Your job contains 1 sequence.
>038133
MNRLVDEGGSNNKKPLFLTKAQREQLALERRQEQIAQQKRRQEQQQQLLSQPQTHGRNSS
DSRDRERERHRREREEEAKARERARLEKLAERERERELELIKEQYLGSKKPKKRVIKPSE
KFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREEI
RKKEGVEEKPEEAAALKLKEEAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNIS
YKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSG
KTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVS
IVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEP
QVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIG
TAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYR
VTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTH
RIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPGTIPDR
PPRRNDTVFAH
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 038133
(671 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2057640 - symbol:AT2G33730 species:3702 "Arabi... 2526 5.0e-267 2
UNIPROTKB|A6QLB2 - symbol:DDX23 "Uncharacterized protein"... 1444 1.2e-165 3
UNIPROTKB|E2RTL6 - symbol:DDX23 "Uncharacterized protein"... 1444 1.2e-165 3
UNIPROTKB|Q9BUQ8 - symbol:DDX23 "Probable ATP-dependent R... 1444 1.2e-165 3
RGD|1308685 - symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box po... 1444 1.2e-165 3
ZFIN|ZDB-GENE-030131-6215 - symbol:ddx23 "DEAD (Asp-Glu-A... 1445 1.1e-164 3
GENEDB_PFALCIPARUM|PFE0925c - symbol:PFE0925c "snrnp prot... 1337 1.1e-162 3
UNIPROTKB|Q8I0W7 - symbol:PFE0925c "Snrnp protein, putati... 1337 1.1e-162 3
FB|FBgn0032690 - symbol:CG10333 species:7227 "Drosophila ... 1408 8.6e-161 3
WB|WBGene00017162 - symbol:ddx-23 species:6239 "Caenorhab... 1356 1.8e-156 3
DICTYBASE|DDB_G0277857 - symbol:helB2 "putative U5 small ... 1374 6.5e-151 2
ASPGD|ASPL0000051195 - symbol:AN1634 species:162425 "Emer... 1328 2.1e-149 3
UNIPROTKB|I3LNN1 - symbol:DDX23 "Uncharacterized protein"... 822 2.1e-135 4
POMBASE|SPCC63.11 - symbol:prp28 "U5 snRNP-associated pro... 1276 9.7e-133 2
CGD|CAL0001091 - symbol:orf19.672 species:5476 "Candida a... 931 2.3e-97 2
UNIPROTKB|Q59W52 - symbol:PRP28 "Pre-mRNA-splicing ATP-de... 931 2.3e-97 2
SGD|S000002651 - symbol:PRP28 "RNA helicase in the DEAD-b... 867 9.0e-90 2
TAIR|locus:2076351 - symbol:AT3G58510 species:3702 "Arabi... 812 6.6e-81 1
TAIR|locus:2037416 - symbol:RCF1 "regulator of CBF gene e... 814 7.6e-81 1
UNIPROTKB|E1BSC0 - symbol:DDX46 "Uncharacterized protein"... 807 2.2e-80 1
UNIPROTKB|F1PK90 - symbol:DDX46 "Uncharacterized protein"... 795 4.2e-79 1
UNIPROTKB|Q7L014 - symbol:DDX46 "Probable ATP-dependent R... 795 4.2e-79 1
UNIPROTKB|I3LR20 - symbol:DDX46 "Uncharacterized protein"... 795 4.2e-79 1
MGI|MGI:1920895 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) bo... 795 4.2e-79 1
POMBASE|SPCC10H11.01 - symbol:prp11 "ATP-dependent RNA he... 795 4.2e-79 1
RGD|708480 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box pol... 795 4.2e-79 1
UNIPROTKB|Q62780 - symbol:Ddx46 "Probable ATP-dependent R... 795 4.2e-79 1
TAIR|locus:2076436 - symbol:AT3G58570 species:3702 "Arabi... 794 5.4e-79 1
UNIPROTKB|F1MX40 - symbol:DDX46 "Uncharacterized protein"... 790 1.4e-78 1
TAIR|locus:2041549 - symbol:AT2G42520 species:3702 "Arabi... 789 1.8e-78 1
FB|FBgn0030631 - symbol:CG6227 species:7227 "Drosophila m... 795 1.8e-78 1
ZFIN|ZDB-GENE-030131-667 - symbol:ddx46 "DEAD (Asp-Glu-Al... 787 3.0e-78 1
FB|FBgn0035720 - symbol:CG10077 species:7227 "Drosophila ... 784 6.2e-78 1
UNIPROTKB|A4RN46 - symbol:PRP5 "Pre-mRNA-processing ATP-d... 779 2.1e-77 1
WB|WBGene00006888 - symbol:vbh-1 species:6239 "Caenorhabd... 763 1.0e-75 1
CGD|CAL0003204 - symbol:DBP2 species:5476 "Candida albica... 762 1.3e-75 1
UNIPROTKB|F1RX16 - symbol:DDX3X "Uncharacterized protein"... 755 7.3e-75 1
UNIPROTKB|G5E631 - symbol:DDX3X "Uncharacterized protein"... 754 9.3e-75 1
UNIPROTKB|J9P0V9 - symbol:DDX3X "Uncharacterized protein"... 754 9.3e-75 1
UNIPROTKB|O00571 - symbol:DDX3X "ATP-dependent RNA helica... 754 9.3e-75 1
SGD|S000005730 - symbol:DED1 "ATP-dependent DEAD (Asp-Glu... 753 1.2e-74 1
UNIPROTKB|F1NIX1 - symbol:DDX3X "Uncharacterized protein"... 752 1.5e-74 1
UNIPROTKB|D3IVZ2 - symbol:DDX3Y "Uncharacterized protein"... 751 1.9e-74 1
MGI|MGI:91842 - symbol:D1Pas1 "DNA segment, Chr 1, Pasteu... 750 2.5e-74 1
RGD|1309586 - symbol:RGD1309586 "similar to probable ATP-... 750 2.5e-74 1
UNIPROTKB|F1S0I6 - symbol:DDX43 "Uncharacterized protein"... 749 3.1e-74 1
RGD|1311758 - symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box po... 749 3.1e-74 1
SGD|S000005056 - symbol:DBP2 "ATP-dependent RNA helicase ... 749 3.1e-74 1
UNIPROTKB|E2RRQ7 - symbol:DDX3X "Uncharacterized protein"... 748 4.0e-74 1
MGI|MGI:103064 - symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/Hi... 748 4.0e-74 1
RGD|1564771 - symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box po... 748 4.0e-74 1
ASPGD|ASPL0000055571 - symbol:AN1266 species:162425 "Emer... 754 4.2e-74 1
UNIPROTKB|F1NIX2 - symbol:DDX3X "Uncharacterized protein"... 747 5.1e-74 1
UNIPROTKB|I3LDV0 - symbol:DDX3Y "Uncharacterized protein"... 747 5.1e-74 1
WB|WBGene00018776 - symbol:F53H1.1 species:6239 "Caenorha... 747 5.1e-74 1
UNIPROTKB|A3KN07 - symbol:DDX41 "Uncharacterized protein"... 746 6.5e-74 1
UNIPROTKB|E2R052 - symbol:DDX41 "Uncharacterized protein"... 746 6.5e-74 1
UNIPROTKB|J9NZF6 - symbol:DDX41 "Uncharacterized protein"... 746 6.5e-74 1
UNIPROTKB|J3KNN5 - symbol:DDX41 "Probable ATP-dependent R... 746 6.5e-74 1
UNIPROTKB|Q9UJV9 - symbol:DDX41 "Probable ATP-dependent R... 746 6.5e-74 1
MGI|MGI:1349406 - symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) bo... 746 6.5e-74 1
ZFIN|ZDB-GENE-980526-150 - symbol:pl10 "pl10" species:795... 746 6.5e-74 1
MGI|MGI:1920185 - symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) bo... 745 8.4e-74 1
RGD|1559513 - symbol:RGD1559513 "similar to DEAD (Asp-Glu... 742 1.7e-73 1
WB|WBGene00002244 - symbol:laf-1 species:6239 "Caenorhabd... 741 2.2e-73 1
UNIPROTKB|B4DXX7 - symbol:DDX3Y "Uncharacterized protein"... 740 2.8e-73 1
UNIPROTKB|O15523 - symbol:DDX3Y "ATP-dependent RNA helica... 740 2.8e-73 1
UNIPROTKB|F1NAH6 - symbol:LOC100859810 "Uncharacterized p... 739 3.6e-73 1
RGD|2314437 - symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box po... 739 3.6e-73 1
CGD|CAL0004832 - symbol:orf19.7392 species:5476 "Candida ... 738 4.6e-73 1
TIGR_CMR|SPO_1443 - symbol:SPO_1443 "ATP-dependent RNA he... 738 4.6e-73 1
SGD|S000006040 - symbol:DBP1 "Putative ATP-dependent RNA ... 735 9.6e-73 1
ASPGD|ASPL0000077157 - symbol:AN10557 species:162425 "Eme... 733 1.6e-72 1
POMBASE|SPBP8B7.16c - symbol:dbp2 "ATP-dependent RNA heli... 733 1.6e-72 1
FB|FBgn0029979 - symbol:CG10777 species:7227 "Drosophila ... 710 2.3e-72 2
ZFIN|ZDB-GENE-030131-1565 - symbol:ddx3 "DEAD (Asp-Glu-Al... 731 2.5e-72 1
DICTYBASE|DDB_G0275443 - symbol:helB1 "putative RNA splic... 735 4.4e-72 1
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer... 727 6.7e-72 1
FB|FBgn0263231 - symbol:bel "belle" species:7227 "Drosoph... 726 8.6e-72 1
POMBASE|SPCC1795.11 - symbol:sum3 "translation initiation... 713 2.1e-70 1
GENEDB_PFALCIPARUM|PF14_0437 - symbol:PF14_0437 "helicase... 709 5.5e-70 1
UNIPROTKB|Q8IL13 - symbol:PF14_0437 "Helicase, putative" ... 709 5.5e-70 1
UNIPROTKB|A4QSS5 - symbol:DBP2 "ATP-dependent RNA helicas... 704 1.8e-69 1
FB|FBgn0003261 - symbol:Rm62 "Rm62" species:7227 "Drosoph... 703 2.4e-69 1
CGD|CAL0005725 - symbol:PRP5 species:5476 "Candida albica... 698 8.0e-69 1
UNIPROTKB|Q5ADL0 - symbol:PRP5 "Pre-mRNA-processing ATP-d... 698 8.0e-69 1
ZFIN|ZDB-GENE-030131-18 - symbol:si:dkey-156n14.5 "si:dke... 695 1.7e-68 1
UNIPROTKB|Q91372 - symbol:ddx4 "Probable ATP-dependent RN... 694 2.1e-68 1
WB|WBGene00019245 - symbol:sacy-1 species:6239 "Caenorhab... 387 2.2e-68 2
UNIPROTKB|F1NM08 - symbol:DDX5 "Uncharacterized protein" ... 692 3.5e-68 1
UNIPROTKB|F1NXI3 - symbol:DDX5 "Uncharacterized protein" ... 692 3.5e-68 1
ZFIN|ZDB-GENE-030131-925 - symbol:ddx5 "DEAD (Asp-Glu-Ala... 692 3.5e-68 1
UNIPROTKB|P96614 - symbol:cshA "DEAD-box ATP-dependent RN... 365 5.2e-68 2
UNIPROTKB|Q90ZF6 - symbol:olvas "VASA" species:8090 "Oryz... 687 1.2e-67 1
UNIPROTKB|D6RDK4 - symbol:DDX4 "Probable ATP-dependent RN... 685 1.9e-67 1
UNIPROTKB|Q9NQI0 - symbol:DDX4 "Probable ATP-dependent RN... 685 1.9e-67 1
UNIPROTKB|Q81JK1 - symbol:BAS5307 "ATP-dependent RNA heli... 384 2.2e-67 2
TIGR_CMR|BA_5703 - symbol:BA_5703 "ATP-dependent RNA heli... 384 2.2e-67 2
UNIPROTKB|Q65N62 - symbol:cshA "DEAD-box ATP-dependent RN... 371 2.3e-67 2
ZFIN|ZDB-GENE-990415-272 - symbol:vasa "vasa homolog" spe... 684 2.4e-67 1
WARNING: Descriptions of 891 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 2526 (894.3 bits), Expect = 5.0e-267, Sum P(2) = 5.0e-267
Identities = 481/569 (84%), Positives = 510/569 (89%)
Query: 101 IKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGM 160
IKEQYLG KKPKKRVI+PSEKFRFSFDWENTEDTSRDMN LYQNPHEAQLLFGRGFRAGM
Sbjct: 163 IKEQYLGGKKPKKRVIRPSEKFRFSFDWENTEDTSRDMNVLYQNPHEAQLLFGRGFRAGM 222
Query: 161 DRREQKKLAAXXXXXXXXXXXXXXGVXXXXXXXXXXXXXXXXXDLYDTFDMRVDRHWSEK 220
DRREQKK AA G+ D YD+FDMRVDRHWS+K
Sbjct: 223 DRREQKKQAAKHEKEMRDEIRKKDGIVEKPEEAAAQRVREEAADTYDSFDMRVDRHWSDK 282
Query: 221 KLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMA 280
+LEEMTERDWRIFREDFNISYKGS+IPRPMR+W E KLT ELL+AVER GYK PSPIQMA
Sbjct: 283 RLEEMTERDWRIFREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMA 342
Query: 281 AIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELA 340
AIPLGLQQRDVIGIAETGSGKTAAFVLPML YISRLPP+SEENE EGPYAVVMAPTRELA
Sbjct: 343 AIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELA 402
Query: 341 QQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLN 400
QQIEEETVKFAHYLG +V SIVGGQSIEEQG +I QGCE+VIATPGRLIDCLERRYAVLN
Sbjct: 403 QQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLN 462
Query: 401 QCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMP 460
QCNYVVLDEADRMIDMGFEPQV GVLDAMPSSNLKPENE+EELDEK+IYRTTYMFSATMP
Sbjct: 463 QCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMP 522
Query: 461 PAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVF 520
P VERLARKYLRNPVVVTIGTAGK T+LISQHV+MMKESEKF RLQ+LLDELG+KTAIVF
Sbjct: 523 PGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMKESEKFFRLQKLLDELGEKTAIVF 582
Query: 521 VNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDI 580
VNTKKN D +AKNLDK GYRVTTLHGGKSQEQREISLEGFR KRYNVLVATDV GRGIDI
Sbjct: 583 VNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDI 642
Query: 581 PDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPV 640
PDVAHVINYDMP +IEMYTHRIGRTGRAGK+GVAT+FLT HDT+VFYDLKQML+QSNS V
Sbjct: 643 PDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQSNSAV 702
Query: 641 PPELAKHEASKFKPGTIPDRPPRRNDTVF 669
PPELA+HEAS+FKPGT+PDRPPR +DTV+
Sbjct: 703 PPELARHEASRFKPGTVPDRPPRHSDTVY 731
Score = 66 (28.3 bits), Expect = 5.0e-267, Sum P(2) = 5.0e-267
Identities = 13/16 (81%), Positives = 15/16 (93%)
Query: 13 KKPLFLTKAQREQLAL 28
KKP+FLTK QRE+LAL
Sbjct: 23 KKPVFLTKKQREELAL 38
>UNIPROTKB|A6QLB2 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
Uniprot:A6QLB2
Length = 820
Score = 1444 (513.4 bits), Expect = 1.2e-165, Sum P(3) = 1.2e-165
Identities = 279/468 (59%), Positives = 353/468 (75%)
Query: 214 DRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKN 273
DRHWS+KKL+EMT+RDWRIFRED++I+ KG KIP P+R+W + L P +L +++ GYK
Sbjct: 354 DRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKE 413
Query: 274 PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAE-GPYAVV 332
P+PIQ AIP+GLQ RD+IG+AETGSGKTAAF++P+L +I+ LP I E++ GPYA++
Sbjct: 414 PTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAII 473
Query: 333 MAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCL 392
+APTRELAQQIEEET+KF LGI+ V+++GG S E+QGFR+R GCE+VIATPGRLID L
Sbjct: 474 LAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVL 533
Query: 393 ERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRI---- 448
E RY VL++C YVVLDEADRMIDMGFEP V +L+ MP SN KP+ ++ E EK +
Sbjct: 534 ENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFE 593
Query: 449 -----YRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFS 503
YR T MF+ATMPPAVERLAR YLR P VV IG+AGK E + Q V +M ESEK
Sbjct: 594 SGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRK 653
Query: 504 RLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTK 563
+L +L++ D I+FVN KK D++AK+L+K+GY TLHGGK QEQRE +L +
Sbjct: 654 KLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAG 713
Query: 564 RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 623
++LVATDVAGRGIDI DV+ V+NYDM NIE Y HRIGRTGRAGK+GVA TFLT D+
Sbjct: 714 AKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDS 773
Query: 624 DVFYDLKQMLIQSN-SPVPPELAKHEASKFKPGTIPDRPPRRNDTVFA 670
VFY+LKQ +++S S PPELA H ++ KPGTI + RR +T+FA
Sbjct: 774 AVFYELKQAILESPVSSCPPELANHPDAQHKPGTILTKK-RREETIFA 820
Score = 159 (61.0 bits), Expect = 1.2e-165, Sum P(3) = 1.2e-165
Identities = 32/67 (47%), Positives = 48/67 (71%)
Query: 101 IKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGM 160
IKE+YLG K ++R +++ +F F+W+ +EDTS D N LY+ H+ QLL GRGF AG+
Sbjct: 250 IKERYLGGIKKRRRTRHLNDR-KFVFEWDASEDTSIDYNPLYKERHQVQLL-GRGFIAGI 307
Query: 161 DRREQKK 167
D ++QK+
Sbjct: 308 DLKQQKR 314
Score = 46 (21.3 bits), Expect = 1.2e-165, Sum P(3) = 1.2e-165
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 14 KPLFLTKAQREQLAL 28
KP FL+KA+RE AL
Sbjct: 160 KPKFLSKAEREAEAL 174
>UNIPROTKB|E2RTL6 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
NextBio:20853071 Uniprot:E2RTL6
Length = 820
Score = 1444 (513.4 bits), Expect = 1.2e-165, Sum P(3) = 1.2e-165
Identities = 279/468 (59%), Positives = 353/468 (75%)
Query: 214 DRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKN 273
DRHWS+KKL+EMT+RDWRIFRED++I+ KG KIP P+R+W + L P +L +++ GYK
Sbjct: 354 DRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKE 413
Query: 274 PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAE-GPYAVV 332
P+PIQ AIP+GLQ RD+IG+AETGSGKTAAF++P+L +I+ LP I E++ GPYA++
Sbjct: 414 PTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAII 473
Query: 333 MAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCL 392
+APTRELAQQIEEET+KF LGI+ V+++GG S E+QGFR+R GCE+VIATPGRLID L
Sbjct: 474 LAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVL 533
Query: 393 ERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRI---- 448
E RY VL++C YVVLDEADRMIDMGFEP V +L+ MP SN KP+ ++ E EK +
Sbjct: 534 ENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFE 593
Query: 449 -----YRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFS 503
YR T MF+ATMPPAVERLAR YLR P VV IG+AGK E + Q V +M ESEK
Sbjct: 594 SGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRK 653
Query: 504 RLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTK 563
+L +L++ D I+FVN KK D++AK+L+K+GY TLHGGK QEQRE +L +
Sbjct: 654 KLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAG 713
Query: 564 RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 623
++LVATDVAGRGIDI DV+ V+NYDM NIE Y HRIGRTGRAGK+GVA TFLT D+
Sbjct: 714 AKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDS 773
Query: 624 DVFYDLKQMLIQSN-SPVPPELAKHEASKFKPGTIPDRPPRRNDTVFA 670
VFY+LKQ +++S S PPELA H ++ KPGTI + RR +T+FA
Sbjct: 774 AVFYELKQAILESPVSSCPPELANHPDAQHKPGTILTKK-RREETIFA 820
Score = 159 (61.0 bits), Expect = 1.2e-165, Sum P(3) = 1.2e-165
Identities = 32/67 (47%), Positives = 48/67 (71%)
Query: 101 IKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGM 160
IKE+YLG K ++R +++ +F F+W+ +EDTS D N LY+ H+ QLL GRGF AG+
Sbjct: 250 IKERYLGGIKKRRRTRHLNDR-KFVFEWDASEDTSIDYNPLYKERHQVQLL-GRGFIAGI 307
Query: 161 DRREQKK 167
D ++QK+
Sbjct: 308 DLKQQKR 314
Score = 46 (21.3 bits), Expect = 1.2e-165, Sum P(3) = 1.2e-165
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 14 KPLFLTKAQREQLAL 28
KP FL+KA+RE AL
Sbjct: 160 KPKFLSKAEREAEAL 174
>UNIPROTKB|Q9BUQ8 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=IC]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
Uniprot:Q9BUQ8
Length = 820
Score = 1444 (513.4 bits), Expect = 1.2e-165, Sum P(3) = 1.2e-165
Identities = 279/468 (59%), Positives = 353/468 (75%)
Query: 214 DRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKN 273
DRHWS+KKL+EMT+RDWRIFRED++I+ KG KIP P+R+W + L P +L +++ GYK
Sbjct: 354 DRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKE 413
Query: 274 PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAE-GPYAVV 332
P+PIQ AIP+GLQ RD+IG+AETGSGKTAAF++P+L +I+ LP I E++ GPYA++
Sbjct: 414 PTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAII 473
Query: 333 MAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCL 392
+APTRELAQQIEEET+KF LGI+ V+++GG S E+QGFR+R GCE+VIATPGRLID L
Sbjct: 474 LAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVL 533
Query: 393 ERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRI---- 448
E RY VL++C YVVLDEADRMIDMGFEP V +L+ MP SN KP+ ++ E EK +
Sbjct: 534 ENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFE 593
Query: 449 -----YRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFS 503
YR T MF+ATMPPAVERLAR YLR P VV IG+AGK E + Q V +M ESEK
Sbjct: 594 SGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRK 653
Query: 504 RLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTK 563
+L +L++ D I+FVN KK D++AK+L+K+GY TLHGGK QEQRE +L +
Sbjct: 654 KLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAG 713
Query: 564 RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 623
++LVATDVAGRGIDI DV+ V+NYDM NIE Y HRIGRTGRAGK+GVA TFLT D+
Sbjct: 714 AKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDS 773
Query: 624 DVFYDLKQMLIQSN-SPVPPELAKHEASKFKPGTIPDRPPRRNDTVFA 670
VFY+LKQ +++S S PPELA H ++ KPGTI + RR +T+FA
Sbjct: 774 AVFYELKQAILESPVSSCPPELANHPDAQHKPGTILTKK-RREETIFA 820
Score = 159 (61.0 bits), Expect = 1.2e-165, Sum P(3) = 1.2e-165
Identities = 32/67 (47%), Positives = 48/67 (71%)
Query: 101 IKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGM 160
IKE+YLG K ++R +++ +F F+W+ +EDTS D N LY+ H+ QLL GRGF AG+
Sbjct: 250 IKERYLGGIKKRRRTRHLNDR-KFVFEWDASEDTSIDYNPLYKERHQVQLL-GRGFIAGI 307
Query: 161 DRREQKK 167
D ++QK+
Sbjct: 308 DLKQQKR 314
Score = 46 (21.3 bits), Expect = 1.2e-165, Sum P(3) = 1.2e-165
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 14 KPLFLTKAQREQLAL 28
KP FL+KA+RE AL
Sbjct: 160 KPKFLSKAEREAEAL 174
>RGD|1308685 [details] [associations]
symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
Length = 819
Score = 1444 (513.4 bits), Expect = 1.2e-165, Sum P(3) = 1.2e-165
Identities = 279/468 (59%), Positives = 353/468 (75%)
Query: 214 DRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKN 273
DRHWS+KKL+EMT+RDWRIFRED++I+ KG KIP P+R+W + L P +L +++ GYK
Sbjct: 353 DRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKE 412
Query: 274 PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAE-GPYAVV 332
P+PIQ AIP+GLQ RD+IG+AETGSGKTAAF++P+L +I+ LP I E++ GPYA++
Sbjct: 413 PTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAII 472
Query: 333 MAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCL 392
+APTRELAQQIEEET+KF LGI+ V+++GG S E+QGFR+R GCE+VIATPGRLID L
Sbjct: 473 LAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVL 532
Query: 393 ERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRI---- 448
E RY VL++C YVVLDEADRMIDMGFEP V +L+ MP SN KP+ ++ E EK +
Sbjct: 533 ENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFE 592
Query: 449 -----YRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFS 503
YR T MF+ATMPPAVERLAR YLR P VV IG+AGK E + Q V +M ESEK
Sbjct: 593 SGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRK 652
Query: 504 RLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTK 563
+L +L++ D I+FVN KK D++AK+L+K+GY TLHGGK QEQRE +L +
Sbjct: 653 KLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAG 712
Query: 564 RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 623
++LVATDVAGRGIDI DV+ V+NYDM NIE Y HRIGRTGRAGK+GVA TFLT D+
Sbjct: 713 AKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDS 772
Query: 624 DVFYDLKQMLIQSN-SPVPPELAKHEASKFKPGTIPDRPPRRNDTVFA 670
VFY+LKQ +++S S PPELA H ++ KPGTI + RR +T+FA
Sbjct: 773 AVFYELKQAILESPVSSCPPELANHPDAQHKPGTILTKK-RREETIFA 819
Score = 159 (61.0 bits), Expect = 1.2e-165, Sum P(3) = 1.2e-165
Identities = 32/67 (47%), Positives = 48/67 (71%)
Query: 101 IKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGM 160
IKE+YLG K ++R +++ +F F+W+ +EDTS D N LY+ H+ QLL GRGF AG+
Sbjct: 249 IKERYLGGIKKRRRTRHLNDR-KFVFEWDASEDTSIDYNPLYKERHQVQLL-GRGFIAGI 306
Query: 161 DRREQKK 167
D ++QK+
Sbjct: 307 DLKQQKR 313
Score = 46 (21.3 bits), Expect = 1.2e-165, Sum P(3) = 1.2e-165
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 14 KPLFLTKAQREQLAL 28
KP FL+KA+RE AL
Sbjct: 159 KPKFLSKAEREAEAL 173
>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
Length = 807
Score = 1445 (513.7 bits), Expect = 1.1e-164, Sum P(3) = 1.1e-164
Identities = 280/468 (59%), Positives = 352/468 (75%)
Query: 214 DRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKN 273
DRHWS+KKL+EMT+RDWRIFRED++I+ KG KIP P+RNW E L P +L +E+ GYK+
Sbjct: 341 DRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRNWKEYSLPPHILEVIEKCGYKD 400
Query: 274 PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISE-ENEAEGPYAVV 332
P+PIQ AIP+GLQ RD+IG+AETGSGKTAAF++P+L +I+ LP I E+ +GPYA++
Sbjct: 401 PTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEDSDQGPYAII 460
Query: 333 MAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCL 392
+APTRELAQQIEEET+KF LGI+ V+++GG S E+QGFR+R GCE+VIATPGRLID L
Sbjct: 461 LAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVL 520
Query: 393 ERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRI---- 448
E RY VL++C YVVLDEADRMIDMGFEP V +L+ +P +N KP+ +D E EK +
Sbjct: 521 ENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEYIPVTNQKPDTDDAEDPEKMMQNFE 580
Query: 449 -----YRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFS 503
YR T MF+ATMPPAVERLAR YLR P VV IG+AGK E + Q V++M E EK
Sbjct: 581 SGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVILMSEGEKRK 640
Query: 504 RLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTK 563
+L +L + I+FVN KK D++AK+L+K+GY TLHGGK QEQRE +L +
Sbjct: 641 KLLEVLASGFEPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAG 700
Query: 564 RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 623
++LVATDVAGRGIDI DV+ V+NYDM NIE Y HRIGRTGRAGK+GVA TFLT D+
Sbjct: 701 AKDILVATDVAGRGIDIQDVSMVLNYDMAKNIEDYIHRIGRTGRAGKSGVAMTFLTKEDS 760
Query: 624 DVFYDLKQMLIQSN-SPVPPELAKHEASKFKPGTIPDRPPRRNDTVFA 670
VFYDLKQ +++S S PPELA H ++ KPGTI + RR +T+FA
Sbjct: 761 SVFYDLKQAILESPVSTCPPELANHPDAQHKPGTILTKK-RREETIFA 807
Score = 154 (59.3 bits), Expect = 1.1e-164, Sum P(3) = 1.1e-164
Identities = 29/67 (43%), Positives = 47/67 (70%)
Query: 101 IKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGM 160
IKE+YLG K ++R +++ +F F+W+ +EDTS D N +Y+ H+ L +GRGF AG+
Sbjct: 237 IKERYLGGMKKRRRTRHLNDR-KFVFEWDASEDTSIDYNPIYKEKHQVHL-YGRGFIAGI 294
Query: 161 DRREQKK 167
D ++QK+
Sbjct: 295 DLKQQKR 301
Score = 41 (19.5 bits), Expect = 1.1e-164, Sum P(3) = 1.1e-164
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 14 KPLFLTKAQREQLAL 28
KP FL+K++RE A+
Sbjct: 147 KPKFLSKSEREAEAI 161
>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
symbol:PFE0925c "snrnp protein, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 1337 (475.7 bits), Expect = 1.1e-162, Sum P(3) = 1.1e-162
Identities = 258/463 (55%), Positives = 342/463 (73%)
Query: 214 DRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKN 273
++HWS+K EEMT+RDWRIFRED I KG +P P+R W E L+ +LL+A+++ Y+
Sbjct: 661 EKHWSQKSREEMTDRDWRIFREDNEIYIKGGVVPPPIRKWEESNLSNDLLKAIKKAKYEK 720
Query: 274 PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVM 333
P+PIQM AIP+ L+ RD+IGIAETGSGKTAAFVLPML+Y+ +LPP++ E +GPYA+V+
Sbjct: 721 PTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLTYETSQDGPYALVI 780
Query: 334 APTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLE 393
AP+RELA QI EET KFA Y + V++VGG++ E Q F +R+G E+VI TPGRL DCLE
Sbjct: 781 APSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQAFELRRGVEIVIGTPGRLQDCLE 840
Query: 394 RRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE----DEELDEK--- 446
+ Y VLNQCNYV+LDEADRM+DMGFE V +LD +P+SNLK E++ EE+ K
Sbjct: 841 KAYTVLNQCNYVILDEADRMMDMGFEDTVHYILDKIPTSNLKSEDDALALQEEMMTKAGH 900
Query: 447 RIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQ 506
R+YR T MFSATMPP+VERL+RKYLR P ++IG G I Q + + E +K +LQ
Sbjct: 901 RLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAGKRSIEQKLEFLTEGKKKQKLQ 960
Query: 507 RLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYN 566
+L E+ + IVFVN KK AD+++K++ K+ Y+ LHGGK+QE RE +L F+ ++
Sbjct: 961 EIL-EMYEPPIIVFVNQKKVADIISKSITKMKYKAVALHGGKAQEIREQTLSAFKNAEFD 1019
Query: 567 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVF 626
+LVATDVAGRGID+ V VIN+DMP +IE YTHRIGRTGRAG G+A +F+T HD+ +F
Sbjct: 1020 ILVATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAGMKGLAISFITEHDSHLF 1079
Query: 627 YDLKQMLIQSNSPVPPELAKHEASKFKPGTIPDRPPRRNDTVF 669
YDLKQ LI SN+ VP ELA + ASK KPGT+ + P++N ++
Sbjct: 1080 YDLKQFLISSNNIVPLELANNPASKVKPGTVM-QTPKKNQILY 1121
Score = 221 (82.9 bits), Expect = 1.1e-162, Sum P(3) = 1.1e-162
Identities = 45/70 (64%), Positives = 55/70 (78%)
Query: 101 IKEQYLGSKKPKKRVIKPSEKFR--FSFDWENTEDTSR-DMNALYQNPHEAQLLFGRGFR 157
IK+QYLG K KK++ KPSEKFR F+F+W+ +EDTSR D N LYQN E QLLFGRG+
Sbjct: 456 IKQQYLGLNKTKKKIQKPSEKFRNIFNFEWDQSEDTSRNDSNPLYQNRLEPQLLFGRGYI 515
Query: 158 AGMDRREQKK 167
AG+D REQ+K
Sbjct: 516 AGIDVREQRK 525
Score = 63 (27.2 bits), Expect = 1.1e-162, Sum P(3) = 1.1e-162
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 10 SNNKKPLFLTKAQREQ 25
SNN+KP+FLTK +RE+
Sbjct: 271 SNNEKPVFLTKKEREE 286
>UNIPROTKB|Q8I0W7 [details] [associations]
symbol:PFE0925c "Snrnp protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 1337 (475.7 bits), Expect = 1.1e-162, Sum P(3) = 1.1e-162
Identities = 258/463 (55%), Positives = 342/463 (73%)
Query: 214 DRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKN 273
++HWS+K EEMT+RDWRIFRED I KG +P P+R W E L+ +LL+A+++ Y+
Sbjct: 661 EKHWSQKSREEMTDRDWRIFREDNEIYIKGGVVPPPIRKWEESNLSNDLLKAIKKAKYEK 720
Query: 274 PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVM 333
P+PIQM AIP+ L+ RD+IGIAETGSGKTAAFVLPML+Y+ +LPP++ E +GPYA+V+
Sbjct: 721 PTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLTYETSQDGPYALVI 780
Query: 334 APTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLE 393
AP+RELA QI EET KFA Y + V++VGG++ E Q F +R+G E+VI TPGRL DCLE
Sbjct: 781 APSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQAFELRRGVEIVIGTPGRLQDCLE 840
Query: 394 RRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE----DEELDEK--- 446
+ Y VLNQCNYV+LDEADRM+DMGFE V +LD +P+SNLK E++ EE+ K
Sbjct: 841 KAYTVLNQCNYVILDEADRMMDMGFEDTVHYILDKIPTSNLKSEDDALALQEEMMTKAGH 900
Query: 447 RIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQ 506
R+YR T MFSATMPP+VERL+RKYLR P ++IG G I Q + + E +K +LQ
Sbjct: 901 RLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAGKRSIEQKLEFLTEGKKKQKLQ 960
Query: 507 RLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYN 566
+L E+ + IVFVN KK AD+++K++ K+ Y+ LHGGK+QE RE +L F+ ++
Sbjct: 961 EIL-EMYEPPIIVFVNQKKVADIISKSITKMKYKAVALHGGKAQEIREQTLSAFKNAEFD 1019
Query: 567 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVF 626
+LVATDVAGRGID+ V VIN+DMP +IE YTHRIGRTGRAG G+A +F+T HD+ +F
Sbjct: 1020 ILVATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAGMKGLAISFITEHDSHLF 1079
Query: 627 YDLKQMLIQSNSPVPPELAKHEASKFKPGTIPDRPPRRNDTVF 669
YDLKQ LI SN+ VP ELA + ASK KPGT+ + P++N ++
Sbjct: 1080 YDLKQFLISSNNIVPLELANNPASKVKPGTVM-QTPKKNQILY 1121
Score = 221 (82.9 bits), Expect = 1.1e-162, Sum P(3) = 1.1e-162
Identities = 45/70 (64%), Positives = 55/70 (78%)
Query: 101 IKEQYLGSKKPKKRVIKPSEKFR--FSFDWENTEDTSR-DMNALYQNPHEAQLLFGRGFR 157
IK+QYLG K KK++ KPSEKFR F+F+W+ +EDTSR D N LYQN E QLLFGRG+
Sbjct: 456 IKQQYLGLNKTKKKIQKPSEKFRNIFNFEWDQSEDTSRNDSNPLYQNRLEPQLLFGRGYI 515
Query: 158 AGMDRREQKK 167
AG+D REQ+K
Sbjct: 516 AGIDVREQRK 525
Score = 63 (27.2 bits), Expect = 1.1e-162, Sum P(3) = 1.1e-162
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 10 SNNKKPLFLTKAQREQ 25
SNN+KP+FLTK +RE+
Sbjct: 271 SNNEKPVFLTKKEREE 286
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 1408 (500.7 bits), Expect = 8.6e-161, Sum P(3) = 8.6e-161
Identities = 281/470 (59%), Positives = 345/470 (73%)
Query: 214 DRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKN 273
DRHWSEK+ +EMTERDWRIFRED+N++ KG +IP P+R+W E E++ +++VGYK
Sbjct: 357 DRHWSEKENDEMTERDWRIFREDYNVTIKGGRIPNPIRSWNESGFPKEIIDIIDKVGYKE 416
Query: 274 PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISE-ENEAEGPYAVV 332
P+PIQ AIP+GLQ RD+IG+AETGSGKT AF++P+L++I LP I E+ +GPYA++
Sbjct: 417 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVDQGPYAII 476
Query: 333 MAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCL 392
MAPTRELAQQIEEET KF LGI+ V +VGG S EEQGFR+R GCE+VIATPGRLID L
Sbjct: 477 MAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 536
Query: 393 ERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDE------- 445
E RY VLNQC Y+VLDEADRMIDMGFEP V +L+ MP +NLKP+ E+ E DE
Sbjct: 537 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAE-DETKLMENF 595
Query: 446 --KRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFS 503
K+ YR T MF+ATMPPAVERLAR YLR P V IG+ GK TE Q V MM E++K
Sbjct: 596 YTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERTEQIVYMMGENDKRK 655
Query: 504 RLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTK 563
+L +L D I+FVN KK AD++AK L+KLGY TLHGGK QEQRE +L ++
Sbjct: 656 KLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREYALAALKSG 715
Query: 564 RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 623
++LVATDVAGRGIDI DV+ VINYDM IE YTHRIGRTGRAGKTG A +F+T D+
Sbjct: 716 AKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAGKTGCAISFVTKDDS 775
Query: 624 DVFYDLKQMLIQSNSPV---PPELAKHEASKFKPGTIPDRPPRRNDTVFA 670
+FYDLKQ + S SPV PPEL H ++ KPGT+ + RR + +FA
Sbjct: 776 ALFYDLKQCV--SASPVSTCPPELMNHPEAQHKPGTVVTKK-RREEKIFA 822
Score = 153 (58.9 bits), Expect = 8.6e-161, Sum P(3) = 8.6e-161
Identities = 33/67 (49%), Positives = 46/67 (68%)
Query: 101 IKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGM 160
I+E+YLG K K+RV + +++ +F FDW+ EDTS D N LY+ H Q FGRG AG+
Sbjct: 253 IRERYLGIIKKKRRVRRLNDR-KFVFDWDAGEDTSIDYNNLYKERHHVQF-FGRGNVAGI 310
Query: 161 DRREQKK 167
D +EQK+
Sbjct: 311 DIKEQKR 317
Score = 42 (19.8 bits), Expect = 8.6e-161, Sum P(3) = 8.6e-161
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 14 KPLFLTKAQR 23
KP+FLTK QR
Sbjct: 147 KPVFLTKEQR 156
Score = 40 (19.1 bits), Expect = 7.0e-149, Sum P(3) = 7.0e-149
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 102 KEQY-LGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGR 154
KEQ + KK K++ K R + EN E T RD +++ + + GR
Sbjct: 336 KEQEKVRLKKMKRKEDKQKWDDRHWSEKENDEMTERDWR-IFREDYNVTIKGGR 388
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 1356 (482.4 bits), Expect = 1.8e-156, Sum P(3) = 1.8e-156
Identities = 265/466 (56%), Positives = 341/466 (73%)
Query: 214 DRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKN 273
DRHW K+L EM++RDWRIFREDFNIS KG ++PRP+RNW E E+ +AV+ +GY
Sbjct: 264 DRHWRMKELSEMSDRDWRIFREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLE 323
Query: 274 PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAE-GPYAVV 332
P+PIQ AIP+GLQ RDVIG+AETGSGKTAAF+LP+L +I+ LP + + + GPYA++
Sbjct: 324 PTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAII 383
Query: 333 MAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCL 392
MAPTRELAQQIEEET KF LGIK VS++GG S E+QG ++R G EVVIATPGRL+D L
Sbjct: 384 MAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVEVVIATPGRLLDVL 443
Query: 393 ERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDE------- 445
E RY +LNQC YV+LDEADRM+DMGFEP V VL+ MP +N+K + ++ + +E
Sbjct: 444 ENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDTDEFDNEEALMKGFS 503
Query: 446 -KRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSR 504
+ YR T MF+ATM A+ERLAR+YLR P VV IG+AGK TE + Q V M+ E K +
Sbjct: 504 TREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTERVEQVVYMVPEDRKRKK 563
Query: 505 LQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKR 564
L +L+ I+FVN KK ADM++K L KLG++ T LHGGK Q+QRE +L+ +
Sbjct: 564 LVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGT 623
Query: 565 YNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTD 624
++LVATDVAGRGID+ DV+ V+NYDM +IE YTHRIGRTGRAGK G A TFLT DT
Sbjct: 624 SDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTPDDTA 683
Query: 625 VFYDLKQMLIQSN-SPVPPELAKHEASKFKPGTIPDRPPRRNDTVF 669
V++DLKQ+L++S S PPELA H ++ KPG + R+++T+F
Sbjct: 684 VYFDLKQVLVESPVSSCPPELANHPDAQSKPGVFTSKK-RQDETLF 728
Score = 159 (61.0 bits), Expect = 1.8e-156, Sum P(3) = 1.8e-156
Identities = 33/67 (49%), Positives = 44/67 (65%)
Query: 101 IKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGM 160
+K++YLG +K KK+ + + +F FDW+ EDTS+D N LYQ+ HE Q FGRG AG
Sbjct: 159 VKDRYLGKQKEKKKRGRRLHEKKFVFDWDAGEDTSQDYNKLYQSRHEIQF-FGRGSVAGT 217
Query: 161 DRREQKK 167
D QKK
Sbjct: 218 DVNAQKK 224
Score = 47 (21.6 bits), Expect = 1.8e-156, Sum P(3) = 1.8e-156
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 14 KPLFLTKAQREQLAL 28
KP FL+KA+R LAL
Sbjct: 24 KPKFLSKAERAALAL 38
>DICTYBASE|DDB_G0277857 [details] [associations]
symbol:helB2 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
OMA:DRYRDND Uniprot:Q54Y81
Length = 834
Score = 1374 (488.7 bits), Expect = 6.5e-151, Sum P(2) = 6.5e-151
Identities = 259/451 (57%), Positives = 339/451 (75%)
Query: 214 DRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKN 273
D HWS+K L+ MT+RDW IF+EDFNIS KG P P+R W E L E+L A+ ++GY+
Sbjct: 376 DTHWSKKPLKSMTKRDWHIFKEDFNISTKGGIAPNPIRTWQESNLPREILEAIRQLGYEK 435
Query: 274 PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVM 333
PSPIQM +IP+ L RD++GIAETGSGKT AFV+PML YIS+ P ++++ EA+GPYA+VM
Sbjct: 436 PSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPMLIYISKQPRLTKDTEADGPYALVM 495
Query: 334 APTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLE 393
APTREL QQIE+ET FA + G +VVS+VGGQSIE+Q +++ +GCE++IATPGRL DCLE
Sbjct: 496 APTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQAYQVSKGCEIIIATPGRLNDCLE 555
Query: 394 RRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENED----EELDEKRIY 449
+RY VLNQCNY+VLDEAD MID+GFEPQV VLDAMPSS LK E+++ +E D IY
Sbjct: 556 KRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVLDAMPSSFLKSEDDEMAEKQESDRSHIY 615
Query: 450 RTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMK-ESEKFSRLQRL 508
RTT +FSATMPP VE+L++KYLR P +TIG AGK + I Q V+ +K E++K L +L
Sbjct: 616 RTTILFSATMPPLVEKLSKKYLRRPCTITIGEAGKVVDRIRQTVIFVKSENDKKEHLTQL 675
Query: 509 LDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVL 568
+ + I+FVN KK+ D++A L++ T LH G+SQEQRE +LEGF+ ++Y VL
Sbjct: 676 IKDGPPPPIIIFVNKKKHCDIIAPVLEECRVSYTILHSGRSQEQREAALEGFKKRKYEVL 735
Query: 569 VATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYD 628
+AT VA RGI + V HVIN+D+P NIE YTHRIGRTGRAG G+A++F+T D ++ YD
Sbjct: 736 IATGVASRGIHVDGVTHVINFDIPKNIEDYTHRIGRTGRAGSAGLASSFITDKDVEIMYD 795
Query: 629 LKQMLIQSNSPVPPELAKHEASKFKPGTIPD 659
LKQ+L +N+ VP EL KH +S+ K G+ D
Sbjct: 796 LKQILTSTNNIVPIELLKHPSSQQKHGSSKD 826
Score = 120 (47.3 bits), Expect = 6.5e-151, Sum P(2) = 6.5e-151
Identities = 25/62 (40%), Positives = 35/62 (56%)
Query: 101 IKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGM 160
IK Y+G K+ + R EK +F F+W+++EDTS D N LY E Q FG G G
Sbjct: 266 IKVDYMGIKRDENRKKIKGEKGKFVFEWDSSEDTSSDYNTLYTKKLEIQPQFGHGNFGGY 325
Query: 161 DR 162
++
Sbjct: 326 EK 327
>ASPGD|ASPL0000051195 [details] [associations]
symbol:AN1634 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
Length = 782
Score = 1328 (472.5 bits), Expect = 2.1e-149, Sum P(3) = 2.1e-149
Identities = 268/457 (58%), Positives = 334/457 (73%)
Query: 212 RVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGY 271
++D+HWSEKKLE M ERDWRIF+EDFNI+ KG +P PMR+W E L LL V+RVGY
Sbjct: 307 QLDKHWSEKKLEHMRERDWRIFKEDFNIATKGGSVPNPMRSWDESGLPKRLLELVDRVGY 366
Query: 272 KNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISE-E-NEAEGPY 329
K P+PIQ AAIP+ +Q RD+IG+A TGSGKTAAF+LP+L YI+ LP I E E + +GPY
Sbjct: 367 KEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKNDGPY 426
Query: 330 AVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLI 389
A+V+APTRELAQQIE E KF LG VVSIVGG S EEQ + +R G E++IATPGRL+
Sbjct: 427 AIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLV 486
Query: 390 DCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEE------- 442
DC+ERR VL+QC YV++DEADRMID+GFE V +LDA+P +N KP+ E+ E
Sbjct: 487 DCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTEEAEDSSAMSR 546
Query: 443 -LDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMK-ESE 500
L K YR T M++ATMP AVER+ARKYLR P +VTIG+AG+A + + Q V M+ E +
Sbjct: 547 HLGSKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDTVEQRVEMIAGEDK 606
Query: 501 KFSRLQRLLDELGD--KTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLE 558
+ RL +L GD IVFVN K+N D +A+ + + G+ TLHG K+QEQRE +L
Sbjct: 607 RKKRLGEILSS-GDFRPPIIVFVNIKRNCDAIAREIKQWGFSSVTLHGSKTQEQREAALA 665
Query: 559 GFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFL 618
R +VLVATD+AGRGID+PDV+ VIN++M +IE YTHRIGRTGRAGK+GVA TFL
Sbjct: 666 SVRNGSTDVLVATDLAGRGIDVPDVSLVINFNMATSIESYTHRIGRTGRAGKSGVAITFL 725
Query: 619 TFHDTDVFYDLKQMLIQSN-SPVPPELAKHEASKFKP 654
D DV YDLKQMLI+S S VP EL KHEA++ KP
Sbjct: 726 GNEDADVMYDLKQMLIKSPISRVPEELRKHEAAQSKP 762
Score = 117 (46.2 bits), Expect = 2.1e-149, Sum P(3) = 2.1e-149
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 101 IKEQYLGSKKPK----KRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGF 156
IK++Y+G+ + K+ K + +F+F+W EDTS D N LYQ+ HEA FGRG
Sbjct: 199 IKQRYMGADQTSNFSAKKKRKRTTDRKFNFEWNAEEDTSGDYNPLYQHRHEANF-FGRGR 257
Query: 157 RAG 159
AG
Sbjct: 258 LAG 260
Score = 50 (22.7 bits), Expect = 2.1e-149, Sum P(3) = 2.1e-149
Identities = 9/15 (60%), Positives = 14/15 (93%)
Query: 14 KPLFLTKAQREQLAL 28
+P F++KA+RE+LAL
Sbjct: 89 RPKFMSKAERERLAL 103
>UNIPROTKB|I3LNN1 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:PIRNWKE Ensembl:ENSSSCT00000027880 Uniprot:I3LNN1
Length = 801
Score = 822 (294.4 bits), Expect = 2.1e-135, Sum P(4) = 2.1e-135
Identities = 148/236 (62%), Positives = 191/236 (80%)
Query: 214 DRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKN 273
DRHWS+KKL+EMT+RDWRIFRED++I+ KG KIP P+R+W + L P +L +++ GYK
Sbjct: 354 DRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKE 413
Query: 274 PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAE-GPYAVV 332
P+PIQ AIP+GLQ RD+IG+AETGSGKTAAF++P+L +I+ LP I E++ GPYA++
Sbjct: 414 PTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAII 473
Query: 333 MAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCL 392
+APTRELAQQIEEET+KF LGI+ V+++GG S E+QGFR+R GCE+VIATPGRLID L
Sbjct: 474 LAPTRELAQQIEEETIKFGKPLGIRPVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVL 533
Query: 393 ERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRI 448
E RY VL++C YVVLDEADRMIDMGFEP V +L+ MP SN KP+ ++ E EK +
Sbjct: 534 ENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKML 589
Score = 346 (126.9 bits), Expect = 2.1e-135, Sum P(4) = 2.1e-135
Identities = 70/118 (59%), Positives = 84/118 (71%)
Query: 539 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMY 598
Y TLHGGK QEQRE +L + ++LVATDVAGRGIDI DV+ V+NYDM NIE Y
Sbjct: 670 YNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDY 729
Query: 599 THRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN-SPVPPELAKHEASKFKPG 655
HRIGRTGRAGK+GVA TFLT D+ VFY+LKQ +++S S +PP L K S + G
Sbjct: 730 IHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSAIPPALEKQGGSGHREG 787
Score = 159 (61.0 bits), Expect = 2.1e-135, Sum P(4) = 2.1e-135
Identities = 32/67 (47%), Positives = 48/67 (71%)
Query: 101 IKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGM 160
IKE+YLG K ++R +++ +F F+W+ +EDTS D N LY+ H+ QLL GRGF AG+
Sbjct: 250 IKERYLGGIKKRRRTRHLNDR-KFVFEWDASEDTSIDYNPLYKERHQVQLL-GRGFIAGI 307
Query: 161 DRREQKK 167
D ++QK+
Sbjct: 308 DLKQQKR 314
Score = 46 (21.3 bits), Expect = 2.1e-135, Sum P(4) = 2.1e-135
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 14 KPLFLTKAQREQLAL 28
KP FL+KA+RE AL
Sbjct: 160 KPKFLSKAEREAEAL 174
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 1276 (454.2 bits), Expect = 9.7e-133, Sum P(2) = 9.7e-133
Identities = 266/557 (47%), Positives = 362/557 (64%)
Query: 101 IKEQYLGSKKP--KKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRA 158
I+++Y+G K P KKR + ++K +F FDW+ T+DT +D +P +FGRG
Sbjct: 107 IRQRYMGIKPPVVKKRR-RNADK-KFVFDWDATDDTMKDAETS-ASPEATIAVFGRGKLG 163
Query: 159 GMDRREQKKLAAXXXXXXXXXXXXXXGVXXXXXXXXXXXXXXXXXDLYDTFDMRVDRHWS 218
G D + +K + D +D D W
Sbjct: 164 GFDDQSIRKAKSNSGLIQRLLQGTEQDKARAHELIQLQEKRAKKID-WD------DVPWR 216
Query: 219 EKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQ 278
EK LE M RDWRI +ED+NIS KG +P P+RNW E L E+L+ +++V YK PS IQ
Sbjct: 217 EKPLEAMKPRDWRILKEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQ 276
Query: 279 MAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRE 338
AAIP+ LQ++D+IGIAETGSGKTAAF++P++ IS+LPP++E N GPYAVV+APTRE
Sbjct: 277 RAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRE 336
Query: 339 LAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAV 398
LAQQI+ E KFA LG + VS+VGG + EEQ F++ QG +V+ATPGRL+DCLERR V
Sbjct: 337 LAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFV 396
Query: 399 LNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENED--EELDEKRIYRTTYMFS 456
L+QC YVV+DEADRM+DMGFE V +L ++PSSN ++ + R T MFS
Sbjct: 397 LSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFS 456
Query: 457 ATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKE-SEKFSRLQRLLDELG-D 514
AT+PP V LA+ YL PV++TIG G+A + + Q V M+ + S+K+ R++ +L+
Sbjct: 457 ATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEILESNRFS 516
Query: 515 KTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVA 574
I+FVN K+N + +AK L+ +G+ TLHG KSQEQRE ++E R K ++LVATD+A
Sbjct: 517 PPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIA 576
Query: 575 GRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLI 634
GRGIDIP+V+ V+NY+M +IE YTHRIGRTGRAGK+G A TFL DTDV+YDL+ +L
Sbjct: 577 GRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVYYDLRVLLS 636
Query: 635 QS-NSPVPPELAKHEAS 650
+S + +P EL HEA+
Sbjct: 637 RSAKAHIPDELRNHEAA 653
Score = 46 (21.3 bits), Expect = 9.7e-133, Sum P(2) = 9.7e-133
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 14 KPLFLTKAQREQLAL 28
+P FL+KA+R +LAL
Sbjct: 26 RPKFLSKAERARLAL 40
>CGD|CAL0001091 [details] [associations]
symbol:orf19.672 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116 RefSeq:XP_713805.1
RefSeq:XP_713845.1 ProteinModelPortal:Q59W52 GeneID:3644491
GeneID:3644552 KEGG:cal:CaO19.672 KEGG:cal:CaO19.8289
Uniprot:Q59W52
Length = 581
Score = 931 (332.8 bits), Expect = 2.3e-97, Sum P(2) = 2.3e-97
Identities = 193/452 (42%), Positives = 281/452 (62%)
Query: 209 FDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVER 268
F + HW+ K LEEMT+RDWRIF+ED+NI+ KG IP P+R W EG + +L+ + +
Sbjct: 126 FSGQESTHWTNKNLEEMTDRDWRIFKEDYNITTKGKNIPNPLRYWNEGSINDKLVSIISQ 185
Query: 269 VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPP--ISEENEAE 326
+GY+ P+ +Q A+IPL L++RDV+G+AETGSGKT AF++P+L YI + + E +
Sbjct: 186 LGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEKISN 245
Query: 327 GPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQ-GCEVVIATP 385
P +++APTRELA QI +E KF LG +V+ I+GG ++ +I Q G +++ATP
Sbjct: 246 EPVGLILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKIDQTGVHLIVATP 305
Query: 386 GRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDE 445
GRL+D +ER+ L++C +V+DEADRMIDMGFE + VLD +P+ D +
Sbjct: 306 GRLVDSIERKIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEKQLSSTIDGRIFH 365
Query: 446 KRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMK----ESEK 501
R+T MF+AT+ P VE+L +KYL +P + IG AG+A + ISQ + E+ K
Sbjct: 366 LE-KRSTMMFTATISPTVEKLTKKYLIDPGYLYIGGAGEALDNISQSFEFLSSATTEATK 424
Query: 502 FSRLQRLLDELGDKTA----IVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISL 557
F++L +++ T I+F N K D +++ L +HG KSQ+ RE ++
Sbjct: 425 FNKLIKIIRSHWRVTENPLIIIFANFKHVCDSLSQELSSNDINNVVIHGSKSQDMREQAI 484
Query: 558 EGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 617
FR VL+ATDVA RGIDIP+V VINY M + Y HRIGRTGRAG G + TF
Sbjct: 485 TNFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNLGESFTF 544
Query: 618 LTFHDTDVFYDLKQMLIQSNSPVPPELAKHEA 649
++ DT++F LK+ L + +P L KH++
Sbjct: 545 ISDQDTEIFTPLKKFLKKGGKRLPDWLYKHQS 576
Score = 56 (24.8 bits), Expect = 2.3e-97, Sum P(2) = 2.3e-97
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 108 SKKPKKRVIKPSEKFRFSFDWE-NTEDTSRDMNALYQNPHE 147
+ KP + KP+ K +F FDW+ EDT+ L + E
Sbjct: 81 NSKPSIQTKKPTGK-KFQFDWDVEEEDTASGFVPLIEMDEE 120
>UNIPROTKB|Q59W52 [details] [associations]
symbol:PRP28 "Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28" species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116
RefSeq:XP_713805.1 RefSeq:XP_713845.1 ProteinModelPortal:Q59W52
GeneID:3644491 GeneID:3644552 KEGG:cal:CaO19.672
KEGG:cal:CaO19.8289 Uniprot:Q59W52
Length = 581
Score = 931 (332.8 bits), Expect = 2.3e-97, Sum P(2) = 2.3e-97
Identities = 193/452 (42%), Positives = 281/452 (62%)
Query: 209 FDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVER 268
F + HW+ K LEEMT+RDWRIF+ED+NI+ KG IP P+R W EG + +L+ + +
Sbjct: 126 FSGQESTHWTNKNLEEMTDRDWRIFKEDYNITTKGKNIPNPLRYWNEGSINDKLVSIISQ 185
Query: 269 VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPP--ISEENEAE 326
+GY+ P+ +Q A+IPL L++RDV+G+AETGSGKT AF++P+L YI + + E +
Sbjct: 186 LGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEKISN 245
Query: 327 GPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQ-GCEVVIATP 385
P +++APTRELA QI +E KF LG +V+ I+GG ++ +I Q G +++ATP
Sbjct: 246 EPVGLILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKIDQTGVHLIVATP 305
Query: 386 GRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDE 445
GRL+D +ER+ L++C +V+DEADRMIDMGFE + VLD +P+ D +
Sbjct: 306 GRLVDSIERKIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEKQLSSTIDGRIFH 365
Query: 446 KRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMK----ESEK 501
R+T MF+AT+ P VE+L +KYL +P + IG AG+A + ISQ + E+ K
Sbjct: 366 LE-KRSTMMFTATISPTVEKLTKKYLIDPGYLYIGGAGEALDNISQSFEFLSSATTEATK 424
Query: 502 FSRLQRLLDELGDKTA----IVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISL 557
F++L +++ T I+F N K D +++ L +HG KSQ+ RE ++
Sbjct: 425 FNKLIKIIRSHWRVTENPLIIIFANFKHVCDSLSQELSSNDINNVVIHGSKSQDMREQAI 484
Query: 558 EGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 617
FR VL+ATDVA RGIDIP+V VINY M + Y HRIGRTGRAG G + TF
Sbjct: 485 TNFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNLGESFTF 544
Query: 618 LTFHDTDVFYDLKQMLIQSNSPVPPELAKHEA 649
++ DT++F LK+ L + +P L KH++
Sbjct: 545 ISDQDTEIFTPLKKFLKKGGKRLPDWLYKHQS 576
Score = 56 (24.8 bits), Expect = 2.3e-97, Sum P(2) = 2.3e-97
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 108 SKKPKKRVIKPSEKFRFSFDWE-NTEDTSRDMNALYQNPHE 147
+ KP + KP+ K +F FDW+ EDT+ L + E
Sbjct: 81 NSKPSIQTKKPTGK-KFQFDWDVEEEDTASGFVPLIEMDEE 120
>SGD|S000002651 [details] [associations]
symbol:PRP28 "RNA helicase in the DEAD-box family"
species:4932 "Saccharomyces cerevisiae" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005681 "spliceosomal
complex" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0000354 "cis
assembly of pre-catalytic spliceosome" evidence=TAS] [GO:0005682
"U5 snRNP" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002651 GO:GO:0005524
GO:GO:0005737 EMBL:BK006938 GO:GO:0005681 GO:GO:0005682
GO:GO:0003676 EMBL:Z49701 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
RefSeq:NP_010529.3 GeneID:851830 KEGG:sce:YDR243C KO:K12858
HOGENOM:HOG000268796 OrthoDB:EOG4KPXK0 EMBL:X56934 PIR:A39624
RefSeq:NP_878065.3 ProteinModelPortal:P23394 SMR:P23394
DIP:DIP-6324N IntAct:P23394 MINT:MINT-599541 STRING:P23394
PaxDb:P23394 PeptideAtlas:P23394 EnsemblFungi:YDR243C
GeneID:1466436 KEGG:sce:YDR246W-A CYGD:YDR243c OMA:HEMNERD
NextBio:969715 Genevestigator:P23394 GermOnline:YDR243C
Uniprot:P23394
Length = 588
Score = 867 (310.3 bits), Expect = 9.0e-90, Sum P(2) = 9.0e-90
Identities = 193/455 (42%), Positives = 282/455 (61%)
Query: 215 RHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTP-ELLRAV-ERVGYK 272
+HW+EK L EM ERDWRI +ED+ I KG + P+RNW E + P +LLR + + + +
Sbjct: 136 KHWTEKSLHEMNERDWRILKEDYAIVTKGGTVENPLRNWEELNIIPRDLLRVIIQELRFP 195
Query: 273 NPSPIQMAAIP--LGLQQ-RDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEA-EGP 328
+P+PIQ IP ++Q RD +G+A TGSGKT AFV+P+L +SR PP + +GP
Sbjct: 196 SPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFVIPILIKMSRSPPRPPSLKIIDGP 255
Query: 329 YAVVMAPTRELAQQIEEETVKF-------AHYLGIKVVSIVGGQSIEEQGFRIRQGCEVV 381
A+++APTREL QQI++ET K ++Y KV+SIVGG S+EE F + +GC+++
Sbjct: 256 KALILAPTRELVQQIQKETQKVTKIWSKESNY-DCKVISIVGGHSLEEISFSLSEGCDIL 314
Query: 382 IATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDE 441
+ATPGRLID LE V+ Q +VLDEAD+MID+GFE QV +L + N D
Sbjct: 315 VATPGRLIDSLENHLLVMKQVETLVLDEADKMIDLGFEDQVTNILTKVDI------NADS 368
Query: 442 ELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESE- 500
++ R T MF+ATM P +E++A Y++ PV TIG + LI Q V E
Sbjct: 369 AVN-----RQTLMFTATMTPVIEKIAAGYMQKPVYATIGVETGSEPLIQQVVEYADNDED 423
Query: 501 KFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDK-LGYRVTTLHGGKSQEQREISLEG 559
KF +L+ ++ + D I+F+N K+ AD +A+ K +VT LHG KSQEQRE SL+
Sbjct: 424 KFKKLKPIVAKY-DPPIIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQREHSLQL 482
Query: 560 FRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619
FRT + +++AT+VA RG+DIP+V+ V+N+ + ++ Y HRIGRTGRA G A +F++
Sbjct: 483 FRTNKVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRTGRAANEGTAVSFVS 542
Query: 620 F-HDTDVFYDLKQMLIQSNSPVPPELAKHEASKFK 653
D + +L + ++ + P+ + EA K K
Sbjct: 543 AAEDESLIRELYKY-VRKHDPLNSNIFS-EAVKNK 575
Score = 48 (22.0 bits), Expect = 9.0e-90, Sum P(2) = 9.0e-90
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 103 EQYLGSKKPKKRVIKPSEKFRFSFDWENTEDT 134
+ + KKR +F F W +EDT
Sbjct: 72 DSFFNETNDKKRNPSKQNGSKFHFSWNESEDT 103
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
Identities = 172/424 (40%), Positives = 264/424 (62%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
ED + G +P P+ +A+ L L + R Y P+P+Q AIP+ L +RD++
Sbjct: 135 EDIPVETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMAC 194
Query: 295 AETGSGKTAAFVLPMLTYISRLPPISEE--NEAEGPYAVVMAPTRELAQQIEEETVKFAH 352
A+TGSGKTAAF P+++ I + + + A P+AV+++PTRELA QI +E KF++
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSY 254
Query: 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR 412
G+KVV GG I +Q + +GC++++ATPGRL D LER + ++ LDEADR
Sbjct: 255 QTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADR 314
Query: 413 MIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR 472
M+DMGFEPQ+ +++ M ++ P R R T +FSAT P ++RLA ++
Sbjct: 315 MLDMGFEPQIRKIVEQM---DMPP----------RGVRQTMLFSATFPSQIQRLAADFMS 361
Query: 473 NPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLD---ELGDKTAI--VFVNTKKNA 527
N + + +G G +T+LI+Q V ++ES+K S L LL E DK ++ VFV TK+ A
Sbjct: 362 NYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGA 421
Query: 528 DMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVI 587
D + L + T++HG ++Q++RE++L F+T R +LVATDVA RG+DIP VAHV+
Sbjct: 422 DTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVV 481
Query: 588 NYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKH 647
N+D+P +I+ Y HRIGRTGRAGK+G+AT F ++ + L +++ ++N VP L ++
Sbjct: 482 NFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVPEWLTRY 541
Query: 648 EASK 651
AS+
Sbjct: 542 -ASR 544
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 814 (291.6 bits), Expect = 7.6e-81, P = 7.6e-81
Identities = 171/429 (39%), Positives = 255/429 (59%)
Query: 220 KKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQM 279
K + MT+ + +R++ + G +PRP++ W + LT ++L ++++ Y+ P PIQ
Sbjct: 498 KDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQT 557
Query: 280 AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339
A+P+ + RD IG+A+TGSGKT FVLPML +I PP+ +GP +VMAPTREL
Sbjct: 558 QALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA---GDGPIGLVMAPTREL 614
Query: 340 AQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCL---ERRY 396
QQI + KF+ LGI+ V + GG + +Q +++G E+V+ TPGR+ID L +
Sbjct: 615 VQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKI 674
Query: 397 AVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFS 456
L + ++V+DEADRM DMGFEPQ+ ++ N++PE R T +FS
Sbjct: 675 TNLRRVTFLVMDEADRMFDMGFEPQITRIIQ-----NIRPE------------RQTVLFS 717
Query: 457 ATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKT 516
AT P VE LARK L PV + +G + I+Q V + ES++F RL LL E +K
Sbjct: 718 ATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWSEKG 777
Query: 517 AI-VFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAG 575
I VFV +++ D + +++ K Y +LHGGK Q RE ++ F+ N+L+AT VA
Sbjct: 778 KILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAA 837
Query: 576 RGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQ 635
RG+D+ ++ V+N+D P + E Y HR+GRTGRAG+ G A TF++ D DL + L
Sbjct: 838 RGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALEL 897
Query: 636 SNSPVPPEL 644
S PVP +L
Sbjct: 898 SEQPVPDDL 906
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
Identities = 176/431 (40%), Positives = 259/431 (60%)
Query: 221 KLEEMTERDWRIFREDFN-ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQM 279
+L +MT+ + ++R + I+ KG P+P++ W + ++ ++L A+++ GY+ P+PIQ
Sbjct: 340 ELAKMTQEEVNVYRLEMEGITVKGKGCPKPIKTWVQCGISMKILTALKKHGYEKPTPIQS 399
Query: 280 AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339
AIP + RD+IGIA+TGSGKT AF+LPM +I + E EGP AV+M PTREL
Sbjct: 400 QAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRALEE---GEGPIAVIMTPTREL 456
Query: 340 AQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLER---RY 396
A QI +E KF+ LG++VV + GG I EQ +++G E+++ TPGR+ID L R
Sbjct: 457 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRV 516
Query: 397 AVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFS 456
L + YVVLDEADRM DMGFEPQV+ ++D N++P+ R T MFS
Sbjct: 517 TNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPD------------RQTVMFS 559
Query: 457 ATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDK- 515
AT P A+E LAR+ L P+ V +G + QHV++++E KF +L LL +K
Sbjct: 560 ATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEENKFLKLLELLGHYQEKG 619
Query: 516 TAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAG 575
+ I+FV+ +++AD + K+L + Y +LHGG Q R+ + F+ +LVAT VA
Sbjct: 620 SVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAA 679
Query: 576 RGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQ 635
RG+D+ + V+NY P + E Y HR GRTGRAG G A TF+T D+ + L
Sbjct: 680 RGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARYAGDIIKALEL 739
Query: 636 SNSPVPPELAK 646
S +P+P +L K
Sbjct: 740 SGNPIPADLEK 750
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
Identities = 176/431 (40%), Positives = 261/431 (60%)
Query: 221 KLEEMTERDWRIFREDFN-ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQM 279
+L +M++ + +FR + I+ KG P+P+++W + ++ ++L ++++ GY+ P+PIQ
Sbjct: 341 ELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQT 400
Query: 280 AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339
AIP + RD+IGIA+TGSGKT AF+LPM +I + S E E EGP AV+M PTREL
Sbjct: 401 QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI--MDQRSLE-EGEGPIAVIMTPTREL 457
Query: 340 AQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLER---RY 396
A QI +E KF+ LG++VV + GG I EQ +++G E+++ TPGR+ID L R
Sbjct: 458 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRV 517
Query: 397 AVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFS 456
L + YVVLDEADRM DMGFEPQV+ ++D N++P+ R T MFS
Sbjct: 518 TNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPD------------RQTVMFS 560
Query: 457 ATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDK- 515
AT P A+E LAR+ L P+ V +G + Q V++++E +KF +L LL +
Sbjct: 561 ATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESG 620
Query: 516 TAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAG 575
+ I+FV+ +++AD + K+L + Y +LHGG Q R+ + F+ +LVAT VA
Sbjct: 621 SVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAA 680
Query: 576 RGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQ 635
RG+D+ + V+NY P + E Y HR GRTGRAG G A TF+T D+ + L
Sbjct: 681 RGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALEL 740
Query: 636 SNSPVPPELAK 646
S + VPP+L K
Sbjct: 741 SGTAVPPDLEK 751
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
Identities = 176/431 (40%), Positives = 261/431 (60%)
Query: 221 KLEEMTERDWRIFREDFN-ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQM 279
+L +M++ + +FR + I+ KG P+P+++W + ++ ++L ++++ GY+ P+PIQ
Sbjct: 341 ELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQT 400
Query: 280 AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339
AIP + RD+IGIA+TGSGKT AF+LPM +I + S E E EGP AV+M PTREL
