BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038131
(654 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 11/117 (9%)
Query: 23 GSTPLHIAAGLGNVSMCKCI--ATADPRLIGERNHENETPFFLAALHGHKDAFLCLHYLC 80
G TPLH+AA G++ + K + A AD + ++ TP LAA +GH + L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 81 ASVDDGYTYSRRNEGDTVLHCAISGDYFDLAFQIIHRCEKLVNSVNEQGVSPLHLLA 137
A V+ ++ G T LH A + ++ +++ VN+ ++ G +PLHL A
Sbjct: 59 ADVN-----AKDKNGRTPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAA 109
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCI--ATADPRLIGERNHENETPFFLAALHGHKDAFLCLH 77
D+ G TPLH+AA G++ + K + A AD + ++ TP LAA +GH + L
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Query: 78 YLCASVDDGYTYSRRNEGDTVLHCAISGDYFDL 110
A V+ ++ G T LH A + ++
Sbjct: 89 EAGADVN-----AKDKNGRTPLHLAARNGHLEV 116
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 364 TPILIAAKNGITEIVEKILESFPVAIHDINSEKKN---IVLLAVENRQPHVYQLLLKTTI 420
TP+ +AA+NG E+V+ +LE A D+N++ KN + LA N V +LLL+
Sbjct: 4 TPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-- 57
Query: 421 MKDSVFRKVDDQGNSALHLAATLG 444
+ D G + LHLAA G
Sbjct: 58 --GADVNAKDKNGRTPLHLAARNG 79
Score = 32.0 bits (71), Expect = 0.98, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 364 TPILIAAKNGITEIVEKILESFPVAIHDINSEKKN---IVLLAVENRQPHVYQLLLK 417
TP+ +AA+NG E+V+ +LE A D+N++ KN + LA N V +LLL+
Sbjct: 70 TPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
Query: 17 KIGDERGSTPLHIAAGLG-----NVSMCKCIATADPRLIGERNHENETPFFLAALHGHKD 71
++ D RG+TPLH+A G V C ++ N+ T LA++HG
Sbjct: 72 ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG--- 128
Query: 72 AFLCLHYLCASVDDGYTYSRRNEGDTVLHCAISGDYFDLAFQIIHRCEKLVNSVNEQGVS 131
+L + L S+ G T LH A+ DL ++ +C VN V QG S
Sbjct: 129 -YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV-SLLLKCGADVNRVTYQGYS 186
Query: 132 PLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSYD 172
P L +P+ R LG T + + + + ++E SYD
Sbjct: 187 PYQLTWGRPST-RIQQQLGQLT--LENLQMLPESEDEESYD 224
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 17 KIGDERGSTPLHIAAGLG-----NVSMCKCIATADPRLIGERNHENETPFFLAALHGHKD 71
++ D RG+TPLH+A G V C ++ N+ T LA++HG
Sbjct: 69 ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG--- 125
Query: 72 AFLCLHYLCASVDDGYTYSRRNEGDTVLHCAISGDYFDLAFQIIHRCEKLVNSVNEQGVS 131
+L + L S+ G T LH A+ DL ++ +C VN V QG S
Sbjct: 126 -YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL-VSLLLKCGADVNRVTYQGYS 183
Query: 132 PLHLLATKPN 141
P L +P+
Sbjct: 184 PYQLTWGRPS 193
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 11/118 (9%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGHKDAFLCLH 77
D G TPLH+AA G+ + K + + ADP ++ + +TP LAA +GHK+ L
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQGADP---NAKDSDGKTPLHLAAENGHKEVVKLL- 89
Query: 78 YLCASVDDGYTYSRRNEGDTVLHCAISGDYFDLAFQIIHRCEKLVNSVNEQGVSPLHL 135
L D ++ ++G T LH A + ++ ++ + N+ + G +PL L
Sbjct: 90 -LSQGADPN---AKDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNTSDSDGRTPLDL 142
Score = 35.4 bits (80), Expect = 0.096, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 363 ETPILIAAKNGITEIVEKILESFPVAIHDINSEKKNIVLLAVENRQPHVYQLLLKTTIMK 422
+TP+ +AA+NG E+V K+L S + +S+ K + LA EN V +LLL
Sbjct: 38 KTPLHLAAENGHKEVV-KLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP 96
Query: 423 DSVFRKVDDQGNSALHLAATLGDHK 447
++ D G + LHLAA G HK
Sbjct: 97 NA----KDSDGKTPLHLAAENG-HK 116
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 50 IGERNHENETPFFLAALHGHKDAFLCLHYLCASVDDGYTYSRRNEGDTVLHCAISGDYFD 109
+ + + +TP LAA +GHK+ L L D ++ ++G T LH A + +
Sbjct: 30 VNASDSDGKTPLHLAAENGHKEVVKLL--LSQGADPN---AKDSDGKTPLHLAAENGHKE 84
Query: 110 LAFQIIHRCEKLVNSVNEQGVSPLHLLA 137
+ ++ + N+ + G +PLHL A
Sbjct: 85 VVKLLLSQGAD-PNAKDSDGKTPLHLAA 111
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 16 LKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAALHGHKD 71
L GD+ G +PLH A G ++ + + R I N ++TP LAA HGH+D
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASHGHRD 81
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGHKDAFLCLH 77
D G TPLH AA G+ + K + + AD + ++ + TP AA GHK+ L
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLISKGAD---VNAKDSDGRTPLHYAAKEGHKEIVKLLI 90
Query: 78 YLCASVDDGYTYSRRNEGDTVLHCAISGDYFDLAFQIIHRCEKLVNSVNEQGVSPLHL 135
A V+ ++ ++G T LH A + ++ +I + VN+ + G +PL L
Sbjct: 91 SKGADVN-----AKDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNTSDSDGRTPLDL 142
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 16 LKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAALHGHKDAFLC 75
+ + + GS+PLH+AA G + + G RN + P LA GH C
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKC 137
Query: 76 LHYLCASVDDGYTYSRRN-EGDTVLHCAISGDYFDLAFQIIHRCEKLVNSVNEQGVSPLH 134
L +D ++++ G+T L A SG + +L ++ +N+ N +G + LH
Sbjct: 138 L------LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS-INASNNKGNTALH 190
Query: 135 LLATKPNAF 143
+ + F
Sbjct: 191 EAVIEKHVF 199
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 11/124 (8%)
Query: 21 ERGSTPLHIAAGLGNVSMCKCIATAD--PRLIGERNHENETPFFLAALHGHKDAFLCLHY 78
++G TPLH+AA G V + + + D P G+ TP +A H + D L
