pred EEeeCCCCCCCcCCCCC-CCCcccEEEecccCCcccC-----ccccCCC-CCCEEeccCCccCcccCcCCCCC-----CC
Q 038130 259 KLNLLGCSKLKRLPEFS-SSGKIEEIWLDGTAIEELP-----SSIGCLS-RLLYLYLSDCKRLKSLPSSLSQL-----KS 326 (526)
Q Consensus 259 ~L~l~~~~~~~~lp~~~-~l~~L~~L~L~~~~i~~lp-----~~i~~L~-~L~~L~L~~~~~~~~lp~~i~~l-----~~ 326 (526)
+++++++.....+|.+. ...+|++|++++|.++..+ ..+..++ +|++|++++|.+....+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45777776555667644 4455999999999999776 5678888 99999999998666556555554 99
Q ss_pred CcEEeecCCCCCCcCCCcc----cCc-ccccceeeccccccccccChhhhcc----cCCcceEEcccCCCCCCCCCCCCC
Q 038130 327 LKLLNLHGCSNLQRLPDDF----GNL-EASNSTLYAKGTAAKREVPSSIVGS----NNNLYELSLDRSWGGDKQMGLSSP 397 (526)
Q Consensus 327 L~~L~l~~~~~~~~lp~~~----~~l-~~L~~~L~l~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~~~~ 397 (526)
|++|++++|......+..+ ..+ ++|+ .|++++|.+....+..+... +++|++|+++.| ... ..+.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~-~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N----~l~-~~~~ 155 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTIT-VLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN----DLG-IKSS 155 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCC-EEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS----CGG-GSCH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCcc-EEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC----cCC-HHHH
Confidence 9999999987554444433 334 7899 99999999944444343322 369999999544 211 1110
Q ss_pred ccc--CcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhcc-CCCCEecccCCccCCc-----CCC----ccccc
Q 038130 398 ITL--PLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQL-SRLVVLNLNYCERLQS-----LPK----LPFNL 465 (526)
Q Consensus 398 ~~~--~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l-~~L~~L~L~~~~~l~~-----lp~----~~~~L 465 (526)
... .+....++|++|++++|.+++. ....+...+..+ ++|+.|+|++|. ++. ++. ..++|
T Consensus 156 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~-------~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L 227 (362)
T 3goz_A 156 DELIQILAAIPANVNSLNLRGNNLASK-------NCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHV 227 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECTTSCGGGS-------CHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTC
T ss_pred HHHHHHHhcCCccccEeeecCCCCchh-------hHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCc
Confidence 000 0122334999999999987552 122333455566 599999999995 444 343 23589
Q ss_pred ccccccccccccc---------CCCCCCCCEEeccCCC--CCCHHHHHHH
Q 038130 466 QGIFAHHCTALSS---------ISYKSSTQLFDLSDNF--KLDRNAVRII 504 (526)
Q Consensus 466 ~~L~l~~c~~L~~---------l~~~~~L~~L~l~~c~--~l~~~~~~~~ 504 (526)
+.|+++++. +.. +..+++|+.|++++|. .+.......+
T Consensus 228 ~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l 276 (362)
T 3goz_A 228 VSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL 276 (362)
T ss_dssp CEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred eEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence 999999874 222 2357899999999996 4555554443
No 114
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.44 E-value=3.9e-16 Score=180.53 Aligned_cols=150 Identities=11% Similarity=0.020 Sum_probs=118.4
Q ss_pred ecccccccCchHHHHHHHHHhCCCceEeeCCcCCCccchHHHHHHhhhceEEEEecCCccchhhcHHHHHHHHHHHhhCC
Q 038130 19 SFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYIIFSESDASSSWCLDELLKIVECRTNYG 98 (526)
Q Consensus 19 s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~I~~kc~GlPLa~~~~g~~l~~~~~~~~w~~i~~~~~~~~ 98 (526)
.+..+|+|++|...++. ..+++ ++++++|+++|+|+|||++++|.+++.+. .+|...++......
T Consensus 285 ~l~~~~a~~l~~~~~~~----------~~~~~---~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~ 349 (1249)
T 3sfz_A 285 GLGREKGLEILSLFVNM----------KKEDL---PAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQ 349 (1249)
T ss_dssp SCCHHHHHHHHHHHHTS----------CSTTC---CTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHhhCC----------ChhhC---cHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhh
Confidence 37889999999887632 11233 78899999999999999999999998765 46888887663221
Q ss_pred ---------------CeEEEEEeeccchhhhhccccHHHHHHHHHhhchhhhhcCCceEEeehhhccccchHHHHHHHHh
Q 038130 99 ---------------QIVVAVCYRVEPSHVRKQIGSFEDSFSKLEERFPDKMQTGKKHICLDVAYFLKEERSDMVLSFLD 163 (526)
Q Consensus 99 ---------------~~il~~sY~~Lp~~lk~~cf~y~~~Fp~d~~i~~~~~~~~~~Li~lwiAegf~~~~~~~~~~~~~ 163 (526)
..++.+||+.||.+.| .||.||++||+++.| +++.++.+|.+++ +.+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~-~~~~~l~~f~~~~~i------~~~~~~~~~~~~~----------~~~~ 412 (1249)
T 3sfz_A 350 FKRIRKSSSYDYEALDEAMSISVEMLREDIK-DYYTDLSILQKDVKV------PTKVLCVLWDLET----------EEVE 412 (1249)
T ss_dssp CCCSSCTTCTTHHHHHHHHHHHHHTSCTTTH-HHHHHGGGSCTTCCE------EHHHHHHHHTCCH----------HHHH
T ss_pred hhhcccccccchHHHHHHHHHHHHhCCHHHH-HHHHHhCccCCCCee------CHHHHHHHhCCCH----------HHHH
Confidence 1134459999999999 899999999999999 7778999998773 2233
Q ss_pred hCCCCcccchHHHhhccceeeecCC---eEEechhHHHHHHHHHHhh
Q 038130 164 ACGFFAGIGLPVLVNRCLITVSHSN---TITMHDSLGDMEREIVQKE 207 (526)
Q Consensus 164 ~~~~~~~~~~~~Li~~sl~~~~~~~---~~~mhdl~~dla~~i~~~e 207 (526)
++ +++|+++||++....+ .|+|||++|++++..+.++
T Consensus 413 ~~-------l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 413 DI-------LQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HH-------HHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HH-------HHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 33 8999999999977655 4999999999999886554
No 115
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.43 E-value=3.2e-14 Score=151.37 Aligned_cols=81 Identities=12% Similarity=0.030 Sum_probs=33.9
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCc----CCCCCCCCcccEEEecccCCcccCccccCCCCCCEE
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKR----LPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYL 306 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~----lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 306 (526)
++++.|++++|. +..+|..+..+++|+.|+++++..... ...+..+.+|+.|+++++....+|..+..+++|++|
T Consensus 220 ~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 220 RSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL 298 (592)
T ss_dssp TTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEE
T ss_pred CCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEE
Confidence 444555555432 222344444444444444443211100 112334444444444444333444444445555555
Q ss_pred eccCCc
Q 038130 307 YLSDCK 312 (526)
Q Consensus 307 ~L~~~~ 312 (526)
++++|.
T Consensus 299 ~Ls~~~ 304 (592)
T 3ogk_B 299 DLLYAL 304 (592)
T ss_dssp EETTCC
T ss_pred ecCCCc
Confidence 555544
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.43 E-value=4.8e-14 Score=152.80 Aligned_cols=123 Identities=23% Similarity=0.307 Sum_probs=95.0
Q ss_pred CCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCC
Q 038130 246 SLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQL 324 (526)
Q Consensus 246 ~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l 324 (526)
..+..+..++.|++|+|++|. +..+| .+..+.+|++|+|++|.|+.+|..|++|++|++|+|++|.+. .+|..++.|
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 456667788889999998876 44666 467888889999998888888888888999999999988754 788888888
Q ss_pred CCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhc
Q 038130 325 KSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVG 372 (526)
Q Consensus 325 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~ 372 (526)
++|++|+|++|. ++.+|..|++|++|+ .|++++|.+.+.+|..+..
T Consensus 293 ~~L~~L~L~~N~-l~~lp~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 293 FQLKYFYFFDNM-VTTLPWEFGNLCNLQ-FLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp TTCSEEECCSSC-CCCCCSSTTSCTTCC-CEECTTSCCCSHHHHHHHH
T ss_pred CCCCEEECCCCC-CCccChhhhcCCCcc-EEeCCCCccCCCChHHHhh
Confidence 999999998864 567888888888888 8999998886666666544
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.43 E-value=2.9e-13 Score=119.01 Aligned_cols=133 Identities=24% Similarity=0.258 Sum_probs=83.8
Q ss_pred CcceEEEeccCCCC-CCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcc-cCccccCCCCCCEEec
Q 038130 231 NTLVILNLSEYVSL-NSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEE-LPSSIGCLSRLLYLYL 308 (526)
Q Consensus 231 ~~l~~L~l~~~~~~-~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~L 308 (526)
..++.|++++|... ..+|..+..+++|++|++++|. +..++.+..+++|++|++++|.+.. +|..++.+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 45677777775433 3666666677777777777765 4444556677777777777777765 5655666777777777
Q ss_pred cCCccCcccC--cCCCCCCCCcEEeecCCCCCCcCCC----cccCcccccceeeccccccccccCh
Q 038130 309 SDCKRLKSLP--SSLSQLKSLKLLNLHGCSNLQRLPD----DFGNLEASNSTLYAKGTAAKREVPS 368 (526)
Q Consensus 309 ~~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~~L~l~~~~~~~~~~~ 368 (526)
++|.+ ..+| ..+..+++|++|++++|. +..+|. .+..+++|+ .|++++|.+ ..+|.
T Consensus 103 s~N~l-~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~-~L~l~~n~~-~~~~~ 164 (168)
T 2ell_A 103 SGNKL-KDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLT-YLDGYDRED-QEAPD 164 (168)
T ss_dssp BSSSC-CSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCC-EETTEETTS-CBCCS
T ss_pred cCCcc-CcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCc-EecCCCCCh-hhccc
Confidence 77653 3333 456667777777777654 333443 566666666 666666665 44443
No 118
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.42 E-value=4.9e-14 Score=149.96 Aligned_cols=128 Identities=16% Similarity=0.084 Sum_probs=73.9
Q ss_pred ccCCCcEEeeCCCCCCCcCC-CCCC-C-CcccEEEecccC-Cc--ccCccccCCCCCCEEeccCCccCcc----cCcCCC
Q 038130 253 HLEFLKKLNLLGCSKLKRLP-EFSS-S-GKIEEIWLDGTA-IE--ELPSSIGCLSRLLYLYLSDCKRLKS----LPSSLS 322 (526)
Q Consensus 253 ~l~~L~~L~l~~~~~~~~lp-~~~~-l-~~L~~L~L~~~~-i~--~lp~~i~~L~~L~~L~L~~~~~~~~----lp~~i~ 322 (526)
.+++|++|++++|......+ .+.. + .+|++|+++++. +. .++..+.++++|++|+|++|.+... ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 56777777777764222111 1322 2 237777777554 22 2333345677777777777754322 222334
Q ss_pred CCCCCcEEeecCCCCC----CcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcc
Q 038130 323 QLKSLKLLNLHGCSNL----QRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLD 383 (526)
Q Consensus 323 ~l~~L~~L~l~~~~~~----~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~ 383 (526)
.+++|++|++++|... ..++..+.++++|+ .|++++|.+ ..++..+... ++|+.|.+.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~-~L~L~~~~~-~~l~~~~~~~-~~L~~L~l~ 251 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV-SVKVGDFEI-LELVGFFKAA-ANLEEFCGG 251 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC-EEECSSCBG-GGGHHHHHHC-TTCCEEEEC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc-EEeccCccH-HHHHHHHhhh-hHHHhhccc
Confidence 5677777777765443 22333445666777 777777776 4466555555 777777774
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.41 E-value=7.6e-13 Score=131.63 Aligned_cols=155 Identities=17% Similarity=0.108 Sum_probs=121.1
Q ss_pred CcceEEEeccCCCCCCCChhcc-ccCCCcEEeeCCCCCCCcCC-C-CCCCCcccEEEecccCCcccCc-cccCCCCCCEE
Q 038130 231 NTLVILNLSEYVSLNSLPAEIL-HLEFLKKLNLLGCSKLKRLP-E-FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYL 306 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~~lp-~-~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L 306 (526)
..++.|++++|......+..+. .+++|++|+|++|. +..++ . +..+++|++|+|++|.++.+|. .+..+++|++|
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 3578999999654333344455 89999999999976 44544 3 8999999999999999998876 58999999999
Q ss_pred eccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcc----cCcccccceeeccccccccccChhhhcccCC--cceE
Q 038130 307 YLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDF----GNLEASNSTLYAKGTAAKREVPSSIVGSNNN--LYEL 380 (526)
Q Consensus 307 ~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~----~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~--L~~L 380 (526)
+|++|.+....|..+..+++|++|++++|. +..+|..+ ..+++|+ .|++++|.+ ..+|......++. |+.|
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~-~L~L~~N~l-~~l~~~~~~~l~~~~l~~l 194 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLM-LLDLSSNKL-KKLPLTDLQKLPAWVKNGL 194 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCC-EEECCSSCC-CCCCHHHHHHSCHHHHTTE
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCC-EEECCCCCC-CccCHHHhhhccHhhcceE
Confidence 999999777778889999999999999964 55677654 6789999 999999999 6677543333365 4889
Q ss_pred EcccCCCCC
Q 038130 381 SLDRSWGGD 389 (526)
Q Consensus 381 ~l~~~~~~~ 389 (526)
++..|...|
T Consensus 195 ~l~~N~~~C 203 (361)
T 2xot_A 195 YLHNNPLEC 203 (361)
T ss_dssp ECCSSCEEC
T ss_pred EecCCCccC
Confidence 997774444
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.41 E-value=1.5e-12 Score=117.11 Aligned_cols=128 Identities=17% Similarity=0.177 Sum_probs=80.6
Q ss_pred eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCccc-CccccCCCCCCEEeccC
Q 038130 234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLYLSD 310 (526)
Q Consensus 234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~ 310 (526)
+++++++ +.++.+|..+. .+|++|++++|......+. +..+++|++|++++|.++.+ |..++.+++|++|+|++
T Consensus 11 ~~l~~s~-~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTT-SCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCC-CCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 5666666 34566665443 3677777777643332232 56667777777777777655 55667777777777777
Q ss_pred CccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccc
Q 038130 311 CKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKRE 365 (526)
Q Consensus 311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~ 365 (526)
|.+.+..|..+..+++|++|++++|...+..|..+..+++|+ .|++++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT-SLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC-EEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC-EEEeCCCCccCc
Confidence 665555555566677777777777655555566666676777 777777666433
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=2.6e-15 Score=157.77 Aligned_cols=179 Identities=18% Similarity=0.159 Sum_probs=101.4
Q ss_pred ccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccC--------------CcccCccccCCCCCCEEe-ccCCccCcc
Q 038130 253 HLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTA--------------IEELPSSIGCLSRLLYLY-LSDCKRLKS 316 (526)
Q Consensus 253 ~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~--------------i~~lp~~i~~L~~L~~L~-L~~~~~~~~ 316 (526)
.+++|+.|+|++|. ++.+|. ++.+.+|+.|+++++. ....|..++.+++|+.|+ ++.|. ...