Sbjct: 401 QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI--MDQRSLE-EGEGPIAVIMTPTREL 457
Query: 340 AQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLER---RY 396
A QI +E KF+ LG++VV + GG I EQ +++G E+++ TPGR+ID L R
Sbjct: 458 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRV 517
Query: 397 AVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFS 456
L + YVVLDEADRM DMGFEPQV+ ++D N++P+ R T MFS
Sbjct: 518 TNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPD------------RQTVMFS 560
Query: 457 ATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDK- 515
AT P A+E LAR+ L P+ V +G + Q V++++E +KF +L LL +
Sbjct: 561 ATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESG 620
Query: 516 TAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAG 575
+ I+FV+ +++AD + K+L + Y +LHGG Q R+ + F+ +LVAT VA
Sbjct: 621 SVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAA 680
Query: 576 RGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQ 635
RG+D+ + V+NY P + E Y HR GRTGRAG G A TF+T D+ + L
Sbjct: 681 RGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALEL 740
Query: 636 SNSPVPPELAK 646
S + VPP+L K
Sbjct: 741 SGTAVPPDLEK 751
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
Identities = 176/431 (40%), Positives = 261/431 (60%)
Query: 221 KLEEMTERDWRIFREDFN-ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQM 279
+L +M++ + +FR + I+ KG P+P+++W + ++ ++L ++++ GY+ P+PIQ
Sbjct: 341 ELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQT 400
Query: 280 AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339
AIP + RD+IGIA+TGSGKT AF+LPM +I + S E E EGP AV+M PTREL
Sbjct: 401 QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI--MDQRSLE-EGEGPIAVIMTPTREL 457
Query: 340 AQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLER---RY 396
A QI +E KF+ LG++VV + GG I EQ +++G E+++ TPGR+ID L R
Sbjct: 458 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRV 517
Query: 397 AVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFS 456
L + YVVLDEADRM DMGFEPQV+ ++D N++P+ R T MFS
Sbjct: 518 TNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPD------------RQTVMFS 560
Query: 457 ATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDK- 515
AT P A+E LAR+ L P+ V +G + Q V++++E +KF +L LL +
Sbjct: 561 ATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESG 620
Query: 516 TAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAG 575
+ I+FV+ +++AD + K+L + Y +LHGG Q R+ + F+ +LVAT VA
Sbjct: 621 SVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAA 680
Query: 576 RGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQ 635
RG+D+ + V+NY P + E Y HR GRTGRAG G A TF+T D+ + L
Sbjct: 681 RGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALEL 740
Query: 636 SNSPVPPELAK 646
S + VPP+L K
Sbjct: 741 SGTAVPPDLEK 751
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
Identities = 176/431 (40%), Positives = 261/431 (60%)
Query: 221 KLEEMTERDWRIFREDFN-ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQM 279
+L +M++ + +FR + I+ KG P+P+++W + ++ ++L ++++ GY+ P+PIQ
Sbjct: 341 ELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQT 400
Query: 280 AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339
AIP + RD+IGIA+TGSGKT AF+LPM +I + S E E EGP AV+M PTREL
Sbjct: 401 QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI--MDQRSLE-EGEGPIAVIMTPTREL 457
Query: 340 AQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLER---RY 396
A QI +E KF+ LG++VV + GG I EQ +++G E+++ TPGR+ID L R
Sbjct: 458 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRV 517
Query: 397 AVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFS 456
L + YVVLDEADRM DMGFEPQV+ ++D N++P+ R T MFS
Sbjct: 518 TNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPD------------RQTVMFS 560
Query: 457 ATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDK- 515
AT P A+E LAR+ L P+ V +G + Q V++++E +KF +L LL +
Sbjct: 561 ATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESG 620
Query: 516 TAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAG 575
+ I+FV+ +++AD + K+L + Y +LHGG Q R+ + F+ +LVAT VA
Sbjct: 621 SVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAA 680
Query: 576 RGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQ 635
RG+D+ + V+NY P + E Y HR GRTGRAG G A TF+T D+ + L
Sbjct: 681 RGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALEL 740
Query: 636 SNSPVPPELAK 646
S + VPP+L K
Sbjct: 741 SGTAVPPDLEK 751
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
Identities = 177/451 (39%), Positives = 262/451 (58%)
Query: 210 DMRVDRHWSEKKLEEMTERDWRIFREDFN-ISYKGSKIPRPMRNWAEGKLTPELLRAVER 268
D + D + ++L+ ++ + R + I +G P+P+ +W++ L+ + + +
Sbjct: 376 DFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVINS 435
Query: 269 VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGP 328
+GY+ P+ IQ AIP RDVIG+A+TGSGKT AF+LPM +I P+ EGP
Sbjct: 436 LGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKT---GEGP 492
Query: 329 YAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRL 388
A++M PTRELA QI E F L I+ GG I++Q +++G E+V+ TPGR+
Sbjct: 493 IAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRM 552
Query: 389 IDCLER---RYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDE 445
ID L R L++C Y+VLDEADRM D+GFEPQV+ +++ N++P+
Sbjct: 553 IDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIIN-----NIRPD-------- 599
Query: 446 KRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRL 505
R T +FSAT P A+E LARK L+ PV +T+G + Q V + E KFSRL
Sbjct: 600 ----RQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRL 655
Query: 506 QRLLDELG----DKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFR 561
LL EL D +VFV+ +++AD + +L K GY ++HGGK Q R+ ++ ++
Sbjct: 656 LELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYK 715
Query: 562 TKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFH 621
++VL+AT V RG+D+ + V+NYD P ++E Y HR+GRTGRAG TGVA TF+T
Sbjct: 716 AGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPE 775
Query: 622 DTDVFYDLKQMLIQSNSPVPPELAKHEASKF 652
D+ + L S PVP EL + AS+F
Sbjct: 776 QEKYAVDIAKALKMSKQPVPKEL-QTLASQF 805
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
Identities = 176/431 (40%), Positives = 261/431 (60%)
Query: 221 KLEEMTERDWRIFREDFN-ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQM 279
+L +M++ + +FR + I+ KG P+P+++W + ++ ++L ++++ GY+ P+PIQ
Sbjct: 341 ELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQT 400
Query: 280 AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339
AIP + RD+IGIA+TGSGKT AF+LPM +I + S E E EGP AV+M PTREL
Sbjct: 401 QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI--MDQRSLE-EGEGPIAVIMTPTREL 457
Query: 340 AQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLER---RY 396
A QI +E KF+ LG++VV + GG I EQ +++G E+++ TPGR+ID L R
Sbjct: 458 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRV 517
Query: 397 AVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFS 456
L + YVVLDEADRM DMGFEPQV+ ++D N++P+ R T MFS
Sbjct: 518 TNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPD------------RQTVMFS 560
Query: 457 ATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDK- 515
AT P A+E LAR+ L P+ V +G + Q V++++E +KF +L LL +
Sbjct: 561 ATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESG 620
Query: 516 TAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAG 575
+ I+FV+ +++AD + K+L + Y +LHGG Q R+ + F+ +LVAT VA
Sbjct: 621 SVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAA 680
Query: 576 RGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQ 635
RG+D+ + V+NY P + E Y HR GRTGRAG G A TF+T D+ + L
Sbjct: 681 RGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALEL 740
Query: 636 SNSPVPPELAK 646
S + VPP+L K
Sbjct: 741 SGTAVPPDLEK 751
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
Identities = 176/431 (40%), Positives = 261/431 (60%)
Query: 221 KLEEMTERDWRIFREDFN-ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQM 279
+L +M++ + +FR + I+ KG P+P+++W + ++ ++L ++++ GY+ P+PIQ
Sbjct: 341 ELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQT 400
Query: 280 AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339
AIP + RD+IGIA+TGSGKT AF+LPM +I + S E E EGP AV+M PTREL
Sbjct: 401 QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI--MDQRSLE-EGEGPIAVIMTPTREL 457
Query: 340 AQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLER---RY 396
A QI +E KF+ LG++VV + GG I EQ +++G E+++ TPGR+ID L R
Sbjct: 458 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRV 517
Query: 397 AVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFS 456
L + YVVLDEADRM DMGFEPQV+ ++D N++P+ R T MFS
Sbjct: 518 TNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPD------------RQTVMFS 560
Query: 457 ATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDK- 515
AT P A+E LAR+ L P+ V +G + Q V++++E +KF +L LL +
Sbjct: 561 ATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESG 620
Query: 516 TAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAG 575
+ I+FV+ +++AD + K+L + Y +LHGG Q R+ + F+ +LVAT VA
Sbjct: 621 SVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAA 680
Query: 576 RGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQ 635
RG+D+ + V+NY P + E Y HR GRTGRAG G A TF+T D+ + L
Sbjct: 681 RGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALEL 740
Query: 636 SNSPVPPELAK 646
S + VPP+L K
Sbjct: 741 SGTAVPPDLEK 751
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
Identities = 177/426 (41%), Positives = 258/426 (60%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
ED I G +P P+ +AE L L ++R Y P+P+Q AIP+ RD++
Sbjct: 130 EDIPIETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMAC 189
Query: 295 AETGSGKTAAFVLPMLTYISRLPPISEENEAEG--PYAVVMAPTRELAQQIEEETVKFAH 352
A+TGSGKTAAF P+++ I + I G P AV+++PTRELA QI +E KF++
Sbjct: 190 AQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSY 249
Query: 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR 412
G+KVV GG + +Q + +G ++++ATPGRL D LER L ++ LDEADR
Sbjct: 250 QTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADR 309
Query: 413 MIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR 472
M+DMGFEPQ+ ++ M ++ P R T +FSAT P ++RLA +L
Sbjct: 310 MLDMGFEPQIRKIVQQM---DMPPPG----------VRQTMLFSATFPREIQRLASDFLS 356
Query: 473 NPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLD---ELGD--KTAI--VFVNTKK 525
N + + +G G +T+LI Q V + +S+K S L LL E G+ K A+ VFV TKK
Sbjct: 357 NYIFLAVGRVGSSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKK 416
Query: 526 NADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAH 585
AD + L G+ TT+HG +SQ++RE++L F+T R +LVATDVA RG+DIP VAH
Sbjct: 417 GADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAH 476
Query: 586 VINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELA 645
V+N+D+P +I+ Y HRIGRTGRAG +G+AT F ++T + L +++ ++N VP L
Sbjct: 477 VVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQEANQEVPDWLT 536
Query: 646 KHEASK 651
++ AS+
Sbjct: 537 RY-ASR 541
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
Identities = 176/431 (40%), Positives = 260/431 (60%)
Query: 221 KLEEMTERDWRIFREDFN-ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQM 279
+L +M+ + +FR + I+ KG P+P+++W + ++ ++L ++++ GY+ P+PIQ
Sbjct: 341 ELAKMSLEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQT 400
Query: 280 AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339
AIP + RD+IGIA+TGSGKT AF+LPM +I + S E E EGP AV+M PTREL
Sbjct: 401 QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI--MDQRSLE-EGEGPIAVIMTPTREL 457
Query: 340 AQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLER---RY 396
A QI +E KF+ LG++VV + GG I EQ +++G E+++ TPGR+ID L R
Sbjct: 458 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRV 517
Query: 397 AVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFS 456
L + YVVLDEADRM DMGFEPQV+ ++D N++P+ R T MFS
Sbjct: 518 TNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPD------------RQTVMFS 560
Query: 457 ATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDK- 515
AT P A+E LAR+ L P+ V +G + Q V++++E +KF +L LL +
Sbjct: 561 ATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESG 620
Query: 516 TAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAG 575
+ I+FV+ +++AD + K+L + Y +LHGG Q R+ + F+ +LVAT VA
Sbjct: 621 SVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAA 680
Query: 576 RGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQ 635
RG+D+ + V+NY P + E Y HR GRTGRAG G A TF+T D+ + L
Sbjct: 681 RGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALEL 740
Query: 636 SNSPVPPELAK 646
S + VPP+L K
Sbjct: 741 SGTAVPPDLEK 751
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
Identities = 175/431 (40%), Positives = 262/431 (60%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
ED I G +P P+ +AE L L + R Y P+P+Q AIP+ L+ RD++
Sbjct: 143 EDIPIETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMAC 202
Query: 295 AETGSGKTAAFVLPMLTYISRLPPISEENEAEG--PYAVVMAPTRELAQQIEEETVKFAH 352
A+TGSGKTAAF P+++ I + + + P AV+++PTRELA QI +E KF++
Sbjct: 203 AQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSY 262
Query: 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR 412
G+KVV GG I +Q + +G ++++ATPGRL D LER + ++ LDEADR
Sbjct: 263 QTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADR 322
Query: 413 MIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR 472
M+DMGFEPQ+ +++ M ++ P R R T +FSAT P ++RLA +L
Sbjct: 323 MLDMGFEPQIRKIVEQM---DMPP----------RGVRQTLLFSATFPREIQRLAADFLA 369
Query: 473 NPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLD---ELG--DKTAI--VFVNTKK 525
N + + +G G +T+LI Q V + +S+K S L LL E G K A+ VFV TK+
Sbjct: 370 NYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKR 429
Query: 526 NADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAH 585
AD + L G+ T++HG ++Q++RE++L+ F++ R +LVATDVA RG+DIP VAH
Sbjct: 430 GADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAH 489
Query: 586 VINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELA 645
V+N+D+P +I+ Y HRIGRTGRAGK+G+AT F +T + L +++ ++N VP L
Sbjct: 490 VVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELMQEANQEVPEWLT 549
Query: 646 KHEA-SKFKPG 655
++ + S F G
Sbjct: 550 RYASRSSFGGG 560
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 795 (284.9 bits), Expect = 1.8e-78, P = 1.8e-78
Identities = 174/431 (40%), Positives = 260/431 (60%)
Query: 221 KLEEMTERDWRIFREDFN-ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQM 279
+L MT D +R D I KG P+P++ WA+ ++ + + + R+G++ P+PIQ
Sbjct: 479 ELTRMTAADVEKYRSDLEGIQVKGKGCPKPIKTWAQCGVSKKEMEVLRRLGFEKPTPIQC 538
Query: 280 AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339
AIP + RD+IGIA+TGSGKT AF+LPM +I P + + +G A++MAPTREL
Sbjct: 539 QAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQPSMED---GDGAIAIIMAPTREL 595
Query: 340 AQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLER---RY 396
QI ++ KF+ LG++ V + GG I EQ +++G E+++ TPGR+ID L R
Sbjct: 596 CMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRV 655
Query: 397 AVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFS 456
L + YVVLDEADRM DMGFEPQV+ ++D N++P+ R T MFS
Sbjct: 656 TNLRRVTYVVLDEADRMFDMGFEPQVMRIID-----NVRPD------------RQTVMFS 698
Query: 457 ATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLL---DELG 513
AT P +E LAR+ L+ P+ V +G + + QHVV++ + KF +L LL E G
Sbjct: 699 ATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAG 758
Query: 514 DKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV 573
+ IVFV+ ++NAD++ ++L K Y +LHGG Q R+ ++ F++ + +L+AT V
Sbjct: 759 --SIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSV 816
Query: 574 AGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQML 633
A RG+D+ D+ V+NYD+P + E Y HR GRTGRAGK G A TF+T + D+ + +
Sbjct: 817 AARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAM 876
Query: 634 IQSNSPVPPEL 644
S + +P EL
Sbjct: 877 DLSGTLIPAEL 887
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
Identities = 176/429 (41%), Positives = 254/429 (59%)
Query: 221 KLEEMTERDWRIFREDFN-ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQM 279
+L M+ + +R + IS KG P+P++ W + ++ ++L A+++ Y+ P+PIQ
Sbjct: 326 ELARMSPEEVSEYRLELEGISVKGKGCPKPIKTWVQCGISMKVLNALKKHNYEKPTPIQA 385
Query: 280 AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339
AIP + RD+IGIA+TGSGKT AF+LPM +I P+ E AEGP AV+M PTREL
Sbjct: 386 QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPVGE---AEGPLAVIMTPTREL 442
Query: 340 AQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCL---ERRY 396
A QI +E KF+ L ++VV + GG I EQ +++G E+++ TPGR+ID L R
Sbjct: 443 ALQITKECKKFSKSLALRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANNGRV 502
Query: 397 AVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFS 456
L + YVV+DEADRM DMGFEPQV+ ++D N++P+ R T MFS
Sbjct: 503 TNLRRVTYVVIDEADRMFDMGFEPQVMRIVD-----NVRPD------------RQTVMFS 545
Query: 457 ATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDK- 515
AT P +E LAR+ L PV V +G + QHV++++E +KF +L +L +K
Sbjct: 546 ATFPRTMEALARRILSKPVEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLEILGHYQEKG 605
Query: 516 TAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAG 575
+ I+FV+ +++AD + K+L K Y +LHGG Q R+ + F+ +LVAT VA
Sbjct: 606 SVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAA 665
Query: 576 RGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQ 635
RG+D+ + V+NY P + E Y HR GRTGRAG G A TF+T D+ + L
Sbjct: 666 RGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEGQARYSGDILKALEL 725
Query: 636 SNSPVPPEL 644
S S VP EL
Sbjct: 726 SGSSVPAEL 734
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
Identities = 167/410 (40%), Positives = 247/410 (60%)
Query: 239 ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETG 298
I+ KG ++P P + EG ++ + + G+ P+ IQ P+ + RD++G+A+TG
Sbjct: 145 ITIKGDQVPTPSIEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTG 204
Query: 299 SGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKV 358
SGKT A+VLP + +I+ P + +GP A+V+APTRELAQQI++ ++F ++
Sbjct: 205 SGKTLAYVLPAVVHINNQPRLER---GDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRN 261
Query: 359 VSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGF 418
I GG +Q + +G E+VIATPGRLID LER L +C Y+VLDEADRM+DMGF
Sbjct: 262 TCIFGGAPKGQQARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGF 321
Query: 419 EPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVT 478
EPQ+ ++ ++P+ R M+SAT P V +LA ++L N + V
Sbjct: 322 EPQIRKIMQ-----QIRPD------------RQVLMWSATWPKEVRQLAEEFLNNYIQVN 364
Query: 479 IGTAG-KATELISQHVVMMKESEKFSRLQRLLDELG--DKT-AIVFVNTKKNADMVAKNL 534
IG+ A I Q V + E+EK +L +LL ++ ++T I+FV TKK D + +N+
Sbjct: 365 IGSLSLSANHNILQIVDVCDENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNI 424
Query: 535 DKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGN 594
+ G+R +HG KSQ++R+ L FR R+++LVATDVA RG+D+ DV VINYD P N
Sbjct: 425 SRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSN 484
Query: 595 IEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPEL 644
E Y HRIGRTGR+ TG A T T + + DL Q+L ++N + P+L
Sbjct: 485 SEDYVHRIGRTGRSNNTGTAYTLFTHSNANKANDLIQVLREANQTINPKL 534
>UNIPROTKB|A4RN46 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
"mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
KEGG:mgr:MGG_15532 Uniprot:A4RN46
Length = 1012
Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
Identities = 176/456 (38%), Positives = 261/456 (57%)
Query: 217 WSEK-KLEEMTERDWRIFREDFN-ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNP 274
W E +L EMTE + R + + I G +P+P++ W+ LT +L + ++ Y P
Sbjct: 342 WVEPYELSEMTEAEVAELRLELDGIKVSGKDVPKPVQKWSLCGLTRPILDVIAKLEYDKP 401
Query: 275 SPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMA 334
+ IQM A+P+ + RDV+G+A+TGSGKT AF+LPM +I P+ + EGP +++
Sbjct: 402 TAIQMQALPVIMSGRDVVGVAKTGSGKTMAFLLPMFRHIKDQEPVKDN---EGPIGLILT 458
Query: 335 PTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCL-- 392
PTRELA QI + F LG++ V GG I++Q +++G E+V+AT GR+ID L
Sbjct: 459 PTRELAVQIFRDCKPFLKTLGLRAVCAYGGPPIKDQIADLKRGAEIVVATTGRMIDLLAA 518
Query: 393 -ERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRT 451
+ R L + Y+VLDEADRM DMGFEPQV+ + +N++P+ R
Sbjct: 519 NQGRVVSLRRTTYIVLDEADRMFDMGFEPQVMKIF-----ANVRPD------------RQ 561
Query: 452 TYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDE 511
T +FSATMP ++ L +K L+NPV + +G I+Q V + E KF+RL LL E
Sbjct: 562 TVLFSATMPKIMDALVKKVLKNPVEIEVGGKSVVASEITQIVEIRDEKSKFNRLLELLGE 621
Query: 512 L----GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNV 567
L D +++FV ++ AD + + L + GY +LHGGK Q R+ ++ F++ V
Sbjct: 622 LYKDDDDVRSLIFVERQEKADELLRELLRKGYGCMSLHGGKDQVDRDSTISDFKSGVCPV 681
Query: 568 LVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFY 627
++AT VA RG+D+ + V+NYD P ++E Y HR GRTGRAG TG A TF+T +
Sbjct: 682 MIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFVTEEQENCAI 741
Query: 628 DLKQMLIQSNSPVPP---ELAKHEASKFKPGTIPDR 660
+ + L QS PVP E+ K K K G D+
Sbjct: 742 GIAKALEQSGQPVPEKLIEMRKAFREKVKAGKAKDQ 777
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 169/436 (38%), Positives = 257/436 (58%)
Query: 217 WSEKKLEEMTERDWRIFR-EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPS 275
+SE L T+ + E+ + G +P + ++ E P ++ V R GY P+
Sbjct: 104 YSESNLFHRTDSGINFDKYENIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPT 163
Query: 276 PIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYIS-------RLPPISEENEAEGP 328
P+Q +IP L RD++ A+TGSGKTAAF+LP++ +I + P + P
Sbjct: 164 PVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYP 223
Query: 329 YAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGG-QSIEEQGFRIRQGCEVVIATPGR 387
A+V++PTRELA QI +E KF++ I+ + GG ++ +Q R+R G ++IATPGR
Sbjct: 224 CALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGR 283
Query: 388 LIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKR 447
LID +E+ + L C Y+VLDEADRM+DMGFEPQ+ ++ + P+
Sbjct: 284 LIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIV----GQGMPPKTA-------- 331
Query: 448 IYRTTYMFSATMPPAVERLARKYLR-NPVVVTIGTAGKATELISQHVVMMKESEKFSRLQ 506
RTT MFSAT P ++ LA+ +L+ N + + +G G +E I Q ++ + E EK S L
Sbjct: 332 --RTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVNEMEKRSNLM 389
Query: 507 RLL-DELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRY 565
+L +E + +VFV TK+ A+ +A L++ R ++HG Q +RE +LE FR+ +
Sbjct: 390 EILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQC 449
Query: 566 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDV 625
+LVAT VA RG+DIP+V HVINYD+PG+ + Y HRIGRTGR G G+AT+F + +
Sbjct: 450 PILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSFFNDKNRGI 509
Query: 626 FYDLKQMLIQSNSPVP 641
DLK ++++SN VP
Sbjct: 510 GRDLKNLIVESNQEVP 525
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 173/431 (40%), Positives = 253/431 (58%)
Query: 226 TERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLG 285
++RD FR++ ++ KG IP P+ + E +L+ V+ G+ P+PIQ P+
Sbjct: 102 SDRDIEQFRKENEMTVKGHDIPHPITTFDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMA 161
Query: 286 LQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEE 345
L RD+IGIA TGSGKT ++ LP + +I+ P + +GP +V+APTRELA QI+
Sbjct: 162 LSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQLQY---GDGPIVLVLAPTRELAVQIQT 218
Query: 346 ETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYV 405
E KF I+ + GG Q + +G E+ IATPGRLID LE L + Y+
Sbjct: 219 ECSKFGKSSRIRNTCVYGGAPKGPQIRDLARGVEICIATPGRLIDMLEAGKTNLKRVTYL 278
Query: 406 VLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVER 465
VLDEADRM+DMGFEPQ+ ++D ++P+ R T M+SAT P V++
Sbjct: 279 VLDEADRMLDMGFEPQIRKIVD-----QIRPD------------RQTLMWSATWPKEVQQ 321
Query: 466 LARKYLRNPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDE-LGDKT--AIVFV 521
L R YL +P+ VTIG+ A+ I+Q V ++ E K RL + L+ L +K +VF
Sbjct: 322 LTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVKHLESALNEKDNKILVFA 381
Query: 522 NTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIP 581
+TK+ D + L G+ +HG K Q +R+ L+ FR + +++VATDVA RGID+
Sbjct: 382 STKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDVK 441
Query: 582 DVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP 641
+ HVINYDMPGNIE Y HRIGRTGR G +G A +F T ++ + DL +++ ++N VP
Sbjct: 442 GITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGGDLCKIMREANQTVP 501
Query: 642 PELAKHEASKF 652
PEL + + +
Sbjct: 502 PELQRFDRRSY 512
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
Identities = 168/418 (40%), Positives = 253/418 (60%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + G+ P + ++++ ++ ++ +E Y P+P+Q AIP+ ++RD++
Sbjct: 164 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 223
Query: 295 AETGSGKTAAFVLPMLTYISRLPP-----ISEENEAEG-----PYAVVMAPTRELAQQIE 344
A+TGSGKTAAF+LP+L+ I P +EN G P ++V+APTRELA QI
Sbjct: 224 AQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 283
Query: 345 EETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNY 404
EE KF++ ++ + GG I +Q + +GC +++ATPGRL+D +ER L+ C Y
Sbjct: 284 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 343
Query: 405 VVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVE 464
+VLDEADRM+DMGFEPQ+ ++ E + + K + R T MFSAT P ++
Sbjct: 344 LVLDEADRMLDMGFEPQIRRIV------------EQDTMPPKGV-RHTMMFSATFPKEIQ 390
Query: 465 RLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELG-DKTAIVFVNT 523
LAR +L + + +G G +E I+Q VV ++ES+K S L LL+ G D +VFV T
Sbjct: 391 MLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVET 450
Query: 524 KKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV 583
KK AD + L GY T++HG +SQ RE +L FR+ + +LVAT VA RG+DI +V
Sbjct: 451 KKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 510
Query: 584 AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP 641
HVIN+D+P +IE Y HRIGRTGR G G+AT+F + ++ DL +L+++ VP
Sbjct: 511 KHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNANITKDLLDLLVEAKQEVP 568
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 168/418 (40%), Positives = 253/418 (60%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + G+ P + ++++ ++ ++ +E Y P+P+Q AIP+ ++RD++
Sbjct: 163 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 222
Query: 295 AETGSGKTAAFVLPMLTYISRLPP-----ISEENEAEG-----PYAVVMAPTRELAQQIE 344
A+TGSGKTAAF+LP+L+ I P +EN G P ++V+APTRELA QI
Sbjct: 223 AQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 282
Query: 345 EETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNY 404
EE KF++ ++ + GG I +Q + +GC +++ATPGRL+D +ER L+ C Y
Sbjct: 283 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 342
Query: 405 VVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVE 464
+VLDEADRM+DMGFEPQ+ ++ E + + K + R T MFSAT P ++
Sbjct: 343 LVLDEADRMLDMGFEPQIRRIV------------EQDTMPPKGV-RHTMMFSATFPKEIQ 389
Query: 465 RLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELG-DKTAIVFVNT 523
LAR +L + + +G G +E I+Q VV ++ES+K S L LL+ G D +VFV T
Sbjct: 390 MLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVET 449
Query: 524 KKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV 583
KK AD + L GY T++HG +SQ RE +L FR+ + +LVAT VA RG+DI +V
Sbjct: 450 KKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 509
Query: 584 AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP 641
HVIN+D+P +IE Y HRIGRTGR G G+AT+F + ++ DL +L+++ VP
Sbjct: 510 KHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVP 567
>UNIPROTKB|J9P0V9 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
KEGG:cfa:480886 Uniprot:J9P0V9
Length = 662
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 168/418 (40%), Positives = 253/418 (60%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + G+ P + ++++ ++ ++ +E Y P+P+Q AIP+ ++RD++
Sbjct: 164 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 223
Query: 295 AETGSGKTAAFVLPMLTYISRLPP-----ISEENEAEG-----PYAVVMAPTRELAQQIE 344
A+TGSGKTAAF+LP+L+ I P +EN G P ++V+APTRELA QI
Sbjct: 224 AQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 283
Query: 345 EETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNY 404
EE KF++ ++ + GG I +Q + +GC +++ATPGRL+D +ER L+ C Y
Sbjct: 284 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 343
Query: 405 VVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVE 464
+VLDEADRM+DMGFEPQ+ ++ E + + K + R T MFSAT P ++
Sbjct: 344 LVLDEADRMLDMGFEPQIRRIV------------EQDTMPPKGV-RHTMMFSATFPKEIQ 390
Query: 465 RLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELG-DKTAIVFVNT 523
LAR +L + + +G G +E I+Q VV ++ES+K S L LL+ G D +VFV T
Sbjct: 391 MLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVET 450
Query: 524 KKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV 583
KK AD + L GY T++HG +SQ RE +L FR+ + +LVAT VA RG+DI +V
Sbjct: 451 KKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 510
Query: 584 AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP 641
HVIN+D+P +IE Y HRIGRTGR G G+AT+F + ++ DL +L+++ VP
Sbjct: 511 KHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVP 568
>UNIPROTKB|O00571 [details] [associations]
symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
stress" evidence=IDA] [GO:0071243 "cellular response to
arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0042256 "mature
ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0009615 "response to virus" evidence=IDA] [GO:0007243
"intracellular protein kinase cascade" evidence=IDA] [GO:0032728
"positive regulation of interferon-beta production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
"positive regulation of chemokine (C-C motif) ligand 5 production"
evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030308 "negative
regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043154 "negative regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
GO:GO:0032728 Uniprot:O00571
Length = 662
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 168/418 (40%), Positives = 253/418 (60%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + G+ P + ++++ ++ ++ +E Y P+P+Q AIP+ ++RD++
Sbjct: 164 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 223
Query: 295 AETGSGKTAAFVLPMLTYISRLPP-----ISEENEAEG-----PYAVVMAPTRELAQQIE 344
A+TGSGKTAAF+LP+L+ I P +EN G P ++V+APTRELA QI
Sbjct: 224 AQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 283
Query: 345 EETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNY 404
EE KF++ ++ + GG I +Q + +GC +++ATPGRL+D +ER L+ C Y
Sbjct: 284 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 343
Query: 405 VVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVE 464
+VLDEADRM+DMGFEPQ+ ++ E + + K + R T MFSAT P ++
Sbjct: 344 LVLDEADRMLDMGFEPQIRRIV------------EQDTMPPKGV-RHTMMFSATFPKEIQ 390
Query: 465 RLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELG-DKTAIVFVNT 523
LAR +L + + +G G +E I+Q VV ++ES+K S L LL+ G D +VFV T
Sbjct: 391 MLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVET 450
Query: 524 KKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV 583
KK AD + L GY T++HG +SQ RE +L FR+ + +LVAT VA RG+DI +V
Sbjct: 451 KKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 510
Query: 584 AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP 641
HVIN+D+P +IE Y HRIGRTGR G G+AT+F + ++ DL +L+++ VP
Sbjct: 511 KHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVP 568
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 165/430 (38%), Positives = 249/430 (57%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + G +P P+ + L LL ++ + P+P+Q ++P+ RD++
Sbjct: 126 DDIPVDASGKDVPEPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMAC 185
Query: 295 AETGSGKTAAFVLPMLTYISRLPPISEENEAEG--------PYAVVMAPTRELAQQIEEE 346
A+TGSGKT F+ P+L+ + P S + E++G P AV+MAPTRELA QI +E
Sbjct: 186 AQTGSGKTGGFLFPVLSESFKTGP-SPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDE 244
Query: 347 TVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVV 406
KF + +K + GG I Q I +GC++++ATPGRL D LER L Y+V
Sbjct: 245 AKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLV 304
Query: 407 LDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERL 466
LDEADRM+DMGFEPQ+ +++ ++ P E R T MFSAT P ++ L
Sbjct: 305 LDEADRMLDMGFEPQIRHIVE---DCDMTPVGE----------RQTLMFSATFPADIQHL 351
Query: 467 ARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKN 526
AR +L + + +++G G +E I+Q V+ ++ +K S L LL D ++FV TK+
Sbjct: 352 ARDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSALLDLLSASTDGLTLIFVETKRM 411
Query: 527 ADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHV 586
AD + L +R T +HG ++Q +RE +L FR+ +LVAT VA RG+DIP+V HV
Sbjct: 412 ADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHV 471
Query: 587 INYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAK 646
INYD+P +++ Y HRIGRTGRAG TG+AT F ++++ L ++L ++N VP L
Sbjct: 472 INYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHEILTEANQEVPSFLK- 530
Query: 647 HEASKFKPGT 656
+A PG+
Sbjct: 531 -DAMMSAPGS 539
>UNIPROTKB|F1NIX1 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
Uniprot:F1NIX1
Length = 638
Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 169/418 (40%), Positives = 251/418 (60%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + GS P + ++++ + ++ +E Y P+P+Q AIP+ ++RD++
Sbjct: 142 DDIPVEATGSNCPPHIESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 201
Query: 295 AETGSGKTAAFVLPMLTYISRLPP-----ISEENEAEG-----PYAVVMAPTRELAQQIE 344
A+TGSGKTAAF+LP+L+ I P +EN G P ++V+APTRELA QI
Sbjct: 202 AQTGSGKTAAFLLPILSQIYADGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 261
Query: 345 EETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNY 404
EE KFA+ ++ + GG I +Q + +GC +++ATPGRL+D +ER L+ C Y
Sbjct: 262 EEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 321
Query: 405 VVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVE 464
+VLDEADRM+DMGFEPQ+ ++ E + + K + R T MFSAT P ++
Sbjct: 322 LVLDEADRMLDMGFEPQIRRIV------------EQDTMPPKGV-RHTMMFSATFPKEIQ 368
Query: 465 RLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELG-DKTAIVFVNT 523
LAR +L + + +G G +E I+Q VV ++E +K S L LL+ G D +VFV T
Sbjct: 369 MLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVET 428
Query: 524 KKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV 583
KK AD + L GY T++HG +SQ RE +L FR+ + +LVAT VA RG+DI +V
Sbjct: 429 KKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 488
Query: 584 AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP 641
HVIN+D+P +IE Y HRIGRTGR G G+AT+F + ++ DL +L+++ VP
Sbjct: 489 KHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVP 546
>UNIPROTKB|D3IVZ2 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 EMBL:DAAA02075532
EMBL:GQ259590 IPI:IPI00955537 UniGene:Bt.89461
Ensembl:ENSBTAT00000065838 OMA:MSHEAVK Uniprot:D3IVZ2
Length = 661
Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
Identities = 166/418 (39%), Positives = 251/418 (60%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + G+ P + ++++ + ++ +E Y P+P+Q AIP+ ++RD++
Sbjct: 164 DDIPVEVTGNNCPPHIESFSDVAMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 223
Query: 295 AETGSGKTAAFVLPMLTYI------SRLPPISEENE----AEGPYAVVMAPTRELAQQIE 344
A+TGSGKTAAF+LP+L+ I L + E + P ++V+APTRELA QI
Sbjct: 224 AQTGSGKTAAFLLPILSQIYTDGPGEALKAVKESGRYGRRKQYPISLVLAPTRELAVQIY 283
Query: 345 EETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNY 404
EE KF++ + + GG I +Q + +GC +++ATPGRL+D +ER L+ C Y
Sbjct: 284 EEARKFSYRSRVLPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 343
Query: 405 VVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVE 464
+VLDEADRM+DMGFEPQ+ ++ E + + K + R T MFSAT P ++
Sbjct: 344 LVLDEADRMLDMGFEPQIRRII------------EQDTMPPKGV-RHTMMFSATFPKEIQ 390
Query: 465 RLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELG-DKTAIVFVNT 523
LAR +L + + +G G +E I+Q VV ++E++K S L LL+ G D +VFV T
Sbjct: 391 MLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFLLDLLNATGTDSLTLVFVET 450
Query: 524 KKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV 583
KK AD + L GY T++HG +SQ RE +L FR+ + +LVAT VA RG+DI +V
Sbjct: 451 KKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 510
Query: 584 AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP 641
HVIN+D+PG+IE Y HRIGRTGR G G+AT+F + ++ DL +L+++ VP
Sbjct: 511 KHVINFDLPGDIEEYVHRIGRTGRVGNLGLATSFFNERNINISKDLLDLLVEAKQEVP 568
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
Identities = 167/418 (39%), Positives = 253/418 (60%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + G+ P + ++++ ++ ++ +E Y P+P+Q AIP+ ++RD++
Sbjct: 163 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 222
Query: 295 AETGSGKTAAFVLPMLTYISRLPP-----ISEENEAEG-----PYAVVMAPTRELAQQIE 344
A+TGSGKTAAF+LP+L+ I P +EN G P ++V+APTRELA QI
Sbjct: 223 AQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIY 282
Query: 345 EETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNY 404
EE KF++ ++ + GG I +Q + +GC +++ATPGRL+D +ER L+ C Y
Sbjct: 283 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 342
Query: 405 VVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVE 464
+VLDEADRM+DMGFEPQ+ ++ E + + K + R T MFSAT P ++
Sbjct: 343 LVLDEADRMLDMGFEPQIRRIV------------EQDTMPPKGV-RHTMMFSATFPKEIQ 389
Query: 465 RLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELG-DKTAIVFVNT 523
LAR +L + + +G G +E I+Q VV ++E++K S L LL+ G D +VFV T
Sbjct: 390 MLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFLLDLLNATGKDSLILVFVET 449
Query: 524 KKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV 583
KK AD + L GY T++HG +SQ RE +L FR+ + +LVAT VA RG+DI +V
Sbjct: 450 KKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 509
Query: 584 AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP 641
HVIN+D+P +IE Y HRIGRTGR G G+AT+F + ++ DL +L+++ VP
Sbjct: 510 KHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVP 567
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
Identities = 167/418 (39%), Positives = 253/418 (60%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + G+ P + ++++ ++ ++ +E Y P+P+Q AIP+ ++RD++
Sbjct: 162 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 221
Query: 295 AETGSGKTAAFVLPMLTYISRLPP-----ISEENEAEG-----PYAVVMAPTRELAQQIE 344
A+TGSGKTAAF+LP+L+ I P +EN G P ++V+APTRELA QI
Sbjct: 222 AQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIY 281
Query: 345 EETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNY 404
EE KF++ ++ + GG I +Q + +GC +++ATPGRL+D +ER L+ C Y
Sbjct: 282 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 341
Query: 405 VVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVE 464
+VLDEADRM+DMGFEPQ+ ++ E + + K + R T MFSAT P ++
Sbjct: 342 LVLDEADRMLDMGFEPQIRRIV------------EQDTMPPKGV-RHTMMFSATFPKEIQ 388
Query: 465 RLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELG-DKTAIVFVNT 523
LAR +L + + +G G +E I+Q VV ++E++K S L LL+ G D +VFV T
Sbjct: 389 MLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFLLDLLNATGKDSLILVFVET 448
Query: 524 KKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV 583
KK AD + L GY T++HG +SQ RE +L FR+ + +LVAT VA RG+DI +V
Sbjct: 449 KKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 508
Query: 584 AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP 641
HVIN+D+P +IE Y HRIGRTGR G G+AT+F + ++ DL +L+++ VP
Sbjct: 509 KHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVP 566
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 163/444 (36%), Positives = 266/444 (59%)
Query: 218 SEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEG-KLTPELLRAVERVGYKNPSP 276
S+++++ + ++ I +D K IP P + + + PE++ +++ G++ P+P
Sbjct: 208 SQEQVQNWRKENYNIMCDDLKDGEK-RPIPNPACKFEDAFQCYPEVMINIKKAGFQKPTP 266
Query: 277 IQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPI-SEENEAEGPYAVVMAP 335
IQ A P+ LQ D+IG+A+TG+GKT ++++P ++ P + S + GP +V+ P
Sbjct: 267 IQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHVDSQPVVFSLQRARNGPGMLVLTP 326
Query: 336 TRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERR 395
TRELA Q+E E K++ Y G+K V + GG + Q + +G +++IATPGRL D
Sbjct: 327 TRELALQVEAECSKYS-YKGLKSVCVYGGGDRDGQIKDLLKGVDIIIATPGRLNDLQMNN 385
Query: 396 YAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMF 455
+ L +Y+VLDEAD+M+DMGFEPQ++ +L +++P+ R T M
Sbjct: 386 FVYLKSISYLVLDEADKMLDMGFEPQIMKIL-----LDIRPD------------RQTVMT 428
Query: 456 SATMPPAVERLARKYLRNPVVVTIGTAGK-ATELISQHVVMMKESEKFSRLQRLLDELGD 514
SAT P AV RLA+ YL+ P++V +GT A + Q++++ E EK S +Q ++ +
Sbjct: 429 SATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTEDEKRSHIQTFIESMSP 488
Query: 515 KT-AIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV 573
K I+FV+ K AD ++ +L V +LHG + Q RE +L+ F+T + +L+ATD+
Sbjct: 489 KDKVIIFVSRKAVADHLSSDLGIRHISVESLHGNREQGDRERALKNFKTGKVRILIATDL 548
Query: 574 AGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQML 633
A RG+D+ DV HV NYD P NIE Y HR+GRTGRAG+TGV+ T +T D + +L +L
Sbjct: 549 ASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRSDWKIAGELIHIL 608
Query: 634 IQSNSPVPPELA----KHEASKFK 653
++N +P +L +++A+K K
Sbjct: 609 ERANQSIPEDLVEMAERYKANKLK 632
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 171/446 (38%), Positives = 251/446 (56%)
Query: 208 TFDMRVDRHWSEKK--LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRA 265
T+D + W+ + L ER R+ R+ ++I +G IP P++++ E KL +LR
Sbjct: 137 TYDDPIKTSWTPPRYVLSMSEERHERV-RKKYHILVEGDGIPPPIKSFKEMKLPAAILRG 195
Query: 266 VERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEA 325
+++ G +P+PIQ+ IP L RD+IGIA TGSGKT F LP++ + ++
Sbjct: 196 LKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 255
Query: 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLG------IKVVSIVGGQSIEEQGFRIRQGCE 379
EGPY +++ P+RELA+Q + L ++ +GG S++EQ IR G
Sbjct: 256 EGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVH 315
Query: 380 VVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE 439
+++ATPGRL+D L+++ L+ C Y+ LDEADRMIDMGFE + + S K +
Sbjct: 316 MMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF-----SYFKGQ-- 368
Query: 440 DEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKES 499
R T +FSATMP ++ A+ L PV + +G AG A+ + Q V +KE
Sbjct: 369 ----------RQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEE 418
Query: 500 EKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEG 559
K L L + ++F K + D + + L G +HGGK QE+R ++E
Sbjct: 419 AKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477
Query: 560 FRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619
FR + +VLVATDVA +G+D P + HVINYDMP IE Y HRIGRTGR+G TG+ATTF+
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537
Query: 620 FH-DTDVFYDLKQMLIQSNSPVPPEL 644
D V DLK +L+++ VPP L
Sbjct: 538 KACDESVLMDLKALLLEAKQKVPPVL 563
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 168/427 (39%), Positives = 249/427 (58%)
Query: 233 FREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVI 292
FR++ ++ G IP+P+ + E +L V+ G+ P+ IQ P+ L RD++
Sbjct: 95 FRKENEMTISGHDIPKPITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMV 154
Query: 293 GIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352
GIA TGSGKT ++ LP + +I+ P ++ +GP +V+APTRELA QI+ E KF H
Sbjct: 155 GIAATGSGKTLSYCLPGIVHINAQPLLAP---GDGPIVLVLAPTRELAVQIQTECSKFGH 211
Query: 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR 412
I+ + GG +Q + +G E+VIATPGRLID LE L + Y+VLDEADR
Sbjct: 212 SSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADR 271
Query: 413 MIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR 472
M+DMGFEPQ+ ++D ++P+ R T M+SAT P V++LA YL
Sbjct: 272 MLDMGFEPQIRKIVD-----QIRPD------------RQTLMWSATWPKEVKQLAADYLN 314
Query: 473 NPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDELGDKT---AIVFVNTKKNAD 528
+P+ V +G+ A+ I+Q V ++ + EK RL + L+ ++F +TK+ D
Sbjct: 315 DPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFASTKRMCD 374
Query: 529 MVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN 588
+ K L + G+ +HG K Q +R+ L+ FR R ++VATDVA RGID+ + +VIN
Sbjct: 375 DITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVIN 434
Query: 589 YDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHE 648
YDMPGNIE Y HRIGRTGRAG TG A +F T + + L ++ ++N +PPEL K++
Sbjct: 435 YDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPELLKYD 494
Query: 649 ASKFKPG 655
+ G
Sbjct: 495 RRSYGGG 501
>UNIPROTKB|E2RRQ7 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
Length = 706
Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
Identities = 169/420 (40%), Positives = 254/420 (60%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + G+ P + ++++ ++ ++ +E Y P+P+Q AIP+ ++RD++
Sbjct: 206 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 265
Query: 295 AETGSGKTAAFVLPMLTYISRLPP-----ISEENEAEG-----PYAVVMAPTRELAQQIE 344
A+TGSGKTAAF+LP+L+ I P +EN G P ++V+APTRELA QI
Sbjct: 266 AQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 325
Query: 345 EETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNY 404
EE KF++ ++ + GG I +Q + +GC +++ATPGRL+D +ER L+ C Y
Sbjct: 326 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 385
Query: 405 VVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVE 464
+VLDEADRM+DMGFEPQ+ ++ E + + K + R T MFSAT P ++
Sbjct: 386 LVLDEADRMLDMGFEPQIRRIV------------EQDTMPPKGV-RHTMMFSATFPKEIQ 432
Query: 465 RLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLD--ELG-DKTAIVFV 521
LAR +L + + +G G +E I+Q VV ++ES+K S L LL+ E G D +VFV
Sbjct: 433 MLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATESGKDSLTLVFV 492
Query: 522 NTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIP 581
TKK AD + L GY T++HG +SQ RE +L FR+ + +LVAT VA RG+DI
Sbjct: 493 ETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDIS 552
Query: 582 DVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP 641
+V HVIN+D+P +IE Y HRIGRTGR G G+AT+F + ++ DL +L+++ VP
Sbjct: 553 NVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVP 612
>MGI|MGI:103064 [details] [associations]
symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0031333 "negative regulation of protein complex assembly"
evidence=ISO] [GO:0031369 "translation initiation factor binding"
evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
binding" evidence=ISO] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0045948
"positive regulation of translational initiation" evidence=ISO]
[GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
"cellular response to arsenic-containing substance" evidence=ISO]
[GO:0071470 "cellular response to osmotic stress" evidence=ISO]
[GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
Length = 662
Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
Identities = 167/418 (39%), Positives = 252/418 (60%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + G+ P + ++++ ++ ++ +E Y P+P+Q AIP+ ++RD++
Sbjct: 164 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 223
Query: 295 AETGSGKTAAFVLPMLTYISRLPP-----ISEENEAEG-----PYAVVMAPTRELAQQIE 344
A+TGSGKTAAF+LP+L+ I P +EN G P ++V+APTRELA QI
Sbjct: 224 AQTGSGKTAAFLLPILSQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 283
Query: 345 EETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNY 404
EE KF++ ++ + GG I +Q + +GC +++ATPGRL+D +ER L+ C Y
Sbjct: 284 EEARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 343
Query: 405 VVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVE 464
+VLDEADRM+DMGFEPQ+ ++ E + + K + R T MFSAT P ++
Sbjct: 344 LVLDEADRMLDMGFEPQIRRIV------------EQDTMPPKGV-RHTMMFSATFPKEIQ 390
Query: 465 RLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELG-DKTAIVFVNT 523
LAR +L + + +G G +E I+Q VV ++E +K S L LL+ G D +VFV T
Sbjct: 391 MLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEIDKRSFLLDLLNATGKDSLTLVFVET 450
Query: 524 KKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV 583
KK AD + L GY T++HG +SQ RE +L FR+ + +LVAT VA RG+DI +V
Sbjct: 451 KKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 510
Query: 584 AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP 641
HVIN+D+P +IE Y HRIGRTGR G G+AT+F + ++ DL +L+++ VP
Sbjct: 511 KHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVP 568
>RGD|1564771 [details] [associations]
symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
Uniprot:D4ADE8
Length = 662
Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
Identities = 167/418 (39%), Positives = 252/418 (60%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + G+ P + ++++ ++ ++ +E Y P+P+Q AIP+ ++RD++
Sbjct: 164 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 223
Query: 295 AETGSGKTAAFVLPMLTYISRLPP-----ISEENEAEG-----PYAVVMAPTRELAQQIE 344
A+TGSGKTAAF+LP+L+ I P +EN G P ++V+APTRELA QI
Sbjct: 224 AQTGSGKTAAFLLPILSQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 283
Query: 345 EETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNY 404
EE KF++ ++ + GG I +Q + +GC +++ATPGRL+D +ER L+ C Y
Sbjct: 284 EEARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 343
Query: 405 VVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVE 464
+VLDEADRM+DMGFEPQ+ ++ E + + K + R T MFSAT P ++
Sbjct: 344 LVLDEADRMLDMGFEPQIRRIV------------EQDTMPPKGV-RHTMMFSATFPKEIQ 390
Query: 465 RLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELG-DKTAIVFVNT 523
LAR +L + + +G G +E I+Q VV ++E +K S L LL+ G D +VFV T
Sbjct: 391 MLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEIDKRSFLLDLLNATGKDSLTLVFVET 450
Query: 524 KKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV 583
KK AD + L GY T++HG +SQ RE +L FR+ + +LVAT VA RG+DI +V
Sbjct: 451 KKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 510
Query: 584 AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP 641
HVIN+D+P +IE Y HRIGRTGR G G+AT+F + ++ DL +L+++ VP
Sbjct: 511 KHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVP 568
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 754 (270.5 bits), Expect = 4.2e-74, P = 4.2e-74
Identities = 171/435 (39%), Positives = 253/435 (58%)
Query: 222 LEEMTERDWRIFREDFN-ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMA 280
L +M+E + R + + I +G +P+P++ W++ L + L ++++G+ + + IQ
Sbjct: 511 LAQMSEEEAANLRLELDGIKVRGLDVPKPVQKWSQCGLGIQTLDVIDKLGFASLTSIQAQ 570
Query: 281 AIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELA 340
AIP + RDVIG+A+TGSGKT AF++PM +I P+ EN EGP ++M PTRELA
Sbjct: 571 AIPAIMSGRDVIGVAKTGSGKTMAFLIPMFRHIKDQRPL--EN-MEGPIGLIMTPTRELA 627
Query: 341 QQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLER---RYA 397
QI ++ F L ++ V GG I++Q +++G E+++ TPGR+ID L R
Sbjct: 628 TQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCTPGRMIDLLAANAGRVT 687
Query: 398 VLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSA 457
L + YVVLDEADRM DMGFEPQV+ +L SN++P+ R T +FSA
Sbjct: 688 NLRRVTYVVLDEADRMFDMGFEPQVMKIL-----SNVRPD------------RQTVLFSA 730
Query: 458 TMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLL------DE 511
T P +E LARK L P+ + +G I+Q V + E +KF RL LL DE
Sbjct: 731 TFPRNMEALARKTLTKPIEIVVGGRSVVAPEITQIVEVCNEEKKFVRLLELLGNLYSTDE 790
Query: 512 LGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT 571
D +++FV+ ++ AD + + L + GY ++HGGK Q R+ ++E F+ + VL+AT
Sbjct: 791 NEDARSLIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIAT 850
Query: 572 DVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQ 631
VA RG+D+ + V+NYD P ++E Y HR GRTGRAG TG A TFLT D+ +
Sbjct: 851 SVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDIAK 910
Query: 632 MLIQSNSPVPPELAK 646
L QS VP + K
Sbjct: 911 ALKQSGQEVPEAVQK 925
>UNIPROTKB|F1NIX2 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
Length = 636
Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
Identities = 168/419 (40%), Positives = 250/419 (59%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + GS P + ++++ + ++ +E Y P+P+Q AIP+ ++RD++
Sbjct: 140 DDIPVEATGSNCPPHIESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 199
Query: 295 AETGSGKTAAFVLPMLTYI------SRLPPISEENEAEG-----PYAVVMAPTRELAQQI 343
A+TGSGKTAAF+LP+L+ I L + N G P ++V+APTRELA QI
Sbjct: 200 AQTGSGKTAAFLLPILSQIYADGPGDALRAMKATNGRYGRRKQYPISLVLAPTRELAVQI 259
Query: 344 EEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCN 403
EE KFA+ ++ + GG I +Q + +GC +++ATPGRL+D +ER L+ C
Sbjct: 260 YEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCK 319
Query: 404 YVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAV 463
Y+VLDEADRM+DMGFEPQ+ ++ E + + K + R T MFSAT P +
Sbjct: 320 YLVLDEADRMLDMGFEPQIRRIV------------EQDTMPPKGV-RHTMMFSATFPKEI 366
Query: 464 ERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELG-DKTAIVFVN 522
+ LAR +L + + +G G +E I+Q VV ++E +K S L LL+ G D +VFV
Sbjct: 367 QMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVE 426
Query: 523 TKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPD 582
TKK AD + L GY T++HG +SQ RE +L FR+ + +LVAT VA RG+DI +
Sbjct: 427 TKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISN 486
Query: 583 VAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP 641
V HVIN+D+P +IE Y HRIGRTGR G G+AT+F + ++ DL +L+++ VP
Sbjct: 487 VKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVP 545
>UNIPROTKB|I3LDV0 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
Length = 667
Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
Identities = 169/421 (40%), Positives = 254/421 (60%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + G+ PR + ++++ ++ ++ +E Y P+P+Q AIP+ ++RD++
Sbjct: 165 DDIPVEATGNNCPRHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 224
Query: 295 AETGSGKTAAFVLPMLTYISRLPP-----ISEENEAEG-----PYAVVMAPTRELAQQIE 344
A+TGSGKTAAF+LP+L+ I P +EN G P ++V+APTRELA QI
Sbjct: 225 AQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIY 284
Query: 345 EETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNY 404
EE KF++ ++ + GG I +Q + +GC +++ATPGRL+D +ER L+ C Y
Sbjct: 285 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 344
Query: 405 VVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVE 464
+VLDEADRM+DMGFEPQ+ ++ E + + K + R T MFSAT P ++
Sbjct: 345 LVLDEADRMLDMGFEPQIRRIV------------EQDTMPPKGV-RHTMMFSATFPKEIQ 391
Query: 465 RLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELG-DKTAIVFVNT 523
LAR +L + + +G G +E I+Q VV ++ES+K S L LL+ G D +VFV T
Sbjct: 392 MLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVET 451
Query: 524 KKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV 583
KK AD + L GY T++HG +SQ RE +L FR+ + +LVAT VA RG+DI +V
Sbjct: 452 KKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 511
Query: 584 AHVINYDMPGNIEMYTHRIGRTGRAGKTGV---ATTFLTFHDTDVFYDLKQMLIQSNSPV 640
HVIN+D+P +IE Y HRIGRTGR G G+ AT+F + ++ DL +L+++ V
Sbjct: 512 KHVINFDLPSDIEEYVHRIGRTGRVGNLGLIGLATSFFNERNINITKDLLDLLVEAKQEV 571
Query: 641 P 641
P
Sbjct: 572 P 572
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
Identities = 174/441 (39%), Positives = 258/441 (58%)
Query: 220 KKLEEMTERDWRIFREDFN-ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQ 278
+++ MT+ + + +RE+ + I+ KG P+P++ WA+ + +++ +++ Y P+ IQ
Sbjct: 272 EEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQCGVNLKMMNVLKKFEYSKPTSIQ 331
Query: 279 MAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRE 338
AIP + RDVIGIA+TGSGKT AF+LPM +I P E E +GP AV++APTRE
Sbjct: 332 AQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQP---ELEEGDGPIAVILAPTRE 388
Query: 339 LAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLER---R 395
LA Q +E KFA LG+KV GG I EQ +++G E+V+ TPGR+ID L +
Sbjct: 389 LAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTPGRMIDVLAANSGK 448
Query: 396 YAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMF 455
L + Y+VLDEADRM D GFEPQ++ V++ N++P+ + T +F
Sbjct: 449 VTNLRRVTYLVLDEADRMFDKGFEPQIMKVVN-----NIRPDKQ------------TVLF 491
Query: 456 SATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDK 515
SAT P +E LARK L PV + +G I+Q+ V+ E +KF +L LL ++
Sbjct: 492 SATFPRHMEALARKVLDKPVEILVGGKSVVCSDITQNAVICAEHQKFLKLLELLGMYYEE 551
Query: 516 -TAIVFVNTKKNADMVAKNLDKLGYR-VTTLHGGKSQEQREISLEGFRTKRYNVLVATDV 573
++IVFV+ ++ AD + L + GY V LHGG Q R+ S+ F+T VLVAT V
Sbjct: 552 GSSIVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSV 611
Query: 574 AGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF-LTFHDTDVFYDLKQM 632
A RG+D+ ++ V+NYD P + E Y HR+GRTGRAG+ G A TF L H + ++ +
Sbjct: 612 AARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEICRA 671
Query: 633 LIQSNSPVPPELAKHEASKFK 653
+ P +L K +FK
Sbjct: 672 FETAGCKPPADL-KAMFERFK 691
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 170/446 (38%), Positives = 250/446 (56%)
Query: 208 TFDMRVDRHWSEKK--LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRA 265
T+D + W+ + L ER R+ R+ ++I +G IP P++++ E K +LR
Sbjct: 137 TYDDPIKTSWTPPRYVLSMSEERHERV-RKKYHILVEGDGIPPPIKSFKEMKFPAAILRG 195
Query: 266 VERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEA 325
+++ G +P+PIQ+ IP L RD+IGIA TGSGKT F LP++ + ++
Sbjct: 196 LKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 255
Query: 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLG------IKVVSIVGGQSIEEQGFRIRQGCE 379
EGPY +++ P+RELA+Q + L ++ +GG S++EQ IR G
Sbjct: 256 EGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVH 315
Query: 380 VVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE 439
+++ATPGRL+D L+++ L+ C Y+ LDEADRMIDMGFE + + S K +
Sbjct: 316 MMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF-----SYFKGQ-- 368
Query: 440 DEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKES 499
R T +FSATMP ++ A+ L PV + +G AG A+ + Q V +KE
Sbjct: 369 ----------RQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEE 418
Query: 500 EKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEG 559
K L L + ++F K + D + + L G +HGGK QE+R ++E
Sbjct: 419 AKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477
Query: 560 FRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619