Sbjct: 144 KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN---GLTPLHVAVHHNNLDIVKLL-- 198
Query: 79 LCASVDDGYTYSRRNEGDTVLHCAISGDYFDLAFQIIHRCEKLVNSVNEQGVSPLHLLAT 138
G +S G T LH A + ++A ++ N+ + QGV+PLHL A
Sbjct: 199 ---LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQ 254
Query: 139 KPNA 142
+ +A
Sbjct: 255 EGHA 258
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 11/115 (9%)
Query: 25 TPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGHKDAFLCLHYLCAS 82
TPLH+A+ +G++ + K + A P + N + ETP +AA GH + L A
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNV---SNVKVETPLHMAARAGHTEVAKYLLQNKAK 72
Query: 83 VDDGYTYSRRNEGDTVLHCAISGDYFDLAFQIIHRCEKLVNSVNEQGVSPLHLLA 137
V+ ++ + T LHCA + ++ +++ N G +PLH+ A
Sbjct: 73 VN-----AKAKDDQTPLHCAARIGHTNM-VKLLLENNANPNLATTAGHTPLHIAA 121
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 75/193 (38%), Gaps = 29/193 (15%)
Query: 22 RGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGHKDAFLCLHYL 79
+G TPLH+AA G+ M + + A+ L N TP L A GH L
Sbjct: 244 QGVTPLHLAAQEGHAEMVALLLSKQANGNL---GNKSGLTPLHLVAQEGHVPVADVLIKH 300
Query: 80 CASVDDGYTYSRRNEGDTVLHCAIS-GDYFDLAFQIIHRCEKLVNSVNEQGVSPLHLLAT 138
VD + G T LH A G+ + F + H+ + VN+ + G SPLH A
Sbjct: 301 GVMVD-----ATTRMGYTPLHVASHYGNIKLVKFLLQHQAD--VNAKTKLGYSPLHQAAQ 353
Query: 139 K---------------PNAFRSGSHLGLCTGIIYHCISV-DKLQEETSYDQYQLETSKKQ 182
+ PN S L ISV D L+ T + L + K +
Sbjct: 354 QGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHR 413
Query: 183 TNYPENYETCLNF 195
++PE + L+
Sbjct: 414 MSFPETVDEILDV 426
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
Query: 18 IGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAALHGHKDAFLCLH 77
+ + + TPLH+AA G+ + K + + + + +++TP AA GH + L
Sbjct: 42 VSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLL 100
Query: 78 YLCASVDDGYTYSRRNEGDTVLHCAISGDYFDLAFQIIHRCEKLVNSVNEQGVSPLHLLA 137
A+ + T G T LH A + + ++ + E + ++G +PLH+ A
Sbjct: 101 ENNANPNLATT-----AGHTPLHIAAREGHVETVLALLEK-EASQACMTKKGFTPLHVAA 154
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin
Repeat Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And
Pinch2 For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 16 LKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAALHGHKD 71
L GD+ G +PLH A G ++ + + R I N ++TP LAA HGH+D
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASHGHRD 86
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 68 GHKDAFLCLHYLCAS---------VDDGYTYSRRNEGD-TVLHCAISGDYFDLAFQIIHR 117
G F LH+ C + G + N GD T LH A S + D+ +++ +
Sbjct: 35 GDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL-Q 93
Query: 118 CEKLVNSVNEQGVSPLH 134
+ +N+VNE G PLH
Sbjct: 94 YKADINAVNEHGNVPLH 110
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 11/118 (9%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCI--ATADPRLIGERNHENETPFFLAALHGHKDAFLCLH 77
D+ G TPLH+AA G++ + + + A AD + ++ + TP LAA GH + L
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLL 88
Query: 78 YLCASVDDGYTYSRRNEGDTVLHCAISGDYFDLAFQIIHRCEKLVNSVNEQGVSPLHL 135
A V+ ++ +G T LH A + ++ +++ + VN+ ++ G +P L
Sbjct: 89 KAGADVN-----AKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAQDKFGKTPFDL 140
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 23/132 (17%)
Query: 316 DGGKPLRRPSSQAEEDETSPYPIVDGGDTDAVLEGKTGSTIPDMAKRETPILIAAKNGIT 375
D GK L + ++DE + +G D +A + K G T P+ +AA+ G
Sbjct: 1 DLGKKLLEAARAGQDDEVRIL-MANGADVNA--KDKDGYT---------PLHLAAREGHL 48
Query: 376 EIVEKILESFPVAIHDINSEKKN-IVLLAVENRQPH--VYQLLLKTTIMKDSVFRKVDDQ 432
EIVE +L+ A D+N++ K+ L + R+ H + ++LLK + D
Sbjct: 49 EIVEVLLK----AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA----GADVNAKDKD 100
Query: 433 GNSALHLAATLG 444
G + LHLAA G
Sbjct: 101 GYTPLHLAAREG 112
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 11/118 (9%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCI--ATADPRLIGERNHENETPFFLAALHGHKDAFLCLH 77
D+ G TPLH+AA G++ + + + A AD + ++ + TP LAA GH + L
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLL 88
Query: 78 YLCASVDDGYTYSRRNEGDTVLHCAISGDYFDLAFQIIHRCEKLVNSVNEQGVSPLHL 135
A V+ ++ +G T LH A + ++ +++ + VN+ ++ G +P L
Sbjct: 89 KAGADVN-----AKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAQDKFGKTPFDL 140
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCI--ATADPRLIGERNHENETPFFLAALHGHKD 71
D+ G TPLH+AA G++ + + + A AD + ++ +TPF LA GH+D
Sbjct: 98 DKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAQDKFGKTPFDLAIREGHED 148
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 34/177 (19%)
Query: 316 DGGKPLRRPSSQAEEDETSPYPIVDGGDTDAVLEGKTGSTIPDMAKRETPILIAAKNGIT 375
D GK L + ++DE + +G D +A + K G T P+ +AA+ G
Sbjct: 1 DLGKKLLEAARAGQDDEVRIL-MANGADVNA--KDKDGYT---------PLHLAAREGHL 48
Query: 376 EIVEKILESFPVAIHDINSEKKN-IVLLAVENRQPH--VYQLLLKTTIMKDSVFRKVDDQ 432
EIVE +L+ A D+N++ K+ L + R+ H + ++LLK + D
Sbjct: 49 EIVEVLLK----AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA----GADVNAKDKD 100
Query: 433 GNSALHLAATLGDHKPWLTPGAALQMQWELRWYEQDKSAEDLFTETHISL-VQEGDQ 488
G + LHLAA G L++ L D +A+D F +T L ++EG +
Sbjct: 101 GYTPLHLAAREGH----------LEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHE 147