T Consensus 347 ~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~~ 424 (567)
T 1dce_A 347 TDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LDD 424 (567)
T ss_dssp TTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HHH
T ss_pred cCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cch
Confidence 35566666666543 344553 5555666666655442 224455566666777666 44332 111
Q ss_pred cCc------CCCC--CCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCC
Q 038130 317 LPS------SLSQ--LKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGG 388 (526)
Q Consensus 317 lp~------~i~~--l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 388 (526)
++. .+.. ...|++|++++| .+..+|. ++++++|+ .|++++|.+ ..+|..+..+ ++|+.|+++.|
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~-~L~Ls~N~l-~~lp~~~~~l-~~L~~L~Ls~N--- 496 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVT-HLDLSHNRL-RALPPALAAL-RCLEVLQASDN--- 496 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCC-EEECCSSCC-CCCCGGGGGC-TTCCEEECCSS---
T ss_pred hhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCc-EeecCcccc-cccchhhhcC-CCCCEEECCCC---
Confidence 111 0100 124777777775 3445665 77777777 777777777 4777766666 77777777443
Q ss_pred CCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCcCC
Q 038130 389 DKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQSLP 459 (526)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 459 (526)
... . .+ .+..+. +|+.|+|++|.+++++ .|..++.+++|+.|+|++|+ +..+|
T Consensus 497 -~l~---~-lp-~l~~l~-~L~~L~Ls~N~l~~~~----------~p~~l~~l~~L~~L~L~~N~-l~~~~ 549 (567)
T 1dce_A 497 -ALE---N-VD-GVANLP-RLQELLLCNNRLQQSA----------AIQPLVSCPRLVLLNLQGNS-LCQEE 549 (567)
T ss_dssp -CCC---C-CG-GGTTCS-SCCEEECCSSCCCSSS----------TTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred -CCC---C-Cc-ccCCCC-CCcEEECCCCCCCCCC----------CcHHHhcCCCCCEEEecCCc-CCCCc
Confidence 211 1 11 233443 7888888877654421 15677778888888888875 33343
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.40 E-value=2.3e-13 Score=129.04 Aligned_cols=169 Identities=21% Similarity=0.202 Sum_probs=131.1
Q ss_pred ccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEee
Q 038130 253 HLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNL 332 (526)
Q Consensus 253 ~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 332 (526)
.+..+..++++++. +..++.+..+.+|++|++++|.++.+| .++.+++|++|++++|.+ ..+|. +..+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~-i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQS-VTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSC-TTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCC-cccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCcc-CCChh-hccCCCCCEEEC
Confidence 36677788888854 666777888999999999999999998 799999999999999874 45665 899999999999
Q ss_pred cCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCcccEE
Q 038130 333 HGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLTSL 412 (526)
Q Consensus 333 ~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 412 (526)
++|. +..+|... . ++|+ .|++++|.+ ..++ .+..+ ++|+.|+++.| ..... + .+..+ ++|+.|
T Consensus 93 ~~N~-l~~l~~~~-~-~~L~-~L~L~~N~l-~~~~-~l~~l-~~L~~L~Ls~N----~i~~~----~-~l~~l-~~L~~L 155 (263)
T 1xeu_A 93 NRNR-LKNLNGIP-S-ACLS-RLFLDNNEL-RDTD-SLIHL-KNLEILSIRNN----KLKSI----V-MLGFL-SKLEVL 155 (263)
T ss_dssp CSSC-CSCCTTCC-C-SSCC-EEECCSSCC-SBSG-GGTTC-TTCCEEECTTS----CCCBC----G-GGGGC-TTCCEE
T ss_pred CCCc-cCCcCccc-c-Cccc-EEEccCCcc-CCCh-hhcCc-ccccEEECCCC----cCCCC----h-HHccC-CCCCEE
Confidence 9965 45566533 3 7899 999999999 5555 45555 99999999554 21111 1 23344 499999
Q ss_pred EccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccC
Q 038130 413 YLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERL 455 (526)
Q Consensus 413 ~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l 455 (526)
++++|.++++ ..+..+++|+.|++++|+..
T Consensus 156 ~L~~N~i~~~-------------~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 156 DLHGNEITNT-------------GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ECTTSCCCBC-------------TTSTTCCCCCEEEEEEEEEE
T ss_pred ECCCCcCcch-------------HHhccCCCCCEEeCCCCccc
Confidence 9999977652 35678899999999998643
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=9.8e-14 Score=150.38 Aligned_cols=149 Identities=17% Similarity=0.175 Sum_probs=89.0
Q ss_pred CcceEEEeccCCCCCCCChhccccCCCcEEeeCCC----CCCCcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCE
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLEFLKKLNLLGC----SKLKRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLY 305 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~----~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 305 (526)
...+.|++.++ .+...+..+.....|+.+.+... +.+...+. +..+..|+.|+|++|.+..+|..+..+++|++
T Consensus 173 ~~~~~l~L~~n-~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFAN-GKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCC-CCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 34567777763 33334443333333444333321 11222333 77888899999999999999988889999999
Q ss_pred EeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccC
Q 038130 306 LYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRS 385 (526)
Q Consensus 306 L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 385 (526)
|+|++|.+. .+|..++.|++|++|+|++|. +..+|..+++|++|+ .|++++|.+ +.+|..+..+ ++|+.|+++.|
T Consensus 252 L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~-~L~L~~N~l-~~lp~~~~~l-~~L~~L~L~~N 326 (727)
T 4b8c_D 252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLK-YFYFFDNMV-TTLPWEFGNL-CNLQFLGVEGN 326 (727)
T ss_dssp CBCTTSCCS-CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCS-EEECCSSCC-CCCCSSTTSC-TTCCCEECTTS
T ss_pred EEeeCCcCc-ccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCC-EEECCCCCC-CccChhhhcC-CCccEEeCCCC
Confidence 999998755 888888899999999999866 447888899999999 999999988 6888887666 88888888443
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.37 E-value=4.1e-12 Score=114.28 Aligned_cols=123 Identities=20% Similarity=0.235 Sum_probs=96.7
Q ss_pred cEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCcc--ccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecC
Q 038130 258 KKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSS--IGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHG 334 (526)
Q Consensus 258 ~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~--i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~ 334 (526)
++++++++. ++.+|. +.. ++++|++++|.++.++.. ++.+++|++|+|++|.+.+..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~-l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSC-CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCC-cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 788998854 577775 333 889999999999988764 88999999999999987777788889999999999999
Q ss_pred CCCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccC
Q 038130 335 CSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRS 385 (526)
Q Consensus 335 ~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 385 (526)
|......|..+.++++|+ .|++++|.+.+..|..+..+ ++|+.|+++.|
T Consensus 88 N~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N 136 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLK-TLNLYDNQISCVMPGSFEHL-NSLTSLNLASN 136 (192)
T ss_dssp CCCCEECSSSSTTCTTCC-EEECCSSCCCEECTTSSTTC-TTCCEEECTTC
T ss_pred CcCCccCHHHhcCCCCCC-EEECCCCcCCeeCHHHhhcC-CCCCEEEeCCC
Confidence 776665666688899999 99999998855556555554 66777766544
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.36 E-value=1.4e-12 Score=114.58 Aligned_cols=79 Identities=23% Similarity=0.254 Sum_probs=31.3
Q ss_pred CCCcEEeeCCCCCC-CcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEee
Q 038130 255 EFLKKLNLLGCSKL-KRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNL 332 (526)
Q Consensus 255 ~~L~~L~l~~~~~~-~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 332 (526)
++|++|++++|... ..+|. +..+++|++|++++|.++.+ ..++.+++|++|++++|.+...+|..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 34444444444321 13332 23444444444444444433 33444444444444444333223333333444444444
Q ss_pred cC
Q 038130 333 HG 334 (526)
Q Consensus 333 ~~ 334 (526)
++
T Consensus 103 s~ 104 (168)
T 2ell_A 103 SG 104 (168)
T ss_dssp BS
T ss_pred cC
Confidence 44
No 126
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.35 E-value=4.2e-13 Score=115.62 Aligned_cols=111 Identities=18% Similarity=0.290 Sum_probs=98.0
Q ss_pred CCCCCCcEEEecccccccCchHHHHHHHHHhCCCceEeeC-CcCCCccchHHHHHHhhhceEE-EEecCCccchhhcHHH
Q 038130 9 FQHNRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGN-DLKRGDEISQSLGDAVEVSSIY-IIFSESDASSSWCLDE 86 (526)
Q Consensus 9 ~~~~~~~~f~s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~-~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l~~~~~~~~ 86 (526)
....+|||||||+++| .+-|..++..+|..+|+.+|.|+ ++.+|+.+...|.+...+.-.+ +++...++.+.|+..|
T Consensus 16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E 94 (154)
T 3h16_A 16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE 94 (154)
T ss_dssp --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence 4568999999999999 55799999999999999999999 8999999999999999999999 6667888999999999
Q ss_pred HHHHHHHHhhCCCeEEEEEeeccchhhhhccccH
Q 038130 87 LLKIVECRTNYGQIVVAVCYRVEPSHVRKQIGSF 120 (526)
Q Consensus 87 w~~i~~~~~~~~~~il~~sY~~Lp~~lk~~cf~y 120 (526)
|..++++.......|+|+.|+.-|+++++|...|
T Consensus 95 l~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~ 128 (154)
T 3h16_A 95 LDGLFQLESSGRSRILPIWHKVSKDEVASFSPTM 128 (154)
T ss_dssp HHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCC
T ss_pred HHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccH
Confidence 9999987766667899999999999998755544
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.35 E-value=9.6e-13 Score=113.19 Aligned_cols=123 Identities=19% Similarity=0.112 Sum_probs=66.3
Q ss_pred CCCcEEeeCCCCCC-CcCCC-CCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEee
Q 038130 255 EFLKKLNLLGCSKL-KRLPE-FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNL 332 (526)
Q Consensus 255 ~~L~~L~l~~~~~~-~~lp~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 332 (526)
++|+.|++++|... ..+|. +..+++|++|++++|.++.+ ..++.+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 45555555555432 23443 45555566666665555555 44556666666666665544445554445666666666
Q ss_pred cCCCCCCcC--CCcccCcccccceeeccccccccccCh----hhhcccCCcceEEc
Q 038130 333 HGCSNLQRL--PDDFGNLEASNSTLYAKGTAAKREVPS----SIVGSNNNLYELSL 382 (526)
Q Consensus 333 ~~~~~~~~l--p~~~~~l~~L~~~L~l~~~~~~~~~~~----~l~~~~~~L~~L~l 382 (526)
++|.. ..+ |..++.+++|+ .|++++|.+ ..++. .+..+ ++|+.|++
T Consensus 96 s~N~i-~~~~~~~~~~~l~~L~-~L~l~~N~l-~~~~~~~~~~~~~l-~~L~~L~l 147 (149)
T 2je0_A 96 SGNKI-KDLSTIEPLKKLENLK-SLDLFNCEV-TNLNDYRENVFKLL-PQLTYLDG 147 (149)
T ss_dssp TTSCC-CSHHHHGGGGGCTTCC-EEECTTCGG-GGSTTHHHHHHHHC-TTCCEETT
T ss_pred CCCcC-CChHHHHHHhhCCCCC-EEeCcCCcc-cchHHHHHHHHHHC-CCcccccC
Confidence 66443 322 24556666666 666666666 33333 23333 66666655
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.35 E-value=8.1e-12 Score=112.37 Aligned_cols=124 Identities=21% Similarity=0.236 Sum_probs=81.1
Q ss_pred cEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCC
Q 038130 258 KKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSN 337 (526)
Q Consensus 258 ~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~ 337 (526)
++++++++ .++.+|.- -..++++|++++|.|+.+|..+..+++|++|++++|.+....|..+..+++|++|++++|..