FR + +VLVATDVA +G+D P + HVINYDMP IE Y HRIGRTGR+G TG+ATTF+
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537
Query: 620 FH-DTDVFYDLKQMLIQSNSPVPPEL 644
D V DLK +L+++ VPP L
Sbjct: 538 KACDESVLMDLKALLLEAKQKVPPVL 563
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 170/446 (38%), Positives = 250/446 (56%)
Query: 208 TFDMRVDRHWSEKK--LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRA 265
T+D + W+ + L ER R+ R+ ++I +G IP P++++ E K +LR
Sbjct: 137 TYDDPIKTSWTPPRYVLSMSEERHERV-RKKYHILVEGDGIPPPIKSFKEMKFPAAILRG 195
Query: 266 VERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEA 325
+++ G +P+PIQ+ IP L RD+IGIA TGSGKT F LP++ + ++
Sbjct: 196 LKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 255
Query: 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLG------IKVVSIVGGQSIEEQGFRIRQGCE 379
EGPY +++ P+RELA+Q + L ++ +GG S++EQ IR G
Sbjct: 256 EGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVH 315
Query: 380 VVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE 439
+++ATPGRL+D L+++ L+ C Y+ LDEADRMIDMGFE + + S K +
Sbjct: 316 MMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF-----SYFKGQ-- 368
Query: 440 DEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKES 499
R T +FSATMP ++ A+ L PV + +G AG A+ + Q V +KE
Sbjct: 369 ----------RQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEE 418
Query: 500 EKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEG 559
K L L + ++F K + D + + L G +HGGK QE+R ++E
Sbjct: 419 AKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477
Query: 560 FRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619
FR + +VLVATDVA +G+D P + HVINYDMP IE Y HRIGRTGR+G TG+ATTF+
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537
Query: 620 FH-DTDVFYDLKQMLIQSNSPVPPEL 644
D V DLK +L+++ VPP L
Sbjct: 538 KACDESVLMDLKALLLEAKQKVPPVL 563
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 170/446 (38%), Positives = 250/446 (56%)
Query: 208 TFDMRVDRHWSEKK--LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRA 265
T+D + W+ + L ER R+ R+ ++I +G IP P++++ E K +LR
Sbjct: 164 TYDDPIKTSWTPPRYVLSMSEERHERV-RKKYHILVEGDGIPPPIKSFKEMKFPAAILRG 222
Query: 266 VERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEA 325
+++ G +P+PIQ+ IP L RD+IGIA TGSGKT F LP++ + ++
Sbjct: 223 LKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 282
Query: 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLG------IKVVSIVGGQSIEEQGFRIRQGCE 379
EGPY +++ P+RELA+Q + L ++ +GG S++EQ IR G
Sbjct: 283 EGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVH 342
Query: 380 VVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE 439
+++ATPGRL+D L+++ L+ C Y+ LDEADRMIDMGFE + + S K +
Sbjct: 343 MMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF-----SYFKGQ-- 395
Query: 440 DEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKES 499
R T +FSATMP ++ A+ L PV + +G AG A+ + Q V +KE
Sbjct: 396 ----------RQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEE 445
Query: 500 EKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEG 559
K L L + ++F K + D + + L G +HGGK QE+R ++E
Sbjct: 446 AKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 504
Query: 560 FRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619
FR + +VLVATDVA +G+D P + HVINYDMP IE Y HRIGRTGR+G TG+ATTF+
Sbjct: 505 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 564
Query: 620 FH-DTDVFYDLKQMLIQSNSPVPPEL 644
D V DLK +L+++ VPP L
Sbjct: 565 KACDESVLMDLKALLLEAKQKVPPVL 590
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 170/446 (38%), Positives = 250/446 (56%)
Query: 208 TFDMRVDRHWSEKK--LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRA 265
T+D + W+ + L ER R+ R+ ++I +G IP P++++ E K +LR
Sbjct: 155 TYDDPIKTSWTPPRYVLSMSEERHERV-RKKYHILVEGDGIPPPIKSFKEMKFPAAILRG 213
Query: 266 VERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEA 325
+++ G +P+PIQ+ IP L RD+IGIA TGSGKT F LP++ + ++
Sbjct: 214 LKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 273
Query: 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLG------IKVVSIVGGQSIEEQGFRIRQGCE 379
EGPY +++ P+RELA+Q + L ++ +GG S++EQ IR G
Sbjct: 274 EGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVH 333
Query: 380 VVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE 439
+++ATPGRL+D L+++ L+ C Y+ LDEADRMIDMGFE + + S K +
Sbjct: 334 MMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF-----SYFKGQ-- 386
Query: 440 DEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKES 499
R T +FSATMP ++ A+ L PV + +G AG A+ + Q V +KE
Sbjct: 387 ----------RQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEE 436
Query: 500 EKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEG 559
K L L + ++F K + D + + L G +HGGK QE+R ++E
Sbjct: 437 AKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 495
Query: 560 FRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619
FR + +VLVATDVA +G+D P + HVINYDMP IE Y HRIGRTGR+G TG+ATTF+
Sbjct: 496 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 555
Query: 620 FH-DTDVFYDLKQMLIQSNSPVPPEL 644
D V DLK +L+++ VPP L
Sbjct: 556 KACDESVLMDLKALLLEAKQKVPPVL 581
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 170/446 (38%), Positives = 250/446 (56%)
Query: 208 TFDMRVDRHWSEKK--LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRA 265
T+D + W+ + L ER R+ R+ ++I +G IP P++++ E K +LR
Sbjct: 137 TYDDPIKTSWTPPRYVLSMSEERHERV-RKKYHILVEGDGIPPPIKSFKEMKFPAAILRG 195
Query: 266 VERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEA 325
+++ G +P+PIQ+ IP L RD+IGIA TGSGKT F LP++ + ++
Sbjct: 196 LKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 255
Query: 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLG------IKVVSIVGGQSIEEQGFRIRQGCE 379
EGPY +++ P+RELA+Q + L ++ +GG S++EQ IR G
Sbjct: 256 EGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVH 315
Query: 380 VVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE 439
+++ATPGRL+D L+++ L+ C Y+ LDEADRMIDMGFE + + S K +
Sbjct: 316 MMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF-----SYFKGQ-- 368
Query: 440 DEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKES 499
R T +FSATMP ++ A+ L PV + +G AG A+ + Q V +KE
Sbjct: 369 ----------RQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEE 418
Query: 500 EKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEG 559
K L L + ++F K + D + + L G +HGGK QE+R ++E
Sbjct: 419 AKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477
Query: 560 FRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619
FR + +VLVATDVA +G+D P + HVINYDMP IE Y HRIGRTGR+G TG+ATTF+
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537
Query: 620 FH-DTDVFYDLKQMLIQSNSPVPPEL 644
D V DLK +L+++ VPP L
Sbjct: 538 KACDESVLMDLKALLLEAKQKVPPVL 563
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 167/418 (39%), Positives = 252/418 (60%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + G+ P + N+++ ++ ++ +E Y P+P+Q AIP+ ++RD++
Sbjct: 163 DDIPVEATGNNCPPHIENFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 222
Query: 295 AETGSGKTAAFVLPMLTYISRLPP-----ISEENEAEG-----PYAVVMAPTRELAQQIE 344
A+TGSGKTAAF+LP+L+ I P +EN G P ++V+APTRELA QI
Sbjct: 223 AQTGSGKTAAFLLPILSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIY 282
Query: 345 EETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNY 404
EE KF++ ++ + GG +Q + +GC +++ATPGRL+D +ER L+ C Y
Sbjct: 283 EEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 342
Query: 405 VVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVE 464
+VLDEADRM+DMGFEPQ+ ++ E + + K + R T MFSAT P ++
Sbjct: 343 LVLDEADRMLDMGFEPQIRRIV------------EQDTMPPKGV-RHTMMFSATFPKEIQ 389
Query: 465 RLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELG-DKTAIVFVNT 523
LAR +L + + +G G +E I+Q VV ++E +K S L LL+ G D +VFV T
Sbjct: 390 MLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVET 449
Query: 524 KKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV 583
KK AD + L + Y T++HG +SQ+ RE +L FR+ R +LVAT VA RG+DI +V
Sbjct: 450 KKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNV 509
Query: 584 AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP 641
HVIN+D+P +IE Y HRIGRTGR G G+AT+F + ++ DL +L+++ VP
Sbjct: 510 KHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLNITKDLLDLLVEAKQEVP 567
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 170/424 (40%), Positives = 253/424 (59%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + G P+P+ + + ++ ++ + Y P+P+Q AIP+ +RD++
Sbjct: 192 DDIPVEATGHNGPQPIDRFHDLEMGEIIMGNINLSRYTRPTPVQKHAIPIIKSKRDLMAC 251
Query: 295 AETGSGKTAAFVLPMLTYISRLPP---------ISEENEAEG-----PYAVVMAPTRELA 340
A+TGSGKTAAF+LP+L+ I P ++EN G P ++V+APTRELA
Sbjct: 252 AQTGSGKTAAFLLPVLSQIYTDGPGEALQAAKNSAQENGKYGRRKQYPISLVLAPTRELA 311
Query: 341 QQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLN 400
QI +E KF++ ++ + GG I +Q + +GC +++ATPGRL+D +ER L+
Sbjct: 312 LQIYDEARKFSYRSHVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLLDMMERGKIGLD 371
Query: 401 QCNYVVLDEADRMIDMGFEPQVVGVL--DAMPSSNLKPENEDEELDEKRIYRTTYMFSAT 458
CNY+VLDEADRM+DMGFEPQ+ ++ D MP L R T MFSAT
Sbjct: 372 YCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGL---------------RQTMMFSAT 416
Query: 459 MPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELG-DKTA 517
P ++ LAR +L + + + +G G +E I+Q VV ++E++K S L LL+ G D
Sbjct: 417 FPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLLNATGKDSLT 476
Query: 518 IVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRG 577
+VFV TKK AD + L + GY T++HG +SQ RE +L FR+ R +LVAT VA RG
Sbjct: 477 LVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPILVATAVAARG 536
Query: 578 IDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN 637
+DI +V HVIN+D+P +IE Y HRIGRTGR G G+AT+F + ++ DL +L+++
Sbjct: 537 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNGNITKDLLDILVEAK 596
Query: 638 SPVP 641
VP
Sbjct: 597 QEVP 600
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 170/446 (38%), Positives = 250/446 (56%)
Query: 208 TFDMRVDRHWSEKK--LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRA 265
T+D + W+ + L ER R+ R+ ++I +G IP P++++ E K +LR
Sbjct: 137 TYDDPIKTSWTPPRYVLSMSEERHERV-RKKYHILVEGDGIPPPIKSFKEMKFPAAILRG 195
Query: 266 VERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEA 325
+++ G +P+PIQ+ IP L RD+IGIA TGSGKT F LP++ + ++
Sbjct: 196 LKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 255
Query: 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLG------IKVVSIVGGQSIEEQGFRIRQGCE 379
EGPY +++ P+RELA+Q + L ++ +GG S++EQ IR G
Sbjct: 256 EGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVH 315
Query: 380 VVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE 439
+++ATPGRL+D L+++ L+ C Y+ LDEADRMIDMGFE + + S K +
Sbjct: 316 MMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF-----SYFKGQ-- 368
Query: 440 DEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKES 499
R T +FSATMP ++ A+ L PV + +G AG A+ + Q V +KE
Sbjct: 369 ----------RQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEE 418
Query: 500 EKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEG 559
K L L + ++F K + D + + L G +HGGK QE+R ++E
Sbjct: 419 AKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 477
Query: 560 FRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619
FR + +VLVATDVA +G+D P + HVINYDMP IE Y HRIGRTGR+G TG+ATTF+
Sbjct: 478 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537
Query: 620 FH-DTDVFYDLKQMLIQSNSPVPPEL 644
D V DLK +L+++ VPP L
Sbjct: 538 KACDESVLMDLKALLLEAKQKVPPVL 563
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
Identities = 170/446 (38%), Positives = 250/446 (56%)
Query: 208 TFDMRVDRHWSEKK--LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRA 265
T+D + W+ + L ER R+ R+ ++I +G IP P++++ E KL +LR
Sbjct: 136 TYDDPIKTSWTPPRYVLSMSEERHERV-RKKYHILVEGDGIPPPIKSFKEMKLPAAILRG 194
Query: 266 VERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEA 325
+++ G +P+PIQ+ IP L RD+IGIA TGSGKT F LP++ + ++
Sbjct: 195 LKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 254
Query: 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLG------IKVVSIVGGQSIEEQGFRIRQGCE 379
EGPY +++ P+RELA+Q + L + +GG S++EQ +R G
Sbjct: 255 EGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIGGVSLKEQMETMRHGVH 314
Query: 380 VVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE 439
+++ATPGRL+D L+++ L+ C Y+ LDEADRMIDMGFE + + S K +
Sbjct: 315 IMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF-----SYFKGQ-- 367
Query: 440 DEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKES 499
R T +FSATMP ++ A+ L PV + +G AG A+ + Q V +KE
Sbjct: 368 ----------RQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEE 417
Query: 500 EKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEG 559
K L L + ++F K + D + + L G +HGGK QE+R ++E
Sbjct: 418 AKMVYLLECLQKT-PPPVLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 476
Query: 560 FRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619
FR + +VLVATDVA +G+D P + HVINYDMP IE Y HRIGRTGR+G TG+ATTF+
Sbjct: 477 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 536
Query: 620 FH-DTDVFYDLKQMLIQSNSPVPPEL 644
D V DLK +L+++ VPP L
Sbjct: 537 KACDESVLMDLKALLLEAKQKVPPVL 562
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
Identities = 163/418 (38%), Positives = 252/418 (60%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
E+ + G +P+P+ +++ L + ++ GY P+P+Q +IP RD++
Sbjct: 215 EEIPVEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSC 274
Query: 295 AETGSGKTAAFVLPMLTYISRLPP--ISEENEAEG------PYAVVMAPTRELAQQIEEE 346
A+TGSGKTAAF++P++ I + P + + G P A+V++PTREL+ QI E
Sbjct: 275 AQTGSGKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFNE 334
Query: 347 TVKFAHYLGIKVVSIVGG-QSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYV 405
+ KFA+ I + GG ++ ++Q ++R GC ++IATPGRLID +++ + C Y+
Sbjct: 335 SRKFAYRTPITSALLYGGRENYKDQIHKLRLGCHILIATPGRLIDVMDQGLIGMEGCRYL 394
Query: 406 VLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVER 465
VLDEADRM+DMGFEPQ+ +++ N P E+ R T MFSAT P ++
Sbjct: 395 VLDEADRMLDMGFEPQIRQIVEC----NRMPSKEE---------RITAMFSATFPKEIQL 441
Query: 466 LARKYLR-NPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKT-AIVFVNT 523
LA+ +L+ N V + +G G +E I Q +V ++E EK S L LLD GD + +VFV T
Sbjct: 442 LAQDFLKENYVFLAVGRVGSTSENIMQKIVWVEEDEKRSYLMDLLDATGDSSLTLVFVET 501
Query: 524 KKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV 583
K+ A +A L++ Y V T+HG Q +RE L+ FRT +LVAT VA RG+DIP+V
Sbjct: 502 KRGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNV 561
Query: 584 AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP 641
HVINYD+P +++ Y HRIGRTGR G G+AT+F + ++ +L +++++N +P
Sbjct: 562 KHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNRNIARELMDLIVEANQELP 619
>UNIPROTKB|B4DXX7 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
UCSC:uc011nar.1 Uniprot:B4DXX7
Length = 657
Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
Identities = 167/418 (39%), Positives = 249/418 (59%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + GS P + N+++ + ++ +E Y P+P+Q AIP+ +RD++
Sbjct: 159 DDIPVEATGSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMAC 218
Query: 295 AETGSGKTAAFVLPMLTYISRLPP-----ISEENEAEG-----PYAVVMAPTRELAQQIE 344
A+TGSGKTAAF+LP+L+ I P +EN G P ++V+APTRELA QI
Sbjct: 219 AQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIY 278
Query: 345 EETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNY 404
EE KF++ ++ + GG I +Q + +GC +++ATPGRL+D +ER L+ C Y
Sbjct: 279 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 338
Query: 405 VVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVE 464
+VLDEADRM+DMGFEPQ+ ++ E + + K + R T MFSAT P ++
Sbjct: 339 LVLDEADRMLDMGFEPQIRRIV------------EQDTMPPKGV-RHTMMFSATFPKEIQ 385
Query: 465 RLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELG-DKTAIVFVNT 523
LAR +L + + +G G +E I+Q VV +++ +K S L +L G D +VFV T
Sbjct: 386 MLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDILGATGSDSLTLVFVET 445
Query: 524 KKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV 583
KK AD + L GY T++HG +SQ RE +L FR+ + +LVAT VA RG+DI +V
Sbjct: 446 KKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 505
Query: 584 AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP 641
HVIN+D+P +IE Y HRIGRTGR G G+AT+F + ++ DL +L+++ VP
Sbjct: 506 RHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQEVP 563
>UNIPROTKB|O15523 [details] [associations]
symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
Length = 660
Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
Identities = 167/418 (39%), Positives = 249/418 (59%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + GS P + N+++ + ++ +E Y P+P+Q AIP+ +RD++
Sbjct: 162 DDIPVEATGSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMAC 221
Query: 295 AETGSGKTAAFVLPMLTYISRLPP-----ISEENEAEG-----PYAVVMAPTRELAQQIE 344
A+TGSGKTAAF+LP+L+ I P +EN G P ++V+APTRELA QI
Sbjct: 222 AQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIY 281
Query: 345 EETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNY 404
EE KF++ ++ + GG I +Q + +GC +++ATPGRL+D +ER L+ C Y
Sbjct: 282 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 341
Query: 405 VVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVE 464
+VLDEADRM+DMGFEPQ+ ++ E + + K + R T MFSAT P ++
Sbjct: 342 LVLDEADRMLDMGFEPQIRRIV------------EQDTMPPKGV-RHTMMFSATFPKEIQ 388
Query: 465 RLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELG-DKTAIVFVNT 523
LAR +L + + +G G +E I+Q VV +++ +K S L +L G D +VFV T
Sbjct: 389 MLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDILGATGSDSLTLVFVET 448
Query: 524 KKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV 583
KK AD + L GY T++HG +SQ RE +L FR+ + +LVAT VA RG+DI +V
Sbjct: 449 KKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 508
Query: 584 AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP 641
HVIN+D+P +IE Y HRIGRTGR G G+AT+F + ++ DL +L+++ VP
Sbjct: 509 RHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQEVP 566
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 166/445 (37%), Positives = 249/445 (55%)
Query: 208 TFDMRVDRHW-SEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAV 266
T+D + W + + + M+E R+ ++I +G IP P++++ E K +LR +
Sbjct: 133 TYDDPIKTSWRAPRYILAMSEARHNRVRKKYHILVEGEGIPPPIKSFKEMKFPAAILRGL 192
Query: 267 ERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAE 326
++ G + P+PIQ+ IP L RD+IGIA TGSGKT F LP++ + ++ E
Sbjct: 193 KKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKRE 252
Query: 327 GPYAVVMAPTRELAQQIEEETVKFAHYLG------IKVVSIVGGQSIEEQGFRIRQGCEV 380
GPY +++ P+RELA+Q + L ++ +GG S++EQ I+ G +
Sbjct: 253 GPYGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIGGMSVKEQMETIKHGVHM 312
Query: 381 VIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENED 440
++ATPGRL+D L+++ L+ C Y+ LDEADRMIDMGFE + + S K +
Sbjct: 313 MVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIF-----SYFKGQ--- 364
Query: 441 EELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESE 500
R T +FSATMP ++ A+ L P+ + +G AG A+ + Q V +KE
Sbjct: 365 ---------RQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVVQEVEYVKEEA 415
Query: 501 KFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGF 560
K L L + ++F K + D + + L G +HGGK QE+R ++E F
Sbjct: 416 KMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 474
Query: 561 RTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTF 620
R + +VLVATDVA +G+D P + HVINYDMP IE Y HRIGRTGR+G TG+ATTF+
Sbjct: 475 RDGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 534
Query: 621 H-DTDVFYDLKQMLIQSNSPVPPEL 644
D V DLK +L+++ VPP L
Sbjct: 535 ACDESVLMDLKALLLEAKQKVPPVL 559
>RGD|2314437 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:2314437 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K11594 CTD:8653
EMBL:FJ775727 IPI:IPI00196210 RefSeq:NP_001161137.1
UniGene:Rn.95841 ProteinModelPortal:C9WPN2 PRIDE:C9WPN2
GeneID:100312982 KEGG:rno:100312982 UCSC:RGD:2314437 Uniprot:C9WPN2
Length = 652
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 166/418 (39%), Positives = 251/418 (60%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + G+ P + N+++ ++ ++ +E Y P+P+Q AIP+ ++RD++
Sbjct: 157 DDIPVEATGNNCPPHIENFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 216
Query: 295 AETGSGKTAAFVLPMLTYISRLPP-----ISEENEAEG-----PYAVVMAPTRELAQQIE 344
A+TGSG TAAF+LP+L+ I P +EN G P ++V+APTRELA QI
Sbjct: 217 AQTGSGCTAAFLLPILSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIY 276
Query: 345 EETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNY 404
EE KF++ ++ + GG +Q + +GC +++ATPGRL+D +ER L+ C Y
Sbjct: 277 EEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 336
Query: 405 VVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVE 464
+VLDEADRM+DMGFEPQ+ ++ E + + K + R T MFSAT P ++
Sbjct: 337 LVLDEADRMLDMGFEPQIRRIV------------EQDTMPPKGV-RHTMMFSATFPKEIQ 383
Query: 465 RLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELG-DKTAIVFVNT 523
LAR +L + + +G G +E I+Q VV ++E +K S L LL+ G D +VFV T
Sbjct: 384 MLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLLDLLNATGRDSLTLVFVET 443
Query: 524 KKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV 583
KK AD + L + Y T++HG +SQ+ RE +L FR+ R +LVAT VA RG+DI +V
Sbjct: 444 KKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNV 503
Query: 584 AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP 641
HVIN+D+P +IE Y HRIGRTGR G G+AT+F + ++ DL +L+++ VP
Sbjct: 504 KHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLNITKDLLDLLVEAKQEVP 561
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
Identities = 162/419 (38%), Positives = 247/419 (58%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + G K+P P+ ++ L L+ ++ + P+P+Q ++P+ RD++
Sbjct: 170 DDIPVEASGDKVPEPITSFTAPPLDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMAC 229
Query: 295 AETGSGKTAAFVLPMLT--YISRLPPISEENEAEG-----PYAVVMAPTRELAQQIEEET 347
A+TGSGKT F+ P+L+ Y+ P+ E N A P +VMAPTREL QI EE+
Sbjct: 230 AQTGSGKTGGFLFPVLSESYMKGPAPVPESNGAFSSHKVYPTILVMAPTRELVSQIYEES 289
Query: 348 VKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVL 407
KF++ ++ + GG I +Q + +GC++++ATPGRL D L+R L Y+VL
Sbjct: 290 KKFSYRSWVRACVVYGGADIGQQMRNMDRGCDLLVATPGRLKDLLDRGKVSLANIRYLVL 349
Query: 408 DEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLA 467
DEADRM+DMGFEPQ+ +++ P +D R T MFSAT P ++ LA
Sbjct: 350 DEADRMLDMGFEPQIRYIVEECDM----PAVKD---------RQTLMFSATFPRDIQMLA 396
Query: 468 RKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNA 527
R +L++ V +++G G +E I+Q ++ +++ EK S + LL + IVF TK+ A
Sbjct: 397 RDFLKDYVFLSVGRVGSTSENITQKILYVEDDEKKSVILDLLSANENGLTIVFTETKRMA 456
Query: 528 DMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVI 587
D +A L G+ T +HG +SQ +RE +L F+ +LVAT VA RG+DIP+V+HVI
Sbjct: 457 DNLADYLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPILVATAVAARGLDIPNVSHVI 516
Query: 588 NYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAK 646
NYD+P +I+ Y HRIGRTGRAG G+AT F ++ +V L ++L ++N VP L K
Sbjct: 517 NYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNVVKGLIELLSEANQEVPDFLTK 575
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
Identities = 175/428 (40%), Positives = 243/428 (56%)
Query: 250 MRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 309
M ++E L P++L+A+E GY+ P+PIQ AIP L+ RDV+GIA+TG+GKTA+F LPM
Sbjct: 1 MTKFSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 310 LTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEE 369
+T ++R A P ++V+ PTRELA Q+ E + +L + ++GG S +E
Sbjct: 61 ITLLAR-----GRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKE 115
Query: 370 QGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAM 429
Q I +G +V+IATPGRL+D ER +L +V+DEADRM+DMGF P + +
Sbjct: 116 QDALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLT 175
Query: 430 PSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELI 489
P + R T FSATM P +ER+ +L P + + A+E I
Sbjct: 176 PFT-----------------RQTLFFSATMAPEIERITNTFLSAPARIEVARQATASETI 218
Query: 490 SQHVVMMK-------ESEKFSRLQRLLDELGDK--TAIVFVNTKKNADMVAKNLDKLGYR 540
Q VV+ K SEK + L+ L+D G+K AI+F N K + D+VAK+L K GY
Sbjct: 219 EQGVVLFKGSRRDREASEKRAVLRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYD 278
Query: 541 VTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTH 600
+HG Q QR +L+GFR + +LVA+DVA RG+D+P V+HV N+D+PG+ E Y H
Sbjct: 279 AAPIHGDLDQSQRTRTLDGFREGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVH 338
Query: 601 RIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPGTIPDR 660
RIGRTGRAG+ G A T D D + LIQ + P A+ E KP P R
Sbjct: 339 RIGRTGRAGRDGKAITLCIPRDEKAL-DAIEKLIQKDIPRLENPARTEE---KPEAKPRR 394
Query: 661 P--PRRND 666
P R D
Sbjct: 395 EEKPARAD 402
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 162/420 (38%), Positives = 251/420 (59%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
++ + G +P P+ +++ L L+ ++ + P+P+Q +IP+ + RD++
Sbjct: 138 DNIPVDASGKDVPEPILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMAC 197
Query: 295 AETGSGKTAAFVLPMLTYISRL-P-PISEENEA----EG-PYAVVMAPTRELAQQIEEET 347
A+TGSGKT F+ P+ T + R P P+ E+ ++ +G P A+V+APTRELA QI EE
Sbjct: 198 AQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEA 257
Query: 348 VKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVL 407
KF + ++ + GG I Q + +GC++++ATPGRL D LER L Y+VL
Sbjct: 258 RKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVL 317
Query: 408 DEADRMIDMGFEPQVVGVLDA--MPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVER 465
DEADRM+DMGFEPQ+ +++ MPS EN R T MFSAT P ++
Sbjct: 318 DEADRMLDMGFEPQIRHIVEECDMPSV----EN-----------RQTLMFSATFPVDIQH 362
Query: 466 LARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKK 525
LAR +L N + +++G G +E I+Q ++ + + +K S L LL ++FV TK+
Sbjct: 363 LARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKSALLDLLSAEHKGLTLIFVETKR 422
Query: 526 NADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAH 585
AD + L ++ T +HG ++Q +RE +L F+ ++LVAT VA RG+DIP+V H
Sbjct: 423 MADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTH 482
Query: 586 VINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELA 645
VINYD+P +I+ Y HRIGRTGRAG TGVAT+F ++ ++ L ++L ++N VP L+
Sbjct: 483 VINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNIVKGLMEILNEANQEVPTFLS 542
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
Identities = 160/418 (38%), Positives = 250/418 (59%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + G +P P+ + L L+ + Y+ P+P+Q +IP+ + RD++
Sbjct: 170 DDIPVEASGHDVPEPVNTFTNPPLDDHLISNIALARYQTPTPVQKYSIPIVMNGRDLMAC 229
Query: 295 AETGSGKTAAFVLPMLTYISRLPPISEENEAEG---------PYAVVMAPTRELAQQIEE 345
A+TGSGKT F+ P+L+ + P + A G P ++++APTREL QI +
Sbjct: 230 AQTGSGKTGGFLFPILSQAYQNGPAAPPPSAAGQFGRQRKAYPTSLILAPTRELVSQIFD 289
Query: 346 ETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLER-RYAVLNQCNY 404
E KFA+ ++ + GG I Q +I +GC++++ATPGRL+D +ER R +++N Y
Sbjct: 290 EARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVN-IKY 348
Query: 405 VVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVE 464
++LDEADRM+DMGFEPQ+ +++ N+ N+ R T MFSAT P ++
Sbjct: 349 LILDEADRMLDMGFEPQIRRIVEGEDMPNV---ND----------RQTLMFSATFPRDIQ 395
Query: 465 RLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDK-TAIVFVNT 523
LAR +L++ V +++G G +E I+Q V +++ +K S L +L G ++FV T
Sbjct: 396 MLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTTGLTLIFVET 455
Query: 524 KKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV 583
K+ AD +++ L + T +HG ++Q +RE +LE FR+ RY +LVAT VA RG+DIP+V
Sbjct: 456 KRMADALSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYPILVATAVAARGLDIPNV 515
Query: 584 AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP 641
HVINYD+P +I+ Y HRIGRTGRAG TG+AT F + V DL +L +++ VP
Sbjct: 516 THVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLIDLLKEAHQEVP 573
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
Identities = 162/427 (37%), Positives = 252/427 (59%)
Query: 233 FREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVI 292
+R++ I G +P+P+ + E +L+ V+++G++ P+PIQ A P+ + RD++
Sbjct: 104 YRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMV 163
Query: 293 GIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352
GI+ TGSGKT ++ LP + +I+ P +S +GP +V+APTRELA QI++E KF
Sbjct: 164 GISATGSGKTLSYCLPAIVHINAQPLLSP---GDGPIVLVLAPTRELAVQIQQECTKFGK 220
Query: 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR 412
I+ + GG Q + +G E+ IATPGRL+D L+ L + Y+VLDEADR
Sbjct: 221 SSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADR 280
Query: 413 MIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR 472
M+DMGFEPQ+ ++D ++P+ R T MFSAT P V+RLAR YL
Sbjct: 281 MLDMGFEPQIRKIVD-----QIRPD------------RQTVMFSATWPKEVQRLARDYLN 323
Query: 473 NPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL---GDKTAIVFVNTKKNAD 528
+ + VT+G+ A+ I Q V ++ ++K +RL + ++E+ D ++F TK+ AD
Sbjct: 324 DYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNKVLIFTGTKRVAD 383
Query: 529 MVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN 588
+ + L + G+ +HG K+Q++R+ L FRT + ++VATDVA RGID+ + HV N
Sbjct: 384 DITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFN 443
Query: 589 YDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHE 648
YD PGN E Y HRIGRTGRAG G A T+ T + +L +L ++ + P+L E
Sbjct: 444 YDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDPKL--EE 501
Query: 649 ASKFKPG 655
+++ G
Sbjct: 502 MARYSSG 508
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 710 (255.0 bits), Expect = 2.3e-72, Sum P(2) = 2.3e-72
Identities = 163/398 (40%), Positives = 233/398 (58%)
Query: 234 REDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIG 293
R + I+ G+++P P+ ++ E L ++ ++R G+ P+ IQ P+ L RD++G
Sbjct: 220 RRELEITVSGNELPHPVVSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVG 279
Query: 294 IAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHY 353
IA+TGSGKT A++LP + +I PPI EGP A+V+APTRELAQQI+ + H
Sbjct: 280 IAQTGSGKTLAYMLPAIVHIGNQPPIIR---GEGPIALVLAPTRELAQQIQSVVRDYGHL 336
Query: 354 LG--IKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEAD 411
I+ I GG S Q + +G EV+IATPGRLID LE R L +C Y+VLDEAD
Sbjct: 337 CKPEIRHTCIFGGSSKVPQARDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEAD 396
Query: 412 RMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYL 471
RM+DMGFEPQ+ +++ ++P+ R M+SAT P V+ LA +L
Sbjct: 397 RMLDMGFEPQIRKIIE-----QIRPD------------RQVVMWSATWPKEVQALAGDFL 439
Query: 472 RNPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL---------GDKTAIVFV 521
+ + + IG+ A I Q V + E EK RL LL+E+ G+K IVFV
Sbjct: 440 NDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVCLLNEISPIKNSGNNGNKI-IVFV 498
Query: 522 NTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIP 581
TK + + + + GY T++HG K+Q +R+ L+ FR + N+L+ATDVA RG+D+
Sbjct: 499 ETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVE 558
Query: 582 DVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619
D+ +VINYD P + E Y HRIGRTGR + G A TF T
Sbjct: 559 DLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFT 596
Score = 40 (19.1 bits), Expect = 2.3e-72, Sum P(2) = 2.3e-72
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 108 SKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQN 144
+K P + ++KP WEN E +D ++ N
Sbjct: 179 AKNPGRNLVKPK--------WENLEPFLKDFYNIHPN 207
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
Identities = 169/445 (37%), Positives = 255/445 (57%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + G+ P + ++ + + ++ + Y P+P+Q AIP+ +RD++
Sbjct: 207 DDIPVEATGTNSPGHIESFHDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKTKRDLMAC 266
Query: 295 AETGSGKTAAFVLPMLTYISRLPP----------ISEEN-----EAEGPYAVVMAPTREL 339
A+TGSGKTAAF+LP+L+ I P +EN + P ++V+APTREL
Sbjct: 267 AQTGSGKTAAFLLPVLSQIYSEGPGEALQATKASTQQENGKYVRRKQYPISLVLAPTREL 326
Query: 340 AQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVL 399
A QI +E KFA+ ++ + GG I +Q + +GC +++ATPGRL+D +ER L
Sbjct: 327 ALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGL 386
Query: 400 NQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATM 459
+ C Y+VLDEADRM+DMGFEPQ+ +++ + P+ R T MFSAT
Sbjct: 387 DYCKYLVLDEADRMLDMGFEPQIRRIVE---QDTMPPKGS----------RQTMMFSATF 433
Query: 460 PPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELG-DKTAI 518
P ++ LAR +L + + +G G +E I+Q VV ++E++K S L LL+ G D +
Sbjct: 434 PKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLLNATGKDSLTL 493
Query: 519 VFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGI 578
VFV TKK AD + L + GY T++HG +SQ RE +L FR+ R ++VAT VA RG+
Sbjct: 494 VFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPIMVATAVAARGL 553
Query: 579 DIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNS 638
DI +V HVIN+D+P +IE Y HRIGRTGR G G+AT+F ++++ DL +L+++
Sbjct: 554 DISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFYNDKNSNITKDLLDILVEAKQ 613
Query: 639 PVPPELAKHEASKFKPGTIPDRPPR 663
VP L T RP R
Sbjct: 614 EVPSWLENLAYEHQHKSTNRGRPKR 638
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 735 (263.8 bits), Expect = 4.4e-72, P = 4.4e-72
Identities = 166/429 (38%), Positives = 242/429 (56%)
Query: 222 LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAA 281
L MTE + FR + + G P+P+++WA+ LT ++ +++ Y+ P+ IQ
Sbjct: 480 LANMTETEVLDFRSELGVKITGKDCPKPIQSWAQAGLTEKVHLLLKKFQYEKPTSIQAQT 539
Query: 282 IPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341
IP + RD+IGIA TGSGKT AF+LPM +I P + EG A++M+PTRELA
Sbjct: 540 IPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQP---KSAPGEGMIALIMSPTRELAL 596
Query: 342 QIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCL---ERRYAV 398
QI E KF+ LG++ + GG SI EQ +++G ++V+ TPGR+ID L RR
Sbjct: 597 QIHVECKKFSKVLGLRTACVYGGASISEQIAELKRGADIVVCTPGRMIDILCANNRRITN 656
Query: 399 LNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSAT 458
L + ++VLDEADRM DMGF PQ+ ++D+ ++P+ R T MFSAT
Sbjct: 657 LRRVTFLVLDEADRMFDMGFGPQINCIVDS-----IRPD------------RQTIMFSAT 699
Query: 459 MPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAI 518
PP VE +A+K L P+ + G + I Q V + +F RL LL K I
Sbjct: 700 FPPKVENVAKKILNKPLEIIAGGRSIVSSDIEQFVEVRPTETRFRRLIELLSIWYHKGQI 759
Query: 519 -VFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRG 577
+F N ++ D + + L Y+ +LHG K Q R+ ++ F+ K +L+AT +A RG
Sbjct: 760 LIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVKTILIATPLASRG 819
Query: 578 IDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN 637
+DI D+ V+N+D P ++E Y HR+GRTGRAG G A TF+T + + + L QS
Sbjct: 820 LDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERFSSSIIKALEQSG 879
Query: 638 SPVPPELAK 646
S VP EL K
Sbjct: 880 SKVPDELRK 888
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 168/426 (39%), Positives = 247/426 (57%)
Query: 226 TERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLG 285
++R+ FR+ ++ +G +PRP+ + E +L V+ G++ P+ IQ P+
Sbjct: 115 SQREVDEFRKKCEMTVQGRDVPRPVETFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMA 174
Query: 286 LQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEE 345
L RDV+GIAETGSGKT ++ LP + +I+ P ++ +GP +++APTRELA QI+
Sbjct: 175 LSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLAP---GDGPIVLILAPTRELAVQIQA 231
Query: 346 ETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYV 405
E KF I+ + GG Q + +G EV IATPGRLID LE L + Y+
Sbjct: 232 EISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYL 291
Query: 406 VLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVER 465
VLDEADRM+DMGFEPQ+ ++ S ++P+ R T M+SAT P V +
Sbjct: 292 VLDEADRMLDMGFEPQIRKII-----SQIRPD------------RQTCMWSATWPKEVRQ 334
Query: 466 LARKYLRNPVVVTIGTAG-KATELISQHVVMMKESEKFSR----LQRLLDELGDKTAIVF 520
LA +L N + V IG+ A I+Q V ++ E EK R L+++++ G+K +VF
Sbjct: 335 LASDFLNNYIQVNIGSMDLSANHRITQIVEVISEFEKRDRMIKHLEKIMENRGNK-CLVF 393
Query: 521 VNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDI 580
TK+ AD + + L + G+ ++HG K Q++R+ L F+T + ++VATDVA RGID+
Sbjct: 394 TGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDV 453
Query: 581 PDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPV 640
D+ HVINYD P N E Y HRIGRTGRAG G A TF T + DL +L ++ +
Sbjct: 454 RDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNAKQARDLVTILSEAKQQI 513
Query: 641 PPELAK 646
P LA+
Sbjct: 514 DPRLAE 519
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 162/421 (38%), Positives = 248/421 (58%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
ED + G +P + ++ + +LT + V Y P+P+Q AIP+ + RD++
Sbjct: 279 EDIPVEATGQNVPPNITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMAC 338
Query: 295 AETGSGKTAAFVLPMLTYISRL----PPISEENEA---EGPYAVVMAPTRELAQQIEEET 347
A+TGSGKTAAF++P+L + L PP S + + P +V+APTRELA QI EE
Sbjct: 339 AQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEA 398
Query: 348 VKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVL 407
KFA+ ++ + GG + EQ + +GC +++ATPGRL D + R L ++VL
Sbjct: 399 KKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVL 458
Query: 408 DEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLA 467
DEADRM+DMGFEPQ+ +++ + N+ P + R T MFSAT P ++ LA
Sbjct: 459 DEADRMLDMGFEPQIRRIVEQL---NMPPTGQ----------RQTLMFSATFPKQIQELA 505
Query: 468 RKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDEL--G-----DKTAIVF 520
+L N + + +G G +E I+Q ++ + E +K S L LL + G D ++F
Sbjct: 506 SDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIF 565
Query: 521 VNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDI 580
V TKK AD + + L + + VT++HG ++Q++RE +L FR+ +LVAT VA RG+DI
Sbjct: 566 VETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDI 625
Query: 581 PDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPV 640
P V HVIN+D+P ++E Y HRIGRTGR G GVAT+F + ++ DL ++LI++ +
Sbjct: 626 PHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKNRNICSDLLELLIETKQEI 685
Query: 641 P 641
P
Sbjct: 686 P 686
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 163/430 (37%), Positives = 253/430 (58%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + G I P+ + L LL+ ++ GY P+P+Q +IP+ RD++
Sbjct: 154 DDIPVEVSGGDI-EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMAC 212
Query: 295 AETGSGKTAAFVLPMLTYISRLPPIS---EENEAEG-------PYAVVMAPTRELAQQIE 344
A+TGSGKTA F+ P+L+ P + +++ G P +++APTREL QI
Sbjct: 213 AQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIH 272
Query: 345 EETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNY 404
EE+ KF + ++ ++ GG I Q +I QGC+++ ATPGRL+D ++R L +
Sbjct: 273 EESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKF 332
Query: 405 VVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVE 464
+VLDEADRM+DMGFEPQ+ +++ +++ EE R T MFSAT P ++
Sbjct: 333 LVLDEADRMLDMGFEPQIRHIVEGADMTSV------EE-------RQTLMFSATFPRDIQ 379
Query: 465 RLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDK-TAIVFVNT 523
LAR +L++ V +++G G +E I+Q VV +++SEK S L +L L + ++FV T
Sbjct: 380 LLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSEKRSYLLDILHTLPPEGLTLIFVET 439
Query: 524 KKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV 583
K+ AD + L + T++HG ++Q +RE +LE FR+ R +++VAT VA RG+DIP+V
Sbjct: 440 KRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNV 499
Query: 584 AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPE 643
HVINYD+P +I+ Y HRIGRTGRAG TG A F ++ + +L ++L ++N P
Sbjct: 500 THVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQECPSF 559
Query: 644 L-AKHEASKF 652
L A S F
Sbjct: 560 LIAMARESSF 569
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
Identities = 163/430 (37%), Positives = 248/430 (57%)
Query: 222 LEEMTERDWRIFREDFNISY-KGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMA 280
+ +++ ++ + R+ I+ +G +P+P+ + + ++++++ P+PIQ+
Sbjct: 83 ISKLSTKEVKEIRDKHKITILEGENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPIQIQ 142
Query: 281 AIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELA 340
P+ L +D+IG AETGSGKT AF+LP +I P + +GP +V+APTRELA
Sbjct: 143 GWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNLKY---GDGPIVLVLAPTRELA 199
Query: 341 QQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLN 400
+QI +E +KF+ I+ GG Q + ++QG ++IA PGRLID LE+ L
Sbjct: 200 EQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVHILIACPGRLIDLLEQNVTNLM 259
Query: 401 QCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMP 460
+ Y+VLDEAD+M+DMGFE Q+ ++D ++P+ R T M+SAT P
Sbjct: 260 RVTYLVLDEADKMLDMGFELQIRKIVD-----QIRPD------------RQTLMWSATWP 302
Query: 461 PAVERLARKYLRN-PVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL--GDKT 516
V+ LA+ + P+ V +G+ A I Q + +++E EK L+ LL + +
Sbjct: 303 KEVQALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFKDNDR 362
Query: 517 AIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGR 576
IVFV TKKNAD + K L G +HG K QE+R L F+T + +++ATDVA R
Sbjct: 363 IIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATDVASR 422
Query: 577 GIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQS 636
G+DI +V +VIN+D P IE Y HRIGRTGRAG G + TFLT + DL ++L +S
Sbjct: 423 GLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDLVKILRES 482
Query: 637 NSPVPPELAK 646
PVPP+L K
Sbjct: 483 EQPVPPQLEK 492
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
Identities = 163/430 (37%), Positives = 248/430 (57%)
Query: 222 LEEMTERDWRIFREDFNISY-KGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMA 280
+ +++ ++ + R+ I+ +G +P+P+ + + ++++++ P+PIQ+
Sbjct: 83 ISKLSTKEVKEIRDKHKITILEGENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPIQIQ 142
Query: 281 AIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELA 340
P+ L +D+IG AETGSGKT AF+LP +I P + +GP +V+APTRELA
Sbjct: 143 GWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNLKY---GDGPIVLVLAPTRELA 199
Query: 341 QQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLN 400
+QI +E +KF+ I+ GG Q + ++QG ++IA PGRLID LE+ L
Sbjct: 200 EQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVHILIACPGRLIDLLEQNVTNLM 259
Query: 401 QCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMP 460
+ Y+VLDEAD+M+DMGFE Q+ ++D ++P+ R T M+SAT P
Sbjct: 260 RVTYLVLDEADKMLDMGFELQIRKIVD-----QIRPD------------RQTLMWSATWP 302
Query: 461 PAVERLARKYLRN-PVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL--GDKT 516
V+ LA+ + P+ V +G+ A I Q + +++E EK L+ LL + +
Sbjct: 303 KEVQALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFKDNDR 362
Query: 517 AIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGR 576
IVFV TKKNAD + K L G +HG K QE+R L F+T + +++ATDVA R
Sbjct: 363 IIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATDVASR 422
Query: 577 GIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQS 636
G+DI +V +VIN+D P IE Y HRIGRTGRAG G + TFLT + DL ++L +S
Sbjct: 423 GLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDLVKILRES 482
Query: 637 NSPVPPELAK 646
PVPP+L K
Sbjct: 483 EQPVPPQLEK 492
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
Identities = 163/420 (38%), Positives = 244/420 (58%)
Query: 233 FREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVI 292
FR + +++ +GS +P+P+ + E ++ V+ G+ P+ IQ P+ L RDV+
Sbjct: 107 FRREHSMAVQGSDVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVV 166
Query: 293 GIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352
GIAETGSGKT + LP + +I+ P ++ +GP +++APTRELA QI+ E KF
Sbjct: 167 GIAETGSGKTLTYCLPAIVHINAQPLLAP---GDGPIVLILAPTRELAVQIQAEISKFGK 223
Query: 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR 412
I+ + GG Q + +G EV IATPGRLID LE L + Y+VLDEADR
Sbjct: 224 SSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADR 283
Query: 413 MIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR 472
M+DMGFEPQ+ ++ ++P+ R T M+SAT P V +A +L+
Sbjct: 284 MLDMGFEPQIRKII-----GQIRPD------------RQTLMWSATWPKEVRNMAADFLQ 326
Query: 473 NPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDELGD----KTAI-VFVNTKKN 526
+ + V IG+ A I+Q V ++ ESEK R+ R ++++ D K I +FV TK+
Sbjct: 327 DFIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIRHMEKVMDGKDSKNKILIFVGTKRV 386
Query: 527 ADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHV 586
AD + + L + G+ ++HG K Q +R+ L+ F+T + ++VATDVA RGID+ ++ HV
Sbjct: 387 ADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHV 446
Query: 587 INYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAK 646
+NYD P N E Y HRIGRTGRAG G A TF T ++ DL +L ++ + P LA+
Sbjct: 447 LNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSKQARDLLGVLQEAKQEIDPRLAE 506
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
Identities = 157/418 (37%), Positives = 243/418 (58%)
Query: 233 FREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVI 292
+RE+ I+ +G ++P P+++++E L +++ + R GYK P+ IQ P+ + + +
Sbjct: 264 YREEQEITVRG-QVPNPIQDFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFV 322
Query: 293 GIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352
GIA+TGSGKT ++LP + +I+ P+ +GP A+V+APTRELAQQI++ +F
Sbjct: 323 GIAKTGSGKTLGYILPAIVHINNQQPLQR---GDGPIALVLAPTRELAQQIQQVATEFGS 379
Query: 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR 412
++ + GG Q +++GCE+VIATPGRLID L L +C Y+VLDEADR
Sbjct: 380 SSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADR 439
Query: 413 MIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR 472
M+DMGFEPQ+ ++ S ++P+ R T M+SAT P V++LA +L
Sbjct: 440 MLDMGFEPQIRKIV-----SQIRPD------------RQTLMWSATWPKEVKQLAEDFLG 482
Query: 473 NPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDELGDKTA-----IVFVNTKKN 526
N + + IG+ A I Q V + E K +L+ LL ++ D + I+FV TK+
Sbjct: 483 NYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRR 542
Query: 527 ADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHV 586
D + + + G R +HG KSQ +R+ L FR+ + N+LVATDVA RG+D+ + +V
Sbjct: 543 VDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYV 602
Query: 587 INYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPEL 644
IN+D P N E Y HRIGRTGR+ G + F T ++ L +L ++N + P L
Sbjct: 603 INFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPAL 660
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 169/453 (37%), Positives = 261/453 (57%)
Query: 221 KLEEMTERDWRIFREDF-NISYKGSKIPRPMRNWAEGKLTPELLRAV-ERVGYKNPSPIQ 278
+L +++ + R+D NI KG+ +PRP+ W+ L L + +++ ++ PS IQ
Sbjct: 262 ELSALSDEQVELIRQDLDNIKVKGTDVPRPILKWSHLALPTNLSSVIHDKLKFEKPSAIQ 321
Query: 279 MAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRE 338
A+P L RDVIGIA+TGSGKT ++VLPML +I S++N+ GP ++++PTRE
Sbjct: 322 SQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQD-QQFSKDNQ--GPIGLILSPTRE 378
Query: 339 LAQQIEEETVKFA-HYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYA 397
LA QIE+E + F ++V GG SIE Q +++G E+++ TPGR+ID L
Sbjct: 379 LALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSG 438
Query: 398 -VLN--QCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYM 454
VLN +C +VVLDEADRM D+GFEPQV +L + ++P+ R T +
Sbjct: 439 RVLNLKRCTFVVLDEADRMFDLGFEPQVNKIL-----TQIRPD------------RQTVL 481
Query: 455 FSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMK----ESEKFS--RLQRL 508
FSAT P +E LA++ L +PVV+ +G I Q VV+ + E +K+ R+++L
Sbjct: 482 FSATFPRKMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAEEQDKYKQQRVEKL 541
Query: 509 LD-------ELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFR 561
D E D +VF + +AD + NL Y +HGGK Q R+ +++ F
Sbjct: 542 HDILTNYQIEHPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMDRKYAIKEFA 601
Query: 562 T--KRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619
+ N+L+AT +A RG+D+ ++ VIN+D P ++E Y HR+GRTGRAG G A TF++
Sbjct: 602 SMDSGINILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVS 661
Query: 620 FHDTDVFYDLKQMLIQSNSPVPPELAKHEASKF 652
++L + L S+S + P+L + A+KF
Sbjct: 662 SSQPKEVFNLVKALKLSHSDIDPKL-EEIANKF 693
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 169/453 (37%), Positives = 261/453 (57%)
Query: 221 KLEEMTERDWRIFREDF-NISYKGSKIPRPMRNWAEGKLTPELLRAV-ERVGYKNPSPIQ 278
+L +++ + R+D NI KG+ +PRP+ W+ L L + +++ ++ PS IQ
Sbjct: 262 ELSALSDEQVELIRQDLDNIKVKGTDVPRPILKWSHLALPTNLSSVIHDKLKFEKPSAIQ 321
Query: 279 MAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRE 338
A+P L RDVIGIA+TGSGKT ++VLPML +I S++N+ GP ++++PTRE
Sbjct: 322 SQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQD-QQFSKDNQ--GPIGLILSPTRE 378
Query: 339 LAQQIEEETVKFA-HYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYA 397
LA QIE+E + F ++V GG SIE Q +++G E+++ TPGR+ID L
Sbjct: 379 LALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSG 438
Query: 398 -VLN--QCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYM 454
VLN +C +VVLDEADRM D+GFEPQV +L + ++P+ R T +
Sbjct: 439 RVLNLKRCTFVVLDEADRMFDLGFEPQVNKIL-----TQIRPD------------RQTVL 481
Query: 455 FSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMK----ESEKFS--RLQRL 508
FSAT P +E LA++ L +PVV+ +G I Q VV+ + E +K+ R+++L
Sbjct: 482 FSATFPRKMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAEEQDKYKQQRVEKL 541
Query: 509 LD-------ELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFR 561
D E D +VF + +AD + NL Y +HGGK Q R+ +++ F
Sbjct: 542 HDILTNYQIEHPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMDRKYAIKEFA 601
Query: 562 T--KRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619
+ N+L+AT +A RG+D+ ++ VIN+D P ++E Y HR+GRTGRAG G A TF++
Sbjct: 602 SMDSGINILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVS 661
Query: 620 FHDTDVFYDLKQMLIQSNSPVPPELAKHEASKF 652
++L + L S+S + P+L + A+KF
Sbjct: 662 SSQPKEVFNLVKALKLSHSDIDPKL-EEIANKF 693
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
Identities = 160/428 (37%), Positives = 246/428 (57%)
Query: 221 KLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMA 280
++ M++ D +R I+ +GS P+P+ N+ + + ++ + + +K P+ IQ
Sbjct: 65 EVHHMSQYDVEEYRRKREITVRGSGCPKPVTNFHQAQFPQYVMDVLLQQNFKEPTAIQAQ 124
Query: 281 AIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELA 340
PL L RD++GIA+TGSGKT A++LP + +I+ P + +GP +V+APTRELA
Sbjct: 125 GFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER---GDGPICLVLAPTRELA 181
Query: 341 QQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLN 400
QQ+++ + IK + GG Q + +G E+ IATPGRLID LE L
Sbjct: 182 QQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVGKTNLR 241
Query: 401 QCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMP 460
+C Y+VLDEADRM+DMGFEPQ+ ++D ++P+ R T M+SAT P
Sbjct: 242 RCTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPD------------RQTLMWSATWP 284
Query: 461 PAVERLARKYLRNPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL-GDKT-- 516
V +LA +L++ V + IG A I Q V + E+EK ++L +L++E+ +K
Sbjct: 285 KEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAEKENK 344
Query: 517 AIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGR 576
I+FV TKK D + + + + G+ +HG KSQ +R+ L FR+ + +L+ATDVA R
Sbjct: 345 TIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASR 404
Query: 577 GIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQS 636
G+D+ DV VINYD P + E Y HRIGRT R+ G A TF T + DL ++L ++
Sbjct: 405 GLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQARDLVRVLEEA 464
Query: 637 NSPVPPEL 644
+ P+L
Sbjct: 465 RQAINPKL 472
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 158/411 (38%), Positives = 238/411 (57%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
++ + G +P + + E L L R V R GY +P+Q +IP+ + RD++
Sbjct: 258 DEILVDVTGKDVPPAILTFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMAC 317
Query: 295 AETGSGKTAAFVLPMLTYISRLP-PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHY 353
A+TGSGKTAAF+LP+L+Y+ S+ + + P A+++APTREL QI + KF++
Sbjct: 318 AQTGSGKTAAFLLPILSYMMNEGITASQYLQLQEPEAIIIAPTRELINQIYLDARKFSYG 377
Query: 354 LGIKVVSIVGG-QSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR 412
++ V + GG Q + + +GC ++ ATPGRL+D + + L++ Y+VLDEADR
Sbjct: 378 TCVRPVVVYGGIQPVHAMR-DVEKGCNILCATPGRLLDIVSKEKIGLSKLRYLVLDEADR 436
Query: 413 MIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR 472
M+DMGF P++ ++ P K EKR T MFSAT P + RLA YL+
Sbjct: 437 MLDMGFAPEIEKLM-TKPGMPTK---------EKR---QTLMFSATYPEEIRRLASNYLK 483
Query: 473 NP-VVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVA 531
+ + V +G G A ++Q V+ M+E+ K +L +L + ++FVNTKK AD +A
Sbjct: 484 SEHLFVVVGLVGGACSDVAQTVLEMRENGKMEKLLEILKSSEKERTMIFVNTKKKADFIA 543
Query: 532 KNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDM 591
L + + T++HG + Q QRE +L FRT + V+V T VA RG+DI +V HVINYD+
Sbjct: 544 GYLCQEKFSSTSIHGDREQYQRESALWDFRTGKCTVIVCTAVAARGLDIENVQHVINYDV 603
Query: 592 PGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFY-DLKQMLIQSNSPVP 641
P ++ Y HRIGRTGR G TG AT+F D V L ++L ++ VP
Sbjct: 604 PKEVDEYVHRIGRTGRCGNTGKATSFFNVQDDHVIARPLVKILTDAHQEVP 654
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 387 (141.3 bits), Expect = 2.2e-68, Sum P(2) = 2.2e-68
Identities = 84/210 (40%), Positives = 121/210 (57%)
Query: 450 RTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLL 509
R T +FSATMP ++ A+ L P+VV +G AG A+ + Q + ++ K R+ L
Sbjct: 378 RQTLLFSATMPRKIQFFAKSALVKPIVVNVGRAGAASLNVLQELEFVRSENKLVRVLECL 437
Query: 510 DELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLV 569
+ K ++F K + D + + L G V ++HGGK Q R +E FR +VLV
Sbjct: 438 QKTSPKV-LIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVLV 496
Query: 570 ATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFH-DTDVFYD 628
ATDVA +G+D + HVIN+DMP +IE Y HRIGRTGR+G+ G+ATTF+ + V D
Sbjct: 497 ATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINKKSEMSVLSD 556
Query: 629 LKQMLIQSNSPVPPELAKHEASKFKPGTIP 658
LKQ+L ++ +P E K A + GT P
Sbjct: 557 LKQLLAEAGQELP-EFLKMLAGD-EEGTAP 584
Score = 367 (134.2 bits), Expect = 2.2e-68, Sum P(2) = 2.2e-68
Identities = 80/211 (37%), Positives = 122/211 (57%)
Query: 222 LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERV-GYKNPSPIQMA 280
+ ++ D+ I R+ IS +G IP P+ ++ E K LL +++ G P+ IQ+
Sbjct: 160 IRRQSQEDYEIQRKRLGISCEGDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVTPTAIQIQ 219
Query: 281 AIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELA 340
IP+ L RD+IGIA TGSGKT FVLP++ + +EGP+ +++ P+RELA
Sbjct: 220 GIPVALSGRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLIIVPSRELA 279
Query: 341 QQIEEETVKFAHYLG------IKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLER 394
+QI + ++ LG ++ +GG I EQ +R G +V+ATPGRL D L +
Sbjct: 280 RQIFDLIIEMFDALGKAGLPEMRAGLCIGGVPIGEQAKDVRDGIHIVVATPGRLSDMLTK 339
Query: 395 RYAVLNQCNYVVLDEADRMIDMGFEPQVVGV 425
+ L C Y+VLDEADRM+DMGFE ++ +
Sbjct: 340 KIINLEVCRYLVLDEADRMLDMGFEDEIKSI 370
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 156/423 (36%), Positives = 242/423 (57%)
Query: 226 TERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLG 285
T ++ +R ++ +G P+P+ N+ E ++ ++R + P+ IQ P+
Sbjct: 57 TAQEVEQYRSSKEVTVRGHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVA 116
Query: 286 LQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEE 345
L D++G+A+TGSGKT +++LP + +I+ P + +GP +V+APTRELAQQ+++
Sbjct: 117 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPICLVLAPTRELAQQVQQ 173
Query: 346 ETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYV 405
+++ +K I GG Q + +G E+ IATPGRLID LE L +C Y+
Sbjct: 174 VAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYL 233
Query: 406 VLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVER 465
VLDEADRM+DMGFEPQ+ ++D ++P+ R T M+SAT P V +
Sbjct: 234 VLDEADRMLDMGFEPQIRKIVD-----QIRPD------------RQTLMWSATWPKEVRQ 276
Query: 466 LARKYLRNPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL-GDKT--AIVFV 521
LA +L+ V + IG A I Q V + + EK +L RL++E+ +K IVFV
Sbjct: 277 LAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFV 336
Query: 522 NTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIP 581
TK+ D + + + + G+ +HG KSQ++R+ L F+ + +L+ATDVA RG+D+
Sbjct: 337 ETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVE 396
Query: 582 DVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP 641
DV VINYD P + E Y HRIGRT R+ KTG A TF T ++ DL +L ++N +
Sbjct: 397 DVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQAIN 456
Query: 642 PEL 644
P+L
Sbjct: 457 PKL 459
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 156/423 (36%), Positives = 242/423 (57%)
Query: 226 TERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLG 285
T ++ +R ++ +G P+P+ N+ E ++ ++R + P+ IQ P+
Sbjct: 65 TAQEVEQYRSSKEVTVRGHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVA 124
Query: 286 LQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEE 345
L D++G+A+TGSGKT +++LP + +I+ P + +GP +V+APTRELAQQ+++
Sbjct: 125 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPICLVLAPTRELAQQVQQ 181
Query: 346 ETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYV 405
+++ +K I GG Q + +G E+ IATPGRLID LE L +C Y+
Sbjct: 182 VAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYL 241
Query: 406 VLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVER 465
VLDEADRM+DMGFEPQ+ ++D ++P+ R T M+SAT P V +
Sbjct: 242 VLDEADRMLDMGFEPQIRKIVD-----QIRPD------------RQTLMWSATWPKEVRQ 284
Query: 466 LARKYLRNPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL-GDKT--AIVFV 521
LA +L+ V + IG A I Q V + + EK +L RL++E+ +K IVFV
Sbjct: 285 LAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFV 344
Query: 522 NTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIP 581
TK+ D + + + + G+ +HG KSQ++R+ L F+ + +L+ATDVA RG+D+
Sbjct: 345 ETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVE 404
Query: 582 DVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP 641
DV VINYD P + E Y HRIGRT R+ KTG A TF T ++ DL +L ++N +
Sbjct: 405 DVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQAIN 464
Query: 642 PEL 644
P+L
Sbjct: 465 PKL 467
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 155/416 (37%), Positives = 240/416 (57%)
Query: 233 FREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVI 292