Score = 32.7 bits (73), Expect = 0.65, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 50 IGERNHENETPFFLAALHGHKDAFLCLHYLCASVDDGYTYSRRNEGDTVLHCAISGDYFD 109
+ ++ + TP LAA GH + L A V+ ++ +G T LH A + +
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-----AKDKDGYTPLHLAAREGHLE 82
Query: 110 LAFQIIHRCEKLVNSVNEQGVSPLHLLA 137
+ +++ + VN+ ++ G +PLHL A
Sbjct: 83 IV-EVLLKAGADVNAKDKDGYTPLHLAA 109
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 364 TPILIAAKNGITEIVEKILESFPVAIHDINSEKKN---IVLLAVENRQPHVYQLLLKTTI 420
TP+ +AA+NG E+V+ +LE A D+N++ KN + LA N V +LLL+
Sbjct: 4 TPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-- 57
Query: 421 MKDSVFRKVDDQGNSALHLAATLG 444
+ D G + LHLAA G
Sbjct: 58 --GADVNAKDKNGRTPLHLAARNG 79
Score = 35.4 bits (80), Expect = 0.090, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCI--ATADPRLIGERNHENETPFFLAALHGH 69
D+ G TPLH+AA G++ + K + A AD + ++ TP LAA +GH
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGH 80
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 23 GSTPLHIAAGLGNVSMCKCI--ATADPRLIGERNHENETPFFLAALHGHKDAFLCLHYLC 80
G TPLH+AA G++ + K + A AD + ++ TP LAA +GH + L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 81 ASVDDGYTYSRRNEGDTVLHCAISGDYFDL 110
A V+ ++ G T LH A + ++
Sbjct: 59 ADVN-----AKDKNGRTPLHLAARNGHLEV 83
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 59 TPFFLAALHGHKDAFLCLHYLCASVDDGYTYSRRNEGDTVLHCAISGDYFDLAFQIIHRC 118
TP LAA +GH + L A V+ ++ G T LH A + ++ +++
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPLHLAARNGHLEVV-KLLLEA 57
Query: 119 EKLVNSVNEQGVSPLHLLA 137
VN+ ++ G +PLHL A
Sbjct: 58 GADVNAKDKNGRTPLHLAA 76
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 16 LKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAALHGHKDAFLC 75
K+ + +PLH AA G+V +C + A I + + TP AA + H +A
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 76 LHYLCASVDDGYTYSRRNEGDTVLHCAISGDYFDLAFQIIHRCEKLVNSVNEQGVSPL 133
L A VD + EG T LH A ++++ ++ + VN ++ G +P+
Sbjct: 63 LIKAGALVD-----PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAALHGHKDAFLCLHYL 79
D GST LH+AA G+ + + + + + ++ TP A + H D L
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Query: 80 CASVDDGYTYSRRNEGDTVLHCAISGDYFDLA-FQIIHRCEKLVNSVNEQGVSPLHLLA 137
+ ++ R NE + LH A D+A + +C+ +++VN G SPLH+ A
Sbjct: 134 GSDIN-----IRDNEENICLHWAAFSGCVDIAEILLAAKCD--LHAVNIHGDSPLHIAA 185
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 16 LKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAALHGHKD 71
+ I D G+ PLH+AA G++ + + + +G RNH+ +T LA L+G +
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 16 LKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAALHGHKD 71
+ I D G+ PLH+AA G++ + + + +G RNH+ +T LA L+G +
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 16 LKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAALHGHKD 71
+ I D G+ PLH+AA G++ + + + +G RNH+ +T LA L+G +
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 16 LKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAALHGHKD 71
+ I D G+ PLH+AA G++ + + + +G RNH+ +T LA L+G +
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 16 LKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAALHGHKD 71
+ I D G+ PLH+AA G++ + + + +G RNH+ +T LA L+G +
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGHKDAFLCLH 77
D G TPLH AA G+ + K + + AD + ++ + TP AA +GHK+ L
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLISKGAD---VNAKDSDGRTPLHHAAENGHKEVVKLLI 90
Query: 78 YLCASVDDGYTYSRRNEGDTVLHCAISGDYFDLAFQIIHRCEKLVNSVNEQGVSPLHL 135
A V+ ++ ++G T LH A + ++ +I + VN+ + G +PL L
Sbjct: 91 SKGADVN-----AKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDL 142
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 15/140 (10%)
Query: 280 GSTKIRKIREKKQKHTWSVQILDELLRRASLYEYDDDGGKPLRRP--SSQAEEDETSPYP 337
G+T + EK + +LDE+ A + D+ G L SS + E +
Sbjct: 148 GATALMDAAEKGHVEVLKI-LLDEM--GADVNACDNMGRNALIHALLSSDDSDVEAITHL 204
Query: 338 IVDGGDTDAVLEGKTGSTIPDMAKRETPILIAAKNGITEIVEKILESFPVAIHDINSEKK 397
++D G D + G+ G +TP+++A + +V+++LE + I+D +S+ K
Sbjct: 205 LLDHG-ADVNVRGERG---------KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK 254
Query: 398 NIVLLAVENRQPHVYQLLLK 417
+LLAVE + + +LL K
Sbjct: 255 TALLLAVELKLKKIAELLCK 274
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 36.2 bits (82), Expect = 0.054, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGHKDAFLCLH 77
D+ G TPLH+AA G++ + + + AD + + +TP LAAL+GH + L
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLLKHGAD---VNAADKMGDTPLHLAALYGHLEIVEVLL 100
Query: 78 YLCASVDDGYTYSRRNEGDTVLHCAISGDYFDL 110
A V+ TY G T LH A + ++
Sbjct: 101 KNGADVNATDTY-----GFTPLHLAADAGHLEI 128
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 50 IGERNHENETPFFLAALHGHKDAFLCLHYLCASVDDGYTYSRRNEGDTVLHCAISGDYFD 109
+ + +TP LAA+ GH + L A V+ + GDT LH A + +
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN-----AADKMGDTPLHLAALYGHLE 94
Query: 110 LAFQIIHRCEKLVNSVNEQGVSPLHLLA 137
+ +++ + VN+ + G +PLHL A
Sbjct: 95 IV-EVLLKNGADVNATDTYGFTPLHLAA 121
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 33/166 (19%)
Query: 316 DGGKPLRRPSSQAEEDETSPYPIVDGGDTDAVLEGKTGSTIPDMAKRETPILIAAKNGIT 375