T Consensus 13 ~~l~~~~~-~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTS-CCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCC-CCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 46666664 35555541 12467777777777777777777778888888887775555555677777888888877655
Q ss_pred CCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEcccC
Q 038130 338 LQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRS 385 (526)
Q Consensus 338 ~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 385 (526)
....|..+.++++|+ .|++++|.+ ..+|...+..+++|+.|++..|
T Consensus 91 ~~i~~~~f~~l~~L~-~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLR-LLSLHGNDI-SVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CBCCTTTTTTCTTCC-EEECCSSCC-CBCCTTTTTTCTTCCEEECCSS
T ss_pred CEeCHHHhCCCCCCC-EEECCCCCC-CeeChhhhhcCccccEEEeCCC
Confidence 444455677777777 777777777 5555543333356666666443
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.34 E-value=8.2e-13 Score=113.63 Aligned_cols=126 Identities=22% Similarity=0.205 Sum_probs=105.3
Q ss_pred CcceEEEeccCCCC-CCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcc-cCccccCCCCCCEEec
Q 038130 231 NTLVILNLSEYVSL-NSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEE-LPSSIGCLSRLLYLYL 308 (526)
Q Consensus 231 ~~l~~L~l~~~~~~-~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~L 308 (526)
..++.|++++|... ..+|..+..+++|++|++++|. +..++.+..+++|++|++++|.++. +|..++.+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 56899999997654 4888888999999999999985 5555779999999999999999997 8888888999999999
Q ss_pred cCCccCcc-cCcCCCCCCCCcEEeecCCCCCCcCCC----cccCcccccceeeccc
Q 038130 309 SDCKRLKS-LPSSLSQLKSLKLLNLHGCSNLQRLPD----DFGNLEASNSTLYAKG 359 (526)
Q Consensus 309 ~~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~~L~l~~ 359 (526)
++|.+.+. .|..+..+++|++|++++|. +..+|. .++.+++|+ .|++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~-~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLT-YLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCC-EETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcc-cccCCC
Confidence 99985542 34778999999999999975 455554 688889999 888753
No 130
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.34 E-value=6.5e-16 Score=166.23 Aligned_cols=138 Identities=7% Similarity=0.025 Sum_probs=104.4
Q ss_pred ecccccccCchHHHHHHHHHhCCCceEeeCCcCCCccchHHHHHHhhhceEEEEecCCccchhh-cHHHHHHHHHHHhhC
Q 038130 19 SFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYIIFSESDASSSW-CLDELLKIVECRTNY 97 (526)
Q Consensus 19 s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~I~~kc~GlPLa~~~~g~~l~~~~-~~~~w~~i~~~~~~~ 97 (526)
.++.+|+|++|..++ + .. . +++.++| |+|+|||++++|+.++.+. ..++|.... ...
T Consensus 297 ~LS~eEA~eLF~~~~-g----~~--------~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~~---~~~ 354 (1221)
T 1vt4_I 297 TLTPDEVKSLLLKYL-D----CR--------P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHVN---CDK 354 (1221)
T ss_dssp CCCHHHHHHHHHHHH-C----CC--------T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHCS---CHH
T ss_pred CcCHHHHHHHHHHHc-C----CC--------H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcCC---hhH
Confidence 578889999998872 1 11 1 4555555 9999999999998888763 567887641 111
Q ss_pred CCeEEEEEeeccchhh-hhccccHHHHHHHHHhhchhhhhcCCceEEeehhhccccchHHHHHHHHhhCCCCcccchHHH
Q 038130 98 GQIVVAVCYRVEPSHV-RKQIGSFEDSFSKLEERFPDKMQTGKKHICLDVAYFLKEERSDMVLSFLDACGFFAGIGLPVL 176 (526)
Q Consensus 98 ~~~il~~sY~~Lp~~l-k~~cf~y~~~Fp~d~~i~~~~~~~~~~Li~lwiAegf~~~~~~~~~~~~~~~~~~~~~~~~~L 176 (526)
...++..||+.||++. | +||+||++||+++.| +.+.++.+|+|+|. +.+..+ +++|
T Consensus 355 I~aaLelSYd~Lp~eelK-~cFL~LAIFPed~~I------~~elLa~LW~aeGe---------edAe~~-------L~eL 411 (1221)
T 1vt4_I 355 LTTIIESSLNVLEPAEYR-KMFDRLSVFPPSAHI------PTILLSLIWFDVIK---------SDVMVV-------VNKL 411 (1221)
T ss_dssp HHHHHHHHHHHSCTTHHH-HHHHHTTSSCTTSCE------EHHHHHHHHCSSCS---------HHHHHH-------HHHH
T ss_pred HHHHHHHHHHhCCHHHHH-HHHHHHhCCCCCCCC------CHHHHHHHhcCCCH---------HHHHHH-------HHHH
Confidence 1124556999999999 8 899999999999999 77788999999971 123333 8999
Q ss_pred hhccceeeec-CCeEEechhHHHHHH
Q 038130 177 VNRCLITVSH-SNTITMHDSLGDMER 201 (526)
Q Consensus 177 i~~sl~~~~~-~~~~~mhdl~~dla~ 201 (526)
+++||++... .+.|+|||++++++.
T Consensus 412 vdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 412 HKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 9999999763 568999999999763
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=4e-12 Score=112.63 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=78.3
Q ss_pred ccccCCCcEEeeCCCCCCCcCCCCCCCC-cccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCC-CCCCCCc
Q 038130 251 ILHLEFLKKLNLLGCSKLKRLPEFSSSG-KIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSL-SQLKSLK 328 (526)
Q Consensus 251 ~~~l~~L~~L~l~~~~~~~~lp~~~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i-~~l~~L~ 328 (526)
+.++.+|++|++++|. +..+|.+..+. +|++|++++|.++.+ ..++.+++|++|++++|.+. .+|..+ ..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~-l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCC-CchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCC
Confidence 3446677777777754 44556555554 677777777777766 45677777777777776643 444433 6677777
Q ss_pred EEeecCCCCCCcCCC--cccCcccccceeeccccccccccChh----hhcccCCcceEEc
Q 038130 329 LLNLHGCSNLQRLPD--DFGNLEASNSTLYAKGTAAKREVPSS----IVGSNNNLYELSL 382 (526)
Q Consensus 329 ~L~l~~~~~~~~lp~--~~~~l~~L~~~L~l~~~~~~~~~~~~----l~~~~~~L~~L~l 382 (526)
+|++++|. ++.+|. .+..+++|+ .|++++|.+ ..+|.. +..+ ++|+.|++
T Consensus 92 ~L~L~~N~-i~~~~~~~~l~~l~~L~-~L~l~~N~i-~~~~~~~~~~~~~l-~~L~~Ld~ 147 (176)
T 1a9n_A 92 ELILTNNS-LVELGDLDPLASLKSLT-YLCILRNPV-TNKKHYRLYVIYKV-PQVRVLDF 147 (176)
T ss_dssp EEECCSCC-CCCGGGGGGGGGCTTCC-EEECCSSGG-GGSTTHHHHHHHHC-TTCSEETT
T ss_pred EEECCCCc-CCcchhhHhhhcCCCCC-EEEecCCCC-CCcHhHHHHHHHHC-CccceeCC
Confidence 77777754 355554 566677777 777777776 455553 3333 55555555
No 132
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.30 E-value=5.5e-13 Score=141.85 Aligned_cols=13 Identities=38% Similarity=0.695 Sum_probs=8.0
Q ss_pred CcccEEEccCCCC
Q 038130 407 TTLTSLYLNYCGI 419 (526)
Q Consensus 407 ~~L~~L~L~~~~~ 419 (526)
++|++|++++|.+
T Consensus 289 ~~L~~L~L~~~~l 301 (594)
T 2p1m_B 289 SRLTTLNLSYATV 301 (594)
T ss_dssp TTCCEEECTTCCC
T ss_pred CCCCEEEccCCCC
Confidence 3666666666653
No 133
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.28 E-value=3.2e-13 Score=143.65 Aligned_cols=62 Identities=11% Similarity=0.073 Sum_probs=40.1
Q ss_pred ccCCCCEeccc-----CCccCCcCCC---------cccccccccccccccccc-----CC-CCCCCCEEeccCCCCCCHH
Q 038130 440 QLSRLVVLNLN-----YCERLQSLPK---------LPFNLQGIFAHHCTALSS-----IS-YKSSTQLFDLSDNFKLDRN 499 (526)
Q Consensus 440 ~l~~L~~L~L~-----~~~~l~~lp~---------~~~~L~~L~l~~c~~L~~-----l~-~~~~L~~L~l~~c~~l~~~ 499 (526)
.+++|+.|+++ +|..++..|. ..++|+.|++++ .+.. +. .+++|+.|++++|. ++..
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~ 471 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDL 471 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHH
T ss_pred hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHH
Confidence 57888888888 4556664442 135788888865 2222 11 27889999998886 5666
Q ss_pred HHHHH
Q 038130 500 AVRII 504 (526)
Q Consensus 500 ~~~~~ 504 (526)
....+
T Consensus 472 ~~~~l 476 (594)
T 2p1m_B 472 GMHHV 476 (594)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.28 E-value=2.6e-11 Score=109.04 Aligned_cols=124 Identities=29% Similarity=0.370 Sum_probs=103.1
Q ss_pred eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCC-CCCCCCcccEEEecccCCcccCc-cccCCCCCCEEeccCC
Q 038130 234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLP-EFSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLSDC 311 (526)
Q Consensus 234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~ 311 (526)
+++++++ +.+..+|..+ .++|++|++++|. +..+| .+..+.+|++|++++|.|+.++. .|.++++|++|+|++|
T Consensus 13 ~~l~~~~-~~l~~ip~~~--~~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSN-KGLKVLPKGI--PRDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTT-SCCSSCCSCC--CTTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCC-CCCCcCCCCC--CCCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 5788887 5677888765 3689999999975 55676 48899999999999999998764 5899999999999999
Q ss_pred ccCcccCcCCCCCCCCcEEeecCCCCCCcCCC-cccCcccccceeeccccccc
Q 038130 312 KRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPD-DFGNLEASNSTLYAKGTAAK 363 (526)
Q Consensus 312 ~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~~L~l~~~~~~ 363 (526)
.+....|..+..+++|++|++++|.. ..+|. .+..+++|+ .|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~-~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALS-HLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCC-EEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCC-CeeChhhhhcCcccc-EEEeCCCCee
Confidence 87766667799999999999999765 45554 588999999 9999998773
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.27 E-value=1.3e-11 Score=129.56 Aligned_cols=102 Identities=19% Similarity=0.134 Sum_probs=51.0
Q ss_pred CcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCC
Q 038130 257 LKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCS 336 (526)
Q Consensus 257 L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~ 336 (526)
|++|++++|. ++.+|.+..+.+|++|+|++|.++.+|..++++++|++|+|++|.+. .+| .++.+++|++|++++|.
T Consensus 443 L~~L~Ls~n~-l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 443 VRVLHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp CSEEECTTSC-CSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSC
T ss_pred ceEEEecCCC-CCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC-CCc-ccCCCCCCcEEECCCCC
Confidence 4555555542 33344455555555555555555555555555555555555555432 244 45555555555555543
Q ss_pred CCCcC-CCcccCcccccceeecccccc
Q 038130 337 NLQRL-PDDFGNLEASNSTLYAKGTAA 362 (526)
Q Consensus 337 ~~~~l-p~~~~~l~~L~~~L~l~~~~~ 362 (526)
..+.. |..++++++|+ .|++++|.+
T Consensus 520 l~~~~~p~~l~~l~~L~-~L~L~~N~l 545 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLV-LLNLQGNSL 545 (567)
T ss_dssp CCSSSTTGGGGGCTTCC-EEECTTSGG
T ss_pred CCCCCCcHHHhcCCCCC-EEEecCCcC
Confidence 33222 45555555555 555555555
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=6.3e-11 Score=104.94 Aligned_cols=128 Identities=23% Similarity=0.329 Sum_probs=89.2
Q ss_pred ceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCcccCcc-ccCCCCCCEEecc
Q 038130 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYLS 309 (526)
Q Consensus 233 l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~ 309 (526)
.+.+++++ ..+..+|..+ .++|++|++++|. +..++. +..+.+|++|++++|.++.+|.. ++.+++|++|+++
T Consensus 9 ~~~l~~~~-~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNS-KGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCS-SCCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecC-CCCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 35677766 4566677544 3678888888865 444443 67788888888888888877654 5788888888888
Q ss_pred CCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCc-ccCcccccceeecccccccccc
Q 038130 310 DCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDD-FGNLEASNSTLYAKGTAAKREV 366 (526)
Q Consensus 310 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~~L~l~~~~~~~~~ 366 (526)
+|.+.+..+..+..+++|++|++++|.. ..+|.. +..+++|+ .|++++|.+....