+R I+ KG P+P+ + E ++ + + + +P+PIQ P+ L +D++
Sbjct: 78 YRRSKEITVKGRDGPKPIVKFHEANFPKYVMDVITKQNWTDPTPIQAQGWPVALSGKDMV 137
Query: 293 GIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352
GIA+TGSGKT +++LP + +I+ P + +GP +V+APTRELAQQ+++ ++
Sbjct: 138 GIAQTGSGKTLSYLLPAIVHINHQPFLEH---GDGPICLVLAPTRELAQQVQQVAAEYGK 194
Query: 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR 412
IK I GG Q + +G E+ IATPGRLID LE L +C Y+VLDEADR
Sbjct: 195 ASRIKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADR 254
Query: 413 MIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR 472
M+DMGFEPQ+ ++D ++P+ R T M+SAT P V +LA +L+
Sbjct: 255 MLDMGFEPQIRKIVD-----QIRPD------------RQTLMWSATWPKEVRQLAEDFLK 297
Query: 473 NPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL-GDKT--AIVFVNTKKNAD 528
+ + +G A I Q V + + EK +L RLL+E+ +K I+FV TK+ D
Sbjct: 298 EYIQINVGALQLSANHNILQIVDVCNDGEKEDKLIRLLEEIMSEKENKTIIFVETKRRCD 357
Query: 529 MVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN 588
+ + + + G+ +HG K+Q++R+ L F+ + +L+ATDVA RG+D+ DV VIN
Sbjct: 358 DLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVIN 417
Query: 589 YDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPEL 644
+D P N E Y HRIGRT R+ KTG A TF T ++ +DL +L ++N + P+L
Sbjct: 418 FDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQAINPKL 473
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 365 (133.5 bits), Expect = 5.2e-68, Sum P(2) = 5.2e-68
Identities = 76/180 (42%), Positives = 109/180 (60%)
Query: 452 TYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDE 511
T +FSATMP ++R+A +++ P V + I Q + ++E +KF L RLLD
Sbjct: 179 TLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDI 238
Query: 512 LGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT 571
+ AIVF TK+ D +A+ L+ GY +HG +Q +R ++L F+ VLVAT
Sbjct: 239 QSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVAT 298
Query: 572 DVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQ 631
DVA RG+DI V HV N+D+P + E Y HRIGRTGRAGKTG+A TF+T + + ++Q
Sbjct: 299 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQ 358
Score = 351 (128.6 bits), Expect = 5.2e-68, Sum P(2) = 5.2e-68
Identities = 74/176 (42%), Positives = 111/176 (63%)
Query: 258 LTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 317
L+ +L++A+ R+G++ +PIQ IPLGL +DVIG A+TG+GKTAAF +P+ + ++
Sbjct: 10 LSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPL---VEKIN 66
Query: 318 PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 377
P E+ A+V+APTRELA Q+ EE K KV+ I GGQ I Q +++
Sbjct: 67 P-----ESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKN 121
Query: 378 CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSN 433
+++ TPGRL+D + RR LN N VV+DEAD M++MGF + +L +PS +
Sbjct: 122 PNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEH 177
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
Identities = 157/402 (39%), Positives = 234/402 (58%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + G+ +P + + E KL L + R GY P+P+Q +P+ RD++
Sbjct: 165 DDILVDVSGTNLPAAIMTFEEAKLCESLENNISRSGYVKPTPVQKYGLPIISAGRDLMAC 224
Query: 295 AETGSGKTAAFVLPMLTYI-SRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHY 353
A+TGSGKTAAF+LP+L + + S +E + P AV++APTREL QI +E KF+
Sbjct: 225 AQTGSGKTAAFLLPILQQLMADGVAASRFSEIQEPEAVIVAPTRELINQIYQEARKFSFG 284
Query: 354 LGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRM 413
++ V + GG + Q I +GC V+ TPGRL+D + R L++ ++VLDEADRM
Sbjct: 285 TCVRPVVVYGGVNTGYQMREIEKGCNVLCGTPGRLLDMIGRGKVGLSKVRHLVLDEADRM 344
Query: 414 IDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR- 472
+DMGFEP + ++ + P P E+ R T MFSAT P ++RLA +L+
Sbjct: 345 LDMGFEPDMRRLVGS-PGM---PSKEE---------RQTLMFSATFPEDIQRLAADFLKV 391
Query: 473 NPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAK 532
+ + V +G G A + Q + + + K +L LL +G + +VFV TK+ AD +A
Sbjct: 392 DYLFVAVGVVGGACTDVEQTFLQVTKFNKREQLLDLLRTIGSERTMVFVETKRQADFIAA 451
Query: 533 NLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMP 592
L + T++HG + Q +RE +L FR+ + VLVAT VA RG+DIPDV HV+N+D+P
Sbjct: 452 FLCQEKVPTTSIHGDREQREREKALADFRSGKCPVLVATSVASRGLDIPDVQHVVNFDLP 511
Query: 593 GNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLI 634
I+ Y HRIGRTGR G TG A ++F+D DV L + L+
Sbjct: 512 NTIDDYVHRIGRTGRCGNTGRA---VSFYDPDVDSQLARSLV 550
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 160/420 (38%), Positives = 232/420 (55%)
Query: 239 ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETG 298
+ G P + + E L L + + GY +P+Q +IP+ L RD++ A+TG
Sbjct: 256 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 315
Query: 299 SGKTAAFVLPMLTYISRLP-PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIK 357
SGKTAAF+LP+L ++ S E + P +++APTREL QI E KF+ ++
Sbjct: 316 SGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVR 375
Query: 358 VVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG 417
V I GG + +I QGC ++ ATPGRL+D + + L Q Y+VLDEADRM+DMG
Sbjct: 376 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMG 435
Query: 418 FEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR-NPVV 476
F P++ ++ P P E R T MFSAT P ++RLA ++L+ N +
Sbjct: 436 FGPEMKKLISC-PGM---PSKEQ---------RQTLMFSATFPEEIQRLAAEFLKSNYLF 482
Query: 477 VTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDK 536
V +G G A + Q V+ + + K +L +L +GD+ +VFV TKK AD +A L +
Sbjct: 483 VAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQ 542
Query: 537 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIE 596
T++HG + Q +RE +L FR + VLVAT VA RG+DI +V HVIN+D+P I+
Sbjct: 543 EKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTID 602
Query: 597 MYTHRIGRTGRAGKTGVATTFLTFH-DTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPG 655
Y HRIGRTGR G TG A +F D + L ++L + VP L + S + PG
Sbjct: 603 EYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFSTYIPG 662
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 160/420 (38%), Positives = 232/420 (55%)
Query: 239 ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETG 298
+ G P + + E L L + + GY +P+Q +IP+ L RD++ A+TG
Sbjct: 276 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 335
Query: 299 SGKTAAFVLPMLTYISRLP-PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIK 357
SGKTAAF+LP+L ++ S E + P +++APTREL QI E KF+ ++
Sbjct: 336 SGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVR 395
Query: 358 VVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG 417
V I GG + +I QGC ++ ATPGRL+D + + L Q Y+VLDEADRM+DMG
Sbjct: 396 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMG 455
Query: 418 FEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR-NPVV 476
F P++ ++ P P E R T MFSAT P ++RLA ++L+ N +
Sbjct: 456 FGPEMKKLISC-PGM---PSKEQ---------RQTLMFSATFPEEIQRLAAEFLKSNYLF 502
Query: 477 VTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDK 536
V +G G A + Q V+ + + K +L +L +GD+ +VFV TKK AD +A L +
Sbjct: 503 VAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQ 562
Query: 537 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIE 596
T++HG + Q +RE +L FR + VLVAT VA RG+DI +V HVIN+D+P I+
Sbjct: 563 EKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTID 622
Query: 597 MYTHRIGRTGRAGKTGVATTFLTFH-DTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPG 655
Y HRIGRTGR G TG A +F D + L ++L + VP L + S + PG
Sbjct: 623 EYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFSTYIPG 682
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 384 (140.2 bits), Expect = 2.2e-67, Sum P(2) = 2.2e-67
Identities = 90/229 (39%), Positives = 132/229 (57%)
Query: 443 LDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKF 502
+DE R T +FSAT+P VERL+R Y+ P + I AG T+ I + ++E EK
Sbjct: 171 IDELPTKRMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKL 230
Query: 503 SRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRT 562
S L+ + + I+F T++N D V + LD++ Y +HGG QE R ++ FR
Sbjct: 231 SLLKDVTTIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRK 290
Query: 563 KRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHD 622
++ LVATDVA RGIDI ++ HVINYD+P E Y HR GRTGRAG +G A TF+T ++
Sbjct: 291 GKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYE 350
Query: 623 TDVFYDLKQMLI-----QSNSPVPPELAKHEASKFKPGTIPDRPPRRND 666
D F + + I ++N+P E+ K +A+ F+ I +P + D
Sbjct: 351 -DRFLEEIEAYIGFAIPKANAPSKEEVMKGKAA-FEE-KIQAKPTIKKD 396
Score = 323 (118.8 bits), Expect = 2.2e-67, Sum P(2) = 2.2e-67
Identities = 71/209 (33%), Positives = 124/209 (59%)
Query: 251 RNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPML 310
++++ L+ E+ RA+ +GY++P+ +Q IP+ LQ++D++ ++TGSGKTA+F +P+
Sbjct: 4 KSFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63
Query: 311 TYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQ 370
+ EEN+ P A+V+ PTRELA Q++E+ + IK +I G Q
Sbjct: 64 EMVEW-----EENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQ 115
Query: 371 GFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMP 430
++Q +V+ TPGR++D +E+ L + Y+V+DEAD M++MGF QV ++D +P
Sbjct: 116 KLELKQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELP 175
Query: 431 SSNLKPE-NEDEELDEKRIYRTTYMFSAT 458
+ + + D +R+ RT YM + T
Sbjct: 176 TKRMTMLFSATLPEDVERLSRT-YMNAPT 203
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 384 (140.2 bits), Expect = 2.2e-67, Sum P(2) = 2.2e-67
Identities = 90/229 (39%), Positives = 132/229 (57%)
Query: 443 LDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKF 502
+DE R T +FSAT+P VERL+R Y+ P + I AG T+ I + ++E EK
Sbjct: 171 IDELPTKRMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKL 230
Query: 503 SRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRT 562
S L+ + + I+F T++N D V + LD++ Y +HGG QE R ++ FR
Sbjct: 231 SLLKDVTTIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRK 290
Query: 563 KRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHD 622
++ LVATDVA RGIDI ++ HVINYD+P E Y HR GRTGRAG +G A TF+T ++
Sbjct: 291 GKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYE 350
Query: 623 TDVFYDLKQMLI-----QSNSPVPPELAKHEASKFKPGTIPDRPPRRND 666
D F + + I ++N+P E+ K +A+ F+ I +P + D
Sbjct: 351 -DRFLEEIEAYIGFAIPKANAPSKEEVMKGKAA-FEE-KIQAKPTIKKD 396
Score = 323 (118.8 bits), Expect = 2.2e-67, Sum P(2) = 2.2e-67
Identities = 71/209 (33%), Positives = 124/209 (59%)
Query: 251 RNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPML 310
++++ L+ E+ RA+ +GY++P+ +Q IP+ LQ++D++ ++TGSGKTA+F +P+
Sbjct: 4 KSFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63
Query: 311 TYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQ 370
+ EEN+ P A+V+ PTRELA Q++E+ + IK +I G Q
Sbjct: 64 EMVEW-----EENK---PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQ 115
Query: 371 GFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMP 430
++Q +V+ TPGR++D +E+ L + Y+V+DEAD M++MGF QV ++D +P
Sbjct: 116 KLELKQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELP 175
Query: 431 SSNLKPE-NEDEELDEKRIYRTTYMFSAT 458
+ + + D +R+ RT YM + T
Sbjct: 176 TKRMTMLFSATLPEDVERLSRT-YMNAPT 203
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 371 (135.7 bits), Expect = 2.3e-67, Sum P(2) = 2.3e-67
Identities = 77/180 (42%), Positives = 109/180 (60%)
Query: 452 TYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDE 511
T +FSATMP ++R+A +++ NP V + I Q + + E +KF L RLLD
Sbjct: 179 TLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDI 238
Query: 512 LGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT 571
+ AIVF TK+ D + + L+ GY +HG +Q +R ++L F+ VLVAT
Sbjct: 239 QSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVAT 298
Query: 572 DVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQ 631
DVA RG+DI V HV N+D+P + E Y HRIGRTGRAGKTG+A TF+T + D+ ++Q
Sbjct: 299 DVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQ 358
Score = 338 (124.0 bits), Expect = 2.3e-67, Sum P(2) = 2.3e-67
Identities = 72/177 (40%), Positives = 111/177 (62%)
Query: 257 KLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRL 316
+L+ +L +A++R+G++ +PIQ IPLGL +DVIG A+TG+GKTAAF +P+ + ++
Sbjct: 9 QLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPL---VEKI 65
Query: 317 PPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQ 376
P E+ A+V+APTRELA Q+ EE K +V+ I GGQ I Q +++
Sbjct: 66 NP-----ESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKK 120
Query: 377 GCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSN 433
+++ TPGRL+D + RR L N VVLDEAD M++MGF + +L +P+ +
Sbjct: 121 NPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEH 177
Score = 41 (19.5 bits), Expect = 4.0e-36, Sum P(2) = 4.0e-36
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 132 EDTSRDMNALYQNPH 146
+D R + AL +NPH
Sbjct: 109 QDIGRQIRALKKNPH 123
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 167/431 (38%), Positives = 246/431 (57%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + GS P+ + + E L L + V + GY P+P+Q IP+ RD++
Sbjct: 261 DDILVDVSGSNPPKAIMTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMAC 320
Query: 295 AETGSGKTAAFVLPMLT-YISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHY 353
A+TGSGKTAAF+LP+L +++ S+ +E + P A+++APTREL QI E KFA+
Sbjct: 321 AQTGSGKTAAFLLPILQRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAYG 380
Query: 354 LGIKVVSIVGGQSIEEQGFRIRQ---GCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEA 410
++ V + GG + G+ IR+ GC V+ ATPGRL D + R L++ Y+VLDEA
Sbjct: 381 TCVRPVVVYGGINT---GYTIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEA 437
Query: 411 DRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKY 470
DRM+DMGFEP++ ++ A P P E+ R T MFSAT P ++R+A +
Sbjct: 438 DRMLDMGFEPEMRKLV-ASPGM---PSKEE---------RQTLMFSATYPEDIQRMAADF 484
Query: 471 LR-NPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADM 529
L+ + + + +G G A + Q VV + + K +L LL G++ +VFV TK++AD
Sbjct: 485 LKVDYIFLAVGVVGGACSDVEQTVVQVDQYSKRDQLLELLRATGNERTMVFVETKRSADF 544
Query: 530 VAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINY 589
+A L + T++HG + Q +RE +L FR VLVAT VA RG+DI V HV+N+
Sbjct: 545 IATFLCQEKISTTSIHGDREQREREKALSDFRLGHCPVLVATSVAARGLDIEQVQHVVNF 604
Query: 590 DMPGNIEMYTHRIGRTGRAGKTGVATTFLTFH-DTDVFYDLKQMLIQSNSPVPP---ELA 645
DMP +I+ Y HRIGRTGR G TG A +F DT + L ++L + VP E+A
Sbjct: 605 DMPSSIDEYVHRIGRTGRCGNTGRAVSFFNPESDTPLARSLVKVLSGAQQVVPKWLEEVA 664
Query: 646 --KHEASKFKP 654
H + F P
Sbjct: 665 FSAHGTTGFNP 675
>UNIPROTKB|Q4R5S7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
Length = 725
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 160/421 (38%), Positives = 233/421 (55%)
Query: 239 ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETG 298
+ G P + + E L L + + GY +P+Q +IP+ L RD++ A+TG
Sbjct: 277 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 336
Query: 299 SGKTAAFVLPMLTYISRLPPISEE--NEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGI 356
SGKTAAF+LP+L ++ I+ E + P +++APTREL QI E KF+ +
Sbjct: 337 SGKTAAFLLPILAHMMH-DGITASCFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCV 395
Query: 357 KVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDM 416
+ V I GG + +I QGC ++ ATPGRL+D + + L Q Y+VLDEADRM+DM
Sbjct: 396 RAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDM 455
Query: 417 GFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR-NPV 475
GF P++ ++ P P E R T MFSAT P ++RLA ++L+ N +
Sbjct: 456 GFGPEMKKLISC-PGM---PSKEQ---------RQTLMFSATFPEEIQRLAAEFLKSNYL 502
Query: 476 VVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLD 535
V +G G A + Q V+ + + K +L +L +GD+ +VFV TKK AD +A L
Sbjct: 503 FVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLC 562
Query: 536 KLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNI 595
+ T++HG + Q +RE +L FR + VLVAT VA RG+DI +V HVIN+D+P I
Sbjct: 563 QEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTI 622
Query: 596 EMYTHRIGRTGRAGKTGVATTFLTFH-DTDVFYDLKQMLIQSNSPVPPELAKHEASKFKP 654
+ Y HRIGRTGR G TG A +F D + L ++L + VP L + S + P
Sbjct: 623 DEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFSTYIP 682
Query: 655 G 655
G
Sbjct: 683 G 683
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 159/419 (37%), Positives = 232/419 (55%)
Query: 239 ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETG 298
+ G P + + E L L + + GY +P+Q +IP+ L RD++ A+TG
Sbjct: 250 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 309
Query: 299 SGKTAAFVLPMLTYISRLP-PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIK 357
SGKTAAF+LP+L ++ R S E + P +++APTREL QI E KF+ ++
Sbjct: 310 SGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 369
Query: 358 VVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG 417
V I GG +I QGC ++ ATPGRL+D + + L Q Y+VLDEADRM+DMG
Sbjct: 370 AVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMG 429
Query: 418 FEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR-NPVV 476
F P++ ++ P P E R T +FSAT P ++RLA ++L+ N +
Sbjct: 430 FGPEMKKLISC-PGM---PSKEQ---------RQTLLFSATFPEEIQRLAGEFLKSNYLF 476
Query: 477 VTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDK 536
V +G G A + Q ++ + + K +L +L +GD+ +VFV TKK AD +A L +
Sbjct: 477 VAVGQVGGACRDVQQSILQVGQYSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQ 536
Query: 537 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIE 596
T++HG + Q +RE +L FR + VLVAT VA RG+DI +V HVIN+D+P I+
Sbjct: 537 EKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTID 596
Query: 597 MYTHRIGRTGRAGKTGVATTFL-TFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKP 654
Y HRIGRTGR G TG A +F T D + L ++L + VP L + S + P
Sbjct: 597 EYVHRIGRTGRCGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWLEEIAFSSYAP 655
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
Identities = 157/431 (36%), Positives = 251/431 (58%)
Query: 220 KKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQM 279
+ + MTE++ +R+ I G + RP++ + + + +++ A+++ Y+ P+ IQ
Sbjct: 197 ESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQC 256
Query: 280 AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339
A+P+ L RDVIGIA+TGSGKTAAFVLPM+ +I P + + EGP V+ APTREL
Sbjct: 257 QALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRD---EGPIGVICAPTREL 313
Query: 340 AQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVL 399
A QI E KF+ G++V ++ GG S EQ ++ GCE+V+ATPGRLID L+ + +
Sbjct: 314 AHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTM 373
Query: 400 NQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATM 459
+ +Y+VLDEADRM D+GFEPQV ++ ++P+ + ++ T + +
Sbjct: 374 MRASYLVLDEADRMFDLGFEPQVRSIV-----GQIRPDRQT------LLFSATMPWK--V 420
Query: 460 PPAVERLARKYLRNPVVVTIGTAGK-ATELISQHVVMMKESEKF----SRLQRLLDELGD 514
+ +R V +G A + T++++ V+ ++EK +L ++DE GD
Sbjct: 421 EKLAREILSDPIR-VTVGEVGMANEDITQVVN---VIPSDAEKLPWLLEKLPGMIDE-GD 475
Query: 515 KTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVA 574
+VF + K D + L ++V LHG K Q R +L+ F++ ++VL+ATDVA
Sbjct: 476 --VLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVA 533
Query: 575 GRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAG-KTGVATTFLTFHDTDVFYDLKQML 633
RG+DI + V+NYD+ +++M+ HRIGRTGRAG + GVA T +T + +L L
Sbjct: 534 ARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAGELVNSL 593
Query: 634 IQSNSPVPPEL 644
+ + VPPEL
Sbjct: 594 VAAGQNVPPEL 604
>DICTYBASE|DDB_G0283661 [details] [associations]
symbol:ddx3 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
Length = 712
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 164/441 (37%), Positives = 256/441 (58%)
Query: 213 VDRHWSE---KKLEEMTERDWRIFREDFNISYKGSK-IPRPMRNWAEGKLTPELLRAVER 268
++ H +E KK ++ D+ + +D +IS + S+ I P+ ++A+ L LL ++
Sbjct: 206 LEEHKAEEIFKKNDDNIGIDFNAYDDD-DISIETSEHICAPLNSFADVDLGDVLLGNIKH 264
Query: 269 VGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYI-----SRLPPISEEN 323
Y P+P+Q +A+P+ L+ RD++ A+TGSGKTAAF+ P+++ I PP +
Sbjct: 265 AKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFLFPIISGILLDGAPEAPPAYKPG 324
Query: 324 --EAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVV 381
A P A+V+APTRELAQQI +E KF++ + V I GG + Q + +GC+++
Sbjct: 325 VPRAACPRALVLAPTRELAQQIFDEANKFSYGSPVSSVVIYGGAEVFHQINELDRGCDIL 384
Query: 382 IATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDE 441
+AT GRL+D L R L++ Y+VLDEADRM+DMGFEPQ+ ++ P D
Sbjct: 385 VATTGRLVDLLMRGRVSLSKIKYLVLDEADRMLDMGFEPQIRQIISEFDM----PGCRD- 439
Query: 442 ELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEK 501
R T MFSAT P ++ LA +L N + + +G G T+ I+Q + + E +K
Sbjct: 440 --------RQTLMFSATFPKQIQNLAADFLYNYIFLKVGVVG-TTQNITQRIEYVVEEDK 490
Query: 502 FSRLQRLLDEL-GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGF 560
S L L L D ++FV TK++ D + L++ + T +HG +Q +RE +L+ F
Sbjct: 491 NSYLLDYLSGLKSDGLCLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSF 550
Query: 561 RTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTF 620
R+ LVATD+A RG+ I +V VIN+D+P +I +Y HRIGRTGRAGK G+A +F
Sbjct: 551 RSFATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNE 610
Query: 621 HDTDVFYDLKQMLIQSNSPVP 641
+ V +L +++ SN +P
Sbjct: 611 KNKPVGAELLKLMKASNQDIP 631
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 156/427 (36%), Positives = 241/427 (56%)
Query: 222 LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAA 281
L T ++ +R I+ +G P+P+ N+ E ++ + R + P+ IQ
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 282 IPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341
P+ L D++G+A+TGSGKT +++LP + +I+ P + +GP +V+APTRELAQ
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPICLVLAPTRELAQ 181
Query: 342 QIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQ 401
Q+++ ++ +K I GG Q + +G E+ IATPGRLID LE L +
Sbjct: 182 QVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRR 241
Query: 402 CNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPP 461
Y+VLDEADRM+DMGFEPQ+ ++D ++P+ R T M+SAT P
Sbjct: 242 TTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPD------------RQTLMWSATWPK 284
Query: 462 AVERLARKYLRNPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL-GDKT--A 517
V +LA +L++ + + IG A I Q V + + EK +L RL++E+ +K
Sbjct: 285 EVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKT 344
Query: 518 IVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRG 577
IVFV TK+ D + + + + G+ +HG KSQ++R+ L F+ + +L+ATDVA RG
Sbjct: 345 IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRG 404
Query: 578 IDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN 637
+D+ DV VINYD P + E Y HRIGRT R+ KTG A TF T ++ DL +L ++N
Sbjct: 405 LDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREAN 464
Query: 638 SPVPPEL 644
+ P+L
Sbjct: 465 QAINPKL 471
>UNIPROTKB|F1MYC6 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
Uniprot:F1MYC6
Length = 729
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 159/420 (37%), Positives = 233/420 (55%)
Query: 239 ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETG 298
+ G P + + E L L + + GY +P+Q +IP+ RD++ A+TG
Sbjct: 278 VEVSGHDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTG 337
Query: 299 SGKTAAFVLPMLTYISRLP-PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIK 357
SGKTAAF+LP+L ++ R S E + P +++APTREL QI E KF+ ++
Sbjct: 338 SGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 397
Query: 358 VVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG 417
V I GG + +I QGC ++ ATPGRL+D + + L Q Y+VLDEADRM+DMG
Sbjct: 398 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMG 457
Query: 418 FEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR-NPVV 476
F P++ ++ P P E R T MFSAT P ++RLA ++L+ N +
Sbjct: 458 FGPEMKKLISC-PGM---PSKEQ---------RQTLMFSATFPEEIQRLAGEFLKSNYLF 504
Query: 477 VTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDK 536
V +G G A + Q ++ + + K +L +L +GD+ +VFV TKK AD +A L +
Sbjct: 505 VAVGQVGGACRDVQQTILQVGQYSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQ 564
Query: 537 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIE 596
T++HG + Q +RE +L FR + VLVAT VA RG+DI +V HVIN+D+P I+
Sbjct: 565 EKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTID 624
Query: 597 MYTHRIGRTGRAGKTGVATTFLTFH-DTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPG 655
Y HRIGRTGR G TG A +F D+ + L ++L + VP L + S + PG
Sbjct: 625 EYVHRIGRTGRCGNTGRAISFFDLESDSQLAQPLVKVLSDAQQDVPAWLEEIAFSTYGPG 684
>UNIPROTKB|Q5W5U4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
Length = 729
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 159/420 (37%), Positives = 233/420 (55%)
Query: 239 ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETG 298
+ G P + + E L L + + GY +P+Q +IP+ RD++ A+TG
Sbjct: 278 VEVSGHDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTG 337
Query: 299 SGKTAAFVLPMLTYISRLP-PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIK 357
SGKTAAF+LP+L ++ R S E + P +++APTREL QI E KF+ ++
Sbjct: 338 SGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 397
Query: 358 VVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG 417
V I GG + +I QGC ++ ATPGRL+D + + L Q Y+VLDEADRM+DMG
Sbjct: 398 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMG 457
Query: 418 FEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR-NPVV 476
F P++ ++ P P E R T MFSAT P ++RLA ++L+ N +
Sbjct: 458 FGPEMKKLISC-PGM---PSKEQ---------RQTLMFSATFPEEIQRLAGEFLKSNYLF 504
Query: 477 VTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDK 536
V +G G A + Q ++ + + K +L +L +GD+ +VFV TKK AD +A L +
Sbjct: 505 VAVGQVGGACRDVQQTILQVGQYSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQ 564
Query: 537 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIE 596
T++HG + Q +RE +L FR + VLVAT VA RG+DI +V HVIN+D+P I+
Sbjct: 565 EKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTID 624
Query: 597 MYTHRIGRTGRAGKTGVATTFLTFH-DTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPG 655
Y HRIGRTGR G TG A +F D+ + L ++L + VP L + S + PG
Sbjct: 625 EYVHRIGRTGRCGNTGRAISFFDLESDSQLAQPLVKVLSDAQQDVPAWLEEIAFSTYGPG 684
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 156/427 (36%), Positives = 241/427 (56%)
Query: 222 LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAA 281
L T ++ +R I+ +G P+P+ N+ E ++ + R + P+ IQ
Sbjct: 122 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 181
Query: 282 IPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341
P+ L D++G+A+TGSGKT +++LP + +I+ P + +GP +V+APTRELAQ
Sbjct: 182 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPICLVLAPTRELAQ 238
Query: 342 QIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQ 401
Q+++ ++ +K I GG Q + +G E+ IATPGRLID LE L +
Sbjct: 239 QVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRR 298
Query: 402 CNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPP 461
Y+VLDEADRM+DMGFEPQ+ ++D ++P+ R T M+SAT P
Sbjct: 299 TTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPD------------RQTLMWSATWPK 341
Query: 462 AVERLARKYLRNPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL-GDKT--A 517
V +LA +L++ + + IG A I Q V + + EK +L RL++E+ +K
Sbjct: 342 EVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKT 401
Query: 518 IVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRG 577
IVFV TK+ D + + + + G+ +HG KSQ++R+ L F+ + +L+ATDVA RG
Sbjct: 402 IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRG 461
Query: 578 IDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN 637
+D+ DV VINYD P + E Y HRIGRT R+ KTG A TF T ++ DL +L ++N
Sbjct: 462 LDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREAN 521
Query: 638 SPVPPEL 644
+ P+L
Sbjct: 522 QAINPKL 528
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 156/427 (36%), Positives = 241/427 (56%)
Query: 222 LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAA 281
L T ++ +R I+ +G P+P+ N+ E ++ + R + P+ IQ
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 282 IPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341
P+ L D++G+A+TGSGKT +++LP + +I+ P + +GP +V+APTRELAQ
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPICLVLAPTRELAQ 181
Query: 342 QIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQ 401
Q+++ ++ +K I GG Q + +G E+ IATPGRLID LE L +
Sbjct: 182 QVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRR 241
Query: 402 CNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPP 461
Y+VLDEADRM+DMGFEPQ+ ++D ++P+ R T M+SAT P
Sbjct: 242 TTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPD------------RQTLMWSATWPK 284
Query: 462 AVERLARKYLRNPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL-GDKT--A 517
V +LA +L++ + + IG A I Q V + + EK +L RL++E+ +K
Sbjct: 285 EVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKT 344
Query: 518 IVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRG 577
IVFV TK+ D + + + + G+ +HG KSQ++R+ L F+ + +L+ATDVA RG
Sbjct: 345 IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRG 404
Query: 578 IDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN 637
+D+ DV VINYD P + E Y HRIGRT R+ KTG A TF T ++ DL +L ++N
Sbjct: 405 LDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREAN 464
Query: 638 SPVPPEL 644
+ P+L
Sbjct: 465 QAINPKL 471
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 156/427 (36%), Positives = 241/427 (56%)
Query: 222 LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAA 281
L T ++ +R I+ +G P+P+ N+ E ++ + R + P+ IQ
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 282 IPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341
P+ L D++G+A+TGSGKT +++LP + +I+ P + +GP +V+APTRELAQ
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPICLVLAPTRELAQ 181
Query: 342 QIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQ 401
Q+++ ++ +K I GG Q + +G E+ IATPGRLID LE L +
Sbjct: 182 QVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRR 241
Query: 402 CNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPP 461
Y+VLDEADRM+DMGFEPQ+ ++D ++P+ R T M+SAT P
Sbjct: 242 TTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPD------------RQTLMWSATWPK 284
Query: 462 AVERLARKYLRNPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL-GDKT--A 517
V +LA +L++ + + IG A I Q V + + EK +L RL++E+ +K
Sbjct: 285 EVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKT 344
Query: 518 IVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRG 577
IVFV TK+ D + + + + G+ +HG KSQ++R+ L F+ + +L+ATDVA RG
Sbjct: 345 IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRG 404
Query: 578 IDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN 637
+D+ DV VINYD P + E Y HRIGRT R+ KTG A TF T ++ DL +L ++N
Sbjct: 405 LDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREAN 464
Query: 638 SPVPPEL 644
+ P+L
Sbjct: 465 QAINPKL 471
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 156/427 (36%), Positives = 241/427 (56%)
Query: 222 LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAA 281
L T ++ +R I+ +G P+P+ N+ E ++ + R + P+ IQ
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 282 IPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341
P+ L D++G+A+TGSGKT +++LP + +I+ P + +GP +V+APTRELAQ
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPICLVLAPTRELAQ 181
Query: 342 QIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQ 401
Q+++ ++ +K I GG Q + +G E+ IATPGRLID LE L +
Sbjct: 182 QVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRR 241
Query: 402 CNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPP 461
Y+VLDEADRM+DMGFEPQ+ ++D ++P+ R T M+SAT P
Sbjct: 242 TTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPD------------RQTLMWSATWPK 284
Query: 462 AVERLARKYLRNPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL-GDKT--A 517
V +LA +L++ + + IG A I Q V + + EK +L RL++E+ +K
Sbjct: 285 EVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKT 344
Query: 518 IVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRG 577
IVFV TK+ D + + + + G+ +HG KSQ++R+ L F+ + +L+ATDVA RG
Sbjct: 345 IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRG 404
Query: 578 IDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN 637
+D+ DV VINYD P + E Y HRIGRT R+ KTG A TF T ++ DL +L ++N
Sbjct: 405 LDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREAN 464
Query: 638 SPVPPEL 644
+ P+L
Sbjct: 465 QAINPKL 471
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
Identities = 162/435 (37%), Positives = 236/435 (54%)
Query: 239 ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETG 298
+ G P + + E L L + + GY +P+Q +IP+ L RD++ A+TG
Sbjct: 249 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 308
Query: 299 SGKTAAFVLPMLTYISRLP-PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIK 357
SGKTAAF+LP+L ++ R S E + P +++APTREL QI E KF+ ++
Sbjct: 309 SGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 368
Query: 358 VVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG 417
V I GG +I QGC ++ ATPGRL+D + + L Q Y+VLDEADRM+DMG
Sbjct: 369 AVVIYGGTQFGHSVRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMG 428
Query: 418 FEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVV- 476
F P++ ++ P P E R T +FSAT P ++RLA +L++ +
Sbjct: 429 FGPEMKKLISC-PGM---PSKEQ---------RQTLLFSATFPEEIQRLAGDFLKSSYLF 475
Query: 477 VTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDK 536
V +G G A + Q ++ + + K +L +L +GD+ +VFV TKK AD +A L +
Sbjct: 476 VAVGQVGGACRDVQQTILQVGQYSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQ 535
Query: 537 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIE 596
T++HG + Q +RE +L FR + VLVAT VA RG+DI +V HVIN+D+P I+
Sbjct: 536 EKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTID 595
Query: 597 MYTHRIGRTGRAGKTGVATTFL-TFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPG 655
Y HRIGRTGR G TG A +F T D + L ++L + VP L + S + P
Sbjct: 596 EYVHRIGRTGRCGNTGRAISFFDTDSDNHLAQPLVKVLSDAQQDVPAWLEEIAFSTYVPP 655
Query: 656 TIPDRPPRRNDTVFA 670
+ R VFA
Sbjct: 656 SFSSST--RGGAVFA 668
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
Identities = 156/427 (36%), Positives = 241/427 (56%)
Query: 222 LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAA 281
L T ++ +R I+ +G P+P+ N+ E ++ + R + P+ IQ
Sbjct: 65 LARRTAQEVDTYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 282 IPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341
P+ L D++G+A+TGSGKT +++LP + +I+ P + +GP +V+APTRELAQ
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPICLVLAPTRELAQ 181
Query: 342 QIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQ 401
Q+++ ++ +K I GG Q + +G E+ IATPGRLID LE L +
Sbjct: 182 QVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRR 241
Query: 402 CNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPP 461
Y+VLDEADRM+DMGFEPQ+ ++D ++P+ R T M+SAT P
Sbjct: 242 TTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPD------------RQTLMWSATWPK 284
Query: 462 AVERLARKYLRNPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL-GDKT--A 517
V +LA +L++ + + IG A I Q V + + EK +L RL++E+ +K
Sbjct: 285 EVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKT 344
Query: 518 IVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRG 577
IVFV TK+ D + + + + G+ +HG KSQ++R+ L F+ + +L+ATDVA RG
Sbjct: 345 IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRG 404
Query: 578 IDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN 637
+D+ DV VINYD P + E Y HRIGRT R+ KTG A TF T ++ DL +L ++N
Sbjct: 405 LDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREAN 464
Query: 638 SPVPPEL 644
+ P+L
Sbjct: 465 QAINPKL 471
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
Identities = 156/427 (36%), Positives = 241/427 (56%)
Query: 222 LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAA 281
L T ++ +R I+ +G P+P+ N+ E ++ + R + P+ IQ
Sbjct: 65 LARRTAQEVDTYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 282 IPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341
P+ L D++G+A+TGSGKT +++LP + +I+ P + +GP +V+APTRELAQ
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPICLVLAPTRELAQ 181
Query: 342 QIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQ 401
Q+++ ++ +K I GG Q + +G E+ IATPGRLID LE L +
Sbjct: 182 QVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRR 241
Query: 402 CNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPP 461
Y+VLDEADRM+DMGFEPQ+ ++D ++P+ R T M+SAT P
Sbjct: 242 TTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPD------------RQTLMWSATWPK 284
Query: 462 AVERLARKYLRNPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL-GDKT--A 517
V +LA +L++ + + IG A I Q V + + EK +L RL++E+ +K
Sbjct: 285 EVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKT 344
Query: 518 IVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRG 577
IVFV TK+ D + + + + G+ +HG KSQ++R+ L F+ + +L+ATDVA RG
Sbjct: 345 IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRG 404
Query: 578 IDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN 637
+D+ DV VINYD P + E Y HRIGRT R+ KTG A TF T ++ DL +L ++N
Sbjct: 405 LDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREAN 464
Query: 638 SPVPPEL 644
+ P+L
Sbjct: 465 QAINPKL 471
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 159/420 (37%), Positives = 231/420 (55%)
Query: 239 ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETG 298
+ G P + + E L L + + GY +P+Q +IP+ L RD++ A+TG
Sbjct: 274 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 333
Query: 299 SGKTAAFVLPMLTYISRLP-PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIK 357
SGKTAAF+LP+L ++ S E + P +++APTREL QI E KF+ ++
Sbjct: 334 SGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVR 393
Query: 358 VVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG 417
V I GG + +I QGC ++ ATPGRL+D + + L Q Y+VLDEADRM+DMG
Sbjct: 394 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMG 453
Query: 418 FEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR-NPVV 476
F P++ ++ P P E R T MFSAT P ++RLA ++L+ N +
Sbjct: 454 FGPEMKKLISC-PGM---PSKEQ---------RQTLMFSATFPEEIQRLAAEFLKSNYLF 500
Query: 477 VTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDK 536
V +G G A + Q + + + K +L +L +GD+ +VFV TKK AD +A L +
Sbjct: 501 VAVGQVGGACRDVQQADLQVGQYSKREKLLEILRNIGDERTMVFVETKKKADFIATFLCQ 560
Query: 537 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIE 596
T++HG + Q +RE +L FR + VLVAT VA RG+DI +V HVIN+D+P I+
Sbjct: 561 EKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTID 620
Query: 597 MYTHRIGRTGRAGKTGVATTFLTFH-DTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPG 655
Y HRIGRTGR G TG A +F D + L ++L + VP L + S + PG
Sbjct: 621 EYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFSTYIPG 680
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 161/430 (37%), Positives = 247/430 (57%)
Query: 235 EDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
+D + GS +P + + E L L + V + GY +PIQ +IP+ + RD++
Sbjct: 270 DDIVVEVSGSDVPPAILTFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMAC 329
Query: 295 AETGSGKTAAFVLPMLTYIS-RLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHY 353
A+TGSGKTAAF+LP+L ++ + S + P A+++APTREL QI + KF++
Sbjct: 330 AQTGSGKTAAFLLPILAHLMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLDARKFSYG 389
Query: 354 LGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRM 413
++ V I GG + +I +GC ++ ATPGRL+D + + L + Y+VLDEADRM
Sbjct: 390 TCVRPVVIYGGTQMFHSLKQISEGCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRM 449
Query: 414 IDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR- 472
+DMGF + +L SS + P E+ R T MFSAT P +++ LAR+ L+
Sbjct: 450 LDMGFREDIENLLK---SSGM-PSKEE---------RQTLMFSATFPSSIQSLAREILKP 496
Query: 473 NPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAK 532
+ + V +G G A + Q V+ + E K +L +L E+G + +VFV TKK AD +A
Sbjct: 497 DYLFVVVGQVGGACSDVEQMVIEVDEFGKKDKLMEILQEIGSERTMVFVKTKKKADFIAT 556
Query: 533 NLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMP 592
L + T++HG + Q++RE +L FRT + V+VAT VA RG+DI +V++VIN+D+P
Sbjct: 557 FLCQEKVPSTSIHGDREQKERETALRDFRTGQCPVIVATSVAARGLDIENVSYVINFDIP 616
Query: 593 GNIEMYTHRIGRTGRAGKTGVATTFLTFHDTD---VFYDLKQMLIQSNSPVPP---ELA- 645
+I+ Y HRIGRTGR G TG A +F D + L ++L ++ VP E+A
Sbjct: 617 DDIDEYVHRIGRTGRCGNTGRAISFFDKRGDDEQRIARSLVKVLSDAHQEVPAWLEEVAF 676
Query: 646 -KHEASKFKP 654
H +S + P
Sbjct: 677 SAHGSSAYNP 686
>UNIPROTKB|E2RMU5 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0007283
GO:GO:0003676 GO:GO:0030317 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:RDAGESN GO:GO:0000237 EMBL:AAEX03001439
Ensembl:ENSCAFT00000011062 Uniprot:E2RMU5
Length = 728
Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
Identities = 159/420 (37%), Positives = 232/420 (55%)
Query: 239 ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETG 298
+ G P + + E L L + + GY +P+Q +IP+ L RD++ A+TG
Sbjct: 277 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 336
Query: 299 SGKTAAFVLPMLTYISRLP-PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIK 357
SGKTAAF+LP+L ++ S E + P +++APTREL QI E KF+ ++
Sbjct: 337 SGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 396
Query: 358 VVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG 417
V I GG + +I QGC ++ ATPGRL+D + + L Q Y+VLDEADRM+DMG
Sbjct: 397 AVVIYGGTQLGYSIRQIVQGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMG 456
Query: 418 FEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR-NPVV 476
F P++ ++ P P E R T MFSAT P ++RLA ++L+ N +
Sbjct: 457 FGPEMKKLISC-PGM---PSKEQ---------RQTLMFSATFPEEIQRLAGEFLKSNYLF 503
Query: 477 VTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDK 536
V +G G A + Q ++ + + K +L +L +GD+ +VFV TKK AD +A L +
Sbjct: 504 VAVGQVGGACRDVQQTILQVGQYSKREKLVEILRSIGDERTMVFVETKKKADFIATFLCQ 563
Query: 537 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIE 596
T++HG + Q +RE +L FR + VLVAT VA RG+DI +V HVIN+D+P I+
Sbjct: 564 EKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTID 623
Query: 597 MYTHRIGRTGRAGKTGVATTFLTFH-DTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPG 655
Y HRIGRTGR G TG A +F D + L ++L + VP L + S + PG
Sbjct: 624 EYVHRIGRTGRCGNTGRAISFFDPESDNHLAQPLVKVLSDAQQDVPAWLEEIAFSTYVPG 683
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
Identities = 156/427 (36%), Positives = 240/427 (56%)
Query: 222 LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAA 281
L T ++ +R I+ +G P+P+ N+ E ++ + R + P+ IQ
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 282 IPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341
P+ L D++G+A+TGSGKT +++LP + +I+ P + +GP +V+APTRELAQ
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPICLVLAPTRELAQ 181
Query: 342 QIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQ 401
Q+++ ++ +K I GG Q + +G E+ IATPGRLID LE L +
Sbjct: 182 QVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRR 241
Query: 402 CNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPP 461
Y+VLDEADRM+DMGFEPQ+ ++D ++P+ R T M+SAT P
Sbjct: 242 TTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPD------------RQTLMWSATWPK 284
Query: 462 AVERLARKYLRNPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL-GDKT--A 517
V +LA +L++ + + IG A I Q V + + EK +L RL++E+ +K
Sbjct: 285 EVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKT 344
Query: 518 IVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRG 577
IVFV TK+ D + + + + G+ +HG KSQ++R L F+ + +L+ATDVA RG
Sbjct: 345 IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAPILIATDVASRG 404
Query: 578 IDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN 637
+D+ DV VINYD P + E Y HRIGRT R+ KTG A TF T ++ DL +L ++N
Sbjct: 405 LDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREAN 464
Query: 638 SPVPPEL 644
+ P+L
Sbjct: 465 QAINPKL 471
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 156/427 (36%), Positives = 240/427 (56%)
Query: 222 LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAA 281
L T ++ +R I+ +G P+P+ N+ E ++ + R + P+ IQ
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 282 IPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341
P+ L D++G+A+TGSGKT +++LP + +I+ P + +GP +V+APTRELAQ
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPICLVLAPTRELAQ 181
Query: 342 QIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQ 401
Q+++ ++ +K I GG Q + +G E IATPGRLID LE L +
Sbjct: 182 QVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVENCIATPGRLIDFLECGKTNLRR 241
Query: 402 CNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPP 461
Y+VLDEADRM+DMGFEPQ+ ++D ++P+ R T M+SAT P
Sbjct: 242 TTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPD------------RQTLMWSATWPK 284
Query: 462 AVERLARKYLRNPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL-GDKT--A 517
V +LA +L++ + + IG A I Q V + + EK +L RL++E+ +K
Sbjct: 285 EVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKT 344
Query: 518 IVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRG 577
IVFV TK+ D + + + + G+ +HG KSQ++R+ L F+ + +L+ATDVA RG
Sbjct: 345 IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRG 404
Query: 578 IDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN 637
+D+ DV VINYD P + E Y HRIGRT R+ KTG A TF T ++ DL +L ++N
Sbjct: 405 LDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREAN 464
Query: 638 SPVPPEL 644
+ P+L
Sbjct: 465 QAINPKL 471
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 171/448 (38%), Positives = 247/448 (55%)
Query: 233 FREDFNISYKGSKIPRPMRNWAEG-KLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDV 291
FRE+ + KIP P+ ++ + ++ + + G++ PSPIQ PL L +D
Sbjct: 70 FREESTV-----KIPPPVNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDC 124
Query: 292 IGIAETGSGKTAAFVLPMLTYISRLPPISEENEAE---GPYAVVMAPTRELAQQIEEETV 348
IG+++TGSGKT AF+LP L +I E+N+ E P+ +V++PTRELAQQIE E
Sbjct: 125 IGVSQTGSGKTLAFLLPALLHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVK 184
Query: 349 KFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLD 408
K++ Y G K V + GG S EQ R G E+VIATPGRL D L YVVLD
Sbjct: 185 KYS-YNGYKSVCLYGGGSRPEQVEACRGGVEIVIATPGRLTDLSNDGVISLASVTYVVLD 243
Query: 409 EADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLAR 468
EADRM+DMGFE + +L ++P+ R + SAT P V +L
Sbjct: 244 EADRMLDMGFEVAIRRIL-----FEIRPD------------RLVALTSATWPEGVRKLTD 286
Query: 469 KYLRNPVVVTIGTAGKAT-ELISQHVVMMKESEKFSRLQRLLDEL----GDK-TAIVFVN 522
KY + V+ G+ + + ++Q + +F R+ +++ L G I+FV
Sbjct: 287 KYTKEAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEIVNFLTAAHGQNYKMIIFVK 346
Query: 523 TKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPD 582
+K AD ++ + G LHGG+SQ RE+SL R+ +LVATD+A RGID+PD
Sbjct: 347 SKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSGEVQILVATDLASRGIDVPD 406
Query: 583 VAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPP 642
+ HV+NYD P +IE Y HR+GRTGRAG+ G A +FL ++D F L Q+L +S VP
Sbjct: 407 ITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLWWNDRSNFEGLIQILEKSEQEVPD 466
Query: 643 ELAKHEASKFK----PGTIPDRPPRRND 666
+L + +A K++ G RP RN+
Sbjct: 467 QL-RRDAEKYRLKCQSGRDGPRPSFRNN 493
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 367 (134.2 bits), Expect = 3.8e-66, Sum P(2) = 3.8e-66
Identities = 82/170 (48%), Positives = 104/170 (61%)
Query: 450 RTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRL-QRL 508
R T FSATMP AVE LA +LRNP V++ I Q V +++ EK S L +++
Sbjct: 186 RQTLFFSATMPKAVESLAATFLRNPAEVSVAPPATTAGRIEQRVCFVEQPEKASLLIEKI 245
Query: 509 LD-ELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNV 567
D EL ++AIVF TK AD V K L K +HG KSQ QRE +LE F+ R +
Sbjct: 246 RDPEL--RSAIVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPI 303
Query: 568 LVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 617
LVATD+A RGI + + HVINYD+P E + HRIGRT RAG +GVA +F
Sbjct: 304 LVATDIAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISF 353
Score = 331 (121.6 bits), Expect = 3.8e-66, Sum P(2) = 3.8e-66
Identities = 70/174 (40%), Positives = 108/174 (62%)
Query: 258 LTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 317
LT +L ++ + GY P+PIQ AIPL +Q RD++G+A+TG+GKT AF P+L +SR
Sbjct: 14 LTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDRLSRN- 72
Query: 318 PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 377
+ G +V+APTRELA QI + L ++VV + GG I Q ++ +G
Sbjct: 73 --ASPAPVRGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQLERG 130
Query: 378 CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 431
+++ATPGRLID +E+R L++ ++LDEAD+M+D+GF + + +PS
Sbjct: 131 AHILVATPGRLIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPS 184
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 369 (135.0 bits), Expect = 4.5e-66, Sum P(2) = 4.5e-66
Identities = 82/178 (46%), Positives = 119/178 (66%)
Query: 258 LTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 317
L+P++LRAV GY+ P+PIQ AIP L+ RD++ A+TG+GKTA F LP+L ++
Sbjct: 8 LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL---- 63
Query: 318 PISEENEAEG--PY-AVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRI 374
I+ + A+G P A+++ PTRELA QI E ++ YL I+ + + GG SI Q ++
Sbjct: 64 -ITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 375 RQGCEVVIATPGRLIDCLERRYAV-LNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 431
R G +V++ATPGRL+D LE + AV L+Q +VLDEADRM+DMGF + VL +P+
Sbjct: 123 RGGVDVLVATPGRLLD-LEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPA 179
Score = 328 (120.5 bits), Expect = 4.5e-66, Sum P(2) = 4.5e-66
Identities = 67/184 (36%), Positives = 107/184 (58%)
Query: 450 RTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLL 509
R +FSAT ++ LA K L NP+ + + A++ ++QHV + + K L ++
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 510 DELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLV 569
+ + +VF TK A+ +A+ L+K G R +HG KSQ R +L F++ VLV
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300
Query: 570 ATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDL 629
ATD+A RG+DI ++ HV+NY++P E Y HRIGRTGRA TG A + + + + D+
Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360
Query: 630 KQML 633
+++L
Sbjct: 361 EKLL 364
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
Identities = 158/419 (37%), Positives = 231/419 (55%)
Query: 239 ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETG 298
+ G P + + E L L + + GY +P+Q +IP+ L RD++ A+TG
Sbjct: 261 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 320
Query: 299 SGKTAAFVLPMLTYISRLP-PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIK 357
SGKTAAF+LP+L ++ R S E + P +++APTREL QI E KF+ ++
Sbjct: 321 SGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 380
Query: 358 VVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG 417
V I GG +I QGC ++ ATPGRL+D + + L Q Y+VLDEADRM+DMG
Sbjct: 381 AVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMG 440
Query: 418 FEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR-NPVV 476
F P++ ++ P P E R T +FSAT P ++RLA ++L+ N +
Sbjct: 441 FGPEMKKLISC-PGM---PSKEQ---------RQTLLFSATFPEEIQRLAGEFLKSNYLF 487
Query: 477 VTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDK 536
V +G G A + Q ++ + K +L +L +GD+ +VFV TKK AD +A L +
Sbjct: 488 VAVGQVGGACRDVQQSILQVGPVFKKRKLVEILRNIGDERPMVFVETKKKADFIATFLCQ 547
Query: 537 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIE 596
T++HG + Q +RE +L FR + VLVAT VA RG+DI +V HVIN+++P I+
Sbjct: 548 EKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTID 607
Query: 597 MYTHRIGRTGRAGKTGVATTFL-TFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKP 654
Y HRIGRTGR G TG A +F T D + L ++L + VP L + S + P
Sbjct: 608 EYVHRIGRTGRCGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWLEEIAFSSYAP 666
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
Identities = 158/419 (37%), Positives = 231/419 (55%)
Query: 239 ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETG 298
+ G P + + E L L + + GY +P+Q +IP+ L RD++ A+TG
Sbjct: 261 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 320
Query: 299 SGKTAAFVLPMLTYISRLP-PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIK 357
SGKTAAF+LP+L ++ R S E + P +++APTREL QI E KF+ ++
Sbjct: 321 SGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 380
Query: 358 VVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG 417
V I GG +I QGC ++ ATPGRL+D + + L Q Y+VLDEADRM+DMG
Sbjct: 381 AVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMG 440
Query: 418 FEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR-NPVV 476
F P++ ++ P P E R T +FSAT P ++RLA ++L+ N +
Sbjct: 441 FGPEMKKLISC-PGM---PSKEQ---------RQTLLFSATFPEEIQRLAGEFLKSNYLF 487
Query: 477 VTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDK 536
V +G G A + Q ++ + K +L +L +GD+ +VFV TKK AD +A L +
Sbjct: 488 VAVGQVGGACRDVQQSILQVGPVFKKRKLVEILRNIGDERPMVFVETKKKADFIATFLCQ 547
Query: 537 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIE 596
T++HG + Q +RE +L FR + VLVAT VA RG+DI +V HVIN+++P I+
Sbjct: 548 EKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTID 607
Query: 597 MYTHRIGRTGRAGKTGVATTFL-TFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKP 654
Y HRIGRTGR G TG A +F T D + L ++L + VP L + S + P
Sbjct: 608 EYVHRIGRTGRCGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWLEEIAFSSYAP 666
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 350 (128.3 bits), Expect = 2.7e-65, Sum P(2) = 2.7e-65
Identities = 77/203 (37%), Positives = 115/203 (56%)
Query: 452 TYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDE 511
T +FSAT+P ++ + +K+L V + K I Q + E+EK L +L+
Sbjct: 177 TLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSILNS 236
Query: 512 LGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT 571
AIVF TKK D V + L+ GY LHG SQ +R +++ F+ + +LVAT
Sbjct: 237 ELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVAT 296
Query: 572 DVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQ 631
DVA RG+DIPDV+HVIN+D+P N E Y HRIGRTGRAG+ G A T + + + + +++
Sbjct: 297 DVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIEE 356
Query: 632 MLIQS-NSPVPPELAKHEASKFK 653
+ + + PE E ++FK
Sbjct: 357 AINKRLKREILPEPVDLEEARFK 379
Score = 342 (125.4 bits), Expect = 2.7e-65, Sum P(2) = 2.7e-65
Identities = 72/174 (41%), Positives = 113/174 (64%)
Query: 256 GKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISR 315
G +TP LL+AV +G++ P+PIQ AIPL L+ +++G A TG+GKTAA++LP+L I R
Sbjct: 8 GLITP-LLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQR 66
Query: 316 LPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIR 375
+A+ +++ PTRELA Q+ +E K YL ++ +++ GGQ+IE Q +R
Sbjct: 67 ------GKKAQ---VLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLR 117
Query: 376 QGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAM 429
QG EV++ TPGR++D + R+ + V+LDEAD M+DMGF + +L+ +
Sbjct: 118 QGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTL 171
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 350 (128.3 bits), Expect = 2.7e-65, Sum P(2) = 2.7e-65
Identities = 77/203 (37%), Positives = 115/203 (56%)
Query: 452 TYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDE 511
T +FSAT+P ++ + +K+L V + K I Q + E+EK L +L+
Sbjct: 177 TLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSILNS 236
Query: 512 LGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT 571
AIVF TKK D V + L+ GY LHG SQ +R +++ F+ + +LVAT
Sbjct: 237 ELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVAT 296
Query: 572 DVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQ 631
DVA RG+DIPDV+HVIN+D+P N E Y HRIGRTGRAG+ G A T + + + + +++
Sbjct: 297 DVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIEE 356
Query: 632 MLIQS-NSPVPPELAKHEASKFK 653
+ + + PE E ++FK
Sbjct: 357 AINKRLKREILPEPVDLEEARFK 379
Score = 342 (125.4 bits), Expect = 2.7e-65, Sum P(2) = 2.7e-65
Identities = 72/174 (41%), Positives = 113/174 (64%)
Query: 256 GKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISR 315
G +TP LL+AV +G++ P+PIQ AIPL L+ +++G A TG+GKTAA++LP+L I R
Sbjct: 8 GLITP-LLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQR 66
Query: 316 LPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIR 375
+A+ +++ PTRELA Q+ +E K YL ++ +++ GGQ+IE Q +R
Sbjct: 67 ------GKKAQ---VLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLR 117
Query: 376 QGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAM 429
QG EV++ TPGR++D + R+ + V+LDEAD M+DMGF + +L+ +
Sbjct: 118 QGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTL 171
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 157/429 (36%), Positives = 242/429 (56%)
Query: 221 KLEEMTERDWRIFREDFNISYKGSK-IPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQM 279
++ +T + R I+ +G + P+P+ + + ++ A+ + P+PIQ
Sbjct: 59 EVARLTPYEVEELRRKKEITIRGMEGCPKPVFAFHQCSFPQYVMDALMDQNFTEPTPIQC 118
Query: 280 AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339
PL L RD++GIA+TGSGKT A++LP + +I+ P + +GP +V+APTREL
Sbjct: 119 QGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER---GDGPICLVLAPTREL 175
Query: 340 AQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVL 399
AQQ+++ + +K I GG Q + +G E+ IATPGRLID LE L
Sbjct: 176 AQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNL 235
Query: 400 NQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATM 459
+C Y+VLDEADRM+DMGFEPQ+ ++D ++P+ R T M+SAT
Sbjct: 236 RRCTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPD------------RQTLMWSATW 278
Query: 460 PPAVERLARKYLRNPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL-GDKT- 516
P V +LA +L++ V + +G A I Q V + ESEK +L +L++E+ +K
Sbjct: 279 PKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKEN 338
Query: 517 -AIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAG 575
I+FV TK+ D + + + + G+ +HG KSQ +R+ L FR+ + +L+ATDVA
Sbjct: 339 KTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVAS 398
Query: 576 RGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQ 635
RG+D+ DV VINYD P + E Y HRIGRT R+ G A TF T + +L ++L +
Sbjct: 399 RGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEE 458
Query: 636 SNSPVPPEL 644
+N + P+L
Sbjct: 459 ANQAINPKL 467
>GENEDB_PFALCIPARUM|PFE0430w [details] [associations]