D GK L + ++DE + +G D +A E +G +TP+ +AA G
Sbjct: 13 DLGKKLLEAARAGQDDEVRIL-MANGADVNA--EDDSG---------KTPLHLAAIKGHL 60
Query: 376 EIVEKILESFPVAIHDINSEKK---NIVLLAVENRQPHVYQLLLKTTIMKDSVFRKVDDQ 432
EIVE +L+ D+N+ K + LA + ++LLK + D
Sbjct: 61 EIVEVLLKHGA----DVNAADKMGDTPLHLAALYGHLEIVEVLLKN----GADVNATDTY 112
Query: 433 GNSALHLAATLGDHKPWLTPGAALQMQWELRWYEQDKSAEDLFTET 478
G + LHLAA G L++ L Y D +A+D F +T
Sbjct: 113 GFTPLHLAADAGH----------LEIVEVLLKYGADVNAQDKFGKT 148
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGHKDAFLCLH 77
D++GSTPLH+AA +G+ + + + AD + R+ + TP LAA +GH + L
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGAD---VNARDTDGWTPLHLAADNGHLEIVEVLL 100
Query: 78 YLCASVDDGYTYSRRNEGDTVLHCA 102
A V+ Y G T LH A
Sbjct: 101 KYGADVNAQDAY-----GLTPLHLA 120
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 50 IGERNHENETPFFLAALHGHKDAFLCLHYLCASVDDGYTYSRRNEGDTVLHCAISGDYFD 109
+ + + TP LAA GH + L A V+ +R +G T LH A + +
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN-----ARDTDGWTPLHLAADNGHLE 94
Query: 110 LAFQIIHRCEKLVNSVNEQGVSPLHLLATK 139
+ +++ + VN+ + G++PLHL A +
Sbjct: 95 IV-EVLLKYGADVNAQDAYGLTPLHLAADR 123
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAALHGH 69
DE G TPLH+AA LG++ + + + + E N TP LAA+ GH
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNF-GITPLHLAAIRGH 92
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 35/55 (63%)
Query: 363 ETPILIAAKNGITEIVEKILESFPVAIHDINSEKKNIVLLAVENRQPHVYQLLLK 417
+TP+++A + +V+++LE + I+D +S+ K +LLAVE + + +LL K
Sbjct: 240 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 294
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 35.8 bits (81), Expect = 0.083, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 11/118 (9%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGHKDAFLCLH 77
D G TPLH AA G+ + K + + ADP ++ + TP AA +GHK+ L
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLSKGADP---NAKDSDGRTPLHYAAENGHKEIVKLL- 89
Query: 78 YLCASVDDGYTYSRRNEGDTVLHCAISGDYFDLAFQIIHRCEKLVNSVNEQGVSPLHL 135
L D ++ ++G T LH A + ++ ++ + N+ + G +PL L
Sbjct: 90 -LSKGADPN---AKDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNTSDSDGRTPLDL 142
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 340 DGGDTDAVLEGKTGSTIPDMAKRE--TPILIAAKNGITEIVEKILESFPVAIHDINSEKK 397
+ G+ D V + P+ + + TP+ AA+NG EIV K+L S + +S+ +
Sbjct: 13 ENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIV-KLLLSKGADPNAKDSDGR 71
Query: 398 NIVLLAVENRQPHVYQLLLKTTIMKDSVFRKVDDQGNSALHLAATLGDHK 447
+ A EN + +LLL K + D G + LH AA G HK
Sbjct: 72 TPLHYAAENGHKEIVKLLLS----KGADPNAKDSDGRTPLHYAAENG-HK 116
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 35.8 bits (81), Expect = 0.087, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGH 69
D G+TPLH+AA LG++ + + + AD + ++ TP +LAA GH
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLLKYGAD---VNAKDATGITPLYLAAYWGH 113
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGH 69
D G TPLH+AA +G++ + + + AD + + TP LAA GH
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGAD---VNAVDTNGTTPLHLAASLGH 80
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 35.4 bits (80), Expect = 0.094, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCI--ATADPRLIGERNHENETPFFLAALHGHKDAFLCLH 77
D+ G TPLH+AA G++ + + + A AD + ++ + TP LAA GH + L
Sbjct: 44 DKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLL 100
Query: 78 YLCASVD----DGYT 88
A V+ DGYT
Sbjct: 101 KAGADVNAKDKDGYT 115
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 23/132 (17%)
Query: 316 DGGKPLRRPSSQAEEDETSPYPIVDGGDTDAVLEGKTGSTIPDMAKRETPILIAAKNGIT 375
D GK L + ++DE + +G D +A + K G T P+ +AA+ G
Sbjct: 13 DLGKKLLEAARAGQDDEVRIL-MANGADVNA--KDKDGYT---------PLHLAAREGHL 60
Query: 376 EIVEKILESFPVAIHDINSEKKN-IVLLAVENRQPH--VYQLLLKTTIMKDSVFRKVDDQ 432
EIVE +L+ A D+N++ K+ L + R+ H + ++LLK + D
Sbjct: 61 EIVEVLLK----AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA----GADVNAKDKD 112
Query: 433 GNSALHLAATLG 444
G + LHLAA G
Sbjct: 113 GYTPLHLAAREG 124
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 50 IGERNHENETPFFLAALHGHKDAFLCLHYLCASVDDGYTYSRRNEGDTVLHCAISGDYFD 109
+ ++ + TP LAA GH + L A V+ ++ +G T LH A + +
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-----AKDKDGYTPLHLAAREGHLE 94
Query: 110 LAFQIIHRCEKLVNSVNEQGVSPLHLLA 137
+ +++ + VN+ ++ G +PLHL A
Sbjct: 95 IV-EVLLKAGADVNAKDKDGYTPLHLAA 121
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 16 LKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAALHGHKDAFLC 75
++I D+ PLH AA +G++ + + + + ++ + TP F A GH DA +
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192
Query: 76 L 76
L
Sbjct: 193 L 193
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 16 LKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAALHGHKDAFLC 75
++I D+ PLH AA +G++ + + + + ++ + TP F A GH DA +
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192
Query: 76 L 76
L
Sbjct: 193 L 193
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 16 LKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAALHGHKDAFLC 75
++I D+ PLH AA +G++ + + + + ++ + TP F A GH DA +
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192