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~-~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQ-KIWLHTNPWDCSC 140 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCC-EEECCSSCBCCCH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCcccC-EEEecCCCeeccC
Confidence 8775544444467788888888888644 445543 57777888 8888888774443
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.24 E-value=1.5e-11 Score=108.89 Aligned_cols=126 Identities=14% Similarity=0.156 Sum_probs=106.3
Q ss_pred CcceEEEeccCCCCCCCChhccccC-CCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccc-cCCCCCCEEec
Q 038130 231 NTLVILNLSEYVSLNSLPAEILHLE-FLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSI-GCLSRLLYLYL 308 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L 308 (526)
.+++.|++++| .+..+|. +..+. +|++|++++|. +..++.+..+++|++|++++|.++.+|..+ +.+++|++|++
T Consensus 19 ~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 19 VRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 57899999996 5556776 44455 99999999975 555688999999999999999999998765 99999999999
Q ss_pred cCCccCcccCc--CCCCCCCCcEEeecCCCCCCcCCCc----ccCcccccceeecccccc
Q 038130 309 SDCKRLKSLPS--SLSQLKSLKLLNLHGCSNLQRLPDD----FGNLEASNSTLYAKGTAA 362 (526)
Q Consensus 309 ~~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~----~~~l~~L~~~L~l~~~~~ 362 (526)
++|.+ +.+|. .+..+++|++|++++|.. ..+|.. ++.+++|+ .|++++|..
T Consensus 96 ~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~-~Ld~~~n~~ 152 (176)
T 1a9n_A 96 TNNSL-VELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVR-VLDFQKVKL 152 (176)
T ss_dssp CSCCC-CCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCS-EETTEECCH
T ss_pred CCCcC-CcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccc-eeCCCcCCH
Confidence 99974 66776 788999999999999754 567764 88999999 999999876
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.20 E-value=2.3e-10 Score=101.32 Aligned_cols=122 Identities=19% Similarity=0.218 Sum_probs=67.1
Q ss_pred CcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCcc-ccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCC
Q 038130 257 LKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGC 335 (526)
Q Consensus 257 L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~ 335 (526)
.+.++++++. +..+|. ....+|++|++++|.++.+|.. ++.+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~-l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSC-CSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCC-CccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3566666643 444553 1124667777777776665543 466677777777766544333333566667777777665
Q ss_pred CCCCcCCCcccCcccccceeeccccccccccChhhhcccCCcceEEc
Q 038130 336 SNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSL 382 (526)
Q Consensus 336 ~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 382 (526)
......+..+.++++|+ .|++++|.+ ..+|..++..+++|+.|++
T Consensus 87 ~l~~~~~~~~~~l~~L~-~L~l~~N~l-~~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLK-ELALDTNQL-KSVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp CCCCCCTTTTTTCTTCC-EEECCSSCC-SCCCTTTTTTCTTCCEEEC
T ss_pred CccccCHHHhhCCcccC-EEECcCCcc-eEeCHHHhcCCcccCEEEe
Confidence 44333333456666666 666666666 4444443222244444444
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.17 E-value=2.2e-13 Score=123.36 Aligned_cols=142 Identities=17% Similarity=0.235 Sum_probs=102.9
Q ss_pred eEEEeccC-CCCCCCChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCccccCCCCCCEEeccCCc
Q 038130 234 VILNLSEY-VSLNSLPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLYLSDCK 312 (526)
Q Consensus 234 ~~L~l~~~-~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~ 312 (526)
+...+.+. ..+..+|..+..+++|++|++++|. +..+|.+..+++|++|++++|.++.+|..++.+++|++|++++|.
T Consensus 26 ~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 26 EKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ 104 (198)
T ss_dssp SEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE
T ss_pred heeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-CccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc
Confidence 34444432 2344555588889999999999875 555777888888999999999998888888888899999999887
Q ss_pred cCcccCcCCCCCCCCcEEeecCCCCCCcCC--CcccCcccccceeeccccccccccChh----------hhcccCCcceE
Q 038130 313 RLKSLPSSLSQLKSLKLLNLHGCSNLQRLP--DDFGNLEASNSTLYAKGTAAKREVPSS----------IVGSNNNLYEL 380 (526)
Q Consensus 313 ~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~~L~l~~~~~~~~~~~~----------l~~~~~~L~~L 380 (526)
+. .+| .+..+++|++|++++|. +..+| ..+..+++|+ .|++++|.+.+..|.. +..+ ++|+.|
T Consensus 105 l~-~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~-~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l-~~L~~L 179 (198)
T 1ds9_A 105 IA-SLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLE-DLLLAGNPLYNDYKENNATSEYRIEVVKRL-PNLKKL 179 (198)
T ss_dssp CC-CHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCS-EEEECSCHHHHHHHTTTTHHHHHHHHHHHC-SSCSEE
T ss_pred CC-cCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCC-EEEecCCccccccccccchHHHHHHHHHhC-CCcEEE
Confidence 44 466 47788889999998864 34443 3577888888 8999888875444431 3333 666666
Q ss_pred E
Q 038130 381 S 381 (526)
Q Consensus 381 ~ 381 (526)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 5
No 140
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.12 E-value=3.1e-13 Score=143.72 Aligned_cols=153 Identities=13% Similarity=0.011 Sum_probs=113.5
Q ss_pred CCCcEEE--ecccccccCchHHHHHHHHHhCCCceEeeCCcCCCccchHHHHHHhhhceEEEEecCCccchhhcHHHHHH
Q 038130 12 NRNDVFL--SFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYIIFSESDASSSWCLDELLK 89 (526)
Q Consensus 12 ~~~~~f~--s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~I~~kc~GlPLa~~~~g~~l~~~~~~~~w~~ 89 (526)
..|.|-. .++.+|+|++|...++. . .+.. .+.+++|+++|+|+|||+..+|..++... .+|..
T Consensus 276 ~~~~v~~l~~L~~~ea~~L~~~~~~~-----~-----~~~~---~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~ 340 (591)
T 1z6t_A 276 PKYVVPVESSLGKEKGLEILSLFVNM-----K-----KADL---PEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEY 340 (591)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHTS-----C-----GGGS---CTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHH
T ss_pred CceEeecCCCCCHHHHHHHHHHHhCC-----C-----cccc---cHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHH
Confidence 3344443 68889999999887643 1 1122 67889999999999999988888887654 36888
Q ss_pred HHHHHhhCCC---------------eEEEEEeeccchhhhhccccHHHHHHHHHhhchhhhhcCCceEEeehhhccccch
Q 038130 90 IVECRTNYGQ---------------IVVAVCYRVEPSHVRKQIGSFEDSFSKLEERFPDKMQTGKKHICLDVAYFLKEER 154 (526)
Q Consensus 90 i~~~~~~~~~---------------~il~~sY~~Lp~~lk~~cf~y~~~Fp~d~~i~~~~~~~~~~Li~lwiAegf~~~~ 154 (526)
+++....... .++..||+.||.+.| .||.++++||+++.| +.+.++.+|.++.
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~-~~l~~la~f~~~~~i------~~~~l~~l~~~~~----- 408 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIK-DYYTDLSILQKDVKV------PTKVLCILWDMET----- 408 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTH-HHHHHGGGCCTTCCE------EHHHHHHHHTCCH-----
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHH-HHHHHccccCCCCcc------CHHHHHHHhccCH-----
Confidence 8776632211 133449999999999 899999999999888 6667777786652
Q ss_pred HHHHHHHHhhCCCCcccchHHHhhccceeeecC---CeEEechhHHHHHHHH
Q 038130 155 SDMVLSFLDACGFFAGIGLPVLVNRCLITVSHS---NTITMHDSLGDMEREI 203 (526)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~Li~~sl~~~~~~---~~~~mhdl~~dla~~i 203 (526)
+ .+... +++|+++||++...+ ..|+|||++|++++..
T Consensus 409 -~----~~~~~-------l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 409 -E----EVEDI-------LQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp -H----HHHHH-------HHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred -H----HHHHH-------HHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 1 12222 899999999986543 2799999999999876
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.06 E-value=7.9e-10 Score=97.08 Aligned_cols=102 Identities=19% Similarity=0.227 Sum_probs=56.0
Q ss_pred CcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCccc-CccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecC
Q 038130 257 LKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHG 334 (526)
Q Consensus 257 L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~ 334 (526)
.++++++++. ++.+|. + ..+|++|+|++|.|+.+ |..++++++|++|+|++|.+.+..|..+..+++|++|++++
T Consensus 11 ~~~l~~s~n~-l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCC-cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3566666643 444553 2 25566666666666655 34466666666666666654333333345666666666666
Q ss_pred CCCCCcCCCcccCcccccceeecccccc
Q 038130 335 CSNLQRLPDDFGNLEASNSTLYAKGTAA 362 (526)
Q Consensus 335 ~~~~~~lp~~~~~l~~L~~~L~l~~~~~ 362 (526)
|......+..+.++++|+ .|++++|.+
T Consensus 88 N~l~~~~~~~~~~l~~L~-~L~L~~N~~ 114 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLT-HIWLLNNPW 114 (170)
T ss_dssp SCCCCCCTTTTTTCTTCC-EEECCSSCB
T ss_pred CccCEeCHHHhcCCCCCC-EEEeCCCCC
Confidence 443322222355666666 666666655
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.04 E-value=1.1e-09 Score=96.61 Aligned_cols=99 Identities=23% Similarity=0.446 Sum_probs=61.9
Q ss_pred cEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCccc-CccccCCCCCCEEeccCCccCcccCcC-CCCCCCCcEEeecC
Q 038130 258 KKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEEL-PSSIGCLSRLLYLYLSDCKRLKSLPSS-LSQLKSLKLLNLHG 334 (526)
Q Consensus 258 ~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~l~~ 334 (526)
+.++++++. +..+|. +. .+|++|+|++|.|+.+ |..++++++|++|+|++|.+. .+|.. +..+++|++|++++
T Consensus 15 ~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCC
Confidence 567776643 455554 32 6667777777777755 445677777777777776543 34433 46677777777776
Q ss_pred CCCCCcCCC-cccCcccccceeecccccc
Q 038130 335 CSNLQRLPD-DFGNLEASNSTLYAKGTAA 362 (526)
Q Consensus 335 ~~~~~~lp~-~~~~l~~L~~~L~l~~~~~ 362 (526)
|.. ..+|. .+.++++|+ .|++++|.+
T Consensus 91 N~l-~~l~~~~~~~l~~L~-~L~L~~N~~ 117 (174)
T 2r9u_A 91 NHL-KSIPRGAFDNLKSLT-HIYLYNNPW 117 (174)
T ss_dssp SCC-CCCCTTTTTTCTTCS-EEECCSSCB
T ss_pred Ccc-ceeCHHHhccccCCC-EEEeCCCCc
Confidence 543 34444 366677777 777777766
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.02 E-value=1.6e-09 Score=95.51 Aligned_cols=101 Identities=24% Similarity=0.335 Sum_probs=84.1
Q ss_pred ceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCcc-ccCCCCCCEEeccC
Q 038130 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYLSD 310 (526)
Q Consensus 233 l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~ 310 (526)
.+.+++++ +.+..+|..+. ++|++|++++|......|. +..+.+|++|+|++|.|+.+|.. ++++++|++|+|++
T Consensus 14 ~~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQN-IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCS-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCC-CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 36888888 56788888664 8999999999865444454 88999999999999999999876 58999999999999
Q ss_pred CccCcccCc-CCCCCCCCcEEeecCCCC
Q 038130 311 CKRLKSLPS-SLSQLKSLKLLNLHGCSN 337 (526)
Q Consensus 311 ~~~~~~lp~-~i~~l~~L~~L~l~~~~~ 337 (526)
|.+. .+|. .+..+++|++|++++|..