symbol:PFE0430w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 671 (241.3 bits), Expect = 1.0e-64, P = 1.0e-64
Identities = 151/435 (34%), Positives = 250/435 (57%)
Query: 204 DLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDF-NISYKGSKIPRPMRNWAEGKLTPEL 262
D D ++ + + K++ M + D +FR++ NI +G PRP++ + + L ++
Sbjct: 675 DEIDYIPIKKNIYVQVKEITNMKDSDVDMFRKNNGNIIVRGKNCPRPVQYFYQCGLPSKI 734
Query: 263 LRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEE 322
L+ +E+ +K IQM IP + RDVI IAETGSGKT +++ P++ ++ P+
Sbjct: 735 LQILEKKNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHVLHQEPLRNN 794
Query: 323 NEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVI 382
+GP ++++ PTREL+ Q++ E + + I+++++ GG +I Q +++G E+++
Sbjct: 795 ---DGPISIILTPTRELSIQVKNEAKIYCKAVNIEILAVYGGSNIARQLKVLKKGVEILV 851
Query: 383 ATPGRLIDCL---ERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE 439
TPGR+ID L + LN+ ++VVLDEADR++D+GFE Q+ +L N + + +
Sbjct: 852 GTPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNIL-----RNCRKDKQ 906
Query: 440 DEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKES 499
T M SAT P ++ +A+K L P+ + +G GK I Q V +++ES
Sbjct: 907 ------------TAMISATFPNYIQNMAKKLLYKPIEIIVGEKGKTNNNIYQFVEIIEES 954
Query: 500 EKFSRLQRLLDE-LGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLE 558
+K RL +LL E + ++FVN + AD++ L K Y + LHGG+ Q R+ +LE
Sbjct: 955 KKVFRLLKLLGEWIKYGLVLIFVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLE 1014
Query: 559 GFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFL 618
F+ + VL+AT V RGIDI ++ VINY P +IE Y HRIGRTGR+ G A TF+
Sbjct: 1015 KFKKEENKVLIATSVMARGIDIKNIILVINYQCPDHIEDYIHRIGRTGRSNNIGYAYTFI 1074
Query: 619 TFHDTDVFYDLKQML 633
++ YD+ +L
Sbjct: 1075 LPNEYTKAYDIYNLL 1089
>UNIPROTKB|Q8I416 [details] [associations]
symbol:PFE0430w "ATP-dependent RNA Helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 671 (241.3 bits), Expect = 1.0e-64, P = 1.0e-64
Identities = 151/435 (34%), Positives = 250/435 (57%)
Query: 204 DLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDF-NISYKGSKIPRPMRNWAEGKLTPEL 262
D D ++ + + K++ M + D +FR++ NI +G PRP++ + + L ++
Sbjct: 675 DEIDYIPIKKNIYVQVKEITNMKDSDVDMFRKNNGNIIVRGKNCPRPVQYFYQCGLPSKI 734
Query: 263 LRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEE 322
L+ +E+ +K IQM IP + RDVI IAETGSGKT +++ P++ ++ P+
Sbjct: 735 LQILEKKNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHVLHQEPLRNN 794
Query: 323 NEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVI 382
+GP ++++ PTREL+ Q++ E + + I+++++ GG +I Q +++G E+++
Sbjct: 795 ---DGPISIILTPTRELSIQVKNEAKIYCKAVNIEILAVYGGSNIARQLKVLKKGVEILV 851
Query: 383 ATPGRLIDCL---ERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE 439
TPGR+ID L + LN+ ++VVLDEADR++D+GFE Q+ +L N + + +
Sbjct: 852 GTPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNIL-----RNCRKDKQ 906
Query: 440 DEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKES 499
T M SAT P ++ +A+K L P+ + +G GK I Q V +++ES
Sbjct: 907 ------------TAMISATFPNYIQNMAKKLLYKPIEIIVGEKGKTNNNIYQFVEIIEES 954
Query: 500 EKFSRLQRLLDE-LGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLE 558
+K RL +LL E + ++FVN + AD++ L K Y + LHGG+ Q R+ +LE
Sbjct: 955 KKVFRLLKLLGEWIKYGLVLIFVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLE 1014
Query: 559 GFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFL 618
F+ + VL+AT V RGIDI ++ VINY P +IE Y HRIGRTGR+ G A TF+
Sbjct: 1015 KFKKEENKVLIATSVMARGIDIKNIILVINYQCPDHIEDYIHRIGRTGRSNNIGYAYTFI 1074
Query: 619 TFHDTDVFYDLKQML 633
++ YD+ +L
Sbjct: 1075 LPNEYTKAYDIYNLL 1089
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 155/416 (37%), Positives = 234/416 (56%)
Query: 234 REDFNISYKGSKI-PRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVI 292
R I+ +G + P+P+ + ++ + + P+PIQ PL L RD++
Sbjct: 74 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 133
Query: 293 GIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352
GIA+TGSGKT A++LP + +I+ P + +GP +V+APTRELAQQ+++ +
Sbjct: 134 GIAQTGSGKTLAYLLPAIVHINHQPYLER---GDGPICLVLAPTRELAQQVQQVADDYGK 190
Query: 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR 412
+K I GG Q + +G E+ IATPGRLID LE L +C Y+VLDEADR
Sbjct: 191 CSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADR 250
Query: 413 MIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR 472
M+DMGFEPQ+ ++D ++P+ R T M+SAT P V +LA +LR
Sbjct: 251 MLDMGFEPQIRKIVD-----QIRPD------------RQTLMWSATWPKEVRQLAEDFLR 293
Query: 473 NPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL-GDKT--AIVFVNTKKNAD 528
+ + +G A I Q V + ESEK +L +L++E+ +K I+FV TK+ D
Sbjct: 294 DYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCD 353
Query: 529 MVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN 588
+ + + + G+ +HG KSQ +R+ L FR+ + +L+ATDVA RG+D+ DV VIN
Sbjct: 354 DLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVIN 413
Query: 589 YDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPEL 644
YD P + E Y HRIGRT R+ G A TF T + +L ++L ++N + P+L
Sbjct: 414 YDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKL 469
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 155/416 (37%), Positives = 234/416 (56%)
Query: 234 REDFNISYKGSKI-PRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVI 292
R I+ +G + P+P+ + ++ + + P+PIQ PL L RD++
Sbjct: 74 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 133
Query: 293 GIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352
GIA+TGSGKT A++LP + +I+ P + +GP +V+APTRELAQQ+++ +
Sbjct: 134 GIAQTGSGKTLAYLLPAIVHINHQPYLER---GDGPICLVLAPTRELAQQVQQVADDYGK 190
Query: 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR 412
+K I GG Q + +G E+ IATPGRLID LE L +C Y+VLDEADR
Sbjct: 191 CSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADR 250
Query: 413 MIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR 472
M+DMGFEPQ+ ++D ++P+ R T M+SAT P V +LA +LR
Sbjct: 251 MLDMGFEPQIRKIVD-----QIRPD------------RQTLMWSATWPKEVRQLAEDFLR 293
Query: 473 NPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL-GDKT--AIVFVNTKKNAD 528
+ + +G A I Q V + ESEK +L +L++E+ +K I+FV TK+ D
Sbjct: 294 DYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCD 353
Query: 529 MVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN 588
+ + + + G+ +HG KSQ +R+ L FR+ + +L+ATDVA RG+D+ DV VIN
Sbjct: 354 DLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVIN 413
Query: 589 YDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPEL 644
YD P + E Y HRIGRT R+ G A TF T + +L ++L ++N + P+L
Sbjct: 414 YDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKL 469
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 155/416 (37%), Positives = 234/416 (56%)
Query: 234 REDFNISYKGSKI-PRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVI 292
R I+ +G + P+P+ + ++ + + P+PIQ PL L RD++
Sbjct: 155 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 214
Query: 293 GIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352
GIA+TGSGKT A++LP + +I+ P + +GP +V+APTRELAQQ+++ +
Sbjct: 215 GIAQTGSGKTLAYLLPAIVHINHQPYLER---GDGPICLVLAPTRELAQQVQQVADDYGK 271
Query: 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR 412
+K I GG Q + +G E+ IATPGRLID LE L +C Y+VLDEADR
Sbjct: 272 CSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADR 331
Query: 413 MIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR 472
M+DMGFEPQ+ ++D ++P+ R T M+SAT P V +LA +LR
Sbjct: 332 MLDMGFEPQIRKIVD-----QIRPD------------RQTLMWSATWPKEVRQLAEDFLR 374
Query: 473 NPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL-GDKT--AIVFVNTKKNAD 528
+ + +G A I Q V + ESEK +L +L++E+ +K I+FV TK+ D
Sbjct: 375 DYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCD 434
Query: 529 MVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN 588
+ + + + G+ +HG KSQ +R+ L FR+ + +L+ATDVA RG+D+ DV VIN
Sbjct: 435 DLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVIN 494
Query: 589 YDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPEL 644
YD P + E Y HRIGRT R+ G A TF T + +L ++L ++N + P+L
Sbjct: 495 YDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKL 550
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 155/416 (37%), Positives = 234/416 (56%)
Query: 234 REDFNISYKGSKI-PRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVI 292
R I+ +G + P+P+ + ++ + + P+PIQ PL L RD++
Sbjct: 153 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 212
Query: 293 GIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352
GIA+TGSGKT A++LP + +I+ P + +GP +V+APTRELAQQ+++ +
Sbjct: 213 GIAQTGSGKTLAYLLPAIVHINHQPYLER---GDGPICLVLAPTRELAQQVQQVADDYGK 269
Query: 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR 412
+K I GG Q + +G E+ IATPGRLID LE L +C Y+VLDEADR
Sbjct: 270 CSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADR 329
Query: 413 MIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR 472
M+DMGFEPQ+ ++D ++P+ R T M+SAT P V +LA +LR
Sbjct: 330 MLDMGFEPQIRKIVD-----QIRPD------------RQTLMWSATWPKEVRQLAEDFLR 372
Query: 473 NPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL-GDKT--AIVFVNTKKNAD 528
+ + +G A I Q V + ESEK +L +L++E+ +K I+FV TK+ D
Sbjct: 373 DYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCD 432
Query: 529 MVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN 588
+ + + + G+ +HG KSQ +R+ L FR+ + +L+ATDVA RG+D+ DV VIN
Sbjct: 433 DLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVIN 492
Query: 589 YDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPEL 644
YD P + E Y HRIGRT R+ G A TF T + +L ++L ++N + P+L
Sbjct: 493 YDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKL 548
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 155/416 (37%), Positives = 234/416 (56%)
Query: 234 REDFNISYKGSKI-PRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVI 292
R I+ +G + P+P+ + ++ + + P+PIQ PL L RD++
Sbjct: 153 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 212
Query: 293 GIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352
GIA+TGSGKT A++LP + +I+ P + +GP +V+APTRELAQQ+++ +
Sbjct: 213 GIAQTGSGKTLAYLLPAIVHINHQPYLER---GDGPICLVLAPTRELAQQVQQVADDYGK 269
Query: 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR 412
+K I GG Q + +G E+ IATPGRLID LE L +C Y+VLDEADR
Sbjct: 270 CSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADR 329
Query: 413 MIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR 472
M+DMGFEPQ+ ++D ++P+ R T M+SAT P V +LA +LR
Sbjct: 330 MLDMGFEPQIRKIVD-----QIRPD------------RQTLMWSATWPKEVRQLAEDFLR 372
Query: 473 NPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL-GDKT--AIVFVNTKKNAD 528
+ + +G A I Q V + ESEK +L +L++E+ +K I+FV TK+ D
Sbjct: 373 DYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCD 432
Query: 529 MVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN 588
+ + + + G+ +HG KSQ +R+ L FR+ + +L+ATDVA RG+D+ DV VIN
Sbjct: 433 DLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVIN 492
Query: 589 YDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPEL 644
YD P + E Y HRIGRT R+ G A TF T + +L ++L ++N + P+L
Sbjct: 493 YDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKL 548
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 155/416 (37%), Positives = 234/416 (56%)
Query: 234 REDFNISYKGSKI-PRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVI 292
R I+ +G + P+P+ + ++ + + P+PIQ PL L RD++
Sbjct: 155 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 214
Query: 293 GIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352
GIA+TGSGKT A++LP + +I+ P + +GP +V+APTRELAQQ+++ +
Sbjct: 215 GIAQTGSGKTLAYLLPAIVHINHQPYLER---GDGPICLVLAPTRELAQQVQQVADDYGK 271
Query: 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR 412
+K I GG Q + +G E+ IATPGRLID LE L +C Y+VLDEADR
Sbjct: 272 CSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADR 331
Query: 413 MIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR 472
M+DMGFEPQ+ ++D ++P+ R T M+SAT P V +LA +LR
Sbjct: 332 MLDMGFEPQIRKIVD-----QIRPD------------RQTLMWSATWPKEVRQLAEDFLR 374
Query: 473 NPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL-GDKT--AIVFVNTKKNAD 528
+ + +G A I Q V + ESEK +L +L++E+ +K I+FV TK+ D
Sbjct: 375 DYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCD 434
Query: 529 MVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN 588
+ + + + G+ +HG KSQ +R+ L FR+ + +L+ATDVA RG+D+ DV VIN
Sbjct: 435 DLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVIN 494
Query: 589 YDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPEL 644
YD P + E Y HRIGRT R+ G A TF T + +L ++L ++N + P+L
Sbjct: 495 YDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKL 550
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 155/416 (37%), Positives = 234/416 (56%)
Query: 234 REDFNISYKGSKI-PRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVI 292
R I+ +G + P+P+ + ++ + + P+PIQ PL L RD++
Sbjct: 74 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 133
Query: 293 GIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352
GIA+TGSGKT A++LP + +I+ P + +GP +V+APTRELAQQ+++ +
Sbjct: 134 GIAQTGSGKTLAYLLPAIVHINHQPYLER---GDGPICLVLAPTRELAQQVQQVADDYGK 190
Query: 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR 412
+K I GG Q + +G E+ IATPGRLID LE L +C Y+VLDEADR
Sbjct: 191 CSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADR 250
Query: 413 MIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR 472
M+DMGFEPQ+ ++D ++P+ R T M+SAT P V +LA +LR
Sbjct: 251 MLDMGFEPQIRKIVD-----QIRPD------------RQTLMWSATWPKEVRQLAEDFLR 293
Query: 473 NPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDEL-GDKT--AIVFVNTKKNAD 528
+ + +G A I Q V + ESEK +L +L++E+ +K I+FV TK+ D
Sbjct: 294 DYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCD 353
Query: 529 MVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN 588
+ + + + G+ +HG KSQ +R+ L FR+ + +L+ATDVA RG+D+ DV VIN
Sbjct: 354 DLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVIN 413
Query: 589 YDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPEL 644
YD P + E Y HRIGRT R+ G A TF T + +L ++L ++N + P+L
Sbjct: 414 YDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKL 469
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
Identities = 165/441 (37%), Positives = 239/441 (54%)
Query: 219 EKKLEEMTERDWRI----FREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNP 274
E++++E T+ D + +R+ N+ +G P P + + + + P + + + + G+ P
Sbjct: 76 EEEVKEETKEDIVLSPTEWRKKHNVLIEGKSQPNPFQKFTDYEF-PRMFQHIFQ-GFTAP 133
Query: 275 SPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMA 334
+ IQ + P+ L D++G+A TGSGKT AF+LP L I LP + P +VMA
Sbjct: 134 TVIQGQSWPIILGGNDLVGLAATGSGKTLAFLLPALLKIISLP--KRPSYGATPLVLVMA 191
Query: 335 PTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLER 394
PTRELAQQIEE I+ + GG +Q +R G ++VI TPGRL D L +
Sbjct: 192 PTRELAQQIEEVCKTSIRGTSIRQLCAYGGLGKIDQSRILRNGVDIVIGTPGRLNDLLRK 251
Query: 395 RYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYM 454
+ L+ Y+VLDEADRM+DMGF PQ+ ++D +P R T M
Sbjct: 252 HH--LSSVQYLVLDEADRMLDMGFMPQIESLIDQIPKE-----------------RQTLM 292
Query: 455 FSATMPPAVERLARKYLRNPVVVTIGTAGKATEL-ISQHVVMMKESEKFSRLQRLLDELG 513
FSAT P V+ LA K+L++P+ +T+G+ + ++QH+V + + + DE+
Sbjct: 293 FSATWPKEVKLLASKFLKDPIKITVGSQELTGSINVTQHIVNIDDLSDLQSDDLIYDEIN 352
Query: 514 D-------KTAIVFVNTKKNADMVAKNLD-KLGYRVTTLHGGKSQEQREISLEGFRTKRY 565
T IVF N K D L + + LH GK Q RE L+ FR R
Sbjct: 353 KILTADPTNTVIVFCNEKYKCDDFQHYLSTQKNVKSIVLHSGKDQRMRESGLKLFRDHRI 412
Query: 566 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDV 625
+L+ATDVA RG+DIP V V NY +PGNIE Y HRIGRTGRAGKTG A +++T T
Sbjct: 413 RILIATDVAARGLDIPSVKAVFNYRLPGNIEDYVHRIGRTGRAGKTGDAWSYVTTQ-TPN 471
Query: 626 FYDLKQMLIQSNSPVPPELAK 646
DL ++L ++N +P L K
Sbjct: 472 LRDLVKILQRTNQKIPDFLEK 492
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
Identities = 155/407 (38%), Positives = 229/407 (56%)
Query: 239 ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETG 298
+ G P P+ + E L + + + GY +P+Q +IP+ RD++ A+TG
Sbjct: 155 VEMSGLDPPAPLLAFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTG 214
Query: 299 SGKTAAFVLPMLTYISRLP-PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIK 357
SGKTAAF+LP++ + + S + + P +++APTREL QI E KF + I+
Sbjct: 215 SGKTAAFLLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYGTCIR 274
Query: 358 VVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG 417
V I GG +I QGC ++ ATPGRL+D +E+ L + Y+VLDEADRM+DMG
Sbjct: 275 PVVIYGGTQTGHSIRQIMQGCNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRMLDMG 334
Query: 418 FEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVV- 476
F G LD M PE ++ R T MFSAT P V+RLA ++L+ +
Sbjct: 335 F-----G-LD-MKKLISYPEMPSKDR------RQTLMFSATFPEEVQRLAGEFLKTDYIF 381
Query: 477 VTIG-TAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLD 535
+ IG T G ++ + Q+++ + K +L +L G + +VFV+TKK AD +A L
Sbjct: 382 LVIGNTCGACSD-VQQNILQVPRLSKRDKLIEILQSTGGERTMVFVDTKKKADYLAAFLC 440
Query: 536 KLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNI 595
+ T++HG + Q +REI+L FR+ + +LVAT VA RG+DI +V HVIN+D+P I
Sbjct: 441 QENLPSTSIHGDREQREREIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTI 500
Query: 596 EMYTHRIGRTGRAGKTGVATTFLTFH-DTDVFYDLKQMLIQSNSPVP 641
E Y HRIGRTGR G TG A +F D + L ++L ++ VP
Sbjct: 501 EDYVHRIGRTGRCGNTGKAVSFFDDQSDGHLVQSLLKVLSEAQQEVP 547
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 634 (228.2 bits), Expect = 6.7e-63, Sum P(2) = 6.7e-63
Identities = 135/323 (41%), Positives = 207/323 (64%)
Query: 324 EAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIA 383
+ +GP A+ +APTRELA QI ET+K++ Y +K + GG S ++Q ++ GCE+++A
Sbjct: 375 KGDGPIALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVA 434
Query: 384 TPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEEL 443
TPGRLID ++ + LN+ +Y+VLDEAD+M D GF PQV+ +++ +++P+
Sbjct: 435 TPGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVN-----HVRPD------ 483
Query: 444 DEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMK-ESEKF 502
R T +FSAT P VE AR L +P+ ++IG G A I+Q V ++K +S+K+
Sbjct: 484 ------RQTLLFSATFKPNVEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDKW 537
Query: 503 SRL-QRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFR 561
+ L +L L + ++FV+TK + ++ NL K G++ TLHG K+Q +R +++ F+
Sbjct: 538 NWLTNQLALLLSQGSVLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFK 597
Query: 562 TKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFH 621
+ N+L+ATDVA RG+DIP + +V+NYD +IE +THRIGRTGRAG TGVA T +T
Sbjct: 598 EGKINILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPK 657
Query: 622 DTDVFYDLKQMLIQSNSPVPPEL 644
D DL + L ++ VPPEL
Sbjct: 658 DIHFSVDLIKNLESASQFVPPEL 680
Score = 410 (149.4 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 81/206 (39%), Positives = 131/206 (63%)
Query: 222 LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAA 281
+ +TE R++ +I G+ + P+ ++ LL+A+ + + P+PIQ A
Sbjct: 276 IANLTEEQVFEIRKNLDIRMTGTDLINPVTSFGHYGFDDILLQAIAKQSIETPTPIQKQA 335
Query: 282 IPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341
IP+ L RD+I IA+TGSGKTA F+ P +++I P + + +GP A+ +APTRELA
Sbjct: 336 IPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYLEK---GDGPIALFLAPTRELAH 392
Query: 342 QIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQ 401
QI ET+K++ Y +K + GG S ++Q ++ GCE+++ATPGRLID ++ + LN+
Sbjct: 393 QIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLIDMIKLKATKLNR 452
Query: 402 CNYVVLDEADRMIDMGFEPQVVGVLD 427
+Y+VLDEAD+M D GF PQV+ +++
Sbjct: 453 VSYLVLDEADKMFDFGFGPQVLSIVN 478
Score = 37 (18.1 bits), Expect = 6.7e-63, Sum P(2) = 6.7e-63
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 107 GSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMN 139
G +P+++ +KP F + + N + + + N
Sbjct: 12 GDDEPQEKPMKPFISFSSNINNNNNSNNNNNNN 44
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 150/382 (39%), Positives = 219/382 (57%)
Query: 239 ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETG 298
+ G P P+ + E L + + + GY +P+Q +IP+ RD++ A+TG
Sbjct: 155 VEMSGLDPPAPLLAFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTG 214
Query: 299 SGKTAAFVLPMLTYISRLP-PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIK 357
SGKTAAF+LP++ + + S + + P +++APTREL QI E KF + I+
Sbjct: 215 SGKTAAFLLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYGTCIR 274
Query: 358 VVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG 417
V I GG +I QGC ++ ATPGRL+D +E+ L + Y+VLDEADRM+DMG
Sbjct: 275 PVVIYGGTQTGHSIRQIMQGCNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRMLDMG 334
Query: 418 FEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVV- 476
F G LD M PE ++ R T MFSAT P V+RLA ++L+ +
Sbjct: 335 F-----G-LD-MKKLISYPEMPSKDR------RQTLMFSATFPEEVQRLAGEFLKTDYIF 381
Query: 477 VTIG-TAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLD 535
+ IG T G ++ + Q+++ + K +L +L G + +VFV+TKK AD +A L
Sbjct: 382 LVIGNTCGACSD-VQQNILQVPRLSKRDKLIEILQSTGGERTMVFVDTKKKADYLAAFLC 440
Query: 536 KLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNI 595
+ T++HG + Q +REI+L FR+ + +LVAT VA RG+DI +V HVIN+D+P I
Sbjct: 441 QENLPSTSIHGDREQREREIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTI 500
Query: 596 EMYTHRIGRTGRAGKTGVATTF 617
E Y HRIGRTGR G TG A +F
Sbjct: 501 EDYVHRIGRTGRCGNTGKAVSF 522
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 144/409 (35%), Positives = 237/409 (57%)
Query: 239 ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETG 298
++ +G +PRP+ + E L P + + ++ P+ IQ + P+ + RD+I IA+TG
Sbjct: 118 VTLEGRGVPRPVFEFNEAPL-PGQIHELLYGKFQKPTVIQSISWPIAMSGRDIISIAKTG 176
Query: 299 SGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKV 358
SGKT AF+LP L +I++ + EGP +V+ PTRELAQQ++E ++ F H LG+K+
Sbjct: 177 SGKTLAFMLPALVHITKQ---AHRQRGEGPAVLVLLPTRELAQQVQEVSIDFCHSLGLKM 233
Query: 359 VSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGF 418
+ GG S Q + +G ++V+ATPGRL+D L+ + +C+Y+VLDEADRM+DMGF
Sbjct: 234 TCLFGGASKGPQARDLERGVDIVVATPGRLLDFLDNGTTNMKKCSYLVLDEADRMLDMGF 293
Query: 419 EPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVT 478
EPQ+ ++ ++P+ + ++ T+ + + +L V +
Sbjct: 294 EPQIKKII-----GQIRPDRQT------LMFSATWPKEVRALASDFQKDAAFLN---VGS 339
Query: 479 IGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKT---AIVFVNTKKNADMVAKNLD 535
+ A A I+Q V +++E K ++L LL+ + ++ I+FV TK+ AD + + +
Sbjct: 340 LELA--ANHNITQVVDILEEHAKQAKLMELLNHIMNQKECKTIIFVETKRKADELTRAMR 397
Query: 536 KLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNI 595
+ G+ +HG K+Q +R+ L+ F+ + +++ATDVA RG+D+ D+ VINYD P N
Sbjct: 398 RDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAARGLDVDDIKFVINYDYPNNS 457
Query: 596 EMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPEL 644
E Y HRIGRTGR+ K G A TF T + DL ++L ++ VP L
Sbjct: 458 EDYVHRIGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQTVPQAL 506
>UNIPROTKB|B2C6E9 [details] [associations]
symbol:B2C6E9 "VASA" species:9337 "Trichosurus vulpecula"
[GO:0033391 "chromatoid body" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 EMBL:EU278597 Uniprot:B2C6E9
Length = 704
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 152/401 (37%), Positives = 223/401 (55%)
Query: 239 ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETG 298
+ G P + + E L L + + GY +P+Q IP+ L RD++ A+TG
Sbjct: 254 VEVSGHDAPPAILTFEETDLCQTLNNDITKAGYTKLTPVQKYGIPIILAGRDLMACAQTG 313
Query: 299 SGKTAAFVLPMLTYISRLP-PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIK 357
SGKTAAF+LP+L ++ R S + + P +++APTREL QI E KF+ ++
Sbjct: 314 SGKTAAFLLPILAHMMRDGVTASRFKDQQEPECIIVAPTRELINQIFLEARKFSFGTCVR 373
Query: 358 VVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG 417
V I GG + +I QGC ++ ATPGRL+D + + L Q Y+VLDEADRM+DMG
Sbjct: 374 PVVIYGGTQLGHSIRQIMQGCNILCATPGRLMDIIGKEKIGLGQIRYLVLDEADRMLDMG 433
Query: 418 FEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPA-VERLARKYLRNPVV 476
F P++ ++ + P P E R T MFSAT P + A ++L+N +
Sbjct: 434 FGPEMKKLI-SFPGM---PSKEQ---------RQTLMFSATFPRGNFKDWAGEFLKNLTI 480
Query: 477 --VTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNL 534
V +G G A + Q V+ + + K +L +L +G++ +VFV TKK AD +A L
Sbjct: 481 CLVAVGQVGGACSDVQQTVLQVGQYSKREKLVEILRNIGEERTMVFVETKKKADFIATFL 540
Query: 535 DKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGN 594
+ T++HG + Q +RE +L FR + VLVAT VA RG+DI +V HVIN+D+P
Sbjct: 541 CQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPST 600
Query: 595 IEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQ 635
I+ Y HRIGRTGR G TG A ++F D + L Q L++
Sbjct: 601 IDEYVHRIGRTGRCGNTGKA---ISFFDPEPDSHLAQPLVK 638
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
Identities = 146/345 (42%), Positives = 208/345 (60%)
Query: 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATP 385
+GP +V+APTRELA QI++E KF IK I GG Q +++G E+VIATP
Sbjct: 171 DGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATP 230
Query: 386 GRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDE 445
GRLID +E L + Y+VLDEADRM+DMGF+PQ+ ++ S+++P+
Sbjct: 231 GRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIV-----SHIRPD-------- 277
Query: 446 KRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAG-KATELISQHVVMMKESEKFSR 504
R T +SAT P VE+L++K+L NP V IG++ KA I Q V ++ ES+K+++
Sbjct: 278 ----RQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNK 333
Query: 505 LQRLLDELGDKTAI-VFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTK 563
L +LL+++ D + I VF++TKK D + + L G+ ++HG KSQ +R+ L FR+
Sbjct: 334 LVKLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSG 393
Query: 564 RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 623
+ ++ ATDVA RG+D+ DV +VINYD PG++E Y HRIGRTGRAG G A TF T +
Sbjct: 394 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANA 453
Query: 624 DVFYDLKQMLIQSNSPVPPELAKHEASKFKP----GTIPDRPPRR 664
+L +L ++ V PELA S P G DR RR
Sbjct: 454 RFAKELTNILQEAGQKVSPELASMGRSTAPPPPGLGGFRDRGSRR 498
Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
Identities = 84/215 (39%), Positives = 136/215 (63%)
Query: 225 MTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPL 284
MT+ + +R+ I+ +G IP+P++++ + +L V++ G+ P+PIQ P+
Sbjct: 73 MTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPM 132
Query: 285 GLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIE 344
++ RD+IGIAETGSGKT +++LP + +++ P ++ +GP +V+APTRELA QI+
Sbjct: 133 AMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAH---GDGPIVLVLAPTRELAVQIQ 189
Query: 345 EETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNY 404
+E KF IK I GG Q +++G E+VIATPGRLID +E L + Y
Sbjct: 190 QEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTY 249
Query: 405 VVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE 439
+VLDEADRM+DMGF+PQ+ ++ S+++P+ +
Sbjct: 250 LVLDEADRMLDMGFDPQIRKIV-----SHIRPDRQ 279
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 350 (128.3 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 77/214 (35%), Positives = 119/214 (55%)
Query: 443 LDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKF 502
L E Y+ +FSATMPPA+ +L+ KYL +P VT E ISQ + + + K
Sbjct: 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQV--ARKM 238
Query: 503 SRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRT 562
L R+L+ + IVFV TK+ + +A+ L G+ + G Q QRE ++ R
Sbjct: 239 DALTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRD 298
Query: 563 KRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHD 622
++LVATDVA RG+D+ ++HV+NYD+P + E Y HRIGRTGRAG++G A F++ +
Sbjct: 299 GDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRE 358
Query: 623 TDVFYDL----KQMLIQSNSPVPPELAKHEASKF 652
+ + +Q L ++ P ++ +KF
Sbjct: 359 LHLLKAIEKATRQTLTEAQLPTVEDVNTQRVAKF 392
Score = 342 (125.4 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 76/179 (42%), Positives = 112/179 (62%)
Query: 253 WAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTY 312
+A+ ++ P +LRA+ VGY++P+ IQ A IP + DV+G+A+TG+GKTAAF +PML+
Sbjct: 15 FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74
Query: 313 ISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLG-IKVVSIVGGQSIEEQG 371
I + P A+V+ PTRELA Q+ E ++ YL + V+ I GG S Q
Sbjct: 75 IDITSKV--------PQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQL 126
Query: 372 FRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMP 430
+R+G +VV+ TPGR+ID LER L++ +++VLDEAD M+ MGF V +L P
Sbjct: 127 AGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETP 185
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 343 (125.8 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
Identities = 71/179 (39%), Positives = 110/179 (61%)
Query: 260 PELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPI 319
PE+LRA+ GY+ +PIQ AIP + +DV+ A+TG+GKTAAF LP+L + P
Sbjct: 10 PEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVENP-- 67
Query: 320 SEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCE 379
E +++ PTRELA Q+ E ++ YL V++I GG +E Q ++++G +
Sbjct: 68 -SETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQKLKRGAD 126
Query: 380 VVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPEN 438
+++ATPGRL++ L L+ +++VLDEADRM+DMGF + +L A+ N K +N
Sbjct: 127 IIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAV---NKKRQN 182
Score = 311 (114.5 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
Identities = 67/186 (36%), Positives = 108/186 (58%)
Query: 450 RTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLL 509
R +FSAT AV++LA + + P V++ + +SQ V +++ K L L+
Sbjct: 180 RQNLLFSATFSSAVKKLANEMMIKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELI 239
Query: 510 DELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLV 569
+ + +VF T+ AD + K L+ G +HG K+Q R +L F + + VLV
Sbjct: 240 GKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLV 299
Query: 570 ATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDL 629
AT+VA RG+DIP + +V+N+D+P E Y HRIGRTGRAGK+GVA +F++ + D+
Sbjct: 300 ATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADI 359
Query: 630 KQMLIQ 635
++++ Q
Sbjct: 360 EKLIGQ 365
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 345 (126.5 bits), Expect = 5.0e-61, Sum P(2) = 5.0e-61
Identities = 73/173 (42%), Positives = 104/173 (60%)
Query: 258 LTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 317
L+ LL+AV GY+ PSPIQ AIP + RDV+ A+TG+GKTA F LP+L +S
Sbjct: 13 LSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQRLSSSK 72
Query: 318 PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 377
+ + A+++ PTRELA QI E + YL + + + GG I Q R+RQG
Sbjct: 73 --GNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARLRQG 130
Query: 378 CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMP 430
+V++ATPGRL+D +R +Q +LDEADRM+DMGF + ++ A+P
Sbjct: 131 VDVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALP 183
Score = 307 (113.1 bits), Expect = 5.0e-61, Sum P(2) = 5.0e-61
Identities = 63/186 (33%), Positives = 102/186 (54%)
Query: 450 RTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLL 509
R +FSAT P + LA+ + NP+ +++ E ++Q + + + K + L L+
Sbjct: 186 RQNLLFSATFSPEIRALAKGMVNNPLEISVDAENSTAEKVTQWLTAVDKKRKPAVLTHLI 245
Query: 510 DELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLV 569
E + +VF TK A+ + K+L+ G +HG KSQ R +L F+ +LV
Sbjct: 246 KENNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKILV 305
Query: 570 ATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDL 629
ATD+A RGIDI + V+N+D+P E Y HRIGRT RAG TG A + + + D+ + +
Sbjct: 306 ATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDLLWGI 365
Query: 630 KQMLIQ 635
+ ++ Q
Sbjct: 366 EHVIQQ 371
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 330 (121.2 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 74/169 (43%), Positives = 104/169 (61%)
Query: 258 LTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 317
L LL + +G NP+PIQ AIP LQ +DV+ A+TG+GKTAAF LP++ P
Sbjct: 13 LDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQP 72
Query: 318 PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 377
E N E A+V+ PTRELAQQ+ + +A +K+V++ GG S++ Q +R G
Sbjct: 73 WQREANSKE-IRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGG 131
Query: 378 CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVL 426
+++IATPGRL+D + L + +VLDEADRM+DMGF P + VL
Sbjct: 132 VDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVL 180
Score = 320 (117.7 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 83/264 (31%), Positives = 135/264 (51%)
Query: 406 VLDEAD-RMIDMG-FEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAV 463
+LD A + + +G E V+ D M P+ + L R T FSAT +
Sbjct: 142 LLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQ-RVLRRLSPLRQTLFFSATFDSKI 200
Query: 464 ERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNT 523
+ +A + +R+P+ V + + E + Q V + + K L L+ + +VF T
Sbjct: 201 KAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTKT 260
Query: 524 KKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV 583
++ +D +A+ L G + +++G KSQ R+ +L+ F+ + L+ATDVA RG+DI +
Sbjct: 261 RQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQL 320
Query: 584 AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPE 643
V+NYDMP E Y HRIGRTGRAG G+A + L+ HD + + L+ N+ +P E
Sbjct: 321 EQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLS-HDEQPQLEAIERLL--NTRLPQE 377
Query: 644 LAKHEASKFKPGTI--PDRPPRRN 665
K F+P + + PRR+
Sbjct: 378 WLKG----FEPSPVVHEENSPRRS 397
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 330 (121.2 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 74/169 (43%), Positives = 104/169 (61%)
Query: 258 LTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 317
L LL + +G NP+PIQ AIP LQ +DV+ A+TG+GKTAAF LP++ P
Sbjct: 13 LDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQP 72
Query: 318 PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 377
E N E A+V+ PTRELAQQ+ + +A +K+V++ GG S++ Q +R G
Sbjct: 73 WQREANSKE-IRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGG 131
Query: 378 CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVL 426
+++IATPGRL+D + L + +VLDEADRM+DMGF P + VL
Sbjct: 132 VDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVL 180
Score = 320 (117.7 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 83/264 (31%), Positives = 135/264 (51%)
Query: 406 VLDEAD-RMIDMG-FEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAV 463
+LD A + + +G E V+ D M P+ + L R T FSAT +
Sbjct: 142 LLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQ-RVLRRLSPLRQTLFFSATFDSKI 200
Query: 464 ERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNT 523
+ +A + +R+P+ V + + E + Q V + + K L L+ + +VF T
Sbjct: 201 KAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTKT 260
Query: 524 KKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV 583
++ +D +A+ L G + +++G KSQ R+ +L+ F+ + L+ATDVA RG+DI +
Sbjct: 261 RQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQL 320
Query: 584 AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPE 643
V+NYDMP E Y HRIGRTGRAG G+A + L+ HD + + L+ N+ +P E
Sbjct: 321 EQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLS-HDEQPQLEAIERLL--NTRLPQE 377
Query: 644 LAKHEASKFKPGTI--PDRPPRRN 665
K F+P + + PRR+
Sbjct: 378 WLKG----FEPSPVVHEENSPRRS 397
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
Identities = 139/337 (41%), Positives = 206/337 (61%)
Query: 320 SEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCE 379
S + + P +V+ PTRELA Q+E E K++ Y G++ V + GG + +EQ +++G +
Sbjct: 309 SLKGQRNRPGMLVLTPTRELALQVEGECCKYS-YKGLRSVCVYGGGNRDEQIEELKKGVD 367
Query: 380 VVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE 439
++IATPGRL D + L Y+VLDEAD+M+DMGFEPQ++ +L +++P+
Sbjct: 368 IIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKIL-----LDVRPD-- 420
Query: 440 DEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGK-ATELISQHVVMMKE 498
R T M SAT P +V RLA+ YL+ P++V +GT A + Q++++ E
Sbjct: 421 ----------RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTE 470
Query: 499 SEKFSRLQRLLDELG--DKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREIS 556
EK+S +Q L + DK IVFV+ K AD ++ +L V +LHG + Q RE +
Sbjct: 471 EEKWSHMQTFLQSMSSTDKV-IVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKA 529
Query: 557 LEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 616
LE F+T + +L+ATD+A RG+D+ DV HV N+D P NIE Y HRIGRTGRAG+TGV+ T
Sbjct: 530 LENFKTGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSIT 589
Query: 617 FLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFK 653
LT +D V +L +L ++N +P EL A +FK
Sbjct: 590 TLTRNDWRVASELINILERANQSIPEELVSM-AERFK 625
Score = 374 (136.7 bits), Expect = 5.1e-32, P = 5.1e-32
Identities = 82/213 (38%), Positives = 132/213 (61%)
Query: 227 ERD-WRIFREDFNISYK----GSK--IPRPMRNWAEG-KLTPELLRAVERVGYKNPSPIQ 278
E D WR +E+FNI++ G K IP P + + + PE++ +++ G++ P+PIQ
Sbjct: 212 EADSWR--KENFNITWDDLKDGEKRPIPNPTCTFDDAFQCYPEVMENIKKAGFQKPTPIQ 269
Query: 279 MAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRE 338
A P+ LQ D+IG+A+TG+GKT +++P ++ P + + G +V+ PTRE
Sbjct: 270 SQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNRPG--MLVLTPTRE 327
Query: 339 LAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAV 398
LA Q+E E K++ Y G++ V + GG + +EQ +++G +++IATPGRL D +
Sbjct: 328 LALQVEGECCKYS-YKGLRSVCVYGGGNRDEQIEELKKGVDIIIATPGRLNDLQMSNFVN 386
Query: 399 LNQCNYVVLDEADRMIDMGFEPQVVGVL-DAMP 430
L Y+VLDEAD+M+DMGFEPQ++ +L D P
Sbjct: 387 LKNITYLVLDEADKMLDMGFEPQIMKILLDVRP 419
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
Identities = 148/383 (38%), Positives = 218/383 (56%)
Query: 271 YKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYA 330
+ P+PIQ A P L +DV+G+AETGSGKT AF +P ++++ + + G
Sbjct: 132 FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMN------DQKKRGIQV 185
Query: 331 VVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLID 390
+V++PTRELA QI + + +G++ + GG +EQ ++++ +VV+ATPGRL+D
Sbjct: 186 LVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKKS-QVVVATPGRLLD 244
Query: 391 CLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYR 450
L+ L+Q NY+VLDEADRM++ GFE + ++ E D + R
Sbjct: 245 LLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNII--------------RETDASK--R 288
Query: 451 TTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKAT--ELISQHVVMMKESEKFSRLQRL 508
T MF+AT P V LA ++ NP+ V+IG + T + I+Q V ++ K +L L
Sbjct: 289 QTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLEL 348
Query: 509 LDEL--GDKT---AIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTK 563
L + G K ++F KK A V +NL GY V +HG SQ+QR +L F++
Sbjct: 349 LKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSG 408
Query: 564 RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 623
+ N+L+ATDVA RG+DIP+V VIN P +E Y HRIGRTGRAG+TG A T T +
Sbjct: 409 KSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEK 468
Query: 624 DVFYDLKQMLIQSNSPVPPELAK 646
+ L +L +N PVP +L K
Sbjct: 469 HLAGGLVNVLNGANQPVPEDLIK 491
>WB|WBGene00001600 [details] [associations]
symbol:glh-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0043186 "P granule" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0017151 "DEAD/H-box RNA helicase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
Identities = 155/431 (35%), Positives = 237/431 (54%)
Query: 231 RIFREDFNISYKGSKIP-RPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQR 289
+ F + +G + +P +++++ + + R VER GY +PIQ +PL +
Sbjct: 277 KFFDASVQLVSRGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGK 336
Query: 290 DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENE-AEG---PYAVVMAPTRELAQQIEE 345
D++ A+TGSGKTAAF+LP++ SRL + N AEG P +++ PTRELA QI
Sbjct: 337 DILACAQTGSGKTAAFLLPIM---SRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYN 393
Query: 346 ETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYV 405
E KF++ +++ + GG ++ +I +GC +++ T GR+ E L++C Y+
Sbjct: 394 EGRKFSYQSVMEIKPVYGGINVGYNKSQIMKGCTIIVGTIGRVKHFCEDGAIKLDKCRYL 453
Query: 406 VLDEADRMID-MGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVE 464
VLDEADRMID MGF P++ +++ N+ P+N+ R T MFSAT P +V+
Sbjct: 454 VLDEADRMIDSMGFGPEIEQIINY---KNM-PKNDK---------RQTMMFSATFPSSVQ 500
Query: 465 RLARKYLRNP-VVVTIGTAGKATELISQHVVMMKESEKFSRLQRLL---------DELGD 514
ARK LR ++TI G A + + Q + + K +L +LL ++ D
Sbjct: 501 EAARKLLREDYTMITIDKIGAANKCVIQEFELCDRTSKVDKLLKLLGIDIDTYTTEKNSD 560
Query: 515 ---KTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT 571
K IVFV +K AD +A + T+HG + Q++R +L+ FR+ VL+AT
Sbjct: 561 VFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHGAREQKERSAALKLFRSGAKPVLIAT 620
Query: 572 DVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTF-HDTDVFYDLK 630
V RG+DI V HVINYDMP NI+ Y HRIGRTGR G +G AT+F++ D + L
Sbjct: 621 AVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRVGNSGRATSFISLADDVQILPQLV 680
Query: 631 QMLIQSNSPVP 641
+ L + VP
Sbjct: 681 RTLADAEQVVP 691
>UNIPROTKB|O01836 [details] [associations]
symbol:glh-3 "ATP-dependent RNA helicase glh-3"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
Identities = 155/431 (35%), Positives = 237/431 (54%)
Query: 231 RIFREDFNISYKGSKIP-RPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQR 289
+ F + +G + +P +++++ + + R VER GY +PIQ +PL +
Sbjct: 277 KFFDASVQLVSRGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGK 336
Query: 290 DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENE-AEG---PYAVVMAPTRELAQQIEE 345
D++ A+TGSGKTAAF+LP++ SRL + N AEG P +++ PTRELA QI
Sbjct: 337 DILACAQTGSGKTAAFLLPIM---SRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYN 393
Query: 346 ETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYV 405
E KF++ +++ + GG ++ +I +GC +++ T GR+ E L++C Y+
Sbjct: 394 EGRKFSYQSVMEIKPVYGGINVGYNKSQIMKGCTIIVGTIGRVKHFCEDGAIKLDKCRYL 453
Query: 406 VLDEADRMID-MGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVE 464
VLDEADRMID MGF P++ +++ N+ P+N+ R T MFSAT P +V+
Sbjct: 454 VLDEADRMIDSMGFGPEIEQIINY---KNM-PKNDK---------RQTMMFSATFPSSVQ 500
Query: 465 RLARKYLRNP-VVVTIGTAGKATELISQHVVMMKESEKFSRLQRLL---------DELGD 514
ARK LR ++TI G A + + Q + + K +L +LL ++ D
Sbjct: 501 EAARKLLREDYTMITIDKIGAANKCVIQEFELCDRTSKVDKLLKLLGIDIDTYTTEKNSD 560
Query: 515 ---KTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT 571
K IVFV +K AD +A + T+HG + Q++R +L+ FR+ VL+AT
Sbjct: 561 VFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHGAREQKERSAALKLFRSGAKPVLIAT 620
Query: 572 DVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTF-HDTDVFYDLK 630
V RG+DI V HVINYDMP NI+ Y HRIGRTGR G +G AT+F++ D + L
Sbjct: 621 AVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRVGNSGRATSFISLADDVQILPQLV 680
Query: 631 QMLIQSNSPVP 641
+ L + VP
Sbjct: 681 RTLADAEQVVP 691
>TAIR|locus:2074899 [details] [associations]
symbol:AT3G09620 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 EMBL:AC016661 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 IPI:IPI00534330
RefSeq:NP_187573.1 UniGene:At.53239 ProteinModelPortal:Q9SF41
SMR:Q9SF41 PaxDb:Q9SF41 PRIDE:Q9SF41 EnsemblPlants:AT3G09620.1
GeneID:820119 KEGG:ath:AT3G09620 KEGG:dosa:Os08t0154200-01
GeneFarm:1024 TAIR:At3g09620 InParanoid:Q9SF41 OMA:RGRYKVL
PhylomeDB:Q9SF41 ArrayExpress:Q9SF41 Genevestigator:Q9SF41
GermOnline:AT3G09620 Uniprot:Q9SF41
Length = 989
Score = 451 (163.8 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 92/237 (38%), Positives = 143/237 (60%)
Query: 206 YDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRA 265
Y+ F R + + K + MT+ +R++ + G +PRP++ W + LT ++L
Sbjct: 353 YEPF--RKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 266 VERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEA 325
++++ Y+ P PIQ A+P+ + RD IG+A+TGSGKT FVLPML +I PP+
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA---G 467
Query: 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATP 385
+GP +VMAPTREL QQI + KF+ LGI V + GG + +Q +++G E+V+ TP
Sbjct: 468 DGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTP 527
Query: 386 GRLIDCL---ERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE 439
GR+ID L + L + Y+V+DEADRM DMGFEPQ+ ++ N++P+ +
Sbjct: 528 GRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ-----NIRPDRQ 579
Score = 267 (99.0 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 77/233 (33%), Positives = 116/233 (49%)
Query: 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATP 385
+GP +VMAPTREL QQI + KF+ LGI V + GG + +Q +++G E+V+ TP
Sbjct: 468 DGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTP 527
Query: 386 GRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDE 445
GR+ID L + V D D F+ + + N++P+
Sbjct: 528 GRMIDILCTSSGKITNLRRVTYLVMDEA-DRMFDMGFEPQITRIVQ-NIRPD-------- 577
Query: 446 KRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRL 505
R T +FSAT P VE LARK L PV + +G + I+Q V + ESE+FSRL
Sbjct: 578 ----RQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEIRPESERFSRL 633
Query: 506 QRLLDELGDK-TAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISL 557
LL E +K +VFV +++ + K+ D + T + + +E+ L
Sbjct: 634 LELLGEWYEKGKVLVFVRSQEKSISDFKS-DVCNLLIATSVAARGLDVKELEL 685
Score = 204 (76.9 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 45/111 (40%), Positives = 68/111 (61%)
Query: 548 KSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGR 607
+SQE+ S+ F++ N+L+AT VA RG+D+ ++ V+N+D P + E Y HR+GRTGR
Sbjct: 651 RSQEK---SISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGR 707
Query: 608 AGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPEL---AKHEASKFKPG 655
AG+ G A TF++ D DL + L S PVP ++ A+ +K K G
Sbjct: 708 AGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDVKAVAEGFMAKVKQG 758
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 135/336 (40%), Positives = 205/336 (61%)
Query: 327 GPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPG 386
GP +V+ PTRELA Q++ E +++ Y G+K V I GG + Q + +G +++IATPG
Sbjct: 315 GPGMLVLTPTRELALQVDAECSEYS-YRGLKSVCIYGGGDRDGQIKDLSKGADIIIATPG 373
Query: 387 RLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEK 446
RL D + L Y+VLDEAD+M+DMGFEPQ++ +L +++P+
Sbjct: 374 RLHDLQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMKIL-----LDVRPD--------- 419
Query: 447 RIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGK-ATELISQHVVMMKESEKFSRL 505
R T M SAT P AV RLA+ YL+ P++V +GT A ++Q++++ E EK S +
Sbjct: 420 ---RQTVMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVTQNIIVTTEDEKRSHI 476
Query: 506 QRLLDELGDKT-AIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKR 564
Q +D + K I+FV+ K AD ++ +L V +LHG + Q RE +L+ F+T +
Sbjct: 477 QAFIDSMSPKDKVIIFVSRKAVADHLSSDLGIRRISVESLHGNREQSDRERALKSFKTGK 536
Query: 565 YNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTD 624
+L+ATD+A RG+D+ DV HV NYD P NIE Y HR+GRTGRAG+TGV+ T +T +D
Sbjct: 537 VRILIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRNDWK 596
Query: 625 VFYDLKQMLIQSNSPVPPELA----KHEASKFKPGT 656
+ +L +L ++N VP +L +++A+K K T
Sbjct: 597 IAGELINILERANQSVPEDLVSMAERYKANKLKKET 632
Score = 378 (138.1 bits), Expect = 1.7e-32, P = 1.7e-32
Identities = 79/215 (36%), Positives = 131/215 (60%)
Query: 218 SEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEG-KLTPELLRAVERVGYKNPSP 276
S+++++ + ++ I +D K +P P N+ + PE++R +E+ G++ P+P
Sbjct: 208 SQEQVDNWRKENYNIICDDLKDGEK-RPLPNPTCNFEDAFHCYPEVMRNIEKAGFQKPTP 266
Query: 277 IQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPT 336
IQ A P+ LQ D+IG+A+TG+GKT ++++P +I P + + GP +V+ PT
Sbjct: 267 IQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHIDSQPVL--QRARNGPGMLVLTPT 324
Query: 337 RELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRY 396
RELA Q++ E +++ Y G+K V I GG + Q + +G +++IATPGRL D +
Sbjct: 325 RELALQVDAECSEYS-YRGLKSVCIYGGGDRDGQIKDLSKGADIIIATPGRLHDLQMNNF 383
Query: 397 AVLNQCNYVVLDEADRMIDMGFEPQVVGVL-DAMP 430
L Y+VLDEAD+M+DMGFEPQ++ +L D P
Sbjct: 384 VYLKSITYLVLDEADKMLDMGFEPQIMKILLDVRP 418
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 164/385 (42%), Positives = 215/385 (55%)
Query: 270 GYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPY 329
G+ +P+ IQ A PL RDVIGIAETGSGKT AF LP L ++ + + ++ P
Sbjct: 92 GFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCL---KKVLDLKTKQKSCRPL 148
Query: 330 AVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLI 389
AVV++PTRELA QI ++ VKFA + I+V I GG +EQ ++ VV+ATPGRL
Sbjct: 149 AVVISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREALKSAA-VVVATPGRLK 207
Query: 390 DCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIY 449
D L + Y+VLDEADRM+D GFE + ++ MP S
Sbjct: 208 DLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSK---------------- 251
Query: 450 RTTYMFSATMPPAVERLARKYLRNPVVVTIG---TAG-KATELISQHVVMMKESEKFSRL 505
R T MF+AT PP V LA ++ +PV VTIG +A +A I Q V ++K EK RL
Sbjct: 252 RQTVMFTATWPPIVRNLASTFMTSPVTVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRL 311
Query: 506 QRLLD--ELG--DKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFR 561
++L+ + G DK + F KK A V + L G++V +HG SQ++R SLE F+
Sbjct: 312 VQILNRHQRGTPDKV-LAFCLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAFK 370
Query: 562 TKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFH 621
+ VLVATDVA RG+DIP V V+N P +E Y HRIGRTGRAG G A T T
Sbjct: 371 SGAATVLVATDVAARGLDIPHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAITLFTET 430
Query: 622 DTDVFYDLKQMLIQSNSPVPPELAK 646
D L +L +N VP L K
Sbjct: 431 DKAQSGALINVLKAANQEVPEALLK 455
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 139/323 (43%), Positives = 200/323 (61%)
Query: 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATP 385
+GP +++APTRELA QI+EE+ KF G++ I GG Q +R+G E+VIATP
Sbjct: 237 DGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATP 296
Query: 386 GRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDE 445
GRLID LE ++ L + Y+VLDEADRM+DMGFEPQ+ ++ S ++P+
Sbjct: 297 GRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIV-----SQIRPD-------- 343
Query: 446 KRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAG-KATELISQHVVMMKESEKFSR 504
R T ++SAT P VE LAR++LR+P IG+ KA + I+Q + ++ EK++R
Sbjct: 344 ----RQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNR 399
Query: 505 LQRLLDELGDKTAI-VFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTK 563
L LL +L D + I +FV TK+ D V + L G+ +HG K+Q +R+ L F++
Sbjct: 400 LLTLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSG 459
Query: 564 RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 623
R ++ ATDVA RG+D+ D+ V+NYD P +E Y HRIGRTGRAG G+A TF T HD
Sbjct: 460 RSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFT-HDN 518
Query: 624 DVFY-DLKQMLIQSNSPVPPELA 645
F +L ++L ++ VPP L+
Sbjct: 519 AKFARELVKILQEAGQVVPPTLS 541
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 93/218 (42%), Positives = 145/218 (66%)
Query: 222 LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAA 281
++ MTE+D ++R + +IS +G +P+PM+ + + +L A+ ++G+ P+PIQ
Sbjct: 136 VQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQG 195
Query: 282 IPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341
P+ L+ RD+IGIAETGSGKT A++LP L ++S P + ++ +GP +++APTRELA
Sbjct: 196 WPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQD---DGPIVLILAPTRELAV 252
Query: 342 QIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQ 401
QI+EE+ KF G++ I GG Q +R+G E+VIATPGRLID LE ++ L +
Sbjct: 253 QIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKR 312
Query: 402 CNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE 439
Y+VLDEADRM+DMGFEPQ+ ++ S ++P+ +
Sbjct: 313 VTYLVLDEADRMLDMGFEPQIRKIV-----SQIRPDRQ 345
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 342 (125.4 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
Identities = 69/173 (39%), Positives = 108/173 (62%)
Query: 258 LTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 317
L+ +L+A+E GY PSPIQ+ AIP L +DV+ A+TG+GKTA F LP+L +++ P
Sbjct: 8 LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGP 67
Query: 318 PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 377
+ N+ A+++ PTRELA QI++ + + +L +K + GG I Q R+ +G
Sbjct: 68 KV-RANQVR---ALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKG 123
Query: 378 CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMP 430
++++ATPGRL+D + +Q +VLDEADRM+DMGF + +L +P
Sbjct: 124 ADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLP 176
Score = 298 (110.0 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
Identities = 70/213 (32%), Positives = 111/213 (52%)
Query: 450 RTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLL 509
R +FSAT + LA+ + NPV +++ A + Q + +K L +L+
Sbjct: 179 RQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLV 238
Query: 510 DELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLV 569
E + +VF+ TK A+ +A L++ G +HG KSQ R +L F+ +LV
Sbjct: 239 KEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
Query: 570 ATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDL 629
ATD+A RGIDIP + V+N+++P E Y HRIGRTGRAG+ G A + ++ + + +
Sbjct: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAI 358
Query: 630 KQMLIQSNSPVPPELAKHEASKFKPGTIPDRPP 662
++ L Q+ P LA E + P + D P
Sbjct: 359 ER-LTQALLP-RVNLAGFEPTNQLPESKLDTRP 389
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 342 (125.4 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
Identities = 69/173 (39%), Positives = 108/173 (62%)
Query: 258 LTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 317
L+ +L+A+E GY PSPIQ+ AIP L +DV+ A+TG+GKTA F LP+L +++ P
Sbjct: 8 LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGP 67
Query: 318 PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 377
+ N+ A+++ PTRELA QI++ + + +L +K + GG I Q R+ +G
Sbjct: 68 KV-RANQVR---ALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKG 123
Query: 378 CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMP 430
++++ATPGRL+D + +Q +VLDEADRM+DMGF + +L +P
Sbjct: 124 ADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLP 176
Score = 298 (110.0 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
Identities = 70/213 (32%), Positives = 111/213 (52%)
Query: 450 RTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLL 509
R +FSAT + LA+ + NPV +++ A + Q + +K L +L+
Sbjct: 179 RQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLV 238
Query: 510 DELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLV 569
E + +VF+ TK A+ +A L++ G +HG KSQ R +L F+ +LV
Sbjct: 239 KEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
Query: 570 ATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDL 629
ATD+A RGIDIP + V+N+++P E Y HRIGRTGRAG+ G A + ++ + + +
Sbjct: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAI 358
Query: 630 KQMLIQSNSPVPPELAKHEASKFKPGTIPDRPP 662
++ L Q+ P LA E + P + D P
Sbjct: 359 ER-LTQALLP-RVNLAGFEPTNQLPESKLDTRP 389
>GENEDB_PFALCIPARUM|PF08_0096 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003724 "RNA helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 616 (221.9 bits), Expect = 1.2e-59, P = 1.2e-59
Identities = 130/321 (40%), Positives = 196/321 (61%)
Query: 328 PYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGR 387
P +++APTRELA QI + KF GIK V + GG +I+ Q + +G ++++ATPGR
Sbjct: 452 PICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIKTQLSNLDKGADIIVATPGR 511
Query: 388 LIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDA--MPSSNLKPENEDEELDE 445
L D LE+ L ++VLDEADRM+DMGF PQ+ +++ MP ++ + +++
Sbjct: 512 LNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVNDYDMPGNDNDVHTSENKVEY 571
Query: 446 KR-----IYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESE 500
K+ I R T MFSAT ++ LA++YL + +G G E I Q++V ++E
Sbjct: 572 KKYCNDIIKRQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVGSTNEYIKQNLVFVEEEN 631
Query: 501 KFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGF 560
K + L LL E + I+FV TK+ AD++ + L +HG KSQ++RE +L+ F
Sbjct: 632 KCNYLLNLLAENNNGLTILFVETKRKADIIERFLSNQKLNAVCIHGDKSQDERERALKLF 691
Query: 561 RTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTF 620
+ N+LVATDVA RG+DI ++ HVIN+D+P NI+ Y HRIGRTGRAG G+AT+F+
Sbjct: 692 KRGIKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGRAGNIGIATSFVNE 751
Query: 621 HDTDVFYDLKQMLIQSNSPVP 641
+ ++F DL L + N +P
Sbjct: 752 DNKNIFKDLLATLEECNQQIP 772
Score = 319 (117.4 bits), Expect = 2.5e-25, P = 2.5e-25
Identities = 71/201 (35%), Positives = 119/201 (59%)
Query: 262 LLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTY-ISRLPP-- 318
LL +++V Y +PIQ ++ + + + D+IG+A+TGSGKTA ++LP++ + + PP
Sbjct: 373 LLSNIKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHMLINDPPKH 432
Query: 319 --ISEENEAEG--------PYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIE 368
+ N+ P +++APTRELA QI + KF GIK V + GG +I+
Sbjct: 433 TYYEQNNKTSNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIK 492
Query: 369 EQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDA 428
Q + +G ++++ATPGRL D LE+ L ++VLDEADRM+DMGF PQ+ +++
Sbjct: 493 TQLSNLDKGADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVND 552
Query: 429 --MPSSNLKPENEDEELDEKR 447
MP ++ + +++ K+
Sbjct: 553 YDMPGNDNDVHTSENKVEYKK 573
>UNIPROTKB|Q8IAU1 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0003724 "RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 616 (221.9 bits), Expect = 1.2e-59, P = 1.2e-59
Identities = 130/321 (40%), Positives = 196/321 (61%)
Query: 328 PYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGR 387
P +++APTRELA QI + KF GIK V + GG +I+ Q + +G ++++ATPGR
Sbjct: 452 PICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIKTQLSNLDKGADIIVATPGR 511
Query: 388 LIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDA--MPSSNLKPENEDEELDE 445
L D LE+ L ++VLDEADRM+DMGF PQ+ +++ MP ++ + +++
Sbjct: 512 LNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVNDYDMPGNDNDVHTSENKVEY 571
Query: 446 KR-----IYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESE 500