Query: 76 L 76
L
Sbjct: 193 L 193
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 19 GDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGHKDAFLCL 76
G + G+TPLH AA G+ K + + AD + R+ + TP LAA +GH + L
Sbjct: 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGAD---VNARSKDGNTPLHLAAKNGHAEIVKLL 61
Query: 77 HYLCASVDDGYTYSRRNEGDTVLHCA 102
A V+ +R +G+T H A
Sbjct: 62 LAKGADVN-----ARSKDGNTPEHLA 82
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 23 GSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAALHGHKD 71
G+TPLH+AA G+ + K + A + R+ + TP LA +GH +
Sbjct: 42 GNTPLHLAAKNGHAEIVKLL-LAKGADVNARSKDGNTPEHLAKKNGHHE 89
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 16/83 (19%)
Query: 316 DGGKPLRRPSSQAEEDETSPYPIVDGGDTDAVLEGKTGSTIPDMAKRETPILIAAKNGIT 375
DG PL + +E + G D +A K G+T P+ +AAKNG
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKL-LSKGADVNA--RSKDGNT---------PLHLAAKNGHA 55
Query: 376 EIVEKILESFPVAIHDINSEKKN 398
EIV+ +L D+N+ K+
Sbjct: 56 EIVKLLLAKGA----DVNARSKD 74
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGH 69
D G+TPLH+AA G++ + + + AD + +++E TP LAA GH
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGAD---VNAKDYEGFTPLHLAAYDGH 125
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 364 TPILIAAKNGITEIVEKILESFPVAIHDINSEKKNIVLLAVENRQPHVYQLLLKTTIMKD 423
TP+ +AAK G EIVE +L+ + ++ ++ + LA +N + ++LLK
Sbjct: 49 TPLHLAAKTGHLEIVEVLLK-YGADVNAWDNYGATPLHLAADNGHLEIVEVLLK----HG 103
Query: 424 SVFRKVDDQGNSALHLAATLGDHKPWLTPGAALQMQWELRWYEQDKSAEDLFTET 478
+ D +G + LHLAA G L++ L Y D +A+D F +T
Sbjct: 104 ADVNAKDYEGFTPLHLAAYDGH----------LEIVEVLLKYGADVNAQDKFGKT 148
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAALHGHKDAFLCLHYL 79
D G TPLH+AA G++ + + + + N+ TP LAA +GH + L
Sbjct: 44 DWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNY-GATPLHLAADNGHLEIVEVLLKH 102
Query: 80 CASVDDGYTYSRRNEGDTVLHCAISGDYFDLAFQIIHRCEKLVNSVNEQ 128
A V+ ++ EG T LH A +D +I+ K VN Q
Sbjct: 103 GADVN-----AKDYEGFTPLHLAA----YDGHLEIVEVLLKYGADVNAQ 142
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 59 TPFFLAALHGHKDAFLCLHYLCASVDDGYTYSRRNEGDTVLHCAISGDYFDLAFQIIHRC 118
TP LAA GH + L A V+ + N G T LH A + ++ +++ +
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYGADVN-----AWDNYGATPLHLAADNGHLEIV-EVLLKH 102
Query: 119 EKLVNSVNEQGVSPLHLLA 137
VN+ + +G +PLHL A
Sbjct: 103 GADVNAKDYEGFTPLHLAA 121
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGH 69
D +G+TPLH+AA ++ + + + AD + +++ TP LAAL GH
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGAD---VNAHDNDGSTPLHLAALFGH 92
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGHKDAFLCLH 77
D G TPLH+AA G++ + + + AD + +H TP LAAL GH + L
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGAD---VNAVDHAGMTPLRLAALFGHLEIVEVLL 100
Query: 78 YLCASVDDGYTYSRRNEGDTVLHCA 102
A V+ + EG T LH A
Sbjct: 101 KNGADVN-----ANDMEGHTPLHLA 120
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGH 69
D G TPL +AA G++ + + + AD + + E TP LAA+ GH
Sbjct: 77 DHAGMTPLRLAALFGHLEIVEVLLKNGAD---VNANDMEGHTPLHLAAMFGH 125
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 17/129 (13%)
Query: 316 DGGKPLRRPSSQAEEDETSPYPIVDGGDTDAVLEGKTGSTIPDMAKRETPILIAAKNGIT 375
D GK L + +DE + +G D +A + A TP+ +AA NG
Sbjct: 13 DLGKKLLEAARAGRDDEVRIL-MANGADVNA-----------EDASGWTPLHLAAFNGHL 60
Query: 376 EIVEKILESFPVAIHDINSEKKNIVLLAVENRQPHVYQLLLKTTIMKDSVFRKVDDQGNS 435
EIVE +L++ ++ ++ + LA + ++LLK + D +G++
Sbjct: 61 EIVEVLLKN-GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN----GADVNANDMEGHT 115
Query: 436 ALHLAATLG 444
LHLAA G
Sbjct: 116 PLHLAAMFG 124
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGHKDAFLCLH 77
D G TPLH+AA G++ + + + AD I + TP LAAL GH + L
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAI---DIXGSTPLHLAALIGHLEIVEVLL 100
Query: 78 YLCASVDDGYTYSRRNEGDTVLHCA 102
A V+ T+ GDT LH A
Sbjct: 101 KHGADVNAVDTW-----GDTPLHLA 120
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGH 69
D GSTPLH+AA +G++ + + + AD + + +TP LAA+ GH
Sbjct: 77 DIXGSTPLHLAALIGHLEIVEVLLKHGAD---VNAVDTWGDTPLHLAAIMGH 125
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 17/129 (13%)
Query: 316 DGGKPLRRPSSQAEEDETSPYPIVDGGDTDAVLEGKTGSTIPDMAKRETPILIAAKNGIT 375
D GK L + ++DE + +G D +A A TP+ +AA G
Sbjct: 13 DLGKKLLEAARAGQDDEVRIL-MANGADVNAT-----------DASGLTPLHLAATYGHL 60
Query: 376 EIVEKILESFPVAIHDINSEKKNIVLLAVENRQPHVYQLLLKTTIMKDSVFRKVDDQGNS 435
EIVE +L+ ++ I+ + LA + ++LLK + VD G++
Sbjct: 61 EIVEVLLKH-GADVNAIDIXGSTPLHLAALIGHLEIVEVLLK----HGADVNAVDTWGDT 115
Query: 436 ALHLAATLG 444
LHLAA +G
Sbjct: 116 PLHLAAIMG 124
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 45 ADPRLIGERNHENETPFFLAALHGHKDAFLCLHYLCASVDDGYTYSRRNEGDTVLHCAIS 104
AD L + ++ T A GH + L L V+D + + G + LH A S
Sbjct: 29 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-----KDDAGWSPLHIAAS 83
Query: 105 GDYFDLAFQIIHRCEKLVNSVNEQGVSPLHLLATK 139
++ ++ + + VN+VN+ G +PLH A+K
Sbjct: 84 AGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASK 117
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 45 ADPRLIGERNHENETPFFLAALHGHKDAFLCLHYLCASVDDGYTYSRRNEGDTVLHCAIS 104
AD L + ++ T A GH + L L V+D + + G + LH A S