T Consensus 91 N~l~-~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 91 NHLK-SIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp SCCC-CCCTTTTTTCTTCSEEECCSSCB
T ss_pred Cccc-eeCHHHhccccCCCEEEeCCCCc
Confidence 9855 4555 488999999999999754
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.99 E-value=3.4e-09 Score=93.03 Aligned_cols=102 Identities=25% Similarity=0.231 Sum_probs=68.3
Q ss_pred ceEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCcc-ccCCCCCCEEeccC
Q 038130 233 LVILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPSS-IGCLSRLLYLYLSD 310 (526)
Q Consensus 233 l~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~ 310 (526)
.+.+++++ +.+..+|..+ .+.|++|++++|......|. +..+.+|++|+|++|.|+.+|.. +..+++|++|+|++
T Consensus 11 ~~~l~~s~-n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSG-KSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTT-SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCC-CCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 45677777 4556677655 36777788877653333343 67777778888887777777665 47777788888877
Q ss_pred CccCcccCcCCCCCCCCcEEeecCCCC
Q 038130 311 CKRLKSLPSSLSQLKSLKLLNLHGCSN 337 (526)
Q Consensus 311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~ 337 (526)
|.+.+..+..+..+++|++|++++|..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 764443334467777788887777643
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.98 E-value=7.5e-12 Score=113.17 Aligned_cols=140 Identities=19% Similarity=0.175 Sum_probs=61.4
Q ss_pred ccCccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeeccccccccccChhhh
Q 038130 292 ELPSSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAAKREVPSSIV 371 (526)
Q Consensus 292 ~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~~~~~~~~l~ 371 (526)
.+|..++.+++|++|++++|.+. .+| .+..+++|++|++++|. +..+|..+..+++|+ .|++++|.+ ..+| .+.
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~-~L~L~~N~l-~~l~-~~~ 112 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLE-ELWISYNQI-ASLS-GIE 112 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCS-EEEEEEEEC-CCHH-HHH
T ss_pred hhhHHHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCC-EEECcCCcC-CcCC-ccc
Confidence 33444444455555555544422 244 34444555555554432 224444444444455 555555554 3333 233
Q ss_pred cccCCcceEEcccCCCCCCCCCCCCCcc-cCcccccCcccEEEccCCCCCCCCCccCCCCccccc-HHHhccCCCCEec
Q 038130 372 GSNNNLYELSLDRSWGGDKQMGLSSPIT-LPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIP-ESIIQLSRLVVLN 448 (526)
Q Consensus 372 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp-~~l~~l~~L~~L~ 448 (526)
.+ ++|+.|+++.| . ...... ..+..+ ++|++|++++|.+.+.+.. .+....++ ..+..+++|+.|+
T Consensus 113 ~l-~~L~~L~l~~N----~---i~~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~--~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 113 KL-VNLRVLYMSNN----K---ITNWGEIDKLAAL-DKLEDLLLAGNPLYNDYKE--NNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HH-HHSSEEEESEE----E---CCCHHHHHHHTTT-TTCSEEEECSCHHHHHHHT--TTTHHHHHHHHHHHCSSCSEEC
T ss_pred cC-CCCCEEECCCC----c---CCchhHHHHHhcC-CCCCEEEecCCcccccccc--ccchHHHHHHHHHhCCCcEEEC
Confidence 33 45555555322 1 000000 001122 3777777777755431000 00001111 2367889999887
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=1e-08 Score=100.21 Aligned_cols=89 Identities=12% Similarity=0.122 Sum_probs=54.8
Q ss_pred cccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcccCcccccCccc-EEEccCCCCCCCCCcc
Q 038130 348 LEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPITLPLDGLHTTLT-SLYLNYCGILELPDSL 426 (526)
Q Consensus 348 l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~~~lp~~l 426 (526)
+++|+ .+++++|.+ ..++...+..+++|+.+.+..| +...+. ..+.++. +|+ .+++.+ .++.++
T Consensus 225 ~~~L~-~l~L~~n~i-~~I~~~aF~~~~~L~~l~l~~n------i~~I~~--~aF~~~~-~L~~~l~l~~-~l~~I~--- 289 (329)
T 3sb4_A 225 MPNLV-SLDISKTNA-TTIPDFTFAQKKYLLKIKLPHN------LKTIGQ--RVFSNCG-RLAGTLELPA-SVTAIE--- 289 (329)
T ss_dssp CTTCC-EEECTTBCC-CEECTTTTTTCTTCCEEECCTT------CCEECT--TTTTTCT-TCCEEEEECT-TCCEEC---
T ss_pred cCCCe-EEECCCCCc-ceecHhhhhCCCCCCEEECCcc------cceehH--HHhhCCh-hccEEEEEcc-cceEEc---
Confidence 55677 888888777 6777776666688888888432 111111 1133333 787 888776 333222
Q ss_pred CCCCcccccHHHhccCCCCEecccCCccCCcCCC
Q 038130 427 EKNNFERIPESIIQLSRLVVLNLNYCERLQSLPK 460 (526)
Q Consensus 427 ~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~ 460 (526)
+..+.++++|+.|++.++ .+..++.
T Consensus 290 --------~~aF~~c~~L~~l~l~~n-~i~~I~~ 314 (329)
T 3sb4_A 290 --------FGAFMGCDNLRYVLATGD-KITTLGD 314 (329)
T ss_dssp --------TTTTTTCTTEEEEEECSS-CCCEECT
T ss_pred --------hhhhhCCccCCEEEeCCC-ccCccch
Confidence 245677888888888765 5555654
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.83 E-value=1.4e-09 Score=106.55 Aligned_cols=233 Identities=12% Similarity=0.086 Sum_probs=115.4
Q ss_pred CcceEEEeccCCCCCCCChhccc-cCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCcccCc-cccC--------C
Q 038130 231 NTLVILNLSEYVSLNSLPAEILH-LEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIEELPS-SIGC--------L 300 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~~-l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~~lp~-~i~~--------L 300 (526)
..++.|.++++-....+ ..+.. +++|++|+|++|........-+.++.++.+.+..+. +|. .|.+ +
T Consensus 25 ~~l~~L~l~g~i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANF---VPAYAFSNVVNGVTKGK 100 (329)
T ss_dssp HHCSEEEEEEEECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTE---ECTTTTEEEETTEEEEC
T ss_pred CceeEEEEeccccHHHH-HHHHHhhccCeEEecCcceeEEecCccccccccccccccccc---cCHHHhccccccccccc
Confidence 35677777763111111 12333 677888888886533100001112223444444442 222 2445 7
Q ss_pred CCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcccccceeecccccc---ccccChhhhcccCCc
Q 038130 301 SRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLEASNSTLYAKGTAA---KREVPSSIVGSNNNL 377 (526)
Q Consensus 301 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~~L~l~~~~~---~~~~~~~l~~~~~~L 377 (526)
++|+.|++.. .....-+..+..+++|+.|++.++.....-+..|.++..+. .+....+.. ...+....+..+..|
T Consensus 101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~-~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAI-FIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEE-EECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceE-EecCcchhhhhcccccccccccccccc
Confidence 7788877776 43332334567777788888777544433344565555444 444333110 011111111111222
Q ss_pred c--------------------------eEEcccCCCCCCCCCCCCCccc-CcccccCcccEEEccCCCCCCCCCccCCCC
Q 038130 378 Y--------------------------ELSLDRSWGGDKQMGLSSPITL-PLDGLHTTLTSLYLNYCGILELPDSLEKNN 430 (526)
Q Consensus 378 ~--------------------------~L~l~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~ 430 (526)
+ .+.+..+ ...... .+...+++|+.|+|++|.++.+|
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~---------l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~------- 242 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK---------LDNADFKLIRDYMPNLVSLDISKTNATTIP------- 242 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC---------CCHHHHHHHHHHCTTCCEEECTTBCCCEEC-------
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeee---------ecHHHHHHHHHhcCCCeEEECCCCCcceec-------
Confidence 2 2222110 000000 01112458889998887655544
Q ss_pred cccccHHHhccCCCCEecccCCccCCcCCCc----ccccc-ccccccccccccCC-----CCCCCCEEeccCC
Q 038130 431 FERIPESIIQLSRLVVLNLNYCERLQSLPKL----PFNLQ-GIFAHHCTALSSIS-----YKSSTQLFDLSDN 493 (526)
Q Consensus 431 l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~----~~~L~-~L~l~~c~~L~~l~-----~~~~L~~L~l~~c 493 (526)
+..+.++++|+.|++.++ ++.++.. .++|+ .+.+.+ .++.++ .+++|+.|++.++
T Consensus 243 ----~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 243 ----DFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp ----TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS
T ss_pred ----HhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC
Confidence 235677888888888775 6666642 34566 666665 444443 4777888877554
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.82 E-value=1e-08 Score=101.12 Aligned_cols=102 Identities=18% Similarity=0.208 Sum_probs=81.5
Q ss_pred EEeeCCCCCCCcCCCCCCCCcccEEEecc-cCCcccC-ccccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCC
Q 038130 259 KLNLLGCSKLKRLPEFSSSGKIEEIWLDG-TAIEELP-SSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCS 336 (526)
Q Consensus 259 ~L~l~~~~~~~~lp~~~~l~~L~~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~ 336 (526)
.+++++++.+..+|.+..+.+|++|+|++ |.++.+| ..|++|++|++|+|++|.+.+..|..+.+|++|++|+|++|.
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 45777754677788888888999999996 9999887 468999999999999998777677778899999999999865
Q ss_pred CCCcCCCc-ccCcccccceeeccccccc
Q 038130 337 NLQRLPDD-FGNLEASNSTLYAKGTAAK 363 (526)
Q Consensus 337 ~~~~lp~~-~~~l~~L~~~L~l~~~~~~ 363 (526)
+..+|.. +..+. |+ .|++.+|.+.
T Consensus 92 -l~~~~~~~~~~~~-L~-~l~l~~N~~~ 116 (347)
T 2ifg_A 92 -LESLSWKTVQGLS-LQ-ELVLSGNPLH 116 (347)
T ss_dssp -CSCCCSTTTCSCC-CC-EEECCSSCCC
T ss_pred -cceeCHHHcccCC-ce-EEEeeCCCcc
Confidence 4556654 44454 88 9999998873
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.79 E-value=1.7e-08 Score=99.38 Aligned_cols=103 Identities=22% Similarity=0.130 Sum_probs=82.8
Q ss_pred eEEEeccCCCCCCCChhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCcccCc-cccCCCCCCEEeccC
Q 038130 234 VILNLSEYVSLNSLPAEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLYLSD 310 (526)
Q Consensus 234 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~ 310 (526)
..++.++++.+..+|. +..+++|++|+|++++.+..+|. |.++.+|++|+|++|.|+.+|. .|++|++|++|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4567777547888999 99999999999997345666663 8999999999999999997765 689999999999999
Q ss_pred CccCcccCcCCCCCCCCcEEeecCCCCC
Q 038130 311 CKRLKSLPSSLSQLKSLKLLNLHGCSNL 338 (526)
Q Consensus 311 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~ 338 (526)
|.+. .+|..+.....|+.|++.+|...
T Consensus 90 N~l~-~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALE-SLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred Cccc-eeCHHHcccCCceEEEeeCCCcc
Confidence 9855 56655444444999999987643
No 150
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=98.74 E-value=2.5e-09 Score=90.51 Aligned_cols=107 Identities=18% Similarity=0.228 Sum_probs=75.9
Q ss_pred CCCCCCCCcEEEecccccccCchHHHHHHHHHh--CCCceEeeC-CcCCCccchHHHHHHhhhceEE-EEecCCccchhh
Q 038130 7 LHFQHNRNDVFLSFKGEDTRDNFTSHLYSALSQ--KCIETFIGN-DLKRGDEISQSLGDAVEVSSIY-IIFSESDASSSW 82 (526)
Q Consensus 7 ~~~~~~~~~~f~s~~~~d~~~~f~~~~~~~l~~--~~~~~~~~~-~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l~~~~ 82 (526)
|......|||||||+++|.- |..++..+|+. .|+++|.++ ++.+|+.|...|.+....+-.+ ++++..++.+.|
T Consensus 4 ~~r~~k~YDvFISy~~~D~~--~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~w 81 (146)
T 3ub2_A 4 SSRWSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPW 81 (146)
T ss_dssp CCTTSSSEEEEEECCGGGHH--HHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHH
T ss_pred CCCCCCcceEEEeCChhhHH--HHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHH
Confidence 34567899999999999964 78899999998 599999888 8999999999999999999999 677788999999
Q ss_pred cHHHHHHHHHHHhhCCCeEEEEE----eeccchhhhh
Q 038130 83 CLDELLKIVECRTNYGQIVVAVC----YRVEPSHVRK 115 (526)
Q Consensus 83 ~~~~w~~i~~~~~~~~~~il~~s----Y~~Lp~~lk~ 115 (526)
+..||..++.+.......++|+- +..+|..|+.