K+ I R T MFSAT ++ LA++YL + +G G E I Q++V ++E
Sbjct: 572 KKYCNDIIKRQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVGSTNEYIKQNLVFVEEEN 631
Query: 501 KFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGF 560
K + L LL E + I+FV TK+ AD++ + L +HG KSQ++RE +L+ F
Sbjct: 632 KCNYLLNLLAENNNGLTILFVETKRKADIIERFLSNQKLNAVCIHGDKSQDERERALKLF 691
Query: 561 RTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTF 620
+ N+LVATDVA RG+DI ++ HVIN+D+P NI+ Y HRIGRTGRAG G+AT+F+
Sbjct: 692 KRGIKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGRAGNIGIATSFVNE 751
Query: 621 HDTDVFYDLKQMLIQSNSPVP 641
+ ++F DL L + N +P
Sbjct: 752 DNKNIFKDLLATLEECNQQIP 772
Score = 319 (117.4 bits), Expect = 2.5e-25, P = 2.5e-25
Identities = 71/201 (35%), Positives = 119/201 (59%)
Query: 262 LLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTY-ISRLPP-- 318
LL +++V Y +PIQ ++ + + + D+IG+A+TGSGKTA ++LP++ + + PP
Sbjct: 373 LLSNIKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHMLINDPPKH 432
Query: 319 --ISEENEAEG--------PYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIE 368
+ N+ P +++APTRELA QI + KF GIK V + GG +I+
Sbjct: 433 TYYEQNNKTSNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIK 492
Query: 369 EQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDA 428
Q + +G ++++ATPGRL D LE+ L ++VLDEADRM+DMGF PQ+ +++
Sbjct: 493 TQLSNLDKGADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVND 552
Query: 429 --MPSSNLKPENEDEELDEKR 447
MP ++ + +++ K+
Sbjct: 553 YDMPGNDNDVHTSENKVEYKK 573
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 343 (125.8 bits), Expect = 1.2e-59, Sum P(2) = 1.2e-59
Identities = 81/216 (37%), Positives = 122/216 (56%)
Query: 450 RTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKAT-ELISQHVVMMKESEKFSRLQRL 508
R T +FSATMP +E LA L +P + I TA T +L++Q V + +S K L +
Sbjct: 181 RQTLLFSATMPAEIEILAEAILTDPTKIQI-TAETVTIDLVNQSVYHLDKSNKVPLLFNI 239
Query: 509 LDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVL 568
L + + ++F TK AD++ K L+K +LH GK+Q RE +L+ F+ VL
Sbjct: 240 LTKADYEKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRVL 299
Query: 569 VATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYD 628
VATDVA RGID+ ++ VINY++P + Y HRIGRT RAGK+G+A +F +D +
Sbjct: 300 VATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIRQLTN 359
Query: 629 LKQMLIQSNSPVPPELAKHEASKFKPGTIPDRPPRR 664
++ + Q PV E H+ +F I D+ ++
Sbjct: 360 IENSIGQV-IPVVTEQPFHK--EFSKAPIQDKKKKQ 392
Score = 296 (109.3 bits), Expect = 1.2e-59, Sum P(2) = 1.2e-59
Identities = 65/175 (37%), Positives = 98/175 (56%)
Query: 258 LTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 317
L ++ V GYK P+PIQ IP + D++GIA+TG+GKTAAF LP++ R
Sbjct: 9 LLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINKFGRN- 67
Query: 318 PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 377
+ +A+ ++++ PTRELA QI + ++ LG+K + GG + Q I G
Sbjct: 68 --KIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDSIELG 125
Query: 378 CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 432
++++ATPGRL+D +E VLDEAD M+DMGF V ++ +P S
Sbjct: 126 LDILVATPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKS 180
>WB|WBGene00001598 [details] [associations]
symbol:glh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008432 "JUN kinase binding" evidence=IPI]
[GO:0043621 "protein self-association" evidence=IPI] [GO:0017151
"DEAD/H-box RNA helicase binding" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 GO:GO:0009791 GO:GO:0007281 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772 EMBL:FO080897
PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
Identities = 158/414 (38%), Positives = 225/414 (54%)
Query: 248 RPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVL 307
+P + +AE LT + + V GY +PIQ A+PL Q D++ A+TGSGKTAAF+L
Sbjct: 338 KPCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLL 397
Query: 308 PMLTYISRLPPISEENEA-EG---PYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVG 363
P++T RL + N A EG P +++ PTRELA QI E KFA+ +++ + G
Sbjct: 398 PIMT---RLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYG 454
Query: 364 GQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMID-MGFEPQV 422
G ++ +I +G +++ T GR+ E L++C + VLDEADRMID MGF +
Sbjct: 455 GLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDI 514
Query: 423 VGVL--DAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR-NPVVVTI 479
++ D+MP + EN R T MFSAT P +V+ AR +LR N V++ I
Sbjct: 515 ETIVNYDSMP----RKEN-----------RQTLMFSATFPDSVQEAARAFLRENYVMIAI 559
Query: 480 GTAGKATELISQHVVMMKESEKFSRLQRLLD------------ELGDKTAIVFVNTKKNA 527
G A + + Q + SEK +L LL E+ K +VFV+ + A
Sbjct: 560 DKIGAANKCVLQEFERCERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMA 619
Query: 528 DMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVI 587
D +A L T+HG + Q +R +L FR VL+AT VA RG+DI V HVI
Sbjct: 620 DTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVI 679
Query: 588 NYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP 641
NYDMP NI+ Y HRIGRTGR G +G AT+F++ D + +L +L + VP
Sbjct: 680 NYDMPDNIDDYIHRIGRTGRVGNSGRATSFIS-EDCSLLSELVGVLADAQQIVP 732
>UNIPROTKB|P34689 [details] [associations]
symbol:glh-1 "ATP-dependent RNA helicase glh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772
EMBL:FO080897 PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
Identities = 158/414 (38%), Positives = 225/414 (54%)
Query: 248 RPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVL 307
+P + +AE LT + + V GY +PIQ A+PL Q D++ A+TGSGKTAAF+L
Sbjct: 338 KPCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLL 397
Query: 308 PMLTYISRLPPISEENEA-EG---PYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVG 363
P++T RL + N A EG P +++ PTRELA QI E KFA+ +++ + G
Sbjct: 398 PIMT---RLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYG 454
Query: 364 GQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMID-MGFEPQV 422
G ++ +I +G +++ T GR+ E L++C + VLDEADRMID MGF +
Sbjct: 455 GLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDI 514
Query: 423 VGVL--DAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR-NPVVVTI 479
++ D+MP + EN R T MFSAT P +V+ AR +LR N V++ I
Sbjct: 515 ETIVNYDSMP----RKEN-----------RQTLMFSATFPDSVQEAARAFLRENYVMIAI 559
Query: 480 GTAGKATELISQHVVMMKESEKFSRLQRLLD------------ELGDKTAIVFVNTKKNA 527
G A + + Q + SEK +L LL E+ K +VFV+ + A
Sbjct: 560 DKIGAANKCVLQEFERCERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMA 619
Query: 528 DMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVI 587
D +A L T+HG + Q +R +L FR VL+AT VA RG+DI V HVI
Sbjct: 620 DTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVI 679
Query: 588 NYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP 641
NYDMP NI+ Y HRIGRTGR G +G AT+F++ D + +L +L + VP
Sbjct: 680 NYDMPDNIDDYIHRIGRTGRVGNSGRATSFIS-EDCSLLSELVGVLADAQQIVP 732
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 584 (210.6 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 135/322 (41%), Positives = 191/322 (59%)
Query: 327 GPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPG 386
GP +V++PTRELA QI+ E +KF I + GG Q I +G ++V+ATPG
Sbjct: 301 GPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPG 360
Query: 387 RLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEK 446
RL D LE + L+Q +Y+VLDEADRM+DMGFEPQ+ +++ +P+
Sbjct: 361 RLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTK-------------- 406
Query: 447 RIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGK--ATELISQHVVMMKESEKFSR 504
R T M++AT P V ++A L NP V IG + A + I+Q + ++ EK SR
Sbjct: 407 ---RQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSR 463
Query: 505 LQRLL--DELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRT 562
L+++L E G K I+F +TK+ D +A+NL + + +HG KSQ +R+ L FR+
Sbjct: 464 LEQILRSQEPGSKI-IIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRS 521
Query: 563 KRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHD 622
R VLVATDVA RG+D+ D+ V+NYD P +E Y HRIGRTGRAG TG+A TF D
Sbjct: 522 GRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQD 581
Query: 623 TDVFYDLKQMLIQSNSPVPPEL 644
DL ++L +N VPP++
Sbjct: 582 AKHASDLIKILEGANQKVPPQV 603
Score = 351 (128.6 bits), Expect = 3.6e-29, Sum P(2) = 3.6e-29
Identities = 72/169 (42%), Positives = 108/169 (63%)
Query: 264 RAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEEN 323
R V G+ PSPIQ + P+ +Q RD++ IA+TGSGKT +++P ++ R+ N
Sbjct: 242 RMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRI-----HN 296
Query: 324 EAE-GPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVI 382
++ GP +V++PTRELA QI+ E +KF I + GG Q I +G ++V+
Sbjct: 297 DSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVV 356
Query: 383 ATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 431
ATPGRL D LE + L+Q +Y+VLDEADRM+DMGFEPQ+ +++ +P+
Sbjct: 357 ATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPT 405
Score = 42 (19.8 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 239 ISYKGSKIPRPMRNWAEGKLTPELLR 264
I+ G ++P P+ ++ L ELLR
Sbjct: 149 ITVSGGQVPPPLMSFEATGLPNELLR 174
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 145/425 (34%), Positives = 240/425 (56%)
Query: 233 FREDFNISYKGSK---IPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQR 289
F ++F IS K +P+P+ + E ++ ++ P+P+Q P+ L
Sbjct: 119 FIKEFEISIKKENNFYLPKPI-DTIESVPFQSTIKNFLSKKFEKPTPVQSLGWPIALSGS 177
Query: 290 DVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVK 349
D++GI++TGSGKT +F+LP + +I P ++ GP +V+APTRELA QI +E +
Sbjct: 178 DMLGISKTGSGKTLSFILPAIEHILAQP---RQSYYPGPSVLVVAPTRELANQINQEAEQ 234
Query: 350 FAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDE 409
+ + I++ +I GG Q ++ + ++V+ TPGR+ID +E L +++V+DE
Sbjct: 235 YLRLVNIEIATIYGGAPRRSQQLQLSRRPKIVVGTPGRIIDFMESGDLSLKNISFLVVDE 294
Query: 410 ADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARK 469
ADR+++MGFE Q+ G+ ++ ++P D + +Y +SAT P V A K
Sbjct: 295 ADRLMEMGFEQQIDGIFNS-----IRP-------DRQVLY-----WSATWPKKVSSFAEK 337
Query: 470 YLRNPVVVTIGTAG-KATELISQHV-VMMKESEKFSRLQRLLDEL--GDKTA--IVFVNT 523
++R P+ + IG++ A + ISQ ++ +++K L L E+ D+ A ++F T
Sbjct: 338 HIRTPIRLQIGSSQLTANKNISQKFKIVPTDADKVDALMDTLGEIYSADEKAQTLIFTMT 397
Query: 524 KKNADMVAKNLDKLG--YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIP 581
KK AD + + G R+ TLHG Q +RE ++ F+ KR +++VATDVA RG+DI
Sbjct: 398 KKGADTLKHYIQSNGDNVRIDTLHGDVDQNRRERIVQDFKNKRLDIVVATDVASRGLDIK 457
Query: 582 DVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT---FHDTDVFYDLKQMLIQSNS 638
++HVIN+ +P + E Y HRIGRTGRAG G + + L+ D ++ DL +L +S
Sbjct: 458 GISHVINFSLPSDCETYVHRIGRTGRAGALGTSHSILSNNSLDDMELVGDLTNLLQRSEQ 517
Query: 639 PVPPE 643
VP E
Sbjct: 518 EVPSE 522
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 333 (122.3 bits), Expect = 5.2e-59, Sum P(2) = 5.2e-59
Identities = 79/182 (43%), Positives = 112/182 (61%)
Query: 252 NWAE-GKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPML 310
++AE G + P R E +GY +P+P+Q A IP L RDV+ A TGSGKTAAF LP+L
Sbjct: 10 SFAELGIIAPLGNRLTE-LGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLL 68
Query: 311 TYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFA-HYLG-IKVVSIVGGQSIE 368
+S S + A +V+ PTRELAQQ+ + + +A H+ G +K+V+ GG S+
Sbjct: 69 QRLSEAK--SADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVN 126
Query: 369 EQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDA 428
Q +R G +V++ATPGRL+D L L Q + VLDEADRM+ +GF ++ VL A
Sbjct: 127 LQMQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAA 186
Query: 429 MP 430
+P
Sbjct: 187 LP 188
Score = 301 (111.0 bits), Expect = 5.2e-59, Sum P(2) = 5.2e-59
Identities = 73/219 (33%), Positives = 117/219 (53%)
Query: 450 RTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLL 509
+ T +FSAT P V L K L P+ + + ++T I Q V+ + +K + L L+
Sbjct: 191 KQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQEST--IEQRVITVNREQKTALLAHLI 248
Query: 510 DELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLV 569
+ A++FV+ K + +A+ L K G HG K+Q R L+GF+ +VL+
Sbjct: 249 KQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLI 308
Query: 570 ATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT---FHDTDVF 626
ATD+A RGIDI + VIN+D+P + Y HRIGR+GRAG+ G+A T ++ +H V
Sbjct: 309 ATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVI 368
Query: 627 YDLKQMLI--------QSNSPVPPELAKHEASKFKP-GT 656
++ + ++N+ +P E+ E + KP GT
Sbjct: 369 EKKNKIKLVREQIPGFEANAEIPLEVLAQEKPQAKPEGT 407
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 333 (122.3 bits), Expect = 5.2e-59, Sum P(2) = 5.2e-59
Identities = 79/182 (43%), Positives = 112/182 (61%)
Query: 252 NWAE-GKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPML 310
++AE G + P R E +GY +P+P+Q A IP L RDV+ A TGSGKTAAF LP+L
Sbjct: 10 SFAELGIIAPLGNRLTE-LGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLL 68
Query: 311 TYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFA-HYLG-IKVVSIVGGQSIE 368
+S S + A +V+ PTRELAQQ+ + + +A H+ G +K+V+ GG S+
Sbjct: 69 QRLSEAK--SADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVN 126
Query: 369 EQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDA 428
Q +R G +V++ATPGRL+D L L Q + VLDEADRM+ +GF ++ VL A
Sbjct: 127 LQMQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAA 186
Query: 429 MP 430
+P
Sbjct: 187 LP 188
Score = 301 (111.0 bits), Expect = 5.2e-59, Sum P(2) = 5.2e-59
Identities = 73/219 (33%), Positives = 117/219 (53%)
Query: 450 RTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLL 509
+ T +FSAT P V L K L P+ + + ++T I Q V+ + +K + L L+
Sbjct: 191 KQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQEST--IEQRVITVNREQKTALLAHLI 248
Query: 510 DELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLV 569
+ A++FV+ K + +A+ L K G HG K+Q R L+GF+ +VL+
Sbjct: 249 KQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLI 308
Query: 570 ATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT---FHDTDVF 626
ATD+A RGIDI + VIN+D+P + Y HRIGR+GRAG+ G+A T ++ +H V
Sbjct: 309 ATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVI 368
Query: 627 YDLKQMLI--------QSNSPVPPELAKHEASKFKP-GT 656
++ + ++N+ +P E+ E + KP GT
Sbjct: 369 EKKNKIKLVREQIPGFEANAEIPLEVLAQEKPQAKPEGT 407
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 163/436 (37%), Positives = 238/436 (54%)
Query: 219 EKKLEEMTERDWRIFREDFNISYKGSKIPR--PMRNWAEGKLTPELLRAVERVGYKNPSP 276
EKKLE + ++ ++ KG + + ++ +AE L +L + ++ PSP
Sbjct: 82 EKKLEAEDLGEGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSP 139
Query: 277 IQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYI-SRLPPISEENEAEGPYAVVMAP 335
IQ P L RD+IGIA+TGSGKT AF +P + ++ + I ++ P +V++P
Sbjct: 140 IQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSP 199
Query: 336 TRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERR 395
TRELA QI + + G+K + + GG S Q IR G ++VI TPGRL D +E
Sbjct: 200 TRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESN 259
Query: 396 YAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMF 455
L+ ++VVLDEADRM+DMGFE V +L SN N+ R MF
Sbjct: 260 VLRLSDVSFVVLDEADRMLDMGFEEPVRFIL-----SNT---NK---------VRQMVMF 302
Query: 456 SATMPPAVERLARKYLR-NPVVVTIGTAGKATEL-ISQHVVMMKESEKFSRLQRLLDEL- 512
SAT P V +LA++++ NP+ V IG+ A + Q + ++ E + RL LL++
Sbjct: 303 SATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYH 362
Query: 513 -GDKTAI-VFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVA 570
K + VF K A+ + + L + G++ ++HG K+Q +R SL F+ +LVA
Sbjct: 363 KSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVA 422
Query: 571 TDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLK 630
TDVA RG+DIPDV VINY P E Y HRIGRTGRAGK GVA TF T + + +L
Sbjct: 423 TDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELV 482
Query: 631 QMLIQSNSPVPPELAK 646
+L ++ VP +L K
Sbjct: 483 NVLREAGQVVPADLLK 498
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 581 (209.6 bits), Expect = 1.7e-58, Sum P(2) = 1.7e-58
Identities = 136/326 (41%), Positives = 192/326 (58%)
Query: 321 EENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEV 380
E EGP AV++ PTREL QQI E +F G++ V++ GG S+ EQ +++G E+
Sbjct: 324 ELEPGEGPIAVIVCPTRELCQQIHAECKRFGKAYGLRSVAVYGGGSMWEQAKALQEGAEI 383
Query: 381 VIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENED 440
V+ TPGRLID ++++ L + ++V DEADRM DMGFE QV + +S+++P+
Sbjct: 384 VVCTPGRLIDHVKKKATSLQRVTFLVFDEADRMFDMGFEYQVRSI-----ASHVRPD--- 435
Query: 441 EELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHV-VMMKES 499
R T +FSAT +E+LAR L +P+ V G G+A E I+Q V V+
Sbjct: 436 ---------RQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQIVEVLQSGQ 486
Query: 500 EKFSRLQRLLDELGDK-TAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLE 558
+K+ L R L E + +VFV K N + +A NL + GY + LHG Q +R +
Sbjct: 487 DKWGWLTRRLVEFTSAGSVLVFVTKKANCEELATNLIQEGYSLGLLHGDMDQSERNKVIA 546
Query: 559 GFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFL 618
F+ K VLVATDVA RG+DIP + V+NYD+ +I+ +THRIGRTGRAG+ GVA T L
Sbjct: 547 DFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 606
Query: 619 TFHDTDVFYDLKQMLIQSNSPVPPEL 644
T DT DL + L +N V +L
Sbjct: 607 TTKDTSFAGDLVRNLEGANQSVSKDL 632
Score = 404 (147.3 bits), Expect = 3.6e-35, P = 3.6e-35
Identities = 83/220 (37%), Positives = 131/220 (59%)
Query: 220 KKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQM 279
+++ +T + R N+ G+ P+P ++A +L+ + + Y P+PIQ
Sbjct: 226 EEISSLTGAEVVELRRKLNLKVSGAAPPKPATSFAHFGFDEQLMHQIRKSEYTQPTPIQC 285
Query: 280 AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339
+P+ L RD IGIA+TGSGKTAAF+ P+L +I E EGP AV++ PTREL
Sbjct: 286 QGVPIALSGRDAIGIAKTGSGKTAAFIWPILVHIMDQ---KELEPGEGPIAVIVCPTREL 342
Query: 340 AQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVL 399
QQI E +F G++ V++ GG S+ EQ +++G E+V+ TPGRLID ++++ L
Sbjct: 343 CQQIHAECKRFGKAYGLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSL 402
Query: 400 NQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE 439
+ ++V DEADRM DMGFE QV + +S+++P+ +
Sbjct: 403 QRVTFLVFDEADRMFDMGFEYQVRSI-----ASHVRPDRQ 437
Score = 48 (22.0 bits), Expect = 1.7e-58, Sum P(2) = 1.7e-58
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 319 ISEENEAEGPYAVVMA--PTRELAQQIEEETVKF 350
I EE++ E Y MA PT L Q+ EEE V +
Sbjct: 154 IEEEDDQEA-YFRYMAENPTAGLTQEEEEEEVDY 186
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 500 (181.1 bits), Expect = 4.1e-58, Sum P(2) = 4.1e-58
Identities = 122/334 (36%), Positives = 188/334 (56%)
Query: 319 ISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGC 378
I+ A Y +++ PTREL Q+ +E F L IK V++ GG Q +++G
Sbjct: 419 INSSERASDTYGLILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQINNLKKGA 478
Query: 379 EVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPEN 438
++++ATPGRL+D LE L +C YVV+DEADR++DMGFE Q+ ++ + N
Sbjct: 479 DIIVATPGRLLDFLENGNINLLKCIYVVIDEADRLLDMGFEKQLRKIMTQV--------N 530
Query: 439 EDEELDEKRIYRTTYMFSATMPPAVERLARKYLR-NPVVVTIGTAG-KATELISQHVVMM 496
++++L ++ T AT P V +LA + +PV + IG A + I Q+V++
Sbjct: 531 KNKQL----LFLT-----ATWPEQVRKLAYDFCSYDPVKIQIGKNELTANKNIEQNVIIS 581
Query: 497 KESEKFSRLQRLLDELGDKTAI-VFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREI 555
+ +L L E + I +F +TK+N D + K L Y ++HG K Q +R+
Sbjct: 582 SSIDMKKKLLDWLKENYENNKILIFCDTKRNCDNLCKELRYHQYNALSIHGDKQQRERDR 641
Query: 556 SLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVAT 615
L ++T R N+LVATDVA RG+DI +++ VINYD+P IE Y HRIGRTGRAGK G +
Sbjct: 642 ILNNYKTDRCNILVATDVASRGLDIKNISVVINYDIPNTIEDYIHRIGRTGRAGKKGKSI 701
Query: 616 TFLTF-----HDTDVFYDLKQMLIQSNSPVPPEL 644
F ++ +L ++L ++N VPP+L
Sbjct: 702 LFFSYDYYMPQKLKFAKELIKLLNKTNQTVPPQL 735
Score = 120 (47.3 bits), Expect = 4.1e-58, Sum P(2) = 4.1e-58
Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 271 YKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEEN 323
+ P+ IQ P+ L +D+IG+AETGSGKT AFVLP +I + I + N
Sbjct: 307 FSEPTAIQKITWPIALSGKDLIGVAETGSGKTLAFVLPCFMHILKHKEIIQNN 359
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 152/437 (34%), Positives = 237/437 (54%)
Query: 222 LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAA 281
+ +M+ + + R+ ++I+ G IP P++N+ + K LLR ++ G +P+PIQ+
Sbjct: 68 VRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQG 127
Query: 282 IPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341
+P+ L RD+IGIA TGSGKT FVLPM+ + + EGP A+V+ P+RELA+
Sbjct: 128 LPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAK 187
Query: 342 QIEEETVKFAHYLGIKVVSIVGGQSIEEQGF-RIRQGCEVVIATPGRLIDCLERRYAVLN 400
Q + +F V S+V E G+ R+R ++ G +D + + V+
Sbjct: 188 QTYDVVEQF-------VASLV------EDGYPRLRS----LLCIGG--VD-MRSQLDVVK 227
Query: 401 QCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPEN-------EDE---ELDEKRIYR 450
+ ++V+ R+ D+ + ++ LDA L + ED+ D + R
Sbjct: 228 KGVHIVVATPGRLKDILAKKKMS--LDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQR 285
Query: 451 TTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLD 510
T +FSATMP ++ A L PV V +G AG A + Q V +K+ K L L
Sbjct: 286 QTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQ 345
Query: 511 ELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVA 570
+ ++F K + D + + L G +HGGK QE R+ ++ F+ + +VLVA
Sbjct: 346 KT-TPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVA 404
Query: 571 TDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDV-FYDL 629
TDVA +G+D PD+ HVINYDMPG IE Y HRIGRTGR GKTG+ATTF+ + +++ DL
Sbjct: 405 TDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDL 464
Query: 630 KQMLIQSNSPVPPELAK 646
K +L ++ +PP LA+
Sbjct: 465 KHLLQEAKQRIPPVLAE 481
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 335 (123.0 bits), Expect = 1.1e-57, Sum P(2) = 1.1e-57
Identities = 71/168 (42%), Positives = 99/168 (58%)
Query: 452 TYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDE 511
T +FSATMP + R+A +++ P + + I Q + ++E +KF L RLLD
Sbjct: 178 TLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 512 LGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT 571
+ AIVF TK+ D +++ L+ GY +HG +Q +R L F+ VLVAT
Sbjct: 238 QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297
Query: 572 DVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619
DVA RG+DI V HV N+D+P + E Y HRIGRTGRAGK G+A F+T
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVT 345
Score = 321 (118.1 bits), Expect = 1.1e-57, Sum P(2) = 1.1e-57
Identities = 69/184 (37%), Positives = 111/184 (60%)
Query: 250 MRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 309
M + E L+ LL++VE +G++ +PIQ IP LQ +D+IG A+TG+GKTAAF LP+
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60
Query: 310 LTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEE 369
L + + + +G +V+APTRELA Q+ EE K + ++++ I GGQ I
Sbjct: 61 LDKVD-----THKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINR 112
Query: 370 QGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAM 429
Q +++ +++ TPGR++D + R+ L VVLDEAD M++MGF + +L +
Sbjct: 113 QIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV 172
Query: 430 PSSN 433
P ++
Sbjct: 173 PETH 176
Score = 37 (18.1 bits), Expect = 7.4e-28, Sum P(2) = 7.4e-28
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 132 EDTSRDMNALYQNPH 146
+D +R + AL ++PH
Sbjct: 108 QDINRQIRALKKHPH 122
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 335 (123.0 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 71/168 (42%), Positives = 99/168 (58%)
Query: 452 TYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDE 511
T +FSATMP + R+A +++ P + + I Q + ++E +KF L RLLD
Sbjct: 178 TLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 512 LGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT 571
+ AIVF TK+ D +++ L+ GY +HG +Q +R L F+ VLVAT
Sbjct: 238 QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297
Query: 572 DVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619
DVA RG+DI V HV N+D+P + E Y HRIGRTGRAGK G+A F+T
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVT 345
Score = 321 (118.1 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 69/184 (37%), Positives = 111/184 (60%)
Query: 250 MRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 309
M + E L+ LL++VE +G++ +PIQ IP LQ +D+IG A+TG+GKTAAF LP+
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60
Query: 310 LTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEE 369
L + + + +G +V+APTRELA Q+ EE K + ++++ I GGQ I
Sbjct: 61 LDKVD-----THKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINR 112
Query: 370 QGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAM 429
Q +++ +++ TPGR++D + R+ L VVLDEAD M++MGF + +L +
Sbjct: 113 QIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV 172
Query: 430 PSSN 433
P ++
Sbjct: 173 PETH 176
Score = 37 (18.1 bits), Expect = 8.0e-28, Sum P(2) = 8.0e-28
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 132 EDTSRDMNALYQNPH 146
+D +R + AL ++PH
Sbjct: 108 QDINRQIRALKKHPH 122
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 335 (123.0 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 71/168 (42%), Positives = 99/168 (58%)
Query: 452 TYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDE 511
T +FSATMP + R+A +++ P + + I Q + ++E +KF L RLLD
Sbjct: 178 TLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 512 LGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT 571
+ AIVF TK+ D +++ L+ GY +HG +Q +R L F+ VLVAT
Sbjct: 238 QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297
Query: 572 DVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619
DVA RG+DI V HV N+D+P + E Y HRIGRTGRAGK G+A F+T
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVT 345
Score = 321 (118.1 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 69/184 (37%), Positives = 111/184 (60%)
Query: 250 MRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 309
M + E L+ LL++VE +G++ +PIQ IP LQ +D+IG A+TG+GKTAAF LP+
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60
Query: 310 LTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEE 369
L + + + +G +V+APTRELA Q+ EE K + ++++ I GGQ I
Sbjct: 61 LDKVD-----THKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINR 112
Query: 370 QGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAM 429
Q +++ +++ TPGR++D + R+ L VVLDEAD M++MGF + +L +
Sbjct: 113 QIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV 172
Query: 430 PSSN 433
P ++
Sbjct: 173 PETH 176
Score = 37 (18.1 bits), Expect = 8.0e-28, Sum P(2) = 8.0e-28
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 132 EDTSRDMNALYQNPH 146
+D +R + AL ++PH
Sbjct: 108 QDINRQIRALKKHPH 122
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 335 (123.0 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 71/168 (42%), Positives = 99/168 (58%)
Query: 452 TYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDE 511
T +FSATMP + R+A +++ P + + I Q + ++E +KF L RLLD
Sbjct: 178 TLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 512 LGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT 571
+ AIVF TK+ D +++ L+ GY +HG +Q +R L F+ VLVAT
Sbjct: 238 QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297
Query: 572 DVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619
DVA RG+DI V HV N+D+P + E Y HRIGRTGRAGK G+A F+T
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVT 345
Score = 321 (118.1 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 69/184 (37%), Positives = 111/184 (60%)
Query: 250 MRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 309
M + E L+ LL++VE +G++ +PIQ IP LQ +D+IG A+TG+GKTAAF LP+
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60
Query: 310 LTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEE 369
L + + + +G +V+APTRELA Q+ EE K + ++++ I GGQ I
Sbjct: 61 LDKVD-----THKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINR 112
Query: 370 QGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAM 429
Q +++ +++ TPGR++D + R+ L VVLDEAD M++MGF + +L +
Sbjct: 113 QIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV 172
Query: 430 PSSN 433
P ++
Sbjct: 173 PETH 176
Score = 37 (18.1 bits), Expect = 8.0e-28, Sum P(2) = 8.0e-28
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 132 EDTSRDMNALYQNPH 146
+D +R + AL ++PH
Sbjct: 108 QDINRQIRALKKHPH 122
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 335 (123.0 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 71/168 (42%), Positives = 99/168 (58%)
Query: 452 TYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDE 511
T +FSATMP + R+A +++ P + + I Q + ++E +KF L RLLD
Sbjct: 178 TLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 512 LGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT 571
+ AIVF TK+ D +++ L+ GY +HG +Q +R L F+ VLVAT
Sbjct: 238 QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297
Query: 572 DVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619
DVA RG+DI V HV N+D+P + E Y HRIGRTGRAGK G+A F+T
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVT 345
Score = 321 (118.1 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 69/184 (37%), Positives = 111/184 (60%)
Query: 250 MRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 309
M + E L+ LL++VE +G++ +PIQ IP LQ +D+IG A+TG+GKTAAF LP+
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60
Query: 310 LTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEE 369
L + + + +G +V+APTRELA Q+ EE K + ++++ I GGQ I
Sbjct: 61 LDKVD-----THKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINR 112
Query: 370 QGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAM 429
Q +++ +++ TPGR++D + R+ L VVLDEAD M++MGF + +L +
Sbjct: 113 QIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV 172
Query: 430 PSSN 433
P ++
Sbjct: 173 PETH 176
Score = 37 (18.1 bits), Expect = 8.0e-28, Sum P(2) = 8.0e-28
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 132 EDTSRDMNALYQNPH 146
+D +R + AL ++PH
Sbjct: 108 QDINRQIRALKKHPH 122
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 335 (123.0 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 71/168 (42%), Positives = 99/168 (58%)
Query: 452 TYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDE 511
T +FSATMP + R+A +++ P + + I Q + ++E +KF L RLLD
Sbjct: 178 TLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 512 LGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT 571
+ AIVF TK+ D +++ L+ GY +HG +Q +R L F+ VLVAT
Sbjct: 238 QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297
Query: 572 DVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619
DVA RG+DI V HV N+D+P + E Y HRIGRTGRAGK G+A F+T
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVT 345
Score = 321 (118.1 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 69/184 (37%), Positives = 111/184 (60%)
Query: 250 MRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 309
M + E L+ LL++VE +G++ +PIQ IP LQ +D+IG A+TG+GKTAAF LP+
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60
Query: 310 LTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEE 369
L + + + +G +V+APTRELA Q+ EE K + ++++ I GGQ I
Sbjct: 61 LDKVD-----THKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINR 112
Query: 370 QGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAM 429
Q +++ +++ TPGR++D + R+ L VVLDEAD M++MGF + +L +
Sbjct: 113 QIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV 172
Query: 430 PSSN 433
P ++
Sbjct: 173 PETH 176
Score = 37 (18.1 bits), Expect = 8.0e-28, Sum P(2) = 8.0e-28
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 132 EDTSRDMNALYQNPH 146
+D +R + AL ++PH
Sbjct: 108 QDINRQIRALKKHPH 122
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 335 (123.0 bits), Expect = 1.4e-57, Sum P(2) = 1.4e-57
Identities = 71/168 (42%), Positives = 99/168 (58%)
Query: 452 TYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDE 511
T +FSATMP + R+A +++ P + + I Q + ++E +KF L RLLD
Sbjct: 178 TLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 512 LGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT 571
+ AIVF TK+ D +++ L+ GY +HG +Q +R L F+ VLVAT
Sbjct: 238 QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVAT 297
Query: 572 DVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619
DVA RG+DI V HV N+D+P + E Y HRIGRTGRAGK G+A F+T
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVT 345
Score = 321 (118.1 bits), Expect = 1.4e-57, Sum P(2) = 1.4e-57
Identities = 69/184 (37%), Positives = 111/184 (60%)
Query: 250 MRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 309
M + E L+ LL++VE +G++ +PIQ IP LQ +D+IG A+TG+GKTAAF LP+
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60
Query: 310 LTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEE 369
L + + + +G +V+APTRELA Q+ EE K + ++++ I GGQ I
Sbjct: 61 LDKVD-----THKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINR 112
Query: 370 QGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAM 429
Q +++ +++ TPGR++D + R+ L VVLDEAD M++MGF + +L +
Sbjct: 113 QIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV 172
Query: 430 PSSN 433
P ++
Sbjct: 173 PETH 176
Score = 37 (18.1 bits), Expect = 9.2e-28, Sum P(2) = 9.2e-28
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 132 EDTSRDMNALYQNPH 146
+D +R + AL ++PH
Sbjct: 108 QDINRQIRALKKHPH 122
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 136/322 (42%), Positives = 189/322 (58%)
Query: 327 GPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPG 386
GP +V++PTRELA QI+EE VKF I + GG Q + +G ++V+ATPG
Sbjct: 230 GPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPG 289
Query: 387 RLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEK 446
RL D LE R L Q +Y+VLDEADRM+DMGFEPQ+ ++ +P+
Sbjct: 290 RLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTK-------------- 335
Query: 447 RIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGK--ATELISQHVVMMKESEKFSR 504
R T M++AT P V ++A L NP V IG + A + I+QH+ ++ EK R
Sbjct: 336 ---RQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRR 392
Query: 505 LQRLL--DELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRT 562
L+++L E G K I+F +TK+ D + +NL + + +HG KSQ +R+ L FR+
Sbjct: 393 LEQILRSQEPGSKV-IIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRS 450
Query: 563 KRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHD 622
R VLVATDVA RG+D+ D+ V+NYD P +E Y HRIGRTGRAG TG A TF D
Sbjct: 451 GRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQD 510
Query: 623 TDVFYDLKQMLIQSNSPVPPEL 644
+ DL ++L +N VPP++
Sbjct: 511 SKHASDLIKILEGANQRVPPQI 532
Score = 395 (144.1 bits), Expect = 1.0e-34, P = 1.0e-34
Identities = 81/194 (41%), Positives = 121/194 (62%)
Query: 239 ISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETG 298
I+ G ++P P+ ++ PELLR V G+ P+PIQ + P+ +Q RD++ IA+TG
Sbjct: 146 ITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTG 205
Query: 299 SGKTAAFVLPMLTYISRLPPISEENEAE-GPYAVVMAPTRELAQQIEEETVKFAHYLGIK 357
SGKT +++P ++ R+ N++ GP +V++PTRELA QI+EE VKF I
Sbjct: 206 SGKTLGYLIPGFLHLQRI-----RNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRIS 260
Query: 358 VVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMG 417
+ GG Q + +G ++V+ATPGRL D LE R L Q +Y+VLDEADRM+DMG
Sbjct: 261 CTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMG 320
Query: 418 FEPQVVGVLDAMPS 431
FEPQ+ ++ +P+
Sbjct: 321 FEPQIRKIVKEIPT 334
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 135/344 (39%), Positives = 200/344 (58%)
Query: 324 EAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIA 383
+ GP +V+ PTRELA Q+E E K+ Y G+K V I GG + + Q + +G +++IA
Sbjct: 272 QRNGPGMLVLTPTRELALQVEAECSKYL-YKGLKSVCIYGGGNRKGQIQDVTKGVDIIIA 330
Query: 384 TPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEEL 443
TPGRL D + L Y+VLDEAD+M+D+GFE Q++ +L +++P+
Sbjct: 331 TPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKIL-----LDVRPD------ 379
Query: 444 DEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKAT-ELISQHVVMMKESEKF 502
R T M +A+ P + RLA+ YL+ P++V +GT T + Q++++ E EK
Sbjct: 380 ------RQTVMTTASWPDSTRRLAQSYLKQPMIVYVGTLDLVTVNTVKQNIIVTTEEEKR 433
Query: 503 SRLQRLLDELGDKT-AIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFR 561
S ++ L L K IVFV+ K AD ++ +L G V +LHG + Q R+ +LE FR
Sbjct: 434 SLVKEFLQSLSPKDKVIVFVSRKLVADDLSSDLSIQGIPVQSLHGDREQSDRDQALEDFR 493
Query: 562 TKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFH 621
T R +L+ATD+A RG+D+ DV HV NY+ P NIE Y HR+GRTGRAGK G + T +T
Sbjct: 494 TGRVKILIATDLAARGLDVSDVTHVYNYNFPRNIEEYVHRVGRTGRAGKIGESITLVTQD 553
Query: 622 DTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPGTIPDRPPRRN 665
D + +L ++L ++N VPP L + A +FK P N
Sbjct: 554 DWKIADELIKILQRANQIVPPSL-RSMADRFKKQHKQKNQPHSN 596
Score = 369 (135.0 bits), Expect = 1.4e-31, P = 1.4e-31
Identities = 85/217 (39%), Positives = 133/217 (61%)
Query: 222 LEEMTERDWRIFREDFNISY----KGSK--IPRPMRNWAEG-KLTPELLRAVERVGYKNP 274
L E WR +E+FNI +G K IP+P + + + PE+++++ R G++ P
Sbjct: 167 LSEAQVEIWR--KENFNIRCDDLTEGEKRPIPKPTCTFEDAFQQYPEIMQSIRRAGFQKP 224
Query: 275 SPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMA 334
+PIQ + P+ LQ D+IGIA+TG+GKT ++++P +I P+S + + GP +V+
Sbjct: 225 TPIQSQSWPIILQGIDLIGIAQTGTGKTLSYLMPGFIHIHS-QPVSRK-QRNGPGMLVLT 282
Query: 335 PTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLER 394
PTRELA Q+E E K+ Y G+K V I GG + + Q + +G +++IATPGRL D
Sbjct: 283 PTRELALQVEAECSKYL-YKGLKSVCIYGGGNRKGQIQDVTKGVDIIIATPGRLNDLQMN 341
Query: 395 RYAVLNQCNYVVLDEADRMIDMGFEPQVVGVL-DAMP 430
+ L Y+VLDEAD+M+D+GFE Q++ +L D P
Sbjct: 342 NFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRP 378
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 147/417 (35%), Positives = 226/417 (54%)
Query: 234 REDFNISYKGSKI-PRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVI 292
R I+ +G + P+P+ + ++ + + P+PIQ PL L RD++
Sbjct: 74 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 133
Query: 293 GIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH 352
GIA+TGSGKT A++LP + +I+ P + +GP +V+APTRELAQQ+++ +
Sbjct: 134 GIAQTGSGKTLAYLLPAIVHINHQPYLER---GDGPICLVLAPTRELAQQVQQVADDYGK 190
Query: 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR 412
+K I GG Q + +G E+ IATPGRLID LE L +C Y+VLDEADR
Sbjct: 191 CSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADR 250
Query: 413 MIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR 472
M+DMGFEPQ+ ++D ++P+ + ++ T+ + E R Y +
Sbjct: 251 MLDMGFEPQIRKIVD-----QIRPDRQT------LMWSATW--PKEVRQLAEDFLRDYTQ 297
Query: 473 NPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDEL-GDKT--AIVFVNTKKNADM 529
V A I Q V + ESEK +L +L++E+ +K I+FV TK+ D
Sbjct: 298 INVG---NLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDD 354
Query: 530 VAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGI--DIPDVAHVI 587
+ + + + G+ +HG KSQ +R+ L FR+ + +L+ATDVA RG+ D+ DV VI
Sbjct: 355 LTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLGFDVEDVKFVI 414
Query: 588 NYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPEL 644
NYD P + E Y HRIGRT R+ G A TF T + +L ++L ++N + P+L
Sbjct: 415 NYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKL 471
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 333 (122.3 bits), Expect = 2.5e-57, Sum P(2) = 2.5e-57
Identities = 69/174 (39%), Positives = 110/174 (63%)
Query: 258 LTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 317
L+ L++ V ++GY+ P+ IQ AIP+ LQ RD+I A+TG+GKTA+FVLP+L + +
Sbjct: 8 LSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLRQ-- 65
Query: 318 PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 377
+ + A+++ PTRELA Q+ E+ ++ G+K +++ GG + Q R+ G
Sbjct: 66 --GQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDG 123
Query: 378 CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 431
+V++ATPGRL+D +R + VVLDEADRM+DMGF + ++D +PS
Sbjct: 124 VDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPS 177
Score = 285 (105.4 bits), Expect = 2.5e-57, Sum P(2) = 2.5e-57
Identities = 62/166 (37%), Positives = 94/166 (56%)
Query: 454 MFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELG 513
+FSAT+ V LA+ +R+P ++I + ISQ ++ + + K + L L++E
Sbjct: 183 LFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQ 242
Query: 514 DKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV 573
A++F+ TK A + L+K G H G+SQ R LE F++ + LVAT V
Sbjct: 243 WDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGV 302
Query: 574 AGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619
A RGIDI ++ V+NYD+P + Y HRIGRTGRA G A +F++
Sbjct: 303 AARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVS 348
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 333 (122.3 bits), Expect = 2.5e-57, Sum P(2) = 2.5e-57
Identities = 69/174 (39%), Positives = 110/174 (63%)
Query: 258 LTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 317
L+ L++ V ++GY+ P+ IQ AIP+ LQ RD+I A+TG+GKTA+FVLP+L + +
Sbjct: 8 LSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLRQ-- 65
Query: 318 PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 377
+ + A+++ PTRELA Q+ E+ ++ G+K +++ GG + Q R+ G
Sbjct: 66 --GQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDG 123
Query: 378 CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 431
+V++ATPGRL+D +R + VVLDEADRM+DMGF + ++D +PS
Sbjct: 124 VDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPS 177
Score = 285 (105.4 bits), Expect = 2.5e-57, Sum P(2) = 2.5e-57
Identities = 62/166 (37%), Positives = 94/166 (56%)
Query: 454 MFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELG 513
+FSAT+ V LA+ +R+P ++I + ISQ ++ + + K + L L++E
Sbjct: 183 LFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQ 242
Query: 514 DKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV 573
A++F+ TK A + L+K G H G+SQ R LE F++ + LVAT V
Sbjct: 243 WDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGV 302
Query: 574 AGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619
A RGIDI ++ V+NYD+P + Y HRIGRTGRA G A +F++
Sbjct: 303 AARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVS 348
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 309 (113.8 bits), Expect = 1.3e-56, Sum P(2) = 1.3e-56
Identities = 70/183 (38%), Positives = 103/183 (56%)
Query: 441 EELDEKRIY----RTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMM 496
EE+D+ Y + T +FSAT + ++++ L P +V I KA + + Q V +
Sbjct: 169 EEIDQITQYLPKTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGV 228
Query: 497 KESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREIS 556
K L+ K +VF TK+ AD +AK + K G + +HG KSQ RE +
Sbjct: 229 DADRKRELTSFLIGSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKA 288
Query: 557 LEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 616
L F+ + L+ATDVA RGIDI ++HVINY++P N E Y HRIGRT RAG +G+A +
Sbjct: 289 LHEFKEGKVRALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVS 348
Query: 617 FLT 619
++
Sbjct: 349 LVS 351
Score = 304 (112.1 bits), Expect = 1.3e-56, Sum P(2) = 1.3e-56
Identities = 65/175 (37%), Positives = 101/175 (57%)
Query: 258 LTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 317
L LL+A+ Y P+ IQ +IPL L + DV+ A+TG+GKTAAF LP+L + +
Sbjct: 12 LDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLISVQ 71
Query: 318 PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 377
P E A +V+ PTRELAQQ+ + + + + + GG S ++Q ++ G
Sbjct: 72 PCKPELRA-----LVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVG 126
Query: 378 CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 432
+++IATPGRL+D L L+ +V DEADRM+DMGF+ ++ + +P +
Sbjct: 127 VDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKT 181
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 309 (113.8 bits), Expect = 1.3e-56, Sum P(2) = 1.3e-56
Identities = 70/183 (38%), Positives = 103/183 (56%)
Query: 441 EELDEKRIY----RTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMM 496
EE+D+ Y + T +FSAT + ++++ L P +V I KA + + Q V +
Sbjct: 169 EEIDQITQYLPKTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGV 228
Query: 497 KESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREIS 556
K L+ K +VF TK+ AD +AK + K G + +HG KSQ RE +
Sbjct: 229 DADRKRELTSFLIGSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKA 288
Query: 557 LEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 616
L F+ + L+ATDVA RGIDI ++HVINY++P N E Y HRIGRT RAG +G+A +
Sbjct: 289 LHEFKEGKVRALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVS 348
Query: 617 FLT 619
++
Sbjct: 349 LVS 351
Score = 304 (112.1 bits), Expect = 1.3e-56, Sum P(2) = 1.3e-56
Identities = 65/175 (37%), Positives = 101/175 (57%)
Query: 258 LTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 317
L LL+A+ Y P+ IQ +IPL L + DV+ A+TG+GKTAAF LP+L + +
Sbjct: 12 LDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLISVQ 71
Query: 318 PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 377
P E A +V+ PTRELAQQ+ + + + + + GG S ++Q ++ G
Sbjct: 72 PCKPELRA-----LVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVG 126
Query: 378 CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 432
+++IATPGRL+D L L+ +V DEADRM+DMGF+ ++ + +P +
Sbjct: 127 VDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKT 181
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 152/446 (34%), Positives = 241/446 (54%)
Query: 213 VDRHW-SEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGY 271
+ +W + + + E E+D + R+ NI G IP P+ + E K+ ++ + G
Sbjct: 183 IKTNWRAPRYILERDEKDHQKVRDQLNIITDGEDIPPPITTFKEMKIPKPVIDVLLEKGI 242
Query: 272 KNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYI----SRLPPISEENEAEG 327
K PSPIQ+ +P+ L RD+IGIA TGSGKT F LPM+ + +LP I + EG
Sbjct: 243 KKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMVLFALEEECKLPII----QGEG 298
Query: 328 PYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGR 387
P+ +++ P+RELA+Q + F + L GG ++R ++A G
Sbjct: 299 PFGLILCPSRELARQTYDLVNSFTNALHKN-----GGHP------QLR----TLLAIGG- 342
Query: 388 LIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQV-------VGVLDAMPSSNLKPENED 440
ID E+ + + + ++++ R++D+ + ++ +G+ +A +L E++
Sbjct: 343 -IDLREQEH-IFKKGVHMIIATPGRLLDLLNKKKINFKLCKYLGLDEADRLIDLGFEDDI 400
Query: 441 EE-LDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKES 499
LD R T +FSATMP ++ AR L PV V +G AG A ++Q V +K
Sbjct: 401 RSVLDNFTNQRQTLLFSATMPKKIQEFARSALVLPVEVNVGRAGAANLNVTQEVEFVKPE 460
Query: 500 EKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEG 559
K L L + ++F KK+ D + + L ++HG KSQ++RE +++
Sbjct: 461 AKIVYLLECLQKT-PPPVLIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQDERESAIKA 519
Query: 560 FRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619
FR + +VLVATDVA +G+D P++ HVIN+DMP IE Y HRIGRTGR G GVATTF+
Sbjct: 520 FREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFIN 579
Query: 620 FHDTD-VFYDLKQMLIQSNSPVPPEL 644
++T+ + DLK +LI++ VPP L
Sbjct: 580 KNNTESLLLDLKYLLIEAKQKVPPAL 605
>UNIPROTKB|Q8EJQ5 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 138/367 (37%), Positives = 212/367 (57%)
Query: 251 RNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPML 310
+ +A+ L PE+ +A+ G++ +PIQ ++P+ LQ +D+ G A+TG+GKT AF++
Sbjct: 9 QKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATF 68
Query: 311 TYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQ 370
++ I E + P A++MAPTRELA QI ++ + A + +KV + GG+S + Q
Sbjct: 69 NHLLS-SSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQ 127
Query: 371 GFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMP 430
+ QG +++I T GR+ID + + LN VVLDEADRM D+GF + + MP
Sbjct: 128 RKVLDQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMP 187
Query: 431 SSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELIS 490
N D+ L+ +FSAT+ V+ LA ++ +PV V I K ++ I
Sbjct: 188 -------NADQRLN--------MLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIK 232
Query: 491 QHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQ 550
+ + + +K L L++E + AIVF NTK + + + L+ G+RV L G Q
Sbjct: 233 EEIFYPSQEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQ 292
Query: 551 EQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGK 610
++R LE F + ++LVATDVA RG+ I DV+HV NYD+P + E Y HRIGRTGRAG
Sbjct: 293 KKRIRILEQFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGN 352
Query: 611 TGVATTF 617
GV+ +F
Sbjct: 353 KGVSVSF 359
>TIGR_CMR|SO_0407 [details] [associations]
symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 138/367 (37%), Positives = 212/367 (57%)
Query: 251 RNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPML 310
+ +A+ L PE+ +A+ G++ +PIQ ++P+ LQ +D+ G A+TG+GKT AF++
Sbjct: 9 QKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATF 68
Query: 311 TYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQ 370
++ I E + P A++MAPTRELA QI ++ + A + +KV + GG+S + Q
Sbjct: 69 NHLLS-SSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQ 127
Query: 371 GFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMP 430
+ QG +++I T GR+ID + + LN VVLDEADRM D+GF + + MP
Sbjct: 128 RKVLDQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMP 187
Query: 431 SSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELIS 490
N D+ L+ +FSAT+ V+ LA ++ +PV V I K ++ I
Sbjct: 188 -------NADQRLN--------MLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIK 232
Query: 491 QHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQ 550
+ + + +K L L++E + AIVF NTK + + + L+ G+RV L G Q
Sbjct: 233 EEIFYPSQEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQ 292
Query: 551 EQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGK 610
++R LE F + ++LVATDVA RG+ I DV+HV NYD+P + E Y HRIGRTGRAG
Sbjct: 293 KKRIRILEQFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGN 352
Query: 611 TGVATTF 617
GV+ +F
Sbjct: 353 KGVSVSF 359
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 133/324 (41%), Positives = 191/324 (58%)
Query: 324 EAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIA 383
E +GP +V+APTRELA QI+EET KF I + GG S Q +++G E+VIA
Sbjct: 454 EDDGPIVLVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVAALKKGVEIVIA 513
Query: 384 TPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEEL 443
TPGRLID LE L + Y+VLDEADRM+DMGFEPQ+ ++ S ++P+
Sbjct: 514 TPGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKII-----SQIRPD------ 562
Query: 444 DEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIG-TAGKATELISQHVVMMKESEKF 502
R T MFSAT P V+ LA +L + + V IG T A + Q V + ++ EK
Sbjct: 563 ------RQTLMFSATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKK 616
Query: 503 SRLQRLLDELG-DKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFR 561
R+ L +G D+ IVF T+K D + + L G++ +HG KSQ +R+ L F+
Sbjct: 617 ERMLSFLGSVGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFK 676
Query: 562 TKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFH 621
+++ATDVA RG+DI D+ +V+NYD P IE+Y HRIGRT RAG +GV+ + LT
Sbjct: 677 NGMVPIMIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTD 736
Query: 622 DTDVFYDLKQMLIQSNSPVPPELA 645
+ + +L ++L ++ +P EL+
Sbjct: 737 NARLANELIKVLTEAKQKIPIELS 760
Score = 443 (161.0 bits), Expect = 4.6e-41, P = 4.6e-41
Identities = 91/218 (41%), Positives = 137/218 (62%)
Query: 222 LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAA 281
+ + T+ + FR F ++ KG ++P P+ + + L++ + G+ NP+PIQ A
Sbjct: 355 VSKFTQEEIEKFRASFQMTVKGREVPPPIMQFTQAPFPGYLMKEIIGAGFPNPTPIQSQA 414
Query: 282 IPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341
P+ L+ RD+IG+A+TGSGKT AF+LP + +I+ P + E+ +GP +V+APTRELA
Sbjct: 415 WPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLRED---DGPIVLVLAPTRELAL 471
Query: 342 QIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQ 401
QI+EET KF I + GG S Q +++G E+VIATPGRLID LE L +
Sbjct: 472 QIQEETNKFGGTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRLIDILESGKTNLRR 531
Query: 402 CNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE 439
Y+VLDEADRM+DMGFEPQ+ ++ S ++P+ +
Sbjct: 532 VTYLVLDEADRMLDMGFEPQIRKII-----SQIRPDRQ 564
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
Identities = 163/427 (38%), Positives = 223/427 (52%)
Query: 238 NISY---KGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGI 294
NIS+ K S+ P+ + E ++ +L ++ YK P+PIQ A P L RDV+GI
Sbjct: 151 NISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGI 208
Query: 295 AETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYL 354
AETGSGKT AF +P L Y++ L +N++ P +V++PTRELA Q E
Sbjct: 209 AETGSGKTVAFGIPALQYLNGL----SDNKSV-PRVLVVSPTRELAIQTYENLNSLIQGT 263
Query: 355 GIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMI 414
+K V + GG EQ R + V+I TPGRL+D + +Q Y+VLDEADRM+
Sbjct: 264 NLKAVVVYGGAPKSEQA-RAAKNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRML 322
Query: 415 DMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNP 474
D GFE + ++ P P R T FSAT P +V LA +L++P
Sbjct: 323 DTGFEQDIRNIISHTPD----PTRNGS--------RQTVFFSATWPESVRALAATFLKDP 370
Query: 475 VVVTIGTAG-KATELISQHVVMMKESEKFSR-----LQRLLDELG-DKTAIVFVNTKKNA 527
V +TIG+ A++ I+Q V ++ + R L++ L G D ++FV KK A
Sbjct: 371 VKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLYKKEA 430
Query: 528 DMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVI 587
V L + Y V +HG SQ R +L F++ + VLVATDVA RG+DIP V VI
Sbjct: 431 ARVEGTLARK-YNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVI 489
Query: 588 NYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKH 647
N P IE Y HRIGRTGRA G A TF T D +L +L Q+ +P L K
Sbjct: 490 NVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQAKQDIPEGLFKF 549
Query: 648 EASKFKP 654
+ KP
Sbjct: 550 -GTAVKP 555
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 131/329 (39%), Positives = 195/329 (59%)
Query: 327 GPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPG 386
GP +V+ PTRELA Q+ E K++ Y G+K V I GG + + Q I +G +++IATPG
Sbjct: 298 GPGMLVLTPTRELALQVGAECSKYS-YKGLKSVCIYGGGNRKGQIQDIMKGVDIIIATPG 356
Query: 387 RLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEK 446
RL D + L Y+VLDEAD+M+D+GFE Q++ +L +++P+
Sbjct: 357 RLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKIL-----LDVRPD--------- 402
Query: 447 RIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGK-ATELISQHVVMMKESEKFSRL 505
R T M SAT P + +LA YL+ P++V +GT A + + Q++++ E EK S
Sbjct: 403 ---RQTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLF 459
Query: 506 QRLLDELGDKT-AIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKR 564
Q L L K IVFV+ K AD ++ +L G V +LHG + Q RE +L+ F+T +
Sbjct: 460 QEFLQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGK 519
Query: 565 YNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTD 624
+L+ATD+A RG+D+ DV HV NY+ P NIE Y HR+GRTGRAGK G + T +T D
Sbjct: 520 VKILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWK 579
Query: 625 VFYDLKQMLIQSNSPVPPELAKHEASKFK 653
V +L ++L ++N +P +L A ++K
Sbjct: 580 VAGELIEILQRANQSIPEDLLSM-AEQYK 607
Score = 360 (131.8 bits), Expect = 2.0e-30, P = 2.0e-30
Identities = 82/209 (39%), Positives = 130/209 (62%)
Query: 230 WRIFREDFNISYK----GSK--IPRPMRNWAEG-KLTPELLRAVERVGYKNPSPIQMAAI 282
WR +E+FN+ G K IP P+ + + PEL++++++ G++ P+PIQ A
Sbjct: 198 WR--KENFNVMCNDLKDGEKRPIPNPICKFEDAFGPYPELMKSIKKAGFQKPTPIQSQAW 255
Query: 283 PLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQ 342
P+ LQ D+IGIA+TG+GKT ++++P +++ P+S + GP +V+ PTRELA Q
Sbjct: 256 PIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNS-QPVSR-GKRNGPGMLVLTPTRELALQ 313
Query: 343 IEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQC 402
+ E K++ Y G+K V I GG + + Q I +G +++IATPGRL D + L
Sbjct: 314 VGAECSKYS-YKGLKSVCIYGGGNRKGQIQDIMKGVDIIIATPGRLNDLQMNNFVNLRSI 372
Query: 403 NYVVLDEADRMIDMGFEPQVVGVL-DAMP 430
Y+VLDEAD+M+D+GFE Q++ +L D P
Sbjct: 373 TYLVLDEADKMLDLGFEHQIMKILLDVRP 401
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 131/329 (39%), Positives = 195/329 (59%)
Query: 327 GPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPG 386
GP +V+ PTRELA Q+ E K++ Y G+K V I GG + + Q I +G +++IATPG
Sbjct: 289 GPGMLVLTPTRELALQVGAECSKYS-YKGLKSVCIYGGGNRKGQIQDIMKGVDIIIATPG 347
Query: 387 RLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEK 446
RL D + L Y+VLDEAD+M+D+GFE Q++ +L +++P+
Sbjct: 348 RLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKIL-----LDVRPD--------- 393
Query: 447 RIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGK-ATELISQHVVMMKESEKFSRL 505
R T M SAT P + +LA YL+ P++V +GT A + + Q++++ E EK S
Sbjct: 394 ---RQTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLF 450
Query: 506 QRLLDELGDKT-AIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKR 564
Q L L K IVFV+ K AD ++ +L G V +LHG + Q RE +L+ F+T +
Sbjct: 451 QEFLQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGK 510
Query: 565 YNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTD 624
+L+ATD+A RG+D+ DV HV NY+ P NIE Y HR+GRTGRAGK G + T +T D
Sbjct: 511 VKILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWK 570
Query: 625 VFYDLKQMLIQSNSPVPPELAKHEASKFK 653
V +L ++L ++N +P +L A ++K
Sbjct: 571 VAGELIEILQRANQSIPEDLLSM-AEQYK 598
Score = 360 (131.8 bits), Expect = 1.9e-30, P = 1.9e-30
Identities = 82/209 (39%), Positives = 130/209 (62%)
Query: 230 WRIFREDFNISYK----GSK--IPRPMRNWAEG-KLTPELLRAVERVGYKNPSPIQMAAI 282
WR +E+FN+ G K IP P+ + + PEL++++++ G++ P+PIQ A
Sbjct: 189 WR--KENFNVMCNDLKDGEKRPIPNPICKFEDAFGPYPELMKSIKKAGFQKPTPIQSQAW 246
Query: 283 PLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQ 342
P+ LQ D+IGIA+TG+GKT ++++P +++ P+S + GP +V+ PTRELA Q
Sbjct: 247 PIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNS-QPVSR-GKRNGPGMLVLTPTRELALQ 304
Query: 343 IEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQC 402
+ E K++ Y G+K V I GG + + Q I +G +++IATPGRL D + L
Sbjct: 305 VGAECSKYS-YKGLKSVCIYGGGNRKGQIQDIMKGVDIIIATPGRLNDLQMNNFVNLRSI 363
Query: 403 NYVVLDEADRMIDMGFEPQVVGVL-DAMP 430
Y+VLDEAD+M+D+GFE Q++ +L D P
Sbjct: 364 TYLVLDEADKMLDLGFEHQIMKILLDVRP 392
>TAIR|locus:2176192 [details] [associations]
symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
Uniprot:Q9LU46
Length = 591