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-----KDDAGWSPLHIAAS 82
Query: 105 GDYFDLAFQIIHRCEKLVNSVNEQGVSPLHLLATK 139
++ ++ + + VN+VN+ G +PLH A+K
Sbjct: 83 AGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASK 116
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGHKDAFLCLH 77
D G TPLH+AA G++ + + + AD I + TP LAAL GH + L
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAI---DIMGSTPLHLAALIGHLEIVEVLL 100
Query: 78 YLCASVDDGYTYSRRNEGDTVLHCA 102
A V+ T+ GDT LH A
Sbjct: 101 KHGADVNAVDTW-----GDTPLHLA 120
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGH 69
D GSTPLH+AA +G++ + + + AD + + +TP LAA+ GH
Sbjct: 77 DIMGSTPLHLAALIGHLEIVEVLLKHGAD---VNAVDTWGDTPLHLAAIMGH 125
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 17/129 (13%)
Query: 316 DGGKPLRRPSSQAEEDETSPYPIVDGGDTDAVLEGKTGSTIPDMAKRETPILIAAKNGIT 375
D GK L + ++DE + +G D +A A TP+ +AA G
Sbjct: 13 DLGKKLLEAARAGQDDEVRIL-MANGADVNAT-----------DASGLTPLHLAATYGHL 60
Query: 376 EIVEKILESFPVAIHDINSEKKNIVLLAVENRQPHVYQLLLKTTIMKDSVFRKVDDQGNS 435
EIVE +L+ ++ I+ + LA + ++LLK + VD G++
Sbjct: 61 EIVEVLLKH-GADVNAIDIMGSTPLHLAALIGHLEIVEVLLK----HGADVNAVDTWGDT 115
Query: 436 ALHLAATLG 444
LHLAA +G
Sbjct: 116 PLHLAAIMG 124
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 32.7 bits (73), Expect = 0.74, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGH 69
D GSTPLH+AA G++ + + + AD + ++ TP LAA GH
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLKNGAD---VNAKDDNGITPLHLAANRGH 125
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 59 TPFFLAALHGHKDAFLCLHYLCASVDDGYTYSRRNEGDTVLHCAISGDYFDLAFQIIHRC 118
TP LAA GH + L A V+ T G T LH A + ++ +++ +
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADVNAYDTL-----GSTPLHLAAHFGHLEIV-EVLLKN 102
Query: 119 EKLVNSVNEQGVSPLHLLATK 139
VN+ ++ G++PLHL A +
Sbjct: 103 GADVNAKDDNGITPLHLAANR 123
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGHKDAFLCLH 77
DERG TPL A+ G + + + ADP ++ + E E+ LA+ G+ D L
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAK---ERESALSLASTGGYTDIVGLL- 88
Query: 78 YLCASVD-DGYTYSRRNEGDTVLHCAISGDYFDLAFQIIHRCEKLVNSVNEQGVSPLHL 135
L VD + Y ++ G T L A+ G++ ++ R L + G +P+ L
Sbjct: 89 -LERDVDINIYDWN----GGTPLLYAVRGNHVKCVEALLARGADLTTEA-DSGYTPMDL 141
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGHKDAFLCLH 77
DERG TPL A+ G + + + ADP ++ + E E+ LA+ G+ D L
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAK---ERESALSLASTGGYTDIVGLL- 88
Query: 78 YLCASVD-DGYTYSRRNEGDTVLHCAISGDYFDLAFQIIHRCEKLVNSVNEQGVSPLHL 135
L VD + Y ++ G T L A+ G++ ++ R L + G +P+ L
Sbjct: 89 -LERDVDINIYDWN----GGTPLLYAVHGNHVKCVEALLARGADLTTEA-DSGYTPMDL 141
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 16/82 (19%)
Query: 316 DGGKPLRRPSSQAEEDETSPYPIVDGGDTDAVLEGKTGSTIPDMAKRETPILIAAKNGIT 375
D GK L + ++DE I+ D + K GST P+ +AA+NG
Sbjct: 5 DLGKKLLEAARAGQDDEVR---ILMANGADVAAKDKNGST---------PLHLAARNGHL 52
Query: 376 EIVEKILESFPVAIHDINSEKK 397
E+V+ +LE A D+N++ K
Sbjct: 53 EVVKLLLE----AGADVNAQDK 70
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 59 TPFFLAALHGHKDAFLCLHYLCASVDDGYTYSRRNEGDTVLHCAISGDYFDLAFQIIHRC 118
TP LAA GH + L A VD + G T LH A + ++ +++ +
Sbjct: 49 TPLHLAAYSGHLEIVEVLLKHGADVDASDVF-----GYTPLHLAAYWGHLEIV-EVLLKN 102
Query: 119 EKLVNSVNEQGVSPLHLLA 137
VN+++ G++PLHL A
Sbjct: 103 GADVNAMDSDGMTPLHLAA 121
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 19 GDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGHKDAFLCL 76
D G+TPLH+AA G++ + + + AD + + TP LAA GH + L
Sbjct: 43 ADNTGTTPLHLAAYSGHLEIVEVLLKHGAD---VDASDVFGYTPLHLAAYWGHLEIVEVL 99
Query: 77 HYLCASVDDGYTYSRRNEGDTVLHCAISGDYFDL 110
A V+ + ++G T LH A Y ++
Sbjct: 100 LKNGADVN-----AMDSDGMTPLHLAAKWGYLEI 128
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 23/132 (17%)
Query: 316 DGGKPLRRPSSQAEEDETSPYPIVDGGDTDAVLEGKTGSTIPDMAKRETPILIAAKNGIT 375
D GK L + ++DE + +G D +A TP+ +AA NG
Sbjct: 13 DLGKKLLEAARAGQDDEVRIL-MANGADVNATDNDGY-----------TPLHLAASNGHL 60
Query: 376 EIVEKILESFPVAIHDINSEKKNIVL---LAVENRQPHVYQLLLKTTIMKDSVFRKVDDQ 432
EIVE +L++ D+N+ + LA + ++LLK + D+
Sbjct: 61 EIVEVLLKNGA----DVNASDLTGITPLHLAAATGHLEIVEVLLK----HGADVNAYDND 112
Query: 433 GNSALHLAATLG 444
G++ LHLAA G
Sbjct: 113 GHTPLHLAAKYG 124
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGHKDAFLCLH 77
D G TPLH+AA G++ + + + AD + + TP LAA GH + L
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLKNGAD---VNASDLTGITPLHLAAATGHLEIVEVLL 100
Query: 78 YLCASVDDGYTYSRRNEGDTVLHCA 102
A V+ + N+G T LH A
Sbjct: 101 KHGADVN-----AYDNDGHTPLHLA 120
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 38/184 (20%)
Query: 316 DGGKPLRRPSSQAEEDETSPYPIVDGGDTDAVLEGKTGSTIPDMAKRETPILIAAKNGIT 375
D GK L + ++DE I +G D +AV TG T P+ +AA +G
Sbjct: 13 DLGKKLLEAARAGQDDEVRIL-IANGADVNAV--DNTGLT---------PLHLAAVSGHL 60
Query: 376 EIVEKILESFPVAIHDINSEKKNI-----VLLAVENRQPHVYQLLLKTTIMKDSVFRKVD 430
EIVE +L+ H + + ++ + LA + ++LLK + D
Sbjct: 61 EIVEVLLK------HGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKY----GADVNAFD 110
Query: 431 DQGNSALHLAATLGDHKPWLTPGAALQMQWELRWYEQDKSAEDLFTETHISL-VQEGDQW 489
G++ LHLAA G L++ L Y D +A+D F +T + + G++