T Consensus 82 c~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~ 118 (146)
T 3ub2_A 82 CKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRF 118 (146)
T ss_dssp HHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGG
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhC
Confidence 99999999987733333677886 4467888873
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.61 E-value=1.3e-09 Score=108.38 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=20.6
Q ss_pred cccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCC
Q 038130 408 TLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYC 452 (526)
Q Consensus 408 ~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~ 452 (526)
+|+.|+|++|.++.. ....++..+...++|++|+|++|
T Consensus 212 ~L~~L~Ls~N~i~~~-------g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 212 QLQELNVAYNGAGDT-------AALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp CCCEEECCSSCCCHH-------HHHHHHHHHHHCSSCCEEECTTS
T ss_pred CcCeEECCCCCCCHH-------HHHHHHHHHHhCCCCCEEeccCC
Confidence 566666666654321 12234444555666777777766
No 152
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=98.60 E-value=1.5e-08 Score=87.09 Aligned_cols=100 Identities=14% Similarity=0.197 Sum_probs=83.8
Q ss_pred CCCCCCcEEEecccccccCchHHHHHHHHHhC--CCceEeeC-CcCCCccchHHHHHHhh-hceEE-EEecCCccchhhc
Q 038130 9 FQHNRNDVFLSFKGEDTRDNFTSHLYSALSQK--CIETFIGN-DLKRGDEISQSLGDAVE-VSSIY-IIFSESDASSSWC 83 (526)
Q Consensus 9 ~~~~~~~~f~s~~~~d~~~~f~~~~~~~l~~~--~~~~~~~~-~l~~~~~i~~~I~~kc~-GlPLa-~~~~g~~l~~~~~ 83 (526)
..+..|||||||+++| +-|+.++..+|... |+.++.++ ++.+|+.+...|.+... ++-.+ ++++..++.+.|+
T Consensus 12 ~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc 89 (160)
T 2js7_A 12 HMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC 89 (160)
T ss_dssp CCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred CCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence 4578999999999999 56999999999985 58999988 89999888888888887 79888 6667888999999
Q ss_pred HHHHHHHHHHH-hhCCCeEEEEEeeccc
Q 038130 84 LDELLKIVECR-TNYGQIVVAVCYRVEP 110 (526)
Q Consensus 84 ~~~w~~i~~~~-~~~~~~il~~sY~~Lp 110 (526)
..||..+++.. ......++|+.|+..+
T Consensus 90 ~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 90 DFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 99999999875 2333469999998764
No 153
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=98.60 E-value=2e-08 Score=87.81 Aligned_cols=102 Identities=17% Similarity=0.236 Sum_probs=83.3
Q ss_pred CCCCCCcEEEecccccccCchHHH-HHHHHHh--CCCceEeeC-CcCCCccchHHHHHHhhhceEE-EEecCCccchhhc
Q 038130 9 FQHNRNDVFLSFKGEDTRDNFTSH-LYSALSQ--KCIETFIGN-DLKRGDEISQSLGDAVEVSSIY-IIFSESDASSSWC 83 (526)
Q Consensus 9 ~~~~~~~~f~s~~~~d~~~~f~~~-~~~~l~~--~~~~~~~~~-~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l~~~~~ 83 (526)
..+..|||||||+++|. -|+.. +..+|+. .|+.++.++ ++.+|+.|...|.+...++-.+ ++++..++.+.|+
T Consensus 31 ~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc 108 (178)
T 2j67_A 31 KRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWC 108 (178)
T ss_dssp CCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGG
T ss_pred CCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchH
Confidence 46778999999999995 68875 9999998 789999998 8999999999999999999999 6667889999999
Q ss_pred HHHHHHHHHHH-hhCCCeEEEEEeeccchh
Q 038130 84 LDELLKIVECR-TNYGQIVVAVCYRVEPSH 112 (526)
Q Consensus 84 ~~~w~~i~~~~-~~~~~~il~~sY~~Lp~~ 112 (526)
..||..++... ....+.++|+.|+..|.+
T Consensus 109 ~~El~~a~~~~~~~~~~~vIpV~~~~i~~~ 138 (178)
T 2j67_A 109 HYEFYFAHHNLFHENSDHIILILLEPIPFY 138 (178)
T ss_dssp GTHHHHTTCC-------CEEEEESSCCCGG
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEecCCChH
Confidence 99999988543 344557999988876653
No 154
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=98.57 E-value=1.1e-08 Score=87.10 Aligned_cols=100 Identities=17% Similarity=0.195 Sum_probs=84.5
Q ss_pred CCCCCcEEEecccccccCchHHH-HHHHHHhC--CCceEeeC-CcCCCccchHHHHHHhhhceEE-EEecCCccchhhcH
Q 038130 10 QHNRNDVFLSFKGEDTRDNFTSH-LYSALSQK--CIETFIGN-DLKRGDEISQSLGDAVEVSSIY-IIFSESDASSSWCL 84 (526)
Q Consensus 10 ~~~~~~~f~s~~~~d~~~~f~~~-~~~~l~~~--~~~~~~~~-~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l~~~~~~ 84 (526)
.+..|||||||+++|. -|..+ +..+|+.. |+.++.++ ++.+|+.+...|.+....+-.+ ++++..++.+.|+.
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 3578999999999997 59886 89999986 89999998 8999999999999999999999 66678889999999
Q ss_pred HHHHHHHHHH-hhCCCeEEEEEeeccch
Q 038130 85 DELLKIVECR-TNYGQIVVAVCYRVEPS 111 (526)
Q Consensus 85 ~~w~~i~~~~-~~~~~~il~~sY~~Lp~ 111 (526)
.||..++... ....+.++|+.|+..|.
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~ 107 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEK 107 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCT
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCCh
Confidence 9998887533 44456789998887654
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.55 E-value=2.4e-06 Score=85.51 Aligned_cols=231 Identities=13% Similarity=0.134 Sum_probs=125.7
Q ss_pred CcceEEEeccCCCCCCCCh-hccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCcccCccccCCCCCCEEe
Q 038130 231 NTLVILNLSEYVSLNSLPA-EILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELPSSIGCLSRLLYLY 307 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~ 307 (526)
..++.+.+..+ +..++. .|.+ .+|+.+.+.. .++.++. |.++.+|+.+++..|.++.+|...-...+|+.+.
T Consensus 135 ~~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~ 209 (401)
T 4fdw_A 135 SQIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVL 209 (401)
T ss_dssp CCCSEEECCTT--CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEE
T ss_pred CCccEEEeCCC--ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEE
Confidence 35666666552 444442 3444 3577777765 3555553 7777778888888777777776544457778877
Q ss_pred ccCCccCccc-CcCCCCCCCCcEEeecCCCCCCcCCC-cccCcccccceeeccccccccccChhhhcccCCcceEEcccC
Q 038130 308 LSDCKRLKSL-PSSLSQLKSLKLLNLHGCSNLQRLPD-DFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRS 385 (526)
Q Consensus 308 L~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 385 (526)
+..+ +..+ ...+.++++|+.+++..+ +..++. .|.+ .+|+ .+.+. +.+ ..++...+..+++|+.+.+..+
T Consensus 210 lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~-~i~lp-~~i-~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 210 LPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGIT-TVKLP-NGV-TNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp CCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCS-EEEEE-TTC-CEECTTTTTTCTTCCEEEEESS
T ss_pred eCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCcc-EEEeC-CCc-cEEChhHhhCCCCCCEEEeCCc
Confidence 7753 3333 345667777888877652 344433 3444 5666 77763 334 5565555555577777777443
Q ss_pred CCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCccccc-HHHhccCCCCEecccCCccCCcCCCc-c-
Q 038130 386 WGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIP-ESIIQLSRLVVLNLNYCERLQSLPKL-P- 462 (526)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~~-~- 462 (526)
..........+ ...+.++. +|+.+++.+ +++.++ ..+.++++|+.+.|..+ +..++.. +
T Consensus 282 ~~~~~~~~~I~--~~aF~~c~-~L~~l~l~~-------------~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~ 343 (401)
T 4fdw_A 282 TFNDDPEAMIH--PYCLEGCP-KLARFEIPE-------------SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFN 343 (401)
T ss_dssp CCCCCTTCEEC--TTTTTTCT-TCCEECCCT-------------TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSS
T ss_pred cccCCcccEEC--HHHhhCCc-cCCeEEeCC-------------ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCC
Confidence 11100000011 11132333 777777763 233333 34566777777777543 4444421 1
Q ss_pred -ccccccccccccccccCC-----CC-CCCCEEeccCC
Q 038130 463 -FNLQGIFAHHCTALSSIS-----YK-SSTQLFDLSDN 493 (526)
Q Consensus 463 -~~L~~L~l~~c~~L~~l~-----~~-~~L~~L~l~~c 493 (526)
.+|+.+.+.+... ..+. .+ ..++.|.+-.+
T Consensus 344 ~~~L~~l~l~~n~~-~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 344 NTGIKEVKVEGTTP-PQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp SSCCCEEEECCSSC-CBCCCSSCCCSCTTCCEEEECGG
T ss_pred CCCCCEEEEcCCCC-cccccccccCCCCCccEEEeCHH
Confidence 1566666655321 1111 23 35666766543
No 156
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=98.50 E-value=1.5e-07 Score=80.84 Aligned_cols=100 Identities=17% Similarity=0.226 Sum_probs=84.3
Q ss_pred CCcEEEecccccc---------cCchHHHHHH-HHH-hCCCceEeeC-CcCCCccchHHHHHHhhhceEE-EEecCCcc-
Q 038130 13 RNDVFLSFKGEDT---------RDNFTSHLYS-ALS-QKCIETFIGN-DLKRGDEISQSLGDAVEVSSIY-IIFSESDA- 78 (526)
Q Consensus 13 ~~~~f~s~~~~d~---------~~~f~~~~~~-~l~-~~~~~~~~~~-~l~~~~~i~~~I~~kc~GlPLa-~~~~g~~l- 78 (526)
+|||||||+++|. .+.|+.++.. +|+ +.|++++.++ ++.+|+.|...|.+....+-.. ++++..++
T Consensus 2 ~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~ 81 (159)
T 1t3g_A 2 DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVV 81 (159)
T ss_dssp CBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHH
T ss_pred CceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhh
Confidence 6999999999996 2458888665 588 6899999998 8999999999999999999999 56667886
Q ss_pred chhhcHHHHHHHHHHH-hhCCCeEEEEEeeccchh
Q 038130 79 SSSWCLDELLKIVECR-TNYGQIVVAVCYRVEPSH 112 (526)
Q Consensus 79 ~~~~~~~~w~~i~~~~-~~~~~~il~~sY~~Lp~~ 112 (526)
.+.|+..||..++.+. ....+.++++-|...+..
T Consensus 82 ~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~~ 116 (159)
T 1t3g_A 82 RRGWSIFELETRLRNMLVTGEIKVILIECSELRGI 116 (159)
T ss_dssp TTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCSH
T ss_pred cChHHHHHHHHHHHHHHhcCCCEEEEEEecccccc
Confidence 8999999999999876 555678999988887753
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.44 E-value=6.4e-08 Score=95.37 Aligned_cols=39 Identities=10% Similarity=0.250 Sum_probs=23.9
Q ss_pred CcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCC
Q 038130 407 TTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYC 452 (526)
Q Consensus 407 ~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~ 452 (526)
++|++|+|+.|.+.. .....++..+..+++|+.|+|++|
T Consensus 279 ~~L~~LdLs~n~L~d-------~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 279 PQLETMDISAGVLTD-------EGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGCSEEECCSSCCBH-------HHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCEEECCCCCCCh-------HHHHHHHhhcccCCcceEEECCCC
Confidence 377777777765432 122234445556777888888777
No 158
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.44 E-value=9.3e-09 Score=102.12 Aligned_cols=131 Identities=16% Similarity=0.058 Sum_probs=63.6
Q ss_pred CcceEEEeccCCCCCCCChhcc-----ccCCCcEEeeCCCCCCCc-CCCC-CCCCcccEEEecccCCccc-----Cccc-
Q 038130 231 NTLVILNLSEYVSLNSLPAEIL-----HLEFLKKLNLLGCSKLKR-LPEF-SSSGKIEEIWLDGTAIEEL-----PSSI- 297 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp~~~~-----~l~~L~~L~l~~~~~~~~-lp~~-~~l~~L~~L~L~~~~i~~l-----p~~i- 297 (526)
..++.|++++|.....-...+. ..++|++|+|++|..... +..+ ..+.+|+.|+|++|.++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4567777777543221111122 125677777777643211 1111 2344566777776666521 1112
Q ss_pred cCCCCCCEEeccCCccCc----ccCcCCCCCCCCcEEeecCCCCCC----cCCCcccCcccccceeecccccc
Q 038130 298 GCLSRLLYLYLSDCKRLK----SLPSSLSQLKSLKLLNLHGCSNLQ----RLPDDFGNLEASNSTLYAKGTAA 362 (526)
Q Consensus 298 ~~L~~L~~L~L~~~~~~~----~lp~~i~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~~L~l~~~~~ 362 (526)
...++|++|+|++|.+.. .++..+..+++|++|++++|.... .++..+...+.|+ .|++++|.+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~-~L~Ls~N~i 223 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQ-ELNVAYNGA 223 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCC-EEECCSSCC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcC-eEECCCCCC
Confidence 234566667766665322 233334456666666666654221 1123334444555 555555555
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.38 E-value=1.6e-07 Score=81.54 Aligned_cols=97 Identities=13% Similarity=0.213 Sum_probs=73.1
Q ss_pred cccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEecccCCccCCc-----CCCc---ccccccccccccccccc-
Q 038130 408 TLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLNYCERLQS-----LPKL---PFNLQGIFAHHCTALSS- 478 (526)
Q Consensus 408 ~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~-----lp~~---~~~L~~L~l~~c~~L~~- 478 (526)
.|+.|++++|.++. ..+. .+.++++|++|+|++|..++. +... .++|++|++++|+.++.