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 150/436 (34%), Positives = 229/436 (52%)
Query: 222 LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAA 281
+ +M+ + + R+ ++I G IP P++N+ + K +L ++ G P+PIQ+
Sbjct: 117 IRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQG 176
Query: 282 IPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQ 341
+P+ L RD+IGIA TGSGKT FVLPM+ + + EGP +++ P+RELA+
Sbjct: 177 LPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELAR 236
Query: 342 QIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQ 401
Q E +F V +V E G+ + ++ G ID + + V+ +
Sbjct: 237 QTYEVVEQF-------VAPLV------EAGYPPLRS---LLCIGG--ID-MRSQLEVVKR 277
Query: 402 CNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPEN-------ED---EELDEKRIYRT 451
++V+ R+ DM + ++ LDA L + ED E D + R
Sbjct: 278 GVHIVVATPGRLKDMLAKKKMS--LDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQ 335
Query: 452 TYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDE 511
T +FSATMP ++ AR L PV V +G AG A + Q V +K+ K L L +
Sbjct: 336 TLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK 395
Query: 512 LGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT 571
++F K + D + + L G +HGGK QE RE ++ F+ + +VLVAT
Sbjct: 396 TSPPV-LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVAT 454
Query: 572 DVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDV-FYDLK 630
DVA +G+D PD+ HVINYDMP IE Y HRIGRTGR GKTG+ATTF+ + ++ DLK
Sbjct: 455 DVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLK 514
Query: 631 QMLIQSNSPVPPELAK 646
+L ++ +PP LA+
Sbjct: 515 HLLQEAKQRIPPVLAE 530
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 147/383 (38%), Positives = 214/383 (55%)
Query: 271 YKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYA 330
+ P+PIQ + P L +DVIG+AETGSGKT AF +P + I I+ N +
Sbjct: 173 FDKPTPIQSVSWPFLLSGKDVIGVAETGSGKTFAFGVPAINNI-----ITTGN-TKTLSV 226
Query: 331 VVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLID 390
+ ++PTRELA QI + ++ G+ V++ GG S ++Q +I+ VV+ATPGRL+D
Sbjct: 227 LCISPTRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKIKTA-NVVVATPGRLVD 285
Query: 391 CLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYR 450
+ L + NY+VLDEADRM++ GFE + ++ SN N + R
Sbjct: 286 LINDGAINLGKVNYLVLDEADRMLEKGFEEDIKTII-----SNTS--NSE---------R 329
Query: 451 TTYMFSATMPPAVERLARKYLRNPVVVTIGTAGK--ATELISQHVVMMKESEKFSRLQRL 508
T MF+AT P V LA ++ +PV VT+G + A + I+Q V ++ + +K +L +L
Sbjct: 330 QTLMFTATWPKEVRELANNFMNSPVKVTVGDRDELSANKRITQVVEVINKFDKEKKLIQL 389
Query: 509 L-----DELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTK 563
L +E D ++F KK A + L + + V +HG SQ+QR +L F++
Sbjct: 390 LRKYNANESSDNKILIFALYKKEASRIENFLKRNRFSVAAIHGDLSQQQRTAALSAFKSG 449
Query: 564 RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 623
+ N+L+ATDVA RG+DIP+V VIN P IE Y HRIGRTGRAG G A T T +
Sbjct: 450 QSNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVHRIGRTGRAGAKGTAHTLFTEDEK 509
Query: 624 DVFYDLKQMLIQSNSPVPPELAK 646
+ L +L +N PVP EL K
Sbjct: 510 HLSGALCNILRGANQPVPEELLK 532
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 331 (121.6 bits), Expect = 1.1e-55, Sum P(2) = 1.1e-55
Identities = 76/177 (42%), Positives = 107/177 (60%)
Query: 257 KLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRL 316
+L P ++ AV GY+ PS IQ +IP+ L D+IG A+TG+GKTAAF LP+L R+
Sbjct: 12 ELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPIL---HRI 68
Query: 317 PPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYL-GIKVVSIVGGQSIEEQGFRIR 375
P E P A+++APTRELA Q+ +A + G+ VV++ GG + Q IR
Sbjct: 69 DPSKRE-----PQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIR 123
Query: 376 QGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 432
G ++V+ATPGRL D L R VL N++VLDEAD M+ +GF + + AMP +
Sbjct: 124 NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET 180
Score = 310 (114.2 bits), Expect = 1.1e-55, Sum P(2) = 1.1e-55
Identities = 67/171 (39%), Positives = 104/171 (60%)
Query: 450 RTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLL 509
R T +FSAT+P ++ +A ++L++P V I + + I Q +++ +K S + LL
Sbjct: 181 RQTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLL 240
Query: 510 DELGDKTAIV-FVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVL 568
E+ D A++ FV TK+ +A L+ GY+ L+G +Q QRE ++ + R +++
Sbjct: 241 -EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIV 299
Query: 569 VATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619
VATDVA RG+D+P + HV N DMP + E Y HRIGRTGRAG+ G A +T
Sbjct: 300 VATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVT 350
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 135/327 (41%), Positives = 191/327 (58%)
Query: 323 NEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVI 382
++ GP +V+ PTRELA QIE E K++ Y G K + I GG Q + G ++VI
Sbjct: 348 DKRNGPGMLVLTPTRELALQIEAECNKYS-YKGFKSICIYGGGDRNAQIKVVTSGVDIVI 406
Query: 383 ATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEE 442
ATPGRL D L Y+VLDEADRM+DMGFEPQ++ ++ +++P+
Sbjct: 407 ATPGRLNDLQMNELINLRSITYLVLDEADRMLDMGFEPQIMKII-----LDIRPD----- 456
Query: 443 LDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAG-KATELISQHVVMMKESEK 501
R T M SAT PP V RLA+ YL++P++V +GT A + Q V+ ++E EK
Sbjct: 457 -------RQTVMTSATWPPGVRRLAKSYLKDPMMVYVGTLDLAAVNTVQQTVLFVQEDEK 509
Query: 502 ----FSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISL 557
F + R+ E DK ++FV K AD ++ +L G V +LHG + Q RE +L
Sbjct: 510 KDYVFDFIHRM--EPLDKV-LIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEAL 566
Query: 558 EGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 617
+ F+ R +LVATD+A RG+D+ D+ HV NYD P N+E Y HR+GRTGRAG++G + T
Sbjct: 567 QDFKDGRVRILVATDLASRGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESVTL 626
Query: 618 LTFHDTDVFYDLKQMLIQSNSPVPPEL 644
+T D V +L +L +S VP EL
Sbjct: 627 VTREDWRVAAELITILERSGQDVPEEL 653
Score = 357 (130.7 bits), Expect = 7.1e-30, P = 7.1e-30
Identities = 87/202 (43%), Positives = 118/202 (58%)
Query: 232 IFREDFNISYKGSKIPRPMRNWAEGKLT-PELLRAVERVGYKNPSPIQMAAIPLGLQQRD 290
IF +D K + IP P+ + E P ++ + RVG+K P+PIQ A P+ L D
Sbjct: 259 IFVDDLKDGDKRT-IPNPVCTFEEAFAHYPGIMENIVRVGFKKPTPIQSQAWPVVLNGID 317
Query: 291 VIGIAETGSGKTAAFVLPMLTYISRLP-PISEENEAEGPYAVVMAPTRELAQQIEEETVK 349
+IGIA+TG+GKT A++LP ++ P P + N GP +V+ PTRELA QIE E K
Sbjct: 318 LIGIAQTGTGKTLAYLLPGFIHMDGQPMPRDKRN---GPGMLVLTPTRELALQIEAECNK 374
Query: 350 FAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDE 409
++ Y G K + I GG Q + G ++VIATPGRL D L Y+VLDE
Sbjct: 375 YS-YKGFKSICIYGGGDRNAQIKVVTSGVDIVIATPGRLNDLQMNELINLRSITYLVLDE 433
Query: 410 ADRMIDMGFEPQVVGV-LDAMP 430
ADRM+DMGFEPQ++ + LD P
Sbjct: 434 ADRMLDMGFEPQIMKIILDIRP 455
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 578 (208.5 bits), Expect = 2.0e-55, P = 2.0e-55
Identities = 132/325 (40%), Positives = 196/325 (60%)
Query: 321 EENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEV 380
E +GP AV++ PTREL QQI E +F ++ V++ GG S+ EQ +++G E+
Sbjct: 320 ELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEI 379
Query: 381 VIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENED 440
V+ TPGRLID ++++ L + +Y+V DEADRM DMGFE QV + +S+++P+
Sbjct: 380 VVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSI-----ASHVRPD--- 431
Query: 441 EELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESE 500
R T +FSAT +E+LAR L +P+ V G G+A E ++Q V ++
Sbjct: 432 ---------RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGS 482
Query: 501 KFSRL-QRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEG 559
K++ L +RL++ + ++FV K NA+ +A NL + G+ + LHG Q +R +
Sbjct: 483 KWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISD 542
Query: 560 FRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 619
F+ K VLVATDVA RG+DIP + VINYD+ +I+ +THRIGRTGRAG+ GVA T LT
Sbjct: 543 FKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLT 602
Query: 620 FHDTDVFYDLKQMLIQSNSPVPPEL 644
D++ DL + L +N V EL
Sbjct: 603 PKDSNFAGDLVRNLEGANQHVSKEL 627
Score = 403 (146.9 bits), Expect = 5.2e-35, P = 5.2e-35
Identities = 84/220 (38%), Positives = 132/220 (60%)
Query: 220 KKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQM 279
+++ +T + R N+ G+ PRP ++A +L+ + + Y P+PIQ
Sbjct: 222 EEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQC 281
Query: 280 AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339
+P+ L RD+IGIA+TGSGKTAAF+ PML +I E +GP AV++ PTREL
Sbjct: 282 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQ---KELEPGDGPIAVIVCPTREL 338
Query: 340 AQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVL 399
QQI E +F ++ V++ GG S+ EQ +++G E+V+ TPGRLID ++++ L
Sbjct: 339 CQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNL 398
Query: 400 NQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE 439
+ +Y+V DEADRM DMGFE QV + +S+++P+ +
Sbjct: 399 QRVSYLVFDEADRMFDMGFEYQVRSI-----ASHVRPDRQ 433
>UNIPROTKB|G5EHR3 [details] [associations]
symbol:MGCH7_ch7g509 "ATP-dependent RNA helicase DED1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM000230
EMBL:CM001237 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 RefSeq:XP_003720990.1 ProteinModelPortal:G5EHR3
EnsemblFungi:MGG_02762T0 GeneID:2682767 KEGG:mgr:MGG_02762
Uniprot:G5EHR3
Length = 619
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 154/458 (33%), Positives = 239/458 (52%)
Query: 229 DWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQ 288
D+++ RE + +G P + + L P +L+ V+ GYK P+PIQ IP +
Sbjct: 101 DFKVIRE-IAVVQEGPVRVEPALRFEDAGLHPAMLKNVDLCGYKVPTPIQAYCIPAIHKG 159
Query: 289 RDVIGIAETGSGKTAAFVLPMLTYIS---------RLPPISEENEAEGPY-----AVVMA 334
DVIGIA+TGSGKTAAF++P++ + R P+ + GP V++
Sbjct: 160 HDVIGIAQTGSGKTAAFLIPVINKLMGKAKKLAAPRPNPVEYNMDIHGPVRAEPLVVIVC 219
Query: 335 PTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLER 394
PTRELA Q E K + ++ + GG + +Q +I GC+++ ATPGRL+ +++
Sbjct: 220 PTRELAIQAFNEARKLCYRSMLRPGVVYGGGNFMDQIRQIGLGCDILCATPGRLLHFMDK 279
Query: 395 RYAV-LNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTY 453
+ L + YVV+DEAD M+ +E + ++ A ++ +E+ Y
Sbjct: 280 PELLNLQRVRYVVIDEADEMLTADWEEDMKKIMSAGGAA--------QEIK----Y---L 324
Query: 454 MFSATMPPAVERLARKYL-RNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDEL 512
+FSAT P + LAR++L + V + +G AG I Q V+ K L L++ +
Sbjct: 325 LFSATFPKKIRDLAREHLSEDHVQLRVGRAGSTHSNIIQTVIETAPMNKKRALNDLINSM 384
Query: 513 GDKTAIVFVNTKKNADMVAKNL-DKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT 571
+ I+FVN K AD + L ++ T++H ++Q +RE +L FR +LV T
Sbjct: 385 PPQRTIIFVNNKWTADELDDYLYNECKLPCTSMHADRTQREREDALRAFRAGTAPILVTT 444
Query: 572 DVAGRGIDIPDVAHVINYDMP----GNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFY 627
V RGID+ +VAHV+NYD+P G IE YTHRIGRTGR G G+AT+F T D +
Sbjct: 445 GVTARGIDVRNVAHVVNYDLPSMDHGGIEEYTHRIGRTGRIGNKGLATSFYTDRDEAIAS 504
Query: 628 DLKQMLIQSNSPVPPELAKHEASKFKPGTIPDRPPRRN 665
L + ++++N +P +F G IPD R N
Sbjct: 505 VLVRTMLETNQEIP---------EFLSGYIPDGDAREN 533
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 311 (114.5 bits), Expect = 7.7e-55, Sum P(2) = 7.7e-55
Identities = 72/179 (40%), Positives = 106/179 (59%)
Query: 256 GKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISR 315
G +TP L R E + Y P+PIQ AIP RD+I A TGSGKTA F LPML + R
Sbjct: 14 GLITPLLARLAE-LEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQKL-R 71
Query: 316 LPPISEENEAEGPYA--VVMAPTRELAQQIEEETVKFA-HYLG-IKVVSIVGGQSIEEQG 371
S ++G + +V+ PTRELA+Q+ + +A H+ G IK +++ GG S+ Q
Sbjct: 72 EDISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVNIQM 131
Query: 372 FRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMP 430
+R G ++++ATPGRL+D + L++ +VLDEADRM+ +GF ++ +L P
Sbjct: 132 LALRGGVDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALLALTP 190
Score = 304 (112.1 bits), Expect = 7.7e-55, Sum P(2) = 7.7e-55
Identities = 63/173 (36%), Positives = 101/173 (58%)
Query: 450 RTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLL 509
+ T +FSAT P V L ++ L NP+ + + +A +T + Q V + + EK + L L+
Sbjct: 193 KQTLLFSATFPEQVTTLTQELLNNPIEIQLQSADAST--LVQRVFTVNKGEKTAVLAHLI 250
Query: 510 DELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLV 569
+ + A++FVN K + + +A+ L K G HG K Q +R L+GF+ VL+
Sbjct: 251 QQEQWRQALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFKAGDIEVLI 310
Query: 570 ATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHD 622
ATD+A RG+DI + VIN+++P + Y HRIGR+GRAG+ G+A + + D
Sbjct: 311 ATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLIDHED 363
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 152/449 (33%), Positives = 236/449 (52%)
Query: 209 FDMRVDRHWSEKK-LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVE 267
++ + W + + EM+E + R + I +G P+R++ E K +L +
Sbjct: 134 YEQPIKTAWKPPRYIREMSEEEREAVRHELRILVEGETPSPPIRSFREMKFPKGILNGLA 193
Query: 268 RVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEG 327
G KNP+PIQ+ +P L RD+IGIA TGSGKT FVLP++ + EG
Sbjct: 194 AKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEG 253
Query: 328 PYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGR 387
PY +++ P+RELA+Q E HY K + G I + C + P
Sbjct: 254 PYGLIICPSRELAKQTHEI---IQHYS--KHLQACGMPEI--------RSCLAMGGLP-- 298
Query: 388 LIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLD-----AMPSSNLKPENEDEE 442
+ + L+ V+++ ++V+ R++DM + +++ LD M ++ + EE
Sbjct: 299 VSEALD----VISRGVHIVVATPGRLMDM-LDKKIL-TLDMCRYLCMDEADRMIDMGFEE 352
Query: 443 LDEKRIY------RTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMM 496
D + I+ R T +FSATMP ++ AR L PV + +G AG A+ ++Q V +
Sbjct: 353 -DVRTIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYV 411
Query: 497 KESEKFSRLQRLLDELGDKTA---IVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQR 553
K+ K + LLD L KTA ++F K++ D + + L G +HGGK QE+R
Sbjct: 412 KQEAK---VVYLLDCL-QKTAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEER 467
Query: 554 EISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGV 613
+++ +R + +VLVATDVA +G+D P+V HVINYDMP +IE Y HRIGRTGR+ G+
Sbjct: 468 SRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGL 527
Query: 614 ATTFLT-FHDTDVFYDLKQMLIQSNSPVP 641
ATT + + V DLK +LI+ VP
Sbjct: 528 ATTLINKTTEQSVLLDLKHLLIEGKQEVP 556
>UNIPROTKB|Q9KV52 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 133/365 (36%), Positives = 201/365 (55%)
Query: 253 WAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTY 312
+A+ L P+++ +E+ G+ +PIQ A+P+ L +D+ G A+TG+GKT AF+ +
Sbjct: 11 FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
Query: 313 ISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGF 372
+ P E + P A++MAPTRELA QI + G+K GG+S ++Q
Sbjct: 71 LLTTPAAEGRAETQ-PRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129
Query: 373 RIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 432
+++ G +++I T GR+ID ++R LN VVLDEADRM D+GF + + MP
Sbjct: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMP-- 187
Query: 433 NLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQH 492
+P++ R +FSAT+ V+ LA +++ NP V + K I +
Sbjct: 188 --EPKD-----------RLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEE 234
Query: 493 VVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQ 552
+ K + LQ L++E AI+F NTK + + +L +RV L G Q++
Sbjct: 235 LFYPSNEHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKK 294
Query: 553 REISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTG 612
RE LE F ++LVATDVA RG+ IP V HV NYD+P + E Y HRIGRTGRAG +G
Sbjct: 295 RERILEQFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASG 354
Query: 613 VATTF 617
+ +F
Sbjct: 355 HSISF 359
>TIGR_CMR|VC_0305 [details] [associations]
symbol:VC_0305 "ATP-dependent RNA helicase RhlB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 133/365 (36%), Positives = 201/365 (55%)
Query: 253 WAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTY 312
+A+ L P+++ +E+ G+ +PIQ A+P+ L +D+ G A+TG+GKT AF+ +
Sbjct: 11 FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
Query: 313 ISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGF 372
+ P E + P A++MAPTRELA QI + G+K GG+S ++Q
Sbjct: 71 LLTTPAAEGRAETQ-PRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129
Query: 373 RIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 432
+++ G +++I T GR+ID ++R LN VVLDEADRM D+GF + + MP
Sbjct: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMP-- 187
Query: 433 NLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQH 492
+P++ R +FSAT+ V+ LA +++ NP V + K I +
Sbjct: 188 --EPKD-----------RLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEE 234
Query: 493 VVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQ 552
+ K + LQ L++E AI+F NTK + + +L +RV L G Q++
Sbjct: 235 LFYPSNEHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKK 294
Query: 553 REISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTG 612
RE LE F ++LVATDVA RG+ IP V HV NYD+P + E Y HRIGRTGRAG +G
Sbjct: 295 RERILEQFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASG 354
Query: 613 VATTF 617
+ +F
Sbjct: 355 HSISF 359
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
Identities = 151/414 (36%), Positives = 210/414 (50%)
Query: 261 ELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPIS 320
E++RA+ G K P IQ +PL L DVIG A TG GKT AF +P+L I+
Sbjct: 20 EIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQRITSGDGTR 79
Query: 321 EENEAEGPYAVVMAPTRELAQQIEEETVKFAHYL--G------------IKVVSIVGGQS 366
A P A+V+ PTREL Q+ ++ YL G + VVSI GG+
Sbjct: 80 PLTGA--PRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYGGRP 137
Query: 367 IEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVL 426
E Q +R G +VV+ TPGRL+D ++ + L + +VLDEAD M+D+GF P + +L
Sbjct: 138 YEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERIL 197
Query: 427 DAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKAT 486
+P+ R + +FSATMP + LAR ++ P + +
Sbjct: 198 RQIPAD-----------------RQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSA 240
Query: 487 --ELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTL 544
+ Q V +K + R+L ++F TK+ A VA L + G+ V +
Sbjct: 241 VHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAV 300
Query: 545 HGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGR 604
HG Q RE +L+ FRT +VLVATDVA RGIDI DV HVINY P + +MY HRIGR
Sbjct: 301 HGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGR 360
Query: 605 TGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPGTIP 658
TGRAG+TGVA T + + + + + Q L SP P E + + IP
Sbjct: 361 TGRAGRTGVAVTLVDWDELPRWSMIDQAL-GLGSPDPAETYSNSPHLYAELAIP 413
>WB|WBGene00001599 [details] [associations]
symbol:glh-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 572 (206.4 bits), Expect = 1.1e-54, P = 1.1e-54
Identities = 150/427 (35%), Positives = 224/427 (52%)
Query: 236 DFNISYKGSKIP---RPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVI 292
D + K P + + ++E L + + V GY +PIQ +PL Q D++
Sbjct: 534 DAEVKITSDKKPVGVKTCKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIM 593
Query: 293 GIAETGSGKTAAFVLPMLTYISRLPPISEENEA-EG---PYAVVMAPTRELAQQIEEETV 348
A+TGSGKTAAF+LP++ +RL ++ N A EG P +++ PTREL QI E
Sbjct: 594 ACAQTGSGKTAAFLLPIM---ARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGR 650
Query: 349 KFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLD 408
KFA+ +++ + GG ++ +I +G +++ T GR+ E L++C + VLD
Sbjct: 651 KFAYQTMMEIRPVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLD 710
Query: 409 EADRMID-MGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLA 467
EADRMID MGF + D + + P+ E+ R T MFSAT P +V+ A
Sbjct: 711 EADRMIDAMGFGTDI----DTIVNYESMPKKEN---------RQTLMFSATFPDSVQEAA 757
Query: 468 RKYLRNP-VVVTIGTAGKATELISQHVVMMKESEKFSRLQRLL------------DELGD 514
R +L+ +++ I G A + + Q SEK +L +L E+
Sbjct: 758 RNHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSEKKDKLLEILGIDIDSYTTEKNSEVYT 817
Query: 515 KTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVA 574
K IVFV+ + AD +A L T+HG + Q +R +L FR VL+AT VA
Sbjct: 818 KKTIVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVA 877
Query: 575 GRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLI 634
RG+DI V HVINYDMP NI+ Y HRIGRTGR G G AT+F++ D ++ +L ++L
Sbjct: 878 ERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATSFIS-EDCNLLSELVRVLS 936
Query: 635 QSNSPVP 641
++ VP
Sbjct: 937 DADQLVP 943
>UNIPROTKB|Q966L9 [details] [associations]
symbol:glh-2 "ATP-dependent RNA helicase glh-2"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 572 (206.4 bits), Expect = 1.1e-54, P = 1.1e-54
Identities = 150/427 (35%), Positives = 224/427 (52%)
Query: 236 DFNISYKGSKIP---RPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVI 292
D + K P + + ++E L + + V GY +PIQ +PL Q D++
Sbjct: 534 DAEVKITSDKKPVGVKTCKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIM 593
Query: 293 GIAETGSGKTAAFVLPMLTYISRLPPISEENEA-EG---PYAVVMAPTRELAQQIEEETV 348
A+TGSGKTAAF+LP++ +RL ++ N A EG P +++ PTREL QI E
Sbjct: 594 ACAQTGSGKTAAFLLPIM---ARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGR 650
Query: 349 KFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLD 408
KFA+ +++ + GG ++ +I +G +++ T GR+ E L++C + VLD
Sbjct: 651 KFAYQTMMEIRPVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLD 710
Query: 409 EADRMID-MGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLA 467
EADRMID MGF + D + + P+ E+ R T MFSAT P +V+ A
Sbjct: 711 EADRMIDAMGFGTDI----DTIVNYESMPKKEN---------RQTLMFSATFPDSVQEAA 757
Query: 468 RKYLRNP-VVVTIGTAGKATELISQHVVMMKESEKFSRLQRLL------------DELGD 514
R +L+ +++ I G A + + Q SEK +L +L E+
Sbjct: 758 RNHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSEKKDKLLEILGIDIDSYTTEKNSEVYT 817
Query: 515 KTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVA 574
K IVFV+ + AD +A L T+HG + Q +R +L FR VL+AT VA
Sbjct: 818 KKTIVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVA 877
Query: 575 GRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLI 634
RG+DI V HVINYDMP NI+ Y HRIGRTGR G G AT+F++ D ++ +L ++L
Sbjct: 878 ERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATSFIS-EDCNLLSELVRVLS 936
Query: 635 QSNSPVP 641
++ VP
Sbjct: 937 DADQLVP 943
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 569 (205.4 bits), Expect = 1.8e-54, P = 1.8e-54
Identities = 132/326 (40%), Positives = 196/326 (60%)
Query: 321 EENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEV 380
E +GP AV++ PTREL QQI E +F ++ V++ GG S+ EQ +++G E+
Sbjct: 320 ELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEI 379
Query: 381 VIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENED 440
V+ TPGRLID ++++ L + +Y+V DEADRM DMGFE QV + +S+++P+
Sbjct: 380 VVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSI-----ASHVRPD--- 431
Query: 441 EELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKES- 499
R T +FSAT +E+LAR L +P+ V G G+A E ++Q V ++
Sbjct: 432 ---------RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGP 482
Query: 500 EKFSRL-QRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLE 558
K++ L +RL++ + ++FV K NA+ +A NL + G+ + LHG Q +R +
Sbjct: 483 SKWNWLTRRLVEFTSSGSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVIS 542
Query: 559 GFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFL 618
F+ K VLVATDVA RG+DIP + VINYD+ +I+ +THRIGRTGRAG+ GVA T L
Sbjct: 543 DFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602
Query: 619 TFHDTDVFYDLKQMLIQSNSPVPPEL 644
T D++ DL + L +N V EL
Sbjct: 603 TPKDSNFAGDLVRNLEGANQHVSKEL 628
Score = 403 (146.9 bits), Expect = 5.0e-35, P = 5.0e-35
Identities = 84/220 (38%), Positives = 132/220 (60%)
Query: 220 KKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQM 279
+++ +T + R N+ G+ PRP ++A +L+ + + Y P+PIQ
Sbjct: 222 EEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQC 281
Query: 280 AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339
+P+ L RD+IGIA+TGSGKTAAF+ PML +I E +GP AV++ PTREL
Sbjct: 282 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQ---KELEPGDGPIAVIVCPTREL 338
Query: 340 AQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVL 399
QQI E +F ++ V++ GG S+ EQ +++G E+V+ TPGRLID ++++ L
Sbjct: 339 CQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNL 398
Query: 400 NQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE 439
+ +Y+V DEADRM DMGFE QV + +S+++P+ +
Sbjct: 399 QRVSYLVFDEADRMFDMGFEYQVRSI-----ASHVRPDRQ 433
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 569 (205.4 bits), Expect = 1.8e-54, P = 1.8e-54
Identities = 132/326 (40%), Positives = 196/326 (60%)
Query: 321 EENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEV 380
E +GP AV++ PTREL QQI E +F ++ V++ GG S+ EQ +++G E+
Sbjct: 320 ELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEI 379
Query: 381 VIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENED 440
V+ TPGRLID ++++ L + +Y+V DEADRM DMGFE QV + +S+++P+
Sbjct: 380 VVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSI-----ASHVRPD--- 431
Query: 441 EELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKES- 499
R T +FSAT +E+LAR L +P+ V G G+A E ++Q V ++
Sbjct: 432 ---------RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGP 482
Query: 500 EKFSRL-QRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLE 558
K++ L +RL++ + ++FV K NA+ +A NL + G+ + LHG Q +R +
Sbjct: 483 SKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVIS 542
Query: 559 GFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFL 618
F+ K VLVATDVA RG+DIP + VINYD+ +I+ +THRIGRTGRAG+ GVA T L
Sbjct: 543 DFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602
Query: 619 TFHDTDVFYDLKQMLIQSNSPVPPEL 644
T D++ DL + L +N V EL
Sbjct: 603 TPKDSNFAGDLVRNLEGANQHVSKEL 628
Score = 403 (146.9 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 84/220 (38%), Positives = 132/220 (60%)
Query: 220 KKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQM 279
+++ +T + R N+ G+ PRP ++A +L+ + + Y P+PIQ
Sbjct: 222 EEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQC 281
Query: 280 AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339
+P+ L RD+IGIA+TGSGKTAAF+ PML +I E +GP AV++ PTREL
Sbjct: 282 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQ---KELEPGDGPIAVIVCPTREL 338
Query: 340 AQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVL 399
QQI E +F ++ V++ GG S+ EQ +++G E+V+ TPGRLID ++++ L
Sbjct: 339 CQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNL 398
Query: 400 NQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE 439
+ +Y+V DEADRM DMGFE QV + +S+++P+ +
Sbjct: 399 QRVSYLVFDEADRMFDMGFEYQVRSI-----ASHVRPDRQ 433
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 569 (205.4 bits), Expect = 1.9e-54, P = 1.9e-54
Identities = 132/326 (40%), Positives = 196/326 (60%)
Query: 321 EENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEV 380
E +GP AV++ PTREL QQI E +F ++ V++ GG S+ EQ +++G E+
Sbjct: 320 ELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEI 379
Query: 381 VIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENED 440
V+ TPGRLID ++++ L + +Y+V DEADRM DMGFE QV + +S+++P+
Sbjct: 380 VVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSI-----ASHVRPD--- 431
Query: 441 EELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKES- 499
R T +FSAT +E+LAR L +P+ V G G+A E ++Q V ++
Sbjct: 432 ---------RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGP 482
Query: 500 EKFSRL-QRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLE 558
K++ L +RL++ + ++FV K NA+ +A NL + G+ + LHG Q +R +
Sbjct: 483 SKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVIS 542
Query: 559 GFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFL 618
F+ K VLVATDVA RG+DIP + VINYD+ +I+ +THRIGRTGRAG+ GVA T L
Sbjct: 543 DFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602
Query: 619 TFHDTDVFYDLKQMLIQSNSPVPPEL 644
T D++ DL + L +N V EL
Sbjct: 603 TPKDSNFAGDLVRNLEGANQHVSKEL 628
Score = 403 (146.9 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 84/220 (38%), Positives = 132/220 (60%)
Query: 220 KKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQM 279
+++ +T + R N+ G+ PRP ++A +L+ + + Y P+PIQ
Sbjct: 222 EEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQC 281
Query: 280 AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339
+P+ L RD+IGIA+TGSGKTAAF+ PML +I E +GP AV++ PTREL
Sbjct: 282 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQ---KELEPGDGPIAVIVCPTREL 338
Query: 340 AQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVL 399
QQI E +F ++ V++ GG S+ EQ +++G E+V+ TPGRLID ++++ L
Sbjct: 339 CQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNL 398
Query: 400 NQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE 439
+ +Y+V DEADRM DMGFE QV + +S+++P+ +
Sbjct: 399 QRVSYLVFDEADRMFDMGFEYQVRSI-----ASHVRPDRQ 433
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 569 (205.4 bits), Expect = 1.9e-54, P = 1.9e-54
Identities = 132/326 (40%), Positives = 196/326 (60%)
Query: 321 EENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEV 380
E +GP AV++ PTREL QQI E +F ++ V++ GG S+ EQ +++G E+
Sbjct: 320 ELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEI 379
Query: 381 VIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENED 440
V+ TPGRLID ++++ L + +Y+V DEADRM DMGFE QV + +S+++P+
Sbjct: 380 VVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSI-----ASHVRPD--- 431
Query: 441 EELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKES- 499
R T +FSAT +E+LAR L +P+ V G G+A E ++Q V ++
Sbjct: 432 ---------RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGP 482
Query: 500 EKFSRL-QRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLE 558
K++ L +RL++ + ++FV K NA+ +A NL + G+ + LHG Q +R +
Sbjct: 483 SKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVIS 542
Query: 559 GFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFL 618
F+ K VLVATDVA RG+DIP + VINYD+ +I+ +THRIGRTGRAG+ GVA T L
Sbjct: 543 DFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602
Query: 619 TFHDTDVFYDLKQMLIQSNSPVPPEL 644
T D++ DL + L +N V EL
Sbjct: 603 TPKDSNFAGDLVRNLEGANQHVSKEL 628
Score = 391 (142.7 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 81/197 (41%), Positives = 123/197 (62%)
Query: 243 GSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKT 302
G+ PRP ++A +L+ + + Y P+PIQ +P+ L RD+IGIA+TGSGKT
Sbjct: 245 GAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKT 304
Query: 303 AAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIV 362
AAF+ PML +I E +GP AV++ PTREL QQI E +F ++ V++
Sbjct: 305 AAFIWPMLIHIMDQ---KELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVY 361
Query: 363 GGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQV 422
GG S+ EQ +++G E+V+ TPGRLID ++++ L + +Y+V DEADRM DMGFE QV
Sbjct: 362 GGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQV 421
Query: 423 VGVLDAMPSSNLKPENE 439
+ +S+++P+ +
Sbjct: 422 RSI-----ASHVRPDRQ 433
>UNIPROTKB|P0A8J8 [details] [associations]
symbol:rhlB "RhlB" species:83333 "Escherichia coli K-12"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006401 "RNA
catabolic process" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0006401 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:M87049 GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:M83316 EMBL:X56310
PIR:G65181 RefSeq:NP_418227.1 RefSeq:YP_491659.1
ProteinModelPortal:P0A8J8 SMR:P0A8J8 DIP:DIP-35644N IntAct:P0A8J8
PaxDb:P0A8J8 PRIDE:P0A8J8 EnsemblBacteria:EBESCT00000001927
EnsemblBacteria:EBESCT00000015978 GeneID:12934326 GeneID:948290
KEGG:ecj:Y75_p3395 KEGG:eco:b3780 PATRIC:32123051 EchoBASE:EB0837
EcoGene:EG10844 HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY
ProtClustDB:PRK04837 BioCyc:EcoCyc:EG10844-MONOMER
BioCyc:ECOL316407:JW3753-MONOMER Genevestigator:P0A8J8
Uniprot:P0A8J8
Length = 421
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 137/369 (37%), Positives = 199/369 (53%)
Query: 244 SKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTA 303
SK + +++ L P+++ A+E+ G+ N +PIQ A+PL L RDV G A+TG+GKT
Sbjct: 2 SKTHLTEQKFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTM 61
Query: 304 AFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVG 363
AF+ Y+ P I++ + P A++MAPTRELA QI + A G+K+ G
Sbjct: 62 AFLTSTFHYLLSHPAIADR-KVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYG 120
Query: 364 GQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVV 423
G ++Q + G +++I T GRLID ++ + L VVLDEADRM D+GF +
Sbjct: 121 GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIR 180
Query: 424 GVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAG 483
+ MP P N+ R +FSAT+ V LA + + N + +
Sbjct: 181 WLFRRMP-----PANQ----------RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQ 225
Query: 484 KATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTT 543
K I + + EK LQ L++E AI+F NTK + + +L G+RV
Sbjct: 226 KTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGL 285
Query: 544 LHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIG 603
L G +Q++R L+ F ++LVATDVA RG+ IP V HV NYD+P + E Y HRIG
Sbjct: 286 LTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIG 345
Query: 604 RTGRAGKTG 612
RTGRAG +G
Sbjct: 346 RTGRAGASG 354
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 568 (205.0 bits), Expect = 2.5e-54, P = 2.5e-54
Identities = 132/326 (40%), Positives = 196/326 (60%)
Query: 321 EENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEV 380
E +GP AV++ PTREL QQI E +F ++ V++ GG S+ EQ +++G E+
Sbjct: 320 ELEPGDGPIAVIVCPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEI 379
Query: 381 VIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENED 440
V+ TPGRLID ++++ L + +Y+V DEADRM DMGFE QV + +S+++P+
Sbjct: 380 VVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSI-----ASHVRPD--- 431
Query: 441 EELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKES- 499
R T +FSAT +E+LAR L +P+ V G G+A E ++Q V ++
Sbjct: 432 ---------RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGP 482
Query: 500 EKFSRL-QRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLE 558
K++ L +RL++ + ++FV K NA+ +A NL + G+ + LHG Q +R +
Sbjct: 483 SKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVIS 542
Query: 559 GFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFL 618
F+ K VLVATDVA RG+DIP + VINYD+ +I+ +THRIGRTGRAG+ GVA T L
Sbjct: 543 DFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602
Query: 619 TFHDTDVFYDLKQMLIQSNSPVPPEL 644
T D++ DL + L +N V EL
Sbjct: 603 TPKDSNFAGDLVRNLEGANQHVSKEL 628
Score = 402 (146.6 bits), Expect = 7.1e-35, P = 7.1e-35
Identities = 84/220 (38%), Positives = 132/220 (60%)
Query: 220 KKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQM 279
+++ +T + R N+ G+ PRP ++A +L+ + + Y P+PIQ
Sbjct: 222 EEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQC 281
Query: 280 AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339
+P+ L RD+IGIA+TGSGKTAAF+ PML +I E +GP AV++ PTREL
Sbjct: 282 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQ---KELEPGDGPIAVIVCPTREL 338
Query: 340 AQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVL 399
QQI E +F ++ V++ GG S+ EQ +++G E+V+ TPGRLID ++++ L
Sbjct: 339 CQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNL 398
Query: 400 NQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE 439
+ +Y+V DEADRM DMGFE QV + +S+++P+ +
Sbjct: 399 QRVSYLVFDEADRMFDMGFEYQVRSI-----ASHVRPDRQ 433
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 129/331 (38%), Positives = 193/331 (58%)
Query: 327 GPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPG 386
G +V+APTRELA QIE E K++ + G+K V + GG + Q + +G E++I TPG
Sbjct: 357 GANVLVLAPTRELALQIEMEVKKYS-FRGMKAVCVYGGGNRNMQISDLERGAEIIICTPG 415
Query: 387 RLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEK 446
RL D + ++ Y+VLDEADRM+DMGFEPQ+ V+ +++P+
Sbjct: 416 RLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVM-----LDIRPD--------- 461
Query: 447 RIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAG-KATELISQHVVMMKES-EKFSR 504
R T M SAT PP V RLA+ Y++NP+ V +G+ AT + Q + +M++ +KF+
Sbjct: 462 ---RQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNT 518
Query: 505 LQRLLDELG--DKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRT 562
+ + + DK I+F K AD ++ L G+ +HG + Q RE ++ ++
Sbjct: 519 ITSFVKNMSSTDKI-IIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKS 577
Query: 563 KRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHD 622
+LVATDVA RG+DI D+ HVINYD P NIE Y HR+GRTGRAG+ G + +F T D
Sbjct: 578 GVVRILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTRED 637
Query: 623 TDVFYDLKQMLIQSNSPVPPELAKHEASKFK 653
+ +L ++L ++ VP EL + A +FK
Sbjct: 638 WAMAKELIEILQEAEQEVPDEL-HNMARRFK 667
Score = 344 (126.2 bits), Expect = 2.0e-28, P = 2.0e-28
Identities = 78/187 (41%), Positives = 113/187 (60%)
Query: 246 IPRPMRNWAEGKLT-PELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAA 304
IP P+ + + P++L + ++G+ PSPIQ A P+ LQ D+IGIA+TG+GKT A
Sbjct: 277 IPNPVWTFEQCFAEYPDMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLA 336
Query: 305 FVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGG 364
F+LP + + + G +V+APTRELA QIE E K++ + G+K V + GG
Sbjct: 337 FLLPGMIHTEYQS--TPRGTRGGANVLVLAPTRELALQIEMEVKKYS-FRGMKAVCVYGG 393
Query: 365 QSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVG 424
+ Q + +G E++I TPGRL D + ++ Y+VLDEADRM+DMGFEPQ+
Sbjct: 394 GNRNMQISDLERGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRK 453
Query: 425 V-LDAMP 430
V LD P
Sbjct: 454 VMLDIRP 460
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 569 (205.4 bits), Expect = 3.5e-54, P = 3.5e-54
Identities = 137/341 (40%), Positives = 197/341 (57%)
Query: 327 GPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPG 386
GP +++APTRELA QI++E ++F I + GG Q + +G ++V+ATPG
Sbjct: 507 GPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPG 566
Query: 387 RLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEK 446
RL D LE + Q + +VLDEADRM+DMGFEPQ+ +++ +P P
Sbjct: 567 RLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIP-----PR--------- 612
Query: 447 RIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGK--ATELISQHVVMMKESEKFSR 504
R T M++AT P V ++A L NPV V IG + A + I+Q+V ++ + EK R
Sbjct: 613 ---RQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERR 669
Query: 505 LQRLL--DELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRT 562
L+++L E G K I+F +TK+ D +A+++ + + +HG K+Q +R+ L FR+
Sbjct: 670 LEQILRSQERGSKV-IIFCSTKRLCDHLARSVGR-HFGAVVIHGDKTQGERDWVLNQFRS 727
Query: 563 KRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHD 622
+ VL+ATDVA RG+DI D+ VINYD P +E Y HRIGRTGRAG TGVA TF T D
Sbjct: 728 GKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQD 787
Query: 623 TDVFYDLKQMLIQSNSPVPPE---LAKHEASKFKPGTIPDR 660
DL ++L +N VPP+ +A PG DR
Sbjct: 788 WKYAPDLIKVLEGANQQVPPQVRDIAMRGGGGGGPGYSQDR 828
Score = 380 (138.8 bits), Expect = 4.2e-32, P = 4.2e-32
Identities = 75/199 (37%), Positives = 116/199 (58%)
Query: 232 IFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDV 291
I+R+ ++ G IP P + L PE+LR + G+ +P+PIQ P+ LQ RD+
Sbjct: 416 IYRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDI 475
Query: 292 IGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFA 351
+ IA+TGSGKT +++P + + GP +++APTRELA QI++E ++F
Sbjct: 476 VAIAKTGSGKTLGYLIPAFILLRHC----RNDSRNGPTVLILAPTRELATQIQDEALRFG 531
Query: 352 HYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEAD 411
I + GG Q + +G ++V+ATPGRL D LE + Q + +VLDEAD
Sbjct: 532 RSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEAD 591
Query: 412 RMIDMGFEPQVVGVLDAMP 430
RM+DMGFEPQ+ +++ +P
Sbjct: 592 RMLDMGFEPQIRKIVNEIP 610
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 566 (204.3 bits), Expect = 3.7e-54, P = 3.7e-54
Identities = 132/326 (40%), Positives = 196/326 (60%)
Query: 321 EENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEV 380
E +GP AV++ PTREL QQI E +F ++ V++ GG S+ EQ +++G E+
Sbjct: 320 ELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEI 379
Query: 381 VIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENED 440
V+ TPGRLID ++++ L + +Y+V DEADRM DMGFE QV + +S+++P+
Sbjct: 380 VVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSI-----ASHVRPD--- 431
Query: 441 EELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKES- 499
R T +FSAT +E+LAR L +P+ V G G+A E ++Q V ++
Sbjct: 432 ---------RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGP 482
Query: 500 EKFSRL-QRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLE 558
K++ L +RL++ + ++FV K NA+ +A NL + G+ + LHG Q +R +
Sbjct: 483 SKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVIL 542
Query: 559 GFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFL 618
F+ K VLVATDVA RG+DIP + VINYD+ +I+ +THRIGRTGRAG+ GVA T L
Sbjct: 543 DFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602
Query: 619 TFHDTDVFYDLKQMLIQSNSPVPPEL 644
T D++ DL + L +N V EL
Sbjct: 603 TPKDSNFAGDLVRNLEGANQHVSKEL 628
Score = 403 (146.9 bits), Expect = 5.0e-35, P = 5.0e-35
Identities = 84/220 (38%), Positives = 132/220 (60%)
Query: 220 KKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQM 279
+++ +T + R N+ G+ PRP ++A +L+ + + Y P+PIQ
Sbjct: 222 EEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQC 281
Query: 280 AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTREL 339
+P+ L RD+IGIA+TGSGKTAAF+ PML +I E +GP AV++ PTREL
Sbjct: 282 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQ---KELEPGDGPIAVIVCPTREL 338
Query: 340 AQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVL 399
QQI E +F ++ V++ GG S+ EQ +++G E+V+ TPGRLID ++++ L
Sbjct: 339 CQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNL 398
Query: 400 NQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE 439
+ +Y+V DEADRM DMGFE QV + +S+++P+ +
Sbjct: 399 QRVSYLVFDEADRMFDMGFEYQVRSI-----ASHVRPDRQ 433
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 130/326 (39%), Positives = 193/326 (59%)
Query: 321 EENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEV 380
E +GP AV++ PTREL QQI E +F ++ V++ GG S+ EQ +++G E+
Sbjct: 315 ELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEI 374
Query: 381 VIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENED 440
V+ TPGRLID ++++ L + Y+V DEADRM DMGFE QV + +S+++P+
Sbjct: 375 VVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSI-----ASHVRPD--- 426
Query: 441 EELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKES- 499
R T +FSAT +E+LAR L +P+ V G G+A E ++Q V +
Sbjct: 427 ---------RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGP 477
Query: 500 EKFSRL-QRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLE 558
K++ L +RL++ + ++FV K NA+ +A NL + + + LHG Q +R +
Sbjct: 478 SKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVIS 537
Query: 559 GFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFL 618
F+ K +LVATDVA RG+DIP + VINYD+ +I+ +THRIGRTGRAG+ GVA T L
Sbjct: 538 EFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 597
Query: 619 TFHDTDVFYDLKQMLIQSNSPVPPEL 644
T D++ DL + L +N V EL
Sbjct: 598 TPKDSNFAGDLVRNLEGANQHVSKEL 623
Score = 403 (146.9 bits), Expect = 2.0e-35, P = 2.0e-35
Identities = 87/235 (37%), Positives = 136/235 (57%)
Query: 206 YDTFDMRV-DRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLR 264
Y F+ D H +++ +T + R N+ G+ PRP ++A +L+
Sbjct: 205 YPPFEKNFYDEH---EEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMH 261
Query: 265 AVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENE 324
+ + Y P+PIQ +P+ + RD+IGIA+TGSGKTAAF+ PML +I E
Sbjct: 262 QIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQ---KELEP 318
Query: 325 AEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIAT 384
+GP AV++ PTREL QQI E +F ++ V++ GG S+ EQ +++G E+V+ T
Sbjct: 319 GDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCT 378
Query: 385 PGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE 439
PGRLID ++++ L + Y+V DEADRM DMGFE QV + +S+++P+ +
Sbjct: 379 PGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSI-----ASHVRPDRQ 428
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 102/264 (38%), Positives = 150/264 (56%)
Query: 356 IKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMID 415
+ + + GG I +Q + G +V + TPGR+ID ++R L++ +VVLDEAD+M+
Sbjct: 217 LDTICLYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQ 276
Query: 416 MGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPV 475
+GF V +L +P+ R + MFSATMP + L +KYL NP+
Sbjct: 277 VGFAEDVEIILQKLPAK-----------------RQSMMFSATMPSWIRSLTKKYLNNPL 319
Query: 476 VVTIGTAGKATELISQHVVMMK-ESEKFSR---LQRLLDELGDK-TAIVFVNTKKNADMV 530
TI G + + ++ + M ++ + R + L+ E G IVF TK++AD +
Sbjct: 320 --TIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRL 377
Query: 531 AKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYD 590
A L K Y+ LHG SQ QRE +L GFR +++LVATDVA RG+D+P+V VI+Y+
Sbjct: 378 AFGLAK-SYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYE 436
Query: 591 MPGNIEMYTHRIGRTGRAGKTGVA 614
+P N E + HR GRTGRAGK G A
Sbjct: 437 LPNNTETFVHRTGRTGRAGKKGSA 460
Score = 332 (121.9 bits), Expect = 8.6e-54, Sum P(2) = 8.6e-54
Identities = 80/193 (41%), Positives = 114/193 (59%)
Query: 439 EDEELDEKRI--YRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMM 496
ED E+ +++ R + MFSATMP + L +KYL NP+ TI G + + ++ + M
Sbjct: 281 EDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNPL--TIDLVGDSDQKLADGITMY 338
Query: 497 K-ESEKFSR---LQRLLDELGDK-TAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQE 551
++ + R + L+ E G IVF TK++AD +A L K Y+ LHG SQ
Sbjct: 339 SIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAK-SYKCEALHGDISQA 397
Query: 552 QREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKT 611
QRE +L GFR +++LVATDVA RG+D+P+V VI+Y++P N E + HR GRTGRAGK
Sbjct: 398 QRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKK 457
Query: 612 GVATTFLTFHDTD 624
G A + H D
Sbjct: 458 GSA---ILIHGQD 467
Score = 294 (108.6 bits), Expect = 8.6e-54, Sum P(2) = 8.6e-54
Identities = 63/174 (36%), Positives = 107/174 (61%)
Query: 258 LTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 317
++PE+++A++ G + PIQ A + ++ RD+IG A TG+GKT AF +P++ I +
Sbjct: 123 ISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFN 182
Query: 318 PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 377
++ + P +V+APTRELA+Q+E+E + A L + + GG I +Q + G
Sbjct: 183 --AKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLD--TICLYGGTPIGQQMRELNYG 238
Query: 378 CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPS 431
+V + TPGR+ID ++R L++ +VVLDEAD+M+ +GF V +L +P+
Sbjct: 239 IDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPA 292
>SGD|S000000441 [details] [associations]
symbol:PRP5 "RNA helicase in the DEAD-box family"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000348 "mRNA branch
site recognition" evidence=TAS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000000441 GO:GO:0005524
GO:GO:0005681 EMBL:BK006936 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008186
GeneTree:ENSGT00610000086076 KO:K12811 HOGENOM:HOG000007229
GO:GO:0000348 OMA:SLVIIYN OrthoDB:EOG40CMR1 EMBL:M33191 EMBL:Z36106
EMBL:AY692817 PIR:A35791 RefSeq:NP_009796.1
ProteinModelPortal:P21372 SMR:P21372 DIP:DIP-88N IntAct:P21372
MINT:MINT-403988 STRING:P21372 PaxDb:P21372 EnsemblFungi:YBR237W
GeneID:852539 KEGG:sce:YBR237W CYGD:YBR237w NextBio:971604
Genevestigator:P21372 GermOnline:YBR237W Uniprot:P21372
Length = 849
Score = 537 (194.1 bits), Expect = 1.1e-53, Sum P(2) = 1.1e-53
Identities = 135/450 (30%), Positives = 234/450 (52%)
Query: 222 LEEMTERDWRIFREDFNISYKGSKIPRPMRNWAE-GKLTPELLRAVERVGYKNPSPIQMA 280
+ EM + R+ + NI KG+ P+P+ W++ G T ++ E++ + + +PIQ
Sbjct: 228 MSEMEVEELRLSLD--NIKIKGTGCPKPVTKWSQLGLSTDTMVLITEKLHFGSLTPIQSQ 285
Query: 281 AIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELA 340
A+P + RDVIGI++TGSGKT +++LP+L + P+S+ GP +++APTRELA
Sbjct: 286 ALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHET--GPMGLILAPTRELA 343
Query: 341 QQIEEETVKFAHY-LGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCL---ERRY 396
QI EE KF I+ V GG +++Q +++G E+V+ATPGR ID L + +
Sbjct: 344 LQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDILTLNDGKL 403
Query: 397 AVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFS 456
+ +VV+DEADR+ D+GFEPQ+ ++ + ++ R + + S
Sbjct: 404 LSTKRITFVVMDEADRLFDLGFEPQITQIMKTVRPDKQCVLFSATFPNKLRSFAVRVLHS 463
Query: 457 ATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKE-SEKFSRLQRLLD----- 510
P ++ ++ + V E V ++ E SE F +Q D
Sbjct: 464 ---PISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFFDEVQSENDGQSSD 520
Query: 511 -ELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLV 569
E D AI+FV+++ D ++K L G +H GK ++R ++LE F+ ++ ++L+
Sbjct: 521 VEEVDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKFKREKNSILL 580
Query: 570 ATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDL 629
T+V RG+++P+V+ VI Y+ Y H GRT R ++G A T L + Y L
Sbjct: 581 CTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTAITLLLHDELSGAYIL 640
Query: 630 KQML----IQSNSPVPPELAKHEASKFKPG 655
+ + I++ P+ + + ++KF+ G
Sbjct: 641 SKAMRDEEIKALDPLQAKELQEMSAKFESG 670
Score = 46 (21.3 bits), Expect = 1.1e-53, Sum P(2) = 1.1e-53
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 108 SKKPKKRVIKPSE-KFRFSFDWENTEDT 134
S KP K+ K S+ K + SFD+ + +D+
Sbjct: 86 SVKPSKKKSKRSKVKKKISFDFSDDDDS 113
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 558 (201.5 bits), Expect = 3.1e-53, P = 3.1e-53
Identities = 130/326 (39%), Positives = 193/326 (59%)
Query: 321 EENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEV 380
E +GP AV++ PTREL QQI E +F ++ V++ GG S+ EQ +++G E+
Sbjct: 320 ELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEI 379
Query: 381 VIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENED 440
V+ TPGRLID ++++ L + Y+V DEADRM DMGFE QV + +S+++P+
Sbjct: 380 VVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSI-----ASHVRPD--- 431
Query: 441 EELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKES- 499
R T +FSAT +E+LAR L +P+ V G G+A E ++Q V +
Sbjct: 432 ---------RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGP 482
Query: 500 EKFSRL-QRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLE 558
K++ L +RL++ + ++FV K NA+ +A NL + + + LHG Q +R +
Sbjct: 483 SKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVIS 542
Query: 559 GFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFL 618
F+ K +LVATDVA RG+DIP + VINYD+ +I+ +THRIGRTGRAG+ GVA T L
Sbjct: 543 EFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602
Query: 619 TFHDTDVFYDLKQMLIQSNSPVPPEL 644
T D++ DL + L +N V EL
Sbjct: 603 TPKDSNFAGDLVRNLEGANQHVSKEL 628
Score = 403 (146.9 bits), Expect = 5.2e-35, P = 5.2e-35
Identities = 87/235 (37%), Positives = 136/235 (57%)
Query: 206 YDTFDMRV-DRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLR 264
Y F+ D H +++ +T + R N+ G+ PRP ++A +L+
Sbjct: 210 YPPFEKNFYDEH---EEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFARFGFDEQLMH 266
Query: 265 AVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENE 324
+ + Y P+PIQ +P+ + RD+IGIA+TGSGKTAAF+ PML +I E
Sbjct: 267 QIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQ---KELEP 323
Query: 325 AEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIAT 384
+GP AV++ PTREL QQI E +F ++ V++ GG S+ EQ +++G E+V+ T
Sbjct: 324 GDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCT 383
Query: 385 PGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE 439
PGRLID ++++ L + Y+V DEADRM DMGFE QV + +S+++P+ +
Sbjct: 384 PGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSI-----ASHVRPDRQ 433
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 558 (201.5 bits), Expect = 3.1e-53, P = 3.1e-53
Identities = 130/326 (39%), Positives = 193/326 (59%)
Query: 321 EENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEV 380
E +GP AV++ PTREL QQI E +F ++ V++ GG S+ EQ +++G E+
Sbjct: 322 ELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEI 381
Query: 381 VIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENED 440
V+ TPGRLID ++++ L + Y+V DEADRM DMGFE QV + +S+++P+
Sbjct: 382 VVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSI-----ASHVRPD--- 433
Query: 441 EELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKES- 499
R T +FSAT +E+LAR L +P+ V G G+A E ++Q V +
Sbjct: 434 ---------RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGP 484
Query: 500 EKFSRL-QRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLE 558
K++ L +RL++ + ++FV K NA+ +A NL + + + LHG Q +R +
Sbjct: 485 SKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVIS 544
Query: 559 GFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFL 618
F+ K +LVATDVA RG+DIP + VINYD+ +I+ +THRIGRTGRAG+ GVA T L
Sbjct: 545 EFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 604
Query: 619 TFHDTDVFYDLKQMLIQSNSPVPPEL 644
T D++ DL + L +N V EL
Sbjct: 605 TPKDSNFAGDLVRNLEGANQHVSKEL 630
Score = 403 (146.9 bits), Expect = 5.2e-35, P = 5.2e-35
Identities = 87/235 (37%), Positives = 136/235 (57%)
Query: 206 YDTFDMRV-DRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLR 264
Y F+ D H +++ +T + R N+ G+ PRP ++A +L+
Sbjct: 212 YPPFEKNFYDEH---EEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMH 268
Query: 265 AVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENE 324
+ + Y P+PIQ +P+ + RD+IGIA+TGSGKTAAF+ PML +I E
Sbjct: 269 QIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQ---KELEP 325
Query: 325 AEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIAT 384
+GP AV++ PTREL QQI E +F ++ V++ GG S+ EQ +++G E+V+ T
Sbjct: 326 GDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCT 385
Query: 385 PGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENE 439
PGRLID ++++ L + Y+V DEADRM DMGFE QV + +S+++P+ +
Sbjct: 386 PGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSI-----ASHVRPDRQ 435
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 327 (120.2 bits), Expect = 6.1e-53, Sum P(2) = 6.1e-53
Identities = 65/169 (38%), Positives = 110/169 (65%)
Query: 262 LLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISE 321
L++AV +GY++P+PIQ AIP L ++V+ A+TG+GKTA+FVLP+L + P I
Sbjct: 12 LVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHRFADAPKIRP 71
Query: 322 ENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVV 381
+ ++++ PTRELA Q+E+ ++A YL + +++ GG Q R+ +G +++
Sbjct: 72 KRVR----SIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRLIEGVDLL 127
Query: 382 IATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMP 430
+ATPGRL+D +R ++ + +VLDEADRM+DMGF + +++ +P
Sbjct: 128 VATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLP 176
Score = 278 (102.9 bits), Expect = 6.1e-53, Sum P(2) = 6.1e-53
Identities = 66/182 (36%), Positives = 96/182 (52%)
Query: 441 EELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESE 500
E+L E+R +FSAT+ V+ LA+ + + + + I A+ I Q + + +
Sbjct: 173 EKLPEQR---QNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDR 229
Query: 501 KFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGF 560
K + L L+ E A++F+ TK A + L+K G H G+SQ RE L F
Sbjct: 230 KSALLSHLIKENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDF 289
Query: 561 RTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTF 620
+ + LVAT V RGIDI + VINYD+P + Y HRIGRTGRAG G A +F++
Sbjct: 290 KAGKVPFLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSK 349
Query: 621 HD 622
D
Sbjct: 350 DD 351
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 327 (120.2 bits), Expect = 6.1e-53, Sum P(2) = 6.1e-53
Identities = 65/169 (38%), Positives = 110/169 (65%)
Query: 262 LLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISE 321
L++AV +GY++P+PIQ AIP L ++V+ A+TG+GKTA+FVLP+L + P I
Sbjct: 12 LVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHRFADAPKIRP 71
Query: 322 ENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVV 381
+ ++++ PTRELA Q+E+ ++A YL + +++ GG Q R+ +G +++
Sbjct: 72 KRVR----SIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRLIEGVDLL 127
Query: 382 IATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMP 430
+ATPGRL+D +R ++ + +VLDEADRM+DMGF + +++ +P
Sbjct: 128 VATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLP 176
Score = 278 (102.9 bits), Expect = 6.1e-53, Sum P(2) = 6.1e-53
Identities = 66/182 (36%), Positives = 96/182 (52%)
Query: 441 EELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESE 500
E+L E+R +FSAT+ V+ LA+ + + + + I A+ I Q + + +
Sbjct: 173 EKLPEQR---QNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDR 229
Query: 501 KFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGF 560
K + L L+ E A++F+ TK A + L+K G H G+SQ RE L F
Sbjct: 230 KSALLSHLIKENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDF 289
Query: 561 RTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTF 620
+ + LVAT V RGIDI + VINYD+P + Y HRIGRTGRAG G A +F++
Sbjct: 290 KAGKVPFLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSK 349
Query: 621 HD 622
D
Sbjct: 350 DD 351
>ZFIN|ZDB-GENE-060623-1 [details] [associations]
symbol:ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
52" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-060623-1
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:11056 HOVERGEN:HBG051332 KO:K14779
OrthoDB:EOG4XKV6Q EMBL:BC117610 IPI:IPI00627696
RefSeq:NP_001037780.1 UniGene:Dr.13799 ProteinModelPortal:Q1ECZ5
STRING:Q1ECZ5 GeneID:407696 KEGG:dre:407696 NextBio:20818558
Uniprot:Q1ECZ5
Length = 606
Score = 528 (190.9 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
Identities = 142/460 (30%), Positives = 240/460 (52%)
Query: 218 SEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGK----LTPELLRAVERVGYKN 273
S K+L+++ R I+ G+ IP P+ + E + L P ++ ++ G++
Sbjct: 130 SLKRLKQLHNEKVNRIRHQNRINVHGTDIPDPVTTFEELQKEYDLDPRIIHNIKAAGFQT 189
Query: 274 PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVM 333