Sbjct: 111 MTGSTPLHLAADEGH----------LEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 490 LIKT 493
L K+
Sbjct: 161 LAKS 164
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGHKDAFLCLH 77
D G TPLH+AA +G++ + + + AD + + TP LAA GH + L
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLLKNGAD---VNALDFSGSTPLHLAAKRGHLEIVEVLL 100
Query: 78 YLCASVDDGYTYSRRNEGDTVLHCAISGDYFDL 110
A V+ T G T LH A + ++
Sbjct: 101 KYGADVNADDTI-----GSTPLHLAADTGHLEI 128
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 31/165 (18%)
Query: 316 DGGKPLRRPSSQAEEDETSPYPIVDGGDTDAVLEGKTGSTIPDMAKRETPILIAAKNGIT 375
D GK L + ++DE + +G D +A E G +TP+ +AA+ G
Sbjct: 13 DLGKKLLEAARAGQDDEVRIL-MANGADVNA--EDTYG---------DTPLHLAARVGHL 60
Query: 376 EIVEKILESFPVAIHDINSEKKNIVLLAVENRQPHVYQLLLK--TTIMKDSVFRKVDDQG 433
EIVE +L++ ++ ++ + LA + + ++LLK + D D G
Sbjct: 61 EIVEVLLKN-GADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNAD------DTIG 113
Query: 434 NSALHLAATLGDHKPWLTPGAALQMQWELRWYEQDKSAEDLFTET 478
++ LHLAA G L++ L Y D +A+D F +T
Sbjct: 114 STPLHLAADTGH----------LEIVEVLLKYGADVNAQDKFGKT 148
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 45 ADPRLIGERNHENETPFFLAALHGHKDAFLCLHYLCASVDDGYTYSRRNEGDTVLHCAIS 104
AD L + ++ T A GH + L L V+D + + G + LH A S
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-----KDDAGWSPLHIAAS 82
Query: 105 GDYFDLAFQIIHRCEKLVNSVNEQGVSPLHLLATK 139
++ ++ + VN+VN+ G +PLH A+K
Sbjct: 83 AGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASK 116
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 45 ADPRLIGERNHENETPFFLAALHGHKDAFLCLHYLCASVDDGYTYSRRNEGDTVLHCAIS 104
AD L + ++ T A GH + L L V+D + + G + LH A S
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-----KDDAGWSPLHIAAS 82
Query: 105 GDYFDLAFQIIHRCEKLVNSVNEQGVSPLHLLATK 139
++ ++ + VN+VN+ G +PLH A+K
Sbjct: 83 AGRDEIVKALLVKGAH-VNAVNQNGCTPLHYAASK 116
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGH 69
D+ G TPLH+AA G++ + + + AD + R+ TP LAA GH
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGAD---VNARDIWGRTPLHLAATVGH 92
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 11 QQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHG 68
+Q V+ DE G TPL AA G +++ + + ADP+L+G+ E+ LA G
Sbjct: 40 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG---RESALSLACSKG 96
Query: 69 HKD 71
+ D
Sbjct: 97 YTD 99
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 11 QQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHG 68
+Q V+ DE G TPL AA G +++ + + ADP+L+G+ E+ LA G
Sbjct: 22 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG---RESALSLACSKG 78
Query: 69 HKD 71
+ D
Sbjct: 79 YTD 81
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 11 QQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHG 68
+Q V+ DE G TPL AA G +++ + + ADP+L+G+ E+ LA G
Sbjct: 24 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG---RESALSLACSKG 80
Query: 69 HKD 71
+ D
Sbjct: 81 YTD 83
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 313 YDDDGGKPLRRPSSQAEEDETSPYPIVDGGDTDAVLEGKTGSTIPDMAKRETPILIAAKN 372
+ D GK L ++ ++DE + +G D +A + TP+ +AA N
Sbjct: 2 FGQDLGKKLLEAAAAGQDDEVRIL-MANGADVNATDDNGL-----------TPLHLAAAN 49
Query: 373 GITEIVEKILESFPVAIHDIN-SEKKNIVLLAVENRQPH--VYQLLLKTTIMKDSVFRKV 429
G EIVE +L++ D+N S+ I L + H + ++LLK +
Sbjct: 50 GQLEIVEVLLKNGA----DVNASDSAGITPLHLAAYDGHLEIVEVLLK----HGADVNAY 101
Query: 430 DDQGNSALHLAATLG 444
D G + LHLAA G
Sbjct: 102 DRAGWTPLHLAALSG 116
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGHKDAFLCLH 77
D+ G TPLH+AA G + + + + AD + + TP LAA GH + L
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGAD---VNASDSAGITPLHLAAYDGHLEIVEVLL 92
Query: 78 YLCASVDDGYTYSRRNEGDTVLH-CAISG 105
A V+ Y R G T LH A+SG
Sbjct: 93 KHGADVN---AYDR--AGWTPLHLAALSG 116
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGH 69
D G TPLH+AA G++ + + + AD + +H TP LAA GH
Sbjct: 77 DSLGVTPLHLAADRGHLEVVEVLLKNGAD---VNANDHNGFTPLHLAANIGH 125
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGH 69
D+ G TPLH+AA G++ + + + AD + +++ TP LAA GH
Sbjct: 77 DKSGWTPLHLAAYRGHLEIVEVLLKYGAD---VNAMDYQGYTPLHLAAEDGH 125
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 21/118 (17%)
Query: 364 TPILIAAKNGITEIVEKILESFPVAIHDINSEKKN---IVLLAVENRQPHVYQLLLKTTI 420
TP+ + NG EI+E +L+ D+N+ K+ + LA + ++LLK
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKY----AADVNASDKSGWTPLHLAAYRGHLEIVEVLLKY-- 102
Query: 421 MKDSVFRKVDDQGNSALHLAATLGDHKPWLTPGAALQMQWELRWYEQDKSAEDLFTET 478
+ +D QG + LHLAA G L++ L Y D +A+D F +T
Sbjct: 103 --GADVNAMDYQGYTPLHLAAEDGH----------LEIVEVLLKYGADVNAQDKFGKT 148
>pdb|2Y8N|A Chain A, Crystal Structure Of Glycyl Radical Enzyme
pdb|2Y8N|C Chain C, Crystal Structure Of Glycyl Radical Enzyme
pdb|2YAJ|A Chain A, Crystal Structure Of Glycyl Radical Enzyme With Bound
Substrate
pdb|2YAJ|C Chain C, Crystal Structure Of Glycyl Radical Enzyme With Bound
Substrate
Length = 897
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 26/58 (44%)
Query: 106 DYFDLAFQIIHRCEKLVNSVNEQGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVD 163
+Y +L +++RC + + + P KP+ F+ G H+G CI+ +
Sbjct: 580 EYMELTTDVVNRCNNIQMDIWRKYNMPAVNSLLKPDCFKKGKHIGTMGARYNSCINFE 637