T Consensus 62 ~L~~LDLs~~~Itd-------~GL~----~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 62 KIQAIDATDSCIMS-------IGFD----HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CEEEEEEESCCCCG-------GGGG----GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred eEeEEeCcCCCccH-------HHHH----HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 78999999987543 1222 345789999999999976543 2232 24799999999987765
Q ss_pred ----CCCCCCCCEEeccCCCCCCHHH-HHHHHHHHHhhhHHh
Q 038130 479 ----ISYKSSTQLFDLSDNFKLDRNA-VRIIVEDALQDIQLM 515 (526)
Q Consensus 479 ----l~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~~~~~~~~ 515 (526)
+..+++|++|+|++|+.++... ....++.++|+++|.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~ 172 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEEE
T ss_pred HHHHHhcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEEE
Confidence 4579999999999999999876 455677788887764
No 160
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.37 E-value=7.4e-06 Score=81.96 Aligned_cols=207 Identities=15% Similarity=0.163 Sum_probs=139.1
Q ss_pred CcceEEEeccCCCCCCCC-hhccccCCCcEEeeCCCCCCCcCCC-CCCCCcccEEEecccCCcccCc-cccCCCCCCEEe
Q 038130 231 NTLVILNLSEYVSLNSLP-AEILHLEFLKKLNLLGCSKLKRLPE-FSSSGKIEEIWLDGTAIEELPS-SIGCLSRLLYLY 307 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~ 307 (526)
..++.+.+.+ .+..++ ..|.+|++|+.+++++| .+..++. .....+|+.+.+..+ ++.++. .|.++.+|+.++
T Consensus 157 ~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 157 STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEE
T ss_pred CCceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEe
Confidence 4678888875 344444 56888999999999985 4666664 333688999999854 776654 588999999999
Q ss_pred ccCCccCcccCc-CCCCCCCCcEEeecCCCCCCcC-CCcccCcccccceeeccccccc----cccChhhhcccCCcceEE
Q 038130 308 LSDCKRLKSLPS-SLSQLKSLKLLNLHGCSNLQRL-PDDFGNLEASNSTLYAKGTAAK----REVPSSIVGSNNNLYELS 381 (526)
Q Consensus 308 L~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~~L~l~~~~~~----~~~~~~l~~~~~~L~~L~ 381 (526)
+..+ +..++. .+.+ .+|+.+.+.+ .+..+ +..|.++++|+ .+.+.++.+. ..++...+..+++|+.+.
T Consensus 233 l~~~--l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~-~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~ 306 (401)
T 4fdw_A 233 IPEN--VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELA-EVTTYGSTFNDDPEAMIHPYCLEGCPKLARFE 306 (401)
T ss_dssp CCTT--CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCC-EEEEESSCCCCCTTCEECTTTTTTCTTCCEEC
T ss_pred cCCC--ccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCC-EEEeCCccccCCcccEECHHHhhCCccCCeEE
Confidence 9874 445554 3444 7899999965 24555 45688999999 9999887652 246777677779999999
Q ss_pred cccCCCCCCCCCCCCCcccCcccccCcccEEEccCCCCCCCCCccCCCCccccc-HHHhccCCCCEecccCCccCCcCCC
Q 038130 382 LDRSWGGDKQMGLSSPITLPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIP-ESIIQLSRLVVLNLNYCERLQSLPK 460 (526)
Q Consensus 382 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~ 460 (526)
+..+ +...+. ..+.++. +|+.+.|..+ ++.++ ..+.++ +|+.|.+.++. ...++.
T Consensus 307 l~~~------i~~I~~--~aF~~c~-~L~~l~lp~~-------------l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~~ 362 (401)
T 4fdw_A 307 IPES------IRILGQ--GLLGGNR-KVTQLTIPAN-------------VTQINFSAFNNT-GIKEVKVEGTT-PPQVFE 362 (401)
T ss_dssp CCTT------CCEECT--TTTTTCC-SCCEEEECTT-------------CCEECTTSSSSS-CCCEEEECCSS-CCBCCC
T ss_pred eCCc------eEEEhh--hhhcCCC-CccEEEECcc-------------ccEEcHHhCCCC-CCCEEEEcCCC-Cccccc
Confidence 8421 111111 1133433 8999998653 33343 356678 99999999873 333332
Q ss_pred -----ccccccccccc
Q 038130 461 -----LPFNLQGIFAH 471 (526)
Q Consensus 461 -----~~~~L~~L~l~ 471 (526)
.+.+++.|++.
T Consensus 363 ~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 363 KVWYGFPDDITVIRVP 378 (401)
T ss_dssp SSCCCSCTTCCEEEEC
T ss_pred ccccCCCCCccEEEeC
Confidence 22345555554
No 161
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.21 E-value=1.5e-06 Score=85.47 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=28.8
Q ss_pred CChhccccCCCcEEeeCCCCCCCcCCCCCCCCcccEEEecccCCc-ccCcccc--CCCCCCEEecc
Q 038130 247 LPAEILHLEFLKKLNLLGCSKLKRLPEFSSSGKIEEIWLDGTAIE-ELPSSIG--CLSRLLYLYLS 309 (526)
Q Consensus 247 lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~L~~~~i~-~lp~~i~--~L~~L~~L~L~ 309 (526)
+...+..+++|+.|.+++|... .++.+ .+++|+.|++..+.+. .....+. .+++|++|+|+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 3344455566666666665322 22332 2555666666555443 1111122 45556666553
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.73 E-value=7.3e-06 Score=76.58 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=47.6
Q ss_pred cCCCCCCEEeccCCccCc--ccCcCCCCCCCCcEEeecCCCCCCcCCCcccCcc--cccceeeccccccccccCh-----
Q 038130 298 GCLSRLLYLYLSDCKRLK--SLPSSLSQLKSLKLLNLHGCSNLQRLPDDFGNLE--ASNSTLYAKGTAAKREVPS----- 368 (526)
Q Consensus 298 ~~L~~L~~L~L~~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~--~L~~~L~l~~~~~~~~~~~----- 368 (526)
.++++|+.|+|++|.+.+ .+|..+..+++|++|+|++|... .+ ..+..+. .|+ .|++++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~-~~l~~l~~l~L~-~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SE-RELDKIKGLKLE-ELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SG-GGGGGGTTSCCS-EEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-Cc-hhhhhcccCCcc-eEEccCCcCccccCcchhHH
Confidence 456677777777766544 34444556777777777765433 22 2233333 677 777777777555542
Q ss_pred -hhhcccCCcceEEc
Q 038130 369 -SIVGSNNNLYELSL 382 (526)
Q Consensus 369 -~l~~~~~~L~~L~l 382 (526)
.+...+++|+.|+-
T Consensus 244 ~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHCTTCCEESS
T ss_pred HHHHHHCcccCeECC
Confidence 23334477777764
No 163
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.66 E-value=7.6e-06 Score=72.46 Aligned_cols=111 Identities=14% Similarity=0.020 Sum_probs=56.7
Q ss_pred ccccCCCcEEeeCCCCCCCc-----CC-CCCCCCcccEEEecccCCc-----ccCccccCCCCCCEEeccCCccCcc---
Q 038130 251 ILHLEFLKKLNLLGCSKLKR-----LP-EFSSSGKIEEIWLDGTAIE-----ELPSSIGCLSRLLYLYLSDCKRLKS--- 316 (526)
Q Consensus 251 ~~~l~~L~~L~l~~~~~~~~-----lp-~~~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~--- 316 (526)
+...+.|++|+|++|..+.. +. .+....+|++|+|++|.|. .+...+...++|++|+|++|.+...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 34456666666666522222 11 1344555666666666665 2334455556677777777654321
Q ss_pred -cCcCCCCCCCCcEEee--cCCCCCCc----CCCcccCcccccceeecccccc
Q 038130 317 -LPSSLSQLKSLKLLNL--HGCSNLQR----LPDDFGNLEASNSTLYAKGTAA 362 (526)
Q Consensus 317 -lp~~i~~l~~L~~L~l--~~~~~~~~----lp~~~~~l~~L~~~L~l~~~~~ 362 (526)
+...+...++|++|++ ++|..... +...+...+.|+ .|++++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~-~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLL-KFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCC-EEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcC-EEeccCCCC
Confidence 3444555666777777 44433221 122233334555 666666554
No 164
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.64 E-value=9.5e-06 Score=70.33 Aligned_cols=83 Identities=19% Similarity=0.208 Sum_probs=43.4
Q ss_pred CCcccEEEecccCCcc-cCccccCCCCCCEEeccCCccCcc-cCcCCCCC----CCCcEEeecCCCCCCcC-CCcccCcc
Q 038130 277 SGKIEEIWLDGTAIEE-LPSSIGCLSRLLYLYLSDCKRLKS-LPSSLSQL----KSLKLLNLHGCSNLQRL-PDDFGNLE 349 (526)
Q Consensus 277 l~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~L~~~~~~~~-lp~~i~~l----~~L~~L~l~~~~~~~~l-p~~~~~l~ 349 (526)
-..|+.|+++++.|+. --..+.++++|++|+|++|..++. --..++.+ ++|++|++++|..++.- -..+.+++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3457778888777662 123356677777777777753321 11113332 35667777766544331 01233444
Q ss_pred cccceeecccc
Q 038130 350 ASNSTLYAKGT 360 (526)
Q Consensus 350 ~L~~~L~l~~~ 360 (526)
+|+ .|++++|
T Consensus 140 ~L~-~L~L~~c 149 (176)
T 3e4g_A 140 NLK-YLFLSDL 149 (176)
T ss_dssp TCC-EEEEESC
T ss_pred CCC-EEECCCC
Confidence 555 5555554
No 165
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.64 E-value=2.7e-05 Score=72.74 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=40.0
Q ss_pred ccCCCcEEeeCCCCCCCcCC---C-CCCCCcccEEEecccCCcccCccccCCC--CCCEEeccCCccCcccCc-------
Q 038130 253 HLEFLKKLNLLGCSKLKRLP---E-FSSSGKIEEIWLDGTAIEELPSSIGCLS--RLLYLYLSDCKRLKSLPS------- 319 (526)
Q Consensus 253 ~l~~L~~L~l~~~~~~~~lp---~-~~~l~~L~~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~~~~~~lp~------- 319 (526)
++++|++|+|++|. +..++ . +..+++|+.|+|++|.|+.+ ..+..+. +|++|+|++|.+.+.+|.
T Consensus 168 ~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45666666666654 33322 2 23556666666666666544 2233333 666666666655444442
Q ss_pred CCCCCCCCcEEe
Q 038130 320 SLSQLKSLKLLN 331 (526)
Q Consensus 320 ~i~~l~~L~~L~ 331 (526)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 134455555554
No 166
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.54 E-value=2.4e-05 Score=69.14 Aligned_cols=88 Identities=14% Similarity=0.105 Sum_probs=46.7
Q ss_pred CCCCCcccEEEeccc-CCc-----ccCccccCCCCCCEEeccCCccCc----ccCcCCCCCCCCcEEeecCCCCCCc---
Q 038130 274 FSSSGKIEEIWLDGT-AIE-----ELPSSIGCLSRLLYLYLSDCKRLK----SLPSSLSQLKSLKLLNLHGCSNLQR--- 340 (526)
Q Consensus 274 ~~~l~~L~~L~L~~~-~i~-----~lp~~i~~L~~L~~L~L~~~~~~~----~lp~~i~~l~~L~~L~l~~~~~~~~--- 340 (526)
+...+.|+.|+|++| .+. .+...+...++|++|+|++|.+.. .+...+...++|++|++++|.....