P+PIQM A+PL + +R+++ A TGSGKT AF LP+L ++ + P+++ G A+++
Sbjct: 190 PTPIQMQAVPLMMHKREILACAPTGSGKTMAFCLPLLAHLRQ--PLNK-----GFRALII 242
Query: 334 APTRELAQQIEEETVKFAHYLGIKVVSIVGG-QSIEEQGFRIRQGCEVVIATPGRLIDCL 392
+PTRELA Q E +K + +G +V I G +++++ G + + ++++ TP RLI L
Sbjct: 243 SPTRELATQTHRELLKLSEGVGFRVHMINKGVEAVKKYGPKSAKKFDILVTTPNRLIYLL 302
Query: 393 ERRYAVLN--QCNYVVLDEADRMID---MGFEPQVVGVLDAMPSSNLKPENEDEELDEKR 447
+ +N ++V+DE+D++ + GF Q+ + A S N++ R
Sbjct: 303 NQDPPAINLSSVEWLVVDESDKLFEDGKTGFREQLATIFLACSSPNVR-----------R 351
Query: 448 IYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMM-KESEKFSRLQ 506
+ +FSAT VER + L N V V+IG A E + Q ++ + E+ K ++
Sbjct: 352 V-----LFSATFATDVERWCKLNLDNLVSVSIGARNSAAETVEQQLLFVGSENGKILAMR 406
Query: 507 RLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYN 566
L+ + +VFV + A + L G V +H ++Q+QR+ + FR+ +
Sbjct: 407 NLIKQGFLPPVLVFVQSIDRARELYHELVYEGINVDVIHADRTQQQRDNVVSSFRSGKIW 466
Query: 567 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVF 626
VL+ T + RGID + VINYD P + Y HRIGRTGRAG G A TF T D +
Sbjct: 467 VLICTALLARGIDFKGINLVINYDFPTSAVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLL 526
Query: 627 YDLKQMLIQSNSPVPPELA--KHEASKFKPGTIPDRPPRR 664
+ ++ ++ PVP + K SK K + +PPRR
Sbjct: 527 RSIATVIKKAGCPVPDYMIGFKKIKSKLKHQLVT-KPPRR 565
Score = 37 (18.1 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 107 GSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQ 149
G+K KR K +E+F+ ++D+S ++ + E Q
Sbjct: 13 GAKFDLKRFAKDAERFKVGKS--QSKDSSDQLSGISYFGRETQ 53
>POMBASE|SPAC31A2.07c [details] [associations]
symbol:dbp10 "ATP-dependent RNA helicase Dbp10
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
Uniprot:Q09719
Length = 848
Score = 340 (124.7 bits), Expect = 1.4e-52, Sum P(3) = 1.4e-52
Identities = 79/192 (41%), Positives = 115/192 (59%)
Query: 242 KGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGK 301
KG K N+ L LLRA+ + G+K P+PIQ IPL L+ RDV+G+A TGSGK
Sbjct: 60 KGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGK 119
Query: 302 TAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSI 361
TAAFV+PM+ ++ ++ N A++++P RELA Q + F+ ++ V+I
Sbjct: 120 TAAFVIPMIEHLKST--LANSNTR----ALILSPNRELALQTVKVVKDFSKGTDLRSVAI 173
Query: 362 VGGQSIEEQGFRIRQGC-EVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEP 420
VGG S+EEQ F + G ++V+ATPGR + L+ YVV DEADR+ +MGF
Sbjct: 174 VGGVSLEEQ-FSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAA 232
Query: 421 QVVGVLDAMPSS 432
Q+ +L A+P+S
Sbjct: 233 QLTEILHALPTS 244
Score = 249 (92.7 bits), Expect = 1.4e-52, Sum P(3) = 1.4e-52
Identities = 53/120 (44%), Positives = 75/120 (62%)
Query: 514 DKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV 573
D T +VFV TK + + V++ L + GY V+ ++G QE R + FR + N+LV TDV
Sbjct: 347 DST-LVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDV 405
Query: 574 AGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQML 633
A RGIDIP +A+VINYD P +++ HR+GRT RAG+TG A + + D DL+ L
Sbjct: 406 ASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLFL 465
Score = 73 (30.8 bits), Expect = 1.4e-52, Sum P(3) = 1.4e-52
Identities = 17/63 (26%), Positives = 34/63 (53%)
Query: 450 RTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLL 509
R T +FSAT+P + A+ L++PV+V + K + + +K +E+ + L +L
Sbjct: 245 RQTLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAEREAALLCIL 304
Query: 510 DEL 512
++
Sbjct: 305 QDI 307
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 144/419 (34%), Positives = 225/419 (53%)
Query: 210 DMRVDRHWSEKKLEEMTERDWRIFREDFNI-SYKGSKIPRPM-RNWAEGKLTPELLRAVE 267
+M +++ + +++E E D + DF +G + + M N+ L+ +L+ +
Sbjct: 190 EMTLEKGGKDDEIDE--EDDSEEAKADFYAPETEGDEAKKQMYENFNSLSLSRPVLKGLA 247
Query: 268 RVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEG 327
+GY PSPIQ A IP+ L +D+I A TGSGKTAAF++P+ I RL + + +
Sbjct: 248 SLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPI---IERL--LYKPAKIAS 302
Query: 328 PYAVVMAPTRELAQQIEEETVKFAHYL-GIKVVSIVGGQSIEEQGFRIRQGCEVVIATPG 386
+V+ PTRELA Q+ + + A ++ GI VGG ++ +Q ++ ++VIATPG
Sbjct: 303 TRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPG 362
Query: 387 RLIDCLERRYAVLN--QCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELD 444
R ID + R A N +V+DEADRM++ GF+ ++ ++ +PS+
Sbjct: 363 RFIDHI-RNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSN------------ 409
Query: 445 EKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFS- 503
R +FSATM ++ L L+ PV + I KA ++Q V +++ +
Sbjct: 410 -----RQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKP 464
Query: 504 ----RLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEG 559
L R LD G K +VFV K+ A + + LG V LHG +QEQR S+
Sbjct: 465 ALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNK 524
Query: 560 FRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFL 618
F+ VL+ TD+A RG+DIP + VINYDMP + E+Y HR+GRT RAG+ G + TF+
Sbjct: 525 FKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 583
>UNIPROTKB|B4DLW8 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 HOVERGEN:HBG015893 UniGene:Hs.279806
HGNC:HGNC:2746 ChiTaRS:DDX5 EMBL:AK297192 IPI:IPI00798375
STRING:B4DLW8 Ensembl:ENST00000450599 UCSC:uc010wqa.1
Uniprot:B4DLW8
Length = 535
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 128/323 (39%), Positives = 188/323 (58%)
Query: 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATP 385
+GP +V+APTRELAQQ+++ ++ +K I GG Q + +G E+ IATP
Sbjct: 87 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATP 146
Query: 386 GRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDE 445
GRLID LE L + Y+VLDEADRM+DMGFEPQ+ ++D ++P+
Sbjct: 147 GRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPD-------- 193
Query: 446 KRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAG-KATELISQHVVMMKESEKFSR 504
R T M+SAT P V +LA +L++ + + IG A I Q V + + EK +
Sbjct: 194 ----RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEK 249
Query: 505 LQRLLDEL-GDKT--AIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFR 561
L RL++E+ +K IVFV TK+ D + + + + G+ +HG KSQ++R+ L F+
Sbjct: 250 LIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 309
Query: 562 TKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFH 621
+ +L+ATDVA RG+D+ DV VINYD P + E Y HRIGRT R+ KTG A TF T +
Sbjct: 310 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 369
Query: 622 DTDVFYDLKQMLIQSNSPVPPEL 644
+ DL +L ++N + P+L
Sbjct: 370 NIKQVSDLISVLREANQAINPKL 392
>UNIPROTKB|I3LLD5 [details] [associations]
symbol:I3LLD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 Ensembl:ENSSSCT00000032168 OMA:SKRERIM
Uniprot:I3LLD5
Length = 401
Score = 298 (110.0 bits), Expect = 2.3e-51, Sum P(2) = 2.3e-51
Identities = 72/226 (31%), Positives = 117/226 (51%)
Query: 422 VVGVLDAMPSSNLKPENEDEELDEKRIYRT-TYMFSATMPPAVERLARKYLRNPVVVTIG 480
V+ D M S K + D + +K T + SATMP V + +K++R+P+ + +
Sbjct: 180 VLDEADEMLSRGFKDQIYD--IFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRIXLT 237
Query: 481 TAGKATELISQHVVMMKESE-KFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGY 539
G I Q + ++ E K L L + L A++F+NT++ D + + + +
Sbjct: 238 LEG-----IRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDF 292
Query: 540 RVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYT 599
V+ +HG Q++R++ + FR+ VL+ TD+ RGID+ V+ VINYD+P N E Y
Sbjct: 293 TVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYI 352
Query: 600 HRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELA 645
HRIGR GR G+ GVA +T D D++ S +P +A
Sbjct: 353 HRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVA 398
Score = 266 (98.7 bits), Expect = 2.3e-51, Sum P(2) = 2.3e-51
Identities = 60/176 (34%), Positives = 98/176 (55%)
Query: 258 LTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 317
L+ LLR + G++ PS IQ AI ++ DVI A++G+GKTA F + +L I
Sbjct: 39 LSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI---- 94
Query: 318 PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIR-Q 376
E + + A+V+APTRELAQQI++ + Y+G + +GG ++ + +++ +
Sbjct: 95 ----ELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQME 150
Query: 377 GCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 432
+++ TPGR+ D L RRY VLDEAD M+ GF+ Q+ + + S+
Sbjct: 151 APHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSN 206
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 121/303 (39%), Positives = 175/303 (57%)
Query: 353 YLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADR 412
Y G K + I GG + Q + +G ++VIATPGRL D + L Y+ +EADR
Sbjct: 339 YKGFKSICIYGGGDRKAQINVVTKGVDIVIATPGRLNDLQMNNFINLKSITYLA-NEADR 397
Query: 413 MIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLR 472
M+DMGFEPQ++ +L +++P+ R T M SAT P V RLA+ YLR
Sbjct: 398 MLDMGFEPQIMKIL-----IDVRPD------------RQTVMMSATWPDGVRRLAKSYLR 440
Query: 473 NPVVVTIGTAG-KATELISQHVVMMKESEKFSRLQRLLDELGDKT-AIVFVNTKKNADMV 530
NP++V +GT A + Q V+++ E EK + ++ +D + K AI+FV K AD +
Sbjct: 441 NPMIVYVGTLDLAAVNTVEQKVIVINEEEKKAFMENFIDSMKPKDKAIIFVGKKSTADDI 500
Query: 531 AKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYD 590
A +L G V +LHG + Q RE +L+ F+ + +LVATD+A RG+D+ D+ HV N+D
Sbjct: 501 ASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVATDLASRGLDVHDITHVFNFD 560
Query: 591 MPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEAS 650
P NIE Y HR+GRTGRAG+TG A T +T D +L +L ++ VP EL A
Sbjct: 561 FPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAASELIDILQRAKQVVPDELISM-AE 619
Query: 651 KFK 653
++K
Sbjct: 620 RYK 622
Score = 343 (125.8 bits), Expect = 2.0e-28, P = 2.0e-28
Identities = 82/209 (39%), Positives = 127/209 (60%)
Query: 230 WRIFREDFNISY----KGSK--IPRPMRNWAEG-KLTPELLRAVERVGYKNPSPIQMAAI 282
WR +E+ NI +G K IP P+ + + + P+++ + + G++ P+PIQ A
Sbjct: 214 WR--KENNNIICDDLKEGEKRCIPNPVCKFEDVFEQYPDIMANIRKTGFQKPTPIQSQAW 271
Query: 283 PLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQ 342
P+ LQ D+IGIA+TG+GKT A+++P +++ PI ++ GP +V+APTRELA Q
Sbjct: 272 PIILQGIDLIGIAQTGTGKTLAYLMPGFIHLAS-QPIPKDKRG-GPGMLVLAPTRELALQ 329
Query: 343 IEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQC 402
+E E +K+ Y G K + I GG + Q + +G ++VIATPGRL D + L
Sbjct: 330 VEAECLKYT-YKGFKSICIYGGGDRKAQINVVTKGVDIVIATPGRLNDLQMNNFINLKSI 388
Query: 403 NYVVLDEADRMIDMGFEPQVVGVL-DAMP 430
Y+ +EADRM+DMGFEPQ++ +L D P
Sbjct: 389 TYLA-NEADRMLDMGFEPQIMKILIDVRP 416
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 298 (110.0 bits), Expect = 4.7e-51, Sum P(2) = 4.7e-51
Identities = 75/216 (34%), Positives = 117/216 (54%)
Query: 450 RTTYMFSATMPPAVERLARKYLRNPVVVTIGTA-GKATELISQHVVMMKESEKFSRLQRL 508
R T +FSAT P ++ ++ R PV V++ G+ I Q + ++ ++R+
Sbjct: 179 RQTLLFSATYPDSIAAMSAGVQREPVEVSVDEVHGEGA--IEQVFYEVDSGQRIEAVERI 236
Query: 509 LDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVL 568
L ++A++F NTK VA L GY +HG Q +R+ L F + +VL
Sbjct: 237 LGHYRPESALIFCNTKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFANRSASVL 296
Query: 569 VATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYD 628
VATDVA RG+DI +++ VINY++ N E++THRIGRTGRAG+ G+A + +T ++
Sbjct: 297 VATDVAARGLDIKELSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTPRES----- 351
Query: 629 LKQMLIQSNSPVPPEL-AKHEASKFKPGTI-PDRPP 662
LI + + VP + A+ + S P T P PP
Sbjct: 352 ---RLIAAIADVPGSIIARGDLSTLAPLTAKPPLPP 384
Score = 296 (109.3 bits), Expect = 4.7e-51, Sum P(2) = 4.7e-51
Identities = 73/175 (41%), Positives = 104/175 (59%)
Query: 257 KLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRL 316
+L +LR + +GY +PIQ ++PL L +DVI A+TGSGKTAAF + +L SRL
Sbjct: 10 RLKAPMLRNLASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLL---SRL 66
Query: 317 PPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYL-GIKVVSIVGGQSIEEQGFRIR 375
+S +A +V+ PTRELA Q+ +E + A + IK+++I GG Q +
Sbjct: 67 DALSFRVQA-----LVLCPTRELADQVGKELRRLARFTDNIKILTICGGVPFGPQLGSLE 121
Query: 376 QGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMP 430
G VVI TPGRL+D L R L+ +VLDEADRM+DMGF+ + ++ A P
Sbjct: 122 HGAHVVIGTPGRLLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDISALIAAAP 176
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 505 (182.8 bits), Expect = 5.4e-51, Sum P(2) = 5.4e-51
Identities = 113/312 (36%), Positives = 184/312 (58%)
Query: 323 NEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVI 382
++ E YA ++APTRELAQQI+E +G++ IVGG ++ +Q + + ++I
Sbjct: 145 HDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIII 204
Query: 383 ATPGRLIDCLERRYAV-LNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDE 441
ATPGRL+D LE L + ++V+DEADR++DM F P + +L +P+
Sbjct: 205 ATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQE-------- 256
Query: 442 ELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEK 501
RTTY+FSATM +++L R L NPV + + + + Q ++++ K
Sbjct: 257 --------RTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLK 308
Query: 502 FSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFR 561
+ L LL+E KT I+F TK NA+ ++ + L + T LHG +Q QR SL+ F+
Sbjct: 309 NTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFK 368
Query: 562 TKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFH 621
+ ++LVATDVA RG+DIP V V+NYD+P + + Y HR+GRT RAG++G + + ++ +
Sbjct: 369 AGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQY 428
Query: 622 DTDVFYDLKQML 633
D ++ ++++L
Sbjct: 429 DLELILRIEEVL 440
Score = 345 (126.5 bits), Expect = 3.6e-30, Sum P(2) = 3.6e-30
Identities = 75/181 (41%), Positives = 116/181 (64%)
Query: 252 NWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLT 311
+++E L PEL++A + + Y P+PIQ AIP L+ D+IG+A+TGSGKTAAF +P+L
Sbjct: 82 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPIL- 140
Query: 312 YISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQG 371
+RL ++ E YA ++APTRELAQQI+E +G++ IVGG ++ +Q
Sbjct: 141 --NRL-----WHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQA 193
Query: 372 FRIRQGCEVVIATPGRLIDCLERRYAV-LNQCNYVVLDEADRMIDMGFEPQVVGVLDAMP 430
+ + ++IATPGRL+D LE L + ++V+DEADR++DM F P + +L +P
Sbjct: 194 RDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIP 253
Query: 431 S 431
+
Sbjct: 254 T 254
Score = 42 (19.8 bits), Expect = 5.4e-51, Sum P(2) = 5.4e-51
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 112 KKRVIKPSEKFRFSFDWENT-EDTS 135
KK+V+K K S ENT ED S
Sbjct: 55 KKKVLKSKSKSTVSTQNENTNEDES 79
>UNIPROTKB|Q86TM3 [details] [associations]
symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
GermOnline:ENSG00000184735 Uniprot:Q86TM3
Length = 631
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 117/324 (36%), Positives = 186/324 (57%)
Query: 324 EAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIA 383
+ GP +V+ PTRELA +E E K++ Y G+K + I GG++ Q I +G +++IA
Sbjct: 293 QRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIA 351
Query: 384 TPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEEL 443
TPGRL D L Y+V+DEAD+M+DM FEPQ+ +L +++P+
Sbjct: 352 TPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKIL-----LDVRPD------ 400
Query: 444 DEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGK-ATELISQHVVMMKESEKF 502
R T M SAT P V +LA YL++P++V +G A + Q++++ E EK
Sbjct: 401 ------RQTVMTSATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKR 454
Query: 503 SRLQRLLDELG--DKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGF 560
+ Q ++ + DK I+FV+ K AD ++ + + G +LHG Q +E ++E F
Sbjct: 455 ALTQEFVENMSPNDKV-IMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDF 513
Query: 561 RTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTF 620
++ +L+ TD+ RG+D+ DV HV NYD P NI++Y HR+G GR GKTG + T +T
Sbjct: 514 KSGNIKILITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQ 573
Query: 621 HDTDVFYDLKQMLIQSNSPVPPEL 644
D+ + +L ++L ++N VP +L
Sbjct: 574 RDSKMAGELIKILDRANQSVPEDL 597
Score = 360 (131.8 bits), Expect = 2.0e-30, P = 2.0e-30
Identities = 86/217 (39%), Positives = 131/217 (60%)
Query: 222 LEEMTERDWRIFREDFNISY----KGSK--IPRPMRNWAEG-KLTPELLRAVERVGYKNP 274
+ EM +WR +E+FNI+ G K IP+P + + + P+LL+++ RVG P
Sbjct: 188 MSEMQVINWR--KENFNITCDDLKSGEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGIVKP 245
Query: 275 SPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMA 334
+PIQ A P+ LQ D+I +A+TG+GKT ++++P ++ PIS E + GP +V+
Sbjct: 246 TPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDS-QPISRE-QRNGPGMLVLT 303
Query: 335 PTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLER 394
PTRELA +E E K++ Y G+K + I GG++ Q I +G +++IATPGRL D
Sbjct: 304 PTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN 362
Query: 395 RYAVLNQCNYVVLDEADRMIDMGFEPQVVGVL-DAMP 430
L Y+V+DEAD+M+DM FEPQ+ +L D P
Sbjct: 363 NSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRP 399
>TAIR|locus:2828586 [details] [associations]
symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
Length = 505
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 131/422 (31%), Positives = 215/422 (50%)
Query: 226 TERDWRIFRE--DFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIP 283
+ D ++ R D ++ +GS +P P+ + L P+LL +E GY P+PIQM AIP
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 284 LGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQI 343
L + ++ A+TGSGKTA+F++P+++ + ++ P A+V+APTREL Q+
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 202
Query: 344 EEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCN 403
E++ L K +VGG + Q +RI+QG E++I TPGR++D L + L+
Sbjct: 203 EDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIM 262
Query: 404 YVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAV 463
VLDE D M+ GF QV+ + A+ + L I R ++ +
Sbjct: 263 TFVLDEVDCMLQRGFRDQVMQIFQALSQPQVL-------LFSATISREVEKVGGSLAKEI 315
Query: 464 ERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNT 523
++ + NP KA ++ V ++ +K + R + A+V+V++
Sbjct: 316 ILVS---IGNP-----NKPNKAVNQLAIWVDAKQKKQKLFDILRSQNHF-KPPAVVYVSS 366
Query: 524 KKNADMVAKNLDKL-GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPD 582
+ AD++A + + G + ++HG K ++R + F VLV+T V GRG+D+
Sbjct: 367 RVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLV 426
Query: 583 VAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPP 642
V VI +DMP I+ Y H IGR R G+ G A F+ D ++F DL L S + +P
Sbjct: 427 VRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAIPK 486
Query: 643 EL 644
EL
Sbjct: 487 EL 488
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 127/356 (35%), Positives = 193/356 (54%)
Query: 309 MLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIE 368
+L I RL + A P +++ PTRELA Q+ E K+ YL + + ++GG S +
Sbjct: 59 VLPMIQRLS--TGRARARMPRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFK 116
Query: 369 EQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDA 428
EQ +++G +V+IATPGRL+D +R ++ +++DEADRM+DMGF P + +
Sbjct: 117 EQETLLQRGVDVLIATPGRLMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKICAK 176
Query: 429 MPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATEL 488
+P++ R T +FSAT P ++RLA+ + ++P + + + E
Sbjct: 177 LPAN-----------------RQTLLFSATFPTDIQRLAKTFQKDPKKIEVTRPAQTAET 219
Query: 489 ISQHVVMMKESEKFSR---LQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLH 545
ISQ VV + ++ +R L+R+++ K IVF N K D+VA +L K G+ +H
Sbjct: 220 ISQFVVKLPTNDGKARRTALRRVIEATNVKNGIVFCNRKVEVDIVAASLTKHGHDAAPIH 279
Query: 546 GGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRT 605
G Q R +L+ FR + +LVA+DVA RG+DIPDV HV N+ P E Y HRIGRT
Sbjct: 280 GDLPQSVRSETLQRFRDGKLKLLVASDVAARGLDIPDVGHVFNFGPPPKDEDYVHRIGRT 339
Query: 606 GRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSP-VPPELAKHEASKFKPGTIPDR 660
GRAG+TG + T +T D D + +I+ + P PE E P DR
Sbjct: 340 GRAGRTGESYTVVTPAD-DKSWGFVVKMIKKDVPEFMPEGLLEELETLPPEEKRDR 394
Score = 345 (126.5 bits), Expect = 4.5e-29, P = 4.5e-29
Identities = 73/180 (40%), Positives = 112/180 (62%)
Query: 253 WAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTY 312
+A+ L +L+AV GY P+PIQ AIP L DV G+A+TG+GKTAAFVLPM+
Sbjct: 6 FADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQR 65
Query: 313 ISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGF 372
+S + A P +++ PTRELA Q+ E K+ YL + + ++GG S +EQ
Sbjct: 66 LS-----TGRARARMPRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQET 120
Query: 373 RIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 432
+++G +V+IATPGRL+D +R ++ +++DEADRM+DMGF P + + +P++
Sbjct: 121 LLQRGVDVLIATPGRLMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKICAKLPAN 180
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 129/398 (32%), Positives = 213/398 (53%)
Query: 250 MRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 309
++ +AE + EL++A ER+G+KNPS IQ A+P L+ +DVIG+A+TGSGKT AF +P+
Sbjct: 8 VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPI 67
Query: 310 LTYISRLPPISEENEAEGP----YAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQ 365
L + SE + P +A V++PTRELA QI E+ + ++ +VGG
Sbjct: 68 LQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGI 127
Query: 366 SIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGV 425
+Q + + V++ATPGRL D + D + + V+
Sbjct: 128 DRMQQTIALGKRPHVIVATPGRLWDHMS--------------DTKGFSLK-SLKYLVLDE 172
Query: 426 LDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKA 485
D + + + + ++ ++ L+E + R T++FSATM V +L R LRNPV + +
Sbjct: 173 ADRLLNEDFE-KSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYST 231
Query: 486 TELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLH 545
+ + Q + K L +L E+ + T+++F T +A L LG+R +
Sbjct: 232 VDTLKQQYRFVAAKYKDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPIS 291
Query: 546 GGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRT 605
G +Q +R +L F+ N+LV TDVA RG+DIP V VINYD+P N + Y HR+GRT
Sbjct: 292 GQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRT 351
Query: 606 GRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPE 643
RAG++GV + + ++ + + +++++ + P E
Sbjct: 352 ARAGRSGVGISLVNQYELEWYIQIEKLIGKKLPEYPAE 389
>UNIPROTKB|F1NQA6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 EMBL:AADN02025730
IPI:IPI00822952 Ensembl:ENSGALT00000039070 ArrayExpress:F1NQA6
Uniprot:F1NQA6
Length = 603
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 144/463 (31%), Positives = 243/463 (52%)
Query: 210 DMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNW----AEGKLTPELLRA 265
D + ++ + +KLE + FR I+ +G+ +P P+ + E K+ P+++
Sbjct: 114 DTKDNQKPTAEKLERLRREKINRFRNQHRINVQGTDLPDPIATFDQLQKEYKIHPKVIEN 173
Query: 266 VERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEA 325
++ G++ P+PIQM AIP+ L R+++ A TGSGKT AF +P+LT++ + P+++
Sbjct: 174 IQAAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFCIPLLTHLKQ--PMNK---- 227
Query: 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIV-GGQSIEEQGFRIRQGCEVVIAT 384
G A++++PTRELA Q E VK A G ++ I ++ ++ G + + ++++ T
Sbjct: 228 -GFRALIISPTRELASQTHRELVKLADGTGFRIHMIQKASEAAKKFGPKSSRKFDILVTT 286
Query: 385 PGRLIDCLERRY-AV-LNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEE 442
P RLI L++ A+ L ++V+DE+D++ FE G D + S L +
Sbjct: 287 PNRLIYLLKQDPPAIDLTSVEWLVVDESDKL----FEDGKSGFRDQLASIFLACTSH--- 339
Query: 443 LDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMM-KESEK 501
+ R + FSAT VE + L + V+V++G A E + Q ++ + E+ K
Sbjct: 340 -----VVRRAF-FSATFAHDVEEWCKLNLDSIVLVSVGARNSAAETVEQELLFVGSETGK 393
Query: 502 FSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFR 561
+ ++ L+ + +VFV + + A + L G V +H K+Q+QR+ + FR
Sbjct: 394 LTAMRELVKKGFAPPVLVFVQSIERAKELFHELIYEGINVDVIHADKTQQQRDNVVHSFR 453
Query: 562 TKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFH 621
+ VL+ T + RGID V VINYD+P + Y HRIGRTGRAG TG A TF T
Sbjct: 454 AGKIWVLICTALLARGIDFKGVNMVINYDLPTSAVEYIHRIGRTGRAGHTGKAVTFFTED 513
Query: 622 DTDVFYDLKQMLIQSNSPVP------PELAKHEASKF--KPGT 656
D + + ++ ++ PVP P+L + KF KP T
Sbjct: 514 DKPLLRSIANVIQRAGCPVPDYIKHFPKLQSKQKKKFIKKPLT 556
>RGD|2324094 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:2324094
GO:GO:0005524 GO:GO:0003723 EMBL:CH473973 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 CTD:57696 KO:K14809
OrthoDB:EOG4WH8KN GeneTree:ENSGT00550000074969 IPI:IPI00370890
RefSeq:NP_001258255.1 UniGene:Rn.209289 Ensembl:ENSRNOT00000001387
GeneID:100362764 KEGG:rno:100362764 UCSC:RGD:2324094 Uniprot:D3ZX56
Length = 600
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 140/378 (37%), Positives = 202/378 (53%)
Query: 258 LTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 317
L P +L A+ +G+ + +P+Q A IPL ++ +DV A TGSGKT AFV+P+L + R
Sbjct: 16 LHPLVLGALRELGFLHMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRRE 75
Query: 318 PISEENEAEGPYAVVMAPTRELAQQIEEETVKFA-HYLGIKVVSIVGGQSIEEQGFRIRQ 376
++N+ G A+V+ PTRELA QI+E F H+ + +GG++ E R +Q
Sbjct: 76 EKLKKNQV-G--AIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQ 132
Query: 377 -GCEVVIATPGRLIDCLERRYAVLNQCNYV------VLDEADRMIDMGFEPQVVGVLDAM 429
G +++ATPGRL D R+ L+ +YV VLDEADR++DMGFE + +L+ +
Sbjct: 133 HGGNIIVATPGRLEDMFRRKAEGLDLASYVKSLDVLVLDEADRLLDMGFEASINTILEFL 192
Query: 430 PSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTI---GTAGKAT 486
P R T +FSAT VE L R LRNPV +++ G A +T
Sbjct: 193 PKQ-----------------RRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASST 235
Query: 487 EL----ISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVT 542
+ + H ++ K EKF++L L + +VF +T + K L+ L RV
Sbjct: 236 QKTPSRLENHYMICKADEKFNQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALVQRVK 295
Query: 543 TL--HGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTH 600
L HG ++ +I +E FR + +LV TDV RGIDIP+V V+ YD P N + H
Sbjct: 296 ILCIHGKMKYKRNKIFME-FRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVH 354
Query: 601 RIGRTGRAGKTGVATTFL 618
R GRT R G G A FL
Sbjct: 355 RCGRTARIGHGGSALVFL 372
>CGD|CAL0003464 [details] [associations]
symbol:orf19.5991 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003464 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000003
EMBL:AACQ01000004 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_723054.1
RefSeq:XP_723201.1 STRING:Q5ANB2 GeneID:3635229 GeneID:3635325
KEGG:cal:CaO19.13412 KEGG:cal:CaO19.5991 KO:K14808 Uniprot:Q5ANB2
Length = 908
Score = 328 (120.5 bits), Expect = 7.0e-50, Sum P(3) = 7.0e-50
Identities = 70/182 (38%), Positives = 116/182 (63%)
Query: 252 NWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLT 311
++A LT +L + + GYK P+PIQ IPL ++ RDV+G+A TGSGKTAAFVLP+
Sbjct: 100 SFASFGLTKFILANIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPL-- 157
Query: 312 YISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQG 371
I RL + + G AV+++P+RELA Q ++ +F+H ++ + ++GG S+EE
Sbjct: 158 -IERL----KSRQPGGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGDSLEEDF 212
Query: 372 FRIRQGCEVVIATPGRLIDC-LERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMP 430
++ ++++ TPGR + +E +Y ++ Y+V DEADR+ +MGF Q+ +L ++P
Sbjct: 213 SKMMTKPDIIVCTPGRFLHLKVEMQYDLMT-VQYIVFDEADRLFEMGFAEQLNELLASLP 271
Query: 431 SS 432
S+
Sbjct: 272 SN 273
Score = 228 (85.3 bits), Expect = 7.0e-50, Sum P(3) = 7.0e-50
Identities = 56/148 (37%), Positives = 82/148 (55%)
Query: 516 TAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAG 575
+ IVFV TK + + V K L GY V+ ++G Q R+ L FR NVLV TDVA
Sbjct: 396 STIVFVPTKHHVEYVTKLLRDAGYLVSYIYGTLDQHARKNQLYQFRVGLTNVLVVTDVAA 455
Query: 576 RGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDL-----K 630
RGIDIP +A+VIN+ +P + +++ HR+GRT RAG G A + + + DL K
Sbjct: 456 RGIDIPVLANVINFTLPASSKIFIHRVGRTARAGNKGWAYSIVNEKELPYLLDLELFLGK 515
Query: 631 QMLIQSNSPVPPELAKHEAS-KFKPGTI 657
++L+ S E+ K ++ F P +
Sbjct: 516 KILLTSMHEAKVEMLKKSSTGTFIPPVV 543
Score = 84 (34.6 bits), Expect = 7.0e-50, Sum P(3) = 7.0e-50
Identities = 23/86 (26%), Positives = 42/86 (48%)
Query: 450 RTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLL 509
R + +FSAT+P ++ A+ L NPV+V + K ++ + K++E+ + L +L
Sbjct: 274 RQSLLFSATLPRSLVDFAKAGLTNPVLVRLDAESKISDQLQMAYFTTKKNEREANLLYIL 333
Query: 510 DELGDKTAIVFVNTKKNADMVAKNLD 535
E+ KK DM + +D
Sbjct: 334 QEVIKMPLGSEEQIKKLKDMDKRKID 359
Score = 57 (25.1 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 406 VLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIY-RTTYMFSAT-MPPA 462
+L E +M +G E Q+ + D M + ++ED++ DE+R + Y F +PPA
Sbjct: 332 ILQEVIKM-PLGSEEQIKKLKD-MDKRKIDSDSEDDDDDEERKKGKKRYKFKKERLPPA 388
Score = 45 (20.9 bits), Expect = 2.7e-19, Sum P(3) = 2.7e-19
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 238 NISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQR 289
NI+ KG K P P++ K P ++ + VG + AA L L +R
Sbjct: 113 NIAKKGYKQPTPIQR----KTIPLIMEGRDVVGMARTGSGKTAAFVLPLIER 160
>UNIPROTKB|E1C4M1 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AADN02025730 IPI:IPI00593921 ProteinModelPortal:E1C4M1
Ensembl:ENSGALT00000008815 ArrayExpress:E1C4M1 Uniprot:E1C4M1
Length = 604
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 145/464 (31%), Positives = 244/464 (52%)
Query: 210 DMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNW----AEGKLTPELLRA 265
D + ++ + +KLE + FR I+ +G+ +P P+ + E K+ P+++
Sbjct: 114 DTKDNQKPTAEKLERLRREKINRFRNQHRINVQGTDLPDPIATFDQLQKEYKIHPKVIEN 173
Query: 266 VERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEA 325
++ G++ P+PIQM AIP+ L R+++ A TGSGKT AF +P+LT++ + P+++
Sbjct: 174 IQAAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFCIPLLTHLKQ--PMNK---- 227
Query: 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIV-GGQSIEEQGFRI-RQGCEVVIA 383
G A++++PTRELA Q E VK A G ++ I ++ ++ G + R+ ++++
Sbjct: 228 -GFRALIISPTRELASQTHRELVKLADGTGFRIHMIQKASEAAKKFGPKSSRKFVDILVT 286
Query: 384 TPGRLIDCLERRY-AV-LNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDE 441
TP RLI L++ A+ L ++V+DE+D++ FE G D + S L +
Sbjct: 287 TPNRLIYLLKQDPPAIDLTSVEWLVVDESDKL----FEDGKSGFRDQLASIFLACTSH-- 340
Query: 442 ELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMM-KESE 500
+ R + FSAT VE + L + V+V++G A E + Q ++ + E+
Sbjct: 341 ------VVRRAF-FSATFAHDVEEWCKLNLDSIVLVSVGARNSAAETVEQELLFVGSETG 393
Query: 501 KFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGF 560
K + ++ L+ + +VFV + + A + L G V +H K+Q+QR+ + F
Sbjct: 394 KLTAMRELVKKGFAPPVLVFVQSIERAKELFHELIYEGINVDVIHADKTQQQRDNVVHSF 453
Query: 561 RTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTF 620
R + VL+ T + RGID V VINYD+P + Y HRIGRTGRAG TG A TF T
Sbjct: 454 RAGKIWVLICTALLARGIDFKGVNMVINYDLPTSAVEYIHRIGRTGRAGHTGKAVTFFTE 513
Query: 621 HDTDVFYDLKQMLIQSNSPVP------PELAKHEASKF--KPGT 656
D + + ++ ++ PVP P+L + KF KP T
Sbjct: 514 DDKPLLRSIANVIQRAGCPVPDYIKHFPKLQSKQKKKFIKKPLT 557
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 521 (188.5 bits), Expect = 1.1e-49, P = 1.1e-49
Identities = 129/339 (38%), Positives = 189/339 (55%)
Query: 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATP 385
+GP +++APTREL+ QI E KF + VV GG S EQ + QG E+++ATP
Sbjct: 341 DGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAEIIVATP 400
Query: 386 GRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDE 445
GR+ID ++ + L + ++VLDEADRM MGFEPQV + + +++P+
Sbjct: 401 GRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICN-----HVRPD-------- 447
Query: 446 KRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHV-VMMKESEKFSR 504
R MFSAT +ERLAR L +PV + G +A + I+Q V V +K++
Sbjct: 448 ----RQCLMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNW 503
Query: 505 LQ-RLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTK 563
L L+ L + + ++FV K +A+ V+ NL Y LHG Q R + F+ K
Sbjct: 504 LLCHLVKFLSEGSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRK 563
Query: 564 RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 623
++LVATDVA RG+DIP + +V+NYD +IE +THRIGRTGRAG+ G A T +T D
Sbjct: 564 ECDILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTDKDK 623
Query: 624 DVFYDLKQMLIQSNSPVPPELAK-------HEASKFKPG 655
+ L + L ++ VP +L + +S+FK G
Sbjct: 624 EFAGHLVRNLEGADQLVPDDLMELAMKSSWFRSSRFKQG 662
Score = 397 (144.8 bits), Expect = 1.8e-34, P = 1.8e-34
Identities = 82/217 (37%), Positives = 122/217 (56%)
Query: 206 YDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRA 265
Y+ F+ + + + + R R + G P+P+ ++ +L++A
Sbjct: 226 YEPFEKNF--YTQHDDIAALDDEQVRELRRTLGVKVTGPSPPKPVTSFGHFGFDEQLIKA 283
Query: 266 VERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEA 325
V + Y P+PIQ A+P L RD+IGIA+TGSGKTAAF+ PML ++ +
Sbjct: 284 VRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVMDQKQLKP---G 340
Query: 326 EGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATP 385
+GP +++APTREL+ QI E KF + VV GG S EQ + QG E+++ATP
Sbjct: 341 DGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAEIIVATP 400
Query: 386 GRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQV 422
GR+ID ++ + L + ++VLDEADRM MGFEPQV
Sbjct: 401 GRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQV 437
>ASPGD|ASPL0000054300 [details] [associations]
symbol:AN0583 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 RefSeq:XP_658187.1 ProteinModelPortal:Q5BFU7
STRING:Q5BFU7 EnsemblFungi:CADANIAT00002094 GeneID:2876361
KEGG:ani:AN0583.2 HOGENOM:HOG000246455 OMA:HLKVEMN
OrthoDB:EOG4JWZP1 Uniprot:Q5BFU7
Length = 936
Score = 315 (115.9 bits), Expect = 1.4e-49, Sum P(3) = 1.4e-49
Identities = 78/208 (37%), Positives = 118/208 (56%)
Query: 225 MTERDWRIFREDFNISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNPSPIQMAAIPL 284
+ E+ R+ N+ KG + + A G L LL+A+ R G+ P+PIQ IP+
Sbjct: 68 IAEKQTSANRKSANL--KGRTVKKGGGFQAMG-LNANLLKAIARKGFSVPTPIQRKTIPV 124
Query: 285 GLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMAPTRELAQQIE 344
++ +DV+G+A TGSGKTAAFV+PM I +L S + A G ++++P+RELA Q
Sbjct: 125 IMEDQDVVGMARTGSGKTAAFVIPM---IEKLKSHSTKFGARG---LILSPSRELALQTL 178
Query: 345 EETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNY 404
+ + +K V +VGG S+EEQ + ++VIATPGR + L+ Y
Sbjct: 179 KVVKELGKGTDLKSVLLVGGDSLEEQFGMMAGNPDIVIATPGRFLHLKVEMNLDLSSIKY 238
Query: 405 VVLDEADRMIDMGFEPQVVGVLDAMPSS 432
VV DEADR+ +MGF Q+ +L +PS+
Sbjct: 239 VVFDEADRLFEMGFAAQLTEILHGLPST 266
Score = 238 (88.8 bits), Expect = 1.4e-49, Sum P(3) = 1.4e-49
Identities = 49/118 (41%), Positives = 72/118 (61%)
Query: 516 TAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAG 575
+ IVF TK + D + L + G+ V+ ++G Q R+I ++ FRT N+LV TDVA
Sbjct: 375 STIVFAATKHHVDYLYSLLREAGFAVSYVYGSLDQTARKIQVQNFRTGISNILVVTDVAA 434
Query: 576 RGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQML 633
RGIDIP +A+VINYD P +++ HR+GRT RAG+ G + + + D DL+ L
Sbjct: 435 RGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFL 492
Score = 87 (35.7 bits), Expect = 1.4e-49, Sum P(3) = 1.4e-49
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 450 RTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLL 509
R T +FSAT+P ++ AR L++P +V + T K + + +K +EK L +L
Sbjct: 267 RQTLLFSATLPKSLVEFARAGLQDPTLVRLDTESKISPDLQNAFFSVKSAEKEGALLYIL 326
Query: 510 DEL 512
+E+
Sbjct: 327 NEV 329
>TAIR|locus:2127043 [details] [associations]
symbol:RH8 "RNAhelicase-like 8" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016032 "viral reproduction" evidence=IMP] [GO:0019048
"virus-host interaction" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0019048 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 EMBL:AF058919 EMBL:AL161472
GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 OMA:QFMEKHL
ProtClustDB:CLSN2683443 EMBL:AJ010460 EMBL:AY080837 EMBL:AY113985
IPI:IPI00531108 PIR:T01230 PIR:T51741 RefSeq:NP_191975.2
RefSeq:NP_849535.1 UniGene:At.25593 UniGene:At.67100
UniGene:At.71300 ProteinModelPortal:Q8RXK6 SMR:Q8RXK6 STRING:Q8RXK6
PaxDb:Q8RXK6 PRIDE:Q8RXK6 EnsemblPlants:AT4G00660.1
EnsemblPlants:AT4G00660.2 GeneID:828042 KEGG:ath:AT4G00660
GeneFarm:919 TAIR:At4g00660 InParanoid:Q8RXK6 PhylomeDB:Q8RXK6
Genevestigator:Q8RXK6 GermOnline:AT4G00660 Uniprot:Q8RXK6
Length = 505
Score = 297 (109.6 bits), Expect = 1.4e-49, Sum P(2) = 1.4e-49
Identities = 62/175 (35%), Positives = 104/175 (59%)
Query: 258 LTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 317
L ELL + G++ PSPIQ +IP+ L RD++ A+ G+GKTAAF +P+L I +
Sbjct: 138 LKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQ-- 195
Query: 318 PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 377
+ N + AV++ PTRELA Q + + +L I+V+ GG S+++ R+ Q
Sbjct: 196 ---DNNVIQ---AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQP 249
Query: 378 CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 432
+++ TPGR++D ++ VL C+ +V+DEAD+++ F+P V ++ +P S
Sbjct: 250 VHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPES 304
Score = 288 (106.4 bits), Expect = 1.4e-49, Sum P(2) = 1.4e-49
Identities = 66/195 (33%), Positives = 98/195 (50%)
Query: 450 RTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLL 509
R MFSAT P V+ ++L NP V+ + + I+Q ++E +K L L
Sbjct: 305 RQILMFSATFPVTVKDFKDRFLTNPYVINLMDE-LTLKGITQFYAFVEERQKIHCLNTLF 363
Query: 510 DELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLV 569
+L +I+F N+ +++AK + +LGY +H Q+ R FR LV
Sbjct: 364 SKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLV 423
Query: 570 ATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDL 629
TD+ RGIDI V VIN+D P N E Y HR+GR+GR G G+A +T+ D Y +
Sbjct: 424 CTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRI 483
Query: 630 KQMLIQSNSPVPPEL 644
+Q L +PP +
Sbjct: 484 EQELGTEIKQIPPHI 498
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 139/426 (32%), Positives = 221/426 (51%)
Query: 253 WAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTY 312
+AE L L +A+ K+P+ +Q AIP L RD++ +++TGSGKT AF LP+L
Sbjct: 19 FAELGLNAALRKALP-TRLKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQI 77
Query: 313 ISR---LPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLG----IKVVSIVGGQ 365
+ + + ++ A P A+V+ PTRELA Q+ E A L + + + GG
Sbjct: 78 LWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGV 137
Query: 366 SIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGV 425
++E+Q + ++V+ATPGRL+D + + L+ ++VLDEADR+++MGF P + +
Sbjct: 138 ALEQQLADLSAKPQLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQKL 197
Query: 426 LDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRN-PVVVTIGTAGK 484
+ MP KR + T +FSAT+P A++ LA K L N P+ V T
Sbjct: 198 MAMMP---------------KR--KQTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNA 240
Query: 485 ATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTL 544
I + + ++ + K L LL + +VF++ + +AD +AK L K G L
Sbjct: 241 VVGEIEEQLYLVNKGSKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAAL 300
Query: 545 HGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGR 604
HG K Q R +L F+ R VLVATD+ RGI + + VIN D+P + +Y HRIGR
Sbjct: 301 HGEKDQTVRSQTLADFKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGR 360
Query: 605 TGRAGKTGVATTFLTFHDTDVFYDLKQMLIQS-------NSPVPPELAKHEASKFKPGTI 657
T RAG G+A + + + ++ + ++ + PV + ++ + I
Sbjct: 361 TARAGAKGLAISLVCHGEMPNLTAIRNLTARALPLVFLADFPVTDKPSEKIIDGAENKVI 420
Query: 658 PDRPPR 663
P RPPR
Sbjct: 421 PKRPPR 426
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 139/426 (32%), Positives = 221/426 (51%)
Query: 253 WAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTY 312
+AE L L +A+ K+P+ +Q AIP L RD++ +++TGSGKT AF LP+L
Sbjct: 19 FAELGLNAALRKALP-TRLKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQI 77
Query: 313 ISR---LPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLG----IKVVSIVGGQ 365
+ + + ++ A P A+V+ PTRELA Q+ E A L + + + GG
Sbjct: 78 LWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGV 137
Query: 366 SIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGV 425
++E+Q + ++V+ATPGRL+D + + L+ ++VLDEADR+++MGF P + +
Sbjct: 138 ALEQQLADLSAKPQLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQKL 197
Query: 426 LDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRN-PVVVTIGTAGK 484
+ MP KR + T +FSAT+P A++ LA K L N P+ V T
Sbjct: 198 MAMMP---------------KR--KQTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNA 240
Query: 485 ATELISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTL 544
I + + ++ + K L LL + +VF++ + +AD +AK L K G L
Sbjct: 241 VVGEIEEQLYLVNKGSKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAAL 300
Query: 545 HGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGR 604
HG K Q R +L F+ R VLVATD+ RGI + + VIN D+P + +Y HRIGR
Sbjct: 301 HGEKDQTVRSQTLADFKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGR 360
Query: 605 TGRAGKTGVATTFLTFHDTDVFYDLKQMLIQS-------NSPVPPELAKHEASKFKPGTI 657
T RAG G+A + + + ++ + ++ + PV + ++ + I
Sbjct: 361 TARAGAKGLAISLVCHGEMPNLTAIRNLTARALPLVFLADFPVTDKPSEKIIDGAENKVI 420
Query: 658 PDRPPR 663
P RPPR
Sbjct: 421 PKRPPR 426
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 299 (110.3 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
Identities = 72/206 (34%), Positives = 115/206 (55%)
Query: 450 RTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESE-KFSRLQRL 508
R T +FSAT P ++E++A+ RN +++ + A T I Q+ ++ S + L+ L
Sbjct: 179 RQTLLFSATYPASIEQIAQSVTRNALMIKV-EATHDTSSIRQYFYKVEGSAARDEALETL 237
Query: 509 LDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVL 568
L +++VF NTK+ VA L + G+ V LHG Q +R+ +L F K ++L
Sbjct: 238 LLHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISIL 297
Query: 569 VATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYD 628
VATDVA RG+D+ ++ V NYD+ + E++ HRIGRTGRAG G+A +F F D + Y
Sbjct: 298 VATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSF--FSDNES-YR 354
Query: 629 LKQMLIQSNSPVPPELAKHEASKFKP 654
+ Q+ + + P A+ +P
Sbjct: 355 VAQIDEYMDIAIEPSTLPQPAAGARP 380
Score = 278 (102.9 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
Identities = 65/181 (35%), Positives = 108/181 (59%)
Query: 252 NWAEGKLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLT 311
++A L PELL +E +G+ +PIQ ++P L+ +DVIG +TGSGKTAAF L +L+
Sbjct: 5 SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
Query: 312 YISRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYL-GIKVVSIVGGQSIEEQ 370
++ + + A+V+ PTRELA Q+ + + IKV+++ GG + Q
Sbjct: 65 NLN-----VKRFRVQ---ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQ 116
Query: 371 GFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMP 430
+ G +++ TPGR++D L + L++ N +VLDEADRM++MGF+ + ++ A P
Sbjct: 117 IGSLEHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAP 176
Query: 431 S 431
+
Sbjct: 177 A 177
>MGI|MGI:1915098 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915098 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:AK129402
EMBL:AK033741 EMBL:AK154422 EMBL:BC117786 EMBL:BC117787
IPI:IPI00453808 RefSeq:NP_080685.2 UniGene:Mm.281601
ProteinModelPortal:Q6ZPL9 SMR:Q6ZPL9 IntAct:Q6ZPL9 STRING:Q6ZPL9
PRIDE:Q6ZPL9 Ensembl:ENSMUST00000071057 GeneID:67848 KEGG:mmu:67848
UCSC:uc008zqc.2 InParanoid:Q6ZPL9 NextBio:325707 Bgee:Q6ZPL9
CleanEx:MM_DDX55 Genevestigator:Q6ZPL9
GermOnline:ENSMUSG00000029389 Uniprot:Q6ZPL9
Length = 600
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 138/378 (36%), Positives = 202/378 (53%)
Query: 258 LTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 317
L P +L A+ +G+ + +P+Q A IPL ++ +DV A TGSGKT AFV+P+L + R
Sbjct: 16 LHPRVLGALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRRE 75
Query: 318 PISEENEAEGPYAVVMAPTRELAQQIEEETVKFA-HYLGIKVVSIVGGQSIEEQGFRIRQ 376
++N+ G A+V+ PTRELA QI+E F H+ + +GG++ E R +Q
Sbjct: 76 EKLKKNQV-G--AIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQ 132
Query: 377 -GCEVVIATPGRLIDCLERRYAVLN--QC----NYVVLDEADRMIDMGFEPQVVGVLDAM 429
G +++ATPGRL D R+ L+ C + +VLDEADR++DMGFE + +L+ +
Sbjct: 133 HGGNIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFL 192
Query: 430 PSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTI---GTAGKAT 486
P R T +FSAT VE L R LRNPV +++ G A +T
Sbjct: 193 PKQ-----------------RRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASST 235
Query: 487 EL----ISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVT 542
+ + H ++ K EKF++L L + +VF +T + K L+ L +V
Sbjct: 236 QKTPSRLENHYMICKADEKFNQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALLKKVK 295
Query: 543 TL--HGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTH 600
L HG ++ +I +E FR + +LV TDV RGIDIP+V V+ YD P N + H
Sbjct: 296 ILCIHGKMKYKRNKIFME-FRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVH 354
Query: 601 RIGRTGRAGKTGVATTFL 618
R GRT R G G A FL
Sbjct: 355 RCGRTARIGHGGSALVFL 372
>DICTYBASE|DDB_G0291804 [details] [associations]
symbol:ddx6 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0291804 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0006397 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000185 RefSeq:XP_629938.1 HSSP:P39517
ProteinModelPortal:Q54E49 SMR:Q54E49 PRIDE:Q54E49
EnsemblProtists:DDB0234196 GeneID:8628344 KEGG:ddi:DDB_G0291804
OMA:QFMEKHL ProtClustDB:CLSZ2429504 Uniprot:Q54E49
Length = 423
Score = 289 (106.8 bits), Expect = 5.6e-49, Sum P(2) = 5.6e-49
Identities = 57/173 (32%), Positives = 104/173 (60%)
Query: 258 LTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 317
L +LLR + GY PSPIQ AIP+ L RD++ A+ G+GKTA+F++P L +
Sbjct: 56 LKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPAL---EKTD 112
Query: 318 PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 377
P + + +++ PTRELA Q + + Y+ ++V++ GG S+++ R+
Sbjct: 113 PTKDVIQV-----LILVPTRELALQTSQVCKELGKYMNVQVMASTGGTSLKDDIMRLYNP 167
Query: 378 CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMP 430
+++ATPGR++D ++ A L+ C+ +++DEAD+++ F+P V +++ +P
Sbjct: 168 VHILVATPGRVLDLAQKNVANLSNCHTMIMDEADKLLSQEFQPLVEQLINFLP 220
Score = 281 (104.0 bits), Expect = 5.6e-49, Sum P(2) = 5.6e-49
Identities = 64/197 (32%), Positives = 99/197 (50%)
Query: 450 RTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLL 509
R +FSAT P V+ YL+ + + + ++Q+ ++E +K L L
Sbjct: 223 RQILLFSATFPVTVKSFKEHYLQQAFEINL-MEELTLKGVTQYYAFVEERQKIHCLNTLF 281
Query: 510 DELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLV 569
+L +I+F N+ +++AK + +LGY +H Q R FR LV
Sbjct: 282 SKLQINQSIIFCNSVNRVELLAKKITELGYSCFFIHAKMVQAHRNRVFHDFRNGACRNLV 341
Query: 570 ATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDL 629
++D+ RGIDI DV VIN+D P + E Y HRIGR+GR G G+A +T+ D Y +
Sbjct: 342 SSDLFTRGIDIQDVNVVINFDFPKHSETYLHRIGRSGRFGHLGLAINLITYEDRFSLYKI 401
Query: 630 KQMLIQSNSPVPPELAK 646
+Q L P+PP + K
Sbjct: 402 EQELGTEIKPIPPVIDK 418
>TAIR|locus:2050715 [details] [associations]
symbol:AT2G45810 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417 GO:GO:0006397
GO:GO:0003723 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC004665 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 OMA:HIDPARF ProtClustDB:CLSN2683443 EMBL:AY039862
EMBL:BT002709 EMBL:AJ010459 IPI:IPI00528597 PIR:T02466 PIR:T51740
RefSeq:NP_182105.1 UniGene:At.46 ProteinModelPortal:Q94BV4
SMR:Q94BV4 IntAct:Q94BV4 STRING:Q94BV4 PaxDb:Q94BV4 PRIDE:Q94BV4
EnsemblPlants:AT2G45810.1 GeneID:819189 KEGG:ath:AT2G45810
GeneFarm:917 TAIR:At2g45810 InParanoid:Q94BV4 PhylomeDB:Q94BV4
Genevestigator:Q94BV4 GermOnline:AT2G45810 Uniprot:Q94BV4
Length = 528
Score = 295 (108.9 bits), Expect = 6.0e-49, Sum P(2) = 6.0e-49
Identities = 61/175 (34%), Positives = 103/175 (58%)
Query: 258 LTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 317
L +LLR + G++ PSPIQ +IP+ L D++ A+ G+GKT AF +P L ++
Sbjct: 161 LKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTL---EKID 217
Query: 318 PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 377
P E N + AV++ PTRELA Q + + + YL I+V+ GG S+ + R+ Q
Sbjct: 218 P--ENNVIQ---AVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQP 272
Query: 378 CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSS 432
+++ TPGR++D ++ VL C +V+DEAD+++ + F+P + ++ +P S
Sbjct: 273 VHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPES 327
Score = 286 (105.7 bits), Expect = 6.0e-49, Sum P(2) = 6.0e-49
Identities = 72/228 (31%), Positives = 112/228 (49%)
Query: 422 VVGVLDAMPSSNLKPENED--EELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTI 479
V+ D + S +P E+ + L E R MFSAT P V+ +YL+ P ++ +
Sbjct: 301 VMDEADKLLSVEFQPSIEELIQFLPESR---QILMFSATFPVTVKSFKDRYLKKPYIINL 357
Query: 480 GTAGKATEL-ISQHVVMMKESEKFSRLQRLLDELGDKTAIVFVNTKKNADMVAKNLDKLG 538
+ T + ++Q+ ++E +K L L +L +I+F N+ +++AK + +LG
Sbjct: 358 --MDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELG 415
Query: 539 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMY 598
Y +H Q+ R FR LV TD+ RGIDI V VIN+D P E Y
Sbjct: 416 YSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESY 475
Query: 599 THRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAK 646
HR+GR+GR G G+A +T+ D Y +Q L P+P + K
Sbjct: 476 LHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEIKPIPSLIDK 523
>MGI|MGI:2182303 [details] [associations]
symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 MGI:MGI:2182303 GO:GO:0005886 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:AF334104 IPI:IPI00117771 RefSeq:NP_444413.1
UniGene:Mm.114116 ProteinModelPortal:Q99MJ9 SMR:Q99MJ9
PhosphoSite:Q99MJ9 PaxDb:Q99MJ9 PRIDE:Q99MJ9
Ensembl:ENSMUST00000020270 GeneID:94213 KEGG:mmu:94213
UCSC:uc007fhp.1 InParanoid:Q99MJ9 NextBio:352175 Bgee:Q99MJ9
CleanEx:MM_DDX50 Genevestigator:Q99MJ9
GermOnline:ENSMUSG00000020076 Uniprot:Q99MJ9
Length = 734
Score = 491 (177.9 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 134/409 (32%), Positives = 217/409 (53%)
Query: 222 LEEMTERDWRIFREDFNISYKGS-KIPRPM-RNWAEG-----KLTPELLRAVERVGYKNP 274
++E +R R+ + N S+K S K + R EG ++ E ++ ++ G
Sbjct: 100 VDEYEKRSKRVSSSE-N-SHKSSDKAEETLTREQKEGAFSNFSISEETIKLLKGRGVTYL 157
Query: 275 SPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPYAVVMA 334
PIQ+ + +D+I A TG+GKT +F +P++ + R +++ + P +V+A
Sbjct: 158 FPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRS--PKVLVLA 215
Query: 335 PTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLER 394
PTRELA Q+ ++ L V GG S + Q +IR G ++++ TPGR+ D L+
Sbjct: 216 PTRELANQVAKDFKDITRKLS--VACFYGGTSYQSQINQIRNGIDILVGTPGRIKDHLQS 273
Query: 395 RYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYM 454
L++ +VVLDE D+M+D+GF QV ++ + K ++ED T +
Sbjct: 274 GRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIH----ESYKTDSEDNP--------QTLL 321
Query: 455 FSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDEL-- 512
FSAT P V ++A+KY+++ + GK T+ + V + +S+ ++ ++
Sbjct: 322 FSATCPQWVYKVAKKYMKSRYE-QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQ 380
Query: 513 ----GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVL 568
+ AI+F TKKN +A N + LHG +Q QREI+L+GFR + VL
Sbjct: 381 VYSGSEGRAIIFCETKKNVTEMAMN-PHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 439
Query: 569 VATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 617
VAT+VA RG+DIP+V VI P ++E Y HR GRTGRAG+TG+ F
Sbjct: 440 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCF 488
Score = 39 (18.8 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 6/10 (60%), Positives = 10/10 (100%)
Query: 603 GRTGRAGKTG 612
GR+GR+G++G
Sbjct: 682 GRSGRSGRSG 691
>UNIPROTKB|P54475 [details] [associations]
symbol:cshB "DEAD-box ATP-dependent RNA helicase CshB"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0009409 "response to cold" evidence=IGI]
[GO:0043590 "bacterial nucleoid" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0009409 GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
EMBL:D84432 PIR:D69954 RefSeq:NP_390393.1 ProteinModelPortal:P54475
SMR:P54475 IntAct:P54475 EnsemblBacteria:EBBACT00000001897
GeneID:937908 KEGG:bsu:BSU25140 PATRIC:18976864 GenoList:BSU25140
HOGENOM:HOG000268806 OMA:YAHVEPK ProtClustDB:CLSK2301471
BioCyc:BSUB:BSU25140-MONOMER Uniprot:P54475
Length = 438
Score = 311 (114.5 bits), Expect = 1.9e-48, Sum P(2) = 1.9e-48
Identities = 70/214 (32%), Positives = 110/214 (51%)
Query: 454 MFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMKESEKFSRLQRLLDELG 513
+FSAT+P ++ +KY+ NP + I ++ K +K L ++ L
Sbjct: 185 VFSATIPEKLKPFLKKYMENPKYAHVEPKQVTAAKIEHILIPSKHRDKDKLLFDIMSHLN 244
Query: 514 DKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV 573
IVF NTK AD +A+ L G ++ LHGG + +R+ ++ + ++ATD+
Sbjct: 245 PYLGIVFANTKNTADHIAQYLTGKGMKIGLLHGGLTPRERKKVMKQINDLEFTYIIATDL 304
Query: 574 AGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQML 633
A RGIDI V+HVINY++P +++ Y HR+GRT RAG +G A T D D L++M
Sbjct: 305 AARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMTIYELTDEDALVRLEKMG 364
Query: 634 IQSNSPVPPELAKHEASKFKPGTIPDRPPRRNDT 667
I+ E + E ++K G R +R T
Sbjct: 365 IEF------EYLELEKGEWKKGDDRQRRKKRKKT 392
Score = 247 (92.0 bits), Expect = 1.9e-48, Sum P(2) = 1.9e-48
Identities = 60/177 (33%), Positives = 103/177 (58%)
Query: 257 KLTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRL 316
+L P ++ AV R+G+ P+ IQ IP L++ VIG ++TG+GKT A++LP+L +++
Sbjct: 10 ELKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLL---NKI 66
Query: 317 PPISEENEAEGPYAVVMAPTRELAQQIEEETVKFAH-YLGIKVVS--IVGGQSIEEQGFR 373
P + + V+ APTRELA QI +E +K G ++ S +GG ++ +
Sbjct: 67 DPAKDVVQV-----VITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDK 121
Query: 374 IRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMP 430
++ +V+ TPGR+ D ++ + +++ +V+DEAD M+DMGF V + MP
Sbjct: 122 LKIQPHLVVGTPGRIADLIKEQALSVHKAESLVIDEADLMLDMGFLADVDYIGSRMP 178
Score = 41 (19.5 bits), Expect = 8.0e-27, Sum P(2) = 8.0e-27
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 238 NISYKGSKIPRPMRNWAEGKLTPELLRAVERVGYKNP 274
++ Y GS++P ++ PE L+ + +NP
Sbjct: 169 DVDYIGSRMPEDLQMLVFSATIPEKLKPFLKKYMENP 205
>RGD|621743 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=NAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:621743
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
CTD:11056 GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AB055628 IPI:IPI00201365 RefSeq:NP_445977.1 UniGene:Rn.18605
ProteinModelPortal:Q99PT0 SMR:Q99PT0 PRIDE:Q99PT0
Ensembl:ENSRNOT00000003600 GeneID:85432 KEGG:rno:85432
InParanoid:Q99PT0 NextBio:617542 Genevestigator:Q99PT0
GermOnline:ENSRNOG00000002612 Uniprot:Q99PT0
Length = 598
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 138/436 (31%), Positives = 226/436 (51%)
Query: 214 DRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRNWA----EGKLTPELLRAVERV 269
++ + +KLE + + FR I +G+ +P P+ + E K++P LL+ +
Sbjct: 125 EKKLTSEKLEHLRKEKINFFRNKHKIHVQGTDLPDPIATFQQLDQEYKISPRLLQNILDA 184
Query: 270 GYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPISEENEAEGPY 329
G++ P+PIQM AIP+ L R+++ A TGSGKT AF +P+L + + P ++ G
Sbjct: 185 GFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ--PTNK-----GFR 237
Query: 330 AVVMAPTRELAQQIEEETVKFAHYLGIKVVSI-VGGQSIEEQGFRIRQGCEVVIATPGRL 388
A+V++PTRELA QI E +K + G ++ I + ++ G + + ++++ TP RL
Sbjct: 238 ALVISPTRELASQIHRELIKISEGTGFRIHMIHKAAIAAKKFGPKSSKKFDILVTTPNRL 297
Query: 389 IDCLERRYAV--LNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEK 446
I L++ L ++V+DE+D++ FE G D + S L
Sbjct: 298 IYLLKQEPPGIDLTSVEWLVVDESDKL----FEDGKTGFRDQLASIFLA-------CTSP 346
Query: 447 RIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMM-KESEKFSRL 505
++ R MFSAT VE+ + L N V V+IG A E + Q ++ + E+ K +
Sbjct: 347 KVRRA--MFSATFAYDVEQWCKLNLDNIVSVSIGARNSAVETVEQELLFVGSETGKLLAM 404
Query: 506 QRLLDELGDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQEQREISLEGFRTKRY 565
+ L+ + + +VFV + + A + L G V +H ++Q+QR+ ++ FR +
Sbjct: 405 RELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKI 464
Query: 566 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDV 625
VL+ T + RGID V VINYD P + Y HRIGRTGRAG G A TF T D +
Sbjct: 465 WVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPL 524
Query: 626 FYDLKQMLIQSNSPVP 641
+ ++ Q+ PVP
Sbjct: 525 LRSVANVIQQAGCPVP 540
>UNIPROTKB|E2QTT0 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 OMA:GDTEEGC EMBL:AAEX03002786
Ensembl:ENSCAFT00000021867 NextBio:20898308 Uniprot:E2QTT0
Length = 738
Score = 489 (177.2 bits), Expect = 3.4e-48, Sum P(2) = 3.4e-48
Identities = 123/366 (33%), Positives = 198/366 (54%)
Query: 258 LTPELLRAVERVGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 317
++ E ++ ++ G PIQ+ + +D+I A TG+GKT +F +P++ + R
Sbjct: 145 ISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQ 204
Query: 318 PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 377
+++ + P +V+APTRELA Q+ ++ L V GG S + Q IR G
Sbjct: 205 ETIKKSRS--PKVLVLAPTRELANQVAKDFKDITRKLS--VACFYGGTSYQSQINHIRNG 260
Query: 378 CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPE 437
++++ TPGR+ D L+ L++ +VVLDE D+M+D+GF QV ++ + K +
Sbjct: 261 IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIH----ESYKTD 316
Query: 438 NEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQHVVMMK 497
+ED T +FSAT P V ++A+KY+++ + GK T+ + V +
Sbjct: 317 SEDNP--------QTLLFSATCPQWVYKVAKKYMKSRYE-QVDLVGKMTQKAATTVEHLA 367
Query: 498 ESEKFSRLQRLLDEL------GDKTAIVFVNTKKNADMVAKNLDKLGYRVTTLHGGKSQE 551
+S+ ++ ++ + AI+F TKKN +A N + LHG +Q
Sbjct: 368 IQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMN-PHIKQNAQCLHGDIAQS 426
Query: 552 QREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKT 611
QREI+L+GFR + VLVAT+VA RG+DIP+V VI P ++E Y HR GRTGRAG+T
Sbjct: 427 QREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRT 486
Query: 612 GVATTF 617
G+ F
Sbjct: 487 GICICF 492
Score = 38 (18.4 bits), Expect = 3.4e-48, Sum P(2) = 3.4e-48
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 603 GRTGRAGKTG 612
GR GR+G++G
Sbjct: 686 GRAGRSGRSG 695
WARNING: HSPs involving 741 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 671 577 0.00081 120 3 11 22 0.41 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 991
No. of states in DFA: 611 (65 KB)
Total size of DFA: 300 KB (2155 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 48.96u 0.12s 49.08t Elapsed: 00:00:02
Total cpu time: 49.02u 0.12s 49.14t Elapsed: 00:00:02
Start: Fri May 10 16:31:38 2013 End: Fri May 10 16:31:40 2013
WARNINGS ISSUED: 2