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 12/69 (17%)
Query: 316 DGGKPLRRPSSQAEEDETSPYPIVDGGDTDAVLEGKTGSTIPDMAKRETPILIAAKNGIT 375
D GK L + ++DE I+ D + K GST P+ +AA+NG
Sbjct: 23 DLGKKLLEAARAGQDDEVR---ILMANGADVAAKDKNGST---------PLHLAARNGHL 70
Query: 376 EIVEKILES 384
E+V+ +LE+
Sbjct: 71 EVVKLLLEA 79
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 50 IGERNHENETPFFLAALHGHKDAFLCLHYLCASVDDGYTYSRRNEGDTVLHCAISGDYFD 109
+ R+ TP LAA GH + L A V+ ++ + G T LH A + +
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVN-----AKDSLGVTPLHLAARRGHLE 94
Query: 110 LAFQIIHRCEKLVNSVNEQGVSPLHLLATK 139
+ +++ + VN+ + G +PLHL A +
Sbjct: 95 IV-EVLLKNGADVNASDSHGFTPLHLAAKR 123
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAALHGH 69
D G TPLH+AA G++ + + + + +H TP LAA GH
Sbjct: 77 DSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSH-GFTPLHLAAKRGH 125
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGH 69
D G TPLH+AA G++ + + + AD + ++ TP LAA GH
Sbjct: 44 DFTGWTPLHLAAHFGHLEIVEVLLKNGAD---VNAKDSLGVTPLHLAARRGH 92
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 19/21 (90%)
Query: 363 ETPILIAAKNGITEIVEKILE 383
ETP+++A+K G +EIV+K+LE
Sbjct: 135 ETPLIVASKYGRSEIVKKLLE 155
>pdb|4DRF|A Chain A, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
pdb|4DRF|C Chain C, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
pdb|4E6N|A Chain A, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
pdb|4E6N|C Chain C, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
Length = 427
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 122 VNSVNEQGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSY 171
VNS+++ ++P H+LAT+ +H+ I +C D L T++
Sbjct: 250 VNSIDDLKLAPFHILATEGKVHSDKNHIWHMDTIAKYCTQDDSLIMATNH 299
>pdb|3TY8|A Chain A, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Apo Form
pdb|3TY8|B Chain B, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Apo Form
Length = 413
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 122 VNSVNEQGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSY 171
VNS+++ ++P H+LAT+ +H+ I +C D L T++
Sbjct: 236 VNSIDDLKLAPFHILATEGKVHSDKNHIWHMDTIAKYCTQDDSLIMATNH 285
>pdb|3TY9|A Chain A, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
pdb|3TY9|B Chain B, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
pdb|3TY9|C Chain C, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
pdb|3TY9|D Chain D, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
Length = 393
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 122 VNSVNEQGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSY 171
VNS+++ ++P H+LAT+ +H+ I +C D L T++
Sbjct: 216 VNSIDDLKLAPFHILATEGKVHSDKNHIWHMDTIAKYCTQDDSLIMATNH 265
>pdb|3TY5|A Chain A, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain In
Complex With Atp
pdb|3TY5|B Chain B, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain In
Complex With Atp
Length = 413
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 122 VNSVNEQGVSPLHLLATKPNAFRSGSHLGLCTGIIYHCISVDKLQEETSY 171
VNS+++ ++P H+LAT+ +H+ I +C D L T++
Sbjct: 236 VNSIDDLKLAPFHILATEGKVHSDKNHIWHMDTIAKYCTQDDSLIMATNH 285
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAALHGH 69
D+ G TPLH+AA G++ + + + AD + + TP LAA GH
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGAD---VNASDSWGRTPLHLAATVGH 92
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 71 DAFLCLHYLCAS---------VDDGYTYSR-RNEGDTVLHCAISGDYFDLAFQIIHRCEK 120
D LH C V++G ++ NEG LH A S Y D+A +I +
Sbjct: 72 DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH 131
Query: 121 LVNSVNEQGVSPLHL 135
V +VN +G +PL +
Sbjct: 132 -VGAVNSEGDTPLDI 145
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 20 DERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAALHGHKD 71
D G++PLH+AA G+ S + + A R + TP +AA GH +
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGHAN 81
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 15 VLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFL 63
V+ + D TPLH AA G +CK + ADP ++N + TP L
Sbjct: 102 VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT---KKNRDGNTPLDL 149
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 15 VLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFL 63
V+ + D TPLH AA G +CK + ADP ++N + TP L
Sbjct: 100 VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT---KKNRDGNTPLDL 147
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 15 VLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFL 63
V+ + D TPLH AA G +CK + ADP ++N + TP L
Sbjct: 104 VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT---KKNRDGNTPLDL 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,799,159
Number of Sequences: 62578
Number of extensions: 836862
Number of successful extensions: 1977
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 1672
Number of HSP's gapped (non-prelim): 294
length of query: 654
length of database: 14,973,337
effective HSP length: 105
effective length of query: 549
effective length of database: 8,402,647
effective search space: 4613053203
effective search space used: 4613053203
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)