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344566777777766 665 234445556677777777765432 1223334455666666666543221
Q ss_pred -CCCcccCcccccceeec--ccccc
Q 038130 341 -LPDDFGNLEASNSTLYA--KGTAA 362 (526)
Q Consensus 341 -lp~~~~~l~~L~~~L~l--~~~~~ 362 (526)
+...+...+.|+ .|++ ++|.+
T Consensus 112 ~l~~~L~~n~~L~-~L~L~~~~N~i 135 (185)
T 1io0_A 112 ALVEALQSNTSLI-ELRIDNQSQPL 135 (185)
T ss_dssp HHHHGGGGCSSCC-EEECCCCSSCC
T ss_pred HHHHHHHhCCCce-EEEecCCCCCC
Confidence 223344444555 5555 44554
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.23 E-value=0.0058 Score=60.72 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=50.6
Q ss_pred hccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEecccCCcccC-ccccCCCCCCEEeccCCccCcccCcCCCCCCC
Q 038130 250 EILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWLDGTAIEELP-SSIGCLSRLLYLYLSDCKRLKSLPSSLSQLKS 326 (526)
Q Consensus 250 ~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~ 326 (526)
.|.++++|+.+.+.++ ...++. |.++.+|+.+.+..+ ++.++ ..+.++..|+.+.+..+. ..+........+
T Consensus 157 aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~~~~~~~ 231 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL--YYLGDFALSKTG 231 (394)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC--CEECTTTTTTCC
T ss_pred hhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc--eEeehhhcccCC
Confidence 4556677777777542 333432 566666666666544 33333 235566666666655431 222233334455
Q ss_pred CcEEeecCCCCCCcCC-CcccCcccccceeecccc
Q 038130 327 LKLLNLHGCSNLQRLP-DDFGNLEASNSTLYAKGT 360 (526)
Q Consensus 327 L~~L~l~~~~~~~~lp-~~~~~l~~L~~~L~l~~~ 360 (526)
|+.+.+... ...+. ..+..+..++ .+.+..+
T Consensus 232 l~~i~ip~~--~~~i~~~~f~~~~~l~-~~~~~~~ 263 (394)
T 4fs7_A 232 VKNIIIPDS--FTELGKSVFYGCTDLE-SISIQNN 263 (394)
T ss_dssp CCEEEECTT--CCEECSSTTTTCSSCC-EEEECCT
T ss_pred CceEEECCC--ceecccccccccccce-eEEcCCC
Confidence 666655431 12221 2344455555 5555443
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.10 E-value=0.016 Score=57.51 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=25.3
Q ss_pred CcceEEEeccCCCCCCCC-hhccccCCCcEEeeCCCCCCCcCCC--CCCCCcccEEEe
Q 038130 231 NTLVILNLSEYVSLNSLP-AEILHLEFLKKLNLLGCSKLKRLPE--FSSSGKIEEIWL 285 (526)
Q Consensus 231 ~~l~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~--~~~l~~L~~L~L 285 (526)
.+++.+.+.. .++.++ .+|.+|.+|+.+++..+ ++.++. +.++..|+.+.+
T Consensus 71 ~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~ 124 (394)
T 4fs7_A 71 RKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILL 124 (394)
T ss_dssp TTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred CCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcc
Confidence 3455666543 233333 34556667777766542 333432 445555544433
No 169
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.78 E-value=0.057 Score=53.43 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=34.1
Q ss_pred CcccccH-HHhccCCCCEecccCCccCCcCCCc----cccccccccccccccccCC-----CCCCCCEEeccCC
Q 038130 430 NFERIPE-SIIQLSRLVVLNLNYCERLQSLPKL----PFNLQGIFAHHCTALSSIS-----YKSSTQLFDLSDN 493 (526)
Q Consensus 430 ~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~----~~~L~~L~l~~c~~L~~l~-----~~~~L~~L~l~~c 493 (526)
.++.++. .+.++.+|+.+.|..+ ++.+... ..+|+.+.+.+ +++.++ ++.+|+.+++.++
T Consensus 298 ~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 298 RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence 3444442 4566778888877643 4444431 24566666632 233332 4778888888765
No 170
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.11 E-value=0.16 Score=50.20 Aligned_cols=14 Identities=7% Similarity=-0.009 Sum_probs=6.6
Q ss_pred HhccCCCCEecccC
Q 038130 438 IIQLSRLVVLNLNY 451 (526)
Q Consensus 438 l~~l~~L~~L~L~~ 451 (526)
+.++++|+.+++.+
T Consensus 353 F~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 353 FSNCTALNNIEYSG 366 (394)
T ss_dssp GTTCTTCCEEEESS
T ss_pred hhCCCCCCEEEECC
Confidence 34444555554444
No 171
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.83 E-value=0.67 Score=45.18 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=47.6
Q ss_pred CCCCCCCcEEeecCCCCCCcCC-CcccCcccccceeeccccccccccChhhhcccCCcceEEcccCCCCCCCCCCCCCcc
Q 038130 321 LSQLKSLKLLNLHGCSNLQRLP-DDFGNLEASNSTLYAKGTAAKREVPSSIVGSNNNLYELSLDRSWGGDKQMGLSSPIT 399 (526)
Q Consensus 321 i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 399 (526)
+....+|+.+.+... +..++ ..+.++..|+ .+.+..+ + ..+....+..+.+|+.+.+..+ +...+.
T Consensus 213 f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~-~i~lp~~-v-~~I~~~aF~~~~~l~~i~l~~~------i~~i~~-- 279 (379)
T 4h09_A 213 FSYGKNLKKITITSG--VTTLGDGAFYGMKALD-EIAIPKN-V-TSIGSFLLQNCTALKTLNFYAK------VKTVPY-- 279 (379)
T ss_dssp TTTCSSCSEEECCTT--CCEECTTTTTTCSSCC-EEEECTT-C-CEECTTTTTTCTTCCEEEECCC------CSEECT--
T ss_pred cccccccceeeeccc--eeEEccccccCCccce-EEEcCCC-c-cEeCccccceeehhcccccccc------ceeccc--
Confidence 344555666555431 22222 2345555555 5555443 2 3344444444466666666211 000000
Q ss_pred cCcccccCcccEEEccCCCCCCCCCccCCCCcccccHHHhccCCCCEeccc
Q 038130 400 LPLDGLHTTLTSLYLNYCGILELPDSLEKNNFERIPESIIQLSRLVVLNLN 450 (526)
Q Consensus 400 ~~~~~~~~~L~~L~L~~~~~~~lp~~l~~~~l~~lp~~l~~l~~L~~L~L~ 450 (526)
..+.+. ++|+.+.+.++.++.++ ...+.++.+|+.+.|.
T Consensus 280 ~aF~~c-~~L~~i~l~~~~i~~I~-----------~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 280 LLCSGC-SNLTKVVMDNSAIETLE-----------PRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTTTC-TTCCEEEECCTTCCEEC-----------TTTTTTCTTCCEEECC
T ss_pred cccccc-cccccccccccccceeh-----------hhhhcCCCCCCEEEcC
Confidence 012222 36777776655433322 1345566666666664
No 172
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.57 E-value=0.2 Score=49.11 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=37.6
Q ss_pred ccCCCCCCEEeccCCccCcccCcCCCCCCCCcEEeecCCCCCCcCC-CcccCcccccceeeccccccccccChhhhcccC
Q 038130 297 IGCLSRLLYLYLSDCKRLKSLPSSLSQLKSLKLLNLHGCSNLQRLP-DDFGNLEASNSTLYAKGTAAKREVPSSIVGSNN 375 (526)
Q Consensus 297 i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~~L~l~~~~~~~~~~~~l~~~~~ 375 (526)
+....+|+.+.+..+ ....-...+..+.+|+.+.+..+ +..+. ..+.++..|+ .+.+..+ + ..++...+..++
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~-~i~l~~~-i-~~i~~~aF~~c~ 286 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALK-TLNFYAK-V-KTVPYLLCSGCS 286 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCC-EEEECCC-C-SEECTTTTTTCT
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhc-ccccccc-c-eecccccccccc
Confidence 444555666655442 12222233445556666666442 22222 2344555555 5555332 2 344444444446
Q ss_pred CcceEEc
Q 038130 376 NLYELSL 382 (526)
Q Consensus 376 ~L~~L~l 382 (526)
+|+.+.+
T Consensus 287 ~L~~i~l 293 (379)
T 4h09_A 287 NLTKVVM 293 (379)
T ss_dssp TCCEEEE
T ss_pred ccccccc
Confidence 6666665
No 173
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.90 E-value=0.042 Score=44.90 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=13.5
Q ss_pred CCCEEeccCCccCcccCc-CCCCCCCCcEEeecCC
Q 038130 302 RLLYLYLSDCKRLKSLPS-SLSQLKSLKLLNLHGC 335 (526)
Q Consensus 302 ~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~ 335 (526)
+|++|+|++|.+. .+|. .+..+++|++|+|.+|
T Consensus 32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCC-ccChhhhhhccccCEEEecCC
Confidence 3444444444422 2222 2334444444444443
No 174
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.71 E-value=0.33 Score=39.44 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=12.5
Q ss_pred eeeccccccccccChhhhcccCCcceEEcc
Q 038130 354 TLYAKGTAAKREVPSSIVGSNNNLYELSLD 383 (526)
Q Consensus 354 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~ 383 (526)
.|+|++|.+ ..++...+..+++|+.|+|.
T Consensus 35 ~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~ 63 (130)
T 3rfe_A 35 ELVLTGNNL-TALPPGLLDALPALRTAHLG 63 (130)
T ss_dssp EEECTTSCC-SSCCTTTGGGCTTCCEEECC
T ss_pred EEECCCCcC-CccChhhhhhccccCEEEec
Confidence 444444444 44444333333444444443
No 175
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.84 E-value=0.089 Score=46.19 Aligned_cols=82 Identities=22% Similarity=0.131 Sum_probs=44.4
Q ss_pred ccCCCcEEeeCCCCCCCc-----CC-CCCCCCcccEEEecccCCc-----ccCccccCCCCCCEEeccCCccCc----cc
Q 038130 253 HLEFLKKLNLLGCSKLKR-----LP-EFSSSGKIEEIWLDGTAIE-----ELPSSIGCLSRLLYLYLSDCKRLK----SL 317 (526)
Q Consensus 253 ~l~~L~~L~l~~~~~~~~-----lp-~~~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~----~l 317 (526)
+-+.|+.|+|++++.+.. +. .+..-..|+.|+|++|.|. .+-..+..-+.|++|+|++|.+.. .+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 345677888876433332 11 1444556777777777765 223334444667777777765432 12
Q ss_pred CcCCCCCCCCcEEeecC
Q 038130 318 PSSLSQLKSLKLLNLHG 334 (526)
Q Consensus 318 p~~i~~l~~L~~L~l~~ 334 (526)
-+.+..-+.|++|++++
T Consensus 119 a~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHTTTTCCCSEEECCC
T ss_pred HHHHhhCCceeEEECCC
Confidence 23344444566666654
No 176
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.79 E-value=0.12 Score=45.30 Aligned_cols=105 Identities=12% Similarity=0.138 Sum_probs=58.6
Q ss_pred cCcceEEEeccCCCCCC-----CChhccccCCCcEEeeCCCCCCCc----CCC-CCCCCcccEEEecccCCc-----ccC
Q 038130 230 VNTLVILNLSEYVSLNS-----LPAEILHLEFLKKLNLLGCSKLKR----LPE-FSSSGKIEEIWLDGTAIE-----ELP 294 (526)
Q Consensus 230 ~~~l~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~~~----lp~-~~~l~~L~~L~L~~~~i~-----~lp 294 (526)
...++.|++++++.+.. +-..+..-..|+.|+|++|..... +.. +..-..|+.|+|++|.|+ .+-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 35678888876433321 233445556788888887653221 111 334566788888888876 233
Q ss_pred ccccCCCCCCEEeccCCcc--Cc-----ccCcCCCCCCCCcEEeecC
Q 038130 295 SSIGCLSRLLYLYLSDCKR--LK-----SLPSSLSQLKSLKLLNLHG 334 (526)
Q Consensus 295 ~~i~~L~~L~~L~L~~~~~--~~-----~lp~~i~~l~~L~~L~l~~ 334 (526)
..+..-+.|++|+|++|.. .+ .+...+..-+.|..|+++.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 4455556688888875421 11 1222333445666666654
No 177
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=31.15 E-value=15 Score=28.47 Aligned_cols=80 Identities=13% Similarity=0.155 Sum_probs=40.9
Q ss_pred CCCcEEEecccccccCchHHHHHHHHHhCCCceEeeCCcCCCccchHHHHHHhhhceEEEEecCCccc-hhhcHHHHHHH
Q 038130 12 NRNDVFLSFKGEDTRDNFTSHLYSALSQKCIETFIGNDLKRGDEISQSLGDAVEVSSIYIIFSESDAS-SSWCLDELLKI 90 (526)
Q Consensus 12 ~~~~~f~s~~~~d~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~I~~kc~GlPLa~~~~g~~l~-~~~~~~~w~~i 90 (526)
-+|.+||||..+|..+.|...+ ...++ -|.| ++.+|.-..++.+|.... ++|...| |
T Consensus 3 ~~~~lFISh~~~d~~~~L~~~l----~~~~f-~~~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~E---I 60 (111)
T 1eiw_A 3 AEIRLYITEGEVEDYRVFLERL----EQSGL-EWRP--------------ATPEDADAVIVLAGLWGTRRDEILGA---V 60 (111)
T ss_dssp CCEEEEECCCCSHHHHHHHHHH----HHHCS-CEEE--------------CCSSSCSEEEEEGGGTTTSHHHHHHH---H
T ss_pred ceEEEEEecccHhHHHHHHHHH----hCCCC-eeec--------------CccccCCEEEEEeCCCcCCChHHHHH---H
Confidence 4689999999999322233332 23333 2444 334455556677776663 3333222 2
Q ss_pred HHHHhhCCCeEEEE-Ee--eccchhhh
Q 038130 91 VECRTNYGQIVVAV-CY--RVEPSHVR 114 (526)
Q Consensus 91 ~~~~~~~~~~il~~-sY--~~Lp~~lk 114 (526)
....+ ....|+-+ -| +.+|..++
T Consensus 61 ~~A~~-~gkpIigV~~~g~~~~P~~l~ 86 (111)
T 1eiw_A 61 DLARK-SSKPIITVRPYGLENVPPELE 86 (111)
T ss_dssp HHHTT-TTCCEEEECCSSSSCCCTTHH
T ss_pred HHHHH-cCCCEEEEEcCCCCcCCHHHH
Confidence 22222 33345544 22 35677766
Done!